AMD08_RS00030 PF00204 DNA gyrase B AMD08_RS00095 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD08_RS00200 PF01694 Rhomboid family AMD08_RS00220 PF04389 Peptidase family M28 AMD08_RS00320 PF07690 Major Facilitator Superfamily AMD08_RS00400 PF00308 Bacterial dnaA protein AMD08_RS00400 PF08299 Bacterial dnaA protein helix-turn-helix AMD08_RS00400 PF11638 DnaA N-terminal domain AMD08_RS00405 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD08_RS00405 PF02767 DNA polymerase III beta subunit, central domain AMD08_RS00405 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD08_RS00410 PF02463 RecF/RecN/SMC N terminal domain AMD08_RS00415 PF00204 DNA gyrase B AMD08_RS00415 PF00986 DNA gyrase B subunit, carboxyl terminus AMD08_RS00415 PF01751 Toprim domain AMD08_RS00415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS00420 PF02517 CAAX protease self-immunity AMD08_RS00425 PF01435 Peptidase family M48 AMD08_RS00430 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) AMD08_RS00435 PF03544 Gram-negative bacterial TonB protein C-terminal AMD08_RS00440 PF01618 AMD08_RS00440 AMD08_RS00445 PF02472 Biopolymer transport protein ExbD/TolR AMD08_RS00450 PF02472 Biopolymer transport protein ExbD/TolR AMD08_RS00455 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD08_RS00465 PF13091 PLD-like domain AMD08_RS00480 PF04055 Radical SAM superfamily AMD08_RS00485 PF13640 2OG-Fe(II) oxygenase superfamily AMD08_RS00490 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD08_RS00495 PF01694 Rhomboid family AMD08_RS00500 PF08850 AMD08_RS00500 AMD08_RS00505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD08_RS00505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD08_RS00510 PF03572 Peptidase family S41 AMD08_RS00510 PF13180 PDZ domain AMD08_RS00515 PF01551 Peptidase family M23 AMD08_RS00525 PF04389 Peptidase family M28 AMD08_RS00530 PF13670 AMD08_RS00530 AMD08_RS00535 PF00150 Cellulase (glycosyl hydrolase family 5) AMD08_RS00540 PF00150 Cellulase (glycosyl hydrolase family 5) AMD08_RS00560 PF06877 Regulator of ribonuclease activity B AMD08_RS00565 PF08212 Lipocalin-like domain AMD08_RS00570 PF04616 Glycosyl hydrolases family 43 AMD08_RS00575 PF13347 MFS/sugar transport protein AMD08_RS00580 PF00593 TonB dependent receptor AMD08_RS00580 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS00585 PF07690 Major Facilitator Superfamily AMD08_RS00590 PF00331 Glycosyl hydrolase family 10 AMD08_RS00605 PF00331 Glycosyl hydrolase family 10 AMD08_RS00610 PF02614 Glucuronate isomerase AMD08_RS00615 PF00703 Glycosyl hydrolases family 2 AMD08_RS00615 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD08_RS00615 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD08_RS00615 PF16355 AMD08_RS00615 AMD08_RS00620 PF00331 Glycosyl hydrolase family 10 AMD08_RS00625 PF08450 SMP-30/Gluconolaconase/LRE-like region AMD08_RS00630 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AMD08_RS00635 PF09694 AMD08_RS00635 AMD08_RS00640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD08_RS00640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD08_RS00645 PF00596 Class II Aldolase and Adducin N-terminal domain AMD08_RS00650 PF00202 Aminotransferase class-III AMD08_RS00665 PF00171 Aldehyde dehydrogenase family AMD08_RS00670 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS00675 PF01344 Kelch motif AMD08_RS00675 PF13964 Kelch motif AMD08_RS00690 PF01232 Mannitol dehydrogenase Rossmann domain AMD08_RS00690 PF08125 Mannitol dehydrogenase C-terminal domain AMD08_RS00695 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD08_RS00695 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD08_RS00695 PF07691 PA14 domain AMD08_RS00695 PF14310 Fibronectin type III-like domain AMD08_RS00700 PF04616 Glycosyl hydrolases family 43 AMD08_RS00705 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD08_RS00705 PF13378 Enolase C-terminal domain-like AMD08_RS00710 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD08_RS00710 PF03629 Domain of unknown function (DUF303) AMD08_RS00715 PF03648 Glycosyl hydrolase family 67 N-terminus AMD08_RS00715 PF07477 Glycosyl hydrolase family 67 C-terminus AMD08_RS00715 PF07488 Glycosyl hydrolase family 67 middle domain AMD08_RS00720 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS00720 PF13377 Periplasmic binding protein-like domain AMD08_RS00735 PF04381 Putative exonuclease, RdgC AMD08_RS00740 PF01863 Protein of unknown function DUF45 AMD08_RS00750 PF00561 alpha/beta hydrolase fold AMD08_RS00755 PF00762 Ferrochelatase AMD08_RS00760 PF04366 AMD08_RS00760 AMD08_RS00765 PF02416 mttA/Hcf106 family AMD08_RS00770 PF02416 mttA/Hcf106 family AMD08_RS00775 PF00902 Sec-independent protein translocase protein (TatC) AMD08_RS00785 PF00117 Glutamine amidotransferase class-I AMD08_RS00795 PF00437 Type II/IV secretion system protein AMD08_RS00795 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD08_RS00800 PF02091 Glycyl-tRNA synthetase alpha subunit AMD08_RS00805 PF02092 AMD08_RS00805 AMD08_RS00805 PF05746 DALR anticodon binding domain AMD08_RS00815 PF00593 TonB dependent receptor AMD08_RS00820 PF01609 Transposase DDE domain AMD08_RS00830 PF01103 Surface antigen AMD08_RS00830 PF07244 Surface antigen variable number repeat AMD08_RS00835 PF04357 AMD08_RS00835 AMD08_RS00855 PF13360 PQQ-like domain AMD08_RS00860 PF01202 Shikimate kinase AMD08_RS00865 PF13347 MFS/sugar transport protein AMD08_RS00870 PF06165 Glycosyltransferase family 36 AMD08_RS00870 PF17167 AMD08_RS00870 AMD08_RS00875 PF15979 AMD08_RS00875 AMD08_RS00885 PF00072 Response regulator receiver domain AMD08_RS00885 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS00885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS00885 PF12860 AMD08_RS00885 AMD08_RS00890 PF02659 AMD08_RS00890 AMD08_RS00895 PF01614 Bacterial transcriptional regulator AMD08_RS00895 PF09339 IclR helix-turn-helix domain AMD08_RS00900 PF07690 Major Facilitator Superfamily AMD08_RS00905 PF05336 Domain of unknown function (DUF718) AMD08_RS00915 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD08_RS00915 PF13378 Enolase C-terminal domain-like AMD08_RS00920 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD08_RS00925 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS00930 PF04909 Amidohydrolase AMD08_RS00935 PF00248 Aldo/keto reductase family AMD08_RS00945 PF04616 Glycosyl hydrolases family 43 AMD08_RS00955 PF00578 AhpC/TSA family AMD08_RS00965 PF14415 Domain of unknown function (DUF4424) AMD08_RS00970 PF00072 Response regulator receiver domain AMD08_RS00970 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS00975 PF00501 AMP-binding enzyme AMD08_RS00975 PF13193 AMP-binding enzyme C-terminal domain AMD08_RS00975 PF16177 AMD08_RS00975 AMD08_RS00985 PF04341 AMD08_RS00985 AMD08_RS00990 PF00474 Sodium:solute symporter family AMD08_RS00995 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD08_RS01000 PF13616 PPIC-type PPIASE domain AMD08_RS01010 PF00480 ROK family AMD08_RS01015 PF03372 Endonuclease/Exonuclease/phosphatase family AMD08_RS01020 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD08_RS01025 PF04226 AMD08_RS01025 AMD08_RS01035 PF01648 4'-phosphopantetheinyl transferase superfamily AMD08_RS01040 PF09423 PhoD-like phosphatase AMD08_RS01040 PF16655 AMD08_RS01040 AMD08_RS01045 PF09423 PhoD-like phosphatase AMD08_RS01045 PF16655 AMD08_RS01045 AMD08_RS01050 PF02527 rRNA small subunit methyltransferase G AMD08_RS01055 PF05960 Bacterial protein of unknown function (DUF885) AMD08_RS01065 PF02321 Outer membrane efflux protein AMD08_RS01070 PF16576 AMD08_RS01070 AMD08_RS01075 PF00873 AcrB/AcrD/AcrF family AMD08_RS01080 PF00830 Ribosomal L28 family AMD08_RS01085 PF00471 Ribosomal protein L33 AMD08_RS01090 PF04909 Amidohydrolase AMD08_RS01095 PF04303 PrpF protein AMD08_RS01100 PF03737 Demethylmenaquinone methyltransferase AMD08_RS01105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS01105 PF03466 LysR substrate binding domain AMD08_RS01110 PF13091 PLD-like domain AMD08_RS01110 PF13396 AMD08_RS01110 AMD08_RS01120 PF13454 FAD-NAD(P)-binding AMD08_RS01125 PF00580 UvrD/REP helicase N-terminal domain AMD08_RS01125 PF13361 UvrD-like helicase C-terminal domain AMD08_RS01130 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS01130 PF12464 Maltose acetyltransferase AMD08_RS01135 PF00582 Universal stress protein family AMD08_RS01140 PF12833 Helix-turn-helix domain AMD08_RS01145 PF05591 AMD08_RS01145 AMD08_RS01150 PF05943 AMD08_RS01150 AMD08_RS01155 PF05638 Protein of unknown function (DUF796) AMD08_RS01160 PF07024 ImpE protein AMD08_RS01165 PF04965 Gene 25-like lysozyme AMD08_RS01170 PF05947 AMD08_RS01170 AMD08_RS01175 PF06996 AMD08_RS01175 AMD08_RS01180 PF00004 ATPase family associated with various cellular activities (AAA) AMD08_RS01180 PF07724 AAA domain (Cdc48 subfamily) AMD08_RS01180 PF10431 C-terminal, D2-small domain, of ClpB protein AMD08_RS01205 PF01419 Jacalin-like lectin domain AMD08_RS01210 PF00328 Histidine phosphatase superfamily (branch 2) AMD08_RS01215 PF00593 TonB dependent receptor AMD08_RS01215 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS01220 PF04773 FecR protein AMD08_RS01220 PF16220 AMD08_RS01220 AMD08_RS01220 PF16344 AMD08_RS01220 AMD08_RS01225 PF04542 Sigma-70 region 2 AMD08_RS01225 PF08281 Sigma-70, region 4 AMD08_RS01230 PF07638 ECF sigma factor AMD08_RS01235 PF00069 Protein kinase domain AMD08_RS01235 PF13374 Tetratricopeptide repeat AMD08_RS01235 PF13424 Tetratricopeptide repeat AMD08_RS01240 PF05488 PAAR motif AMD08_RS01245 PF00515 Tetratricopeptide repeat AMD08_RS01245 PF13489 Methyltransferase domain AMD08_RS01250 PF05954 Phage late control gene D protein (GPD) AMD08_RS01260 PF00498 FHA domain AMD08_RS01265 PF05936 AMD08_RS01265 AMD08_RS01270 PF00691 OmpA family AMD08_RS01270 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AMD08_RS01275 PF06744 AMD08_RS01275 AMD08_RS01275 PF06761 AMD08_RS01275 AMD08_RS01275 PF14331 AMD08_RS01275 AMD08_RS01280 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) AMD08_RS01285 PF13672 Protein phosphatase 2C AMD08_RS01290 PF00069 Protein kinase domain AMD08_RS01290 PF03781 Sulfatase-modifying factor enzyme 1 AMD08_RS01300 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD08_RS01300 PF08479 POTRA domain, ShlB-type AMD08_RS01305 PF05860 haemagglutination activity domain AMD08_RS01310 PF06812 AMD08_RS01310 AMD08_RS01315 PF11191 Protein of unknown function (DUF2782) AMD08_RS01320 PF00476 DNA polymerase family A AMD08_RS01320 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD08_RS01320 PF01612 3'-5' exonuclease AMD08_RS01320 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD08_RS01325 PF01218 Coproporphyrinogen III oxidase AMD08_RS01340 PF00326 Prolyl oligopeptidase family AMD08_RS01340 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD08_RS01345 PF00501 AMP-binding enzyme AMD08_RS01360 PF04820 Tryptophan halogenase AMD08_RS01365 PF00550 Phosphopantetheine attachment site AMD08_RS01375 PF01553 Acyltransferase AMD08_RS01380 PF07977 FabA-like domain AMD08_RS01385 PF03279 AMD08_RS01385 AMD08_RS01400 PF03176 MMPL family AMD08_RS01415 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS01425 PF04820 Tryptophan halogenase AMD08_RS01425 PF13450 NAD(P)-binding Rossmann-like domain AMD08_RS01430 PF00535 Glycosyl transferase family 2 AMD08_RS01435 PF13723 AMD08_RS01435 AMD08_RS01440 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD08_RS01440 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD08_RS01445 PF05166 YcgL domain AMD08_RS01450 PF00023 Ankyrin repeat AMD08_RS01450 PF12796 Ankyrin repeats (3 copies) AMD08_RS01460 PF00723 Glycosyl hydrolases family 15 AMD08_RS01465 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD08_RS01465 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD08_RS01470 PF00999 Sodium/hydrogen exchanger family AMD08_RS01470 PF02254 TrkA-N domain AMD08_RS01475 PF00194 Eukaryotic-type carbonic anhydrase AMD08_RS01480 PF00571 CBS domain AMD08_RS01480 PF01769 Divalent cation transporter AMD08_RS01480 PF03448 MgtE intracellular N domain AMD08_RS01485 PF13302 Acetyltransferase (GNAT) domain AMD08_RS01485 PF13380 CoA binding domain AMD08_RS01485 PF13549 ATP-grasp domain AMD08_RS01485 PF13607 Succinyl-CoA ligase like flavodoxin domain AMD08_RS01490 PF04332 AMD08_RS01490 AMD08_RS01495 PF00317 Ribonucleotide reductase, all-alpha domain AMD08_RS01495 PF02867 Ribonucleotide reductase, barrel domain AMD08_RS01500 PF00268 Ribonucleotide reductase, small chain AMD08_RS01505 PF00258 Flavodoxin AMD08_RS01510 PF00085 Thioredoxin AMD08_RS01520 PF03061 Thioesterase superfamily AMD08_RS01530 PF02558 Ketopantoate reductase PanE/ApbA AMD08_RS01530 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMD08_RS01535 PF12686 AMD08_RS01535 AMD08_RS01540 PF01061 AMD08_RS01540 AMD08_RS01545 PF00005 ABC transporter AMD08_RS01550 PF00175 Oxidoreductase NAD-binding domain AMD08_RS01550 PF00970 Oxidoreductase FAD-binding domain AMD08_RS01555 PF01965 DJ-1/PfpI family AMD08_RS01555 PF12833 Helix-turn-helix domain AMD08_RS01560 PF11287 AMD08_RS01560 AMD08_RS01565 PF00593 TonB dependent receptor AMD08_RS01565 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS01575 PF01545 Cation efflux family AMD08_RS01580 PF02583 Metal-sensitive transcriptional repressor AMD08_RS01585 PF01229 Glycosyl hydrolases family 39 AMD08_RS01595 PF01381 Helix-turn-helix AMD08_RS01600 PF00561 alpha/beta hydrolase fold AMD08_RS01600 PF08386 TAP-like protein AMD08_RS01605 PF00005 ABC transporter AMD08_RS01610 PF12679 AMD08_RS01610 AMD08_RS01615 PF03544 Gram-negative bacterial TonB protein C-terminal AMD08_RS01620 PF04820 Tryptophan halogenase AMD08_RS01625 PF13621 Cupin-like domain AMD08_RS01630 PF07277 AMD08_RS01630 AMD08_RS01635 PF00593 TonB dependent receptor AMD08_RS01635 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS01645 PF00043 Glutathione S-transferase, C-terminal domain AMD08_RS01645 PF02798 Glutathione S-transferase, N-terminal domain AMD08_RS01650 PF00326 Prolyl oligopeptidase family AMD08_RS01650 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD08_RS01655 PF05960 Bacterial protein of unknown function (DUF885) AMD08_RS01675 PF00490 Delta-aminolevulinic acid dehydratase AMD08_RS01680 PF01370 NAD dependent epimerase/dehydratase family AMD08_RS01685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS01685 PF03466 LysR substrate binding domain AMD08_RS01690 PF01223 DNA/RNA non-specific endonuclease AMD08_RS01695 PF00175 Oxidoreductase NAD-binding domain AMD08_RS01695 PF00258 Flavodoxin AMD08_RS01695 PF03929 AMD08_RS01695 AMD08_RS01700 PF07676 WD40-like Beta Propeller Repeat AMD08_RS01705 PF01488 Shikimate / quinate 5-dehydrogenase AMD08_RS01705 PF08501 Shikimate dehydrogenase substrate binding domain AMD08_RS01720 PF13307 Helicase C-terminal domain AMD08_RS01725 PF00199 Catalase AMD08_RS01725 PF06628 Catalase-related immune-responsive AMD08_RS01730 PF12796 Ankyrin repeats (3 copies) AMD08_RS01740 PF01207 Dihydrouridine synthase (Dus) AMD08_RS01750 PF00072 Response regulator receiver domain AMD08_RS01750 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS01755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS01760 PF08811 AMD08_RS01760 AMD08_RS01765 PF07394 AMD08_RS01765 AMD08_RS01770 PF06167 Glucose-regulated metallo-peptidase M90 AMD08_RS01780 PF02237 Biotin protein ligase C terminal domain AMD08_RS01780 PF03099 Biotin/lipoate A/B protein ligase family AMD08_RS01780 PF08279 HTH domain AMD08_RS01785 PF03309 Type III pantothenate kinase AMD08_RS01790 PF05036 Sporulation related domain AMD08_RS01800 PF02223 Thymidylate kinase AMD08_RS01820 PF03259 Roadblock/LC7 domain AMD08_RS01825 PF00491 Arginase family AMD08_RS01830 PF08085 AMD08_RS01830 AMD08_RS01835 PF08085 AMD08_RS01835 AMD08_RS01840 PF05532 CsbD-like AMD08_RS01845 PF00579 tRNA synthetases class I (W and Y) AMD08_RS01845 PF07411 Domain of unknown function (DUF1508) AMD08_RS01850 PF00753 Metallo-beta-lactamase superfamily AMD08_RS01855 PF02225 PA domain AMD08_RS01855 PF04389 Peptidase family M28 AMD08_RS01865 PF00892 EamA-like transporter family AMD08_RS01870 PF00892 EamA-like transporter family AMD08_RS01875 PF12697 Alpha/beta hydrolase family AMD08_RS01880 PF02687 AMD08_RS01880 AMD08_RS01880 PF12704 MacB-like periplasmic core domain AMD08_RS01885 PF02687 AMD08_RS01885 AMD08_RS01885 PF12704 MacB-like periplasmic core domain AMD08_RS01890 PF00005 ABC transporter AMD08_RS01895 PF16576 AMD08_RS01895 AMD08_RS01900 PF07730 Histidine kinase AMD08_RS01905 PF00072 Response regulator receiver domain AMD08_RS01905 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS01910 PF06283 Trehalose utilisation AMD08_RS01915 PF01292 Prokaryotic cytochrome b561 AMD08_RS01920 PF00199 Catalase AMD08_RS01925 PF04542 Sigma-70 region 2 AMD08_RS01925 PF08281 Sigma-70, region 4 AMD08_RS01935 PF00883 Cytosol aminopeptidase family, catalytic domain AMD08_RS01940 PF13419 Haloacid dehalogenase-like hydrolase AMD08_RS01945 PF01594 AMD08_RS01945 AMD08_RS01965 PF13180 PDZ domain AMD08_RS01965 PF13365 Trypsin-like peptidase domain AMD08_RS01975 PF11769 AMD08_RS01975 AMD08_RS01985 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS01985 PF00672 HAMP domain AMD08_RS01985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS01990 PF00072 Response regulator receiver domain AMD08_RS01990 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS01995 PF01370 NAD dependent epimerase/dehydratase family AMD08_RS01995 PF08338 Domain of unknown function (DUF1731) AMD08_RS02000 PF13628 AMD08_RS02000 AMD08_RS02020 PF11379 AMD08_RS02020 AMD08_RS02025 PF00326 Prolyl oligopeptidase family AMD08_RS02035 PF01139 tRNA-splicing ligase RtcB AMD08_RS02040 PF01145 SPFH domain / Band 7 family AMD08_RS02055 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS02060 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD08_RS02060 PF00175 Oxidoreductase NAD-binding domain AMD08_RS02060 PF00970 Oxidoreductase FAD-binding domain AMD08_RS02065 PF00487 AMD08_RS02065 AMD08_RS02070 PF00563 EAL domain AMD08_RS02070 PF12792 AMD08_RS02070 AMD08_RS02080 PF08212 Lipocalin-like domain AMD08_RS02085 PF01078 Magnesium chelatase, subunit ChlI AMD08_RS02085 PF13335 AMD08_RS02085 AMD08_RS02085 PF13541 Subunit ChlI of Mg-chelatase AMD08_RS02090 PF04380 AMD08_RS02090 AMD08_RS02095 PF00543 Nitrogen regulatory protein P-II AMD08_RS02100 PF02838 Glycosyl hydrolase family 20, domain 2 AMD08_RS02100 PF07555 beta-N-acetylglucosaminidase AMD08_RS02110 PF13505 Outer membrane protein beta-barrel domain AMD08_RS02120 PF09851 AMD08_RS02120 AMD08_RS02120 PF14470 Bacterial PH domain AMD08_RS02125 PF01564 Spermine/spermidine synthase AMD08_RS02130 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD08_RS02130 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD08_RS02140 PF00501 AMP-binding enzyme AMD08_RS02140 PF00550 Phosphopantetheine attachment site AMD08_RS02140 PF00668 Condensation domain AMD08_RS02140 PF00975 Thioesterase domain AMD08_RS02140 PF13193 AMP-binding enzyme C-terminal domain AMD08_RS02145 PF03033 Glycosyltransferase family 28 N-terminal domain AMD08_RS02150 PF01757 AMD08_RS02150 AMD08_RS02155 PF00106 short chain dehydrogenase AMD08_RS02165 PF05036 Sporulation related domain AMD08_RS02170 PF00750 tRNA synthetases class I (R) AMD08_RS02170 PF03485 Arginyl tRNA synthetase N terminal domain AMD08_RS02170 PF05746 DALR anticodon binding domain AMD08_RS02175 PF04002 RadC-like JAB domain AMD08_RS02180 PF02441 Flavoprotein AMD08_RS02180 PF04127 DNA / pantothenate metabolism flavoprotein AMD08_RS02185 PF00692 dUTPase AMD08_RS02190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD08_RS02190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD08_RS02190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD08_RS02190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD08_RS02200 PF07578 Lipid A Biosynthesis N-terminal domain AMD08_RS02205 PF00535 Glycosyl transferase family 2 AMD08_RS02210 PF01370 NAD dependent epimerase/dehydratase family AMD08_RS02215 PF11731 AMD08_RS02215 AMD08_RS02220 PF02195 ParB-like nuclease domain AMD08_RS02225 PF13614 AAA domain AMD08_RS02235 PF00156 Phosphoribosyl transferase domain AMD08_RS02240 PF03372 Endonuclease/Exonuclease/phosphatase family AMD08_RS02245 PF07690 Major Facilitator Superfamily AMD08_RS02255 PF03702 Uncharacterised protein family (UPF0075) AMD08_RS02260 PF01551 Peptidase family M23 AMD08_RS02260 PF04225 Opacity-associated protein A LysM-like domain AMD08_RS02265 PF00579 tRNA synthetases class I (W and Y) AMD08_RS02295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD08_RS02295 PF06827 Zinc finger found in FPG and IleRS AMD08_RS02295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD08_RS02300 PF14315 AMD08_RS02300 AMD08_RS02305 PF04349 Periplasmic glucan biosynthesis protein, MdoG AMD08_RS02310 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS02310 PF01590 GAF domain AMD08_RS02310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS02315 PF00265 Thymidine kinase AMD08_RS02320 PF00580 UvrD/REP helicase N-terminal domain AMD08_RS02320 PF13361 UvrD-like helicase C-terminal domain AMD08_RS02325 PF13302 Acetyltransferase (GNAT) domain AMD08_RS02330 PF14094 AMD08_RS02330 AMD08_RS02340 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMD08_RS02345 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD08_RS02350 PF04820 Tryptophan halogenase AMD08_RS02365 PF13620 Carboxypeptidase regulatory-like domain AMD08_RS02370 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS02370 PF13377 Periplasmic binding protein-like domain AMD08_RS02380 PF01553 Acyltransferase AMD08_RS02385 PF00107 Zinc-binding dehydrogenase AMD08_RS02385 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS02390 PF04325 Protein of unknown function (DUF465) AMD08_RS02400 PF00665 Integrase core domain AMD08_RS02400 PF13936 Helix-turn-helix domain AMD08_RS02405 PF01695 IstB-like ATP binding protein AMD08_RS02410 PF00150 Cellulase (glycosyl hydrolase family 5) AMD08_RS02415 PF00107 Zinc-binding dehydrogenase AMD08_RS02415 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS02420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS02420 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD08_RS02425 PF00310 Glutamine amidotransferases class-II AMD08_RS02425 PF01493 GXGXG motif AMD08_RS02425 PF01645 Conserved region in glutamate synthase AMD08_RS02425 PF04898 Glutamate synthase central domain AMD08_RS02430 PF11720 Peptidase inhibitor I78 family AMD08_RS02435 PF01028 Eukaryotic DNA topoisomerase I, catalytic core AMD08_RS02450 PF05368 NmrA-like family AMD08_RS02455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS02455 PF03466 LysR substrate binding domain AMD08_RS02460 PF00534 Glycosyl transferases group 1 AMD08_RS02460 PF13439 Glycosyltransferase Family 4 AMD08_RS02465 PF00534 Glycosyl transferases group 1 AMD08_RS02465 PF13439 Glycosyltransferase Family 4 AMD08_RS02470 PF13727 CoA-binding domain AMD08_RS02475 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD08_RS02480 PF04932 AMD08_RS02480 AMD08_RS02485 PF03808 AMD08_RS02485 AMD08_RS02490 PF13439 Glycosyltransferase Family 4 AMD08_RS02490 PF13692 Glycosyl transferases group 1 AMD08_RS02505 PF13489 Methyltransferase domain AMD08_RS02520 PF05711 Macrocin-O-methyltransferase (TylF) AMD08_RS02525 PF01370 NAD dependent epimerase/dehydratase family AMD08_RS02535 PF01943 AMD08_RS02535 AMD08_RS02535 PF14667 Polysaccharide biosynthesis C-terminal domain AMD08_RS02540 PF00005 ABC transporter AMD08_RS02540 PF00664 ABC transporter transmembrane region AMD08_RS02545 PF13471 AMD08_RS02545 AMD08_RS02560 PF13847 Methyltransferase domain AMD08_RS02565 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMD08_RS02575 PF00685 Sulfotransferase domain AMD08_RS02580 PF13673 Acetyltransferase (GNAT) domain AMD08_RS02585 PF07484 Phage Tail Collar Domain AMD08_RS02590 PF07484 Phage Tail Collar Domain AMD08_RS02595 PF07484 Phage Tail Collar Domain AMD08_RS02600 PF14907 Uncharacterised nucleotidyltransferase AMD08_RS02605 PF03965 Penicillinase repressor AMD08_RS02610 PF05569 BlaR1 peptidase M56 AMD08_RS02620 PF03435 Saccharopine dehydrogenase AMD08_RS02625 PF08975 Domain of unknown function (DUF1868) AMD08_RS02630 PF00593 TonB dependent receptor AMD08_RS02630 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS02635 PF00480 ROK family AMD08_RS02640 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD08_RS02645 PF13482 RNase_H superfamily AMD08_RS02650 PF00270 DEAD/DEAH box helicase AMD08_RS02650 PF00271 Helicase conserved C-terminal domain AMD08_RS02650 PF09369 AMD08_RS02650 AMD08_RS02655 PF03006 AMD08_RS02655 AMD08_RS02660 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMD08_RS02665 PF05016 Plasmid stabilisation system protein AMD08_RS02670 PF00106 short chain dehydrogenase AMD08_RS02675 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS02680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS02680 PF03466 LysR substrate binding domain AMD08_RS02685 PF14305 AMD08_RS02685 AMD08_RS02695 PF02525 Flavodoxin-like fold AMD08_RS02700 PF01527 Transposase AMD08_RS02710 PF13333 AMD08_RS02710 AMD08_RS02720 PF01609 Transposase DDE domain AMD08_RS02755 PF05532 CsbD-like AMD08_RS02760 PF08668 HDOD domain AMD08_RS02765 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMD08_RS02775 PF01447 Thermolysin metallopeptidase, catalytic domain AMD08_RS02775 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD08_RS02780 PF13460 NADH(P)-binding AMD08_RS02785 PF00293 NUDIX domain AMD08_RS02790 PF01435 Peptidase family M48 AMD08_RS02800 PF10116 AMD08_RS02800 AMD08_RS02805 PF00085 Thioredoxin AMD08_RS02815 PF00083 Sugar (and other) transporter AMD08_RS02820 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMD08_RS02825 PF12787 AMD08_RS02825 AMD08_RS02830 PF06080 AMD08_RS02830 AMD08_RS02845 PF07584 AMD08_RS02845 AMD08_RS02850 PF01882 AMD08_RS02850 AMD08_RS02855 PF07726 ATPase family associated with various cellular activities (AAA) AMD08_RS02860 PF13709 Domain of unknown function (DUF4159) AMD08_RS02865 PF01523 Putative modulator of DNA gyrase AMD08_RS02870 PF01523 Putative modulator of DNA gyrase AMD08_RS02875 PF01523 Putative modulator of DNA gyrase AMD08_RS02885 PF00316 Fructose-1-6-bisphosphatase AMD08_RS02890 PF00155 Aminotransferase class I and II AMD08_RS02895 PF00593 TonB dependent receptor AMD08_RS02895 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS02905 PF07883 Cupin domain AMD08_RS02910 PF00171 Aldehyde dehydrogenase family AMD08_RS02915 PF05610 AMD08_RS02915 AMD08_RS02930 PF02735 Ku70/Ku80 beta-barrel domain AMD08_RS02935 PF01070 FMN-dependent dehydrogenase AMD08_RS02945 PF00144 Beta-lactamase AMD08_RS02950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS02950 PF07730 Histidine kinase AMD08_RS02955 PF00072 Response regulator receiver domain AMD08_RS02955 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS02975 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS02975 PF13191 AAA ATPase domain AMD08_RS02980 PF07055 Enoyl reductase FAD binding domain AMD08_RS02980 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMD08_RS02980 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMD08_RS02990 PF00294 pfkB family carbohydrate kinase AMD08_RS02995 PF00593 TonB dependent receptor AMD08_RS02995 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS03000 PF13385 Concanavalin A-like lectin/glucanases superfamily AMD08_RS03015 PF13619 AMD08_RS03015 AMD08_RS03020 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AMD08_RS03045 PF01527 Transposase AMD08_RS03050 PF00665 Integrase core domain AMD08_RS03050 PF13276 AMD08_RS03050 AMD08_RS03055 PF00128 Alpha amylase, catalytic domain AMD08_RS03055 PF11896 Domain of unknown function (DUF3416) AMD08_RS03060 PF00128 Alpha amylase, catalytic domain AMD08_RS03060 PF16657 AMD08_RS03060 AMD08_RS03065 PF00128 Alpha amylase, catalytic domain AMD08_RS03065 PF02806 Alpha amylase, C-terminal all-beta domain AMD08_RS03065 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD08_RS03070 PF12850 Calcineurin-like phosphoesterase superfamily domain AMD08_RS03075 PF00248 Aldo/keto reductase family AMD08_RS03080 PF00135 Carboxylesterase family AMD08_RS03085 PF07859 alpha/beta hydrolase fold AMD08_RS03095 PF03480 Bacterial extracellular solute-binding protein, family 7 AMD08_RS03100 PF04290 AMD08_RS03100 AMD08_RS03105 PF06808 AMD08_RS03105 AMD08_RS03110 PF04616 Glycosyl hydrolases family 43 AMD08_RS03115 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS03115 PF13377 Periplasmic binding protein-like domain AMD08_RS03120 PF04962 KduI/IolB family AMD08_RS03125 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS03130 PF02502 Ribose/Galactose Isomerase AMD08_RS03130 PF12408 Ribose-5-phosphate isomerase AMD08_RS03135 PF07883 Cupin domain AMD08_RS03135 PF13472 GDSL-like Lipase/Acylhydrolase family AMD08_RS03145 PF14300 Domain of unknown function (DUF4375) AMD08_RS03150 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMD08_RS03155 PF01037 AsnC family AMD08_RS03155 PF13404 AsnC-type helix-turn-helix domain AMD08_RS03160 PF00593 TonB dependent receptor AMD08_RS03160 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS03165 PF01734 Patatin-like phospholipase AMD08_RS03170 PF01987 Mitochondrial biogenesis AIM24 AMD08_RS03175 PF00005 ABC transporter AMD08_RS03180 PF00487 AMD08_RS03180 AMD08_RS03185 PF13202 EF hand AMD08_RS03190 PF00005 ABC transporter AMD08_RS03195 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS03195 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMD08_RS03200 PF00266 Aminotransferase class-V AMD08_RS03205 PF03781 Sulfatase-modifying factor enzyme 1 AMD08_RS03205 PF12867 DinB superfamily AMD08_RS03210 PF10017 AMD08_RS03210 AMD08_RS03215 PF11625 Protein of unknown function (DUF3253) AMD08_RS03220 PF07805 HipA-like N-terminal domain AMD08_RS03220 PF13657 HipA N-terminal domain AMD08_RS03225 PF13560 Helix-turn-helix domain AMD08_RS03230 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMD08_RS03240 PF03547 AMD08_RS03240 AMD08_RS03250 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD08_RS03255 PF00300 Histidine phosphatase superfamily (branch 1) AMD08_RS03260 PF04264 YceI-like domain AMD08_RS03265 PF13091 PLD-like domain AMD08_RS03270 PF03061 Thioesterase superfamily AMD08_RS03275 PF01553 Acyltransferase AMD08_RS03280 PF12146 Putative lysophospholipase AMD08_RS03290 PF13432 Tetratricopeptide repeat AMD08_RS03295 PF01161 Phosphatidylethanolamine-binding protein AMD08_RS03300 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS03305 PF03724 META domain AMD08_RS03305 PF14302 AMD08_RS03305 AMD08_RS03310 PF02673 AMD08_RS03310 AMD08_RS03315 PF00120 Glutamine synthetase, catalytic domain AMD08_RS03315 PF03951 Glutamine synthetase, beta-Grasp domain AMD08_RS03320 PF00543 Nitrogen regulatory protein P-II AMD08_RS03325 PF00909 Ammonium Transporter Family AMD08_RS03330 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS03335 PF00072 Response regulator receiver domain AMD08_RS03335 PF00158 Sigma-54 interaction domain AMD08_RS03335 PF02954 Bacterial regulatory protein, Fis family AMD08_RS03340 PF00080 Copper/zinc superoxide dismutase (SODC) AMD08_RS03345 PF00080 Copper/zinc superoxide dismutase (SODC) AMD08_RS03360 PF00108 Thiolase, N-terminal domain AMD08_RS03360 PF02803 Thiolase, C-terminal domain AMD08_RS03365 PF07219 AMD08_RS03365 AMD08_RS03370 PF04375 AMD08_RS03370 AMD08_RS03375 PF02602 Uroporphyrinogen-III synthase HemD AMD08_RS03380 PF01755 AMD08_RS03380 AMD08_RS03385 PF09500 Putative thioesterase (yiiD_Cterm) AMD08_RS03395 PF00581 Rhodanese-like domain AMD08_RS03400 PF02556 Preprotein translocase subunit SecB AMD08_RS03405 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD08_RS03405 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD08_RS03410 PF13505 Outer membrane protein beta-barrel domain AMD08_RS03415 PF00205 Thiamine pyrophosphate enzyme, central domain AMD08_RS03415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD08_RS03415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD08_RS03420 