AMD08_RS00400 SM00382 ATPases associated with a variety of cellular activities AMD08_RS00400 SM00760 Bacterial dnaA protein helix-turn-helix domain AMD08_RS00405 SM00480 DNA polymerase III beta subunit AMD08_RS00415 SM00387 Histidine kinase-like ATPases AMD08_RS00415 SM00433 TopoisomeraseII AMD08_RS00430 SM00028 Tetratricopeptide repeats AMD08_RS00465 SM00155 Phospholipase D. Active site motifs. AMD08_RS00480 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD08_RS00510 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD08_RS00510 SM00245 tail specific protease AMD08_RS00590 SM00633 Glycosyl hydrolase family 10 AMD08_RS00605 SM00633 Glycosyl hydrolase family 10 AMD08_RS00620 SM00633 Glycosyl hydrolase family 10 AMD08_RS00645 SM01007 Class II Aldolase and Adducin N-terminal domain AMD08_RS00675 SM00612 AMD08_RS00675 AMD08_RS00695 SM00758 AMD08_RS00695 AMD08_RS00695 SM01217 AMD08_RS00695 AMD08_RS00705 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD08_RS00720 SM00354 helix_turn _helix lactose operon repressor AMD08_RS00795 SM00382 ATPases associated with a variety of cellular activities AMD08_RS00805 SM00836 DALR anticodon binding domain AMD08_RS00855 SM00564 beta-propeller repeat AMD08_RS00885 SM00091 PAS domain AMD08_RS00885 SM00387 Histidine kinase-like ATPases AMD08_RS00885 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS00885 SM00448 cheY-homologous receiver domain AMD08_RS00895 SM00346 helix_turn_helix isocitrate lyase regulation AMD08_RS00915 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD08_RS00970 SM00421 helix_turn_helix, Lux Regulon AMD08_RS00970 SM00448 cheY-homologous receiver domain AMD08_RS01110 SM00155 Phospholipase D. Active site motifs. AMD08_RS01130 SM01266 AMD08_RS01130 AMD08_RS01140 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS01180 SM00382 ATPases associated with a variety of cellular activities AMD08_RS01180 SM01086 C-terminal, D2-small domain, of ClpB protein AMD08_RS01205 SM00915 Jacalin-like lectin domain AMD08_RS01215 SM00965 Secretin and TonB N terminus short domain AMD08_RS01235 SM00220 Serine/Threonine protein kinases, catalytic domain AMD08_RS01245 SM00028 Tetratricopeptide repeats AMD08_RS01260 SM00240 Forkhead associated domain AMD08_RS01285 SM00331 Sigma factor PP2C-like phosphatases AMD08_RS01285 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD08_RS01305 SM00912 haemagglutination activity domain AMD08_RS01320 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD08_RS01320 SM00474 3'-5' exonuclease AMD08_RS01320 SM00475 5'-3' exonuclease AMD08_RS01320 SM00482 DNA polymerase A domain AMD08_RS01375 SM00563 Phosphate acyltransferases AMD08_RS01415 SM00822 AMD08_RS01415 AMD08_RS01440 SM00825 Beta-ketoacyl synthase AMD08_RS01450 SM00248 ankyrin repeats AMD08_RS01475 SM01057 Eukaryotic-type carbonic anhydrase AMD08_RS01480 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD08_RS01480 SM00924 MgtE intracellular N domain AMD08_RS01485 SM00881 CoA binding domain AMD08_RS01545 SM00382 ATPases associated with a variety of cellular activities AMD08_RS01555 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS01595 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS01605 SM00382 ATPases associated with a variety of cellular activities AMD08_RS01625 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD08_RS01675 SM01004 Delta-aminolevulinic acid dehydratase AMD08_RS01690 SM00477 DNA/RNA non-specific endonuclease AMD08_RS01690 SM00892 DNA/RNA non-specific endonuclease AMD08_RS01720 SM00491 AMD08_RS01720 AMD08_RS01725 SM01060 AMD08_RS01725 AMD08_RS01730 SM00248 ankyrin repeats AMD08_RS01750 SM00448 cheY-homologous receiver domain AMD08_RS01750 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS01755 SM00387 Histidine kinase-like ATPases AMD08_RS01755 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS01820 SM00960 Roadblock/LC7 domain AMD08_RS01850 SM00849 Metallo-beta-lactamase superfamily AMD08_RS01890 SM00382 ATPases associated with a variety of cellular activities AMD08_RS01905 SM00421 helix_turn_helix, Lux Regulon AMD08_RS01905 SM00448 cheY-homologous receiver domain AMD08_RS01920 SM01060 AMD08_RS01920 AMD08_RS01965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD08_RS01985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS01985 SM00387 Histidine kinase-like ATPases AMD08_RS01985 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS01990 SM00448 cheY-homologous receiver domain AMD08_RS01990 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS02040 SM00244 prohibitin homologues AMD08_RS02070 SM00052 Putative diguanylate phosphodiesterase AMD08_RS02085 SM00382 ATPases associated with a variety of cellular activities AMD08_RS02095 SM00938 Nitrogen regulatory protein P-II AMD08_RS02140 SM00823 Phosphopantetheine attachment site AMD08_RS02140 SM00824 Thioesterase AMD08_RS02170 SM00836 DALR anticodon binding domain AMD08_RS02170 SM01016 Arginyl tRNA synthetase N terminal dom AMD08_RS02200 SM01259 AMD08_RS02200 AMD08_RS02220 SM00470 ParB-like nuclease domain AMD08_RS02265 SM00363 S4 RNA-binding domain AMD08_RS02295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD08_RS02295 SM01232 AMD08_RS02295 AMD08_RS02310 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS02310 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS02345 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD08_RS02370 SM00354 helix_turn _helix lactose operon repressor AMD08_RS02380 SM00563 Phosphate acyltransferases AMD08_RS02385 SM00829 Enoylreductase AMD08_RS02405 SM00382 ATPases associated with a variety of cellular activities AMD08_RS02415 SM00829 Enoylreductase AMD08_RS02540 SM00382 ATPases associated with a variety of cellular activities AMD08_RS02650 SM00487 DEAD-like helicases superfamily AMD08_RS02650 SM00490 helicase superfamily c-terminal domain AMD08_RS02670 SM00822 AMD08_RS02670 AMD08_RS02930 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AMD08_RS02955 SM00421 helix_turn_helix, Lux Regulon AMD08_RS02955 SM00448 cheY-homologous receiver domain AMD08_RS02975 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS03055 SM00642 Alpha-amylase domain AMD08_RS03060 SM00642 Alpha-amylase domain AMD08_RS03065 SM00642 Alpha-amylase domain AMD08_RS03115 SM00354 helix_turn _helix lactose operon repressor AMD08_RS03155 SM00344 helix_turn_helix ASNC type AMD08_RS03175 SM00382 ATPases associated with a variety of cellular activities AMD08_RS03190 SM00382 ATPases associated with a variety of cellular activities AMD08_RS03225 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS03255 SM00855 Phosphoglycerate mutase family AMD08_RS03260 SM00867 YceI-like domain AMD08_RS03265 SM00155 Phospholipase D. Active site motifs. AMD08_RS03275 SM00563 Phosphate acyltransferases AMD08_RS03290 SM00028 Tetratricopeptide repeats AMD08_RS03315 SM01230 AMD08_RS03315 AMD08_RS03320 SM00938 Nitrogen regulatory protein P-II AMD08_RS03330 SM00387 Histidine kinase-like ATPases AMD08_RS03330 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS03335 SM00382 ATPases associated with a variety of cellular activities AMD08_RS03335 SM00448 cheY-homologous receiver domain AMD08_RS03395 SM00450 Rhodanese Homology Domain AMD08_RS03420 SM00387 Histidine kinase-like ATPases AMD08_RS03420 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS03425 SM00382 ATPases associated with a variety of cellular activities AMD08_RS03425 SM00448 cheY-homologous receiver domain AMD08_RS03535 SM00563 Phosphate acyltransferases AMD08_RS03570 