AMD06_RS00370 SM00633 Glycosyl hydrolase family 10 AMD06_RS00400 SM00382 ATPases associated with a variety of cellular activities AMD06_RS00400 SM00760 Bacterial dnaA protein helix-turn-helix domain AMD06_RS00405 SM00480 DNA polymerase III beta subunit AMD06_RS00415 SM00387 Histidine kinase-like ATPases AMD06_RS00415 SM00433 TopoisomeraseII AMD06_RS00430 SM00028 Tetratricopeptide repeats AMD06_RS00465 SM00155 Phospholipase D. Active site motifs. AMD06_RS00480 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD06_RS00510 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD06_RS00510 SM00245 tail specific protease AMD06_RS00590 SM00633 Glycosyl hydrolase family 10 AMD06_RS00605 SM00633 Glycosyl hydrolase family 10 AMD06_RS00620 SM00633 Glycosyl hydrolase family 10 AMD06_RS00645 SM01007 Class II Aldolase and Adducin N-terminal domain AMD06_RS00675 SM00612 AMD06_RS00675 AMD06_RS00695 SM00758 AMD06_RS00695 AMD06_RS00695 SM01217 AMD06_RS00695 AMD06_RS00705 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD06_RS00720 SM00354 helix_turn _helix lactose operon repressor AMD06_RS00795 SM00382 ATPases associated with a variety of cellular activities AMD06_RS00805 SM00836 DALR anticodon binding domain AMD06_RS00855 SM00564 beta-propeller repeat AMD06_RS00885 SM00091 PAS domain AMD06_RS00885 SM00387 Histidine kinase-like ATPases AMD06_RS00885 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS00885 SM00448 cheY-homologous receiver domain AMD06_RS00895 SM00346 helix_turn_helix isocitrate lyase regulation AMD06_RS00915 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD06_RS00970 SM00421 helix_turn_helix, Lux Regulon AMD06_RS00970 SM00448 cheY-homologous receiver domain AMD06_RS01110 SM00155 Phospholipase D. Active site motifs. AMD06_RS01130 SM01266 AMD06_RS01130 AMD06_RS01140 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS01180 SM00382 ATPases associated with a variety of cellular activities AMD06_RS01180 SM01086 C-terminal, D2-small domain, of ClpB protein AMD06_RS01205 SM00915 Jacalin-like lectin domain AMD06_RS01215 SM00965 Secretin and TonB N terminus short domain AMD06_RS01235 SM00220 Serine/Threonine protein kinases, catalytic domain AMD06_RS01245 SM00028 Tetratricopeptide repeats AMD06_RS01260 SM00240 Forkhead associated domain AMD06_RS01285 SM00331 Sigma factor PP2C-like phosphatases AMD06_RS01285 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD06_RS01305 SM00912 haemagglutination activity domain AMD06_RS01320 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD06_RS01320 SM00474 3'-5' exonuclease AMD06_RS01320 SM00475 5'-3' exonuclease AMD06_RS01320 SM00482 DNA polymerase A domain AMD06_RS01375 SM00563 Phosphate acyltransferases AMD06_RS01415 SM00822 AMD06_RS01415 AMD06_RS01440 SM00825 Beta-ketoacyl synthase AMD06_RS01450 SM00248 ankyrin repeats AMD06_RS01475 SM01057 Eukaryotic-type carbonic anhydrase AMD06_RS01480 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD06_RS01480 SM00924 MgtE intracellular N domain AMD06_RS01485 SM00881 CoA binding domain AMD06_RS01545 SM00382 ATPases associated with a variety of cellular activities AMD06_RS01555 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS01595 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS01605 SM00382 ATPases associated with a variety of cellular activities AMD06_RS01625 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD06_RS01675 SM01004 Delta-aminolevulinic acid dehydratase AMD06_RS01690 SM00477 DNA/RNA non-specific endonuclease AMD06_RS01690 SM00892 DNA/RNA non-specific endonuclease AMD06_RS01720 SM00491 AMD06_RS01720 AMD06_RS01725 SM01060 AMD06_RS01725 AMD06_RS01730 SM00248 ankyrin repeats AMD06_RS01750 SM00448 cheY-homologous receiver domain AMD06_RS01750 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS01755 SM00387 Histidine kinase-like ATPases AMD06_RS01755 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS01820 SM00960 Roadblock/LC7 domain AMD06_RS01850 SM00849 Metallo-beta-lactamase superfamily AMD06_RS01890 SM00382 ATPases associated with a variety of cellular activities AMD06_RS01905 SM00421 helix_turn_helix, Lux Regulon AMD06_RS01905 SM00448 cheY-homologous receiver domain AMD06_RS01920 SM01060 AMD06_RS01920 AMD06_RS01965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD06_RS01985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS01985 SM00387 Histidine kinase-like ATPases AMD06_RS01985 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS01990 SM00448 cheY-homologous receiver domain AMD06_RS01990 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS02040 SM00244 prohibitin homologues AMD06_RS02070 SM00052 Putative diguanylate phosphodiesterase AMD06_RS02085 SM00382 ATPases associated with a variety of cellular activities AMD06_RS02095 SM00938 Nitrogen regulatory protein P-II AMD06_RS02140 SM00823 Phosphopantetheine attachment site AMD06_RS02140 SM00824 Thioesterase AMD06_RS02170 SM00836 DALR anticodon binding domain AMD06_RS02170 SM01016 Arginyl tRNA synthetase N terminal dom AMD06_RS02200 SM01259 AMD06_RS02200 AMD06_RS02220 SM00470 ParB-like nuclease domain AMD06_RS02265 SM00363 S4 RNA-binding domain AMD06_RS02295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD06_RS02295 SM01232 AMD06_RS02295 AMD06_RS02310 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS02310 