AMD07_RS00370 SM00633 Glycosyl hydrolase family 10 AMD07_RS00400 SM00382 ATPases associated with a variety of cellular activities AMD07_RS00400 SM00760 Bacterial dnaA protein helix-turn-helix domain AMD07_RS00405 SM00480 DNA polymerase III beta subunit AMD07_RS00415 SM00387 Histidine kinase-like ATPases AMD07_RS00415 SM00433 TopoisomeraseII AMD07_RS00430 SM00028 Tetratricopeptide repeats AMD07_RS00465 SM00155 Phospholipase D. Active site motifs. AMD07_RS00480 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD07_RS00510 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD07_RS00510 SM00245 tail specific protease AMD07_RS00590 SM00633 Glycosyl hydrolase family 10 AMD07_RS00605 SM00633 Glycosyl hydrolase family 10 AMD07_RS00620 SM00633 Glycosyl hydrolase family 10 AMD07_RS00645 SM01007 Class II Aldolase and Adducin N-terminal domain AMD07_RS00675 SM00612 AMD07_RS00675 AMD07_RS00695 SM00758 AMD07_RS00695 AMD07_RS00695 SM01217 AMD07_RS00695 AMD07_RS00705 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD07_RS00720 SM00354 helix_turn _helix lactose operon repressor AMD07_RS00795 SM00382 ATPases associated with a variety of cellular activities AMD07_RS00805 SM00836 DALR anticodon binding domain AMD07_RS00855 SM00564 beta-propeller repeat AMD07_RS00885 SM00091 PAS domain AMD07_RS00885 SM00387 Histidine kinase-like ATPases AMD07_RS00885 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS00885 SM00448 cheY-homologous receiver domain AMD07_RS00895 SM00346 helix_turn_helix isocitrate lyase regulation AMD07_RS00915 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD07_RS00970 SM00421 helix_turn_helix, Lux Regulon AMD07_RS00970 SM00448 cheY-homologous receiver domain AMD07_RS01110 SM00155 Phospholipase D. Active site motifs. AMD07_RS01130 SM01266 AMD07_RS01130 AMD07_RS01140 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS01180 SM00382 ATPases associated with a variety of cellular activities AMD07_RS01180 SM01086 C-terminal, D2-small domain, of ClpB protein AMD07_RS01205 SM00915 Jacalin-like lectin domain AMD07_RS01215 SM00965 Secretin and TonB N terminus short domain AMD07_RS01235 SM00220 Serine/Threonine protein kinases, catalytic domain AMD07_RS01245 SM00028 Tetratricopeptide repeats AMD07_RS01260 SM00240 Forkhead associated domain AMD07_RS01285 SM00331 Sigma factor PP2C-like phosphatases AMD07_RS01285 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD07_RS01305 SM00912 haemagglutination activity domain AMD07_RS01320 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD07_RS01320 SM00474 3'-5' exonuclease AMD07_RS01320 SM00475 5'-3' exonuclease AMD07_RS01320 SM00482 DNA polymerase A domain AMD07_RS01375 SM00563 Phosphate acyltransferases AMD07_RS01415 SM00822 AMD07_RS01415 AMD07_RS01440 SM00825 Beta-ketoacyl synthase AMD07_RS01450 SM00248 ankyrin repeats AMD07_RS01475 SM01057 Eukaryotic-type carbonic anhydrase AMD07_RS01480 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD07_RS01480 SM00924 MgtE intracellular N domain AMD07_RS01485 SM00881 CoA binding domain AMD07_RS01545 SM00382 ATPases associated with a variety of cellular activities AMD07_RS01555 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS01595 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS01605 SM00382 ATPases associated with a variety of cellular activities AMD07_RS01625 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD07_RS01675 SM01004 Delta-aminolevulinic acid dehydratase AMD07_RS01690 SM00477 DNA/RNA non-specific endonuclease AMD07_RS01690 SM00892 DNA/RNA non-specific endonuclease AMD07_RS01720 SM00491 AMD07_RS01720 AMD07_RS01725 SM01060 AMD07_RS01725 AMD07_RS01730 SM00248 ankyrin repeats AMD07_RS01750 SM00448 cheY-homologous receiver domain AMD07_RS01750 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS01755 SM00387 Histidine kinase-like ATPases AMD07_RS01755 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS01820 SM00960 Roadblock/LC7 domain AMD07_RS01850 SM00849 Metallo-beta-lactamase superfamily AMD07_RS01890 SM00382 ATPases associated with a variety of cellular activities AMD07_RS01905 SM00421 helix_turn_helix, Lux Regulon AMD07_RS01905 SM00448 cheY-homologous receiver domain AMD07_RS01920 SM01060 AMD07_RS01920 AMD07_RS01965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD07_RS01985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS01985 SM00387 Histidine kinase-like ATPases AMD07_RS01985 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS01990 SM00448 cheY-homologous receiver domain AMD07_RS01990 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS02040 SM00244 prohibitin homologues AMD07_RS02070 SM00052 Putative diguanylate phosphodiesterase AMD07_RS02085 SM00382 ATPases associated with a variety of cellular activities AMD07_RS02095 SM00938 Nitrogen regulatory protein P-II AMD07_RS02140 SM00823 Phosphopantetheine attachment site AMD07_RS02140 SM00824 Thioesterase AMD07_RS02170 SM00836 DALR anticodon binding domain AMD07_RS02170 SM01016 Arginyl tRNA synthetase N terminal dom AMD07_RS02200 SM01259 AMD07_RS02200 AMD07_RS02220 SM00470 ParB-like nuclease domain AMD07_RS02265 SM00363 S4 RNA-binding domain AMD07_RS02295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD07_RS02295 SM01232 AMD07_RS02295 AMD07_RS02310 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS02310 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS02345 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD07_RS02370 SM00354 helix_turn _helix lactose operon repressor AMD07_RS02380 SM00563 Phosphate acyltransferases AMD07_RS02385 SM00829 Enoylreductase AMD07_RS02405 SM00382 ATPases associated with a variety of cellular activities AMD07_RS02415 SM00829 Enoylreductase AMD07_RS02540 SM00382 ATPases associated with a variety of cellular activities AMD07_RS02650 SM00487 DEAD-like helicases superfamily AMD07_RS02650 SM00490 helicase superfamily c-terminal domain AMD07_RS02670 SM00822 AMD07_RS02670 AMD07_RS02930 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AMD07_RS02955 SM00421 helix_turn_helix, Lux Regulon AMD07_RS02955 SM00448 cheY-homologous receiver domain AMD07_RS02975 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS03055 SM00642 Alpha-amylase domain AMD07_RS03060 SM00642 Alpha-amylase domain AMD07_RS03065 SM00642 Alpha-amylase domain AMD07_RS03115 SM00354 helix_turn _helix lactose operon repressor AMD07_RS03155 SM00344 helix_turn_helix ASNC type AMD07_RS03175 SM00382 ATPases associated with a variety of cellular activities AMD07_RS03190 SM00382 ATPases associated with a variety of cellular activities AMD07_RS03225 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS03255 SM00855 Phosphoglycerate mutase family AMD07_RS03260 SM00867 YceI-like domain AMD07_RS03265 SM00155 Phospholipase D. Active site motifs. AMD07_RS03275 SM00563 Phosphate acyltransferases AMD07_RS03290 SM00028 Tetratricopeptide repeats AMD07_RS03315 SM01230 AMD07_RS03315 AMD07_RS03320 SM00938 Nitrogen regulatory protein P-II AMD07_RS03330 SM00387 Histidine kinase-like ATPases AMD07_RS03330 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS03335 SM00382 ATPases associated with a variety of cellular activities AMD07_RS03335 SM00448 cheY-homologous receiver domain AMD07_RS03395 SM00450 Rhodanese Homology Domain AMD07_RS03420 SM00387 Histidine kinase-like ATPases AMD07_RS03420 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS03425 SM00382 ATPases associated with a variety of cellular activities AMD07_RS03425 SM00448 cheY-homologous receiver