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS03595 SM00100 Cyclic nucleotide-monophosphate binding domain AMD08_RS03595 SM00267 diguanylate cyclase AMD08_RS03620 SM00878 Biotin carboxylase C-terminal domain AMD08_RS03645 SM00953 AMD08_RS03645 AMD08_RS03685 SM00833 Cobalamin synthesis protein cobW C-terminal domain AMD08_RS03715 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD08_RS03750 SM00829 Enoylreductase AMD08_RS03780 SM00487 DEAD-like helicases superfamily AMD08_RS03780 SM00490 helicase superfamily c-terminal domain AMD08_RS03780 SM00847 Helicase associated domain (HA2) Add an annotation AMD08_RS03915 SM00422 helix_turn_helix, mercury resistance AMD08_RS03950 SM00448 cheY-homologous receiver domain AMD08_RS03950 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS03955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS03955 SM00387 Histidine kinase-like ATPases AMD08_RS03955 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS04100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD08_RS04105 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD08_RS04125 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS04155 SM00420 helix_turn_helix, Deoxyribose operon repressor AMD08_RS04155 SM01134 AMD08_RS04155 AMD08_RS04170 SM00882 Coenzyme A transferase AMD08_RS04175 SM00882 Coenzyme A transferase AMD08_RS04195 SM00998 Adenylosuccinate lyase C-terminus AMD08_RS04215 SM00346 helix_turn_helix isocitrate lyase regulation AMD08_RS04220 SM00090 RIO-like kinase AMD08_RS04235 SM01228 AMD08_RS04235 AMD08_RS04290 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD08_RS04290 SM00876 Biotin and Thiamin Synthesis associated domain AMD08_RS04310 SM00369 Leucine-rich repeats, typical (most populated) subfamily AMD08_RS04405 SM00382 ATPases associated with a variety of cellular activities AMD08_RS04465 SM00267 diguanylate cyclase AMD08_RS04475 SM00642 Alpha-amylase domain AMD08_RS04480 SM00642 Alpha-amylase domain AMD08_RS04490 SM00642 Alpha-amylase domain AMD08_RS04500 SM00642 Alpha-amylase domain AMD08_RS04550 SM00822 AMD08_RS04550 AMD08_RS04560 SM00487 DEAD-like helicases superfamily AMD08_RS04560 SM00490 helicase superfamily c-terminal domain AMD08_RS04570 SM00326 Src homology 3 domains AMD08_RS04575 SM00861 Transketolase, pyrimidine binding domain AMD08_RS04585 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AMD08_RS04605 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD08_RS04705 SM00271 DnaJ molecular chaperone homology domain AMD08_RS04725 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMD08_RS04745 SM00903 Flavin reductase like domain AMD08_RS04765 SM00100 Cyclic nucleotide-monophosphate binding domain AMD08_RS04765 SM00419 helix_turn_helix, cAMP Regulatory protein AMD08_RS04820 SM00387 Histidine kinase-like ATPases AMD08_RS04820 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS04820 SM00448 cheY-homologous receiver domain AMD08_RS04825 SM00052 Putative diguanylate phosphodiesterase AMD08_RS04825 SM00267 diguanylate cyclase AMD08_RS04825 SM00448 cheY-homologous receiver domain AMD08_RS04885 SM00563 Phosphate acyltransferases AMD08_RS04910 SM01209 AMD08_RS04910 AMD08_RS04910 SM01210 AMD08_RS04910 AMD08_RS04920 SM00798 AICARFT/IMPCHase bienzyme AMD08_RS04920 SM00851 MGS-like domain AMD08_RS04935 SM00195 Dual specificity phosphatase, catalytic domain AMD08_RS04955 SM00563 Phosphate acyltransferases AMD08_RS04980 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS05010 SM00878 Biotin carboxylase C-terminal domain AMD08_RS05040 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS05050 SM00234 in StAR and phosphatidylcholine transfer protein AMD08_RS05070 SM00883 Chaperonin 10 Kd subunit AMD08_RS05130 SM00944 Pro-kumamolisin, activation domain AMD08_RS05145 SM00867 YceI-like domain AMD08_RS05200 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD08_RS05210 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD08_RS05210 SM00895 AMD08_RS05210 AMD08_RS05230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS05230 SM00331 Sigma factor PP2C-like phosphatases AMD08_RS05275 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS05350 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD08_RS05380 SM00354 helix_turn _helix lactose operon repressor AMD08_RS05435 SM00869 Autotransporter beta-domain AMD08_RS05480 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS05585 SM00382 ATPases associated with a variety of cellular activities AMD08_RS05620 SM00318 Staphylococcal nuclease homologues AMD08_RS05630 SM00528 Domain in histone-like proteins of HNS family AMD08_RS05635 SM00642 Alpha-amylase domain AMD08_RS05650 SM00448 cheY-homologous receiver domain AMD08_RS05650 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS05655 SM00387 Histidine kinase-like ATPases AMD08_RS05655 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS05715 SM00382 ATPases associated with a variety of cellular activities AMD08_RS05715 SM00448 cheY-homologous receiver domain AMD08_RS05720 SM00387 Histidine kinase-like ATPases AMD08_RS05720 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS05730 SM00881 CoA binding domain AMD08_RS05740 SM01126 AMD08_RS05740 AMD08_RS05970 SM00448 cheY-homologous receiver domain AMD08_RS05975 SM00387 Histidine kinase-like ATPases AMD08_RS06070 SM00387 Histidine kinase-like ATPases AMD08_RS06090 SM00382 ATPases associated with a variety of cellular activities AMD08_RS06090 SM00994 ClpX C4-type zinc finger AMD08_RS06090 SM01086 C-terminal, D2-small domain, of ClpB protein AMD08_RS06095 SM00382 ATPases associated with a variety of cellular activities AMD08_RS06095 SM00464 Found in ATP-dependent protease La (LON) AMD08_RS06100 SM00411 bacterial (prokaryotic) histone like domain AMD08_RS06125 SM00257 Lysin motif AMD08_RS06130 SM00849 Metallo-beta-lactamase superfamily AMD08_RS06145 SM00479 AMD08_RS06145 AMD08_RS06150 SM00331 Sigma factor PP2C-like phosphatases AMD08_RS06150 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD08_RS06175 SM00849 Metallo-beta-lactamase superfamily AMD08_RS06180 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD08_RS06245 SM00382 ATPases associated with a variety of cellular activities AMD08_RS06255 SM00493 AMD08_RS06255 AMD08_RS06270 SM00460 Transglutaminase/protease-like homologues AMD08_RS06280 SM00382 ATPases associated with a variety of cellular activities AMD08_RS06330 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD08_RS06335 SM00822 AMD08_RS06335 AMD08_RS06345 SM00825 Beta-ketoacyl synthase AMD08_RS06380 SM00382 ATPases associated with a variety of cellular activities AMD08_RS06425 SM01359 AMD08_RS06425 AMD08_RS06425 SM01360 AMD08_RS06425 AMD08_RS06460 SM00271 DnaJ molecular chaperone homology domain AMD08_RS06465 SM00448 cheY-homologous receiver domain AMD08_RS06470 SM00244 prohibitin homologues AMD08_RS06475 SM00244 prohibitin homologues AMD08_RS06480 SM01321 AMD08_RS06480 AMD08_RS06485 SM00788 Adenylosuccinate synthetase AMD08_RS06500 SM00822 AMD08_RS06500 AMD08_RS06555 SM00220 Serine/Threonine protein kinases, catalytic domain AMD08_RS06575 SM00855 Phosphoglycerate mutase family AMD08_RS06630 SM00052 Putative diguanylate phosphodiesterase AMD08_RS06635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD08_RS06645 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD08_RS06650 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD08_RS06665 SM00974 AMD08_RS06665 AMD08_RS06685 SM00966 SpoVT / AbrB like domain AMD08_RS06705 SM00481 DNA polymerase