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS03420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS03425 PF00072 Response regulator receiver domain AMD08_RS03425 PF00158 Sigma-54 interaction domain AMD08_RS03425 PF02954 Bacterial regulatory protein, Fis family AMD08_RS03440 PF07690 Major Facilitator Superfamily AMD08_RS03445 PF00588 SpoU rRNA Methylase family AMD08_RS03455 PF13698 AMD08_RS03455 AMD08_RS03460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD08_RS03460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD08_RS03470 PF00561 alpha/beta hydrolase fold AMD08_RS03475 PF03692 AMD08_RS03475 AMD08_RS03480 PF00501 AMP-binding enzyme AMD08_RS03485 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD08_RS03490 PF07043 AMD08_RS03490 AMD08_RS03500 PF01820 D-ala D-ala ligase N-terminus AMD08_RS03505 PF02036 SCP-2 sterol transfer family AMD08_RS03510 PF03109 AMD08_RS03510 AMD08_RS03515 PF07883 Cupin domain AMD08_RS03520 PF00849 RNA pseudouridylate synthase AMD08_RS03525 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) AMD08_RS03530 PF00472 RF-1 domain AMD08_RS03535 PF01553 Acyltransferase AMD08_RS03540 PF01112 Asparaginase AMD08_RS03545 PF01432 Peptidase family M3 AMD08_RS03550 PF12706 Beta-lactamase superfamily domain AMD08_RS03560 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS03560 PF14246 AefR-like transcriptional repressor, C-terminal region AMD08_RS03565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS03570 PF12833 Helix-turn-helix domain AMD08_RS03575 PF00999 Sodium/hydrogen exchanger family AMD08_RS03580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS03580 PF03466 LysR substrate binding domain AMD08_RS03585 PF01274 Malate synthase AMD08_RS03595 PF00027 Cyclic nucleotide-binding domain AMD08_RS03595 PF00990 GGDEF domain AMD08_RS03600 PF13174 Tetratricopeptide repeat AMD08_RS03600 PF14559 Tetratricopeptide repeat AMD08_RS03610 PF00881 Nitroreductase family AMD08_RS03615 PF00326 Prolyl oligopeptidase family AMD08_RS03620 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMD08_RS03620 PF00364 Biotin-requiring enzyme AMD08_RS03620 PF02785 Biotin carboxylase C-terminal domain AMD08_RS03620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD08_RS03625 PF01039 Carboxyl transferase domain AMD08_RS03630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD08_RS03630 PF02770 Acyl-CoA dehydrogenase, middle domain AMD08_RS03630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD08_RS03635 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS03645 PF08808 AMD08_RS03645 AMD08_RS03650 PF11804 AMD08_RS03650 AMD08_RS03655 PF03929 AMD08_RS03655 AMD08_RS03660 PF12365 AMD08_RS03660 AMD08_RS03670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD08_RS03675 PF03372 Endonuclease/Exonuclease/phosphatase family AMD08_RS03680 PF03203 AMD08_RS03680 AMD08_RS03685 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMD08_RS03685 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMD08_RS03705 PF12146 Putative lysophospholipase AMD08_RS03710 PF03969 AFG1-like ATPase AMD08_RS03715 PF01047 MarR family AMD08_RS03720 PF02566 OsmC-like protein AMD08_RS03730 PF12697 Alpha/beta hydrolase family AMD08_RS03735 PF11101 AMD08_RS03735 AMD08_RS03750 PF00107 Zinc-binding dehydrogenase AMD08_RS03750 PF16884 AMD08_RS03750 AMD08_RS03755 PF00248 Aldo/keto reductase family AMD08_RS03765 PF00849 RNA pseudouridylate synthase AMD08_RS03780 PF00271 Helicase conserved C-terminal domain AMD08_RS03780 PF04408 Helicase associated domain (HA2) AMD08_RS03780 PF08482 AMD08_RS03780 AMD08_RS03790 PF07308 AMD08_RS03790 AMD08_RS03795 PF00576 HIUase/Transthyretin family AMD08_RS03800 PF13738 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS03805 PF09349 OHCU decarboxylase AMD08_RS03810 PF11533 Protein of unknown function (DUF3225) AMD08_RS03815 PF01522 Polysaccharide deacetylase AMD08_RS03820 PF00266 Aminotransferase class-V AMD08_RS03825 PF01546 Peptidase family M20/M25/M40 AMD08_RS03825 PF07687 Peptidase dimerisation domain AMD08_RS03830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS03830 PF03466 LysR substrate binding domain AMD08_RS03835 PF07690 Major Facilitator Superfamily AMD08_RS03845 PF01019 Gamma-glutamyltranspeptidase AMD08_RS03850 PF01425 Amidase AMD08_RS03855 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD08_RS03860 PF00962 Adenosine/AMP deaminase AMD08_RS03865 PF00860 Permease family AMD08_RS03875 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD08_RS03875 PF00970 Oxidoreductase FAD-binding domain AMD08_RS03880 PF00355 Rieske [2Fe-2S] domain AMD08_RS03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS03885 PF03466 LysR substrate binding domain AMD08_RS03890 PF01026 TatD related DNase AMD08_RS03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS03905 PF03466 LysR substrate binding domain AMD08_RS03910 PF07690 Major Facilitator Superfamily AMD08_RS03915 PF13411 MerR HTH family regulatory protein AMD08_RS03920 PF12697 Alpha/beta hydrolase family AMD08_RS03925 PF02146 Sir2 family AMD08_RS03930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD08_RS03935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD08_RS03935 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD08_RS03945 PF00551 Formyl transferase AMD08_RS03945 PF01842 ACT domain AMD08_RS03950 PF00072 Response regulator receiver domain AMD08_RS03950 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS03955 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS03955 PF00672 HAMP domain AMD08_RS03955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS03960 PF16576 AMD08_RS03960 AMD08_RS03965 PF00873 AcrB/AcrD/AcrF family AMD08_RS03970 PF02321 Outer membrane efflux protein AMD08_RS03980 PF02219 Methylenetetrahydrofolate reductase AMD08_RS03985 PF02677 AMD08_RS03985 AMD08_RS03990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS03990 PF03466 LysR substrate binding domain AMD08_RS03995 PF03358 NADPH-dependent FMN reductase AMD08_RS04000 PF08908 AMD08_RS04000 AMD08_RS04005 PF01717 Cobalamin-independent synthase, Catalytic domain AMD08_RS04010 PF03812 AMD08_RS04010 AMD08_RS04015 PF07396 Phosphate-selective porin O and P AMD08_RS04020 PF05368 NmrA-like family AMD08_RS04025 PF01638 HxlR-like helix-turn-helix AMD08_RS04050 PF00665 Integrase core domain AMD08_RS04050 PF13276 AMD08_RS04050 AMD08_RS04055 PF01527 Transposase AMD08_RS04060 PF00589 Phage integrase family AMD08_RS04065 PF00920 Dehydratase family AMD08_RS04070 PF00150 Cellulase (glycosyl hydrolase family 5) AMD08_RS04085 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS04095 PF07690 Major Facilitator Superfamily AMD08_RS04100 PF11871 AMD08_RS04100 AMD08_RS04100 PF13487 HD domain AMD08_RS04105 PF12802 MarR family AMD08_RS04110 PF13557 AMD08_RS04110 AMD08_RS04115 PF00106 short chain dehydrogenase AMD08_RS04115 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS04120 PF00171 Aldehyde dehydrogenase family AMD08_RS04125 PF02311 AraC-like ligand binding domain AMD08_RS04125 PF12833 Helix-turn-helix domain AMD08_RS04130 PF01494 FAD binding domain AMD08_RS04135 PF12680 SnoaL-like domain AMD08_RS04140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD08_RS04140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD08_RS04145 PF00230 Major intrinsic protein AMD08_RS04150 PF01266 FAD dependent oxidoreductase AMD08_RS04150 PF16901 AMD08_RS04150 AMD08_RS04155 PF00455 AMD08_RS04155 AMD08_RS04155 PF08220 DeoR-like helix-turn-helix domain AMD08_RS04160 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD08_RS04160 PF00175 Oxidoreductase NAD-binding domain AMD08_RS04160 PF00970 Oxidoreductase FAD-binding domain AMD08_RS04165 PF00355 Rieske [2Fe-2S] domain AMD08_RS04170 PF01144 Coenzyme A transferase AMD08_RS04175 PF01144 Coenzyme A transferase AMD08_RS04180 PF00108 Thiolase, N-terminal domain AMD08_RS04180 PF02803 Thiolase, C-terminal domain AMD08_RS04185 PF00775 Dioxygenase AMD08_RS04185 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMD08_RS04190 PF00775 Dioxygenase AMD08_RS04195 PF00206 Lyase AMD08_RS04195 PF10397 Adenylosuccinate lyase C-terminus AMD08_RS04200 PF00561 alpha/beta hydrolase fold AMD08_RS04205 PF02627 Carboxymuconolactone decarboxylase family AMD08_RS04210 PF12146 Putative lysophospholipase AMD08_RS04215 PF01614 Bacterial transcriptional regulator AMD08_RS04215 PF09339 IclR helix-turn-helix domain AMD08_RS04220 PF01163 RIO1 family AMD08_RS04225 PF07859 alpha/beta hydrolase fold AMD08_RS04230 PF10677 AMD08_RS04230 AMD08_RS04235 PF01134 Glucose inhibited division protein A AMD08_RS04235 PF13932 GidA associated domain 3 AMD08_RS04245 PF00291 Pyridoxal-phosphate dependent enzyme AMD08_RS04250 PF02698 DUF218 domain AMD08_RS04255 PF12680 SnoaL-like domain AMD08_RS04260 PF05118 Aspartyl/Asparaginyl beta-hydroxylase AMD08_RS04265 PF08241 Methyltransferase domain AMD08_RS04270 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS04275 PF12697 Alpha/beta hydrolase family AMD08_RS04285 PF00155 Aminotransferase class I and II AMD08_RS04290 PF04055 Radical SAM superfamily AMD08_RS04290 PF06968 Biotin and Thiamin Synthesis associated domain AMD08_RS04295 PF00156 Phosphoribosyl transferase domain AMD08_RS04300 PF01040 UbiA prenyltransferase family AMD08_RS04315 PF05819 AMD08_RS04315 AMD08_RS04325 PF05932 Tir chaperone protein (CesT) family AMD08_RS04350 PF01313 AMD08_RS04350 AMD08_RS04355 PF00813 AMD08_RS04355 AMD08_RS04360 PF01052 Surface presentation of antigens (SPOA) AMD08_RS04365 PF09483 AMD08_RS04365 AMD08_RS04370 PF00771 FHIPEP family AMD08_RS04375 PF01312 FlhB HrpN YscU SpaS Family AMD08_RS04380 PF09613 AMD08_RS04380 AMD08_RS04385 PF09487 AMD08_RS04385 AMD08_RS04390 PF01514 Secretory protein of YscJ/FliF family AMD08_RS04395 PF09502 AMD08_RS04395 AMD08_RS04400 PF02108 AMD08_RS04400 AMD08_RS04405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD08_RS04405 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD08_RS04410 PF09486 AMD08_RS04410 AMD08_RS04415 PF01311 AMD08_RS04415 AMD08_RS04420 PF00263 AMD08_RS04420 AMD08_RS04420 PF03958 Bacterial type II/III secretion system short domain AMD08_RS04430 PF01464 Transglycosylase SLT domain AMD08_RS04440 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD08_RS04445 PF00924 Mechanosensitive ion channel AMD08_RS04445 PF12607 AMD08_RS04445 AMD08_RS04450 PF00884 Sulfatase AMD08_RS04460 PF05661 AMD08_RS04460 AMD08_RS04465 PF00990 GGDEF domain AMD08_RS04470 PF00534 Glycosyl transferases group 1 AMD08_RS04470 PF08323 Starch synthase catalytic domain AMD08_RS04475 PF00128 Alpha amylase, catalytic domain AMD08_RS04475 PF02806 Alpha amylase, C-terminal all-beta domain AMD08_RS04475 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD08_RS04480 PF00128 Alpha amylase, catalytic domain AMD08_RS04480 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD08_RS04480 PF11941 Domain of unknown function (DUF3459) AMD08_RS04485 PF02446 4-alpha-glucanotransferase AMD08_RS04490 PF00128 Alpha amylase, catalytic domain AMD08_RS04495 PF11154 AMD08_RS04495 AMD08_RS04500 PF00128 Alpha amylase, catalytic domain AMD08_RS04500 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD08_RS04505 PF13460 NADH(P)-binding AMD08_RS04510 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS04515 PF00890 FAD binding domain AMD08_RS04515 PF13454 FAD-NAD(P)-binding AMD08_RS04525 PF06903 AMD08_RS04525 AMD08_RS04530 PF02321 Outer membrane efflux protein AMD08_RS04535 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS04540 PF16576 AMD08_RS04540 AMD08_RS04545 PF00873 AcrB/AcrD/AcrF family AMD08_RS04550 PF00106 short chain dehydrogenase AMD08_RS04560 PF00270 DEAD/DEAH box helicase AMD08_RS04560 PF00271 Helicase conserved C-terminal domain AMD08_RS04565 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD08_RS04565 PF00364 Biotin-requiring enzyme AMD08_RS04565 PF02817 e3 binding domain AMD08_RS04570 PF07653 Variant SH3 domain AMD08_RS04575 PF02779 Transketolase, pyrimidine binding domain AMD08_RS04575 PF02780 Transketolase, C-terminal domain AMD08_RS04580 PF00676 Dehydrogenase E1 component AMD08_RS04585 PF00932 Lamin Tail Domain AMD08_RS04585 PF03160 Calx-beta domain AMD08_RS04585 PF03372 Endonuclease/Exonuclease/phosphatase family AMD08_RS04590 PF03301 Tryptophan 2,3-dioxygenase AMD08_RS04595 PF00854 POT family AMD08_RS04600 PF13899 Thioredoxin-like AMD08_RS04605 PF12802 MarR family AMD08_RS04610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS04610 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AMD08_RS04615 PF04209 homogentisate 1,2-dioxygenase AMD08_RS04630 PF03334 AMD08_RS04630 AMD08_RS04635 PF04066 AMD08_RS04635 AMD08_RS04640 PF01899 AMD08_RS04640 AMD08_RS04645 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD08_RS04650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD08_RS04655 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD08_RS04655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD08_RS04655 PF04039 AMD08_RS04655 AMD08_RS04655 PF13244 AMD08_RS04655 AMD08_RS04660 PF01370 NAD dependent epimerase/dehydratase family AMD08_RS04670 PF06127 AMD08_RS04670 AMD08_RS04675 PF01447 Thermolysin metallopeptidase, catalytic domain AMD08_RS04675 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD08_RS04675 PF07504 Fungalysin/Thermolysin Propeptide Motif AMD08_RS04680 PF00182 Chitinase class I AMD08_RS04680 PF01471 Putative peptidoglycan binding domain AMD08_RS04680 PF01551 Peptidase family M23 AMD08_RS04700 PF01259 SAICAR synthetase AMD08_RS04705 PF00226 DnaJ domain AMD08_RS04710 PF13505 Outer membrane protein beta-barrel domain AMD08_RS04715 PF00834 Ribulose-phosphate 3 epimerase family AMD08_RS04720 PF00583 Acetyltransferase (GNAT) family AMD08_RS04725 PF00781 Diacylglycerol kinase catalytic domain AMD08_RS04730 PF00425 chorismate binding enzyme AMD08_RS04730 PF04715 Anthranilate synthase component I, N terminal region AMD08_RS04735 PF01212 Beta-eliminating lyase AMD08_RS04740 PF00117 Glutamine amidotransferase class-I AMD08_RS04745 PF01613 Flavin reductase like domain AMD08_RS04750 PF00591 Glycosyl transferase family, a/b domain AMD08_RS04750 PF02885 Glycosyl transferase family, helical bundle domain AMD08_RS04755 PF00218 Indole-3-glycerol phosphate synthase AMD08_RS04760 PF12710 haloacid dehalogenase-like hydrolase AMD08_RS04765 PF00027 Cyclic nucleotide-binding domain AMD08_RS04765 PF00325 Bacterial regulatory proteins, crp family AMD08_RS04770 PF02675 S-adenosylmethionine decarboxylase AMD08_RS04775 PF00893 Small Multidrug Resistance protein AMD08_RS04780 PF03232 AMD08_RS04780 AMD08_RS04785 PF00572 Ribosomal protein L13 AMD08_RS04790 PF00380 Ribosomal protein S9/S16 AMD08_RS04805 PF00293 NUDIX domain AMD08_RS04810 PF04324 BFD-like [2Fe-2S] binding domain AMD08_RS04815 PF00210 Ferritin-like domain AMD08_RS04820 PF00072 Response regulator receiver domain AMD08_RS04820 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS04820 PF01627 Hpt domain AMD08_RS04820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS04825 PF00072 Response regulator receiver domain AMD08_RS04825 PF00563 EAL domain AMD08_RS04825 PF00990 GGDEF domain AMD08_RS04830 PF13548 AMD08_RS04830 AMD08_RS04840 PF04519 AMD08_RS04840 AMD08_RS04845 PF01521 Iron-sulphur cluster biosynthesis AMD08_RS04855 PF03583 Secretory lipase AMD08_RS04860 PF00293 NUDIX domain AMD08_RS04860 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMD08_RS04860 PF09297 NADH pyrophosphatase zinc ribbon domain AMD08_RS04865 PF03186 AMD08_RS04865 AMD08_RS04870 PF10825 AMD08_RS04870 AMD08_RS04875 PF04505 AMD08_RS04875 AMD08_RS04885 PF01553 Acyltransferase AMD08_RS04885 PF07690 Major Facilitator Superfamily AMD08_RS04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS04890 PF03466 LysR substrate binding domain AMD08_RS04895 PF07690 Major Facilitator Superfamily AMD08_RS04900 PF12805 AMD08_RS04900 AMD08_RS04900 PF13515 AMD08_RS04900 AMD08_RS04910 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD08_RS04910 PF02843 Phosphoribosylglycinamide synthetase, C domain AMD08_RS04910 PF02844 Phosphoribosylglycinamide synthetase, N domain AMD08_RS04920 PF01808 AICARFT/IMPCHase bienzyme AMD08_RS04920 PF02142 MGS-like domain AMD08_RS04925 PF01066 CDP-alcohol phosphatidyltransferase AMD08_RS04930 PF12146 Putative lysophospholipase AMD08_RS04930 PF12147 AMD08_RS04930 AMD08_RS04935 PF00782 Dual specificity phosphatase, catalytic domain AMD08_RS04950 PF01066 CDP-alcohol phosphatidyltransferase AMD08_RS04955 PF01553 Acyltransferase AMD08_RS04960 PF01148 Cytidylyltransferase family AMD08_RS04965 PF02954 Bacterial regulatory protein, Fis family AMD08_RS04970 PF11906 AMD08_RS04970 AMD08_RS04980 PF01381 Helix-turn-helix AMD08_RS04990 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AMD08_RS05010 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMD08_RS05010 PF02785 Biotin carboxylase C-terminal domain AMD08_RS05010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD08_RS05015 PF05635 23S rRNA-intervening sequence protein AMD08_RS05020 PF00364 Biotin-requiring enzyme AMD08_RS05025 PF01220 Dehydroquinase class II AMD08_RS05030 PF02683 AMD08_RS05030 AMD08_RS05030 PF11412 Disulphide bond corrector protein DsbC AMD08_RS05030 PF13899 Thioredoxin-like AMD08_RS05035 PF03091 CutA1 divalent ion tolerance protein AMD08_RS05040 PF12625 AMD08_RS05040 AMD08_RS05040 PF12833 Helix-turn-helix domain AMD08_RS05050 PF01852 START domain AMD08_RS05060 PF00106 short chain dehydrogenase AMD08_RS05065 PF00932 Lamin Tail Domain AMD08_RS05065 PF04231 Endonuclease I AMD08_RS05065 PF13205 Bacterial Ig-like domain AMD08_RS05070 PF00166 Chaperonin 10 Kd subunit AMD08_RS05075 PF00118 TCP-1/cpn60 chaperonin family AMD08_RS05085 PF00593 TonB dependent receptor AMD08_RS05085 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS05090 PF00793 DAHP synthetase I family AMD08_RS05105 PF08450 SMP-30/Gluconolaconase/LRE-like region AMD08_RS05115 PF03710 Glutamate-ammonia ligase adenylyltransferase AMD08_RS05115 PF08335 GlnD PII-uridylyltransferase AMD08_RS05120 PF02592 AMD08_RS05120 AMD08_RS05130 PF00082 Subtilase family AMD08_RS05130 PF09286 Pro-kumamolisin, activation domain AMD08_RS05135 PF06258 AMD08_RS05135 AMD08_RS05140 PF00881 Nitroreductase family AMD08_RS05145 PF04264 YceI-like domain AMD08_RS05155 PF00328 Histidine phosphatase superfamily (branch 2) AMD08_RS05160 PF04954 Siderophore-interacting protein AMD08_RS05160 PF08021 Siderophore-interacting FAD-binding domain AMD08_RS05165 PF03551 Transcriptional regulator PadR-like family AMD08_RS05170 PF16957 AMD08_RS05170 AMD08_RS05175 PF06857 AMD08_RS05175 AMD08_RS05180 PF01039 Carboxyl transferase domain AMD08_RS05185 PF06833 Malonate decarboxylase gamma subunit (MdcE) AMD08_RS05190 PF10620 AMD08_RS05190 AMD08_RS05195 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AMD08_RS05200 PF00698 Acyl transferase domain AMD08_RS05205 PF03600 Citrate transporter AMD08_RS05205 PF07158 AMD08_RS05205 AMD08_RS05210 PF00392 Bacterial regulatory proteins, gntR family AMD08_RS05210 PF07729 FCD domain AMD08_RS05215 PF13419 Haloacid dehalogenase-like hydrolase AMD08_RS05220 PF01740 STAS domain AMD08_RS05225 PF13581 Histidine kinase-like ATPase domain AMD08_RS05230 PF00672 HAMP domain AMD08_RS05230 PF02743 Cache domain AMD08_RS05230 PF07228 Stage II sporulation protein E (SpoIIE) AMD08_RS05240 PF01764 Lipase (class 3) AMD08_RS05245 PF07745 Glycosyl hydrolase family 53 AMD08_RS05250 PF00456 Transketolase, thiamine diphosphate binding domain AMD08_RS05255 PF13333 AMD08_RS05255 AMD08_RS05265 PF01527 Transposase AMD08_RS05270 PF00106 short chain dehydrogenase AMD08_RS05275 PF12833 Helix-turn-helix domain AMD08_RS05275 PF12852 Cupin AMD08_RS05285 PF00106 short chain dehydrogenase AMD08_RS05285 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS05290 PF01145 SPFH domain / Band 7 family AMD08_RS05295 PF13409 Glutathione S-transferase, N-terminal domain AMD08_RS05295 PF13410 Glutathione S-transferase, C-terminal domain AMD08_RS05300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS05305 PF13548 AMD08_RS05305 AMD08_RS05315 PF07791 AMD08_RS05315 AMD08_RS05320 PF01527 Transposase AMD08_RS05330 PF13333 AMD08_RS05330 AMD08_RS05335 PF07791 AMD08_RS05335 AMD08_RS05340 PF01433 Peptidase family M1 AMD08_RS05340 PF11838 ERAP1-like C-terminal domain AMD08_RS05345 PF13302 Acetyltransferase (GNAT) domain AMD08_RS05350 PF00588 SpoU rRNA Methylase family AMD08_RS05350 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD08_RS05355 PF00135 Carboxylesterase family AMD08_RS05360 PF03080 AMD08_RS05360 AMD08_RS05365 PF10566 Glycoside hydrolase 97 AMD08_RS05365 PF14508 Glycosyl-hydrolase 97 N-terminal AMD08_RS05365 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD08_RS05370 PF00703 Glycosyl hydrolases family 2 AMD08_RS05370 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD08_RS05370 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD08_RS05370 PF13385 Concanavalin A-like lectin/glucanases superfamily AMD08_RS05375 PF00593 TonB dependent receptor AMD08_RS05375 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS05380 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS05380 PF13377 Periplasmic binding protein-like domain AMD08_RS05390 PF04389 Peptidase family M28 AMD08_RS05395 PF01741 Large-conductance mechanosensitive channel, MscL AMD08_RS05400 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD08_RS05410 PF00355 Rieske [2Fe-2S] domain AMD08_RS05415 PF02080 TrkA-C domain AMD08_RS05415 PF03600 Citrate transporter AMD08_RS05420 PF02390 Putative methyltransferase AMD08_RS05425 PF05690 Thiazole biosynthesis protein ThiG AMD08_RS05430 PF02597 ThiS family AMD08_RS05435 PF00657 GDSL-like Lipase/Acylhydrolase AMD08_RS05435 PF03797 Autotransporter beta-domain AMD08_RS05445 PF00589 Phage integrase family AMD08_RS05450 PF05593 AMD08_RS05450 AMD08_RS05455 PF05593 AMD08_RS05455 AMD08_RS05480 PF01381 Helix-turn-helix AMD08_RS05485 PF13280 AMD08_RS05485 AMD08_RS05495 PF14464 Prokaryotic homologs of the JAB domain AMD08_RS05505 PF00589 Phage integrase family AMD08_RS05520 PF04002 RadC-like JAB domain AMD08_RS05535 PF07791 AMD08_RS05535 AMD08_RS05540 PF14412 AMD08_RS05540 AMD08_RS05555 PF01555 DNA methylase AMD08_RS05560 PF04851 Type III restriction enzyme, res subunit AMD08_RS05565 PF14082 AMD08_RS05565 AMD08_RS05580 PF00665 Integrase core domain AMD08_RS05580 PF13936 Helix-turn-helix domain AMD08_RS05585 PF01695 IstB-like ATP binding protein AMD08_RS05600 PF13391 AMD08_RS05600 AMD08_RS05610 PF03389 MobA/MobL family AMD08_RS05620 PF00565 Staphylococcal nuclease homologue AMD08_RS05630 PF00816 H-NS histone family AMD08_RS05635 PF00128 Alpha amylase, catalytic domain AMD08_RS05635 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD08_RS05650 PF00072 Response regulator receiver domain AMD08_RS05650 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS05655 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS05655 PF00672 HAMP domain AMD08_RS05655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS05660 PF00665 Integrase core domain AMD08_RS05660 PF13276 AMD08_RS05660 AMD08_RS05665 PF01527 Transposase AMD08_RS05670 PF08845 AMD08_RS05670 AMD08_RS05675 PF05593 AMD08_RS05675 AMD08_RS05680 PF01121 Dephospho-CoA kinase AMD08_RS05685 PF01478 Type IV leader peptidase family AMD08_RS05685 PF06750 AMD08_RS05685 AMD08_RS05695 PF00114 Pilin (bacterial filament) AMD08_RS05695 PF13633 Prokaryotic N-terminal methylation site AMD08_RS05700 PF00114 Pilin (bacterial filament) AMD08_RS05700 PF13633 Prokaryotic N-terminal methylation site AMD08_RS05705 PF00437 Type II/IV secretion system protein AMD08_RS05705 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD08_RS05715 PF00072 Response regulator receiver domain AMD08_RS05715 PF00158 Sigma-54 interaction domain AMD08_RS05715 PF02954 Bacterial regulatory protein, Fis family AMD08_RS05720 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS05720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS05725 PF00549 CoA-ligase AMD08_RS05725 PF08442 ATP-grasp domain AMD08_RS05730 PF00549 CoA-ligase AMD08_RS05730 PF02629 CoA binding domain AMD08_RS05740 PF12760 Transposase zinc-ribbon domain AMD08_RS05740 PF12762 AMD08_RS05740 AMD08_RS05755 PF01129 NAD:arginine ADP-ribosyltransferase AMD08_RS05765 PF00665 Integrase core domain AMD08_RS05765 PF13936 Helix-turn-helix domain AMD08_RS05775 PF00959 Phage lysozyme AMD08_RS05790 PF04550 AMD08_RS05790 AMD08_RS05805 PF01527 Transposase AMD08_RS05810 PF00665 Integrase core domain AMD08_RS05810 PF13276 AMD08_RS05810 AMD08_RS05815 PF14700 DNA-directed RNA polymerase N-terminal AMD08_RS05875 PF13155 Toprim-like AMD08_RS05890 PF04606 AMD08_RS05890 AMD08_RS05905 PF05954 Phage late control gene D protein (GPD) AMD08_RS05910 PF06995 AMD08_RS05910 AMD08_RS05915 PF10145 AMD08_RS05915 AMD08_RS05920 PF10109 AMD08_RS05920 AMD08_RS05925 PF04985 AMD08_RS05925 AMD08_RS05930 PF04984 Phage tail sheath protein AMD08_RS05935 PF04965 Gene 25-like lysozyme AMD08_RS05940 PF04717 Phage-related baseplate assembly protein AMD08_RS05960 PF09684 AMD08_RS05960 AMD08_RS05965 PF04865 AMD08_RS05965 AMD08_RS05970 PF00072 Response regulator receiver domain AMD08_RS05975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS05975 PF08448 PAS fold AMD08_RS05980 PF05069 AMD08_RS05980 AMD08_RS05985 PF06891 AMD08_RS05985 AMD08_RS06000 PF05449 AMD08_RS06000 AMD08_RS06005 PF16931 AMD08_RS06005 AMD08_RS06010 PF05489 Phage Tail Protein X AMD08_RS06015 PF05926 AMD08_RS06015 AMD08_RS06020 PF05944 AMD08_RS06020 AMD08_RS06025 PF05125 AMD08_RS06025 AMD08_RS06030 PF05929 AMD08_RS06030 AMD08_RS06035 PF03237 Terminase-like family AMD08_RS06035 PF06056 Putative ATPase subunit of terminase (gpP-like) AMD08_RS06040 PF04860 Phage portal protein AMD08_RS06045 PF01555 DNA methylase AMD08_RS06050 PF01695 IstB-like ATP binding protein AMD08_RS06055 PF06114 Domain of unknown function (DUF955) AMD08_RS06060 PF00817 impB/mucB/samB family AMD08_RS06060 PF11799 impB/mucB/samB family C-terminal domain AMD08_RS06060 PF13438 AMD08_RS06060 AMD08_RS06065 PF00717 Peptidase S24-like AMD08_RS06070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS06080 PF05697 Bacterial trigger factor protein (TF) AMD08_RS06080 PF05698 Bacterial trigger factor protein (TF) C-terminus AMD08_RS06085 PF00574 Clp protease AMD08_RS06090 PF06689 ClpX C4-type zinc finger AMD08_RS06090 PF07724 AAA domain (Cdc48 subfamily) AMD08_RS06090 PF10431 C-terminal, D2-small domain, of ClpB protein AMD08_RS06095 PF00004 ATPase family associated with various cellular activities (AAA) AMD08_RS06095 PF02190 ATP-dependent protease La (LON) domain AMD08_RS06095 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD08_RS06100 PF00216 Bacterial DNA-binding protein AMD08_RS06120 PF13145 PPIC-type PPIASE domain AMD08_RS06120 PF13616 PPIC-type PPIASE domain AMD08_RS06120 PF13623 AMD08_RS06120 AMD08_RS06125 PF01464 Transglycosylase SLT domain AMD08_RS06125 PF01476 LysM domain AMD08_RS06130 PF00753 Metallo-beta-lactamase superfamily AMD08_RS06130 PF16123 AMD08_RS06130 AMD08_RS06140 PF00075 RNase H AMD08_RS06145 PF00929 Exonuclease AMD08_RS06150 PF13672 Protein phosphatase 2C AMD08_RS06165 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMD08_RS06170 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family AMD08_RS06175 PF12706 Beta-lactamase superfamily domain AMD08_RS06180 PF04055 Radical SAM superfamily AMD08_RS06180 PF06463 Molybdenum Cofactor Synthesis C AMD08_RS06180 PF13353 4Fe-4S single cluster domain AMD08_RS06190 PF01967 MoaC family AMD08_RS06195 PF02597 ThiS family AMD08_RS06200 PF02391 MoaE protein AMD08_RS06205 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS06210 PF01527 Transposase AMD08_RS06215 PF00665 Integrase core domain AMD08_RS06215 PF13276 AMD08_RS06215 AMD08_RS06220 PF03389 MobA/MobL family AMD08_RS06235 PF00589 Phage integrase family AMD08_RS06245 PF12169 DNA polymerase III subunits gamma and tau domain III AMD08_RS06245 PF12170 DNA polymerase III tau subunit V interacting with alpha AMD08_RS06245 PF13177 DNA polymerase III, delta subunit AMD08_RS06250 PF02575 YbaB/EbfC DNA-binding family AMD08_RS06255 PF02132 RecR protein AMD08_RS06255 PF13662 Toprim domain AMD08_RS06260 PF01230 HIT domain AMD08_RS06265 PF03843 AMD08_RS06265 AMD08_RS06270 PF01841 Transglutaminase-like superfamily AMD08_RS06270 PF11992 AMD08_RS06270 AMD08_RS06275 PF01882 AMD08_RS06275 AMD08_RS06280 PF07726 ATPase family associated with various cellular activities (AAA) AMD08_RS06285 PF13231 AMD08_RS06285 AMD08_RS06305 PF02545 Maf-like protein AMD08_RS06310 PF02620 AMD08_RS06310 AMD08_RS06315 PF01783 Ribosomal L32p protein family AMD08_RS06320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD08_RS06320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD08_RS06325 PF08670 AMD08_RS06325 AMD08_RS06330 PF00698 Acyl transferase domain AMD08_RS06335 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS06340 PF00550 Phosphopantetheine attachment site AMD08_RS06345 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD08_RS06345 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD08_RS06350 PF00425 chorismate binding enzyme AMD08_RS06355 PF02618 YceG-like family AMD08_RS06360 PF13177 DNA polymerase III, delta subunit AMD08_RS06365 PF07238 PilZ domain AMD08_RS06380 PF00158 Sigma-54 interaction domain AMD08_RS06380 PF02954 Bacterial regulatory protein, Fis family AMD08_RS06380 PF06506 Propionate catabolism activator AMD08_RS06385 PF13714 Phosphoenolpyruvate phosphomutase AMD08_RS06390 PF00285 Citrate synthase AMD08_RS06395 PF00330 Aconitase family (aconitate hydratase) AMD08_RS06395 PF00694 Aconitase C-terminal domain AMD08_RS06400 PF03693 Uncharacterised protein family (UPF0156) AMD08_RS06405 PF04303 PrpF protein AMD08_RS06410 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS06415 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD08_RS06425 PF00207 Alpha-2-macroglobulin family AMD08_RS06425 PF01835 MG2 domain AMD08_RS06425 PF07703 Alpha-2-macroglobulin family N-terminal region AMD08_RS06425 PF11974 Alpha-2-macroglobulin MG1 domain AMD08_RS06430 PF00593 TonB dependent receptor AMD08_RS06430 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS06435 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD08_RS06435 PF16387 AMD08_RS06435 AMD08_RS06440 PF00905 Penicillin binding protein transpeptidase domain AMD08_RS06440 PF00912 Transglycosylase AMD08_RS06440 PF06832 AMD08_RS06440 AMD08_RS06445 PF00210 Ferritin-like domain AMD08_RS06450 PF08534 Redoxin AMD08_RS06455 PF00011 Hsp20/alpha crystallin family AMD08_RS06460 PF00226 DnaJ domain AMD08_RS06460 PF01556 DnaJ C terminal domain AMD08_RS06465 PF00072 Response regulator receiver domain AMD08_RS06470 PF01145 SPFH domain / Band 7 family AMD08_RS06475 PF01145 SPFH domain / Band 7 family AMD08_RS06480 PF01797 Transposase IS200 like AMD08_RS06485 PF00709 Adenylosuccinate synthetase AMD08_RS06490 PF01433 Peptidase family M1 AMD08_RS06490 PF11838 ERAP1-like C-terminal domain AMD08_RS06500 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS06505 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS06545 PF05016 Plasmid stabilisation system protein AMD08_RS06555 PF00069 Protein kinase domain AMD08_RS06570 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS06575 PF00300 Histidine phosphatase superfamily (branch 1) AMD08_RS06580 PF01256 Carbohydrate kinase AMD08_RS06585 PF02055 O-Glycosyl hydrolase family 30 AMD08_RS06585 PF17189 AMD08_RS06585 AMD08_RS06590 PF00723 Glycosyl hydrolases family 15 AMD08_RS06595 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS06600 PF07971 Glycosyl hydrolase family 92 AMD08_RS06605 PF00106 short chain dehydrogenase AMD08_RS06615 PF13532 2OG-Fe(II) oxygenase superfamily AMD08_RS06620 PF00027 Cyclic nucleotide-binding domain AMD08_RS06620 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS06625 PF02148 Zn-finger in ubiquitin-hydrolases and other protein AMD08_RS06630 PF00563 EAL domain AMD08_RS06635 PF13328 HD domain AMD08_RS06640 PF00005 ABC transporter AMD08_RS06645 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD08_RS06645 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD08_RS06650 