domain AMD07_RS03535 SM00563 Phosphate acyltransferases AMD07_RS03570 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS03595 SM00100 Cyclic nucleotide-monophosphate binding domain AMD07_RS03595 SM00267 diguanylate cyclase AMD07_RS03620 SM00878 Biotin carboxylase C-terminal domain AMD07_RS03645 SM00953 AMD07_RS03645 AMD07_RS03685 SM00833 Cobalamin synthesis protein cobW C-terminal domain AMD07_RS03715 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD07_RS03750 SM00829 Enoylreductase AMD07_RS03780 SM00487 DEAD-like helicases superfamily AMD07_RS03780 SM00490 helicase superfamily c-terminal domain AMD07_RS03780 SM00847 Helicase associated domain (HA2) Add an annotation AMD07_RS03915 SM00422 helix_turn_helix, mercury resistance AMD07_RS03950 SM00448 cheY-homologous receiver domain AMD07_RS03950 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS03955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS03955 SM00387 Histidine kinase-like ATPases AMD07_RS03955 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS04100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD07_RS04105 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD07_RS04125 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS04155 SM00420 helix_turn_helix, Deoxyribose operon repressor AMD07_RS04155 SM01134 AMD07_RS04155 AMD07_RS04170 SM00882 Coenzyme A transferase AMD07_RS04175 SM00882 Coenzyme A transferase AMD07_RS04195 SM00998 Adenylosuccinate lyase C-terminus AMD07_RS04215 SM00346 helix_turn_helix isocitrate lyase regulation AMD07_RS04220 SM00090 RIO-like kinase AMD07_RS04235 SM01228 AMD07_RS04235 AMD07_RS04290 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD07_RS04290 SM00876 Biotin and Thiamin Synthesis associated domain AMD07_RS04310 SM00369 Leucine-rich repeats, typical (most populated) subfamily AMD07_RS04405 SM00382 ATPases associated with a variety of cellular activities AMD07_RS04465 SM00267 diguanylate cyclase AMD07_RS04475 SM00642 Alpha-amylase domain AMD07_RS04480 SM00642 Alpha-amylase domain AMD07_RS04490 SM00642 Alpha-amylase domain AMD07_RS04500 SM00642 Alpha-amylase domain AMD07_RS04550 SM00822 AMD07_RS04550 AMD07_RS04560 SM00487 DEAD-like helicases superfamily AMD07_RS04560 SM00490 helicase superfamily c-terminal domain AMD07_RS04570 SM00326 Src homology 3 domains AMD07_RS04575 SM00861 Transketolase, pyrimidine binding domain AMD07_RS04585 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AMD07_RS04605 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD07_RS04705 SM00271 DnaJ molecular chaperone homology domain AMD07_RS04725 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMD07_RS04745 SM00903 Flavin reductase like domain AMD07_RS04765 SM00100 Cyclic nucleotide-monophosphate binding domain AMD07_RS04765 SM00419 helix_turn_helix, cAMP Regulatory protein AMD07_RS04820 SM00387 Histidine kinase-like ATPases AMD07_RS04820 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS04820 SM00448 cheY-homologous receiver domain AMD07_RS04825 SM00052 Putative diguanylate phosphodiesterase AMD07_RS04825 SM00267 diguanylate cyclase AMD07_RS04825 SM00448 cheY-homologous receiver domain AMD07_RS04885 SM00563 Phosphate acyltransferases AMD07_RS04910 SM01209 AMD07_RS04910 AMD07_RS04910 SM01210 AMD07_RS04910 AMD07_RS04920 SM00798 AICARFT/IMPCHase bienzyme AMD07_RS04920 SM00851 MGS-like domain AMD07_RS04935 SM00195 Dual specificity phosphatase, catalytic domain AMD07_RS04955 SM00563 Phosphate acyltransferases AMD07_RS04980 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS05010 SM00878 Biotin carboxylase C-terminal domain AMD07_RS05040 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS05050 SM00234 in StAR and phosphatidylcholine transfer protein AMD07_RS05070 SM00883 Chaperonin 10 Kd subunit AMD07_RS05130 SM00944 Pro-kumamolisin, activation domain AMD07_RS05145 SM00867 YceI-like domain AMD07_RS05200 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD07_RS05210 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD07_RS05210 SM00895 AMD07_RS05210 AMD07_RS05230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS05230 SM00331 Sigma factor PP2C-like phosphatases AMD07_RS05275 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS05350 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD07_RS05380 SM00354 helix_turn _helix lactose operon repressor AMD07_RS05435 SM00869 Autotransporter beta-domain AMD07_RS05480 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS05585 SM00382 ATPases associated with a variety of cellular activities AMD07_RS05620 SM00318 Staphylococcal nuclease homologues AMD07_RS05630 SM00528 Domain in histone-like proteins of HNS family AMD07_RS05635 SM00642 Alpha-amylase domain AMD07_RS05650 SM00448 cheY-homologous receiver domain AMD07_RS05650 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS05655 SM00387 Histidine kinase-like ATPases AMD07_RS05655 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS05715 SM00382 ATPases associated with a variety of cellular activities AMD07_RS05715 SM00448 cheY-homologous receiver domain AMD07_RS05720 SM00387 Histidine kinase-like ATPases AMD07_RS05720 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS05730 SM00881 CoA binding domain AMD07_RS05740 SM01126 AMD07_RS05740 AMD07_RS05970 SM00448 cheY-homologous receiver domain AMD07_RS05975 SM00387 Histidine kinase-like ATPases AMD07_RS06070 SM00387 Histidine kinase-like ATPases AMD07_RS06090 SM00382 ATPases associated with a variety of cellular activities AMD07_RS06090 SM00994 ClpX C4-type zinc finger AMD07_RS06090 SM01086 C-terminal, D2-small domain, of ClpB protein AMD07_RS06095 SM00382 ATPases associated with a variety of cellular activities AMD07_RS06095 SM00464 Found in ATP-dependent protease La (LON) AMD07_RS06100 SM00411 bacterial (prokaryotic) histone like domain AMD07_RS06125 SM00257 Lysin motif AMD07_RS06130 SM00849 Metallo-beta-lactamase superfamily AMD07_RS06145 SM00479 AMD07_RS06145 AMD07_RS06150 SM00331 Sigma factor PP2C-like phosphatases AMD07_RS06150 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD07_RS06175 SM00849 Metallo-beta-lactamase superfamily AMD07_RS06180 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD07_RS06245 SM00382 ATPases associated with a variety of cellular activities AMD07_RS06255 SM00493 AMD07_RS06255 AMD07_RS06270 SM00460 Transglutaminase/protease-like homologues AMD07_RS06280 SM00382 ATPases associated with a variety of cellular activities AMD07_RS06330 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD07_RS06335 SM00822 AMD07_RS06335 AMD07_RS06345 SM00825 Beta-ketoacyl synthase AMD07_RS06380 SM00382 ATPases associated with a variety of cellular activities AMD07_RS06425 SM01359 AMD07_RS06425 AMD07_RS06425 SM01360 AMD07_RS06425 AMD07_RS06460 SM00271 DnaJ molecular chaperone homology domain AMD07_RS06465 SM00448 cheY-homologous receiver domain AMD07_RS06470 SM00244 prohibitin homologues AMD07_RS06475 SM00244 prohibitin homologues AMD07_RS06480 SM01321 AMD07_RS06480 AMD07_RS06485 SM00788 Adenylosuccinate synthetase AMD07_RS06500 SM00822 AMD07_RS06500 AMD07_RS06555 SM00220 Serine/Threonine protein kinases, catalytic domain AMD07_RS06575 SM00855 Phosphoglycerate mutase family AMD07_RS06630 SM00052 Putative diguanylate phosphodiesterase AMD07_RS06635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD07_RS06645 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD07_RS06650 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD07_RS06665 SM00974 AMD07_RS06665 AMD07_RS06685 