alpha chain like domain AMD08_RS06715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD08_RS06750 SM00091 PAS domain AMD08_RS06750 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS06775 SM00487 DEAD-like helicases superfamily AMD08_RS06775 SM00490 helicase superfamily c-terminal domain AMD08_RS06775 SM00982 AMD08_RS06775 AMD08_RS06775 SM01058 CarD-like/TRCF domain AMD08_RS06790 SM00448 cheY-homologous receiver domain AMD08_RS06790 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS06795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS06795 SM00387 Histidine kinase-like ATPases AMD08_RS06795 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS06800 SM00645 Papain family cysteine protease AMD08_RS06870 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS06935 SM00829 Enoylreductase AMD08_RS06955 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS06955 SM00478 endonuclease III AMD08_RS06955 SM01009 AlkA N-terminal domain AMD08_RS07000 SM00487 DEAD-like helicases superfamily AMD08_RS07000 SM00490 helicase superfamily c-terminal domain AMD08_RS07005 SM00052 Putative diguanylate phosphodiesterase AMD08_RS07005 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS07005 SM00091 PAS domain AMD08_RS07005 SM00267 diguanylate cyclase AMD08_RS07010 SM00363 S4 RNA-binding domain AMD08_RS07015 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS07015 SM00267 diguanylate cyclase AMD08_RS07050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS07050 SM00387 Histidine kinase-like ATPases AMD08_RS07050 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS07055 SM00448 cheY-homologous receiver domain AMD08_RS07055 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS07085 SM00382 ATPases associated with a variety of cellular activities AMD08_RS07220 SM00316 Ribosomal protein S1-like RNA-binding domain AMD08_RS07255 SM01351 AMD08_RS07255 AMD08_RS07270 SM00977 TilS substrate C-terminal domain AMD08_RS07275 SM00098 Alkaline phosphatase homologues AMD08_RS07330 SM01160 AMD08_RS07330 AMD08_RS07395 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD08_RS07425 SM00257 Lysin motif AMD08_RS07455 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD08_RS07530 SM00052 Putative diguanylate phosphodiesterase AMD08_RS07530 SM00267 diguanylate cyclase AMD08_RS07530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS07545 SM00822 AMD08_RS07545 AMD08_RS07590 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD08_RS07595 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD08_RS07645 SM00316 Ribosomal protein S1-like RNA-binding domain AMD08_RS07645 SM00322 K homology RNA-binding domain AMD08_RS07665 SM01387 AMD08_RS07665 AMD08_RS07670 SM00316 Ribosomal protein S1-like RNA-binding domain AMD08_RS07670 SM00322 K homology RNA-binding domain AMD08_RS07690 SM01001 AIR carboxylase AMD08_RS07815 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS07855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS07860 SM00421 helix_turn_helix, Lux Regulon AMD08_RS07860 SM00448 cheY-homologous receiver domain AMD08_RS07865 SM00387 Histidine kinase-like ATPases AMD08_RS07870 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS07915 SM00448 cheY-homologous receiver domain AMD08_RS07940 SM00052 Putative diguanylate phosphodiesterase AMD08_RS07945 SM00869 Autotransporter beta-domain AMD08_RS07950 SM00421 helix_turn_helix, Lux Regulon AMD08_RS07950 SM00448 cheY-homologous receiver domain AMD08_RS07955 SM00387 Histidine kinase-like ATPases AMD08_RS07955 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS07980 SM00869 Autotransporter beta-domain AMD08_RS08000 SM00448 cheY-homologous receiver domain AMD08_RS08000 SM00850 LytTr DNA-binding domain AMD08_RS08150 SM01034 Sensors of blue-light using FAD AMD08_RS08190 SM00363 S4 RNA-binding domain AMD08_RS08195 SM00316 Ribosomal protein S1-like RNA-binding domain AMD08_RS08200 SM00421 helix_turn_helix, Lux Regulon AMD08_RS08200 SM00448 cheY-homologous receiver domain AMD08_RS08205 SM00450 Rhodanese Homology Domain AMD08_RS08225 SM00984 UDP binding domain AMD08_RS08260 SM00823 Phosphopantetheine attachment site AMD08_RS08305 SM00382 ATPases associated with a variety of cellular activities AMD08_RS08315 SM00155 Phospholipase D. Active site motifs. AMD08_RS08325 SM00490 helicase superfamily c-terminal domain AMD08_RS08335 SM00490 helicase superfamily c-terminal domain AMD08_RS08340 SM00382 ATPases associated with a variety of cellular activities AMD08_RS08350 SM00487 DEAD-like helicases superfamily AMD08_RS08365 SM00382 ATPases associated with a variety of cellular activities AMD08_RS08420 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD08_RS08420 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD08_RS08420 SM00493 AMD08_RS08420 AMD08_RS08500 SM00487 DEAD-like helicases superfamily AMD08_RS08625 SM00953 AMD08_RS08625 AMD08_RS08685 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS08695 SM00382 ATPases associated with a variety of cellular activities AMD08_RS08720 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD08_RS08720 SM00465 GIY-YIG type nucleases (URI domain) AMD08_RS08730 SM00226 Low molecular weight phosphatase family AMD08_RS08745 SM00382 ATPases associated with a variety of cellular activities AMD08_RS08760 SM00849 Metallo-beta-lactamase superfamily AMD08_RS08770 SM00382 ATPases associated with a variety of cellular activities AMD08_RS08820 SM00382 ATPases associated with a variety of cellular activities AMD08_RS08905 SM00448 cheY-homologous receiver domain AMD08_RS08910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS08910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS08910 SM00091 PAS domain AMD08_RS08910 SM00387 Histidine kinase-like ATPases AMD08_RS08910 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS08910 SM00448 cheY-homologous receiver domain AMD08_RS08915 SM00316 Ribosomal protein S1-like RNA-binding domain AMD08_RS08915 SM00732 Likely ribonuclease with RNase H fold. AMD08_RS08985 SM00479 AMD08_RS08985 AMD08_RS08995 SM00529 Helix-turn-helix diphteria tox regulatory element AMD08_RS09020 SM00852 Probable molybdopterin binding domain AMD08_RS09065 SM00450 Rhodanese Homology Domain AMD08_RS09070 SM00852 Probable molybdopterin binding domain AMD08_RS09075 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09080 SM00564 beta-propeller repeat AMD08_RS09095 SM00028 Tetratricopeptide repeats AMD08_RS09105 SM00562 AMD08_RS09105 AMD08_RS09135 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09155 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09155 SM00843 AMD08_RS09155 AMD08_RS09175 SM00316 Ribosomal protein S1-like RNA-binding domain AMD08_RS09180 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09180 SM01086 C-terminal, D2-small domain, of ClpB protein AMD08_RS09205 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS09215 SM00052 Putative diguanylate phosphodiesterase AMD08_RS09215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS09215 SM00091 PAS domain AMD08_RS09215 SM00267 diguanylate cyclase AMD08_RS09220 SM00091 PAS domain AMD08_RS09220 SM00387 Histidine kinase-like ATPases AMD08_RS09225 SM00052 Putative diguanylate phosphodiesterase AMD08_RS09225 SM00267 diguanylate cyclase AMD08_RS09225 SM00448 cheY-homologous receiver domain AMD08_RS09230 SM00387 Histidine kinase-like ATPases AMD08_RS09245 SM00858 AMD08_RS09245 AMD08_RS09250 SM00260 Two component signalling adaptor domain AMD08_RS09250 SM00448 cheY-homologous receiver domain AMD08_RS09295 