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD08_RS06650 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD08_RS06655 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD08_RS06655 PF01799 [2Fe-2S] binding domain AMD08_RS06660 PF05559 AMD08_RS06660 AMD08_RS06670 PF07883 Cupin domain AMD08_RS06680 PF02661 Fic/DOC family AMD08_RS06685 PF04014 Antidote-toxin recognition MazE AMD08_RS06690 PF00717 Peptidase S24-like AMD08_RS06690 PF01726 LexA DNA binding domain AMD08_RS06700 PF00817 impB/mucB/samB family AMD08_RS06705 PF02811 PHP domain AMD08_RS06705 PF07733 Bacterial DNA polymerase III alpha subunit AMD08_RS06705 PF14579 Helix-hairpin-helix motif AMD08_RS06710 PF00326 Prolyl oligopeptidase family AMD08_RS06715 PF08668 HDOD domain AMD08_RS06720 PF03169 AMD08_RS06720 AMD08_RS06725 PF13557 AMD08_RS06725 AMD08_RS06735 PF00326 Prolyl oligopeptidase family AMD08_RS06735 PF07676 WD40-like Beta Propeller Repeat AMD08_RS06750 PF08448 PAS fold AMD08_RS06750 PF12833 Helix-turn-helix domain AMD08_RS06775 PF00270 DEAD/DEAH box helicase AMD08_RS06775 PF00271 Helicase conserved C-terminal domain AMD08_RS06775 PF02559 CarD-like/TRCF domain AMD08_RS06775 PF03461 TRCF domain AMD08_RS06780 PF00583 Acetyltransferase (GNAT) family AMD08_RS06785 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AMD08_RS06790 PF00072 Response regulator receiver domain AMD08_RS06790 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS06795 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS06795 PF00672 HAMP domain AMD08_RS06795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS06800 PF00112 Papain family cysteine protease AMD08_RS06805 PF06123 AMD08_RS06805 AMD08_RS06820 PF00795 Carbon-nitrogen hydrolase AMD08_RS06825 PF12275 AMD08_RS06825 AMD08_RS06830 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD08_RS06835 PF01475 Ferric uptake regulator family AMD08_RS06840 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS06840 PF14246 AefR-like transcriptional repressor, C-terminal region AMD08_RS06845 PF00529 HlyD family secretion protein AMD08_RS06845 PF16576 AMD08_RS06845 AMD08_RS06850 PF00873 AcrB/AcrD/AcrF family AMD08_RS06855 PF02321 Outer membrane efflux protein AMD08_RS06860 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS06865 PF07883 Cupin domain AMD08_RS06870 PF06719 AMD08_RS06870 AMD08_RS06870 PF12833 Helix-turn-helix domain AMD08_RS06880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS06880 PF03466 LysR substrate binding domain AMD08_RS06885 PF07690 Major Facilitator Superfamily AMD08_RS06890 PF00248 Aldo/keto reductase family AMD08_RS06900 PF00082 Subtilase family AMD08_RS06900 PF01483 Proprotein convertase P-domain AMD08_RS06910 PF00082 Subtilase family AMD08_RS06910 PF01483 Proprotein convertase P-domain AMD08_RS06915 PF00593 TonB dependent receptor AMD08_RS06915 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS06920 PF00593 TonB dependent receptor AMD08_RS06920 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS06925 PF03203 AMD08_RS06925 AMD08_RS06930 PF17067 AMD08_RS06930 AMD08_RS06935 PF00107 Zinc-binding dehydrogenase AMD08_RS06935 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS06940 PF00654 Voltage gated chloride channel AMD08_RS06945 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AMD08_RS06950 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD08_RS06950 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMD08_RS06955 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD08_RS06955 PF02805 Metal binding domain of Ada AMD08_RS06955 PF06029 AlkA N-terminal domain AMD08_RS06955 PF12833 Helix-turn-helix domain AMD08_RS06970 PF13211 AMD08_RS06970 AMD08_RS06975 PF01124 MAPEG family AMD08_RS06985 PF13275 S4 domain AMD08_RS06995 PF04542 Sigma-70 region 2 AMD08_RS06995 PF08281 Sigma-70, region 4 AMD08_RS07000 PF00270 DEAD/DEAH box helicase AMD08_RS07000 PF00271 Helicase conserved C-terminal domain AMD08_RS07000 PF03880 DbpA RNA binding domain AMD08_RS07005 PF00563 EAL domain AMD08_RS07005 PF00990 GGDEF domain AMD08_RS07005 PF08447 PAS fold AMD08_RS07010 PF00849 RNA pseudouridylate synthase AMD08_RS07010 PF01479 S4 domain AMD08_RS07015 PF00990 GGDEF domain AMD08_RS07015 PF01590 GAF domain AMD08_RS07020 PF00892 EamA-like transporter family AMD08_RS07025 PF01904 Protein of unknown function DUF72 AMD08_RS07035 PF03737 Demethylmenaquinone methyltransferase AMD08_RS07040 PF00144 Beta-lactamase AMD08_RS07040 PF11954 AMD08_RS07040 AMD08_RS07045 PF00999 Sodium/hydrogen exchanger family AMD08_RS07050 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS07050 PF00672 HAMP domain AMD08_RS07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS07055 PF00072 Response regulator receiver domain AMD08_RS07055 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS07060 PF02321 Outer membrane efflux protein AMD08_RS07065 PF06629 AMD08_RS07065 AMD08_RS07070 PF16576 AMD08_RS07070 AMD08_RS07075 PF00873 AcrB/AcrD/AcrF family AMD08_RS07080 PF07929 Plasmid pRiA4b ORF-3-like protein AMD08_RS07085 PF00005 ABC transporter AMD08_RS07085 PF00664 ABC transporter transmembrane region AMD08_RS07090 PF05960 Bacterial protein of unknown function (DUF885) AMD08_RS07100 PF14257 AMD08_RS07100 AMD08_RS07115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS07115 PF03466 LysR substrate binding domain AMD08_RS07120 PF00892 EamA-like transporter family AMD08_RS07125 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD08_RS07130 PF04070 AMD08_RS07130 AMD08_RS07145 PF14539 Domain of unknown function (DUF4442) AMD08_RS07155 PF00085 Thioredoxin AMD08_RS07155 PF14559 Tetratricopeptide repeat AMD08_RS07155 PF14561 Tetratricopeptide repeat AMD08_RS07160 PF06197 AMD08_RS07160 AMD08_RS07165 PF00133 tRNA synthetases class I (I, L, M and V) AMD08_RS07165 PF08264 Anticodon-binding domain of tRNA AMD08_RS07165 PF13603 Leucyl-tRNA synthetase, Domain 2 AMD08_RS07170 PF04390 Lipopolysaccharide-assembly AMD08_RS07175 PF06144 DNA polymerase III, delta subunit AMD08_RS07180 PF01467 Cytidylyltransferase AMD08_RS07185 PF02410 Oligomerisation domain AMD08_RS07190 PF05787 Bacterial protein of unknown function (DUF839) AMD08_RS07190 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMD08_RS07195 PF02590 Predicted SPOUT methyltransferase AMD08_RS07200 PF03544 Gram-negative bacterial TonB protein C-terminal AMD08_RS07205 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS07205 PF13620 Carboxypeptidase regulatory-like domain AMD08_RS07210 PF04402 Protein of unknown function (DUF541) AMD08_RS07215 PF02545 Maf-like protein AMD08_RS07220 PF10150 Ribonuclease E/G family AMD08_RS07225 PF13116 AMD08_RS07225 AMD08_RS07225 PF13502 AMD08_RS07225 AMD08_RS07235 PF01523 Putative modulator of DNA gyrase AMD08_RS07240 PF04751 Protein of unknown function (DUF615) AMD08_RS07245 PF01523 Putative modulator of DNA gyrase AMD08_RS07250 PF09685 AMD08_RS07250 AMD08_RS07255 PF14521 Lysine-specific metallo-endopeptidase AMD08_RS07260 PF00348 Polyprenyl synthetase AMD08_RS07265 PF02609 Exonuclease VII small subunit AMD08_RS07270 PF01171 PP-loop family AMD08_RS07270 PF09179 TilS substrate binding domain AMD08_RS07270 PF11734 TilS substrate C-terminal domain AMD08_RS07275 PF00245 Alkaline phosphatase AMD08_RS07280 PF00375 Sodium:dicarboxylate symporter family AMD08_RS07285 PF13847 Methyltransferase domain AMD08_RS07290 PF03061 Thioesterase superfamily AMD08_RS07295 PF00877 NlpC/P60 family AMD08_RS07300 PF00877 NlpC/P60 family AMD08_RS07305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD08_RS07310 PF04235 AMD08_RS07310 AMD08_RS07315 PF01266 FAD dependent oxidoreductase AMD08_RS07320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD08_RS07320 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS07325 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD08_RS07330 PF01694 Rhomboid family AMD08_RS07335 PF01431 Peptidase family M13 AMD08_RS07335 PF05649 Peptidase family M13 AMD08_RS07340 PF01431 Peptidase family M13 AMD08_RS07340 PF05649 Peptidase family M13 AMD08_RS07345 PF01431 Peptidase family M13 AMD08_RS07345 PF05649 Peptidase family M13 AMD08_RS07350 PF01593 Flavin containing amine oxidoreductase AMD08_RS07355 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS07360 PF00593 TonB dependent receptor AMD08_RS07360 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS07365 PF10609 ParA/MinD ATPase like AMD08_RS07370 PF00692 dUTPase AMD08_RS07385 PF01230 HIT domain AMD08_RS07390 PF01738 Dienelactone hydrolase family AMD08_RS07395 PF00919 Uncharacterized protein family UPF0004 AMD08_RS07395 PF04055 Radical SAM superfamily AMD08_RS07400 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD08_RS07400 PF03449 Transcription elongation factor, N-terminal AMD08_RS07405 PF01694 Rhomboid family AMD08_RS07415 PF00293 NUDIX domain AMD08_RS07420 PF05872 AMD08_RS07420 AMD08_RS07425 PF01464 Transglycosylase SLT domain AMD08_RS07425 PF01476 LysM domain AMD08_RS07430 PF02666 AMD08_RS07430 AMD08_RS07435 PF02630 SCO1/SenC AMD08_RS07440 PF05175 Methyltransferase small domain AMD08_RS07445 PF01264 Chorismate synthase AMD08_RS07450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD08_RS07450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD08_RS07455 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD08_RS07455 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMD08_RS07470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS07475 PF01416 tRNA pseudouridine synthase AMD08_RS07480 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMD08_RS07485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS07485 PF03466 LysR substrate binding domain AMD08_RS07490 PF00291 Pyridoxal-phosphate dependent enzyme AMD08_RS07500 PF00290 Tryptophan synthase alpha chain AMD08_RS07505 PF01039 Carboxyl transferase domain AMD08_RS07510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD08_RS07510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD08_RS07510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD08_RS07510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD08_RS07520 PF03171 2OG-Fe(II) oxygenase superfamily AMD08_RS07520 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AMD08_RS07530 PF00563 EAL domain AMD08_RS07530 PF00672 HAMP domain AMD08_RS07530 PF00990 GGDEF domain AMD08_RS07530 PF14827 Sensory domain of two-component sensor kinase AMD08_RS07535 PF11231 AMD08_RS07535 AMD08_RS07540 PF01152 Bacterial-like globin AMD08_RS07545 PF00106 short chain dehydrogenase AMD08_RS07550 PF00121 Triosephosphate isomerase AMD08_RS07555 PF03840 Preprotein translocase SecG subunit AMD08_RS07565 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMD08_RS07570 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMD08_RS07575 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMD08_RS07580 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMD08_RS07585 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMD08_RS07590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMD08_RS07590 PF10531 SLBB domain AMD08_RS07590 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD08_RS07595 PF00384 Molybdopterin oxidoreductase AMD08_RS07595 PF01568 Molydopterin dinucleotide binding domain AMD08_RS07595 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD08_RS07595 PF13510 2Fe-2S iron-sulfur cluster binding domain AMD08_RS07600 PF00146 NADH dehydrogenase AMD08_RS07605 PF12838 4Fe-4S dicluster domain AMD08_RS07610 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMD08_RS07615 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD08_RS07620 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD08_RS07620 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD08_RS07625 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD08_RS07630 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD08_RS07640 PF02576 Uncharacterised BCR, YhbC family COG0779 AMD08_RS07645 PF00575 S1 RNA binding domain AMD08_RS07645 PF08529 NusA N-terminal domain AMD08_RS07645 PF13184 NusA-like KH domain AMD08_RS07645 PF14520 Helix-hairpin-helix domain AMD08_RS07650 PF00009 Elongation factor Tu GTP binding domain AMD08_RS07650 PF04760 Translation initiation factor IF-2, N-terminal region AMD08_RS07650 PF08364 AMD08_RS07650 AMD08_RS07650 PF11987 Translation-initiation factor 2 AMD08_RS07655 PF02033 Ribosome-binding factor A AMD08_RS07660 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMD08_RS07660 PF09157 Pseudouridine synthase II TruB, C-terminal AMD08_RS07660 PF16198 AMD08_RS07660 AMD08_RS07665 PF00312 Ribosomal protein S15 AMD08_RS07670 PF00013 KH domain AMD08_RS07670 PF00575 S1 RNA binding domain AMD08_RS07670 PF01138 3' exoribonuclease family, domain 1 AMD08_RS07670 PF03725 3' exoribonuclease family, domain 2 AMD08_RS07670 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMD08_RS07675 PF10030 AMD08_RS07675 AMD08_RS07680 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMD08_RS07680 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMD08_RS07685 PF03966 Trm112p-like protein AMD08_RS07690 PF00731 AIR carboxylase AMD08_RS07695 PF02222 ATP-grasp domain AMD08_RS07700 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD08_RS07700 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD08_RS07705 PF00462 Glutaredoxin AMD08_RS07710 PF00106 short chain dehydrogenase AMD08_RS07715 PF01914 AMD08_RS07715 AMD08_RS07720 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS07720 PF13620 Carboxypeptidase regulatory-like domain AMD08_RS07725 PF03641 Possible lysine decarboxylase AMD08_RS07725 PF11892 Domain of unknown function (DUF3412) AMD08_RS07725 PF14793 Domain of unknown function (DUF4478) AMD08_RS07730 PF06580 AMD08_RS07730 AMD08_RS07735 PF12019 Type II transport protein GspH AMD08_RS07735 PF13633 Prokaryotic N-terminal methylation site AMD08_RS07740 PF13544 AMD08_RS07740 AMD08_RS07745 PF13544 AMD08_RS07745 AMD08_RS07745 PF16074 AMD08_RS07745 AMD08_RS07750 PF13681 AMD08_RS07750 AMD08_RS07750 PF14341 AMD08_RS07750 AMD08_RS07755 PF05567 Neisseria PilC beta-propeller domain AMD08_RS07760 PF13633 Prokaryotic N-terminal methylation site AMD08_RS07760 PF16732 AMD08_RS07760 AMD08_RS07770 PF01527 Transposase AMD08_RS07780 PF04717 Phage-related baseplate assembly protein AMD08_RS07785 PF11459 AMD08_RS07785 AMD08_RS07785 PF17194 AMD08_RS07785 AMD08_RS07790 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AMD08_RS07800 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD08_RS07805 PF04002 RadC-like JAB domain AMD08_RS07810 PF05284 AMD08_RS07810 AMD08_RS07815 PF13560 Helix-turn-helix domain AMD08_RS07820 PF01527 Transposase AMD08_RS07830 PF10070 AMD08_RS07830 AMD08_RS07835 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD08_RS07835 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD08_RS07840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS07840 PF03466 LysR substrate binding domain AMD08_RS07855 PF00672 HAMP domain AMD08_RS07855 PF17201 AMD08_RS07855 AMD08_RS07860 PF00072 Response regulator receiver domain AMD08_RS07860 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS07865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS07865 PF07495 Y_Y_Y domain AMD08_RS07865 PF07730 Histidine kinase AMD08_RS07870 PF12833 Helix-turn-helix domain AMD08_RS07875 PF00857 Isochorismatase family AMD08_RS07880 PF07681 AMD08_RS07880 AMD08_RS07885 PF07969 Amidohydrolase family AMD08_RS07895 PF05977 Transmembrane secretion effector AMD08_RS07910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD08_RS07910 PF10414 Sirohaem synthase dimerisation region AMD08_RS07910 PF13241 Putative NAD(P)-binding AMD08_RS07910 PF14824 Sirohaem biosynthesis protein central AMD08_RS07915 PF00072 Response regulator receiver domain AMD08_RS07920 PF10685 AMD08_RS07920 AMD08_RS07925 PF05974 Domain of unknown function (DUF892) AMD08_RS07930 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMD08_RS07935 PF07081 Protein of unknown function (DUF1349) AMD08_RS07940 PF00563 EAL domain AMD08_RS07945 PF12951 AMD08_RS07945 AMD08_RS07945 PF13018 AMD08_RS07945 AMD08_RS07950 PF00072 Response regulator receiver domain AMD08_RS07950 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS07955 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS07955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS07960 PF02321 Outer membrane efflux protein AMD08_RS07965 PF00873 AcrB/AcrD/AcrF family AMD08_RS07970 PF16576 AMD08_RS07970 AMD08_RS07980 PF00082 Subtilase family AMD08_RS07980 PF03797 Autotransporter beta-domain AMD08_RS07980 PF12951 AMD08_RS07980 AMD08_RS07995 PF06580 AMD08_RS07995 AMD08_RS08000 PF00072 Response regulator receiver domain AMD08_RS08000 PF04397 LytTr DNA-binding domain AMD08_RS08005 PF00144 Beta-lactamase AMD08_RS08015 PF07995 Glucose / Sorbosone dehydrogenase AMD08_RS08035 PF09335 AMD08_RS08035 AMD08_RS08045 PF01527 Transposase AMD08_RS08050 PF00665 Integrase core domain AMD08_RS08050 PF13276 AMD08_RS08050 AMD08_RS08060 PF12375 AMD08_RS08060 AMD08_RS08070 PF05707 Zonular occludens toxin (Zot) AMD08_RS08090 PF17091 AMD08_RS08090 AMD08_RS08095 PF02303 Helix-destabilising protein AMD08_RS08100 PF02486 AMD08_RS08100 AMD08_RS08110 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS08115 PF00732 GMC oxidoreductase AMD08_RS08115 PF05199 GMC oxidoreductase AMD08_RS08120 PF12697 Alpha/beta hydrolase family AMD08_RS08120 PF13618 AMD08_RS08120 AMD08_RS08125 PF00535 Glycosyl transferase family 2 AMD08_RS08130 PF05401 Nodulation protein S (NodS) AMD08_RS08135 PF02585 GlcNAc-PI de-N-acetylase AMD08_RS08140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD08_RS08145 PF01596 O-methyltransferase AMD08_RS08150 PF04940 Sensors of blue-light using FAD AMD08_RS08165 PF01106 NifU-like domain AMD08_RS08165 PF01521 Iron-sulphur cluster biosynthesis AMD08_RS08170 PF01329 Pterin 4 alpha carbinolamine dehydratase AMD08_RS08175 PF03544 Gram-negative bacterial TonB protein C-terminal AMD08_RS08180 PF02535 AMD08_RS08180 AMD08_RS08185 PF11737 AMD08_RS08185 AMD08_RS08190 PF00849 RNA pseudouridylate synthase AMD08_RS08190 PF01479 S4 domain AMD08_RS08195 PF00575 S1 RNA binding domain AMD08_RS08195 PF10150 Ribonuclease E/G family AMD08_RS08200 PF00072 Response regulator receiver domain AMD08_RS08200 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS08205 PF00581 Rhodanese-like domain AMD08_RS08215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD08_RS08220 PF03486 HI0933-like protein AMD08_RS08225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD08_RS08225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD08_RS08225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD08_RS08235 PF00589 Phage integrase family AMD08_RS08240 PF01527 Transposase AMD08_RS08245 PF00665 Integrase core domain AMD08_RS08245 PF13276 AMD08_RS08245 AMD08_RS08250 PF01527 Transposase AMD08_RS08255 PF00665 Integrase core domain AMD08_RS08260 PF00501 AMP-binding enzyme AMD08_RS08260 PF00550 Phosphopantetheine attachment site AMD08_RS08260 PF00668 Condensation domain AMD08_RS08260 PF00975 Thioesterase domain AMD08_RS08260 PF13193 AMP-binding enzyme C-terminal domain AMD08_RS08265 PF00501 AMP-binding enzyme AMD08_RS08265 PF00550 Phosphopantetheine attachment site AMD08_RS08265 PF00668 Condensation domain AMD08_RS08265 PF13193 AMP-binding enzyme C-terminal domain AMD08_RS08280 PF05598 AMD08_RS08280 AMD08_RS08295 PF01609 Transposase DDE domain AMD08_RS08305 PF01695 IstB-like ATP binding protein AMD08_RS08310 PF12101 AMD08_RS08310 AMD08_RS08315 PF13091 PLD-like domain AMD08_RS08320 PF09369 AMD08_RS08320 AMD08_RS08325 PF00271 Helicase conserved C-terminal domain AMD08_RS08335 PF00271 Helicase conserved C-terminal domain AMD08_RS08340 PF01695 IstB-like ATP binding protein AMD08_RS08345 PF00665 Integrase core domain AMD08_RS08345 PF13936 Helix-turn-helix domain AMD08_RS08350 PF00176 SNF2 family N-terminal domain AMD08_RS08355 PF00145 C-5 cytosine-specific DNA methylase AMD08_RS08365 PF01695 IstB-like ATP binding protein AMD08_RS08370 PF00665 Integrase core domain AMD08_RS08370 PF13936 Helix-turn-helix domain AMD08_RS08375 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD08_RS08380 PF13614 AAA domain AMD08_RS08390 PF02195 ParB-like nuclease domain AMD08_RS08395 PF11198 AMD08_RS08395 AMD08_RS08405 PF08900 AMD08_RS08405 AMD08_RS08410 PF11358 AMD08_RS08410 AMD08_RS08415 PF00436 Single-strand binding protein family AMD08_RS08420 PF01131 DNA topoisomerase AMD08_RS08420 PF01396 AMD08_RS08420 AMD08_RS08420 PF01751 Toprim domain AMD08_RS08425 PF00145 C-5 cytosine-specific DNA methylase AMD08_RS08455 PF11284 AMD08_RS08455 AMD08_RS08465 PF13936 Helix-turn-helix domain AMD08_RS08470 PF12101 AMD08_RS08470 AMD08_RS08475 PF11679 AMD08_RS08475 AMD08_RS08500 PF00271 Helicase conserved C-terminal domain AMD08_RS08520 PF01464 Transglycosylase SLT domain AMD08_RS08525 PF11072 AMD08_RS08525 AMD08_RS08530 PF12696 TraM recognition site of TraD and TraG AMD08_RS08535 PF14348 AMD08_RS08535 AMD08_RS08540 PF09686 AMD08_RS08540 AMD08_RS08545 PF11660 AMD08_RS08545 AMD08_RS08555 PF11990 AMD08_RS08555 AMD08_RS08560 PF11444 AMD08_RS08560 AMD08_RS08565 PF11920 AMD08_RS08565 AMD08_RS08580 PF11130 AMD08_RS08580 AMD08_RS08585 PF13462 Thioredoxin AMD08_RS08590 PF04002 RadC-like JAB domain AMD08_RS08595 PF07511 AMD08_RS08595 AMD08_RS08600 PF06834 AMD08_RS08600 AMD08_RS08615 PF07916 AMD08_RS08615 AMD08_RS08620 PF12553 AMD08_RS08620 AMD08_RS08625 PF08808 AMD08_RS08625 AMD08_RS08650 PF04610 AMD08_RS08650 AMD08_RS08660 PF05231 AMD08_RS08660 AMD08_RS08675 PF01609 Transposase DDE domain AMD08_RS08675 PF05598 AMD08_RS08675 AMD08_RS08680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS08680 PF03466 LysR substrate binding domain AMD08_RS08685 PF13560 Helix-turn-helix domain AMD08_RS08695 PF01695 IstB-like ATP binding protein AMD08_RS08700 PF00665 Integrase core domain AMD08_RS08700 PF13936 Helix-turn-helix domain AMD08_RS08705 PF13356 Domain of unknown function (DUF4102) AMD08_RS08715 PF01066 CDP-alcohol phosphatidyltransferase AMD08_RS08720 PF01541 GIY-YIG catalytic domain AMD08_RS08720 PF02151 UvrB/uvrC motif AMD08_RS08720 PF08459 UvrC Helix-hairpin-helix N-terminal AMD08_RS08725 PF01436 NHL repeat AMD08_RS08730 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD08_RS08735 PF02348 Cytidylyltransferase AMD08_RS08740 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMD08_RS08745 PF00005 ABC transporter AMD08_RS08745 PF00664 ABC transporter transmembrane region AMD08_RS08750 PF02472 Biopolymer transport protein ExbD/TolR AMD08_RS08755 PF01618 AMD08_RS08755 AMD08_RS08760 PF00753 Metallo-beta-lactamase superfamily AMD08_RS08760 PF03772 AMD08_RS08760 AMD08_RS08760 PF13567 AMD08_RS08760 AMD08_RS08765 PF01370 NAD dependent epimerase/dehydratase family AMD08_RS08770 PF00005 ABC transporter AMD08_RS08775 PF02687 AMD08_RS08775 AMD08_RS08775 PF12704 MacB-like periplasmic core domain AMD08_RS08785 PF03937 Flavinator of succinate dehydrogenase AMD08_RS08790 PF13085 2Fe-2S iron-sulfur cluster binding domain AMD08_RS08790 PF13534 4Fe-4S dicluster domain AMD08_RS08800 PF00890 FAD binding domain AMD08_RS08800 PF02910 Fumarate reductase flavoprotein C-term AMD08_RS08805 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD08_RS08810 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD08_RS08815 PF01571 Aminomethyltransferase folate-binding domain AMD08_RS08815 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD08_RS08820 PF00005 ABC transporter AMD08_RS08820 PF08402 TOBE domain AMD08_RS08825 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD08_RS08825 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD08_RS08830 PF02685 Glucokinase AMD08_RS08835 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMD08_RS08840 PF00920 Dehydratase family AMD08_RS08845 PF01081 KDPG and KHG aldolase AMD08_RS08850 PF00873 AcrB/AcrD/AcrF family AMD08_RS08855 PF00873 AcrB/AcrD/AcrF family AMD08_RS08860 PF00529 HlyD family secretion protein AMD08_RS08860 PF16576 AMD08_RS08860 AMD08_RS08865 PF00034 Cytochrome c AMD08_RS08870 PF00034 Cytochrome c AMD08_RS08910 PF00072 Response regulator receiver domain AMD08_RS08910 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS08910 PF01590 GAF domain AMD08_RS08910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS08910 PF08447 PAS fold AMD08_RS08910 PF08448 PAS fold AMD08_RS08910 PF13185 GAF domain AMD08_RS08915 PF00575 S1 RNA binding domain AMD08_RS08915 PF09371 Tex-like protein N-terminal domain AMD08_RS08915 PF12836 Helix-hairpin-helix motif AMD08_RS08915 PF16921 AMD08_RS08915 AMD08_RS08925 PF01266 FAD dependent oxidoreductase AMD08_RS08935 PF04024 AMD08_RS08935 AMD08_RS08940 PF00561 alpha/beta hydrolase fold AMD08_RS08945 PF09712 AMD08_RS08945 AMD08_RS08950 PF01066 CDP-alcohol phosphatidyltransferase AMD08_RS08955 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS08960 PF00293 NUDIX domain AMD08_RS08965 PF06853 AMD08_RS08965 AMD08_RS08970 PF03618 AMD08_RS08970 AMD08_RS08975 PF00391 PEP-utilising enzyme, mobile domain AMD08_RS08975 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMD08_RS08975 PF02896 PEP-utilising enzyme, TIM barrel domain AMD08_RS08980 PF00924 Mechanosensitive ion channel AMD08_RS08985 PF00929 Exonuclease AMD08_RS08990 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD08_RS08995 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMD08_RS08995 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMD08_RS09000 PF01566 AMD08_RS09000 AMD08_RS09005 PF00561 alpha/beta hydrolase fold AMD08_RS09015 PF12804 MobA-like NTP transferase domain AMD08_RS09020 PF00994 Probable molybdopterin binding domain AMD08_RS09020 PF03453 MoeA N-terminal region (domain I and II) AMD08_RS09020 PF03454 MoeA C-terminal region (domain IV) AMD08_RS09025 PF04193 PQ loop repeat AMD08_RS09030 PF03372 Endonuclease/Exonuclease/phosphatase family AMD08_RS09035 PF06884 AMD08_RS09035 AMD08_RS09040 PF00107 Zinc-binding dehydrogenase AMD08_RS09040 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS09040 PF13823 Alcohol dehydrogenase GroES-associated AMD08_RS09050 PF13628 AMD08_RS09050 AMD08_RS09060 PF00593 TonB dependent receptor AMD08_RS09060 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS09065 PF00581 Rhodanese-like domain AMD08_RS09065 PF00899 ThiF family AMD08_RS09070 PF00994 Probable molybdopterin binding domain AMD08_RS09070 PF03453 MoeA N-terminal region (domain I and II) AMD08_RS09070 PF03454 MoeA C-terminal region (domain IV) AMD08_RS09075 PF01926 50S ribosome-binding GTPase AMD08_RS09075 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMD08_RS09080 PF13360 PQQ-like domain AMD08_RS09085 PF09976 Tetratricopeptide repeat AMD08_RS09090 PF13413 Helix-turn-helix domain AMD08_RS09090 PF13464 AMD08_RS09090 AMD08_RS09095 PF13432 Tetratricopeptide repeat AMD08_RS09100 PF04055 Radical SAM superfamily AMD08_RS09105 PF00334 Nucleoside diphosphate kinase AMD08_RS09110 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS09115 PF00378 Enoyl-CoA hydratase/isomerase family AMD08_RS09115 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD08_RS09115 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD08_RS09120 PF00108 Thiolase, N-terminal domain AMD08_RS09120 PF02803 Thiolase, C-terminal domain AMD08_RS09130 PF02537 AMD08_RS09130 AMD08_RS09135 PF00004 ATPase family associated with various cellular activities (AAA) AMD08_RS09135 PF12002 MgsA AAA+ ATPase C terminal AMD08_RS09135 PF16193 AMD08_RS09135 AMD08_RS09145 PF03548 Outer membrane lipoprotein carrier protein LolA AMD08_RS09155 PF01580 FtsK/SpoIIIE family AMD08_RS09155 PF09397 Ftsk gamma domain AMD08_RS09155 PF13491 AMD08_RS09155 AMD08_RS09160 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS09165 PF04339 AMD08_RS09165 AMD08_RS09170 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMD08_RS09175 PF01176 Translation initiation factor 1A / IF-1 AMD08_RS09180 PF00004 ATPase family associated with various cellular activities (AAA) AMD08_RS09180 PF02861 Clp amino terminal domain AMD08_RS09180 PF07724 AAA domain (Cdc48 subfamily) AMD08_RS09180 PF10431 C-terminal, D2-small domain, of ClpB protein AMD08_RS09185 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMD08_RS09190 PF00293 NUDIX domain AMD08_RS09195 PF03054 tRNA methyl transferase AMD08_RS09200 PF04356 Protein of unknown function (DUF489) AMD08_RS09205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS09215 PF00563 EAL domain AMD08_RS09215 PF00990 GGDEF domain AMD08_RS09215 PF08447 PAS fold AMD08_RS09215 PF13426 PAS domain AMD08_RS09220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS09220 PF07730 Histidine kinase AMD08_RS09220 PF08448 PAS fold AMD08_RS09220 PF13426 PAS domain AMD08_RS09225 PF00072 Response regulator receiver domain AMD08_RS09225 PF00563 EAL domain AMD08_RS09225 PF00990 GGDEF domain AMD08_RS09230 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS09230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS09240 PF04316 Anti-sigma-28 factor, FlgM AMD08_RS09245 PF13144 SAF-like AMD08_RS09250 PF00072 Response regulator receiver domain AMD08_RS09250 PF01584 CheW-like domain AMD08_RS09255 PF00460 Flagella basal body rod protein AMD08_RS09260 PF00460 Flagella basal body rod protein AMD08_RS09260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD08_RS09265 PF03963 AMD08_RS09265 AMD08_RS09265 PF13860 FlgD Ig-like domain AMD08_RS09265 PF13861 FlgD Tudor-like domain AMD08_RS09270 PF00460 Flagella basal body rod protein AMD08_RS09270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD08_RS09270 PF07559 Flagellar basal body protein FlaE AMD08_RS09275 PF00460 Flagella basal body rod protein AMD08_RS09275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD08_RS09280 PF00460 Flagella basal body rod protein AMD08_RS09280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD08_RS09285 PF02107 AMD08_RS09285 AMD08_RS09290 PF02119 AMD08_RS09290 AMD08_RS09295 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD08_RS09295 PF10135 AMD08_RS09295 AMD08_RS09300 PF00460 Flagella basal body rod protein AMD08_RS09300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD08_RS09305 PF00669 Bacterial flagellin N-terminal helical region AMD08_RS09305 PF00700 Bacterial flagellin C-terminal helical region AMD08_RS09310 PF00669 Bacterial flagellin N-terminal helical region AMD08_RS09310 PF00700 Bacterial flagellin C-terminal helical region AMD08_RS09310 PF07196 Flagellin hook IN motif AMD08_RS09315 PF02465 AMD08_RS09315 AMD08_RS09315 PF07195 AMD08_RS09315 AMD08_RS09315 PF07196 Flagellin hook IN motif AMD08_RS09320 PF02561 Flagellar protein FliS AMD08_RS09330 PF16823 AMD08_RS09330 AMD08_RS09335 PF00072 Response regulator receiver domain AMD08_RS09335 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS09340 PF00309 AMD08_RS09340 AMD08_RS09340 PF04552 Sigma-54, DNA binding domain AMD08_RS09340 PF04963 Sigma-54 factor, core binding domain AMD08_RS09345 PF00072 Response regulator receiver domain AMD08_RS09350 PF00158 Sigma-54 interaction domain AMD08_RS09350 PF02954 Bacterial regulatory protein, Fis family AMD08_RS09350 PF06490 AMD08_RS09350 AMD08_RS09355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD08_RS09365 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD08_RS09365 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD08_RS09370 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS09375 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS09380 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS09380 PF14602 Hexapeptide repeat of succinyl-transferase AMD08_RS09385 PF00355 Rieske [2Fe-2S] domain AMD08_RS09385 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMD08_RS09390 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS09395 PF05050 Methyltransferase FkbM domain AMD08_RS09400 PF00535 Glycosyl transferase family 2 AMD08_RS09405 PF02049 AMD08_RS09405 AMD08_RS09410 PF01514 Secretory protein of YscJ/FliF family AMD08_RS09410 PF08345 AMD08_RS09410 AMD08_RS09415 PF01706 FliG C-terminal domain AMD08_RS09415 PF14841 FliG middle domain AMD08_RS09415 PF14842 FliG N-terminal domain AMD08_RS09420 PF02108 AMD08_RS09420 AMD08_RS09425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD08_RS09430 PF02050 Flagellar FliJ protein