SM00966 SpoVT / AbrB like domain AMD07_RS06705 SM00481 DNA polymerase alpha chain like domain AMD07_RS06715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD07_RS06750 SM00091 PAS domain AMD07_RS06750 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS06775 SM00487 DEAD-like helicases superfamily AMD07_RS06775 SM00490 helicase superfamily c-terminal domain AMD07_RS06775 SM00982 AMD07_RS06775 AMD07_RS06775 SM01058 CarD-like/TRCF domain AMD07_RS06790 SM00448 cheY-homologous receiver domain AMD07_RS06790 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS06795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS06795 SM00387 Histidine kinase-like ATPases AMD07_RS06795 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS06800 SM00645 Papain family cysteine protease AMD07_RS06870 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS06935 SM00829 Enoylreductase AMD07_RS06955 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS06955 SM00478 endonuclease III AMD07_RS06955 SM01009 AlkA N-terminal domain AMD07_RS07000 SM00487 DEAD-like helicases superfamily AMD07_RS07000 SM00490 helicase superfamily c-terminal domain AMD07_RS07005 SM00052 Putative diguanylate phosphodiesterase AMD07_RS07005 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS07005 SM00091 PAS domain AMD07_RS07005 SM00267 diguanylate cyclase AMD07_RS07010 SM00363 S4 RNA-binding domain AMD07_RS07015 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS07015 SM00267 diguanylate cyclase AMD07_RS07050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS07050 SM00387 Histidine kinase-like ATPases AMD07_RS07050 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS07055 SM00448 cheY-homologous receiver domain AMD07_RS07055 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS07085 SM00382 ATPases associated with a variety of cellular activities AMD07_RS07220 SM00316 Ribosomal protein S1-like RNA-binding domain AMD07_RS07255 SM01351 AMD07_RS07255 AMD07_RS07270 SM00977 TilS substrate C-terminal domain AMD07_RS07275 SM00098 Alkaline phosphatase homologues AMD07_RS07330 SM01160 AMD07_RS07330 AMD07_RS07395 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD07_RS07425 SM00257 Lysin motif AMD07_RS07455 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD07_RS07530 SM00052 Putative diguanylate phosphodiesterase AMD07_RS07530 SM00267 diguanylate cyclase AMD07_RS07530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS07545 SM00822 AMD07_RS07545 AMD07_RS07590 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD07_RS07595 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD07_RS07645 SM00316 Ribosomal protein S1-like RNA-binding domain AMD07_RS07645 SM00322 K homology RNA-binding domain AMD07_RS07665 SM01387 AMD07_RS07665 AMD07_RS07670 SM00316 Ribosomal protein S1-like RNA-binding domain AMD07_RS07670 SM00322 K homology RNA-binding domain AMD07_RS07690 SM01001 AIR carboxylase AMD07_RS07815 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS07855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS07860 SM00421 helix_turn_helix, Lux Regulon AMD07_RS07860 SM00448 cheY-homologous receiver domain AMD07_RS07865 SM00387 Histidine kinase-like ATPases AMD07_RS07870 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS07915 SM00448 cheY-homologous receiver domain AMD07_RS07940 SM00052 Putative diguanylate phosphodiesterase AMD07_RS07945 SM00869 Autotransporter beta-domain AMD07_RS07950 SM00421 helix_turn_helix, Lux Regulon AMD07_RS07950 SM00448 cheY-homologous receiver domain AMD07_RS07955 SM00387 Histidine kinase-like ATPases AMD07_RS07955 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS07980 SM00869 Autotransporter beta-domain AMD07_RS08000 SM00448 cheY-homologous receiver domain AMD07_RS08000 SM00850 LytTr DNA-binding domain AMD07_RS08150 SM01034 Sensors of blue-light using FAD AMD07_RS08190 SM00363 S4 RNA-binding domain AMD07_RS08195 SM00316 Ribosomal protein S1-like RNA-binding domain AMD07_RS08200 SM00421 helix_turn_helix, Lux Regulon AMD07_RS08200 SM00448 cheY-homologous receiver domain AMD07_RS08205 SM00450 Rhodanese Homology Domain AMD07_RS08225 SM00984 UDP binding domain AMD07_RS08260 SM00823 Phosphopantetheine attachment site AMD07_RS08315 SM00155 Phospholipase D. Active site motifs. AMD07_RS08325 SM00490 helicase superfamily c-terminal domain AMD07_RS08335 SM00490 helicase superfamily c-terminal domain AMD07_RS08340 SM00382 ATPases associated with a variety of cellular activities AMD07_RS08350 SM00487 DEAD-like helicases superfamily AMD07_RS08365 SM00382 ATPases associated with a variety of cellular activities AMD07_RS08420 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD07_RS08420 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD07_RS08420 SM00493 AMD07_RS08420 AMD07_RS08500 SM00487 DEAD-like helicases superfamily AMD07_RS08625 SM00953 AMD07_RS08625 AMD07_RS08685 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS08695 SM00382 ATPases associated with a variety of cellular activities AMD07_RS08720 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD07_RS08720 SM00465 GIY-YIG type nucleases (URI domain) AMD07_RS08730 SM00226 Low molecular weight phosphatase family AMD07_RS08745 SM00382 ATPases associated with a variety of cellular activities AMD07_RS08760 SM00849 Metallo-beta-lactamase superfamily AMD07_RS08770 SM00382 ATPases associated with a variety of cellular activities AMD07_RS08820 SM00382 ATPases associated with a variety of cellular activities AMD07_RS08905 SM00448 cheY-homologous receiver domain AMD07_RS08910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS08910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS08910 SM00091 PAS domain AMD07_RS08910 SM00387 Histidine kinase-like ATPases AMD07_RS08910 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS08910 SM00448 cheY-homologous receiver domain AMD07_RS08915 SM00316 Ribosomal protein S1-like RNA-binding domain AMD07_RS08915 SM00732 Likely ribonuclease with RNase H fold. AMD07_RS08985 SM00479 AMD07_RS08985 AMD07_RS08995 SM00529 Helix-turn-helix diphteria tox regulatory element AMD07_RS09020 SM00852 Probable molybdopterin binding domain AMD07_RS09065 SM00450 Rhodanese Homology Domain AMD07_RS09070 SM00852 Probable molybdopterin binding domain AMD07_RS09075 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09080 SM00564 beta-propeller repeat AMD07_RS09095 SM00028 Tetratricopeptide repeats AMD07_RS09105 SM00562 AMD07_RS09105 AMD07_RS09135 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09155 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09155 SM00843 AMD07_RS09155 AMD07_RS09175 SM00316 Ribosomal protein S1-like RNA-binding domain AMD07_RS09180 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09180 SM01086 C-terminal, D2-small domain, of ClpB protein AMD07_RS09205 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS09215 SM00052 Putative diguanylate phosphodiesterase AMD07_RS09215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS09215 SM00091 PAS domain AMD07_RS09215 SM00267 diguanylate cyclase AMD07_RS09220 SM00091 PAS domain AMD07_RS09220 SM00387 Histidine kinase-like ATPases AMD07_RS09225 SM00052 Putative diguanylate phosphodiesterase AMD07_RS09225 SM00267 diguanylate cyclase AMD07_RS09225 SM00448 cheY-homologous receiver domain AMD07_RS09230 SM00387 Histidine kinase-like ATPases AMD07_RS09245 SM00858 AMD07_RS09245 AMD07_RS09250 SM00260 Two component signalling adaptor domain AMD07_RS09250 SM00448 cheY-homologous receiver domain AMD07_RS09295 