SM00047 Lysozyme subfamily 2 AMD08_RS09335 SM00421 helix_turn_helix, Lux Regulon AMD08_RS09335 SM00448 cheY-homologous receiver domain AMD08_RS09345 SM00448 cheY-homologous receiver domain AMD08_RS09350 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09375 SM00822 AMD08_RS09375 AMD08_RS09425 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09480 SM00267 diguanylate cyclase AMD08_RS09490 SM00267 diguanylate cyclase AMD08_RS09495 SM00052 Putative diguanylate phosphodiesterase AMD08_RS09495 SM00267 diguanylate cyclase AMD08_RS09510 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09510 SM00962 SRP54-type protein, GTPase domain AMD08_RS09525 SM00448 cheY-homologous receiver domain AMD08_RS09535 SM00073 Histidine Phosphotransfer domain AMD08_RS09535 SM00260 Two component signalling adaptor domain AMD08_RS09535 SM00387 Histidine kinase-like ATPases AMD08_RS09535 SM01231 AMD08_RS09535 AMD08_RS09555 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS09590 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09760 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD08_RS09760 SM01240 AMD08_RS09760 AMD08_RS09785 SM00822 AMD08_RS09785 AMD08_RS09795 SM00028 Tetratricopeptide repeats AMD08_RS09805 SM00411 bacterial (prokaryotic) histone like domain AMD08_RS09810 SM00316 Ribosomal protein S1-like RNA-binding domain AMD08_RS09885 SM00354 helix_turn _helix lactose operon repressor AMD08_RS09910 SM00363 S4 RNA-binding domain AMD08_RS09935 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09985 SM00357 Cold shock protein domain AMD08_RS09990 SM00382 ATPases associated with a variety of cellular activities AMD08_RS09995 SM00382 ATPases associated with a variety of cellular activities AMD08_RS10025 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD08_RS10035 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD08_RS10050 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD08_RS10090 SM00840 AMD08_RS10090 AMD08_RS10115 SM01234 AMD08_RS10115 AMD08_RS10155 SM00849 Metallo-beta-lactamase superfamily AMD08_RS10210 SM00841 Elongation factor P, C-terminal AMD08_RS10210 SM01185 AMD08_RS10210 AMD08_RS10220 SM00052 Putative diguanylate phosphodiesterase AMD08_RS10220 SM00267 diguanylate cyclase AMD08_RS10220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS10255 SM00382 ATPases associated with a variety of cellular activities AMD08_RS10260 SM00487 DEAD-like helicases superfamily AMD08_RS10260 SM00490 helicase superfamily c-terminal domain AMD08_RS10285 SM00357 Cold shock protein domain AMD08_RS10290 SM01322 AMD08_RS10290 AMD08_RS10300 SM00052 Putative diguanylate phosphodiesterase AMD08_RS10300 SM00267 diguanylate cyclase AMD08_RS10315 SM00822 AMD08_RS10315 AMD08_RS10335 SM00853 MutL C terminal dimerisation domain AMD08_RS10335 SM01340 AMD08_RS10335 AMD08_RS10340 SM00646 AMD08_RS10340 AMD08_RS10375 SM00474 3'-5' exonuclease AMD08_RS10390 SM00528 Domain in histone-like proteins of HNS family AMD08_RS10475 SM00857 Resolvase, N terminal domain AMD08_RS10545 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS10545 SM00267 diguanylate cyclase AMD08_RS10550 SM00260 Two component signalling adaptor domain AMD08_RS10555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS10555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS10565 SM00487 DEAD-like helicases superfamily AMD08_RS10565 SM00490 helicase superfamily c-terminal domain AMD08_RS10620 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD08_RS10645 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD08_RS10645 SM01091 Transporter associated domain AMD08_RS10680 SM00382 ATPases associated with a variety of cellular activities AMD08_RS10710 SM01230 AMD08_RS10710 AMD08_RS10720 SM01230 AMD08_RS10720 AMD08_RS10730 SM00267 diguanylate cyclase AMD08_RS10730 SM00448 cheY-homologous receiver domain AMD08_RS10785 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS10785 SM00091 PAS domain AMD08_RS10785 SM00387 Histidine kinase-like ATPases AMD08_RS10785 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS10785 SM00448 cheY-homologous receiver domain AMD08_RS10785 SM01079 AMD08_RS10785 AMD08_RS10790 SM00448 cheY-homologous receiver domain AMD08_RS10790 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD08_RS10820 SM00354 helix_turn _helix lactose operon repressor AMD08_RS10880 SM01323 AMD08_RS10880 AMD08_RS10895 SM00344 helix_turn_helix ASNC type AMD08_RS10975 SM00387 Histidine kinase-like ATPases AMD08_RS11020 SM00944 Pro-kumamolisin, activation domain AMD08_RS11070 SM01130 AMD08_RS11070 AMD08_RS11095 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS11100 SM00382 ATPases associated with a variety of cellular activities AMD08_RS11100 SM00962 SRP54-type protein, GTPase domain AMD08_RS11100 SM00963 SRP54-type protein, helical bundle domain AMD08_RS11105 SM00478 endonuclease III AMD08_RS11115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS11115 SM00091 PAS domain AMD08_RS11115 SM00387 Histidine kinase-like ATPases AMD08_RS11115 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS11115 SM00448 cheY-homologous receiver domain AMD08_RS11130 SM00465 GIY-YIG type nucleases (URI domain) AMD08_RS11160 SM00507 HNH nucleases AMD08_RS11165 SM00861 Transketolase, pyrimidine binding domain AMD08_RS11190 SM00849 Metallo-beta-lactamase superfamily AMD08_RS11275 SM00422 helix_turn_helix, mercury resistance AMD08_RS11280 SM00411 bacterial (prokaryotic) histone like domain AMD08_RS11285 SM00873 B3/4 domain AMD08_RS11285 SM00874 tRNA synthetase B5 domain AMD08_RS11285 SM00896 Ferredoxin-fold anticodon binding domain AMD08_RS11310 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD08_RS11315 SM00354 helix_turn _helix lactose operon repressor AMD08_RS11320 SM00642 Alpha-amylase domain AMD08_RS11350 SM00642 Alpha-amylase domain AMD08_RS11390 SM00758 AMD08_RS11390 AMD08_RS11435 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD08_RS11460 SM01130 AMD08_RS11460 AMD08_RS11480 SM00670 Large family of predicted nucleotide-binding domains AMD08_RS11535 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS11535 SM00091 PAS domain AMD08_RS11535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS11550 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD08_RS11560 SM00382 ATPases associated with a variety of cellular activities AMD08_RS11600 SM00382 ATPases associated with a variety of cellular activities AMD08_RS11610 SM01103 AMD08_RS11610 AMD08_RS11620 SM00257 Lysin motif AMD08_RS11640 SM00463 Small MutS-related domain AMD08_RS11665 SM01192 AMD08_RS11665 AMD08_RS11665 SM01193 AMD08_RS11665 AMD08_RS11690 SM00387 Histidine kinase-like ATPases AMD08_RS11690 SM00433 TopoisomeraseII AMD08_RS11715 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD08_RS11715 SM01091 Transporter associated domain AMD08_RS11740 SM00382 ATPases associated with a variety of cellular activities AMD08_RS11750 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD08_RS11905 SM00091 PAS domain AMD08_RS11905 SM00387 Histidine kinase-like ATPases AMD08_RS11905 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS11905 SM00448 cheY-homologous receiver domain AMD08_RS11910 SM00382 ATPases associated with a variety of cellular activities AMD08_RS11915 SM00448 cheY-homologous receiver domain AMD08_RS11920 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS11920 SM00091 PAS domain AMD08_RS11920 SM00387 Histidine kinase-like ATPases AMD08_RS11920 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS11920 SM00448 cheY-homologous