AMD08_RS09435 PF02120 Flagellar hook-length control protein FliK AMD08_RS09440 PF03748 AMD08_RS09440 AMD08_RS09445 PF01052 Surface presentation of antigens (SPOA) AMD08_RS09445 PF02154 Flagellar motor switch protein FliM AMD08_RS09450 PF01052 Surface presentation of antigens (SPOA) AMD08_RS09455 PF04347 AMD08_RS09455 AMD08_RS09460 PF00813 AMD08_RS09460 AMD08_RS09470 PF01313 AMD08_RS09470 AMD08_RS09475 PF01311 AMD08_RS09475 AMD08_RS09480 PF00990 GGDEF domain AMD08_RS09480 PF07494 Two component regulator propeller AMD08_RS09480 PF07495 Y_Y_Y domain AMD08_RS09485 PF07495 Y_Y_Y domain AMD08_RS09490 PF00990 GGDEF domain AMD08_RS09495 PF00563 EAL domain AMD08_RS09495 PF00990 GGDEF domain AMD08_RS09495 PF03707 AMD08_RS09495 AMD08_RS09500 PF01312 FlhB HrpN YscU SpaS Family AMD08_RS09505 PF00771 FHIPEP family AMD08_RS09510 PF00448 SRP54-type protein, GTPase domain AMD08_RS09515 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD08_RS09520 PF04539 Sigma-70 region 3 AMD08_RS09520 PF04542 Sigma-70 region 2 AMD08_RS09520 PF04545 Sigma-70, region 4 AMD08_RS09525 PF00072 Response regulator receiver domain AMD08_RS09530 PF04344 Chemotaxis phosphatase, CheZ AMD08_RS09535 PF01584 CheW-like domain AMD08_RS09535 PF01627 Hpt domain AMD08_RS09535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS09535 PF02895 Signal transducing histidine kinase, homodimeric domain AMD08_RS09545 PF04055 Radical SAM superfamily AMD08_RS09545 PF13353 4Fe-4S single cluster domain AMD08_RS09555 PF01381 Helix-turn-helix AMD08_RS09560 PF13683 AMD08_RS09560 AMD08_RS09565 PF01527 Transposase AMD08_RS09570 PF00665 Integrase core domain AMD08_RS09570 PF13276 AMD08_RS09570 AMD08_RS09585 PF00665 Integrase core domain AMD08_RS09585 PF13936 Helix-turn-helix domain AMD08_RS09590 PF01695 IstB-like ATP binding protein AMD08_RS09615 PF00580 UvrD/REP helicase N-terminal domain AMD08_RS09615 PF13361 UvrD-like helicase C-terminal domain AMD08_RS09640 PF09686 AMD08_RS09640 AMD08_RS09645 PF11660 AMD08_RS09645 AMD08_RS09650 PF11190 AMD08_RS09650 AMD08_RS09655 PF11990 AMD08_RS09655 AMD08_RS09660 PF11444 AMD08_RS09660 AMD08_RS09665 PF11920 AMD08_RS09665 AMD08_RS09680 PF11130 AMD08_RS09680 AMD08_RS09685 PF13462 Thioredoxin AMD08_RS09690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS09690 PF03466 LysR substrate binding domain AMD08_RS09695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD08_RS09695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD08_RS09700 PF03401 Tripartite tricarboxylate transporter family receptor AMD08_RS09705 PF06684 Amino acid synthesis AMD08_RS09715 PF04002 RadC-like JAB domain AMD08_RS09720 PF07511 AMD08_RS09720 AMD08_RS09725 PF06834 AMD08_RS09725 AMD08_RS09735 PF01507 Phosphoadenosine phosphosulfate reductase family AMD08_RS09745 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD08_RS09750 PF00589 Phage integrase family AMD08_RS09750 PF13356 Domain of unknown function (DUF4102) AMD08_RS09750 PF14659 Phage integrase, N-terminal SAM-like domain AMD08_RS09755 PF00117 Glutamine amidotransferase class-I AMD08_RS09755 PF00958 GMP synthase C terminal domain AMD08_RS09755 PF02540 NAD synthase AMD08_RS09760 PF00478 IMP dehydrogenase / GMP reductase domain AMD08_RS09760 PF00571 CBS domain AMD08_RS09765 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMD08_RS09765 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMD08_RS09770 PF06844 Protein of unknown function (DUF1244) AMD08_RS09775 PF00999 Sodium/hydrogen exchanger family AMD08_RS09775 PF02254 TrkA-N domain AMD08_RS09780 PF00483 Nucleotidyl transferase AMD08_RS09785 PF02719 Polysaccharide biosynthesis protein AMD08_RS09785 PF13727 CoA-binding domain AMD08_RS09790 PF00953 Glycosyl transferase family 4 AMD08_RS09795 PF13432 Tetratricopeptide repeat AMD08_RS09800 PF06305 AMD08_RS09800 AMD08_RS09805 PF00216 Bacterial DNA-binding protein AMD08_RS09810 PF00575 S1 RNA binding domain AMD08_RS09815 PF02224 Cytidylate kinase AMD08_RS09820 PF00444 Ribosomal protein L36 AMD08_RS09830 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMD08_RS09835 PF00795 Carbon-nitrogen hydrolase AMD08_RS09840 PF13420 Acetyltransferase (GNAT) domain AMD08_RS09845 PF01963 AMD08_RS09845 AMD08_RS09850 PF03372 Endonuclease/Exonuclease/phosphatase family AMD08_RS09855 PF00754 F5/8 type C domain AMD08_RS09855 PF06202 Amylo-alpha-1,6-glucosidase AMD08_RS09860 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS09865 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS09870 PF13416 Bacterial extracellular solute-binding protein AMD08_RS09875 PF10091 Putative glucoamylase AMD08_RS09880 PF13620 Carboxypeptidase regulatory-like domain AMD08_RS09885 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS09885 PF13377 Periplasmic binding protein-like domain AMD08_RS09890 PF01722 BolA-like protein AMD08_RS09895 PF03795 YCII-related domain AMD08_RS09900 PF02616 ScpA/B protein AMD08_RS09905 PF04079 Putative transcriptional regulators (Ypuh-like) AMD08_RS09910 PF00849 RNA pseudouridylate synthase AMD08_RS09910 PF01479 S4 domain AMD08_RS09920 PF05096 Glutamine cyclotransferase AMD08_RS09925 PF00795 Carbon-nitrogen hydrolase AMD08_RS09930 PF00155 Aminotransferase class I and II AMD08_RS09935 PF00005 ABC transporter AMD08_RS09940 PF03379 AMD08_RS09940 AMD08_RS09945 PF01578 AMD08_RS09945 AMD08_RS09950 PF04995 AMD08_RS09950 AMD08_RS09955 PF03100 CcmE AMD08_RS09960 PF01578 AMD08_RS09960 AMD08_RS09960 PF16327 AMD08_RS09960 AMD08_RS09965 PF08534 Redoxin AMD08_RS09970 PF03918 Cytochrome C biogenesis protein AMD08_RS09975 PF13432 Tetratricopeptide repeat AMD08_RS09980 PF00561 alpha/beta hydrolase fold AMD08_RS09985 PF00313 'Cold-shock' DNA-binding domain AMD08_RS09985 PF06961 AMD08_RS09985 AMD08_RS09990 PF00005 ABC transporter AMD08_RS09990 PF00664 ABC transporter transmembrane region AMD08_RS09995 PF00005 ABC transporter AMD08_RS09995 PF00664 ABC transporter transmembrane region AMD08_RS10000 PF01654 AMD08_RS10000 AMD08_RS10005 PF02322 AMD08_RS10005 AMD08_RS10010 PF08173 AMD08_RS10010 AMD08_RS10020 PF07690 Major Facilitator Superfamily AMD08_RS10025 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD08_RS10025 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD08_RS10030 PF00171 Aldehyde dehydrogenase family AMD08_RS10035 PF00696 Amino acid kinase family AMD08_RS10035 PF01472 PUA domain AMD08_RS10040 PF03795 YCII-related domain AMD08_RS10045 PF00206 Lyase AMD08_RS10050 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD08_RS10055 PF13302 Acetyltransferase (GNAT) domain AMD08_RS10060 PF00696 Amino acid kinase family AMD08_RS10060 PF04768 Protein of unknown function (DUF619) AMD08_RS10065 PF01546 Peptidase family M20/M25/M40 AMD08_RS10065 PF07687 Peptidase dimerisation domain AMD08_RS10070 PF00583 Acetyltransferase (GNAT) family AMD08_RS10075 PF00764 Arginosuccinate synthase AMD08_RS10080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD08_RS10080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD08_RS10090 PF01406 tRNA synthetases class I (C) catalytic domain AMD08_RS10090 PF09190 DALR domain AMD08_RS10095 PF02657 Fe-S metabolism associated domain AMD08_RS10100 PF05977 Transmembrane secretion effector AMD08_RS10105 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD08_RS10115 PF01809 AMD08_RS10115 AMD08_RS10120 PF01979 Amidohydrolase family AMD08_RS10125 PF01551 Peptidase family M23 AMD08_RS10130 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS10135 PF13520 Amino acid permease AMD08_RS10140 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMD08_RS10145 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AMD08_RS10155 PF00753 Metallo-beta-lactamase superfamily AMD08_RS10160 PF16242 AMD08_RS10160 AMD08_RS10175 PF01527 Transposase AMD08_RS10180 PF00295 Glycosyl hydrolases family 28 AMD08_RS10190 PF13419 Haloacid dehalogenase-like hydrolase AMD08_RS10195 PF13489 Methyltransferase domain AMD08_RS10200 PF01979 Amidohydrolase family AMD08_RS10210 PF01132 Elongation factor P (EF-P) OB domain AMD08_RS10210 PF08207 Elongation factor P (EF-P) KOW-like domain AMD08_RS10210 PF09285 Elongation factor P, C-terminal AMD08_RS10215 PF13353 4Fe-4S single cluster domain AMD08_RS10220 PF00563 EAL domain AMD08_RS10220 PF00672 HAMP domain AMD08_RS10220 PF00990 GGDEF domain AMD08_RS10220 PF17203 AMD08_RS10220 AMD08_RS10225 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AMD08_RS10230 PF00588 SpoU rRNA Methylase family AMD08_RS10235 PF00459 Inositol monophosphatase family AMD08_RS10240 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD08_RS10240 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD08_RS10245 PF00545 ribonuclease AMD08_RS10250 PF01337 Barstar (barnase inhibitor) AMD08_RS10255 PF00005 ABC transporter AMD08_RS10255 PF12848 ABC transporter AMD08_RS10255 PF16326 AMD08_RS10255 AMD08_RS10260 PF00270 DEAD/DEAH box helicase AMD08_RS10260 PF00271 Helicase conserved C-terminal domain AMD08_RS10260 PF03880 DbpA RNA binding domain AMD08_RS10265 PF00156 Phosphoribosyl transferase domain AMD08_RS10270 PF02696 AMD08_RS10270 AMD08_RS10275 PF07859 alpha/beta hydrolase fold AMD08_RS10280 PF00043 Glutathione S-transferase, C-terminal domain AMD08_RS10280 PF02798 Glutathione S-transferase, N-terminal domain AMD08_RS10285 PF00313 'Cold-shock' DNA-binding domain AMD08_RS10290 PF07152 YaeQ protein AMD08_RS10295 PF03486 HI0933-like protein AMD08_RS10300 PF00563 EAL domain AMD08_RS10300 PF00990 GGDEF domain AMD08_RS10300 PF13188 PAS domain AMD08_RS10305 PF01435 Peptidase family M48 AMD08_RS10310 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD08_RS10315 PF00106 short chain dehydrogenase AMD08_RS10320 PF05233 AMD08_RS10320 AMD08_RS10320 PF07879 AMD08_RS10320 AMD08_RS10325 PF01963 AMD08_RS10325 AMD08_RS10330 PF07920 Protein of unknown function (DUF1684) AMD08_RS10335 PF01119 DNA mismatch repair protein, C-terminal domain AMD08_RS10335 PF08676 MutL C terminal dimerisation domain AMD08_RS10335 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS10340 PF01520 N-acetylmuramoyl-L-alanine amidase AMD08_RS10340 PF11741 AMIN domain AMD08_RS10345 PF02367 Uncharacterised P-loop hydrolase UPF0079 AMD08_RS10350 PF01256 Carbohydrate kinase AMD08_RS10350 PF03853 YjeF-related protein N-terminus AMD08_RS10355 PF08331 AMD08_RS10355 AMD08_RS10355 PF13484 AMD08_RS10355 AMD08_RS10360 PF02601 AMD08_RS10360 AMD08_RS10360 PF13742 AMD08_RS10360 AMD08_RS10365 PF06057 Bacterial virulence protein (VirJ) AMD08_RS10370 PF03781 Sulfatase-modifying factor enzyme 1 AMD08_RS10375 PF00570 HRDC domain AMD08_RS10375 PF01612 3'-5' exonuclease AMD08_RS10380 PF01068 ATP dependent DNA ligase domain AMD08_RS10380 PF04679 ATP dependent DNA ligase C terminal region AMD08_RS10380 PF13298 DNA polymerase Ligase (LigD) AMD08_RS10385 PF12244 AMD08_RS10385 AMD08_RS10390 PF00816 H-NS histone family AMD08_RS10400 PF00589 Phage integrase family AMD08_RS10425 PF01609 Transposase DDE domain AMD08_RS10425 PF05598 AMD08_RS10425 AMD08_RS10430 PF00665 Integrase core domain AMD08_RS10435 PF01527 Transposase AMD08_RS10450 PF05016 Plasmid stabilisation system protein AMD08_RS10455 PF01402 Ribbon-helix-helix protein, copG family AMD08_RS10460 PF01526 AMD08_RS10460 AMD08_RS10470 PF00665 Integrase core domain AMD08_RS10470 PF13276 AMD08_RS10470 AMD08_RS10475 PF00239 Resolvase, N terminal domain AMD08_RS10480 PF13166 AMD08_RS10480 AMD08_RS10490 PF02384 N-6 DNA Methylase AMD08_RS10495 PF09572 AMD08_RS10495 AMD08_RS10505 PF07929 Plasmid pRiA4b ORF-3-like protein AMD08_RS10520 PF04796 AMD08_RS10520 AMD08_RS10530 PF13289 AMD08_RS10530 AMD08_RS10535 PF01935 Domain of unknown function DUF87 AMD08_RS10545 PF00990 GGDEF domain AMD08_RS10550 PF01584 CheW-like domain AMD08_RS10555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS10555 PF00672 HAMP domain AMD08_RS10555 PF12729 AMD08_RS10555 AMD08_RS10560 PF02245 Methylpurine-DNA glycosylase (MPG) AMD08_RS10565 PF00270 DEAD/DEAH box helicase AMD08_RS10565 PF00271 Helicase conserved C-terminal domain AMD08_RS10565 PF08494 AMD08_RS10565 AMD08_RS10570 PF11743 AMD08_RS10570 AMD08_RS10580 PF04386 Stringent starvation protein B AMD08_RS10585 PF00043 Glutathione S-transferase, C-terminal domain AMD08_RS10585 PF13417 Glutathione S-transferase, N-terminal domain AMD08_RS10590 PF02167 Cytochrome C1 family AMD08_RS10595 PF00032 Cytochrome b(C-terminal)/b6/petD AMD08_RS10595 PF00033 Cytochrome b(N-terminal)/b6/petB AMD08_RS10600 PF00355 Rieske [2Fe-2S] domain AMD08_RS10600 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMD08_RS10605 PF01464 Transglycosylase SLT domain AMD08_RS10610 PF08279 HTH domain AMD08_RS10610 PF13280 AMD08_RS10610 AMD08_RS10615 PF02798 Glutathione S-transferase, N-terminal domain AMD08_RS10620 PF00919 Uncharacterized protein family UPF0004 AMD08_RS10620 PF01938 TRAM domain AMD08_RS10620 PF04055 Radical SAM superfamily AMD08_RS10625 PF02562 PhoH-like protein AMD08_RS10635 PF02130 Uncharacterized protein family UPF0054 AMD08_RS10645 PF00571 CBS domain AMD08_RS10645 PF03471 Transporter associated domain AMD08_RS10650 PF13387 AMD08_RS10650 AMD08_RS10655 PF01544 CorA-like Mg2+ transporter protein AMD08_RS10660 PF00171 Aldehyde dehydrogenase family AMD08_RS10670 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS10675 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS10680 PF00005 ABC transporter AMD08_RS10680 PF08402 TOBE domain AMD08_RS10685 PF02321 Outer membrane efflux protein AMD08_RS10690 PF07690 Major Facilitator Superfamily AMD08_RS10695 PF13533 Biotin-lipoyl like AMD08_RS10695 PF16576 AMD08_RS10695 AMD08_RS10700 PF13416 Bacterial extracellular solute-binding protein AMD08_RS10705 PF00202 Aminotransferase class-III AMD08_RS10710 PF00120 Glutamine synthetase, catalytic domain AMD08_RS10715 PF07722 Peptidase C26 AMD08_RS10720 PF00120 Glutamine synthetase, catalytic domain AMD08_RS10725 PF01266 FAD dependent oxidoreductase AMD08_RS10730 PF00072 Response regulator receiver domain AMD08_RS10730 PF00990 GGDEF domain AMD08_RS10735 PF01814 Hemerythrin HHE cation binding domain AMD08_RS10740 PF00083 Sugar (and other) transporter AMD08_RS10740 PF07690 Major Facilitator Superfamily AMD08_RS10750 PF00384 Molybdopterin oxidoreductase AMD08_RS10750 PF01568 Molydopterin dinucleotide binding domain AMD08_RS10755 PF02634 FdhD/NarQ family AMD08_RS10760 PF07690 Major Facilitator Superfamily AMD08_RS10770 PF00202 Aminotransferase class-III AMD08_RS10780 PF04286 AMD08_RS10780 AMD08_RS10785 PF00072 Response regulator receiver domain AMD08_RS10785 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS10785 PF01627 Hpt domain AMD08_RS10785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS10785 PF03924 CHASE domain AMD08_RS10785 PF13426 PAS domain AMD08_RS10790 PF00072 Response regulator receiver domain AMD08_RS10790 PF13487 HD domain AMD08_RS10795 PF07690 Major Facilitator Superfamily AMD08_RS10800 PF05088 AMD08_RS10800 AMD08_RS10800 PF12466 AMD08_RS10800 AMD08_RS10805 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS10810 PF16576 AMD08_RS10810 AMD08_RS10815 PF00873 AcrB/AcrD/AcrF family AMD08_RS10820 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS10820 PF13377 Periplasmic binding protein-like domain AMD08_RS10825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD08_RS10825 PF00381 PTS HPr component phosphorylation site AMD08_RS10825 PF00391 PEP-utilising enzyme, mobile domain AMD08_RS10825 PF02896 PEP-utilising enzyme, TIM barrel domain AMD08_RS10825 PF05524 PEP-utilising enzyme, N-terminal AMD08_RS10830 PF00294 pfkB family carbohydrate kinase AMD08_RS10835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD08_RS10840 PF04966 Carbohydrate-selective porin, OprB family AMD08_RS10855 PF07791 AMD08_RS10855 AMD08_RS10870 PF02355 Protein export membrane protein AMD08_RS10870 PF07549 SecD/SecF GG Motif AMD08_RS10875 PF02355 Protein export membrane protein AMD08_RS10875 PF07549 SecD/SecF GG Motif AMD08_RS10875 PF13721 SecD export protein N-terminal TM region AMD08_RS10880 PF02699 Preprotein translocase subunit AMD08_RS10885 PF01702 Queuine tRNA-ribosyltransferase AMD08_RS10890 PF02547 Queuosine biosynthesis protein AMD08_RS10895 PF01037 AsnC family AMD08_RS10895 PF13412 Winged helix-turn-helix DNA-binding AMD08_RS10905 PF00202 Aminotransferase class-III AMD08_RS10910 PF04488 Glycosyltransferase sugar-binding region containing DXD motif AMD08_RS10915 PF00149 Calcineurin-like phosphoesterase AMD08_RS10915 PF16656 AMD08_RS10915 AMD08_RS10920 PF02333 Phytase AMD08_RS10925 PF00593 TonB dependent receptor AMD08_RS10925 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS10930 PF14681 Uracil phosphoribosyltransferase AMD08_RS10935 PF00759 Glycosyl hydrolase family 9 AMD08_RS10935 PF02927 N-terminal ig-like domain of cellulase AMD08_RS10945 PF01019 Gamma-glutamyltranspeptidase AMD08_RS10950 PF00037 4Fe-4S binding domain AMD08_RS10965 PF01467 Cytidylyltransferase AMD08_RS10970 PF03602 Conserved hypothetical protein 95 AMD08_RS10975 PF00183 Hsp90 protein AMD08_RS10975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS10980 PF05593 AMD08_RS10980 AMD08_RS10980 PF14220 AMD08_RS10980 AMD08_RS10985 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) AMD08_RS10990 PF00593 TonB dependent receptor AMD08_RS10990 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS10995 PF00326 Prolyl oligopeptidase family AMD08_RS10995 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD08_RS11000 PF04616 Glycosyl hydrolases family 43 AMD08_RS11005 PF00754 F5/8 type C domain AMD08_RS11005 PF07532 AMD08_RS11005 AMD08_RS11010 PF00593 TonB dependent receptor AMD08_RS11010 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS11020 PF00082 Subtilase family AMD08_RS11020 PF09286 Pro-kumamolisin, activation domain AMD08_RS11035 PF01301 Glycosyl hydrolases family 35 AMD08_RS11040 PF00326 Prolyl oligopeptidase family AMD08_RS11040 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD08_RS11045 PF13520 Amino acid permease AMD08_RS11050 PF05960 Bacterial protein of unknown function (DUF885) AMD08_RS11055 PF05960 Bacterial protein of unknown function (DUF885) AMD08_RS11060 PF00557 Metallopeptidase family M24 AMD08_RS11060 PF01321 Creatinase/Prolidase N-terminal domain AMD08_RS11065 PF00171 Aldehyde dehydrogenase family AMD08_RS11070 PF00701 Dihydrodipicolinate synthetase family AMD08_RS11075 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS11080 PF13510 2Fe-2S iron-sulfur cluster binding domain AMD08_RS11085 PF01266 FAD dependent oxidoreductase AMD08_RS11090 PF05544 Proline racemase AMD08_RS11095 PF08448 PAS fold AMD08_RS11095 PF12833 Helix-turn-helix domain AMD08_RS11100 PF00448 SRP54-type protein, GTPase domain AMD08_RS11100 PF02881 SRP54-type protein, helical bundle domain AMD08_RS11105 PF00633 Helix-hairpin-helix motif AMD08_RS11105 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD08_RS11105 PF14815 NUDIX domain AMD08_RS11110 PF04362 Bacterial Fe(2+) trafficking AMD08_RS11115 PF00072 Response regulator receiver domain AMD08_RS11115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS11115 PF13426 PAS domain AMD08_RS11125 PF10685 AMD08_RS11125 AMD08_RS11145 PF08212 Lipocalin-like domain AMD08_RS11150 PF03168 Late embryogenesis abundant protein AMD08_RS11155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD08_RS11155 PF02770 Acyl-CoA dehydrogenase, middle domain AMD08_RS11155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD08_RS11155 PF12418 AMD08_RS11155 AMD08_RS11155 PF12806 AMD08_RS11155 AMD08_RS11160 PF14279 AMD08_RS11160 AMD08_RS11165 PF02779 Transketolase, pyrimidine binding domain AMD08_RS11165 PF02780 Transketolase, C-terminal domain AMD08_RS11165 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMD08_RS11170 PF04101 Glycosyltransferase family 28 C-terminal domain AMD08_RS11180 PF13506 Glycosyl transferase family 21 AMD08_RS11185 PF01370 NAD dependent epimerase/dehydratase family AMD08_RS11190 PF00753 Metallo-beta-lactamase superfamily AMD08_RS11195 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD08_RS11195 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD08_RS11200 PF01963 AMD08_RS11200 AMD08_RS11205 PF06172 Cupin superfamily (DUF985) AMD08_RS11210 PF03808 AMD08_RS11210 AMD08_RS11215 PF04230 AMD08_RS11215 AMD08_RS11225 PF13440 AMD08_RS11225 AMD08_RS11230 PF13692 Glycosyl transferases group 1 AMD08_RS11235 PF00534 Glycosyl transferases group 1 AMD08_RS11235 PF13439 Glycosyltransferase Family 4 AMD08_RS11240 PF01757 AMD08_RS11240 AMD08_RS11245 PF01757 AMD08_RS11245 AMD08_RS11255 PF02397 AMD08_RS11255 AMD08_RS11255 PF13727 CoA-binding domain AMD08_RS11260 PF02706 Chain length determinant protein AMD08_RS11260 PF13807 AMD08_RS11260 AMD08_RS11265 PF02563 Polysaccharide biosynthesis/export protein AMD08_RS11265 PF10531 SLBB domain AMD08_RS11275 PF13411 MerR HTH family regulatory protein AMD08_RS11280 PF00216 Bacterial DNA-binding protein AMD08_RS11285 PF01588 Putative tRNA binding domain AMD08_RS11285 PF03147 Ferredoxin-fold anticodon binding domain AMD08_RS11285 PF03483 B3/4 domain AMD08_RS11285 PF03484 tRNA synthetase B5 domain AMD08_RS11290 PF01409 tRNA synthetases class II core domain (F) AMD08_RS11290 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMD08_RS11295 PF00453 Ribosomal protein L20 AMD08_RS11300 PF01632 Ribosomal protein L35 AMD08_RS11305 PF00707 Translation initiation factor IF-3, C-terminal domain AMD08_RS11305 PF05198 Translation initiation factor IF-3, N-terminal domain AMD08_RS11310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD08_RS11310 PF02824 TGS domain AMD08_RS11310 PF03129 Anticodon binding domain AMD08_RS11310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD08_RS11315 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS11315 PF13377 Periplasmic binding protein-like domain AMD08_RS11320 PF00128 Alpha amylase, catalytic domain AMD08_RS11325 PF07690 Major Facilitator Superfamily AMD08_RS11330 PF06202 Amylo-alpha-1,6-glucosidase AMD08_RS11335 PF10566 Glycoside hydrolase 97 AMD08_RS11335 PF14508 Glycosyl-hydrolase 97 N-terminal AMD08_RS11335 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD08_RS11345 PF00593 TonB dependent receptor AMD08_RS11345 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS11350 PF00128 Alpha amylase, catalytic domain AMD08_RS11355 PF01527 Transposase AMD08_RS11360 PF13683 AMD08_RS11360 AMD08_RS11365 PF05231 AMD08_RS11365 AMD08_RS11370 PF00083 Sugar (and other) transporter AMD08_RS11380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD08_RS11380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD08_RS11385 PF14498 Glycosyl hydrolase family 65, N-terminal domain AMD08_RS11390 PF01055 Glycosyl hydrolases family 31 AMD08_RS11390 PF07691 PA14 domain AMD08_RS11390 PF16338 AMD08_RS11390 AMD08_RS11390 PF17137 AMD08_RS11390 AMD08_RS11395 PF02449 Beta-galactosidase AMD08_RS11400 PF03629 Domain of unknown function (DUF303) AMD08_RS11400 PF13364 Beta-galactosidase jelly roll domain AMD08_RS11410 PF00593 TonB dependent receptor AMD08_RS11410 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS11415 PF00593 TonB dependent receptor AMD08_RS11415 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS11420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS11420 PF03466 LysR substrate binding domain AMD08_RS11430 PF01081 KDPG and KHG aldolase AMD08_RS11435 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD08_RS11435 PF13378 Enolase C-terminal domain-like AMD08_RS11440 PF08450 SMP-30/Gluconolaconase/LRE-like region AMD08_RS11445 PF05035 2-keto-3-deoxy-galactonokinase AMD08_RS11450 PF00037 4Fe-4S binding domain AMD08_RS11450 PF11953 Domain of unknown function (DUF3470) AMD08_RS11460 PF00701 Dihydrodipicolinate synthetase family AMD08_RS11465 PF13740 ACT domain AMD08_RS11470 PF06877 Regulator of ribonuclease activity B AMD08_RS11475 PF00578 AhpC/TSA family AMD08_RS11480 PF02562 PhoH-like protein AMD08_RS11480 PF13638 PIN domain AMD08_RS11490 PF06912 AMD08_RS11490 AMD08_RS11495 PF08543 Phosphomethylpyrimidine kinase AMD08_RS11500 PF12146 Putative lysophospholipase AMD08_RS11515 PF00581 Rhodanese-like domain AMD08_RS11515 PF09335 AMD08_RS11515 AMD08_RS11520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS11520 PF03466 LysR substrate binding domain AMD08_RS11530 PF02678 Pirin AMD08_RS11535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS11535 PF08447 PAS fold AMD08_RS11535 PF08448 PAS fold AMD08_RS11545 PF02599 Global regulator protein family AMD08_RS11550 PF01411 tRNA synthetases class II (A) AMD08_RS11550 PF02272 DHHA1 domain AMD08_RS11550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD08_RS11555 PF02631 RecX family AMD08_RS11560 PF00154 recA bacterial DNA recombination protein AMD08_RS11565 PF00717 Peptidase S24-like AMD08_RS11565 PF01726 LexA DNA binding domain AMD08_RS11570 PF03109 AMD08_RS11570 AMD08_RS11575 PF02464 Competence-damaged protein AMD08_RS11580 PF01926 50S ribosome-binding GTPase AMD08_RS11580 PF13167 AMD08_RS11580 AMD08_RS11580 PF16360 AMD08_RS11580 AMD08_RS11590 PF01715 IPP transferase AMD08_RS11595 PF00809 Pterin binding enzyme AMD08_RS11600 PF00004 ATPase family associated with various cellular activities (AAA) AMD08_RS11600 PF01434 Peptidase family M41 AMD08_RS11600 PF06480 FtsH Extracellular AMD08_RS11605 PF01728 FtsJ-like methyltransferase AMD08_RS11610 PF01985 CRS1 / YhbY (CRM) domain AMD08_RS11615 PF04430 Protein of unknown function (DUF498/DUF598) AMD08_RS11620 PF01476 LysM domain AMD08_RS11620 PF01551 Peptidase family M23 AMD08_RS11630 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMD08_RS11635 PF01975 Survival protein SurE AMD08_RS11640 PF01713 Smr domain AMD08_RS11645 PF01142 tRNA pseudouridine synthase D (TruD) AMD08_RS11650 PF02542 YgbB family AMD08_RS11655 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMD08_RS11660 PF04977 Septum formation initiator AMD08_RS11665 PF00113 Enolase, C-terminal TIM barrel domain AMD08_RS11665 PF03952 Enolase, N-terminal domain AMD08_RS11675 PF00793 DAHP synthetase I family AMD08_RS11680 PF00117 Glutamine amidotransferase class-I AMD08_RS11680 PF06418 CTP synthase N-terminus AMD08_RS11690 PF00204 DNA gyrase B AMD08_RS11690 PF00986 DNA gyrase B subunit, carboxyl terminus AMD08_RS11690 PF01751 Toprim domain AMD08_RS11690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS11695 PF00450 Serine carboxypeptidase AMD08_RS11700 PF02698 DUF218 domain AMD08_RS11705 PF01384 AMD08_RS11705 AMD08_RS11710 PF01865 Protein of unknown function DUF47 AMD08_RS11715 PF00571 CBS domain AMD08_RS11715 PF01595 AMD08_RS11715 AMD08_RS11715 PF03471 Transporter associated domain AMD08_RS11720 PF06055 AMD08_RS11720 AMD08_RS11725 PF16242 AMD08_RS11725 AMD08_RS11730 PF00296 Luciferase-like monooxygenase AMD08_RS11735 PF00083 Sugar (and other) transporter AMD08_RS11740 PF00005 ABC transporter AMD08_RS11740 PF00664 ABC transporter transmembrane region AMD08_RS11750 PF04055 Radical SAM superfamily AMD08_RS11755 PF14907 Uncharacterised nucleotidyltransferase AMD08_RS11760 PF00534 Glycosyl transferases group 1 AMD08_RS11760 PF13579 Glycosyl transferase 4-like domain AMD08_RS11765 PF00534 Glycosyl transferases group 1 AMD08_RS11765 PF13439 Glycosyltransferase Family 4 AMD08_RS11770 PF08241 Methyltransferase domain AMD08_RS11775 PF01979 Amidohydrolase family AMD08_RS11780 PF13649 Methyltransferase domain AMD08_RS11785 PF02706 Chain length determinant protein AMD08_RS11795 PF00535 Glycosyl transferase family 2 AMD08_RS11800 PF13440 AMD08_RS11800 AMD08_RS11805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD08_RS11810 PF13480 Acetyltransferase (GNAT) domain AMD08_RS11820 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS11825 PF05523 WxcM-like, C-terminal AMD08_RS11830 PF01292 Prokaryotic cytochrome b561 AMD08_RS11840 PF00034 Cytochrome c AMD08_RS11855 PF04542 Sigma-70 region 2 AMD08_RS11855 PF08281 Sigma-70, region 4 AMD08_RS11865 PF00082 Subtilase family AMD08_RS11870 PF01578 AMD08_RS11870 AMD08_RS11875 PF04995 AMD08_RS11875 AMD08_RS11880 PF03100 CcmE AMD08_RS11885 PF01578 AMD08_RS11885 AMD08_RS11885 PF16327 AMD08_RS11885 AMD08_RS11890 PF00578 AhpC/TSA family AMD08_RS11895 PF03918 Cytochrome C biogenesis protein AMD08_RS11905 PF00072 Response regulator receiver domain AMD08_RS11905 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS11905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS11905 PF08448 PAS fold AMD08_RS11910 PF06745 KaiC AMD08_RS11915 PF00072 Response regulator receiver domain AMD08_RS11920 PF00072 Response regulator receiver domain AMD08_RS11920 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS11920 PF00989 PAS fold AMD08_RS11920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS11920 PF08447 PAS fold AMD08_RS11920 PF08448 PAS fold AMD08_RS11935 PF01047 MarR family AMD08_RS11940 PF01494 FAD binding domain AMD08_RS11945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS11945 PF00672 HAMP domain AMD08_RS11945 PF12729 AMD08_RS11945 AMD08_RS11950 PF04343 AMD08_RS11950 AMD08_RS11955 PF00589 Phage integrase family AMD08_RS11955 PF13356 Domain of unknown function (DUF4102) AMD08_RS11960 PF02399 AMD08_RS11960 AMD08_RS11970 PF01527 Transposase AMD08_RS11975 PF13560 Helix-turn-helix domain AMD08_RS11980 PF05284 AMD08_RS11980 AMD08_RS11985 PF04002 RadC-like JAB domain AMD08_RS11990 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD08_RS12000 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AMD08_RS12005 PF11459 AMD08_RS12005 AMD08_RS12005 PF17194 AMD08_RS12005 AMD08_RS12010 PF00589 Phage integrase family AMD08_RS12010 PF13356 Domain of unknown function (DUF4102) AMD08_RS12010 PF14659 Phage integrase, N-terminal SAM-like domain AMD08_RS12025 PF00593 TonB dependent receptor AMD08_RS12025 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS12030 PF07916 AMD08_RS12030 AMD08_RS12035 PF01850 PIN domain AMD08_RS12040 PF04014 Antidote-toxin recognition MazE AMD08_RS12045 PF16263 AMD08_RS12045 AMD08_RS12055 PF04542 Sigma-70 region 2 AMD08_RS12055 PF08281 Sigma-70, region 4 AMD08_RS12060 PF04773 FecR protein AMD08_RS12060 PF16220 AMD08_RS12060 AMD08_RS12065 PF00593 TonB dependent receptor AMD08_RS12065 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS12075 PF10947 AMD08_RS12075 AMD08_RS12080 PF07514 Putative helicase AMD08_RS12080 PF07515 Protein of unknown function (DUF1528) AMD08_RS12085 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMD08_RS12085 PF05345 Putative Ig domain AMD08_RS12085 PF06594 AMD08_RS12085 AMD08_RS12095 PF13437 HlyD family secretion protein AMD08_RS12095 PF13533 Biotin-lipoyl like AMD08_RS12100 PF00005 ABC transporter AMD08_RS12100 PF00664 ABC transporter transmembrane region AMD08_RS12105 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD08_RS12110 PF13614 AAA domain AMD08_RS12125 PF11198 AMD08_RS12125 AMD08_RS12135 PF08900 AMD08_RS12135 AMD08_RS12145 PF00436 Single-strand binding protein family AMD08_RS12155 PF00145 C-5 cytosine-specific DNA methylase AMD08_RS12165 PF13304 AAA domain AMD08_RS12195 PF11284 AMD08_RS12195 AMD08_RS12200 PF00589 Phage integrase family AMD08_RS12200 PF13356 Domain of unknown function (DUF4102) AMD08_RS12200 PF14659 Phage integrase, N-terminal SAM-like domain AMD08_RS12205 PF06250 AMD08_RS12205 AMD08_RS12210 PF01527 Transposase AMD08_RS12220 PF13333 AMD08_RS12220 AMD08_RS12235 PF01695 IstB-like ATP binding protein AMD08_RS12250 PF01609 Transposase DDE domain AMD08_RS12260 PF08845 AMD08_RS12260 AMD08_RS12275 PF00069 Protein kinase domain AMD08_RS12280 PF00593 TonB dependent receptor AMD08_RS12280 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS12290 PF01618 AMD08_RS12290 AMD08_RS12295 PF00691 OmpA family AMD08_RS12295 PF13677 AMD08_RS12295 AMD08_RS12300 PF13614 AAA domain AMD08_RS12305 PF01584 CheW-like domain AMD08_RS12310 PF13466 STAS domain AMD08_RS12315 PF00072 Response regulator receiver domain AMD08_RS12320 PF01584 CheW-like domain AMD08_RS12320 PF01627 Hpt domain AMD08_RS12320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS12320 PF02895 Signal transducing histidine kinase, homodimeric domain AMD08_RS12325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12325 PF00672 HAMP domain AMD08_RS12325 PF12729 AMD08_RS12325 