SM00047 Lysozyme subfamily 2 AMD07_RS09335 SM00421 helix_turn_helix, Lux Regulon AMD07_RS09335 SM00448 cheY-homologous receiver domain AMD07_RS09345 SM00448 cheY-homologous receiver domain AMD07_RS09350 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09375 SM00822 AMD07_RS09375 AMD07_RS09425 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09480 SM00267 diguanylate cyclase AMD07_RS09490 SM00267 diguanylate cyclase AMD07_RS09495 SM00052 Putative diguanylate phosphodiesterase AMD07_RS09495 SM00267 diguanylate cyclase AMD07_RS09510 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09510 SM00962 SRP54-type protein, GTPase domain AMD07_RS09525 SM00448 cheY-homologous receiver domain AMD07_RS09535 SM00073 Histidine Phosphotransfer domain AMD07_RS09535 SM00260 Two component signalling adaptor domain AMD07_RS09535 SM00387 Histidine kinase-like ATPases AMD07_RS09535 SM01231 AMD07_RS09535 AMD07_RS09555 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS09590 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09760 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD07_RS09760 SM01240 AMD07_RS09760 AMD07_RS09785 SM00822 AMD07_RS09785 AMD07_RS09795 SM00028 Tetratricopeptide repeats AMD07_RS09805 SM00411 bacterial (prokaryotic) histone like domain AMD07_RS09810 SM00316 Ribosomal protein S1-like RNA-binding domain AMD07_RS09885 SM00354 helix_turn _helix lactose operon repressor AMD07_RS09910 SM00363 S4 RNA-binding domain AMD07_RS09935 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09985 SM00357 Cold shock protein domain AMD07_RS09990 SM00382 ATPases associated with a variety of cellular activities AMD07_RS09995 SM00382 ATPases associated with a variety of cellular activities AMD07_RS10025 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD07_RS10035 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD07_RS10050 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD07_RS10090 SM00840 AMD07_RS10090 AMD07_RS10115 SM01234 AMD07_RS10115 AMD07_RS10155 SM00849 Metallo-beta-lactamase superfamily AMD07_RS10210 SM00841 Elongation factor P, C-terminal AMD07_RS10210 SM01185 AMD07_RS10210 AMD07_RS10220 SM00052 Putative diguanylate phosphodiesterase AMD07_RS10220 SM00267 diguanylate cyclase AMD07_RS10220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS10255 SM00382 ATPases associated with a variety of cellular activities AMD07_RS10260 SM00487 DEAD-like helicases superfamily AMD07_RS10260 SM00490 helicase superfamily c-terminal domain AMD07_RS10285 SM00357 Cold shock protein domain AMD07_RS10290 SM01322 AMD07_RS10290 AMD07_RS10300 SM00052 Putative diguanylate phosphodiesterase AMD07_RS10300 SM00267 diguanylate cyclase AMD07_RS10315 SM00822 AMD07_RS10315 AMD07_RS10335 SM00853 MutL C terminal dimerisation domain AMD07_RS10335 SM01340 AMD07_RS10335 AMD07_RS10340 SM00646 AMD07_RS10340 AMD07_RS10375 SM00474 3'-5' exonuclease AMD07_RS10390 SM00528 Domain in histone-like proteins of HNS family AMD07_RS10475 SM00857 Resolvase, N terminal domain AMD07_RS10545 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS10545 SM00267 diguanylate cyclase AMD07_RS10550 SM00260 Two component signalling adaptor domain AMD07_RS10555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS10555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS10565 SM00487 DEAD-like helicases superfamily AMD07_RS10565 SM00490 helicase superfamily c-terminal domain AMD07_RS10620 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD07_RS10645 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD07_RS10645 SM01091 Transporter associated domain AMD07_RS10680 SM00382 ATPases associated with a variety of cellular activities AMD07_RS10710 SM01230 AMD07_RS10710 AMD07_RS10720 SM01230 AMD07_RS10720 AMD07_RS10730 SM00267 diguanylate cyclase AMD07_RS10730 SM00448 cheY-homologous receiver domain AMD07_RS10780 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS10780 SM00091 PAS domain AMD07_RS10780 SM00387 Histidine kinase-like ATPases AMD07_RS10780 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS10780 SM00448 cheY-homologous receiver domain AMD07_RS10780 SM01079 AMD07_RS10780 AMD07_RS10785 SM00448 cheY-homologous receiver domain AMD07_RS10785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD07_RS10815 SM00354 helix_turn _helix lactose operon repressor AMD07_RS10875 SM01323 AMD07_RS10875 AMD07_RS10890 SM00344 helix_turn_helix ASNC type AMD07_RS10970 SM00387 Histidine kinase-like ATPases AMD07_RS11015 SM00944 Pro-kumamolisin, activation domain AMD07_RS11065 SM01130 AMD07_RS11065 AMD07_RS11090 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS11095 SM00382 ATPases associated with a variety of cellular activities AMD07_RS11095 SM00962 SRP54-type protein, GTPase domain AMD07_RS11095 SM00963 SRP54-type protein, helical bundle domain AMD07_RS11100 SM00478 endonuclease III AMD07_RS11110 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS11110 SM00091 PAS domain AMD07_RS11110 SM00387 Histidine kinase-like ATPases AMD07_RS11110 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS11110 SM00448 cheY-homologous receiver domain AMD07_RS11125 SM00465 GIY-YIG type nucleases (URI domain) AMD07_RS11155 SM00507 HNH nucleases AMD07_RS11160 SM00861 Transketolase, pyrimidine binding domain AMD07_RS11185 SM00849 Metallo-beta-lactamase superfamily AMD07_RS11270 SM00422 helix_turn_helix, mercury resistance AMD07_RS11275 SM00411 bacterial (prokaryotic) histone like domain AMD07_RS11280 SM00873 B3/4 domain AMD07_RS11280 SM00874 tRNA synthetase B5 domain AMD07_RS11280 SM00896 Ferredoxin-fold anticodon binding domain AMD07_RS11305 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD07_RS11310 SM00354 helix_turn _helix lactose operon repressor AMD07_RS11315 SM00642 Alpha-amylase domain AMD07_RS11345 SM00642 Alpha-amylase domain AMD07_RS11385 SM00758 AMD07_RS11385 AMD07_RS11430 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD07_RS11455 SM01130 AMD07_RS11455 AMD07_RS11475 SM00670 Large family of predicted nucleotide-binding domains AMD07_RS11530 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS11530 SM00091 PAS domain AMD07_RS11530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS11545 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD07_RS11555 SM00382 ATPases associated with a variety of cellular activities AMD07_RS11595 SM00382 ATPases associated with a variety of cellular activities AMD07_RS11605 SM01103 AMD07_RS11605 AMD07_RS11615 SM00257 Lysin motif AMD07_RS11635 SM00463 Small MutS-related domain AMD07_RS11660 SM01192 AMD07_RS11660 AMD07_RS11660 SM01193 AMD07_RS11660 AMD07_RS11685 SM00387 Histidine kinase-like ATPases AMD07_RS11685 SM00433 TopoisomeraseII AMD07_RS11710 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD07_RS11710 SM01091 Transporter associated domain AMD07_RS11735 SM00382 ATPases associated with a variety of cellular activities AMD07_RS11745 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD07_RS11900 SM00091 PAS domain AMD07_RS11900 SM00387 Histidine kinase-like ATPases AMD07_RS11900 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS11900 SM00448 cheY-homologous receiver domain AMD07_RS11905 SM00382 ATPases associated with a variety of cellular activities AMD07_RS11910 SM00448 cheY-homologous receiver domain AMD07_RS11915 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS11915 SM00091 PAS domain AMD07_RS11915 SM00387 Histidine kinase-like ATPases AMD07_RS11915 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS11915 