receiver domain AMD08_RS11935 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD08_RS11945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS11945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS11975 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS12040 SM00966 SpoVT / AbrB like domain AMD08_RS12085 SM00736 Dystroglycan-type cadherin-like domains. AMD08_RS12100 SM00382 ATPases associated with a variety of cellular activities AMD08_RS12275 SM00220 Serine/Threonine protein kinases, catalytic domain AMD08_RS12305 SM00260 Two component signalling adaptor domain AMD08_RS12315 SM00448 cheY-homologous receiver domain AMD08_RS12320 SM00073 Histidine Phosphotransfer domain AMD08_RS12320 SM00260 Two component signalling adaptor domain AMD08_RS12320 SM00387 Histidine kinase-like ATPases AMD08_RS12320 SM01231 AMD08_RS12320 AMD08_RS12325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12335 SM01049 AMD08_RS12335 AMD08_RS12340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12395 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12405 SM00260 Two component signalling adaptor domain AMD08_RS12415 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS12415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS12420 SM00138 Methyltransferase, chemotaxis proteins AMD08_RS12430 SM00448 cheY-homologous receiver domain AMD08_RS12435 SM00052 Putative diguanylate phosphodiesterase AMD08_RS12435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS12435 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS12435 SM00091 PAS domain AMD08_RS12435 SM00267 diguanylate cyclase AMD08_RS12455 SM00966 SpoVT / AbrB like domain AMD08_RS12480 SM00073 Histidine Phosphotransfer domain AMD08_RS12480 SM00387 Histidine kinase-like ATPases AMD08_RS12480 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS12480 SM00448 cheY-homologous receiver domain AMD08_RS12485 SM00448 cheY-homologous receiver domain AMD08_RS12485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD08_RS12495 SM00937 AMD08_RS12495 AMD08_RS12500 SM00850 LytTr DNA-binding domain AMD08_RS12560 SM00851 MGS-like domain AMD08_RS12560 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD08_RS12570 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMD08_RS12605 SM00899 AMD08_RS12605 AMD08_RS12625 SM00822 AMD08_RS12625 AMD08_RS12630 SM00841 Elongation factor P, C-terminal AMD08_RS12630 SM01185 AMD08_RS12630 AMD08_RS12675 SM01007 Class II Aldolase and Adducin N-terminal domain AMD08_RS12750 SM00100 Cyclic nucleotide-monophosphate binding domain AMD08_RS12750 SM00419 helix_turn_helix, cAMP Regulatory protein AMD08_RS12795 SM00912 haemagglutination activity domain AMD08_RS12870 SM00014 Acid phosphatase homologues AMD08_RS12880 SM00387 Histidine kinase-like ATPases AMD08_RS12885 SM00448 cheY-homologous receiver domain AMD08_RS12895 SM00052 Putative diguanylate phosphodiesterase AMD08_RS12895 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS12895 SM00267 diguanylate cyclase AMD08_RS12965 SM00646 AMD08_RS12965 AMD08_RS12970 SM00642 Alpha-amylase domain AMD08_RS13015 SM00382 ATPases associated with a variety of cellular activities AMD08_RS13075 SM00487 DEAD-like helicases superfamily AMD08_RS13075 SM00490 helicase superfamily c-terminal domain AMD08_RS13180 SM00830 Chorismate mutase type II AMD08_RS13200 SM00240 Forkhead associated domain AMD08_RS13225 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD08_RS13225 SM00866 AMD08_RS13225 AMD08_RS13265 SM00434 DNA Topoisomerase IV AMD08_RS13285 SM00292 breast cancer carboxy-terminal domain AMD08_RS13285 SM00532 Ligase N family AMD08_RS13300 SM00771 ZipA, C-terminal domain (FtsZ-binding) AMD08_RS13305 SM00968 SMC proteins Flexible Hinge Domain AMD08_RS13365 SM00421 helix_turn_helix, Lux Regulon AMD08_RS13365 SM00448 cheY-homologous receiver domain AMD08_RS13410 SM00947 Carbonic anhydrase AMD08_RS13435 SM00479 AMD08_RS13435 AMD08_RS13465 SM00981 AMD08_RS13465 AMD08_RS13470 SM00382 ATPases associated with a variety of cellular activities AMD08_RS13490 SM00644 AMD08_RS13490 AMD08_RS13500 SM00450 Rhodanese Homology Domain AMD08_RS13525 SM00478 endonuclease III AMD08_RS13535 SM00947 Carbonic anhydrase AMD08_RS13570 SM00382 ATPases associated with a variety of cellular activities AMD08_RS13585 SM00479 AMD08_RS13585 AMD08_RS13590 SM00267 diguanylate cyclase AMD08_RS13595 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD08_RS13605 SM00316 Ribosomal protein S1-like RNA-binding domain AMD08_RS13605 SM00357 Cold shock protein domain AMD08_RS13605 SM00955 AMD08_RS13605 AMD08_RS13625 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMD08_RS13635 SM01018 B12 binding domain AMD08_RS13655 SM00354 helix_turn _helix lactose operon repressor AMD08_RS13675 SM00984 UDP binding domain AMD08_RS13690 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD08_RS13695 SM00382 ATPases associated with a variety of cellular activities AMD08_RS13725 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD08_RS13725 SM01091 Transporter associated domain AMD08_RS13745 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD08_RS13755 SM00861 Transketolase, pyrimidine binding domain AMD08_RS13780 SM00382 ATPases associated with a variety of cellular activities AMD08_RS13820 SM00271 DnaJ molecular chaperone homology domain AMD08_RS13915 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS13945 SM00528 Domain in histone-like proteins of HNS family AMD08_RS13960 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS13975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS13975 SM00267 diguanylate cyclase AMD08_RS13985 SM00267 diguanylate cyclase AMD08_RS14100 SM00357 Cold shock protein domain AMD08_RS14115 SM00947 Carbonic anhydrase AMD08_RS14130 SM00382 ATPases associated with a variety of cellular activities AMD08_RS14150 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD08_RS14180 SM00631 AMD08_RS14180 AMD08_RS14185 SM01217 AMD08_RS14185 AMD08_RS14210 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD08_RS14215 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS14220 SM00434 DNA Topoisomerase IV AMD08_RS14250 SM00710 Parallel beta-helix repeats AMD08_RS14250 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AMD08_RS14255 SM01172 AMD08_RS14255 AMD08_RS14275 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD08_RS14285 SM00972 Spore Coat Protein U domain AMD08_RS14300 SM00972 Spore Coat Protein U domain AMD08_RS14325 SM00267 diguanylate cyclase AMD08_RS14355 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD08_RS14395 SM00481 DNA polymerase alpha chain like domain AMD08_RS14480 SM00382 ATPases associated with a variety of cellular activities AMD08_RS14680 SM00671 Sel1-like repeats. AMD08_RS14680 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD08_RS14685 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD08_RS14690 SM00869 Autotransporter beta-domain AMD08_RS14710 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS14710 SM00267 diguanylate cyclase AMD08_RS14740 SM00487 DEAD-like helicases superfamily AMD08_RS14740 SM00490 helicase superfamily c-terminal domain AMD08_RS14755 SM00357 Cold shock protein domain AMD08_RS14790 SM01118 AMD08_RS14790 AMD08_RS14800 SM00448 cheY-homologous receiver domain AMD08_RS14815 SM00358 Double-stranded RNA binding motif AMD08_RS14815 SM00535 Ribonuclease III family AMD08_RS14830 SM00838 Elongation factor G C-terminus AMD08_RS14835 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD08_RS14885 SM00530 