AMD08_RS12335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12335 PF00672 HAMP domain AMD08_RS12335 PF17200 AMD08_RS12335 AMD08_RS12340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12340 PF00672 HAMP domain AMD08_RS12340 PF02743 Cache domain AMD08_RS12345 PF13557 AMD08_RS12345 AMD08_RS12350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12355 PF00672 HAMP domain AMD08_RS12355 PF12729 AMD08_RS12355 AMD08_RS12360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12360 PF00672 HAMP domain AMD08_RS12360 PF12729 AMD08_RS12360 AMD08_RS12365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12365 PF00672 HAMP domain AMD08_RS12365 PF05227 CHASE3 domain AMD08_RS12375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12375 PF00672 HAMP domain AMD08_RS12375 PF12729 AMD08_RS12375 AMD08_RS12380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12380 PF00672 HAMP domain AMD08_RS12385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12385 PF00672 HAMP domain AMD08_RS12385 PF12729 AMD08_RS12385 AMD08_RS12390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12390 PF00672 HAMP domain AMD08_RS12390 PF12729 AMD08_RS12390 AMD08_RS12395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12395 PF00672 HAMP domain AMD08_RS12395 PF17201 AMD08_RS12395 AMD08_RS12400 PF07238 PilZ domain AMD08_RS12400 PF07317 Flagellar regulator YcgR AMD08_RS12405 PF01584 CheW-like domain AMD08_RS12415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS12415 PF00672 HAMP domain AMD08_RS12415 PF12729 AMD08_RS12415 AMD08_RS12420 PF01739 CheR methyltransferase, SAM binding domain AMD08_RS12420 PF03705 CheR methyltransferase, all-alpha domain AMD08_RS12425 PF03975 CheD chemotactic sensory transduction AMD08_RS12430 PF00072 Response regulator receiver domain AMD08_RS12430 PF01339 CheB methylesterase AMD08_RS12435 PF00563 EAL domain AMD08_RS12435 PF00990 GGDEF domain AMD08_RS12435 PF13185 GAF domain AMD08_RS12435 PF13426 PAS domain AMD08_RS12440 PF00561 alpha/beta hydrolase fold AMD08_RS12445 PF00330 Aconitase family (aconitate hydratase) AMD08_RS12445 PF06434 Aconitate hydratase 2 N-terminus AMD08_RS12445 PF11791 Aconitate B N-terminal domain AMD08_RS12450 PF01850 PIN domain AMD08_RS12455 PF04014 Antidote-toxin recognition MazE AMD08_RS12460 PF00330 Aconitase family (aconitate hydratase) AMD08_RS12460 PF00694 Aconitase C-terminal domain AMD08_RS12470 PF00501 AMP-binding enzyme AMD08_RS12470 PF13193 AMP-binding enzyme C-terminal domain AMD08_RS12475 PF00378 Enoyl-CoA hydratase/isomerase family AMD08_RS12480 PF00072 Response regulator receiver domain AMD08_RS12480 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS12480 PF01627 Hpt domain AMD08_RS12480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS12485 PF00072 Response regulator receiver domain AMD08_RS12485 PF01966 HD domain AMD08_RS12490 PF00152 tRNA synthetases class II (D, K and N) AMD08_RS12490 PF01336 OB-fold nucleic acid binding domain AMD08_RS12495 PF00472 RF-1 domain AMD08_RS12495 PF03462 PCRF domain AMD08_RS12500 PF04397 LytTr DNA-binding domain AMD08_RS12505 PF01757 AMD08_RS12505 AMD08_RS12515 PF13683 AMD08_RS12515 AMD08_RS12530 PF15649 AMD08_RS12530 AMD08_RS12540 PF05593 AMD08_RS12540 AMD08_RS12545 PF01368 DHH family AMD08_RS12545 PF02272 DHHA1 domain AMD08_RS12555 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD08_RS12555 PF03449 Transcription elongation factor, N-terminal AMD08_RS12560 PF02142 MGS-like domain AMD08_RS12560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD08_RS12560 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD08_RS12570 PF00117 Glutamine amidotransferase class-I AMD08_RS12570 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD08_RS12575 PF01113 Dihydrodipicolinate reductase, N-terminus AMD08_RS12575 PF05173 Dihydrodipicolinate reductase, C-terminus AMD08_RS12580 PF03473 MOSC domain AMD08_RS12580 PF03475 3-alpha domain AMD08_RS12585 PF00155 Aminotransferase class I and II AMD08_RS12600 PF02421 Ferrous iron transport protein B AMD08_RS12600 PF07664 AMD08_RS12600 AMD08_RS12600 PF07670 Nucleoside recognition AMD08_RS12605 PF04023 FeoA domain AMD08_RS12610 PF00378 Enoyl-CoA hydratase/isomerase family AMD08_RS12615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS12620 PF00682 HMGL-like AMD08_RS12625 PF00106 short chain dehydrogenase AMD08_RS12630 PF01132 Elongation factor P (EF-P) OB domain AMD08_RS12630 PF08207 Elongation factor P (EF-P) KOW-like domain AMD08_RS12630 PF09285 Elongation factor P, C-terminal AMD08_RS12640 PF13387 AMD08_RS12640 AMD08_RS12645 PF09498 AMD08_RS12645 AMD08_RS12650 PF01565 FAD binding domain AMD08_RS12650 PF02913 FAD linked oxidases, C-terminal domain AMD08_RS12655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD08_RS12655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD08_RS12660 PF00293 NUDIX domain AMD08_RS12665 PF13520 Amino acid permease AMD08_RS12670 PF13520 Amino acid permease AMD08_RS12675 PF00596 Class II Aldolase and Adducin N-terminal domain AMD08_RS12680 PF03079 ARD/ARD' family AMD08_RS12690 PF01650 Peptidase C13 family AMD08_RS12695 PF00149 Calcineurin-like phosphoesterase AMD08_RS12695 PF16370 AMD08_RS12695 AMD08_RS12695 PF16371 AMD08_RS12695 AMD08_RS12700 PF01502 Phosphoribosyl-AMP cyclohydrolase AMD08_RS12700 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMD08_RS12705 PF00977 Histidine biosynthesis protein AMD08_RS12710 PF00977 Histidine biosynthesis protein AMD08_RS12715 PF00117 Glutamine amidotransferase class-I AMD08_RS12720 PF00475 Imidazoleglycerol-phosphate dehydratase AMD08_RS12720 PF13242 HAD-hyrolase-like AMD08_RS12725 PF00155 Aminotransferase class I and II AMD08_RS12730 PF00815 Histidinol dehydrogenase AMD08_RS12735 PF01634 ATP phosphoribosyltransferase AMD08_RS12735 PF08029 HisG, C-terminal domain AMD08_RS12740 PF01371 Trp repressor protein AMD08_RS12745 PF03129 Anticodon binding domain AMD08_RS12745 PF13393 Histidyl-tRNA synthetase AMD08_RS12750 PF00027 Cyclic nucleotide-binding domain AMD08_RS12750 PF13545 Crp-like helix-turn-helix domain AMD08_RS12755 PF13645 AMD08_RS12755 AMD08_RS12760 PF00291 Pyridoxal-phosphate dependent enzyme AMD08_RS12760 PF14821 Threonine synthase N terminus AMD08_RS12765 PF07110 EthD domain AMD08_RS12770 PF00288 GHMP kinases N terminal domain AMD08_RS12770 PF08544 GHMP kinases C terminal AMD08_RS12775 PF00696 Amino acid kinase family AMD08_RS12775 PF00742 Homoserine dehydrogenase AMD08_RS12775 PF03447 Homoserine dehydrogenase, NAD binding domain AMD08_RS12775 PF13840 ACT domain AMD08_RS12780 PF03073 TspO/MBR family AMD08_RS12785 PF05594 AMD08_RS12785 AMD08_RS12790 PF05594 AMD08_RS12790 AMD08_RS12790 PF13332 AMD08_RS12790 AMD08_RS12795 PF05594 AMD08_RS12795 AMD08_RS12795 PF05860 haemagglutination activity domain AMD08_RS12795 PF13332 AMD08_RS12795 AMD08_RS12800 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD08_RS12800 PF08479 POTRA domain, ShlB-type AMD08_RS12805 PF13432 Tetratricopeptide repeat AMD08_RS12805 PF14559 Tetratricopeptide repeat AMD08_RS12810 PF01522 Polysaccharide deacetylase AMD08_RS12810 PF14883 Hypothetical glycosyl hydrolase family 13 AMD08_RS12815 PF13641 Glycosyltransferase like family 2 AMD08_RS12820 PF13994 AMD08_RS12820 AMD08_RS12830 PF00171 Aldehyde dehydrogenase family AMD08_RS12835 PF13828 AMD08_RS12835 AMD08_RS12840 PF08241 Methyltransferase domain AMD08_RS12845 PF01180 Dihydroorotate dehydrogenase AMD08_RS12850 PF01565 FAD binding domain AMD08_RS12850 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMD08_RS12855 PF00892 EamA-like transporter family AMD08_RS12860 PF01177 Asp/Glu/Hydantoin racemase AMD08_RS12865 PF07690 Major Facilitator Superfamily AMD08_RS12870 PF01569 PAP2 superfamily AMD08_RS12875 PF04551 GcpE protein AMD08_RS12880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS12885 PF00072 Response regulator receiver domain AMD08_RS12885 PF02954 Bacterial regulatory protein, Fis family AMD08_RS12890 PF00150 Cellulase (glycosyl hydrolase family 5) AMD08_RS12895 PF00563 EAL domain AMD08_RS12895 PF00990 GGDEF domain AMD08_RS12895 PF01590 GAF domain AMD08_RS12900 PF00474 Sodium:solute symporter family AMD08_RS12905 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD08_RS12905 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD08_RS12910 PF05787 Bacterial protein of unknown function (DUF839) AMD08_RS12920 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMD08_RS12925 PF00342 Phosphoglucose isomerase AMD08_RS12930 PF02261 Aspartate decarboxylase AMD08_RS12935 PF02569 Pantoate-beta-alanine ligase AMD08_RS12940 PF02548 Ketopantoate hydroxymethyltransferase AMD08_RS12945 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD08_RS12950 PF01743 Poly A polymerase head domain AMD08_RS12950 PF12626 Polymerase A arginine-rich C-terminus AMD08_RS12950 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD08_RS12960 PF02649 Type I GTP cyclohydrolase folE2 AMD08_RS12965 PF01520 N-acetylmuramoyl-L-alanine amidase AMD08_RS12965 PF11741 AMIN domain AMD08_RS12970 PF00128 Alpha amylase, catalytic domain AMD08_RS12975 PF01527 Transposase AMD08_RS12980 PF13683 AMD08_RS12980 AMD08_RS12995 PF01471 Putative peptidoglycan binding domain AMD08_RS13005 PF04610 AMD08_RS13005 AMD08_RS13015 PF03135 AMD08_RS13015 AMD08_RS13020 PF05101 AMD08_RS13020 AMD08_RS13025 PF04956 AMD08_RS13025 AMD08_RS13030 PF01464 Transglycosylase SLT domain AMD08_RS13035 PF00437 Type II/IV secretion system protein AMD08_RS13040 PF03743 Bacterial conjugation TrbI-like protein AMD08_RS13045 PF03524 Conjugal transfer protein AMD08_RS13050 PF04335 VirB8 protein AMD08_RS13055 PF10671 Toxin co-regulated pilus biosynthesis protein Q AMD08_RS13060 PF02534 Type IV secretory system Conjugative DNA transfer AMD08_RS13075 PF00271 Helicase conserved C-terminal domain AMD08_RS13075 PF02151 UvrB/uvrC motif AMD08_RS13075 PF04851 Type III restriction enzyme, res subunit AMD08_RS13075 PF12344 Ultra-violet resistance protein B AMD08_RS13110 PF01527 Transposase AMD08_RS13120 PF13333 AMD08_RS13120 AMD08_RS13125 PF13936 Helix-turn-helix domain AMD08_RS13150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS13150 PF03466 LysR substrate binding domain AMD08_RS13155 PF02525 Flavodoxin-like fold AMD08_RS13160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD08_RS13160 PF02403 Seryl-tRNA synthetase N-terminal domain AMD08_RS13165 PF03544 Gram-negative bacterial TonB protein C-terminal AMD08_RS13170 PF03544 Gram-negative bacterial TonB protein C-terminal AMD08_RS13175 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD08_RS13180 PF00800 Prephenate dehydratase AMD08_RS13180 PF01817 Chorismate mutase type II AMD08_RS13180 PF01842 ACT domain AMD08_RS13185 PF00266 Aminotransferase class-V AMD08_RS13190 PF00174 Oxidoreductase molybdopterin binding domain AMD08_RS13195 PF01794 AMD08_RS13195 AMD08_RS13200 PF16697 AMD08_RS13200 AMD08_RS13205 PF09650 AMD08_RS13205 AMD08_RS13210 PF05597 AMD08_RS13210 AMD08_RS13220 PF04471 Restriction endonuclease AMD08_RS13225 PF00392 Bacterial regulatory proteins, gntR family AMD08_RS13225 PF07702 UTRA domain AMD08_RS13235 PF01979 Amidohydrolase family AMD08_RS13240 PF07969 Amidohydrolase family AMD08_RS13245 PF00221 Aromatic amino acid lyase AMD08_RS13250 PF05013 N-formylglutamate amidohydrolase AMD08_RS13255 PF01175 Urocanase AMD08_RS13265 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD08_RS13265 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD08_RS13270 PF01008 Initiation factor 2 subunit family AMD08_RS13275 PF11218 AMD08_RS13275 AMD08_RS13280 PF00152 tRNA synthetases class II (D, K and N) AMD08_RS13285 PF00533 BRCA1 C Terminus (BRCT) domain AMD08_RS13285 PF01653 NAD-dependent DNA ligase adenylation domain AMD08_RS13285 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMD08_RS13285 PF03120 NAD-dependent DNA ligase OB-fold domain AMD08_RS13285 PF12826 Helix-hairpin-helix motif AMD08_RS13290 PF00155 Aminotransferase class I and II AMD08_RS13300 PF04354 ZipA, C-terminal FtsZ-binding domain AMD08_RS13305 PF02463 RecF/RecN/SMC N terminal domain AMD08_RS13310 PF01281 Ribosomal protein L9, N-terminal domain AMD08_RS13310 PF03948 Ribosomal protein L9, C-terminal domain AMD08_RS13315 PF01084 Ribosomal protein S18 AMD08_RS13320 PF01250 Ribosomal protein S6 AMD08_RS13325 PF01521 Iron-sulphur cluster biosynthesis AMD08_RS13330 PF00152 tRNA synthetases class II (D, K and N) AMD08_RS13330 PF01336 OB-fold nucleic acid binding domain AMD08_RS13350 PF04299 Putative FMN-binding domain AMD08_RS13360 PF00161 Ribosome inactivating protein AMD08_RS13365 PF00072 Response regulator receiver domain AMD08_RS13365 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS13395 PF11655 AMD08_RS13395 AMD08_RS13400 PF11655 AMD08_RS13400 AMD08_RS13405 PF05838 Glycosyl hydrolase 108 AMD08_RS13405 PF09374 Predicted Peptidoglycan domain AMD08_RS13410 PF00484 Carbonic anhydrase AMD08_RS13415 PF06052 3-hydroxyanthranilic acid dioxygenase AMD08_RS13420 PF12805 AMD08_RS13420 AMD08_RS13420 PF13515 AMD08_RS13420 AMD08_RS13425 PF00266 Aminotransferase class-V AMD08_RS13430 PF01494 FAD binding domain AMD08_RS13435 PF00929 Exonuclease AMD08_RS13435 PF08411 Exonuclease C-terminal AMD08_RS13440 PF09365 AMD08_RS13440 AMD08_RS13450 PF11159 AMD08_RS13450 AMD08_RS13455 PF06189 AMD08_RS13455 AMD08_RS13460 PF01513 ATP-NAD kinase AMD08_RS13465 PF01170 Putative RNA methylase family UPF0020 AMD08_RS13465 PF02926 THUMP domain AMD08_RS13465 PF10672 S-adenosylmethionine-dependent methyltransferase AMD08_RS13470 PF00005 ABC transporter AMD08_RS13475 PF00583 Acetyltransferase (GNAT) family AMD08_RS13480 PF05728 Uncharacterised protein family (UPF0227) AMD08_RS13485 PF03473 MOSC domain AMD08_RS13490 PF01510 N-acetylmuramoyl-L-alanine amidase AMD08_RS13495 PF07920 Protein of unknown function (DUF1684) AMD08_RS13500 PF00581 Rhodanese-like domain AMD08_RS13505 PF00293 NUDIX domain AMD08_RS13505 PF06945 AMD08_RS13505 AMD08_RS13510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD08_RS13510 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD08_RS13515 PF00378 Enoyl-CoA hydratase/isomerase family AMD08_RS13525 PF00633 Helix-hairpin-helix motif AMD08_RS13525 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD08_RS13530 PF00916 AMD08_RS13530 AMD08_RS13535 PF00484 Carbonic anhydrase AMD08_RS13545 PF07396 Phosphate-selective porin O and P AMD08_RS13550 PF12849 PBP superfamily domain AMD08_RS13555 PF12849 PBP superfamily domain AMD08_RS13560 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS13565 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS13570 PF00005 ABC transporter AMD08_RS13575 PF01895 PhoU domain AMD08_RS13580 PF11776 Domain of unknown function (DUF3315) AMD08_RS13585 PF00929 Exonuclease AMD08_RS13590 PF00990 GGDEF domain AMD08_RS13590 PF07494 Two component regulator propeller AMD08_RS13590 PF07495 Y_Y_Y domain AMD08_RS13595 PF00588 SpoU rRNA Methylase family AMD08_RS13595 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD08_RS13600 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD08_RS13605 PF00575 S1 RNA binding domain AMD08_RS13605 PF00773 RNB domain AMD08_RS13605 PF08206 Ribonuclease B OB domain AMD08_RS13615 PF13472 GDSL-like Lipase/Acylhydrolase family AMD08_RS13620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD08_RS13620 PF02770 Acyl-CoA dehydrogenase, middle domain AMD08_RS13620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD08_RS13625 PF01022 Bacterial regulatory protein, arsR family AMD08_RS13625 PF08241 Methyltransferase domain AMD08_RS13630 PF02574 Homocysteine S-methyltransferase AMD08_RS13635 PF00809 Pterin binding enzyme AMD08_RS13635 PF02310 B12 binding domain AMD08_RS13635 PF02607 B12 binding domain AMD08_RS13635 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMD08_RS13640 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AMD08_RS13645 PF00294 pfkB family carbohydrate kinase AMD08_RS13650 PF07690 Major Facilitator Superfamily AMD08_RS13655 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS13655 PF13377 Periplasmic binding protein-like domain AMD08_RS13660 PF13557 AMD08_RS13660 AMD08_RS13665 PF09831 AMD08_RS13665 AMD08_RS13670 PF04102 SlyX AMD08_RS13675 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD08_RS13675 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD08_RS13675 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD08_RS13680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD08_RS13680 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD08_RS13685 PF00255 Glutathione peroxidase AMD08_RS13690 PF00392 Bacterial regulatory proteins, gntR family AMD08_RS13695 PF00005 ABC transporter AMD08_RS13710 PF11101 AMD08_RS13710 AMD08_RS13720 PF00206 Lyase AMD08_RS13720 PF10415 Fumarase C C-terminus AMD08_RS13725 PF00571 CBS domain AMD08_RS13725 PF01595 AMD08_RS13725 AMD08_RS13725 PF03471 Transporter associated domain AMD08_RS13730 PF00188 Cysteine-rich secretory protein family AMD08_RS13735 PF00206 Lyase AMD08_RS13735 PF08328 Adenylosuccinate lyase C-terminal AMD08_RS13740 PF11259 AMD08_RS13740 AMD08_RS13745 PF08007 Cupin superfamily protein AMD08_RS13750 PF13673 Acetyltransferase (GNAT) domain AMD08_RS13755 PF00676 Dehydrogenase E1 component AMD08_RS13755 PF02779 Transketolase, pyrimidine binding domain AMD08_RS13755 PF16078 AMD08_RS13755 AMD08_RS13755 PF16870 AMD08_RS13755 AMD08_RS13760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD08_RS13760 PF00364 Biotin-requiring enzyme AMD08_RS13760 PF02817 e3 binding domain AMD08_RS13765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD08_RS13765 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS13770 PF03641 Possible lysine decarboxylase AMD08_RS13775 PF01205 Uncharacterized protein family UPF0029 AMD08_RS13775 PF09186 Domain of unknown function (DUF1949) AMD08_RS13780 PF00005 ABC transporter AMD08_RS13780 PF00664 ABC transporter transmembrane region AMD08_RS13785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS13785 PF03466 LysR substrate binding domain AMD08_RS13795 PF16576 AMD08_RS13795 AMD08_RS13800 PF02321 Outer membrane efflux protein AMD08_RS13810 PF01842 ACT domain AMD08_RS13810 PF02153 Prephenate dehydrogenase AMD08_RS13815 PF08543 Phosphomethylpyrimidine kinase AMD08_RS13820 PF00226 DnaJ domain AMD08_RS13820 PF00684 DnaJ central domain AMD08_RS13820 PF01556 DnaJ C terminal domain AMD08_RS13825 PF00012 Hsp70 protein AMD08_RS13830 PF01025 GrpE AMD08_RS13835 PF01628 HrcA protein C terminal domain AMD08_RS13835 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMD08_RS13840 PF02463 RecF/RecN/SMC N terminal domain AMD08_RS13845 PF01475 Ferric uptake regulator family AMD08_RS13850 PF04355 SmpA / OmlA family AMD08_RS13855 PF03658 RnfH family Ubiquitin AMD08_RS13860 PF03364 Polyketide cyclase / dehydrase and lipid transport AMD08_RS13865 PF01668 SmpB protein AMD08_RS13870 PF00082 Subtilase family AMD08_RS13890 PF13910 AMD08_RS13890 AMD08_RS13895 PF03389 MobA/MobL family AMD08_RS13900 PF00665 Integrase core domain AMD08_RS13905 PF01527 Transposase AMD08_RS13915 PF01381 Helix-turn-helix AMD08_RS13930 PF05598 AMD08_RS13930 AMD08_RS13935 PF00589 Phage integrase family AMD08_RS13945 PF00816 H-NS histone family AMD08_RS13955 PF06114 Domain of unknown function (DUF955) AMD08_RS13960 PF01381 Helix-turn-helix AMD08_RS13975 PF00990 GGDEF domain AMD08_RS13975 PF05227 CHASE3 domain AMD08_RS13975 PF13185 GAF domain AMD08_RS13985 PF00990 GGDEF domain AMD08_RS13990 PF02321 Outer membrane efflux protein AMD08_RS13995 PF00106 short chain dehydrogenase AMD08_RS14000 PF00873 AcrB/AcrD/AcrF family AMD08_RS14005 PF16576 AMD08_RS14005 AMD08_RS14010 PF00106 short chain dehydrogenase AMD08_RS14020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS14020 PF03466 LysR substrate binding domain AMD08_RS14025 PF00691 OmpA family AMD08_RS14025 PF13488 AMD08_RS14025 AMD08_RS14030 PF00875 DNA photolyase AMD08_RS14030 PF03441 FAD binding domain of DNA photolyase AMD08_RS14035 PF00772 DnaB-like helicase N terminal domain AMD08_RS14035 PF03796 DnaB-like helicase C terminal domain AMD08_RS14040 PF03358 NADPH-dependent FMN reductase AMD08_RS14045 PF00733 Asparagine synthase AMD08_RS14045 PF13537 Glutamine amidotransferase domain AMD08_RS14055 PF00043 Glutathione S-transferase, C-terminal domain AMD08_RS14055 PF02798 Glutathione S-transferase, N-terminal domain AMD08_RS14060 PF01841 Transglutaminase-like superfamily AMD08_RS14060 PF12969 Domain of Unknown Function with PDB structure (DUF3857) AMD08_RS14065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD08_RS14065 PF02770 Acyl-CoA dehydrogenase, middle domain AMD08_RS14065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD08_RS14070 PF05433 AMD08_RS14070 AMD08_RS14080 PF01026 TatD related DNase AMD08_RS14085 PF00899 ThiF family AMD08_RS14090 PF01322 Cytochrome C' AMD08_RS14095 PF05433 AMD08_RS14095 AMD08_RS14100 PF00313 'Cold-shock' DNA-binding domain AMD08_RS14105 PF04306 AMD08_RS14105 AMD08_RS14110 PF02253 Phospholipase A1 AMD08_RS14115 PF00484 Carbonic anhydrase AMD08_RS14120 PF02798 Glutathione S-transferase, N-terminal domain AMD08_RS14120 PF14497 Glutathione S-transferase, C-terminal domain AMD08_RS14125 PF05681 AMD08_RS14125 AMD08_RS14125 PF05683 Fumarase C-terminus AMD08_RS14130 PF00005 ABC transporter AMD08_RS14135 PF00175 Oxidoreductase NAD-binding domain AMD08_RS14135 PF00970 Oxidoreductase FAD-binding domain AMD08_RS14140 PF00255 Glutathione peroxidase AMD08_RS14145 PF01432 Peptidase family M3 AMD08_RS14150 PF01047 MarR family AMD08_RS14155 PF13739 Domain of unknown function (DUF4163) AMD08_RS14160 PF14542 GCN5-related N-acetyl-transferase AMD08_RS14170 PF01694 Rhomboid family AMD08_RS14175 PF00854 POT family AMD08_RS14180 PF00246 Zinc carboxypeptidase AMD08_RS14185 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD08_RS14185 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD08_RS14185 PF14310 Fibronectin type III-like domain AMD08_RS14195 PF07690 Major Facilitator Superfamily AMD08_RS14200 PF00529 HlyD family secretion protein AMD08_RS14200 PF16576 AMD08_RS14200 AMD08_RS14205 PF02321 Outer membrane efflux protein AMD08_RS14210 PF01047 MarR family AMD08_RS14215 PF02311 AraC-like ligand binding domain AMD08_RS14215 PF12833 Helix-turn-helix domain AMD08_RS14220 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD08_RS14220 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD08_RS14230 PF05724 Thiopurine S-methyltransferase (TPMT) AMD08_RS14235 PF00210 Ferritin-like domain AMD08_RS14240 PF01804 Penicillin amidase AMD08_RS14245 PF00593 TonB dependent receptor AMD08_RS14245 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS14250 PF13229 Right handed beta helix region AMD08_RS14255 PF00733 Asparagine synthase AMD08_RS14255 PF13537 Glutamine amidotransferase domain AMD08_RS14260 PF01546 Peptidase family M20/M25/M40 AMD08_RS14260 PF07687 Peptidase dimerisation domain AMD08_RS14265 PF03960 ArsC family AMD08_RS14270 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS14270 PF14602 Hexapeptide repeat of succinyl-transferase AMD08_RS14270 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMD08_RS14275 PF01909 Nucleotidyltransferase domain AMD08_RS14275 PF01966 HD domain AMD08_RS14275 PF08335 GlnD PII-uridylyltransferase AMD08_RS14280 PF00557 Metallopeptidase family M24 AMD08_RS14285 PF05229 AMD08_RS14285 AMD08_RS14290 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AMD08_RS14295 PF00577 Outer membrane usher protein AMD08_RS14295 PF13953 PapC C-terminal domain AMD08_RS14300 PF05229 AMD08_RS14300 AMD08_RS14310 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AMD08_RS14315 PF00318 Ribosomal protein S2 AMD08_RS14320 PF00889 Elongation factor TS AMD08_RS14325 PF00990 GGDEF domain AMD08_RS14325 PF08668 HDOD domain AMD08_RS14330 PF00696 Amino acid kinase family AMD08_RS14335 PF01765 Ribosome recycling factor AMD08_RS14340 PF01255 Putative undecaprenyl diphosphate synthase AMD08_RS14345 PF01148 Cytidylyltransferase family AMD08_RS14350 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMD08_RS14350 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AMD08_RS14350 PF13288 DXP reductoisomerase C-terminal domain AMD08_RS14355 PF02163 Peptidase family M50 AMD08_RS14360 PF01103 Surface antigen AMD08_RS14360 PF07244 Surface antigen variable number repeat AMD08_RS14370 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS14370 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMD08_RS14375 PF07977 FabA-like domain AMD08_RS14380 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS14380 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMD08_RS14385 PF02684 AMD08_RS14385 AMD08_RS14390 PF01351 Ribonuclease HII AMD08_RS14395 PF01336 OB-fold nucleic acid binding domain AMD08_RS14395 PF02811 PHP domain AMD08_RS14395 PF07733 Bacterial DNA polymerase III alpha subunit AMD08_RS14395 PF14579 Helix-hairpin-helix motif AMD08_RS14400 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMD08_RS14405 PF14559 Tetratricopeptide repeat AMD08_RS14415 PF03653 AMD08_RS14415 AMD08_RS14420 PF13489 Methyltransferase domain AMD08_RS14425 PF06850 AMD08_RS14425 AMD08_RS14430 PF13796 AMD08_RS14430 AMD08_RS14435 PF03551 Transcriptional regulator PadR-like family AMD08_RS14440 PF13372 Alginate export AMD08_RS14450 PF04367 AMD08_RS14450 AMD08_RS14455 PF02592 AMD08_RS14455 AMD08_RS14460 PF05960 Bacterial protein of unknown function (DUF885) AMD08_RS14465 PF02574 Homocysteine S-methyltransferase AMD08_RS14470 PF00324 Amino acid permease AMD08_RS14475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS14480 PF00005 ABC transporter AMD08_RS14485 PF01433 Peptidase family M1 AMD08_RS14485 PF12679 AMD08_RS14485 AMD08_RS14490 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AMD08_RS14495 PF01588 Putative tRNA binding domain AMD08_RS14495 PF09334 tRNA synthetases class I (M) AMD08_RS14500 PF12710 haloacid dehalogenase-like hydrolase AMD08_RS14505 PF04060 Putative Fe-S cluster AMD08_RS14505 PF14697 4Fe-4S dicluster domain AMD08_RS14525 PF04542 Sigma-70 region 2 AMD08_RS14525 PF08281 Sigma-70, region 4 AMD08_RS14530 PF10099 AMD08_RS14530 AMD08_RS14535 PF00487 AMD08_RS14535 AMD08_RS14540 PF01593 Flavin containing amine oxidoreductase AMD08_RS14545 PF07103 AMD08_RS14545 AMD08_RS14550 PF02353 Mycolic acid cyclopropane synthetase AMD08_RS14555 PF11086 AMD08_RS14555 AMD08_RS14560 PF06966 AMD08_RS14560 AMD08_RS14565 PF02353 Mycolic acid cyclopropane synthetase AMD08_RS14570 PF01042 Endoribonuclease L-PSP AMD08_RS14575 PF06197 AMD08_RS14575 AMD08_RS14580 PF03706 AMD08_RS14580 AMD08_RS14580 PF09924 Uncharacterized conserved protein (DUF2156) AMD08_RS14585 PF06057 Bacterial virulence protein (VirJ) AMD08_RS14590 PF09791 AMD08_RS14590 AMD08_RS14600 PF13563 2'-5' RNA ligase superfamily AMD08_RS14605 PF09537 Domain of unknown function (DUF2383) AMD08_RS14615 PF07690 Major Facilitator Superfamily AMD08_RS14620 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD08_RS14625 PF03831 PhnA protein AMD08_RS14625 PF08274 PhnA Zinc-Ribbon AMD08_RS14630 PF01545 Cation efflux family AMD08_RS14635 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD08_RS14640 PF06723 MreB/Mbl protein AMD08_RS14655 PF00924 Mechanosensitive ion channel AMD08_RS14660 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD08_RS14665 PF10982 Protein of unknown function (DUF2789) AMD08_RS14670 PF07043 AMD08_RS14670 AMD08_RS14675 PF01863 Protein of unknown function DUF45 AMD08_RS14680 PF13640 2OG-Fe(II) oxygenase superfamily AMD08_RS14685 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD08_RS14685 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMD08_RS14690 PF00082 Subtilase family AMD08_RS14690 PF03797 Autotransporter beta-domain AMD08_RS14690 PF12951 AMD08_RS14690 AMD08_RS14695 PF00108 Thiolase, N-terminal domain AMD08_RS14695 PF02803 Thiolase, C-terminal domain AMD08_RS14710 PF00990 GGDEF domain AMD08_RS14710 PF05227 CHASE3 domain AMD08_RS14710 PF13185 GAF domain AMD08_RS14715 PF04519 AMD08_RS14715 AMD08_RS14735 PF01068 ATP dependent DNA ligase domain AMD08_RS14735 PF04675 DNA ligase N terminus AMD08_RS14735 PF04679 ATP dependent DNA ligase C terminal region AMD08_RS14740 PF00270 DEAD/DEAH box helicase AMD08_RS14740 PF00271 Helicase conserved C-terminal domain AMD08_RS14740 PF08494 AMD08_RS14740 AMD08_RS14745 PF00149 Calcineurin-like phosphoesterase AMD08_RS14750 PF01494 FAD binding domain AMD08_RS14755 PF00313 'Cold-shock' DNA-binding domain AMD08_RS14760 PF01048 Phosphorylase superfamily AMD08_RS14765 PF00156 Phosphoribosyl transferase domain AMD08_RS14770 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD08_RS14775 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMD08_RS14780 PF13450 NAD(P)-binding Rossmann-like domain AMD08_RS14785 PF01323 DSBA-like thioredoxin domain AMD08_RS14790 PF01928 CYTH domain AMD08_RS14795 PF05958 tRNA (Uracil-5-)-methyltransferase AMD08_RS14800 PF00072 Response regulator receiver domain AMD08_RS14800 PF01627 Hpt domain AMD08_RS14805 PF02565 Recombination protein O C terminal AMD08_RS14805 PF11967 Recombination protein O N terminal AMD08_RS14810 PF01926 50S ribosome-binding GTPase AMD08_RS14810 PF07650 KH domain AMD08_RS14815 PF00035 Double-stranded RNA binding motif AMD08_RS14815 PF14622 Ribonuclease-III-like AMD08_RS14820 PF16137 AMD08_RS14820 AMD08_RS14825 PF00717 Peptidase S24-like AMD08_RS14830 PF00009 Elongation factor Tu GTP binding domain AMD08_RS14830 PF00679 Elongation factor G C-terminus AMD08_RS14830 PF03144 Elongation factor Tu domain 2 AMD08_RS14830 PF06421 GTP-binding protein LepA C-terminus AMD08_RS14835 PF13180 PDZ domain AMD08_RS14835 PF13365 Trypsin-like peptidase domain AMD08_RS14840 PF03872 Anti sigma-E protein RseA, N-terminal domain AMD08_RS14845 PF04542 Sigma-70 region 2 AMD08_RS14845 PF08281 Sigma-70, region 4 AMD08_RS14850 PF00378 Enoyl-CoA hydratase/isomerase family AMD08_RS14850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD08_RS14850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD08_RS14855 PF01545 Cation efflux family AMD08_RS14860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD08_RS14860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD08_RS14865 PF16113 AMD08_RS14865 AMD08_RS14870 PF00378 Enoyl-CoA hydratase/isomerase family AMD08_RS14875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD08_RS14875 PF02770 Acyl-CoA dehydrogenase, middle domain AMD08_RS14875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD08_RS14880 PF00171 Aldehyde dehydrogenase family AMD08_RS14885 PF06114 Domain of unknown function (DUF955) AMD08_RS14885 PF09856 AMD08_RS14885 AMD08_RS14885 PF13560 Helix-turn-helix domain AMD08_RS14890 PF00593 TonB dependent receptor AMD08_RS14890 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS14895 PF07745 Glycosyl hydrolase family 53 AMD08_RS14900 PF00703 Glycosyl hydrolases family 2 AMD08_RS14900 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD08_RS14900 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD08_RS14900 PF16355 AMD08_RS14900 AMD08_RS14910 PF00754 F5/8 type C domain AMD08_RS14910 PF01120 Alpha-L-fucosidase AMD08_RS14915 PF14085 AMD08_RS14915 AMD08_RS14920 PF16158 AMD08_RS14920 AMD08_RS14925 PF05593 AMD08_RS14925 AMD08_RS14930 PF00488 MutS domain V AMD08_RS14930 PF01624 MutS domain I AMD08_RS14930 PF05188 MutS domain II AMD08_RS14930 PF05190 MutS family domain IV AMD08_RS14930 PF05192 MutS domain III AMD08_RS14935 PF06078 Bacterial protein of unknown function (DUF937) AMD08_RS14940 PF00141 Peroxidase AMD08_RS14945 PF01479 S4 domain AMD08_RS14950 PF00043 Glutathione S-transferase, C-terminal domain AMD08_RS14950 PF13417 Glutathione S-transferase, N-terminal domain AMD08_RS14955 PF08279 HTH domain AMD08_RS14955 PF13280 AMD08_RS14955 AMD08_RS14965 PF01554 MatE AMD08_RS14970 PF01245 Ribosomal protein L19 AMD08_RS14975 PF01746 tRNA (Guanine-1)-methyltransferase AMD08_RS14980 PF01782 RimM N-terminal domain AMD08_RS14980 PF05239 PRC-barrel domain AMD08_RS14985 PF00886 Ribosomal protein S16 AMD08_RS14990 PF01063 Aminotransferase class IV AMD08_RS14995 PF03060 Nitronate monooxygenase AMD08_RS15000 PF00448 SRP54-type protein, GTPase domain AMD08_RS15000 PF02881 SRP54-type protein, helical