SM00448 cheY-homologous receiver domain AMD07_RS11930 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD07_RS11940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS11940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS11970 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS12035 SM00966 SpoVT / AbrB like domain AMD07_RS12080 SM00736 Dystroglycan-type cadherin-like domains. AMD07_RS12095 SM00382 ATPases associated with a variety of cellular activities AMD07_RS12270 SM00220 Serine/Threonine protein kinases, catalytic domain AMD07_RS12300 SM00260 Two component signalling adaptor domain AMD07_RS12310 SM00448 cheY-homologous receiver domain AMD07_RS12315 SM00073 Histidine Phosphotransfer domain AMD07_RS12315 SM00260 Two component signalling adaptor domain AMD07_RS12315 SM00387 Histidine kinase-like ATPases AMD07_RS12315 SM01231 AMD07_RS12315 AMD07_RS12320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12330 SM01049 AMD07_RS12330 AMD07_RS12335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12400 SM00260 Two component signalling adaptor domain AMD07_RS12410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS12410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS12415 SM00138 Methyltransferase, chemotaxis proteins AMD07_RS12425 SM00448 cheY-homologous receiver domain AMD07_RS12430 SM00052 Putative diguanylate phosphodiesterase AMD07_RS12430 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS12430 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS12430 SM00091 PAS domain AMD07_RS12430 SM00267 diguanylate cyclase AMD07_RS12450 SM00966 SpoVT / AbrB like domain AMD07_RS12475 SM00073 Histidine Phosphotransfer domain AMD07_RS12475 SM00387 Histidine kinase-like ATPases AMD07_RS12475 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS12475 SM00448 cheY-homologous receiver domain AMD07_RS12480 SM00448 cheY-homologous receiver domain AMD07_RS12480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD07_RS12490 SM00937 AMD07_RS12490 AMD07_RS12495 SM00850 LytTr DNA-binding domain AMD07_RS12555 SM00851 MGS-like domain AMD07_RS12555 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD07_RS12565 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMD07_RS12600 SM00899 AMD07_RS12600 AMD07_RS12620 SM00822 AMD07_RS12620 AMD07_RS12625 SM00841 Elongation factor P, C-terminal AMD07_RS12625 SM01185 AMD07_RS12625 AMD07_RS12670 SM01007 Class II Aldolase and Adducin N-terminal domain AMD07_RS12745 SM00100 Cyclic nucleotide-monophosphate binding domain AMD07_RS12745 SM00419 helix_turn_helix, cAMP Regulatory protein AMD07_RS12790 SM00912 haemagglutination activity domain AMD07_RS12865 SM00014 Acid phosphatase homologues AMD07_RS12875 SM00387 Histidine kinase-like ATPases AMD07_RS12880 SM00448 cheY-homologous receiver domain AMD07_RS12890 SM00052 Putative diguanylate phosphodiesterase AMD07_RS12890 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS12890 SM00267 diguanylate cyclase AMD07_RS12960 SM00646 AMD07_RS12960 AMD07_RS12965 SM00642 Alpha-amylase domain AMD07_RS13010 SM00382 ATPases associated with a variety of cellular activities AMD07_RS13070 SM00487 DEAD-like helicases superfamily AMD07_RS13070 SM00490 helicase superfamily c-terminal domain AMD07_RS13175 SM00830 Chorismate mutase type II AMD07_RS13195 SM00240 Forkhead associated domain AMD07_RS13220 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD07_RS13220 SM00866 AMD07_RS13220 AMD07_RS13260 SM00434 DNA Topoisomerase IV AMD07_RS13280 SM00292 breast cancer carboxy-terminal domain AMD07_RS13280 SM00532 Ligase N family AMD07_RS13295 SM00771 ZipA, C-terminal domain (FtsZ-binding) AMD07_RS13300 SM00968 SMC proteins Flexible Hinge Domain AMD07_RS13360 SM00421 helix_turn_helix, Lux Regulon AMD07_RS13360 SM00448 cheY-homologous receiver domain AMD07_RS13405 SM00947 Carbonic anhydrase AMD07_RS13430 SM00479 AMD07_RS13430 AMD07_RS13460 SM00981 AMD07_RS13460 AMD07_RS13465 SM00382 ATPases associated with a variety of cellular activities AMD07_RS13485 SM00644 AMD07_RS13485 AMD07_RS13495 SM00450 Rhodanese Homology Domain AMD07_RS13520 SM00478 endonuclease III AMD07_RS13530 SM00947 Carbonic anhydrase AMD07_RS13565 SM00382 ATPases associated with a variety of cellular activities AMD07_RS13580 SM00479 AMD07_RS13580 AMD07_RS13585 SM00267 diguanylate cyclase AMD07_RS13590 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD07_RS13600 SM00316 Ribosomal protein S1-like RNA-binding domain AMD07_RS13600 SM00357 Cold shock protein domain AMD07_RS13600 SM00955 AMD07_RS13600 AMD07_RS13620 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMD07_RS13630 SM01018 B12 binding domain AMD07_RS13650 SM00354 helix_turn _helix lactose operon repressor AMD07_RS13670 SM00984 UDP binding domain AMD07_RS13685 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD07_RS13690 SM00382 ATPases associated with a variety of cellular activities AMD07_RS13720 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD07_RS13720 SM01091 Transporter associated domain AMD07_RS13740 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD07_RS13750 SM00861 Transketolase, pyrimidine binding domain AMD07_RS13775 SM00382 ATPases associated with a variety of cellular activities AMD07_RS13815 SM00271 DnaJ molecular chaperone homology domain AMD07_RS13910 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS13940 SM00528 Domain in histone-like proteins of HNS family AMD07_RS13955 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS13970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS13970 SM00267 diguanylate cyclase AMD07_RS13980 SM00267 diguanylate cyclase AMD07_RS14095 SM00357 Cold shock protein domain AMD07_RS14110 SM00947 Carbonic anhydrase AMD07_RS14125 SM00382 ATPases associated with a variety of cellular activities AMD07_RS14145 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD07_RS14175 SM00631 AMD07_RS14175 AMD07_RS14180 SM01217 AMD07_RS14180 AMD07_RS14205 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD07_RS14210 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS14215 SM00434 DNA Topoisomerase IV AMD07_RS14245 SM00710 Parallel beta-helix repeats AMD07_RS14245 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AMD07_RS14250 SM01172 AMD07_RS14250 AMD07_RS14270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD07_RS14280 SM00972 Spore Coat Protein U domain AMD07_RS14295 SM00972 Spore Coat Protein U domain AMD07_RS14320 SM00267 diguanylate cyclase AMD07_RS14350 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD07_RS14390 SM00481 DNA polymerase alpha chain like domain AMD07_RS14475 SM00382 ATPases associated with a variety of cellular activities AMD07_RS14675 SM00671 Sel1-like repeats. AMD07_RS14675 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD07_RS14680 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD07_RS14685 SM00869 Autotransporter beta-domain AMD07_RS14705 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS14705 SM00267 diguanylate cyclase AMD07_RS14735 SM00487 DEAD-like helicases superfamily AMD07_RS14735 SM00490 helicase superfamily c-terminal domain AMD07_RS14750 SM00357 Cold shock protein domain AMD07_RS14785 SM01118 AMD07_RS14785 AMD07_RS14795 SM00448 cheY-homologous receiver domain AMD07_RS14810 SM00358 Double-stranded RNA binding motif AMD07_RS14810 SM00535 Ribonuclease III family AMD07_RS14825 SM00838 Elongation factor G C-terminus AMD07_RS14830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD07_RS14880 SM00530 Helix-turn-helix XRE-family like