Helix-turn-helix XRE-family like proteins AMD08_RS14910 SM00812 Alpha-L-fucosidase AMD08_RS14930 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMD08_RS14930 SM00534 ATPase domain of DNA mismatch repair MUTS family AMD08_RS15000 SM00382 ATPases associated with a variety of cellular activities AMD08_RS15000 SM00962 SRP54-type protein, GTPase domain AMD08_RS15000 SM00963 SRP54-type protein, helical bundle domain AMD08_RS15020 SM00813 Alpha-L-arabinofuranosidase C-terminus AMD08_RS15030 SM00448 cheY-homologous receiver domain AMD08_RS15035 SM00091 PAS domain AMD08_RS15035 SM00387 Histidine kinase-like ATPases AMD08_RS15035 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS15040 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS15040 SM00387 Histidine kinase-like ATPases AMD08_RS15040 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS15040 SM00448 cheY-homologous receiver domain AMD08_RS15045 SM00138 Methyltransferase, chemotaxis proteins AMD08_RS15055 SM00387 Histidine kinase-like ATPases AMD08_RS15055 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS15055 SM00448 cheY-homologous receiver domain AMD08_RS15080 SM00387 Histidine kinase-like ATPases AMD08_RS15080 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS15080 SM00448 cheY-homologous receiver domain AMD08_RS15085 SM00387 Histidine kinase-like ATPases AMD08_RS15085 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS15120 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS15125 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS15135 SM00382 ATPases associated with a variety of cellular activities AMD08_RS15140 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD08_RS15185 SM00904 Riboflavin kinase AMD08_RS15270 SM00244 prohibitin homologues AMD08_RS15290 SM00478 endonuclease III AMD08_RS15305 SM00421 helix_turn_helix, Lux Regulon AMD08_RS15305 SM00448 cheY-homologous receiver domain AMD08_RS15345 SM00387 Histidine kinase-like ATPases AMD08_RS15345 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS15350 SM00448 cheY-homologous receiver domain AMD08_RS15350 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS15400 SM01060 AMD08_RS15400 AMD08_RS15430 SM00073 Histidine Phosphotransfer domain AMD08_RS15430 SM00260 Two component signalling adaptor domain AMD08_RS15430 SM00387 Histidine kinase-like ATPases AMD08_RS15430 SM01231 AMD08_RS15430 AMD08_RS15435 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS15435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS15440 SM00260 Two component signalling adaptor domain AMD08_RS15445 SM00052 Putative diguanylate phosphodiesterase AMD08_RS15445 SM00448 cheY-homologous receiver domain AMD08_RS15450 SM00138 Methyltransferase, chemotaxis proteins AMD08_RS15455 SM00448 cheY-homologous receiver domain AMD08_RS15460 SM00155 Phospholipase D. Active site motifs. AMD08_RS15475 SM00855 Phosphoglycerate mutase family AMD08_RS15525 SM00248 ankyrin repeats AMD08_RS15565 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD08_RS15570 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD08_RS15580 SM00829 Enoylreductase AMD08_RS15585 SM00267 diguanylate cyclase AMD08_RS15650 SM00732 Likely ribonuclease with RNase H fold. AMD08_RS15685 SM00382 ATPases associated with a variety of cellular activities AMD08_RS15700 SM00411 bacterial (prokaryotic) histone like domain AMD08_RS15730 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AMD08_RS15745 SM00382 ATPases associated with a variety of cellular activities AMD08_RS15775 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD08_RS15780 SM00671 Sel1-like repeats. AMD08_RS15810 SM00054 EF-hand, calcium binding motif AMD08_RS15900 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD08_RS15920 SM00382 ATPases associated with a variety of cellular activities AMD08_RS15965 SM00924 MgtE intracellular N domain AMD08_RS15995 SM00656 AMD08_RS15995 AMD08_RS16010 SM00421 helix_turn_helix, Lux Regulon AMD08_RS16035 SM00849 Metallo-beta-lactamase superfamily AMD08_RS16045 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD08_RS16065 SM00422 helix_turn_helix, mercury resistance AMD08_RS16205 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS16215 SM00387 Histidine kinase-like ATPases AMD08_RS16215 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS16215 SM00448 cheY-homologous receiver domain AMD08_RS16220 SM00387 Histidine kinase-like ATPases AMD08_RS16220 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS16220 SM00448 cheY-homologous receiver domain AMD08_RS16230 SM00387 Histidine kinase-like ATPases AMD08_RS16230 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS16230 SM00448 cheY-homologous receiver domain AMD08_RS16235 SM00867 YceI-like domain AMD08_RS16245 SM00867 YceI-like domain AMD08_RS16300 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD08_RS16430 SM00812 Alpha-L-fucosidase AMD08_RS16435 SM00636 AMD08_RS16435 AMD08_RS16450 SM00758 AMD08_RS16450 AMD08_RS16450 SM01217 AMD08_RS16450 AMD08_RS16480 SM01149 AMD08_RS16480 AMD08_RS16540 SM00260 Two component signalling adaptor domain AMD08_RS16550 SM00073 Histidine Phosphotransfer domain AMD08_RS16550 SM00260 Two component signalling adaptor domain AMD08_RS16550 SM00387 Histidine kinase-like ATPases AMD08_RS16550 SM00448 cheY-homologous receiver domain AMD08_RS16550 SM01231 AMD08_RS16550 AMD08_RS16555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS16560 SM00260 Two component signalling adaptor domain AMD08_RS16565 SM00448 cheY-homologous receiver domain AMD08_RS16570 SM00448 cheY-homologous receiver domain AMD08_RS16595 SM00491 AMD08_RS16595 AMD08_RS16620 SM00954 Region found in RelA / SpoT proteins AMD08_RS16665 SM00382 ATPases associated with a variety of cellular activities AMD08_RS16665 SM00487 DEAD-like helicases superfamily AMD08_RS16665 SM00490 helicase superfamily c-terminal domain AMD08_RS16665 SM00847 Helicase associated domain (HA2) Add an annotation AMD08_RS16675 SM00341 Helicase and RNase D C-terminal AMD08_RS16675 SM00487 DEAD-like helicases superfamily AMD08_RS16675 SM00490 helicase superfamily c-terminal domain AMD08_RS16675 SM00956 AMD08_RS16675 AMD08_RS16685 SM00448 cheY-homologous receiver domain AMD08_RS16710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS16710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS16725 SM00448 cheY-homologous receiver domain AMD08_RS16730 SM00091 PAS domain AMD08_RS16730 SM00911 HWE histidine kinase AMD08_RS16785 SM00382 ATPases associated with a variety of cellular activities AMD08_RS16800 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD08_RS16835 SM00834 Putative regulatory protein AMD08_RS16875 SM00382 ATPases associated with a variety of cellular activities AMD08_RS16980 SM00855 Phosphoglycerate mutase family AMD08_RS17030 SM00382 ATPases associated with a variety of cellular activities AMD08_RS17030 SM01086 C-terminal, D2-small domain, of ClpB protein AMD08_RS17035 SM00382 ATPases associated with a variety of cellular activities AMD08_RS17045 SM00062 Bacterial periplasmic substrate-binding proteins AMD08_RS17120 SM00564 beta-propeller repeat AMD08_RS17125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS17230 SM00382 ATPases associated with a variety of cellular activities AMD08_RS17285 SM01329 AMD08_RS17285 AMD08_RS17305 SM00448 cheY-homologous receiver domain AMD08_RS17305 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS17310 SM00387 Histidine kinase-like ATPases AMD08_RS17310 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS17330 