bundle domain AMD08_RS15000 PF02978 Signal peptide binding domain AMD08_RS15005 PF01578 AMD08_RS15005 AMD08_RS15010 PF01263 Aldose 1-epimerase AMD08_RS15020 PF06964 Alpha-L-arabinofuranosidase C-terminus AMD08_RS15025 PF00722 Glycosyl hydrolases family 16 AMD08_RS15030 PF00072 Response regulator receiver domain AMD08_RS15035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS15035 PF13426 PAS domain AMD08_RS15040 PF00072 Response regulator receiver domain AMD08_RS15040 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS15040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS15040 PF13185 GAF domain AMD08_RS15045 PF01739 CheR methyltransferase, SAM binding domain AMD08_RS15045 PF03705 CheR methyltransferase, all-alpha domain AMD08_RS15050 PF01339 CheB methylesterase AMD08_RS15055 PF00072 Response regulator receiver domain AMD08_RS15055 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS15055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS15060 PF07237 Protein of unknown function (DUF1428) AMD08_RS15065 PF00085 Thioredoxin AMD08_RS15070 PF00593 TonB dependent receptor AMD08_RS15070 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS15075 PF04616 Glycosyl hydrolases family 43 AMD08_RS15080 PF00072 Response regulator receiver domain AMD08_RS15080 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS15080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS15080 PF08448 PAS fold AMD08_RS15085 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS15085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS15090 PF07228 Stage II sporulation protein E (SpoIIE) AMD08_RS15090 PF13581 Histidine kinase-like ATPase domain AMD08_RS15095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS15105 PF01740 STAS domain AMD08_RS15105 PF14361 AMD08_RS15105 AMD08_RS15115 PF00183 Hsp90 protein AMD08_RS15115 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS15120 PF12833 Helix-turn-helix domain AMD08_RS15125 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS15130 PF05656 AMD08_RS15130 AMD08_RS15135 PF13481 AAA domain AMD08_RS15135 PF13541 Subunit ChlI of Mg-chelatase AMD08_RS15140 PF05299 M61 glycyl aminopeptidase AMD08_RS15140 PF07720 Tetratricopeptide repeat AMD08_RS15145 PF03626 AMD08_RS15145 AMD08_RS15150 PF00510 Cytochrome c oxidase subunit III AMD08_RS15155 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD08_RS15160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD08_RS15160 PF06481 COX Aromatic Rich Motif AMD08_RS15170 PF02401 LytB protein AMD08_RS15175 PF01252 AMD08_RS15175 AMD08_RS15180 PF00133 tRNA synthetases class I (I, L, M and V) AMD08_RS15180 PF06827 Zinc finger found in FPG and IleRS AMD08_RS15180 PF08264 Anticodon-binding domain of tRNA AMD08_RS15185 PF01687 Riboflavin kinase AMD08_RS15185 PF06574 FAD synthetase AMD08_RS15190 PF03023 AMD08_RS15190 AMD08_RS15195 PF01649 Ribosomal protein S20 AMD08_RS15200 PF01018 GTP1/OBG AMD08_RS15200 PF01926 50S ribosome-binding GTPase AMD08_RS15205 PF01016 Ribosomal L27 protein AMD08_RS15210 PF00829 Ribosomal prokaryotic L21 protein AMD08_RS15215 PF00005 ABC transporter AMD08_RS15220 PF13279 Thioesterase-like superfamily AMD08_RS15225 PF04314 Protein of unknown function (DUF461) AMD08_RS15230 PF00378 Enoyl-CoA hydratase/isomerase family AMD08_RS15235 PF13622 Thioesterase-like superfamily AMD08_RS15240 PF09413 Domain of unknown function (DUF2007) AMD08_RS15250 PF13202 EF hand AMD08_RS15250 PF13499 EF-hand domain pair AMD08_RS15255 PF04376 AMD08_RS15255 AMD08_RS15255 PF04377 AMD08_RS15255 AMD08_RS15260 PF03372 Endonuclease/Exonuclease/phosphatase family AMD08_RS15265 PF02222 ATP-grasp domain AMD08_RS15270 PF01145 SPFH domain / Band 7 family AMD08_RS15285 PF02557 D-alanyl-D-alanine carboxypeptidase AMD08_RS15290 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD08_RS15295 PF04241 AMD08_RS15295 AMD08_RS15300 PF10604 Polyketide cyclase / dehydrase and lipid transport AMD08_RS15305 PF00072 Response regulator receiver domain AMD08_RS15305 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS15310 PF07730 Histidine kinase AMD08_RS15320 PF00583 Acetyltransferase (GNAT) family AMD08_RS15325 PF03775 Septum formation inhibitor MinC, C-terminal domain AMD08_RS15325 PF05209 Septum formation inhibitor MinC, N-terminal domain AMD08_RS15330 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD08_RS15335 PF03776 Septum formation topological specificity factor MinE AMD08_RS15345 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS15345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS15350 PF00072 Response regulator receiver domain AMD08_RS15350 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS15355 PF13231 AMD08_RS15355 AMD08_RS15360 PF01569 PAP2 superfamily AMD08_RS15365 PF00884 Sulfatase AMD08_RS15365 PF08019 AMD08_RS15365 AMD08_RS15370 PF01401 Angiotensin-converting enzyme AMD08_RS15380 PF07690 Major Facilitator Superfamily AMD08_RS15385 PF02347 Glycine cleavage system P-protein AMD08_RS15390 PF00135 Carboxylesterase family AMD08_RS15395 PF00248 Aldo/keto reductase family AMD08_RS15400 PF00199 Catalase AMD08_RS15400 PF06628 Catalase-related immune-responsive AMD08_RS15410 PF14412 AMD08_RS15410 AMD08_RS15415 PF07791 AMD08_RS15415 AMD08_RS15420 PF08845 AMD08_RS15420 AMD08_RS15425 PF13466 STAS domain AMD08_RS15430 PF01584 CheW-like domain AMD08_RS15430 PF01627 Hpt domain AMD08_RS15430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS15430 PF02895 Signal transducing histidine kinase, homodimeric domain AMD08_RS15435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS15440 PF01584 CheW-like domain AMD08_RS15445 PF00072 Response regulator receiver domain AMD08_RS15445 PF00563 EAL domain AMD08_RS15450 PF01739 CheR methyltransferase, SAM binding domain AMD08_RS15450 PF03705 CheR methyltransferase, all-alpha domain AMD08_RS15455 PF00072 Response regulator receiver domain AMD08_RS15455 PF01339 CheB methylesterase AMD08_RS15460 PF13091 PLD-like domain AMD08_RS15465 PF01431 Peptidase family M13 AMD08_RS15465 PF05649 Peptidase family M13 AMD08_RS15475 PF00300 Histidine phosphatase superfamily (branch 1) AMD08_RS15480 PF04493 Endonuclease V AMD08_RS15490 PF02678 Pirin AMD08_RS15490 PF05726 Pirin C-terminal cupin domain AMD08_RS15500 PF02566 OsmC-like protein AMD08_RS15505 PF02678 Pirin AMD08_RS15505 PF05726 Pirin C-terminal cupin domain AMD08_RS15510 PF02554 AMD08_RS15510 AMD08_RS15510 PF13722 AMD08_RS15510 AMD08_RS15515 PF04328 AMD08_RS15515 AMD08_RS15520 PF13419 Haloacid dehalogenase-like hydrolase AMD08_RS15525 PF12796 Ankyrin repeats (3 copies) AMD08_RS15530 PF11187 Protein of unknown function (DUF2974) AMD08_RS15535 PF05684 AMD08_RS15535 AMD08_RS15550 PF12804 MobA-like NTP transferase domain AMD08_RS15560 PF02625 XdhC and CoxI family AMD08_RS15560 PF13478 XdhC Rossmann domain AMD08_RS15565 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD08_RS15565 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD08_RS15570 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD08_RS15570 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD08_RS15575 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD08_RS15575 PF01799 [2Fe-2S] binding domain AMD08_RS15580 PF00107 Zinc-binding dehydrogenase AMD08_RS15580 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS15585 PF00990 GGDEF domain AMD08_RS15585 PF02743 Cache domain AMD08_RS15590 PF00436 Single-strand binding protein family AMD08_RS15595 PF00348 Polyprenyl synthetase AMD08_RS15600 PF01738 Dienelactone hydrolase family AMD08_RS15605 PF02875 Mur ligase family, glutamate ligase domain AMD08_RS15605 PF08245 Mur ligase middle domain AMD08_RS15620 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD08_RS15620 PF00696 Amino acid kinase family AMD08_RS15620 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD08_RS15625 PF02567 Phenazine biosynthesis-like protein AMD08_RS15630 PF02567 Phenazine biosynthesis-like protein AMD08_RS15635 PF05433 AMD08_RS15635 AMD08_RS15640 PF02566 OsmC-like protein AMD08_RS15645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD08_RS15645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD08_RS15650 PF03652 Uncharacterised protein family (UPF0081) AMD08_RS15655 PF02622 Uncharacterized ACR, COG1678 AMD08_RS15665 PF03352 Methyladenine glycosylase AMD08_RS15670 PF01904 Protein of unknown function DUF72 AMD08_RS15675 PF03211 Pectate lyase AMD08_RS15680 PF00437 Type II/IV secretion system protein AMD08_RS15685 PF00437 Type II/IV secretion system protein AMD08_RS15690 PF01168 Alanine racemase, N-terminal domain AMD08_RS15695 PF03807 NADP oxidoreductase coenzyme F420-dependent AMD08_RS15695 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMD08_RS15700 PF00216 Bacterial DNA-binding protein AMD08_RS15705 PF01551 Peptidase family M23 AMD08_RS15710 PF12977 Domain of Unknown Function with PDB structure (DUF3861) AMD08_RS15720 PF07273 Protein of unknown function (DUF1439) AMD08_RS15725 PF01965 DJ-1/PfpI family AMD08_RS15730 PF00856 SET domain AMD08_RS15735 PF02082 Transcriptional regulator AMD08_RS15740 PF01458 Uncharacterized protein family (UPF0051) AMD08_RS15745 PF00005 ABC transporter AMD08_RS15750 PF01458 Uncharacterized protein family (UPF0051) AMD08_RS15755 PF00266 Aminotransferase class-V AMD08_RS15760 PF13673 Acetyltransferase (GNAT) domain AMD08_RS15765 PF00355 Rieske [2Fe-2S] domain AMD08_RS15770 PF00593 TonB dependent receptor AMD08_RS15770 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS15775 PF13640 2OG-Fe(II) oxygenase superfamily AMD08_RS15780 PF08238 Sel1 repeat AMD08_RS15785 PF16357 AMD08_RS15785 AMD08_RS15790 PF10029 AMD08_RS15790 AMD08_RS15795 PF10670 AMD08_RS15795 AMD08_RS15800 PF02424 ApbE family AMD08_RS15805 PF00175 Oxidoreductase NAD-binding domain AMD08_RS15805 PF00258 Flavodoxin AMD08_RS15810 PF13202 EF hand AMD08_RS15810 PF13499 EF-hand domain pair AMD08_RS15815 PF05962 HutD AMD08_RS15820 PF12836 Helix-hairpin-helix motif AMD08_RS15825 PF01546 Peptidase family M20/M25/M40 AMD08_RS15825 PF07687 Peptidase dimerisation domain AMD08_RS15830 PF04226 AMD08_RS15830 AMD08_RS15835 PF01636 Phosphotransferase enzyme family AMD08_RS15840 PF00483 Nucleotidyl transferase AMD08_RS15845 PF00308 Bacterial dnaA protein AMD08_RS15850 PF01594 AMD08_RS15850 AMD08_RS15855 PF09839 AMD08_RS15855 AMD08_RS15860 PF00586 AIR synthase related protein, N-terminal domain AMD08_RS15860 PF02769 AIR synthase related protein, C-terminal domain AMD08_RS15870 PF00551 Formyl transferase AMD08_RS15875 PF11306 Protein of unknown function (DUF3108) AMD08_RS15880 PF11306 Protein of unknown function (DUF3108) AMD08_RS15890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD08_RS15895 PF01722 BolA-like protein AMD08_RS15900 PF00571 CBS domain AMD08_RS15900 PF01380 SIS domain AMD08_RS15905 PF08282 haloacid dehalogenase-like hydrolase AMD08_RS15910 PF06835 Lipopolysaccharide-assembly, LptC-related AMD08_RS15915 PF03968 OstA-like protein AMD08_RS15920 PF00005 ABC transporter AMD08_RS15920 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMD08_RS15925 PF00309 AMD08_RS15925 AMD08_RS15925 PF04552 Sigma-54, DNA binding domain AMD08_RS15925 PF04963 Sigma-54 factor, core binding domain AMD08_RS15930 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD08_RS15935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD08_RS15940 PF02603 HPr Serine kinase N terminus AMD08_RS15940 PF07475 HPr Serine kinase C-terminal domain AMD08_RS15945 PF03668 AMD08_RS15945 AMD08_RS15950 PF03610 PTS system fructose IIA component AMD08_RS15955 PF00381 PTS HPr component phosphorylation site AMD08_RS15960 PF00391 PEP-utilising enzyme, mobile domain AMD08_RS15960 PF02896 PEP-utilising enzyme, TIM barrel domain AMD08_RS15960 PF05524 PEP-utilising enzyme, N-terminal AMD08_RS15965 PF00571 CBS domain AMD08_RS15965 PF01769 Divalent cation transporter AMD08_RS15965 PF03448 MgtE intracellular N domain AMD08_RS15970 PF00326 Prolyl oligopeptidase family AMD08_RS15975 PF02322 AMD08_RS15975 AMD08_RS15980 PF01654 AMD08_RS15980 AMD08_RS15985 PF01244 Membrane dipeptidase (Peptidase family M19) AMD08_RS15990 PF00324 Amino acid permease AMD08_RS15995 PF00544 Pectate lyase AMD08_RS16000 PF00561 alpha/beta hydrolase fold AMD08_RS16010 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS16010 PF03472 Autoinducer binding domain AMD08_RS16015 PF13520 Amino acid permease AMD08_RS16020 PF01764 Lipase (class 3) AMD08_RS16025 PF13365 Trypsin-like peptidase domain AMD08_RS16035 PF12706 Beta-lactamase superfamily domain AMD08_RS16040 PF04820 Tryptophan halogenase AMD08_RS16045 PF13621 Cupin-like domain AMD08_RS16050 PF07277 AMD08_RS16050 AMD08_RS16055 PF00593 TonB dependent receptor AMD08_RS16055 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16065 PF00376 MerR family regulatory protein AMD08_RS16065 PF09278 MerR, DNA binding AMD08_RS16070 PF07690 Major Facilitator Superfamily AMD08_RS16080 PF03738 Glutathionylspermidine synthase preATP-grasp AMD08_RS16085 PF06693 AMD08_RS16085 AMD08_RS16090 PF03994 AMD08_RS16090 AMD08_RS16095 PF10679 AMD08_RS16095 AMD08_RS16100 PF07885 Ion channel AMD08_RS16105 PF04012 AMD08_RS16105 AMD08_RS16110 PF09938 AMD08_RS16110 AMD08_RS16115 PF01243 Pyridoxamine 5'-phosphate oxidase AMD08_RS16115 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMD08_RS16120 PF01202 Shikimate kinase AMD08_RS16125 PF01761 3-dehydroquinate synthase AMD08_RS16135 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMD08_RS16140 PF11747 AMD08_RS16140 AMD08_RS16145 PF11747 AMD08_RS16145 AMD08_RS16150 PF11747 AMD08_RS16150 AMD08_RS16155 PF11747 AMD08_RS16155 AMD08_RS16165 PF11747 AMD08_RS16165 AMD08_RS16170 PF11747 AMD08_RS16170 AMD08_RS16190 PF08924 Domain of unknown function (DUF1906) AMD08_RS16205 PF12833 Helix-turn-helix domain AMD08_RS16205 PF14532 Sigma-54 interaction domain AMD08_RS16210 PF07690 Major Facilitator Superfamily AMD08_RS16215 PF00072 Response regulator receiver domain AMD08_RS16215 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS16215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS16215 PF07494 Two component regulator propeller AMD08_RS16215 PF07495 Y_Y_Y domain AMD08_RS16220 PF00072 Response regulator receiver domain AMD08_RS16220 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS16220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS16220 PF07494 Two component regulator propeller AMD08_RS16220 PF07495 Y_Y_Y domain AMD08_RS16230 PF00072 Response regulator receiver domain AMD08_RS16230 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS16230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS16230 PF07494 Two component regulator propeller AMD08_RS16230 PF07495 Y_Y_Y domain AMD08_RS16235 PF04264 YceI-like domain AMD08_RS16240 PF01292 Prokaryotic cytochrome b561 AMD08_RS16245 PF04264 YceI-like domain AMD08_RS16250 PF05768 Glutaredoxin-like domain (DUF836) AMD08_RS16255 PF03313 AMD08_RS16255 AMD08_RS16255 PF03315 Serine dehydratase beta chain AMD08_RS16260 PF00561 alpha/beta hydrolase fold AMD08_RS16265 PF00742 Homoserine dehydrogenase AMD08_RS16265 PF03447 Homoserine dehydrogenase, NAD binding domain AMD08_RS16270 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD08_RS16275 PF00561 alpha/beta hydrolase fold AMD08_RS16280 PF01551 Peptidase family M23 AMD08_RS16285 PF00009 Elongation factor Tu GTP binding domain AMD08_RS16285 PF16658 AMD08_RS16285 AMD08_RS16290 PF03006 AMD08_RS16290 AMD08_RS16295 PF05170 AMD08_RS16295 AMD08_RS16300 PF00571 CBS domain AMD08_RS16305 PF00535 Glycosyl transferase family 2 AMD08_RS16310 PF00912 Transglycosylase AMD08_RS16315 PF01430 Hsp33 protein AMD08_RS16325 PF00593 TonB dependent receptor AMD08_RS16325 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16335 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS16340 PF12146 Putative lysophospholipase AMD08_RS16345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD08_RS16345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD08_RS16345 PF09317 AMD08_RS16345 AMD08_RS16350 PF06993 AMD08_RS16350 AMD08_RS16355 PF07690 Major Facilitator Superfamily AMD08_RS16360 PF00144 Beta-lactamase AMD08_RS16370 PF01597 Glycine cleavage H-protein AMD08_RS16375 PF01571 Aminomethyltransferase folate-binding domain AMD08_RS16375 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD08_RS16380 PF01957 NfeD-like C-terminal, partner-binding AMD08_RS16385 PF16200 AMD08_RS16385 AMD08_RS16390 PF02694 AMD08_RS16390 AMD08_RS16395 PF03819 MazG nucleotide pyrophosphohydrolase domain AMD08_RS16400 PF00459 Inositol monophosphatase family AMD08_RS16405 PF00293 NUDIX domain AMD08_RS16410 PF00202 Aminotransferase class-III AMD08_RS16415 PF04452 RNA methyltransferase AMD08_RS16420 PF02685 Glucokinase AMD08_RS16425 PF00593 TonB dependent receptor AMD08_RS16425 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16430 PF01120 Alpha-L-fucosidase AMD08_RS16430 PF16757 AMD08_RS16430 AMD08_RS16435 PF00704 Glycosyl hydrolases family 18 AMD08_RS16440 PF00728 Glycosyl hydrolase family 20, catalytic domain AMD08_RS16440 PF02838 Glycosyl hydrolase family 20, domain 2 AMD08_RS16440 PF13290 AMD08_RS16440 AMD08_RS16445 PF00703 Glycosyl hydrolases family 2 AMD08_RS16450 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD08_RS16450 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD08_RS16450 PF07691 PA14 domain AMD08_RS16450 PF14310 Fibronectin type III-like domain AMD08_RS16455 PF00593 TonB dependent receptor AMD08_RS16455 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16455 PF13620 Carboxypeptidase regulatory-like domain AMD08_RS16460 PF01301 Glycosyl hydrolases family 35 AMD08_RS16465 PF13520 Amino acid permease AMD08_RS16470 PF00294 pfkB family carbohydrate kinase AMD08_RS16475 PF02056 Family 4 glycosyl hydrolase AMD08_RS16475 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMD08_RS16480 PF06824 Protein of unknown function (DUF1237) AMD08_RS16485 PF07971 Glycosyl hydrolase family 92 AMD08_RS16490 PF01301 Glycosyl hydrolases family 35 AMD08_RS16505 PF11747 AMD08_RS16505 AMD08_RS16510 PF13088 BNR repeat-like domain AMD08_RS16515 PF13855 Leucine rich repeat AMD08_RS16520 PF03932 CutC family AMD08_RS16525 PF01112 Asparaginase AMD08_RS16535 PF13302 Acetyltransferase (GNAT) domain AMD08_RS16540 PF01584 CheW-like domain AMD08_RS16545 PF01339 CheB methylesterase AMD08_RS16550 PF00072 Response regulator receiver domain AMD08_RS16550 PF01584 CheW-like domain AMD08_RS16550 PF01627 Hpt domain AMD08_RS16550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS16550 PF02895 Signal transducing histidine kinase, homodimeric domain AMD08_RS16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS16560 PF01584 CheW-like domain AMD08_RS16565 PF00072 Response regulator receiver domain AMD08_RS16570 PF00072 Response regulator receiver domain AMD08_RS16575 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMD08_RS16575 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMD08_RS16580 PF03544 Gram-negative bacterial TonB protein C-terminal AMD08_RS16585 PF03747 ADP-ribosylglycohydrolase AMD08_RS16590 PF00814 Glycoprotease family AMD08_RS16595 PF00270 DEAD/DEAH box helicase AMD08_RS16595 PF13307 Helicase C-terminal domain AMD08_RS16605 PF00905 Penicillin binding protein transpeptidase domain AMD08_RS16605 PF00912 Transglycosylase AMD08_RS16605 PF14814 Bifunctional transglycosylase second domain AMD08_RS16610 PF00535 Glycosyl transferase family 2 AMD08_RS16610 PF13692 Glycosyl transferases group 1 AMD08_RS16620 PF02824 TGS domain AMD08_RS16620 PF04607 Region found in RelA / SpoT proteins AMD08_RS16620 PF13291 ACT domain AMD08_RS16620 PF13328 HD domain AMD08_RS16625 PF12706 Beta-lactamase superfamily domain AMD08_RS16630 PF03070 TENA/THI-4/PQQC family AMD08_RS16635 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMD08_RS16640 PF04055 Radical SAM superfamily AMD08_RS16640 PF13186 Iron-sulfur cluster-binding domain AMD08_RS16640 PF13353 4Fe-4S single cluster domain AMD08_RS16650 PF10142 PhoPQ-activated pathogenicity-related protein AMD08_RS16655 PF02685 Glucokinase AMD08_RS16660 PF00593 TonB dependent receptor AMD08_RS16660 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16665 PF00270 DEAD/DEAH box helicase AMD08_RS16665 PF00271 Helicase conserved C-terminal domain AMD08_RS16665 PF04408 Helicase associated domain (HA2) AMD08_RS16665 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMD08_RS16665 PF11898 AMD08_RS16665 AMD08_RS16670 PF00210 Ferritin-like domain AMD08_RS16675 PF00270 DEAD/DEAH box helicase AMD08_RS16675 PF00271 Helicase conserved C-terminal domain AMD08_RS16675 PF00570 HRDC domain AMD08_RS16675 PF09382 RQC domain AMD08_RS16675 PF16124 AMD08_RS16675 AMD08_RS16685 PF00072 Response regulator receiver domain AMD08_RS16695 PF01479 S4 domain AMD08_RS16710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS16710 PF00672 HAMP domain AMD08_RS16710 PF12729 AMD08_RS16710 AMD08_RS16715 PF01810 AMD08_RS16715 AMD08_RS16720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS16720 PF03466 LysR substrate binding domain AMD08_RS16725 PF00072 Response regulator receiver domain AMD08_RS16730 PF07536 AMD08_RS16730 AMD08_RS16730 PF08448 PAS fold AMD08_RS16735 PF06508 Queuosine biosynthesis protein QueC AMD08_RS16745 PF04055 Radical SAM superfamily AMD08_RS16745 PF13394 4Fe-4S single cluster domain AMD08_RS16750 PF13525 Outer membrane lipoprotein AMD08_RS16750 PF16331 AMD08_RS16750 AMD08_RS16755 PF00691 OmpA family AMD08_RS16760 PF04052 TolB amino-terminal domain AMD08_RS16760 PF07676 WD40-like Beta Propeller Repeat AMD08_RS16765 PF13103 TonB C terminal AMD08_RS16770 PF02472 Biopolymer transport protein ExbD/TolR AMD08_RS16775 PF01618 AMD08_RS16775 AMD08_RS16780 PF03061 Thioesterase superfamily AMD08_RS16785 PF05491 Holliday junction DNA helicase ruvB C-terminus AMD08_RS16785 PF05496 Holliday junction DNA helicase ruvB N-terminus AMD08_RS16795 PF02705 AMD08_RS16795 AMD08_RS16800 PF01330 RuvA N terminal domain AMD08_RS16800 PF07499 RuvA, C-terminal domain AMD08_RS16800 PF14520 Helix-hairpin-helix domain AMD08_RS16805 PF02075 Crossover junction endodeoxyribonuclease RuvC AMD08_RS16810 PF01709 Transcriptional regulator AMD08_RS16815 PF12697 Alpha/beta hydrolase family AMD08_RS16820 PF13673 Acetyltransferase (GNAT) domain AMD08_RS16825 PF00152 tRNA synthetases class II (D, K and N) AMD08_RS16825 PF01336 OB-fold nucleic acid binding domain AMD08_RS16825 PF02938 GAD domain AMD08_RS16830 PF11218 AMD08_RS16830 AMD08_RS16835 PF09723 AMD08_RS16835 AMD08_RS16840 PF07690 Major Facilitator Superfamily AMD08_RS16845 PF00593 TonB dependent receptor AMD08_RS16845 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16860 PF13354 Beta-lactamase enzyme family AMD08_RS16865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS16865 PF03466 LysR substrate binding domain AMD08_RS16870 PF14317 AMD08_RS16870 AMD08_RS16875 PF00005 ABC transporter AMD08_RS16875 PF12848 ABC transporter AMD08_RS16875 PF16326 AMD08_RS16875 AMD08_RS16880 PF00593 TonB dependent receptor AMD08_RS16880 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS16895 PF00593 TonB dependent receptor AMD08_RS16895 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16900 PF00593 TonB dependent receptor AMD08_RS16900 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16905 PF00067 Cytochrome P450 AMD08_RS16910 PF00999 Sodium/hydrogen exchanger family AMD08_RS16910 PF02254 TrkA-N domain AMD08_RS16930 PF03328 HpcH/HpaI aldolase/citrate lyase family AMD08_RS16935 PF00593 TonB dependent receptor AMD08_RS16935 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS16940 PF02655 ATP-grasp domain AMD08_RS16945 PF04183 IucA / IucC family AMD08_RS16945 PF06276 Ferric iron reductase FhuF-like transporter AMD08_RS16950 PF07690 Major Facilitator Superfamily AMD08_RS16955 PF04183 IucA / IucC family AMD08_RS16955 PF06276 Ferric iron reductase FhuF-like transporter AMD08_RS16960 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD08_RS16960 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD08_RS16975 PF02654 AMD08_RS16975 AMD08_RS16980 PF00300 Histidine phosphatase superfamily (branch 1) AMD08_RS16985 PF02277 Phosphoribosyltransferase AMD08_RS16990 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMD08_RS16995 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD08_RS16995 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMD08_RS17000 PF00155 Aminotransferase class I and II AMD08_RS17005 PF03186 AMD08_RS17005 AMD08_RS17010 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMD08_RS17010 PF12557 Cob(I)alamin adenosyltransferase N terminal AMD08_RS17025 PF00593 TonB dependent receptor AMD08_RS17025 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS17030 PF00004 ATPase family associated with various cellular activities (AAA) AMD08_RS17030 PF02861 Clp amino terminal domain AMD08_RS17030 PF07724 AAA domain (Cdc48 subfamily) AMD08_RS17030 PF10431 C-terminal, D2-small domain, of ClpB protein AMD08_RS17035 PF00005 ABC transporter AMD08_RS17040 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS17045 PF09084 NMT1/THI5 like AMD08_RS17050 PF00248 Aldo/keto reductase family AMD08_RS17055 PF00296 Luciferase-like monooxygenase AMD08_RS17060 PF00593 TonB dependent receptor AMD08_RS17060 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS17065 PF01541 GIY-YIG catalytic domain AMD08_RS17070 PF14497 Glutathione S-transferase, C-terminal domain AMD08_RS17075 PF11219 AMD08_RS17075 AMD08_RS17080 PF07007 Protein of unknown function (DUF1311) AMD08_RS17095 PF12098 AMD08_RS17095 AMD08_RS17100 PF00593 TonB dependent receptor AMD08_RS17100 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS17105 PF02358 Trehalose-phosphatase AMD08_RS17110 PF00723 Glycosyl hydrolases family 15 AMD08_RS17115 PF00982 Glycosyltransferase family 20 AMD08_RS17120 PF01011 PQQ enzyme repeat AMD08_RS17120 PF13360 PQQ-like domain AMD08_RS17125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS17130 PF04134 AMD08_RS17130 AMD08_RS17135 PF13761 AMD08_RS17135 AMD08_RS17140 PF02578 Multi-copper polyphenol oxidoreductase laccase AMD08_RS17145 PF00849 RNA pseudouridylate synthase AMD08_RS17150 PF13525 Outer membrane lipoprotein AMD08_RS17160 PF00795 Carbon-nitrogen hydrolase AMD08_RS17160 PF02540 NAD synthase AMD08_RS17165 PF04480 Protein of unknown function (DUF559) AMD08_RS17170 PF01527 Transposase AMD08_RS17180 PF13333 AMD08_RS17180 AMD08_RS17190 PF01471 Putative peptidoglycan binding domain AMD08_RS17190 PF13406 Transglycosylase SLT domain AMD08_RS17195 PF01526 AMD08_RS17195 AMD08_RS17195 PF13700 AMD08_RS17195 AMD08_RS17200 PF00589 Phage integrase family AMD08_RS17230 PF01695 IstB-like ATP binding protein AMD08_RS17250 PF01527 Transposase AMD08_RS17255 PF00665 Integrase core domain AMD08_RS17255 PF13276 AMD08_RS17255 AMD08_RS17280 PF12811 AMD08_RS17280 AMD08_RS17285 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD08_RS17290 PF02627 Carboxymuconolactone decarboxylase family AMD08_RS17295 PF00462 Glutaredoxin AMD08_RS17300 PF01435 Peptidase family M48 AMD08_RS17305 PF00072 Response regulator receiver domain AMD08_RS17305 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS17310 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS17310 PF11808 AMD08_RS17310 AMD08_RS17315 PF02503 Polyphosphate kinase middle domain AMD08_RS17315 PF13089 Polyphosphate kinase N-terminal domain AMD08_RS17315 PF13090 Polyphosphate kinase C-terminal domain AMD08_RS17320 PF02541 Ppx/GppA phosphatase family AMD08_RS17325 PF00534 Glycosyl transferases group 1 AMD08_RS17325 PF13439 Glycosyltransferase Family 4 AMD08_RS17330 PF01569 PAP2 superfamily AMD08_RS17335 PF00149 Calcineurin-like phosphoesterase AMD08_RS17345 PF13688 Metallo-peptidase family M12 AMD08_RS17360 PF13522 Glutamine amidotransferase domain AMD08_RS17365 PF02674 AMD08_RS17365 AMD08_RS17370 PF05036 Sporulation related domain AMD08_RS17375 PF08245 Mur ligase middle domain AMD08_RS17380 PF00300 Histidine phosphatase superfamily (branch 1) AMD08_RS17385 PF10459 Peptidase S46 AMD08_RS17390 PF10459 Peptidase S46 AMD08_RS17395 PF04185 Phosphoesterase family AMD08_RS17395 PF05506 AMD08_RS17395 AMD08_RS17400 PF00593 TonB dependent receptor AMD08_RS17400 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS17405 PF00107 Zinc-binding dehydrogenase AMD08_RS17405 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS17410 PF09694 AMD08_RS17410 AMD08_RS17415 PF00005 ABC transporter AMD08_RS17415 PF12857 AMD08_RS17415 AMD08_RS17420 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS17425 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS17430 PF13531 Bacterial extracellular solute-binding protein AMD08_RS17435 PF00155 Aminotransferase class I and II AMD08_RS17445 PF00849 RNA pseudouridylate synthase AMD08_RS17445 PF01479 S4 domain AMD08_RS17455 PF00691 OmpA family AMD08_RS17455 PF13505 Outer membrane protein beta-barrel domain AMD08_RS17465 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS17465 PF13602 Zinc-binding dehydrogenase AMD08_RS17470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD08_RS17470 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS17475 PF07486 Cell Wall Hydrolase AMD08_RS17480 PF00043 Glutathione S-transferase, C-terminal domain AMD08_RS17480 PF02798 Glutathione S-transferase, N-terminal domain AMD08_RS17485 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD08_RS17485 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD08_RS17490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD08_RS17495 PF00009 Elongation factor Tu GTP binding domain AMD08_RS17495 PF00679 Elongation factor G C-terminus AMD08_RS17495 PF03144 Elongation factor Tu domain 2 AMD08_RS17500 PF09900 AMD08_RS17500 AMD08_RS17505 PF01425 Amidase AMD08_RS17510 PF00924 Mechanosensitive ion channel AMD08_RS17515 PF01474 Class-II DAHP synthetase family AMD08_RS17520 PF00593 TonB dependent receptor AMD08_RS17520 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS17530 PF02600 Disulfide bond formation protein DsbB AMD08_RS17535 PF01196 Ribosomal protein L17 AMD08_RS17540 PF01000 RNA polymerase Rpb3/RpoA insert domain AMD08_RS17540 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMD08_RS17540 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMD08_RS17545 PF00163 Ribosomal protein S4/S9 N-terminal domain AMD08_RS17545 PF01479 S4 domain AMD08_RS17550 PF00411 Ribosomal protein S11 AMD08_RS17555 PF00416 Ribosomal protein S13/S18 AMD08_RS17560 PF00344 SecY translocase AMD08_RS17565 PF00828 Ribosomal protein L18e/L15 AMD08_RS17570 PF00327 Ribosomal protein L30p/L7e AMD08_RS17575 PF00333 Ribosomal protein S5, N-terminal domain AMD08_RS17575 PF03719 Ribosomal protein S5, C-terminal domain AMD08_RS17580 PF00861 Ribosomal L18p/L5e family AMD08_RS17585 PF00347 Ribosomal protein L6 AMD08_RS17590 PF00410 Ribosomal protein S8 AMD08_RS17595 PF00253 Ribosomal protein S14p/S29e AMD08_RS17600 PF00281 Ribosomal protein L5 AMD08_RS17600 PF00673 ribosomal L5P family C-terminus AMD08_RS17605 PF00467 KOW motif AMD08_RS17605 PF17136 AMD08_RS17605 AMD08_RS17610 PF00238 Ribosomal protein L14p/L23e AMD08_RS17615 PF00366 Ribosomal protein S17 AMD08_RS17620 PF00831 Ribosomal L29 protein AMD08_RS17625 PF00252 Ribosomal protein L16p/L10e AMD08_RS17630 PF00189 Ribosomal protein S3, C-terminal domain AMD08_RS17630 PF07650 KH domain AMD08_RS17635 PF00237 Ribosomal protein L22p/L17e AMD08_RS17640 PF00203 Ribosomal protein S19 AMD08_RS17645 PF00181 Ribosomal Proteins L2, RNA binding domain AMD08_RS17645 PF03947 Ribosomal Proteins L2, C-terminal domain AMD08_RS17650 PF00276 Ribosomal protein L23 AMD08_RS17655 PF00573 Ribosomal protein L4/L1 family AMD08_RS17660 PF00297 Ribosomal protein L3 AMD08_RS17665 PF00338 Ribosomal protein S10p/S20e AMD08_RS17670 PF00009 Elongation factor Tu GTP binding domain AMD08_RS17670 PF03143 Elongation factor Tu C-terminal domain AMD08_RS17670 PF03144 Elongation factor Tu domain 2 AMD08_RS17675 PF00009 Elongation factor Tu GTP binding domain AMD08_RS17675 PF00679 Elongation factor G C-terminus AMD08_RS17675 PF03144 Elongation factor Tu domain 2 AMD08_RS17675 PF03764 Elongation factor G, domain IV AMD08_RS17675 PF14492 Elongation Factor G, domain II