proteins AMD07_RS14905 SM00812 Alpha-L-fucosidase AMD07_RS14925 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMD07_RS14925 SM00534 ATPase domain of DNA mismatch repair MUTS family AMD07_RS14995 SM00382 ATPases associated with a variety of cellular activities AMD07_RS14995 SM00962 SRP54-type protein, GTPase domain AMD07_RS14995 SM00963 SRP54-type protein, helical bundle domain AMD07_RS15015 SM00813 Alpha-L-arabinofuranosidase C-terminus AMD07_RS15025 SM00448 cheY-homologous receiver domain AMD07_RS15030 SM00091 PAS domain AMD07_RS15030 SM00387 Histidine kinase-like ATPases AMD07_RS15030 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS15035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS15035 SM00387 Histidine kinase-like ATPases AMD07_RS15035 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS15035 SM00448 cheY-homologous receiver domain AMD07_RS15040 SM00138 Methyltransferase, chemotaxis proteins AMD07_RS15050 SM00387 Histidine kinase-like ATPases AMD07_RS15050 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS15050 SM00448 cheY-homologous receiver domain AMD07_RS15075 SM00387 Histidine kinase-like ATPases AMD07_RS15075 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS15075 SM00448 cheY-homologous receiver domain AMD07_RS15080 SM00387 Histidine kinase-like ATPases AMD07_RS15080 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS15115 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS15120 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS15130 SM00382 ATPases associated with a variety of cellular activities AMD07_RS15135 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD07_RS15180 SM00904 Riboflavin kinase AMD07_RS15265 SM00244 prohibitin homologues AMD07_RS15285 SM00478 endonuclease III AMD07_RS15300 SM00421 helix_turn_helix, Lux Regulon AMD07_RS15300 SM00448 cheY-homologous receiver domain AMD07_RS15340 SM00387 Histidine kinase-like ATPases AMD07_RS15340 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS15345 SM00448 cheY-homologous receiver domain AMD07_RS15345 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS15395 SM01060 AMD07_RS15395 AMD07_RS15425 SM00073 Histidine Phosphotransfer domain AMD07_RS15425 SM00260 Two component signalling adaptor domain AMD07_RS15425 SM00387 Histidine kinase-like ATPases AMD07_RS15425 SM01231 AMD07_RS15425 AMD07_RS15430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS15430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS15435 SM00260 Two component signalling adaptor domain AMD07_RS15440 SM00052 Putative diguanylate phosphodiesterase AMD07_RS15440 SM00448 cheY-homologous receiver domain AMD07_RS15445 SM00138 Methyltransferase, chemotaxis proteins AMD07_RS15450 SM00448 cheY-homologous receiver domain AMD07_RS15455 SM00155 Phospholipase D. Active site motifs. AMD07_RS15470 SM00855 Phosphoglycerate mutase family AMD07_RS15520 SM00248 ankyrin repeats AMD07_RS15560 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD07_RS15565 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD07_RS15575 SM00829 Enoylreductase AMD07_RS15580 SM00267 diguanylate cyclase AMD07_RS15645 SM00732 Likely ribonuclease with RNase H fold. AMD07_RS15680 SM00382 ATPases associated with a variety of cellular activities AMD07_RS15695 SM00411 bacterial (prokaryotic) histone like domain AMD07_RS15725 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AMD07_RS15740 SM00382 ATPases associated with a variety of cellular activities AMD07_RS15770 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD07_RS15775 SM00671 Sel1-like repeats. AMD07_RS15805 SM00054 EF-hand, calcium binding motif AMD07_RS15895 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD07_RS15915 SM00382 ATPases associated with a variety of cellular activities AMD07_RS15960 SM00924 MgtE intracellular N domain AMD07_RS15990 SM00656 AMD07_RS15990 AMD07_RS16010 SM00421 helix_turn_helix, Lux Regulon AMD07_RS16035 SM00849 Metallo-beta-lactamase superfamily AMD07_RS16045 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD07_RS16065 SM00422 helix_turn_helix, mercury resistance AMD07_RS16205 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS16215 SM00387 Histidine kinase-like ATPases AMD07_RS16215 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS16215 SM00448 cheY-homologous receiver domain AMD07_RS16220 SM00387 Histidine kinase-like ATPases AMD07_RS16220 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS16220 SM00448 cheY-homologous receiver domain AMD07_RS16230 SM00387 Histidine kinase-like ATPases AMD07_RS16230 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS16230 SM00448 cheY-homologous receiver domain AMD07_RS16235 SM00867 YceI-like domain AMD07_RS16245 SM00867 YceI-like domain AMD07_RS16300 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD07_RS16430 SM00812 Alpha-L-fucosidase AMD07_RS16435 SM00636 AMD07_RS16435 AMD07_RS16450 SM00758 AMD07_RS16450 AMD07_RS16450 SM01217 AMD07_RS16450 AMD07_RS16480 SM01149 AMD07_RS16480 AMD07_RS16540 SM00260 Two component signalling adaptor domain AMD07_RS16550 SM00073 Histidine Phosphotransfer domain AMD07_RS16550 SM00260 Two component signalling adaptor domain AMD07_RS16550 SM00387 Histidine kinase-like ATPases AMD07_RS16550 SM00448 cheY-homologous receiver domain AMD07_RS16550 SM01231 AMD07_RS16550 AMD07_RS16555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS16560 SM00260 Two component signalling adaptor domain AMD07_RS16565 SM00448 cheY-homologous receiver domain AMD07_RS16570 SM00448 cheY-homologous receiver domain AMD07_RS16595 SM00491 AMD07_RS16595 AMD07_RS16620 SM00954 Region found in RelA / SpoT proteins AMD07_RS16665 SM00382 ATPases associated with a variety of cellular activities AMD07_RS16665 SM00487 DEAD-like helicases superfamily AMD07_RS16665 SM00490 helicase superfamily c-terminal domain AMD07_RS16665 SM00847 Helicase associated domain (HA2) Add an annotation AMD07_RS16675 SM00341 Helicase and RNase D C-terminal AMD07_RS16675 SM00487 DEAD-like helicases superfamily AMD07_RS16675 SM00490 helicase superfamily c-terminal domain AMD07_RS16675 SM00956 AMD07_RS16675 AMD07_RS16685 SM00448 cheY-homologous receiver domain AMD07_RS16710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS16710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS16725 SM00448 cheY-homologous receiver domain AMD07_RS16730 SM00091 PAS domain AMD07_RS16730 SM00911 HWE histidine kinase AMD07_RS16785 SM00382 ATPases associated with a variety of cellular activities AMD07_RS16800 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD07_RS16835 SM00834 Putative regulatory protein AMD07_RS16875 SM00382 ATPases associated with a variety of cellular activities AMD07_RS16980 SM00855 Phosphoglycerate mutase family AMD07_RS17030 SM00382 ATPases associated with a variety of cellular activities AMD07_RS17030 SM01086 C-terminal, D2-small domain, of ClpB protein AMD07_RS17035 SM00382 ATPases associated with a variety of cellular activities AMD07_RS17045 SM00062 Bacterial periplasmic substrate-binding proteins AMD07_RS17120 SM00564 beta-propeller repeat AMD07_RS17125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS17235 SM00382 ATPases associated with a variety of cellular activities AMD07_RS17290 SM01329 AMD07_RS17290 AMD07_RS17310 SM00448 cheY-homologous receiver domain AMD07_RS17310 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS17315 SM00387 Histidine kinase-like ATPases AMD07_RS17315 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS17335 SM00014 Acid