SM00014 Acid phosphatase homologues AMD08_RS17380 SM00855 Phosphoglycerate mutase family AMD08_RS17405 SM00829 Enoylreductase AMD08_RS17415 SM00382 ATPases associated with a variety of cellular activities AMD08_RS17465 SM00829 Enoylreductase AMD08_RS17495 SM00838 Elongation factor G C-terminus AMD08_RS17540 SM00662 RNA polymerases D AMD08_RS17545 SM00363 S4 RNA-binding domain AMD08_RS17545 SM01390 AMD08_RS17545 AMD08_RS17605 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD08_RS17610 SM01374 AMD08_RS17610 AMD08_RS17630 SM00322 K homology RNA-binding domain AMD08_RS17645 SM01382 AMD08_RS17645 AMD08_RS17645 SM01383 AMD08_RS17645 AMD08_RS17665 SM01403 AMD08_RS17665 AMD08_RS17675 SM00838 Elongation factor G C-terminus AMD08_RS17675 SM00889 Elongation factor G, domain IV AMD08_RS17690 SM00663 RNA polymerase I subunit A N-terminus AMD08_RS17715 SM00649 Ribosomal protein L11/L12 AMD08_RS17720 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMD08_RS17720 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD08_RS17770 SM01400 AMD08_RS17770 AMD08_RS17790 SM00028 Tetratricopeptide repeats AMD08_RS17800 SM00937 AMD08_RS17800 AMD08_RS17805 SM00028 Tetratricopeptide repeats AMD08_RS17810 SM00852 Probable molybdopterin binding domain AMD08_RS17920 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMD08_RS17920 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMD08_RS17950 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD08_RS17950 SM00475 5'-3' exonuclease AMD08_RS18015 SM00421 helix_turn_helix, Lux Regulon AMD08_RS18020 SM00387 Histidine kinase-like ATPases AMD08_RS18020 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS18020 SM00448 cheY-homologous receiver domain AMD08_RS18025 SM00448 cheY-homologous receiver domain AMD08_RS18100 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD08_RS18135 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD08_RS18135 SM00895 AMD08_RS18135 AMD08_RS18200 SM00650 Ribosomal RNA adenine dimethylases AMD08_RS18215 SM00382 ATPases associated with a variety of cellular activities AMD08_RS18275 SM00382 ATPases associated with a variety of cellular activities AMD08_RS18285 SM00382 ATPases associated with a variety of cellular activities AMD08_RS18335 SM00387 Histidine kinase-like ATPases AMD08_RS18335 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS18340 SM00448 cheY-homologous receiver domain AMD08_RS18340 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS18350 SM00382 ATPases associated with a variety of cellular activities AMD08_RS18370 SM00382 ATPases associated with a variety of cellular activities AMD08_RS18485 SM00996 S-adenosyl-L-homocysteine hydrolase AMD08_RS18485 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD08_RS18520 SM00642 Alpha-amylase domain AMD08_RS18535 SM00944 Pro-kumamolisin, activation domain AMD08_RS18540 SM00829 Enoylreductase AMD08_RS18565 SM00957 SecA DEAD-like domain AMD08_RS18565 SM00958 SecA preprotein cross-linking domain AMD08_RS18585 SM00864 Tubulin/FtsZ family, GTPase domain AMD08_RS18585 SM00865 Tubulin/FtsZ family, C-terminal domain AMD08_RS18590 SM00842 Cell division protein FtsA AMD08_RS18705 SM00448 cheY-homologous receiver domain AMD08_RS18705 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS18710 SM00387 Histidine kinase-like ATPases AMD08_RS18710 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS18740 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD08_RS18800 SM00382 ATPases associated with a variety of cellular activities AMD08_RS18820 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD08_RS18840 SM00829 Enoylreductase AMD08_RS18860 SM00448 cheY-homologous receiver domain AMD08_RS18860 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS18865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS18865 SM00387 Histidine kinase-like ATPases AMD08_RS18865 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS18875 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS18880 SM00849 Metallo-beta-lactamase superfamily AMD08_RS18945 SM00354 helix_turn _helix lactose operon repressor AMD08_RS18955 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD08_RS18955 SM00866 AMD08_RS18955 AMD08_RS19025 SM00382 ATPases associated with a variety of cellular activities AMD08_RS19050 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD08_RS19080 SM00387 Histidine kinase-like ATPases AMD08_RS19080 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS19080 SM00448 cheY-homologous receiver domain AMD08_RS19085 SM00448 cheY-homologous receiver domain AMD08_RS19090 SM00387 Histidine kinase-like ATPases AMD08_RS19090 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS19095 SM00749 bacterial OsmY and nodulation domain AMD08_RS19105 SM01350 AMD08_RS19105 AMD08_RS19160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD08_RS19160 SM00245 tail specific protease AMD08_RS19165 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD08_RS19185 SM00936 Penicillin-binding protein 5, C-terminal domain AMD08_RS19205 SM00710 Parallel beta-helix repeats AMD08_RS19230 SM00268 Actin AMD08_RS19240 SM00382 ATPases associated with a variety of cellular activities AMD08_RS19250 SM00829 Enoylreductase AMD08_RS19265 SM00062 Bacterial periplasmic substrate-binding proteins AMD08_RS19265 SM00248 ankyrin repeats AMD08_RS19270 SM00564 beta-propeller repeat AMD08_RS19290 SM01263 AMD08_RS19290 AMD08_RS19295 SM00267 diguanylate cyclase AMD08_RS19325 SM00382 ATPases associated with a variety of cellular activities AMD08_RS19325 SM01086 C-terminal, D2-small domain, of ClpB protein AMD08_RS19405 SM00448 cheY-homologous receiver domain AMD08_RS19405 SM00850 LytTr DNA-binding domain AMD08_RS19435 SM00267 diguanylate cyclase AMD08_RS19450 SM00637 AMD08_RS19450 AMD08_RS19455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS19455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS19455 SM01049 AMD08_RS19455 AMD08_RS19460 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS19460 SM00091 PAS domain AMD08_RS19460 SM00267 diguanylate cyclase AMD08_RS19470 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS19485 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD08_RS19485 SM01232 AMD08_RS19485 AMD08_RS19525 SM00382 ATPases associated with a variety of cellular activities AMD08_RS19535 SM00062 Bacterial periplasmic substrate-binding proteins AMD08_RS19660 SM00387 Histidine kinase-like ATPases AMD08_RS19660 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS19670 SM00382 ATPases associated with a variety of cellular activities AMD08_RS19745 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS19745 SM00387 Histidine kinase-like ATPases AMD08_RS19780 SM00506 Appr-1"-p processing enzyme AMD08_RS19820 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD08_RS19845 SM00849 Metallo-beta-lactamase superfamily AMD08_RS19860 SM00382 ATPases associated with a variety of cellular activities AMD08_RS19930 SM00861 Transketolase, pyrimidine binding domain AMD08_RS19945 SM00028 Tetratricopeptide repeats AMD08_RS19945 SM00327 von Willebrand factor (vWF) type A domain AMD08_RS19950 SM00327 von Willebrand factor (vWF) type A domain AMD08_RS19965 SM00382 ATPases associated with a variety of cellular activities AMD08_RS19970 SM00965 Secretin and TonB N terminus short domain AMD08_RS20020 SM00487 DEAD-like helicases superfamily AMD08_RS20020 SM00490 helicase superfamily c-terminal domain AMD08_RS20030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD08_RS20030 SM00954 