AMD08_RS17680 PF00177 Ribosomal protein S7p/S5e AMD08_RS17685 PF00164 Ribosomal protein S12/S23 AMD08_RS17690 PF00623 RNA polymerase Rpb1, domain 2 AMD08_RS17690 PF04983 RNA polymerase Rpb1, domain 3 AMD08_RS17690 PF04997 RNA polymerase Rpb1, domain 1 AMD08_RS17690 PF04998 RNA polymerase Rpb1, domain 5 AMD08_RS17690 PF05000 RNA polymerase Rpb1, domain 4 AMD08_RS17695 PF00562 RNA polymerase Rpb2, domain 6 AMD08_RS17695 PF04560 RNA polymerase Rpb2, domain 7 AMD08_RS17695 PF04561 RNA polymerase Rpb2, domain 2 AMD08_RS17695 PF04563 RNA polymerase beta subunit AMD08_RS17695 PF04565 RNA polymerase Rpb2, domain 3 AMD08_RS17695 PF10385 RNA polymerase beta subunit external 1 domain AMD08_RS17700 PF00542 Ribosomal protein L7/L12 C-terminal domain AMD08_RS17700 PF16320 AMD08_RS17700 AMD08_RS17705 PF00466 Ribosomal protein L10 AMD08_RS17710 PF00687 Ribosomal protein L1p/L10e family AMD08_RS17715 PF00298 Ribosomal protein L11, RNA binding domain AMD08_RS17715 PF03946 Ribosomal protein L11, N-terminal domain AMD08_RS17720 PF00467 KOW motif AMD08_RS17720 PF02357 Transcription termination factor nusG AMD08_RS17725 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMD08_RS17735 PF00009 Elongation factor Tu GTP binding domain AMD08_RS17735 PF03143 Elongation factor Tu C-terminal domain AMD08_RS17735 PF03144 Elongation factor Tu domain 2 AMD08_RS17755 PF01926 50S ribosome-binding GTPase AMD08_RS17755 PF06071 Protein of unknown function (DUF933) AMD08_RS17760 PF01195 Peptidyl-tRNA hydrolase AMD08_RS17765 PF01386 Ribosomal L25p family AMD08_RS17765 PF14693 Ribosomal protein TL5, C-terminal domain AMD08_RS17770 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD08_RS17770 PF14572 Phosphoribosyl synthetase-associated domain AMD08_RS17780 PF00288 GHMP kinases N terminal domain AMD08_RS17780 PF08544 GHMP kinases C terminal AMD08_RS17785 PF03550 Outer membrane lipoprotein LolB AMD08_RS17790 PF13429 Tetratricopeptide repeat AMD08_RS17795 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMD08_RS17795 PF01488 Shikimate / quinate 5-dehydrogenase AMD08_RS17795 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMD08_RS17800 PF00472 RF-1 domain AMD08_RS17800 PF03462 PCRF domain AMD08_RS17805 PF13844 Glycosyl transferase family 41 AMD08_RS17805 PF14559 Tetratricopeptide repeat AMD08_RS17810 PF00994 Probable molybdopterin binding domain AMD08_RS17815 PF03976 Polyphosphate kinase 2 (PPK2) AMD08_RS17825 PF00708 Acylphosphatase AMD08_RS17830 PF00578 AhpC/TSA family AMD08_RS17835 PF03631 AMD08_RS17835 AMD08_RS17840 PF03358 NADPH-dependent FMN reductase AMD08_RS17845 PF09842 AMD08_RS17845 AMD08_RS17855 PF00710 Asparaginase AMD08_RS17860 PF04073 Aminoacyl-tRNA editing domain AMD08_RS17865 PF00082 Subtilase family AMD08_RS17865 PF04151 Bacterial pre-peptidase C-terminal domain AMD08_RS17870 PF00082 Subtilase family AMD08_RS17875 PF00082 Subtilase family AMD08_RS17875 PF04151 Bacterial pre-peptidase C-terminal domain AMD08_RS17880 PF01063 Aminotransferase class IV AMD08_RS17885 PF01883 Domain of unknown function DUF59 AMD08_RS17895 PF02233 NAD(P) transhydrogenase beta subunit AMD08_RS17900 PF12769 Domain of unknown function (DUF3814) AMD08_RS17905 PF04542 Sigma-70 region 2 AMD08_RS17905 PF08281 Sigma-70, region 4 AMD08_RS17915 PF11304 AMD08_RS17915 AMD08_RS17920 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMD08_RS17920 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMD08_RS17925 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS17925 PF13305 WHG domain AMD08_RS17930 PF12146 Putative lysophospholipase AMD08_RS17935 PF07793 AMD08_RS17935 AMD08_RS17940 PF07793 AMD08_RS17940 AMD08_RS17945 PF00881 Nitroreductase family AMD08_RS17950 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD08_RS17950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD08_RS17955 PF00293 NUDIX domain AMD08_RS17960 PF05013 N-formylglutamate amidohydrolase AMD08_RS17965 PF00561 alpha/beta hydrolase fold AMD08_RS17970 PF05175 Methyltransferase small domain AMD08_RS17975 PF00578 AhpC/TSA family AMD08_RS17975 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD08_RS17980 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS17980 PF13192 Thioredoxin domain AMD08_RS17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS17985 PF03466 LysR substrate binding domain AMD08_RS17990 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD08_RS17990 PF14760 Rnk N-terminus AMD08_RS17995 PF00923 Transaldolase AMD08_RS18000 PF01965 DJ-1/PfpI family AMD08_RS18005 PF01625 Peptide methionine sulfoxide reductase AMD08_RS18010 PF08332 Calcium/calmodulin dependent protein kinase II Association AMD08_RS18015 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS18020 PF00072 Response regulator receiver domain AMD08_RS18020 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS18020 PF00672 HAMP domain AMD08_RS18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS18020 PF05227 CHASE3 domain AMD08_RS18025 PF00072 Response regulator receiver domain AMD08_RS18030 PF09413 Domain of unknown function (DUF2007) AMD08_RS18035 PF13409 Glutathione S-transferase, N-terminal domain AMD08_RS18040 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD08_RS18040 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMD08_RS18070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD08_RS18075 PF01728 FtsJ-like methyltransferase AMD08_RS18080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD08_RS18085 PF08450 SMP-30/Gluconolaconase/LRE-like region AMD08_RS18095 PF13202 EF hand AMD08_RS18100 PF12802 MarR family AMD08_RS18105 PF00378 Enoyl-CoA hydratase/isomerase family AMD08_RS18110 PF00171 Aldehyde dehydrogenase family AMD08_RS18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS18120 PF03466 LysR substrate binding domain AMD08_RS18125 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AMD08_RS18130 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD08_RS18135 PF00392 Bacterial regulatory proteins, gntR family AMD08_RS18135 PF07729 FCD domain AMD08_RS18140 PF13557 AMD08_RS18140 AMD08_RS18145 PF13577 SnoaL-like domain AMD08_RS18150 PF12697 Alpha/beta hydrolase family AMD08_RS18155 PF01494 FAD binding domain AMD08_RS18160 PF01494 FAD binding domain AMD08_RS18170 PF01923 Cobalamin adenosyltransferase AMD08_RS18175 PF00850 Histone deacetylase domain AMD08_RS18180 PF00850 Histone deacetylase domain AMD08_RS18185 PF03968 OstA-like protein AMD08_RS18185 PF04453 Organic solvent tolerance protein AMD08_RS18190 PF00639 PPIC-type PPIASE domain AMD08_RS18190 PF09312 SurA N-terminal domain AMD08_RS18190 PF13616 PPIC-type PPIASE domain AMD08_RS18195 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMD08_RS18200 PF00398 Ribosomal RNA adenine dimethylase AMD08_RS18205 PF04379 Protein of unknown function (DUF525) AMD08_RS18210 PF00149 Calcineurin-like phosphoesterase AMD08_RS18215 PF00005 ABC transporter AMD08_RS18215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD08_RS18220 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS18225 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS18230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD08_RS18235 PF00296 Luciferase-like monooxygenase AMD08_RS18240 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD08_RS18250 PF00593 TonB dependent receptor AMD08_RS18250 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS18255 PF03358 NADPH-dependent FMN reductase AMD08_RS18260 PF00296 Luciferase-like monooxygenase AMD08_RS18265 PF09084 NMT1/THI5 like AMD08_RS18270 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS18275 PF00005 ABC transporter AMD08_RS18280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD08_RS18280 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD08_RS18285 PF00158 Sigma-54 interaction domain AMD08_RS18290 PF00186 Dihydrofolate reductase AMD08_RS18300 PF00303 Thymidylate synthase AMD08_RS18305 PF01790 AMD08_RS18305 AMD08_RS18310 PF04536 TLP18 AMD08_RS18315 PF04536 TLP18 AMD08_RS18320 PF04011 LemA family AMD08_RS18325 PF01219 Prokaryotic diacylglycerol kinase AMD08_RS18330 PF13472 GDSL-like Lipase/Acylhydrolase family AMD08_RS18335 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS18335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS18340 PF00072 Response regulator receiver domain AMD08_RS18340 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS18345 PF13472 GDSL-like Lipase/Acylhydrolase family AMD08_RS18350 PF00005 ABC transporter AMD08_RS18355 PF02687 AMD08_RS18355 AMD08_RS18360 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMD08_RS18365 PF13379 NMT1-like family AMD08_RS18370 PF00005 ABC transporter AMD08_RS18375 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS18380 PF04342 AMD08_RS18380 AMD08_RS18395 PF00593 TonB dependent receptor AMD08_RS18395 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS18400 PF10636 Hemin uptake protein hemP AMD08_RS18405 PF00248 Aldo/keto reductase family AMD08_RS18410 PF01773 Na+ dependent nucleoside transporter N-terminus AMD08_RS18410 PF07662 Na+ dependent nucleoside transporter C-terminus AMD08_RS18410 PF07670 Nucleoside recognition AMD08_RS18415 PF00294 pfkB family carbohydrate kinase AMD08_RS18420 PF08306 Glycosyl hydrolase family 98 AMD08_RS18420 PF08307 Glycosyl hydrolase family 98 C-terminal domain AMD08_RS18420 PF16990 AMD08_RS18420 AMD08_RS18425 PF01207 Dihydrouridine synthase (Dus) AMD08_RS18430 PF08241 Methyltransferase domain AMD08_RS18435 PF04307 AMD08_RS18435 AMD08_RS18440 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMD08_RS18440 PF02772 S-adenosylmethionine synthetase, central domain AMD08_RS18440 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMD08_RS18445 PF00328 Histidine phosphatase superfamily (branch 2) AMD08_RS18450 PF00593 TonB dependent receptor AMD08_RS18450 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS18465 PF13387 AMD08_RS18465 AMD08_RS18470 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS18475 PF00311 Phosphoenolpyruvate carboxylase AMD08_RS18480 PF00326 Prolyl oligopeptidase family AMD08_RS18485 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD08_RS18485 PF05221 S-adenosyl-L-homocysteine hydrolase AMD08_RS18490 PF13649 Methyltransferase domain AMD08_RS18495 PF00685 Sulfotransferase domain AMD08_RS18505 PF11539 Protein of unknown function (DUF3228) AMD08_RS18510 PF09831 AMD08_RS18510 AMD08_RS18520 PF00128 Alpha amylase, catalytic domain AMD08_RS18525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD08_RS18535 PF00082 Subtilase family AMD08_RS18535 PF09286 Pro-kumamolisin, activation domain AMD08_RS18540 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS18540 PF13602 Zinc-binding dehydrogenase AMD08_RS18545 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD08_RS18560 PF00293 NUDIX domain AMD08_RS18560 PF02581 Thiamine monophosphate synthase/TENI AMD08_RS18565 PF01043 SecA preprotein cross-linking domain AMD08_RS18565 PF02810 SEC-C motif AMD08_RS18565 PF07516 SecA Wing and Scaffold domain AMD08_RS18565 PF07517 SecA DEAD-like domain AMD08_RS18570 PF01551 Peptidase family M23 AMD08_RS18575 PF05258 AMD08_RS18575 AMD08_RS18580 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMD08_RS18585 PF00091 Tubulin/FtsZ family, GTPase domain AMD08_RS18585 PF12327 FtsZ family, C-terminal domain AMD08_RS18590 PF02491 SHS2 domain inserted in FTSA AMD08_RS18590 PF14450 Cell division protein FtsA AMD08_RS18595 PF03799 Cell division protein FtsQ AMD08_RS18595 PF08478 POTRA domain, FtsQ-type AMD08_RS18600 PF01820 D-ala D-ala ligase N-terminus AMD08_RS18600 PF07478 D-ala D-ala ligase C-terminus AMD08_RS18605 PF01225 Mur ligase family, catalytic domain AMD08_RS18605 PF02875 Mur ligase family, glutamate ligase domain AMD08_RS18605 PF08245 Mur ligase middle domain AMD08_RS18610 PF03033 Glycosyltransferase family 28 N-terminal domain AMD08_RS18610 PF04101 Glycosyltransferase family 28 C-terminal domain AMD08_RS18615 PF03033 Glycosyltransferase family 28 N-terminal domain AMD08_RS18615 PF04101 Glycosyltransferase family 28 C-terminal domain AMD08_RS18620 PF01098 AMD08_RS18620 AMD08_RS18625 PF00953 Glycosyl transferase family 4 AMD08_RS18630 PF01225 Mur ligase family, catalytic domain AMD08_RS18630 PF02875 Mur ligase family, glutamate ligase domain AMD08_RS18630 PF08245 Mur ligase middle domain AMD08_RS18635 PF01225 Mur ligase family, catalytic domain AMD08_RS18635 PF02875 Mur ligase family, glutamate ligase domain AMD08_RS18635 PF08245 Mur ligase middle domain AMD08_RS18640 PF00905 Penicillin binding protein transpeptidase domain AMD08_RS18640 PF03717 Penicillin-binding Protein dimerisation domain AMD08_RS18645 PF04999 AMD08_RS18645 AMD08_RS18650 PF01795 MraW methylase family AMD08_RS18655 PF02381 MraZ protein AMD08_RS18660 PF05742 AMD08_RS18660 AMD08_RS18665 PF07362 Post-segregation antitoxin CcdA AMD08_RS18670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD08_RS18675 PF04348 LppC putative lipoprotein AMD08_RS18680 PF02021 Uncharacterised protein family UPF0102 AMD08_RS18685 PF04307 AMD08_RS18685 AMD08_RS18690 PF01565 FAD binding domain AMD08_RS18690 PF02913 FAD linked oxidases, C-terminal domain AMD08_RS18695 PF07007 Protein of unknown function (DUF1311) AMD08_RS18705 PF00072 Response regulator receiver domain AMD08_RS18705 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS18710 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS18710 PF00582 Universal stress protein family AMD08_RS18710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS18710 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD08_RS18710 PF13493 Domain of unknown function (DUF4118) AMD08_RS18715 PF02669 AMD08_RS18715 AMD08_RS18720 PF00122 E1-E2 ATPase AMD08_RS18720 PF00702 haloacid dehalogenase-like hydrolase AMD08_RS18725 PF03814 AMD08_RS18725 AMD08_RS18730 PF09604 AMD08_RS18730 AMD08_RS18735 PF00646 F-box domain AMD08_RS18740 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD08_RS18740 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD08_RS18745 PF00586 AIR synthase related protein, N-terminal domain AMD08_RS18745 PF02769 AIR synthase related protein, C-terminal domain AMD08_RS18750 PF01029 NusB family AMD08_RS18755 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMD08_RS18760 PF00925 GTP cyclohydrolase II AMD08_RS18760 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMD08_RS18765 PF00677 Lumazine binding domain AMD08_RS18775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD08_RS18775 PF01872 RibD C-terminal domain AMD08_RS18780 PF00583 Acetyltransferase (GNAT) family AMD08_RS18785 PF03477 ATP cone domain AMD08_RS18790 PF00464 Serine hydroxymethyltransferase AMD08_RS18795 PF11776 Domain of unknown function (DUF3315) AMD08_RS18800 PF00005 ABC transporter AMD08_RS18800 PF12848 ABC transporter AMD08_RS18810 PF00892 EamA-like transporter family AMD08_RS18815 PF02567 Phenazine biosynthesis-like protein AMD08_RS18820 PF00155 Aminotransferase class I and II AMD08_RS18820 PF00392 Bacterial regulatory proteins, gntR family AMD08_RS18830 PF00756 Putative esterase AMD08_RS18835 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD08_RS18840 PF00107 Zinc-binding dehydrogenase AMD08_RS18840 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS18845 PF02583 Metal-sensitive transcriptional repressor AMD08_RS18855 PF00534 Glycosyl transferases group 1 AMD08_RS18860 PF00072 Response regulator receiver domain AMD08_RS18860 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS18865 PF00672 HAMP domain AMD08_RS18865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS18870 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMD08_RS18875 PF12833 Helix-turn-helix domain AMD08_RS18880 PF00753 Metallo-beta-lactamase superfamily AMD08_RS18885 PF01926 50S ribosome-binding GTPase AMD08_RS18890 PF00034 Cytochrome c AMD08_RS18895 PF13462 Thioredoxin AMD08_RS18900 PF01323 DSBA-like thioredoxin domain AMD08_RS18905 PF03372 Endonuclease/Exonuclease/phosphatase family AMD08_RS18910 PF02028 BCCT family transporter AMD08_RS18915 PF00171 Aldehyde dehydrogenase family AMD08_RS18920 PF00732 GMC oxidoreductase AMD08_RS18920 PF05199 GMC oxidoreductase AMD08_RS18925 PF01743 Poly A polymerase head domain AMD08_RS18925 PF01966 HD domain AMD08_RS18925 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD08_RS18930 PF00593 TonB dependent receptor AMD08_RS18930 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS18935 PF01979 Amidohydrolase family AMD08_RS18940 PF01380 SIS domain AMD08_RS18945 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS18945 PF13377 Periplasmic binding protein-like domain AMD08_RS18950 PF07690 Major Facilitator Superfamily AMD08_RS18955 PF00392 Bacterial regulatory proteins, gntR family AMD08_RS18955 PF07702 UTRA domain AMD08_RS18960 PF07786 AMD08_RS18960 AMD08_RS18965 PF05089 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain AMD08_RS18965 PF12971 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain AMD08_RS18965 PF12972 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain AMD08_RS18970 PF00703 Glycosyl hydrolases family 2 AMD08_RS18970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD08_RS18970 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD08_RS18970 PF16355 AMD08_RS18970 AMD08_RS18975 PF00593 TonB dependent receptor AMD08_RS18975 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS18980 PF01203 AMD08_RS18980 AMD08_RS18985 PF04612 Type II secretion system (T2SS), protein M AMD08_RS18990 PF05134 Type II secretion system (T2SS), protein L AMD08_RS18990 PF12693 GspL periplasmic domain AMD08_RS18995 PF03934 Type II secretion system (T2SS), protein K AMD08_RS19000 PF11612 Type II secretion system (T2SS), protein J AMD08_RS19000 PF13544 AMD08_RS19000 AMD08_RS19005 PF02501 Type II secretion system (T2SS), protein I AMD08_RS19005 PF13633 Prokaryotic N-terminal methylation site AMD08_RS19010 PF12019 Type II transport protein GspH AMD08_RS19015 PF08334 Type II secretion system (T2SS), protein G AMD08_RS19015 PF13544 AMD08_RS19015 AMD08_RS19020 PF00482 Type II secretion system (T2SS), protein F AMD08_RS19025 PF00437 Type II/IV secretion system protein AMD08_RS19030 PF00263 AMD08_RS19030 AMD08_RS19030 PF03958 Bacterial type II/III secretion system short domain AMD08_RS19035 PF11356 Type IV pilus biogenesis AMD08_RS19035 PF13180 PDZ domain AMD08_RS19040 PF00593 TonB dependent receptor AMD08_RS19040 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS19050 PF13640 2OG-Fe(II) oxygenase superfamily AMD08_RS19055 PF00593 TonB dependent receptor AMD08_RS19055 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS19060 PF04892 AMD08_RS19060 AMD08_RS19065 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase AMD08_RS19070 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS19075 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD08_RS19080 PF00072 Response regulator receiver domain AMD08_RS19080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS19085 PF00072 Response regulator receiver domain AMD08_RS19090 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS19090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS19090 PF05227 CHASE3 domain AMD08_RS19090 PF13188 PAS domain AMD08_RS19095 PF04972 BON domain AMD08_RS19100 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD08_RS19100 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD08_RS19105 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMD08_RS19105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD08_RS19115 PF05433 AMD08_RS19115 AMD08_RS19120 PF10001 AMD08_RS19120 AMD08_RS19125 PF01555 DNA methylase AMD08_RS19135 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD08_RS19140 PF00293 NUDIX domain AMD08_RS19140 PF01467 Cytidylyltransferase AMD08_RS19145 PF03372 Endonuclease/Exonuclease/phosphatase family AMD08_RS19150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS19150 PF03466 LysR substrate binding domain AMD08_RS19155 PF01925 AMD08_RS19155 AMD08_RS19160 PF00595 PDZ domain (Also known as DHR or GLGF) AMD08_RS19160 PF03572 Peptidase family S41 AMD08_RS19160 PF11818 AMD08_RS19160 AMD08_RS19165 PF04055 Radical SAM superfamily AMD08_RS19165 PF16881 AMD08_RS19165 AMD08_RS19170 PF03099 Biotin/lipoate A/B protein ligase family AMD08_RS19175 PF04359 Protein of unknown function (DUF493) AMD08_RS19180 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) AMD08_RS19185 PF00768 D-alanyl-D-alanine carboxypeptidase AMD08_RS19185 PF07943 Penicillin-binding protein 5, C-terminal domain AMD08_RS19195 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AMD08_RS19195 PF05036 Sporulation related domain AMD08_RS19200 PF13406 Transglycosylase SLT domain AMD08_RS19205 PF00295 Glycosyl hydrolases family 28 AMD08_RS19210 PF01098 AMD08_RS19210 AMD08_RS19215 PF00905 Penicillin binding protein transpeptidase domain AMD08_RS19215 PF03717 Penicillin-binding Protein dimerisation domain AMD08_RS19220 PF04093 AMD08_RS19220 AMD08_RS19225 PF04085 rod shape-determining protein MreC AMD08_RS19230 PF06723 MreB/Mbl protein AMD08_RS19235 PF00294 pfkB family carbohydrate kinase AMD08_RS19240 PF00158 Sigma-54 interaction domain AMD08_RS19240 PF02954 Bacterial regulatory protein, Fis family AMD08_RS19245 PF00593 TonB dependent receptor AMD08_RS19245 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS19250 PF00107 Zinc-binding dehydrogenase AMD08_RS19250 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS19255 PF10282 Lactonase, 7-bladed beta-propeller AMD08_RS19260 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD08_RS19265 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD08_RS19265 PF12796 Ankyrin repeats (3 copies) AMD08_RS19265 PF13857 Ankyrin repeats (many copies) AMD08_RS19270 PF13360 PQQ-like domain AMD08_RS19270 PF13570 PQQ-like domain AMD08_RS19275 PF00702 haloacid dehalogenase-like hydrolase AMD08_RS19290 PF01433 Peptidase family M1 AMD08_RS19290 PF09127 Leukotriene A4 hydrolase, C-terminal AMD08_RS19295 PF00672 HAMP domain AMD08_RS19295 PF00990 GGDEF domain AMD08_RS19300 PF01209 ubiE/COQ5 methyltransferase family AMD08_RS19305 PF07690 Major Facilitator Superfamily AMD08_RS19310 PF16576 AMD08_RS19310 AMD08_RS19315 PF13673 Acetyltransferase (GNAT) domain AMD08_RS19320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD08_RS19325 PF00004 ATPase family associated with various cellular activities (AAA) AMD08_RS19325 PF07724 AAA domain (Cdc48 subfamily) AMD08_RS19325 PF10431 C-terminal, D2-small domain, of ClpB protein AMD08_RS19330 PF00227 Proteasome subunit AMD08_RS19335 PF00589 Phage integrase family AMD08_RS19335 PF02899 Phage integrase, N-terminal SAM-like domain AMD08_RS19340 PF04340 Protein of unknown function, DUF484 AMD08_RS19345 PF01678 Diaminopimelate epimerase AMD08_RS19350 PF13627 AMD08_RS19350 AMD08_RS19355 PF04304 AMD08_RS19355 AMD08_RS19360 PF00326 Prolyl oligopeptidase family AMD08_RS19360 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD08_RS19365 PF00155 Aminotransferase class I and II AMD08_RS19375 PF00326 Prolyl oligopeptidase family AMD08_RS19375 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD08_RS19385 PF08212 Lipocalin-like domain AMD08_RS19390 PF08279 HTH domain AMD08_RS19390 PF13280 AMD08_RS19390 AMD08_RS19395 PF04338 Protein of unknown function, DUF481 AMD08_RS19400 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMD08_RS19400 PF03900 Porphobilinogen deaminase, C-terminal domain AMD08_RS19405 PF00072 Response regulator receiver domain AMD08_RS19405 PF04397 LytTr DNA-binding domain AMD08_RS19410 PF06580 AMD08_RS19410 AMD08_RS19415 PF02230 Phospholipase/Carboxylesterase AMD08_RS19420 PF13632 Glycosyl transferase family group 2 AMD08_RS19430 PF02225 PA domain AMD08_RS19430 PF04389 Peptidase family M28 AMD08_RS19435 PF00990 GGDEF domain AMD08_RS19450 PF00150 Cellulase (glycosyl hydrolase family 5) AMD08_RS19450 PF00553 Cellulose binding domain AMD08_RS19455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS19455 PF00672 HAMP domain AMD08_RS19455 PF17200 AMD08_RS19455 AMD08_RS19460 PF00990 GGDEF domain AMD08_RS19460 PF01590 GAF domain AMD08_RS19460 PF08447 PAS fold AMD08_RS19460 PF08448 PAS fold AMD08_RS19465 PF00675 Insulinase (Peptidase family M16) AMD08_RS19465 PF05193 Peptidase M16 inactive domain AMD08_RS19485 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD08_RS19485 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD08_RS19490 PF01904 Protein of unknown function DUF72 AMD08_RS19495 PF01204 Trehalase AMD08_RS19500 PF01987 Mitochondrial biogenesis AIM24 AMD08_RS19505 PF01544 CorA-like Mg2+ transporter protein AMD08_RS19515 PF00324 Amino acid permease AMD08_RS19525 PF01695 IstB-like ATP binding protein AMD08_RS19530 PF00665 Integrase core domain AMD08_RS19530 PF13936 Helix-turn-helix domain AMD08_RS19535 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD08_RS19540 PF00892 EamA-like transporter family AMD08_RS19545 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMD08_RS19575 PF07759 AMD08_RS19575 AMD08_RS19580 PF00326 Prolyl oligopeptidase family AMD08_RS19580 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD08_RS19585 PF12823 AMD08_RS19585 AMD08_RS19590 PF05708 Orthopoxvirus protein of unknown function (DUF830) AMD08_RS19600 PF13548 AMD08_RS19600 AMD08_RS19605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS19610 PF13409 Glutathione S-transferase, N-terminal domain AMD08_RS19610 PF13410 Glutathione S-transferase, C-terminal domain AMD08_RS19615 PF01145 SPFH domain / Band 7 family AMD08_RS19620 PF14412 AMD08_RS19620 AMD08_RS19625 PF07791 AMD08_RS19625 AMD08_RS19635 PF04002 RadC-like JAB domain AMD08_RS19650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS19660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS19660 PF08448 PAS fold AMD08_RS19665 PF00665 Integrase core domain AMD08_RS19665 PF13936 Helix-turn-helix domain AMD08_RS19670 PF01695 IstB-like ATP binding protein AMD08_RS19700 PF16576 AMD08_RS19700 AMD08_RS19705 PF00009 Elongation factor Tu GTP binding domain AMD08_RS19705 PF01583 Adenylylsulphate kinase AMD08_RS19710 PF01507 Phosphoadenosine phosphosulfate reductase family AMD08_RS19715 PF00175 Oxidoreductase NAD-binding domain AMD08_RS19715 PF00258 Flavodoxin AMD08_RS19715 PF00667 FAD binding domain AMD08_RS19720 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD08_RS19720 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD08_RS19725 PF01507 Phosphoadenosine phosphosulfate reductase family AMD08_RS19730 PF03929 AMD08_RS19730 AMD08_RS19735 PF00593 TonB dependent receptor AMD08_RS19735 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS19745 PF01590 GAF domain AMD08_RS19745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS19760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS19760 PF03466 LysR substrate binding domain AMD08_RS19765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD08_RS19770 PF00291 Pyridoxal-phosphate dependent enzyme AMD08_RS19775 PF04191 Phospholipid methyltransferase AMD08_RS19780 PF01661 Macro domain AMD08_RS19785 PF00274 Fructose-bisphosphate aldolase class-I AMD08_RS19790 PF00224 Pyruvate kinase, barrel domain AMD08_RS19790 PF02887 Pyruvate kinase, alpha/beta domain AMD08_RS19795 PF13419 Haloacid dehalogenase-like hydrolase AMD08_RS19800 PF00162 Phosphoglycerate kinase AMD08_RS19805 PF13163 AMD08_RS19805 AMD08_RS19810 PF10101 AMD08_RS19810 AMD08_RS19820 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD08_RS19820 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD08_RS19825 PF08332 Calcium/calmodulin dependent protein kinase II Association AMD08_RS19830 PF03922 OmpW family AMD08_RS19835 PF03922 OmpW family AMD08_RS19840 PF02265 S1/P1 Nuclease AMD08_RS19845 PF00753 Metallo-beta-lactamase superfamily AMD08_RS19850 PF13531 Bacterial extracellular solute-binding protein AMD08_RS19855 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS19860 PF00005 ABC transporter AMD08_RS19870 PF03544 Gram-negative bacterial TonB protein C-terminal AMD08_RS19870 PF05569 BlaR1 peptidase M56 AMD08_RS19875 PF03965 Penicillinase repressor AMD08_RS19880 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMD08_RS19885 PF16670 AMD08_RS19885 AMD08_RS19890 PF00593 TonB dependent receptor AMD08_RS19890 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS19895 PF01471 Putative peptidoglycan binding domain AMD08_RS19895 PF03734 L,D-transpeptidase catalytic domain AMD08_RS19900 PF01551 Peptidase family M23 AMD08_RS19910 PF00593 TonB dependent receptor AMD08_RS19910 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS19930 PF00456 Transketolase, thiamine diphosphate binding domain AMD08_RS19930 PF02779 Transketolase, pyrimidine binding domain AMD08_RS19930 PF02780 Transketolase, C-terminal domain AMD08_RS19935 PF00375 Sodium:dicarboxylate symporter family AMD08_RS19940 PF13584 AMD08_RS19940 AMD08_RS19945 PF00515 Tetratricopeptide repeat AMD08_RS19945 PF13519 von Willebrand factor type A domain AMD08_RS19950 PF00092 von Willebrand factor type A domain AMD08_RS19955 PF14316 AMD08_RS19955 AMD08_RS19960 PF01882 AMD08_RS19960 AMD08_RS19965 PF07726 ATPase family associated with various cellular activities (AAA) AMD08_RS19970 PF00263 AMD08_RS19970 AMD08_RS19970 PF03958 Bacterial type II/III secretion system short domain AMD08_RS19970 PF07660 Secretin and TonB N terminus short domain AMD08_RS19975 PF04351 Pilus assembly protein, PilP AMD08_RS19980 PF04350 Pilus assembly protein, PilO AMD08_RS19985 PF05137 AMD08_RS19985 AMD08_RS19990 PF11104 Type IV pilus assembly protein PilM; AMD08_RS19995 PF00905 Penicillin binding protein transpeptidase domain AMD08_RS19995 PF00912 Transglycosylase AMD08_RS19995 PF17092 AMD08_RS19995 AMD08_RS20005 PF00285 Citrate synthase AMD08_RS20010 PF01197 Ribosomal protein L31 AMD08_RS20015 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD08_RS20020 PF00270 DEAD/DEAH box helicase AMD08_RS20020 PF00271 Helicase conserved C-terminal domain AMD08_RS20020 PF17191 AMD08_RS20020 AMD08_RS20025 PF01042 Endoribonuclease L-PSP AMD08_RS20030 PF02824 TGS domain AMD08_RS20030 PF04607 Region found in RelA / SpoT proteins AMD08_RS20030 PF13291 ACT domain AMD08_RS20030 PF13328 HD domain AMD08_RS20035 PF01192 RNA polymerase Rpb6 AMD08_RS20040 PF00625 Guanylate kinase AMD08_RS20045 PF03755 AMD08_RS20045 AMD08_RS20045 PF08340 AMD08_RS20045 AMD08_RS20050 PF01138 3' exoribonuclease family, domain 1 AMD08_RS20050 PF03725 3' exoribonuclease family, domain 2 AMD08_RS20055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS20060 PF01725 Ham1 family AMD08_RS20065 PF04055 Radical SAM superfamily AMD08_RS20065 PF06969 HemN C-terminal domain AMD08_RS20070 PF07793 AMD08_RS20070 AMD08_RS20075 PF07238 PilZ domain AMD08_RS20080 PF00557 Metallopeptidase family M24 AMD08_RS20090 PF00557 Metallopeptidase family M24 AMD08_RS20090 PF05195 Aminopeptidase P, N-terminal domain AMD08_RS20095 PF03695 Uncharacterised protein family (UPF0149) AMD08_RS20105 PF05164 Cell division protein ZapA AMD08_RS20110 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMD08_RS20115 PF01878 EVE domain AMD08_RS20120 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMD08_RS20125 PF02643 Uncharacterized ACR, COG1430 AMD08_RS20130 PF13369 AMD08_RS20130 AMD08_RS20130 PF13371 Tetratricopeptide repeat AMD08_RS20135 PF00301 Rubredoxin AMD08_RS20140 PF02581 Thiamine monophosphate synthase/TENI AMD08_RS20145 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS20155 PF00202 Aminotransferase class-III AMD08_RS20160 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS20160 PF13424 Tetratricopeptide repeat AMD08_RS20160 PF13481 AAA domain AMD08_RS20165 PF00127 Copper binding proteins, plastocyanin/azurin family AMD08_RS20170 PF00155 Aminotransferase class I and II AMD08_RS20175 PF01042 Endoribonuclease L-PSP AMD08_RS20180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD08_RS20185 PF01593 Flavin containing amine oxidoreductase AMD08_RS20190 PF00593 TonB dependent receptor AMD08_RS20190 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS20200 PF00202 Aminotransferase class-III AMD08_RS20205 PF00520 Ion transport protein AMD08_RS20210 PF00106 short chain dehydrogenase AMD08_RS20220 PF01569 PAP2 superfamily