phosphatase homologues AMD07_RS17385 SM00855 Phosphoglycerate mutase family AMD07_RS17410 SM00829 Enoylreductase AMD07_RS17420 SM00382 ATPases associated with a variety of cellular activities AMD07_RS17470 SM00829 Enoylreductase AMD07_RS17500 SM00838 Elongation factor G C-terminus AMD07_RS17545 SM00662 RNA polymerases D AMD07_RS17550 SM00363 S4 RNA-binding domain AMD07_RS17550 SM01390 AMD07_RS17550 AMD07_RS17610 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD07_RS17615 SM01374 AMD07_RS17615 AMD07_RS17635 SM00322 K homology RNA-binding domain AMD07_RS17650 SM01382 AMD07_RS17650 AMD07_RS17650 SM01383 AMD07_RS17650 AMD07_RS17670 SM01403 AMD07_RS17670 AMD07_RS17680 SM00838 Elongation factor G C-terminus AMD07_RS17680 SM00889 Elongation factor G, domain IV AMD07_RS17695 SM00663 RNA polymerase I subunit A N-terminus AMD07_RS17720 SM00649 Ribosomal protein L11/L12 AMD07_RS17725 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMD07_RS17725 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD07_RS17775 SM01400 AMD07_RS17775 AMD07_RS17795 SM00028 Tetratricopeptide repeats AMD07_RS17805 SM00937 AMD07_RS17805 AMD07_RS17810 SM00028 Tetratricopeptide repeats AMD07_RS17815 SM00852 Probable molybdopterin binding domain AMD07_RS17925 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMD07_RS17925 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMD07_RS17955 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD07_RS17955 SM00475 5'-3' exonuclease AMD07_RS18020 SM00421 helix_turn_helix, Lux Regulon AMD07_RS18025 SM00387 Histidine kinase-like ATPases AMD07_RS18025 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS18025 SM00448 cheY-homologous receiver domain AMD07_RS18030 SM00448 cheY-homologous receiver domain AMD07_RS18105 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD07_RS18140 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD07_RS18140 SM00895 AMD07_RS18140 AMD07_RS18205 SM00650 Ribosomal RNA adenine dimethylases AMD07_RS18220 SM00382 ATPases associated with a variety of cellular activities AMD07_RS18280 SM00382 ATPases associated with a variety of cellular activities AMD07_RS18290 SM00382 ATPases associated with a variety of cellular activities AMD07_RS18340 SM00387 Histidine kinase-like ATPases AMD07_RS18340 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS18345 SM00448 cheY-homologous receiver domain AMD07_RS18345 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS18355 SM00382 ATPases associated with a variety of cellular activities AMD07_RS18375 SM00382 ATPases associated with a variety of cellular activities AMD07_RS18490 SM00996 S-adenosyl-L-homocysteine hydrolase AMD07_RS18490 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD07_RS18525 SM00642 Alpha-amylase domain AMD07_RS18540 SM00944 Pro-kumamolisin, activation domain AMD07_RS18545 SM00829 Enoylreductase AMD07_RS18570 SM00957 SecA DEAD-like domain AMD07_RS18570 SM00958 SecA preprotein cross-linking domain AMD07_RS18590 SM00864 Tubulin/FtsZ family, GTPase domain AMD07_RS18590 SM00865 Tubulin/FtsZ family, C-terminal domain AMD07_RS18595 SM00842 Cell division protein FtsA AMD07_RS18710 SM00448 cheY-homologous receiver domain AMD07_RS18710 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS18715 SM00387 Histidine kinase-like ATPases AMD07_RS18715 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS18745 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD07_RS18805 SM00382 ATPases associated with a variety of cellular activities AMD07_RS18825 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD07_RS18845 SM00829 Enoylreductase AMD07_RS18865 SM00448 cheY-homologous receiver domain AMD07_RS18865 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS18870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS18870 SM00387 Histidine kinase-like ATPases AMD07_RS18870 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS18880 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS18885 SM00849 Metallo-beta-lactamase superfamily AMD07_RS18950 SM00354 helix_turn _helix lactose operon repressor AMD07_RS18960 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD07_RS18960 SM00866 AMD07_RS18960 AMD07_RS19030 SM00382 ATPases associated with a variety of cellular activities AMD07_RS19055 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD07_RS19085 SM00387 Histidine kinase-like ATPases AMD07_RS19085 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS19085 SM00448 cheY-homologous receiver domain AMD07_RS19090 SM00448 cheY-homologous receiver domain AMD07_RS19095 SM00387 Histidine kinase-like ATPases AMD07_RS19095 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS19100 SM00749 bacterial OsmY and nodulation domain AMD07_RS19110 SM01350 AMD07_RS19110 AMD07_RS19165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD07_RS19165 SM00245 tail specific protease AMD07_RS19170 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD07_RS19190 SM00936 Penicillin-binding protein 5, C-terminal domain AMD07_RS19210 SM00710 Parallel beta-helix repeats AMD07_RS19235 SM00268 Actin AMD07_RS19245 SM00382 ATPases associated with a variety of cellular activities AMD07_RS19255 SM00829 Enoylreductase AMD07_RS19270 SM00062 Bacterial periplasmic substrate-binding proteins AMD07_RS19270 SM00248 ankyrin repeats AMD07_RS19275 SM00564 beta-propeller repeat AMD07_RS19295 SM01263 AMD07_RS19295 AMD07_RS19300 SM00267 diguanylate cyclase AMD07_RS19330 SM00382 ATPases associated with a variety of cellular activities AMD07_RS19330 SM01086 C-terminal, D2-small domain, of ClpB protein AMD07_RS19410 SM00448 cheY-homologous receiver domain AMD07_RS19410 SM00850 LytTr DNA-binding domain AMD07_RS19440 SM00267 diguanylate cyclase AMD07_RS19450 SM00637 AMD07_RS19450 AMD07_RS19455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS19455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS19455 SM01049 AMD07_RS19455 AMD07_RS19460 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS19460 SM00091 PAS domain AMD07_RS19460 SM00267 diguanylate cyclase AMD07_RS19470 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS19485 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD07_RS19485 SM01232 AMD07_RS19485 AMD07_RS19525 SM00382 ATPases associated with a variety of cellular activities AMD07_RS19535 SM00062 Bacterial periplasmic substrate-binding proteins AMD07_RS19660 SM00387 Histidine kinase-like ATPases AMD07_RS19660 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS19670 SM00382 ATPases associated with a variety of cellular activities AMD07_RS19745 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS19745 SM00387 Histidine kinase-like ATPases AMD07_RS19780 SM00506 Appr-1"-p processing enzyme AMD07_RS19820 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD07_RS19845 SM00849 Metallo-beta-lactamase superfamily AMD07_RS19860 SM00382 ATPases associated with a variety of cellular activities AMD07_RS19930 SM00861 Transketolase, pyrimidine binding domain AMD07_RS19945 SM00028 Tetratricopeptide repeats AMD07_RS19945 SM00327 von Willebrand factor (vWF) type A domain AMD07_RS19950 SM00327 von Willebrand factor (vWF) type A domain AMD07_RS19965 SM00382 ATPases associated with a variety of cellular activities AMD07_RS19970 SM00965 Secretin and TonB N terminus short domain AMD07_RS20020 SM00487 DEAD-like helicases superfamily AMD07_RS20020 SM00490 helicase superfamily c-terminal domain AMD07_RS20030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD07_RS20030 SM00954 Region found in