Region found in RelA / SpoT proteins AMD08_RS20035 SM01409 AMD08_RS20035 AMD08_RS20040 SM00072 Guanylate kinase homologues. AMD08_RS20065 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD08_RS20090 SM01011 Aminopeptidase P, N-terminal domain AMD08_RS20160 SM00028 Tetratricopeptide repeats AMD08_RS20160 SM00382 ATPases associated with a variety of cellular activities AMD08_RS20160 SM00421 helix_turn_helix, Lux Regulon AMD08_RS20230 SM00464 Found in ATP-dependent protease La (LON) AMD08_RS20280 SM00342 helix_turn_helix, arabinose operon control protein AMD08_RS20285 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS20300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS20330 SM00917 LeuA allosteric (dimerisation) domain AMD08_RS20335 SM01329 AMD08_RS20335 AMD08_RS20355 SM00267 diguanylate cyclase AMD08_RS20405 SM00919 Malic enzyme, NAD binding domain AMD08_RS20405 SM01274 AMD08_RS20405 AMD08_RS20420 SM00387 Histidine kinase-like ATPases AMD08_RS20420 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS20420 SM00448 cheY-homologous receiver domain AMD08_RS20455 SM00421 helix_turn_helix, Lux Regulon AMD08_RS20455 SM00448 cheY-homologous receiver domain AMD08_RS20465 SM00387 Histidine kinase-like ATPases AMD08_RS20465 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS20470 SM00448 cheY-homologous receiver domain AMD08_RS20470 SM00862 Transcriptional regulatory protein, C terminal AMD08_RS20485 SM00822 AMD08_RS20485 AMD08_RS20490 SM00354 helix_turn _helix lactose operon repressor AMD08_RS20505 SM00642 Alpha-amylase domain AMD08_RS20515 SM01154 AMD08_RS20515 AMD08_RS20550 SM00450 Rhodanese Homology Domain AMD08_RS20695 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD08_RS20695 SM00866 AMD08_RS20695 AMD08_RS20755 SM00382 ATPases associated with a variety of cellular activities AMD08_RS20785 SM01211 AMD08_RS20785 AMD08_RS20850 SM00656 AMD08_RS20850 AMD08_RS20880 SM00528 Domain in histone-like proteins of HNS family AMD08_RS20895 SM00382 ATPases associated with a variety of cellular activities AMD08_RS20925 SM00882 Coenzyme A transferase AMD08_RS20930 SM00882 Coenzyme A transferase AMD08_RS20945 SM00984 UDP binding domain AMD08_RS20970 SM00893 Electron transfer flavoprotein domain AMD08_RS20975 SM00893 Electron transfer flavoprotein domain AMD08_RS21050 SM00382 ATPases associated with a variety of cellular activities AMD08_RS21065 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD08_RS21100 SM00487 DEAD-like helicases superfamily AMD08_RS21100 SM00490 helicase superfamily c-terminal domain AMD08_RS21135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS21170 SM00825 Beta-ketoacyl synthase AMD08_RS21240 SM00382 ATPases associated with a variety of cellular activities AMD08_RS21260 SM00382 ATPases associated with a variety of cellular activities AMD08_RS21260 SM00448 cheY-homologous receiver domain AMD08_RS21265 SM00387 Histidine kinase-like ATPases AMD08_RS21280 SM00830 Chorismate mutase type II AMD08_RS21290 SM00382 ATPases associated with a variety of cellular activities AMD08_RS21360 SM00986 Uracil DNA glycosylase superfamily AMD08_RS21360 SM00987 UreE urease accessory protein, C-terminal domain AMD08_RS21400 SM00382 ATPases associated with a variety of cellular activities AMD08_RS21400 SM00930 AMD08_RS21400 AMD08_RS21420 SM00387 Histidine kinase-like ATPases AMD08_RS21420 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS21420 SM00448 cheY-homologous receiver domain AMD08_RS21475 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS21475 SM00091 PAS domain AMD08_RS21475 SM00387 Histidine kinase-like ATPases AMD08_RS21475 SM00388 His Kinase A (phosphoacceptor) domain AMD08_RS21475 SM00448 cheY-homologous receiver domain AMD08_RS21495 SM01005 Alanine racemase, C-terminal domain AMD08_RS21505 SM00344 helix_turn_helix ASNC type AMD08_RS21560 SM00382 ATPases associated with a variety of cellular activities AMD08_RS21570 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AMD08_RS21575 SM00986 Uracil DNA glycosylase superfamily AMD08_RS21575 SM00987 UreE urease accessory protein, C-terminal domain AMD08_RS21580 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD08_RS21645 SM00448 cheY-homologous receiver domain AMD08_RS21645 SM00850 LytTr DNA-binding domain AMD08_RS21650 SM00387 Histidine kinase-like ATPases AMD08_RS21690 SM00091 PAS domain AMD08_RS21690 SM00138 Methyltransferase, chemotaxis proteins AMD08_RS21690 SM00911 HWE histidine kinase AMD08_RS21695 SM00448 cheY-homologous receiver domain AMD08_RS21705 SM00382 ATPases associated with a variety of cellular activities AMD08_RS21705 SM00448 cheY-homologous receiver domain AMD08_RS21760 SM00382 ATPases associated with a variety of cellular activities AMD08_RS21835 SM00382 ATPases associated with a variety of cellular activities AMD08_RS21840 SM00631 AMD08_RS21840 AMD08_RS21865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD08_RS21865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD08_RS21870 SM00477 DNA/RNA non-specific endonuclease AMD08_RS21870 SM00892 DNA/RNA non-specific endonuclease AMD08_RS21935 SM00382 ATPases associated with a variety of cellular activities AMD08_RS22150 SM00382 ATPases associated with a variety of cellular activities AMD08_RS22290 SM00257 Lysin motif AMD08_RS22315 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD08_RS22315 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD08_RS22315 SM00493 AMD08_RS22315 AMD08_RS22370 SM00487 DEAD-like helicases superfamily AMD08_RS22370 SM00490 helicase superfamily c-terminal domain AMD08_RS22405 SM00986 Uracil DNA glycosylase superfamily AMD08_RS22405 SM00987 UreE urease accessory protein, C-terminal domain AMD08_RS22410 SM00448 cheY-homologous receiver domain AMD08_RS22420 SM00382 ATPases associated with a variety of cellular activities AMD08_RS22425 SM00487 DEAD-like helicases superfamily AMD08_RS22425 SM00490 helicase superfamily c-terminal domain AMD08_RS22435 SM00357 Cold shock protein domain AMD08_RS22435 SM00382 ATPases associated with a variety of cellular activities AMD08_RS22435 SM00959 Rho termination factor, N-terminal domain AMD08_RS22465 SM00487 DEAD-like helicases superfamily AMD08_RS22505 SM00382 ATPases associated with a variety of cellular activities AMD08_RS22515 SM00257 Lysin motif AMD08_RS22545 SM01150 AMD08_RS22545 AMD08_RS22590 SM00644 AMD08_RS22590 AMD08_RS22600 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD08_RS22635 SM01217 AMD08_RS22635 AMD08_RS22640 SM00905 Dihydroneopterin aldolase AMD08_RS22665 SM00400 zinc finger AMD08_RS22665 SM00493 AMD08_RS22665 AMD08_RS22665 SM00766 DNA primase DnaG DnaB-binding AMD08_RS22770 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS22770 SM00091 PAS domain AMD08_RS22825 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD08_RS22860 SM00155 Phospholipase D. Active site motifs. AMD08_RS22945 SM00796 Allophanate hydrolase subunit 1 AMD08_RS22945 SM00797 Allophanate hydrolase subunit 2 AMD08_RS22945 SM00878 Biotin carboxylase C-terminal domain AMD08_RS23005 SM00382 ATPases associated with a variety of cellular activities AMD08_RS23055 SM00829 Enoylreductase AMD08_RS23095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD08_RS23095 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD08_RS23095 SM00091 PAS domain AMD08_RS23095 SM00267 diguanylate cyclase AMD08_RS23125 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD08_RS23150 SM00014 Acid phosphatase homologues AMD08_RS23160 SM00028 Tetratricopeptide repeats