AMD08_RS20220 PF09335 AMD08_RS20220 AMD08_RS20220 PF14067 AMD08_RS20220 AMD08_RS20225 PF01062 AMD08_RS20225 AMD08_RS20230 PF02190 ATP-dependent protease La (LON) domain AMD08_RS20235 PF01225 Mur ligase family, catalytic domain AMD08_RS20235 PF02875 Mur ligase family, glutamate ligase domain AMD08_RS20235 PF08245 Mur ligase middle domain AMD08_RS20240 PF00406 Adenylate kinase AMD08_RS20245 PF00365 Phosphofructokinase AMD08_RS20255 PF03030 Inorganic H+ pyrophosphatase AMD08_RS20265 PF00719 Inorganic pyrophosphatase AMD08_RS20270 PF08668 HDOD domain AMD08_RS20275 PF00593 TonB dependent receptor AMD08_RS20275 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS20280 PF12833 Helix-turn-helix domain AMD08_RS20285 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS20285 PF07676 WD40-like Beta Propeller Repeat AMD08_RS20290 PF01964 ThiC family AMD08_RS20290 PF13667 ThiC-associated domain AMD08_RS20295 PF00593 TonB dependent receptor AMD08_RS20295 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS20300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS20305 PF01019 Gamma-glutamyltranspeptidase AMD08_RS20310 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMD08_RS20310 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AMD08_RS20315 PF00205 Thiamine pyrophosphate enzyme, central domain AMD08_RS20315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD08_RS20315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD08_RS20320 PF13710 ACT domain AMD08_RS20325 PF00291 Pyridoxal-phosphate dependent enzyme AMD08_RS20330 PF00682 HMGL-like AMD08_RS20330 PF08502 LeuA allosteric (dimerisation) domain AMD08_RS20335 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD08_RS20340 PF00694 Aconitase C-terminal domain AMD08_RS20345 PF00330 Aconitase family (aconitate hydratase) AMD08_RS20350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS20350 PF03466 LysR substrate binding domain AMD08_RS20355 PF00990 GGDEF domain AMD08_RS20355 PF07494 Two component regulator propeller AMD08_RS20355 PF07495 Y_Y_Y domain AMD08_RS20360 PF00440 Bacterial regulatory proteins, tetR family AMD08_RS20360 PF14246 AefR-like transcriptional repressor, C-terminal region AMD08_RS20365 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMD08_RS20370 PF02321 Outer membrane efflux protein AMD08_RS20375 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMD08_RS20380 PF03279 AMD08_RS20380 AMD08_RS20385 PF04932 AMD08_RS20385 AMD08_RS20390 PF00534 Glycosyl transferases group 1 AMD08_RS20390 PF13439 Glycosyltransferase Family 4 AMD08_RS20395 PF10276 Zinc-finger domain AMD08_RS20405 PF00390 Malic enzyme, N-terminal domain AMD08_RS20405 PF01515 Phosphate acetyl/butaryl transferase AMD08_RS20405 PF03949 Malic enzyme, NAD binding domain AMD08_RS20410 PF00375 Sodium:dicarboxylate symporter family AMD08_RS20415 PF07396 Phosphate-selective porin O and P AMD08_RS20420 PF00072 Response regulator receiver domain AMD08_RS20420 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS20420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS20420 PF02743 Cache domain AMD08_RS20420 PF12860 AMD08_RS20420 AMD08_RS20425 PF00083 Sugar (and other) transporter AMD08_RS20430 PF13531 Bacterial extracellular solute-binding protein AMD08_RS20435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS20435 PF03466 LysR substrate binding domain AMD08_RS20440 PF00248 Aldo/keto reductase family AMD08_RS20445 PF12680 SnoaL-like domain AMD08_RS20450 PF11512 Agrobacterium tumefaciens protein Atu4866 AMD08_RS20455 PF00072 Response regulator receiver domain AMD08_RS20455 PF00196 Bacterial regulatory proteins, luxR family AMD08_RS20460 PF13531 Bacterial extracellular solute-binding protein AMD08_RS20465 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS20465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS20465 PF08521 AMD08_RS20465 AMD08_RS20470 PF00072 Response regulator receiver domain AMD08_RS20470 PF00486 Transcriptional regulatory protein, C terminal AMD08_RS20475 PF07396 Phosphate-selective porin O and P AMD08_RS20480 PF03600 Citrate transporter AMD08_RS20485 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS20490 PF00356 Bacterial regulatory proteins, lacI family AMD08_RS20490 PF13377 Periplasmic binding protein-like domain AMD08_RS20495 PF07690 Major Facilitator Superfamily AMD08_RS20500 PF00593 TonB dependent receptor AMD08_RS20500 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS20505 PF00128 Alpha amylase, catalytic domain AMD08_RS20510 PF01965 DJ-1/PfpI family AMD08_RS20515 PF08014 AMD08_RS20515 AMD08_RS20520 PF03193 Protein of unknown function, DUF258 AMD08_RS20525 PF00155 Aminotransferase class I and II AMD08_RS20530 PF13472 GDSL-like Lipase/Acylhydrolase family AMD08_RS20535 PF08242 Methyltransferase domain AMD08_RS20540 PF00593 TonB dependent receptor AMD08_RS20540 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS20545 PF01522 Polysaccharide deacetylase AMD08_RS20550 PF00462 Glutaredoxin AMD08_RS20550 PF00581 Rhodanese-like domain AMD08_RS20560 PF06041 Bacterial protein of unknown function (DUF924) AMD08_RS20565 PF01527 Transposase AMD08_RS20570 PF13683 AMD08_RS20570 AMD08_RS20575 PF09284 Rhamnogalacturonase B, N-terminal AMD08_RS20575 PF14683 Polysaccharide lyase family 4, domain III AMD08_RS20575 PF14686 Polysaccharide lyase family 4, domain II AMD08_RS20585 PF02645 Uncharacterised protein, DegV family COG1307 AMD08_RS20590 PF01327 Polypeptide deformylase AMD08_RS20595 PF03960 ArsC family AMD08_RS20605 PF02225 PA domain AMD08_RS20615 PF01270 Glycosyl hydrolases family 8 AMD08_RS20620 PF03170 Bacterial cellulose synthase subunit AMD08_RS20625 PF00535 Glycosyl transferase family 2 AMD08_RS20625 PF07238 PilZ domain AMD08_RS20640 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD08_RS20660 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD08_RS20660 PF13641 Glycosyltransferase like family 2 AMD08_RS20670 PF00535 Glycosyl transferase family 2 AMD08_RS20680 PF01636 Phosphotransferase enzyme family AMD08_RS20685 PF00593 TonB dependent receptor AMD08_RS20685 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS20690 PF04973 AMD08_RS20690 AMD08_RS20695 PF00392 Bacterial regulatory proteins, gntR family AMD08_RS20695 PF07702 UTRA domain AMD08_RS20705 PF00263 AMD08_RS20705 AMD08_RS20705 PF03958 Bacterial type II/III secretion system short domain AMD08_RS20715 PF10741 AMD08_RS20715 AMD08_RS20720 PF05137 AMD08_RS20720 AMD08_RS20725 PF03934 Type II secretion system (T2SS), protein K AMD08_RS20735 PF13544 AMD08_RS20735 AMD08_RS20740 PF12019 Type II transport protein GspH AMD08_RS20745 PF08334 Type II secretion system (T2SS), protein G AMD08_RS20750 PF00482 Type II secretion system (T2SS), protein F AMD08_RS20755 PF00437 Type II/IV secretion system protein AMD08_RS20755 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD08_RS20760 PF00082 Subtilase family AMD08_RS20760 PF04151 Bacterial pre-peptidase C-terminal domain AMD08_RS20765 PF05658 Head domain of trimeric autotransporter adhesin AMD08_RS20765 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD08_RS20765 PF13018 AMD08_RS20765 AMD08_RS20770 PF00082 Subtilase family AMD08_RS20770 PF04151 Bacterial pre-peptidase C-terminal domain AMD08_RS20775 PF03895 YadA-like C-terminal region AMD08_RS20775 PF05658 Head domain of trimeric autotransporter adhesin AMD08_RS20775 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD08_RS20785 PF02769 AIR synthase related protein, C-terminal domain AMD08_RS20785 PF13507 CobB/CobQ-like glutamine amidotransferase domain AMD08_RS20790 PF10411 Disulfide bond isomerase protein N-terminus AMD08_RS20790 PF13098 Thioredoxin-like domain AMD08_RS20795 PF00589 Phage integrase family AMD08_RS20795 PF02899 Phage integrase, N-terminal SAM-like domain AMD08_RS20800 PF06271 AMD08_RS20800 AMD08_RS20810 PF03739 AMD08_RS20810 AMD08_RS20815 PF03739 AMD08_RS20815 AMD08_RS20820 PF00883 Cytosol aminopeptidase family, catalytic domain AMD08_RS20820 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD08_RS20830 PF04364 DNA polymerase III chi subunit, HolC AMD08_RS20835 PF00133 tRNA synthetases class I (I, L, M and V) AMD08_RS20835 PF08264 Anticodon-binding domain of tRNA AMD08_RS20835 PF10458 Valyl tRNA synthetase tRNA binding arm AMD08_RS20840 PF00593 TonB dependent receptor AMD08_RS20840 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS20845 PF01464 Transglycosylase SLT domain AMD08_RS20845 PF14718 Soluble lytic murein transglycosylase L domain AMD08_RS20850 PF00544 Pectate lyase AMD08_RS20855 PF00583 Acetyltransferase (GNAT) family AMD08_RS20865 PF01066 CDP-alcohol phosphatidyltransferase AMD08_RS20870 PF13511 AMD08_RS20870 AMD08_RS20875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD08_RS20875 PF03129 Anticodon binding domain AMD08_RS20875 PF04073 Aminoacyl-tRNA editing domain AMD08_RS20880 PF00816 H-NS histone family AMD08_RS20885 PF06738 AMD08_RS20885 AMD08_RS20885 PF12821 AMD08_RS20885 AMD08_RS20890 PF02405 AMD08_RS20890 AMD08_RS20895 PF00005 ABC transporter AMD08_RS20900 PF02470 AMD08_RS20900 AMD08_RS20905 PF03886 Protein of unknown function (DUF330) AMD08_RS20910 PF13532 2OG-Fe(II) oxygenase superfamily AMD08_RS20915 PF01946 Thi4 family AMD08_RS20915 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AMD08_RS20920 PF05045 AMD08_RS20920 AMD08_RS20920 PF14307 AMD08_RS20920 AMD08_RS20925 PF01144 Coenzyme A transferase AMD08_RS20930 PF01144 Coenzyme A transferase AMD08_RS20935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD08_RS20935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD08_RS20935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD08_RS20935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD08_RS20940 PF00483 Nucleotidyl transferase AMD08_RS20940 PF01050 Mannose-6-phosphate isomerase AMD08_RS20945 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD08_RS20945 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD08_RS20945 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD08_RS20950 PF04321 RmlD substrate binding domain AMD08_RS20955 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMD08_RS20960 PF00483 Nucleotidyl transferase AMD08_RS20965 PF16363 AMD08_RS20965 AMD08_RS20970 PF01012 Electron transfer flavoprotein domain AMD08_RS20975 PF00766 Electron transfer flavoprotein FAD-binding domain AMD08_RS20975 PF01012 Electron transfer flavoprotein domain AMD08_RS20980 PF03706 AMD08_RS20980 AMD08_RS20985 PF01040 UbiA prenyltransferase family AMD08_RS20990 PF01565 FAD binding domain AMD08_RS20995 PF00106 short chain dehydrogenase AMD08_RS21005 PF01370 NAD dependent epimerase/dehydratase family AMD08_RS21010 PF01593 Flavin containing amine oxidoreductase AMD08_RS21015 PF04138 AMD08_RS21015 AMD08_RS21025 PF08241 Methyltransferase domain AMD08_RS21030 PF05045 AMD08_RS21030 AMD08_RS21035 PF14307 AMD08_RS21035 AMD08_RS21040 PF13578 Methyltransferase domain AMD08_RS21045 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS21050 PF00005 ABC transporter AMD08_RS21050 PF14524 Wzt C-terminal domain AMD08_RS21055 PF01061 AMD08_RS21055 AMD08_RS21060 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD08_RS21065 PF00291 Pyridoxal-phosphate dependent enzyme AMD08_RS21065 PF00571 CBS domain AMD08_RS21070 PF04325 Protein of unknown function (DUF465) AMD08_RS21080 PF14346 Domain of unknown function (DUF4398) AMD08_RS21085 PF00437 Type II/IV secretion system protein AMD08_RS21090 PF13410 Glutathione S-transferase, C-terminal domain AMD08_RS21090 PF13417 Glutathione S-transferase, N-terminal domain AMD08_RS21095 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD08_RS21100 PF00270 DEAD/DEAH box helicase AMD08_RS21100 PF00271 Helicase conserved C-terminal domain AMD08_RS21105 PF02225 PA domain AMD08_RS21105 PF04253 Transferrin receptor-like dimerisation domain AMD08_RS21105 PF04389 Peptidase family M28 AMD08_RS21110 PF00593 TonB dependent receptor AMD08_RS21110 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS21115 PF01242 6-pyruvoyl tetrahydropterin synthase AMD08_RS21120 PF09361 AMD08_RS21120 AMD08_RS21125 PF13500 AAA domain AMD08_RS21135 PF13185 GAF domain AMD08_RS21140 PF04994 TfoX C-terminal domain AMD08_RS21145 PF00756 Putative esterase AMD08_RS21150 PF00593 TonB dependent receptor AMD08_RS21150 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS21155 PF13419 Haloacid dehalogenase-like hydrolase AMD08_RS21160 PF00817 impB/mucB/samB family AMD08_RS21160 PF11799 impB/mucB/samB family C-terminal domain AMD08_RS21165 PF07977 FabA-like domain AMD08_RS21170 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD08_RS21170 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD08_RS21180 PF01432 Peptidase family M3 AMD08_RS21185 PF00291 Pyridoxal-phosphate dependent enzyme AMD08_RS21195 PF00394 Multicopper oxidase AMD08_RS21195 PF07731 Multicopper oxidase AMD08_RS21195 PF07732 Multicopper oxidase AMD08_RS21200 PF05275 AMD08_RS21200 AMD08_RS21205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD08_RS21215 PF01471 Putative peptidoglycan binding domain AMD08_RS21230 PF01380 SIS domain AMD08_RS21230 PF13522 Glutamine amidotransferase domain AMD08_RS21235 PF13437 HlyD family secretion protein AMD08_RS21235 PF13533 Biotin-lipoyl like AMD08_RS21240 PF00005 ABC transporter AMD08_RS21245 PF02687 AMD08_RS21245 AMD08_RS21245 PF12704 MacB-like periplasmic core domain AMD08_RS21250 PF02687 AMD08_RS21250 AMD08_RS21250 PF12704 MacB-like periplasmic core domain AMD08_RS21260 PF00072 Response regulator receiver domain AMD08_RS21260 PF00158 Sigma-54 interaction domain AMD08_RS21260 PF02954 Bacterial regulatory protein, Fis family AMD08_RS21265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS21270 PF00132 Bacterial transferase hexapeptide (six repeats) AMD08_RS21270 PF12804 MobA-like NTP transferase domain AMD08_RS21270 PF14602 Hexapeptide repeat of succinyl-transferase AMD08_RS21275 PF04138 AMD08_RS21275 AMD08_RS21280 PF01817 Chorismate mutase type II AMD08_RS21285 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMD08_RS21285 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMD08_RS21290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD08_RS21290 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD08_RS21295 PF00231 ATP synthase AMD08_RS21300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD08_RS21300 PF00306 ATP synthase alpha/beta chain, C terminal domain AMD08_RS21300 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD08_RS21305 PF00213 ATP synthase delta (OSCP) subunit AMD08_RS21310 PF00430 ATP synthase B/B' CF(0) AMD08_RS21315 PF00137 ATP synthase subunit C AMD08_RS21320 PF00119 ATP synthase A chain AMD08_RS21340 PF00364 Biotin-requiring enzyme AMD08_RS21340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD08_RS21340 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS21350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD08_RS21350 PF00364 Biotin-requiring enzyme AMD08_RS21350 PF02817 e3 binding domain AMD08_RS21355 PF11101 AMD08_RS21355 AMD08_RS21360 PF03167 Uracil DNA glycosylase superfamily AMD08_RS21365 PF03922 OmpW family AMD08_RS21390 PF03180 NLPA lipoprotein AMD08_RS21395 PF00528 Binding-protein-dependent transport system inner membrane component AMD08_RS21400 PF00005 ABC transporter AMD08_RS21400 PF09383 NIL domain AMD08_RS21405 PF00892 EamA-like transporter family AMD08_RS21410 PF04461 Protein of unknown function (DUF520) AMD08_RS21420 PF00072 Response regulator receiver domain AMD08_RS21420 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS21420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS21425 PF12146 Putative lysophospholipase AMD08_RS21430 PF07209 AMD08_RS21430 AMD08_RS21440 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS21445 PF13419 Haloacid dehalogenase-like hydrolase AMD08_RS21450 PF00849 RNA pseudouridylate synthase AMD08_RS21455 PF05175 Methyltransferase small domain AMD08_RS21465 PF07995 Glucose / Sorbosone dehydrogenase AMD08_RS21470 PF11607 Protein of unknown function (DUF3247) AMD08_RS21475 PF00072 Response regulator receiver domain AMD08_RS21475 PF00512 His Kinase A (phospho-acceptor) domain AMD08_RS21475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS21475 PF08448 PAS fold AMD08_RS21475 PF13188 PAS domain AMD08_RS21490 PF11454 AMD08_RS21490 AMD08_RS21495 PF00842 Alanine racemase, C-terminal domain AMD08_RS21495 PF01168 Alanine racemase, N-terminal domain AMD08_RS21500 PF01266 FAD dependent oxidoreductase AMD08_RS21505 PF01037 AsnC family AMD08_RS21505 PF13404 AsnC-type helix-turn-helix domain AMD08_RS21515 PF01641 SelR domain AMD08_RS21520 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme AMD08_RS21525 PF01618 AMD08_RS21525 AMD08_RS21530 PF00691 OmpA family AMD08_RS21530 PF13677 AMD08_RS21530 AMD08_RS21540 PF13223 AMD08_RS21540 AMD08_RS21550 PF11730 AMD08_RS21550 AMD08_RS21555 PF01061 AMD08_RS21555 AMD08_RS21560 PF00005 ABC transporter AMD08_RS21565 PF00999 Sodium/hydrogen exchanger family AMD08_RS21570 PF02469 Fasciclin domain AMD08_RS21575 PF03167 Uracil DNA glycosylase superfamily AMD08_RS21575 PF13566 AMD08_RS21575 AMD08_RS21580 PF04055 Radical SAM superfamily AMD08_RS21585 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD08_RS21590 PF07681 AMD08_RS21590 AMD08_RS21595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS21595 PF03466 LysR substrate binding domain AMD08_RS21600 PF03358 NADPH-dependent FMN reductase AMD08_RS21605 PF00248 Aldo/keto reductase family AMD08_RS21610 PF00535 Glycosyl transferase family 2 AMD08_RS21615 PF01431 Peptidase family M13 AMD08_RS21615 PF05649 Peptidase family M13 AMD08_RS21620 PF09995 AMD08_RS21620 AMD08_RS21635 PF13520 Amino acid permease AMD08_RS21645 PF00072 Response regulator receiver domain AMD08_RS21645 PF04397 LytTr DNA-binding domain AMD08_RS21650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD08_RS21650 PF06580 AMD08_RS21650 AMD08_RS21655 PF01266 FAD dependent oxidoreductase AMD08_RS21665 PF05974 Domain of unknown function (DUF892) AMD08_RS21670 PF05067 Manganese containing catalase AMD08_RS21690 PF01339 CheB methylesterase AMD08_RS21690 PF01739 CheR methyltransferase, SAM binding domain AMD08_RS21690 PF03705 CheR methyltransferase, all-alpha domain AMD08_RS21690 PF07536 AMD08_RS21690 AMD08_RS21690 PF08447 PAS fold AMD08_RS21690 PF13596 PAS domain AMD08_RS21695 PF00072 Response regulator receiver domain AMD08_RS21705 PF00072 Response regulator receiver domain AMD08_RS21705 PF00158 Sigma-54 interaction domain AMD08_RS21705 PF02954 Bacterial regulatory protein, Fis family AMD08_RS21715 PF01654 AMD08_RS21715 AMD08_RS21720 PF02322 AMD08_RS21720 AMD08_RS21735 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS21740 PF01370 NAD dependent epimerase/dehydratase family AMD08_RS21745 PF13692 Glycosyl transferases group 1 AMD08_RS21750 PF03275 UDP-galactopyranose mutase AMD08_RS21750 PF13450 NAD(P)-binding Rossmann-like domain AMD08_RS21760 PF00005 ABC transporter AMD08_RS21760 PF00664 ABC transporter transmembrane region AMD08_RS21765 PF12244 AMD08_RS21765 AMD08_RS21770 PF13628 AMD08_RS21770 AMD08_RS21775 PF00107 Zinc-binding dehydrogenase AMD08_RS21775 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS21775 PF13823 Alcohol dehydrogenase GroES-associated AMD08_RS21785 PF03692 AMD08_RS21785 AMD08_RS21800 PF11828 AMD08_RS21800 AMD08_RS21805 PF05650 AMD08_RS21805 AMD08_RS21810 PF00691 OmpA family AMD08_RS21815 PF11445 AMD08_RS21815 AMD08_RS21820 PF00593 TonB dependent receptor AMD08_RS21820 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS21825 PF12040 AMD08_RS21825 AMD08_RS21830 PF12040 AMD08_RS21830 AMD08_RS21830 PF12679 AMD08_RS21830 AMD08_RS21835 PF00005 ABC transporter AMD08_RS21840 PF00246 Zinc carboxypeptidase AMD08_RS21845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS21845 PF03466 LysR substrate binding domain AMD08_RS21850 PF01042 Endoribonuclease L-PSP AMD08_RS21860 PF12849 PBP superfamily domain AMD08_RS21865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD08_RS21865 PF00672 HAMP domain AMD08_RS21870 PF01223 DNA/RNA non-specific endonuclease AMD08_RS21875 PF12697 Alpha/beta hydrolase family AMD08_RS21885 PF02525 Flavodoxin-like fold AMD08_RS21890 PF03795 YCII-related domain AMD08_RS21900 PF07866 Protein of unknown function (DUF1653) AMD08_RS21925 PF00557 Metallopeptidase family M24 AMD08_RS21930 PF11903 AMD08_RS21930 AMD08_RS21935 PF01695 IstB-like ATP binding protein AMD08_RS21940 PF00665 Integrase core domain AMD08_RS21940 PF13936 Helix-turn-helix domain AMD08_RS21945 PF01527 Transposase AMD08_RS21950 PF00665 Integrase core domain AMD08_RS21950 PF13276 AMD08_RS21950 AMD08_RS21960 PF00717 Peptidase S24-like AMD08_RS21965 PF00817 impB/mucB/samB family AMD08_RS21965 PF11799 impB/mucB/samB family C-terminal domain AMD08_RS21965 PF13438 AMD08_RS21965 AMD08_RS21970 PF07791 AMD08_RS21970 AMD08_RS21985 PF01555 DNA methylase AMD08_RS21995 PF04860 Phage portal protein AMD08_RS22000 PF03237 Terminase-like family AMD08_RS22000 PF06056 Putative ATPase subunit of terminase (gpP-like) AMD08_RS22005 PF05929 AMD08_RS22005 AMD08_RS22010 PF05125 AMD08_RS22010 AMD08_RS22015 PF05944 AMD08_RS22015 AMD08_RS22020 PF05926 AMD08_RS22020 AMD08_RS22025 PF05489 Phage Tail Protein X AMD08_RS22030 PF16931 AMD08_RS22030 AMD08_RS22035 PF05449 AMD08_RS22035 AMD08_RS22050 PF06891 AMD08_RS22050 AMD08_RS22055 PF05069 AMD08_RS22055 AMD08_RS22060 PF04865 AMD08_RS22060 AMD08_RS22065 PF09684 AMD08_RS22065 AMD08_RS22085 PF04717 Phage-related baseplate assembly protein AMD08_RS22090 PF04965 Gene 25-like lysozyme AMD08_RS22095 PF04984 Phage tail sheath protein AMD08_RS22100 PF04985 AMD08_RS22100 AMD08_RS22105 PF10109 AMD08_RS22105 AMD08_RS22115 PF06995 AMD08_RS22115 AMD08_RS22120 PF05954 Phage late control gene D protein (GPD) AMD08_RS22130 PF04606 AMD08_RS22130 AMD08_RS22145 PF13155 Toprim-like AMD08_RS22150 PF01695 IstB-like ATP binding protein AMD08_RS22155 PF00665 Integrase core domain AMD08_RS22155 PF13936 Helix-turn-helix domain AMD08_RS22215 PF00140 Sigma-70 factor, region 1 AMD08_RS22215 PF03979 Sigma-70 factor, region 1 AMD08_RS22215 PF04539 Sigma-70 region 3 AMD08_RS22215 PF04542 Sigma-70 region 2 AMD08_RS22215 PF04545 Sigma-70, region 4 AMD08_RS22215 PF04546 Sigma-70, non-essential region AMD08_RS22220 PF02580 D-Tyr-tRNA(Tyr) deacylase AMD08_RS22225 PF03279 AMD08_RS22225 AMD08_RS22230 PF13420 Acetyltransferase (GNAT) domain AMD08_RS22240 PF00925 GTP cyclohydrolase II AMD08_RS22245 PF03703 AMD08_RS22245 AMD08_RS22250 PF03703 AMD08_RS22250 AMD08_RS22255 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD08_RS22260 PF00535 Glycosyl transferase family 2 AMD08_RS22265 PF04932 AMD08_RS22265 AMD08_RS22270 PF13231 AMD08_RS22270 AMD08_RS22275 PF01029 NusB family AMD08_RS22275 PF01189 NOL1/NOP2/sun family AMD08_RS22280 PF00551 Formyl transferase AMD08_RS22280 PF02911 Formyl transferase, C-terminal domain AMD08_RS22285 PF01327 Polypeptide deformylase AMD08_RS22290 PF01476 LysM domain AMD08_RS22295 PF02481 DNA recombination-mediator protein A AMD08_RS22300 PF04361 AMD08_RS22300 AMD08_RS22305 PF00114 Pilin (bacterial filament) AMD08_RS22305 PF14237 AMD08_RS22305 AMD08_RS22310 PF06271 AMD08_RS22310 AMD08_RS22310 PF14237 AMD08_RS22310 AMD08_RS22315 PF01131 DNA topoisomerase AMD08_RS22315 PF01751 Toprim domain AMD08_RS22315 PF13368 AMD08_RS22315 AMD08_RS22320 PF01300 Telomere recombination AMD08_RS22335 PF13561 Enoyl-(Acyl carrier protein) reductase AMD08_RS22345 PF01343 Peptidase family S49 AMD08_RS22350 PF01554 MatE AMD08_RS22355 PF12412 AMD08_RS22355 AMD08_RS22360 PF11304 AMD08_RS22360 AMD08_RS22370 PF00270 DEAD/DEAH box helicase AMD08_RS22370 PF00271 Helicase conserved C-terminal domain AMD08_RS22375 PF13410 Glutathione S-transferase, C-terminal domain AMD08_RS22375 PF13417 Glutathione S-transferase, N-terminal domain AMD08_RS22380 PF01936 NYN domain AMD08_RS22380 PF12872 OST-HTH/LOTUS domain AMD08_RS22390 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD08_RS22395 PF03458 AMD08_RS22395 AMD08_RS22400 PF00140 Sigma-70 factor, region 1 AMD08_RS22400 PF04542 Sigma-70 region 2 AMD08_RS22400 PF04545 Sigma-70, region 4 AMD08_RS22405 PF03167 Uracil DNA glycosylase superfamily AMD08_RS22410 PF00072 Response regulator receiver domain AMD08_RS22415 PF02687 AMD08_RS22415 AMD08_RS22420 PF00005 ABC transporter AMD08_RS22425 PF00270 DEAD/DEAH box helicase AMD08_RS22425 PF00271 Helicase conserved C-terminal domain AMD08_RS22425 PF12300 AMD08_RS22425 AMD08_RS22430 PF00085 Thioredoxin AMD08_RS22435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD08_RS22435 PF07497 Rho termination factor, RNA-binding domain AMD08_RS22435 PF07498 Rho termination factor, N-terminal domain AMD08_RS22440 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMD08_RS22445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS22445 PF03466 LysR substrate binding domain AMD08_RS22455 PF03971 Monomeric isocitrate dehydrogenase AMD08_RS22465 PF00270 DEAD/DEAH box helicase AMD08_RS22475 PF09709 AMD08_RS22475 AMD08_RS22480 PF05107 AMD08_RS22480 AMD08_RS22485 PF01930 Domain of unknown function DUF83 AMD08_RS22490 PF01867 CRISPR associated protein Cas1 AMD08_RS22500 PF00665 Integrase core domain AMD08_RS22500 PF13936 Helix-turn-helix domain AMD08_RS22505 PF01695 IstB-like ATP binding protein AMD08_RS22515 PF01476 LysM domain AMD08_RS22520 PF14489 QueF-like protein AMD08_RS22520 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMD08_RS22525 PF01546 Peptidase family M20/M25/M40 AMD08_RS22525 PF07687 Peptidase dimerisation domain AMD08_RS22530 PF16576 AMD08_RS22530 AMD08_RS22535 PF00873 AcrB/AcrD/AcrF family AMD08_RS22540 PF00873 AcrB/AcrD/AcrF family AMD08_RS22545 PF07063 Domain of unknown function (DUF1338) AMD08_RS22560 PF13419 Haloacid dehalogenase-like hydrolase AMD08_RS22565 PF13202 EF hand AMD08_RS22570 PF13202 EF hand AMD08_RS22580 PF14255 AMD08_RS22580 AMD08_RS22585 PF01427 D-ala-D-ala dipeptidase AMD08_RS22590 PF01510 N-acetylmuramoyl-L-alanine amidase AMD08_RS22595 PF00877 NlpC/P60 family AMD08_RS22595 PF12913 SH3 domain of the SH3b1 type AMD08_RS22595 PF12914 SH3 domain of SH3b2 type AMD08_RS22600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD08_RS22600 PF13378 Enolase C-terminal domain-like AMD08_RS22610 PF13520 Amino acid permease AMD08_RS22625 PF05360 AMD08_RS22625 AMD08_RS22630 PF07995 Glucose / Sorbosone dehydrogenase AMD08_RS22635 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD08_RS22635 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD08_RS22635 PF14310 Fibronectin type III-like domain AMD08_RS22640 PF02152 Dihydroneopterin aldolase AMD08_RS22645 PF00814 Glycoprotease family AMD08_RS22650 PF01165 Ribosomal protein S21 AMD08_RS22655 PF09424 Yqey-like protein AMD08_RS22660 PF03631 AMD08_RS22660 AMD08_RS22665 PF01807 CHC2 zinc finger AMD08_RS22665 PF08275 DNA primase catalytic core, N-terminal domain AMD08_RS22665 PF08278 DNA primase DnaG DnaB-binding AMD08_RS22665 PF10410 DnaB-helicase binding domain of primase AMD08_RS22665 PF13155 Toprim-like AMD08_RS22670 PF13593 SBF-like CPA transporter family (DUF4137) AMD08_RS22675 PF13899 Thioredoxin-like AMD08_RS22680 PF01040 UbiA prenyltransferase family AMD08_RS22685 PF02628 AMD08_RS22685 AMD08_RS22695 PF02104 AMD08_RS22695 AMD08_RS22700 PF11137 AMD08_RS22700 AMD08_RS22705 PF00510 Cytochrome c oxidase subunit III AMD08_RS22710 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMD08_RS22715 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD08_RS22720 PF10003 AMD08_RS22720 AMD08_RS22725 PF00171 Aldehyde dehydrogenase family AMD08_RS22725 PF01619 Proline dehydrogenase AMD08_RS22725 PF14850 DNA-binding domain of Proline dehydrogenase AMD08_RS22765 PF03594 AMD08_RS22765 AMD08_RS22770 PF00360 Phytochrome region AMD08_RS22770 PF01590 GAF domain AMD08_RS22770 PF08446 PAS fold AMD08_RS22770 PF08448 PAS fold AMD08_RS22775 PF01126 Heme oxygenase AMD08_RS22780 PF07690 Major Facilitator Superfamily AMD08_RS22785 PF01263 Aldose 1-epimerase AMD08_RS22785 PF01471 Putative peptidoglycan binding domain AMD08_RS22785 PF13406 Transglycosylase SLT domain AMD08_RS22800 PF01925 AMD08_RS22800 AMD08_RS22805 PF13555 P-loop containing region of AAA domain AMD08_RS22805 PF13558 Putative exonuclease SbcCD, C subunit AMD08_RS22810 PF13835 AMD08_RS22810 AMD08_RS22815 PF11855 AMD08_RS22815 AMD08_RS22820 PF01227 GTP cyclohydrolase I AMD08_RS22825 PF12802 MarR family AMD08_RS22830 PF07869 AMD08_RS22830 AMD08_RS22835 PF13437 HlyD family secretion protein AMD08_RS22835 PF13533 Biotin-lipoyl like AMD08_RS22840 PF02321 Outer membrane efflux protein AMD08_RS22845 PF04632 AMD08_RS22845 AMD08_RS22850 PF00083 Sugar (and other) transporter AMD08_RS22855 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMD08_RS22860 PF13091 PLD-like domain AMD08_RS22875 PF05016 Plasmid stabilisation system protein AMD08_RS22880 PF03869 Arc-like DNA binding domain AMD08_RS22885 PF01850 PIN domain AMD08_RS22890 PF00756 Putative esterase AMD08_RS22895 PF09722 AMD08_RS22895 AMD08_RS22910 PF00849 RNA pseudouridylate synthase AMD08_RS22920 PF01527 Transposase AMD08_RS22930 PF13333 AMD08_RS22930 AMD08_RS22935 PF07080 Protein of unknown function (DUF1348) AMD08_RS22940 PF01609 Transposase DDE domain AMD08_RS22945 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMD08_RS22945 PF00364 Biotin-requiring enzyme AMD08_RS22945 PF02626 Allophanate hydrolase subunit 2 AMD08_RS22945 PF02682 Allophanate hydrolase subunit 1 AMD08_RS22945 PF02785 Biotin carboxylase C-terminal domain AMD08_RS22945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD08_RS22950 PF01425 Amidase AMD08_RS22955 PF01609 Transposase DDE domain AMD08_RS22960 PF07080 Protein of unknown function (DUF1348) AMD08_RS22970 PF05299 M61 glycyl aminopeptidase AMD08_RS22975 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD08_RS22980 PF13538 UvrD-like helicase C-terminal domain AMD08_RS22980 PF13604 AAA domain AMD08_RS22985 PF00580 UvrD/REP helicase N-terminal domain AMD08_RS22985 PF12705 PD-(D/E)XK nuclease superfamily AMD08_RS22985 PF13361 UvrD-like helicase C-terminal domain AMD08_RS22990 PF04257 Exodeoxyribonuclease V, gamma subunit AMD08_RS23005 PF00005 ABC transporter AMD08_RS23010 PF02405 AMD08_RS23010 AMD08_RS23015 PF02470 AMD08_RS23015 AMD08_RS23020 PF05494 Toluene tolerance, Ttg2 AMD08_RS23025 PF13466 STAS domain AMD08_RS23030 PF04333 AMD08_RS23030 AMD08_RS23035 PF14534 Domain of unknown function (DUF4440) AMD08_RS23040 PF00255 Glutathione peroxidase AMD08_RS23050 PF02646 AMD08_RS23050 AMD08_RS23055 PF08240 Alcohol dehydrogenase GroES-like domain AMD08_RS23055 PF13602 Zinc-binding dehydrogenase AMD08_RS23060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD08_RS23060 PF03466 LysR substrate binding domain AMD08_RS23070 PF13410 Glutathione S-transferase, C-terminal domain AMD08_RS23070 PF13417 Glutathione S-transferase, N-terminal domain AMD08_RS23080 PF13520 Amino acid permease AMD08_RS23085 PF07971 Glycosyl hydrolase family 92 AMD08_RS23090 PF10947 AMD08_RS23090 AMD08_RS23095 PF00990 GGDEF domain AMD08_RS23095 PF08448 PAS fold AMD08_RS23100 PF05651 AMD08_RS23100 AMD08_RS23100 PF13556 PucR C-terminal helix-turn-helix domain AMD08_RS23105 PF02595 Glycerate kinase family AMD08_RS23110 PF07690 Major Facilitator Superfamily AMD08_RS23115 PF01244 Membrane dipeptidase (Peptidase family M19) AMD08_RS23125 PF10672 S-adenosylmethionine-dependent methyltransferase AMD08_RS23130 PF03741 AMD08_RS23130 AMD08_RS23135 PF01694 Rhomboid family AMD08_RS23140 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD08_RS23145 PF00593 TonB dependent receptor AMD08_RS23145 PF07715 TonB-dependent Receptor Plug Domain AMD08_RS23150 PF01569 PAP2 superfamily AMD08_RS23155 PF01926 50S ribosome-binding GTPase AMD08_RS23155 PF10396 GTP-binding protein TrmE N-terminus AMD08_RS23155 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AMD08_RS23160 PF00656 Caspase domain AMD08_RS23160 PF01522 Polysaccharide deacetylase AMD08_RS23160 PF13432 Tetratricopeptide repeat AMD08_RS23170 PF02096 60Kd inner membrane protein AMD08_RS23170 PF14849 YidC periplasmic domain AMD08_RS23175 PF00825 Ribonuclease P AMD08_RS23180 PF00468 Ribosomal protein L34