RelA / SpoT proteins AMD07_RS20035 SM01409 AMD07_RS20035 AMD07_RS20040 SM00072 Guanylate kinase homologues. AMD07_RS20065 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD07_RS20090 SM01011 Aminopeptidase P, N-terminal domain AMD07_RS20160 SM00028 Tetratricopeptide repeats AMD07_RS20160 SM00382 ATPases associated with a variety of cellular activities AMD07_RS20160 SM00421 helix_turn_helix, Lux Regulon AMD07_RS20230 SM00464 Found in ATP-dependent protease La (LON) AMD07_RS20280 SM00342 helix_turn_helix, arabinose operon control protein AMD07_RS20285 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS20300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS20330 SM00917 LeuA allosteric (dimerisation) domain AMD07_RS20335 SM01329 AMD07_RS20335 AMD07_RS20355 SM00267 diguanylate cyclase AMD07_RS20405 SM00919 Malic enzyme, NAD binding domain AMD07_RS20405 SM01274 AMD07_RS20405 AMD07_RS20420 SM00387 Histidine kinase-like ATPases AMD07_RS20420 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS20420 SM00448 cheY-homologous receiver domain AMD07_RS20455 SM00421 helix_turn_helix, Lux Regulon AMD07_RS20455 SM00448 cheY-homologous receiver domain AMD07_RS20465 SM00387 Histidine kinase-like ATPases AMD07_RS20465 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS20470 SM00448 cheY-homologous receiver domain AMD07_RS20470 SM00862 Transcriptional regulatory protein, C terminal AMD07_RS20485 SM00822 AMD07_RS20485 AMD07_RS20490 SM00354 helix_turn _helix lactose operon repressor AMD07_RS20505 SM00642 Alpha-amylase domain AMD07_RS20515 SM01154 AMD07_RS20515 AMD07_RS20550 SM00450 Rhodanese Homology Domain AMD07_RS20695 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD07_RS20695 SM00866 AMD07_RS20695 AMD07_RS20755 SM00382 ATPases associated with a variety of cellular activities AMD07_RS20785 SM01211 AMD07_RS20785 AMD07_RS20850 SM00656 AMD07_RS20850 AMD07_RS20880 SM00528 Domain in histone-like proteins of HNS family AMD07_RS20895 SM00382 ATPases associated with a variety of cellular activities AMD07_RS20925 SM00882 Coenzyme A transferase AMD07_RS20930 SM00882 Coenzyme A transferase AMD07_RS20945 SM00984 UDP binding domain AMD07_RS20970 SM00893 Electron transfer flavoprotein domain AMD07_RS20975 SM00893 Electron transfer flavoprotein domain AMD07_RS21050 SM00382 ATPases associated with a variety of cellular activities AMD07_RS21065 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD07_RS21100 SM00487 DEAD-like helicases superfamily AMD07_RS21100 SM00490 helicase superfamily c-terminal domain AMD07_RS21135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS21170 SM00825 Beta-ketoacyl synthase AMD07_RS21240 SM00382 ATPases associated with a variety of cellular activities AMD07_RS21260 SM00382 ATPases associated with a variety of cellular activities AMD07_RS21260 SM00448 cheY-homologous receiver domain AMD07_RS21265 SM00387 Histidine kinase-like ATPases AMD07_RS21280 SM00830 Chorismate mutase type II AMD07_RS21290 SM00382 ATPases associated with a variety of cellular activities AMD07_RS21360 SM00986 Uracil DNA glycosylase superfamily AMD07_RS21360 SM00987 UreE urease accessory protein, C-terminal domain AMD07_RS21400 SM00382 ATPases associated with a variety of cellular activities AMD07_RS21400 SM00930 AMD07_RS21400 AMD07_RS21420 SM00387 Histidine kinase-like ATPases AMD07_RS21420 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS21420 SM00448 cheY-homologous receiver domain AMD07_RS21475 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS21475 SM00091 PAS domain AMD07_RS21475 SM00387 Histidine kinase-like ATPases AMD07_RS21475 SM00388 His Kinase A (phosphoacceptor) domain AMD07_RS21475 SM00448 cheY-homologous receiver domain AMD07_RS21495 SM01005 Alanine racemase, C-terminal domain AMD07_RS21505 SM00344 helix_turn_helix ASNC type AMD07_RS21560 SM00382 ATPases associated with a variety of cellular activities AMD07_RS21570 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AMD07_RS21575 SM00986 Uracil DNA glycosylase superfamily AMD07_RS21575 SM00987 UreE urease accessory protein, C-terminal domain AMD07_RS21580 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD07_RS21645 SM00448 cheY-homologous receiver domain AMD07_RS21645 SM00850 LytTr DNA-binding domain AMD07_RS21650 SM00387 Histidine kinase-like ATPases AMD07_RS21690 SM00091 PAS domain AMD07_RS21690 SM00138 Methyltransferase, chemotaxis proteins AMD07_RS21690 SM00911 HWE histidine kinase AMD07_RS21695 SM00448 cheY-homologous receiver domain AMD07_RS21705 SM00382 ATPases associated with a variety of cellular activities AMD07_RS21705 SM00448 cheY-homologous receiver domain AMD07_RS21760 SM00382 ATPases associated with a variety of cellular activities AMD07_RS21835 SM00382 ATPases associated with a variety of cellular activities AMD07_RS21840 SM00631 AMD07_RS21840 AMD07_RS21865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD07_RS21865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD07_RS21870 SM00477 DNA/RNA non-specific endonuclease AMD07_RS21870 SM00892 DNA/RNA non-specific endonuclease AMD07_RS21935 SM00382 ATPases associated with a variety of cellular activities AMD07_RS22150 SM00382 ATPases associated with a variety of cellular activities AMD07_RS22295 SM00257 Lysin motif AMD07_RS22320 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD07_RS22320 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD07_RS22320 SM00493 AMD07_RS22320 AMD07_RS22375 SM00487 DEAD-like helicases superfamily AMD07_RS22375 SM00490 helicase superfamily c-terminal domain AMD07_RS22410 SM00986 Uracil DNA glycosylase superfamily AMD07_RS22410 SM00987 UreE urease accessory protein, C-terminal domain AMD07_RS22415 SM00448 cheY-homologous receiver domain AMD07_RS22425 SM00382 ATPases associated with a variety of cellular activities AMD07_RS22430 SM00487 DEAD-like helicases superfamily AMD07_RS22430 SM00490 helicase superfamily c-terminal domain AMD07_RS22440 SM00357 Cold shock protein domain AMD07_RS22440 SM00382 ATPases associated with a variety of cellular activities AMD07_RS22440 SM00959 Rho termination factor, N-terminal domain AMD07_RS22470 SM00487 DEAD-like helicases superfamily AMD07_RS22510 SM00382 ATPases associated with a variety of cellular activities AMD07_RS22520 SM00257 Lysin motif AMD07_RS22550 SM01150 AMD07_RS22550 AMD07_RS22595 SM00644 AMD07_RS22595 AMD07_RS22605 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD07_RS22640 SM01217 AMD07_RS22640 AMD07_RS22645 SM00905 Dihydroneopterin aldolase AMD07_RS22670 SM00400 zinc finger AMD07_RS22670 SM00493 AMD07_RS22670 AMD07_RS22670 SM00766 DNA primase DnaG DnaB-binding AMD07_RS22775 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS22775 SM00091 PAS domain AMD07_RS22830 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD07_RS22865 SM00155 Phospholipase D. Active site motifs. AMD07_RS22950 SM00796 Allophanate hydrolase subunit 1 AMD07_RS22950 SM00797 Allophanate hydrolase subunit 2 AMD07_RS22950 SM00878 Biotin carboxylase C-terminal domain AMD07_RS23010 SM00382 ATPases associated with a variety of cellular activities AMD07_RS23060 SM00829 Enoylreductase AMD07_RS23100 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD07_RS23100 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD07_RS23100 SM00091 PAS domain AMD07_RS23100 SM00267 diguanylate cyclase AMD07_RS23130 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD07_RS23155 SM00014 Acid phosphatase homologues AMD07_RS23165 SM00028 Tetratricopeptide repeats