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS02345 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD06_RS02370 SM00354 helix_turn _helix lactose operon repressor AMD06_RS02380 SM00563 Phosphate acyltransferases AMD06_RS02385 SM00829 Enoylreductase AMD06_RS02405 SM00382 ATPases associated with a variety of cellular activities AMD06_RS02415 SM00829 Enoylreductase AMD06_RS02540 SM00382 ATPases associated with a variety of cellular activities AMD06_RS02655 SM00487 DEAD-like helicases superfamily AMD06_RS02655 SM00490 helicase superfamily c-terminal domain AMD06_RS02675 SM00822 AMD06_RS02675 AMD06_RS02935 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AMD06_RS02960 SM00421 helix_turn_helix, Lux Regulon AMD06_RS02960 SM00448 cheY-homologous receiver domain AMD06_RS02980 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS03060 SM00642 Alpha-amylase domain AMD06_RS03065 SM00642 Alpha-amylase domain AMD06_RS03070 SM00642 Alpha-amylase domain AMD06_RS03120 SM00354 helix_turn _helix lactose operon repressor AMD06_RS03160 SM00344 helix_turn_helix ASNC type AMD06_RS03180 SM00382 ATPases associated with a variety of cellular activities AMD06_RS03195 SM00382 ATPases associated with a variety of cellular activities AMD06_RS03230 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS03260 SM00855 Phosphoglycerate mutase family AMD06_RS03265 SM00867 YceI-like domain AMD06_RS03270 SM00155 Phospholipase D. Active site motifs. AMD06_RS03280 SM00563 Phosphate acyltransferases AMD06_RS03295 SM00028 Tetratricopeptide repeats AMD06_RS03320 SM01230 AMD06_RS03320 AMD06_RS03325 SM00938 Nitrogen regulatory protein P-II AMD06_RS03335 SM00387 Histidine kinase-like ATPases AMD06_RS03335 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS03340 SM00382 ATPases associated with a variety of cellular activities AMD06_RS03340 SM00448 cheY-homologous receiver domain AMD06_RS03400 SM00450 Rhodanese Homology Domain AMD06_RS03425 SM00387 Histidine kinase-like ATPases AMD06_RS03425 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS03430 SM00382 ATPases associated with a variety of cellular activities AMD06_RS03430 SM00448 cheY-homologous receiver domain AMD06_RS03540 SM00563 Phosphate acyltransferases AMD06_RS03575 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS03600 SM00100 Cyclic nucleotide-monophosphate binding domain AMD06_RS03600 SM00267 diguanylate cyclase AMD06_RS03625 SM00878 Biotin carboxylase C-terminal domain AMD06_RS03650 SM00953 AMD06_RS03650 AMD06_RS03690 SM00833 Cobalamin synthesis protein cobW C-terminal domain AMD06_RS03720 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD06_RS03755 SM00829 Enoylreductase AMD06_RS03785 SM00487 DEAD-like helicases superfamily AMD06_RS03785 SM00490 helicase superfamily c-terminal domain AMD06_RS03785 SM00847 Helicase associated domain (HA2) Add an annotation AMD06_RS03920 SM00422 helix_turn_helix, mercury resistance AMD06_RS03955 SM00448 cheY-homologous receiver domain AMD06_RS03955 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS03960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS03960 SM00387 Histidine kinase-like ATPases AMD06_RS03960 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS04105 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD06_RS04110 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD06_RS04130 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS04160 SM00420 helix_turn_helix, Deoxyribose operon repressor AMD06_RS04160 SM01134 AMD06_RS04160 AMD06_RS04175 SM00882 Coenzyme A transferase AMD06_RS04180 SM00882 Coenzyme A transferase AMD06_RS04200 SM00998 Adenylosuccinate lyase C-terminus AMD06_RS04220 SM00346 helix_turn_helix isocitrate lyase regulation AMD06_RS04225 SM00090 RIO-like kinase AMD06_RS04240 SM01228 AMD06_RS04240 AMD06_RS04295 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD06_RS04295 SM00876 Biotin and Thiamin Synthesis associated domain AMD06_RS04315 SM00369 Leucine-rich repeats, typical (most populated) subfamily AMD06_RS04410 SM00382 ATPases associated with a variety of cellular activities AMD06_RS04470 SM00267 diguanylate cyclase AMD06_RS04480 SM00642 Alpha-amylase domain AMD06_RS04485 SM00642 Alpha-amylase domain AMD06_RS04495 SM00642 Alpha-amylase domain AMD06_RS04505 SM00642 Alpha-amylase domain AMD06_RS04555 SM00822 AMD06_RS04555 AMD06_RS04565 SM00487 DEAD-like helicases superfamily AMD06_RS04565 SM00490 helicase superfamily c-terminal domain AMD06_RS04575 SM00326 Src homology 3 domains AMD06_RS04580 SM00861 Transketolase, pyrimidine binding domain AMD06_RS04590 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AMD06_RS04610 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD06_RS04705 SM00271 DnaJ molecular chaperone homology domain AMD06_RS04725 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMD06_RS04745 SM00903 Flavin reductase like domain AMD06_RS04765 SM00100 Cyclic nucleotide-monophosphate binding domain AMD06_RS04765 SM00419 helix_turn_helix, cAMP Regulatory protein AMD06_RS04820 SM00387 Histidine kinase-like ATPases AMD06_RS04820 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS04820 SM00448 cheY-homologous receiver domain AMD06_RS04825 SM00052 Putative diguanylate phosphodiesterase AMD06_RS04825 SM00267 diguanylate cyclase AMD06_RS04825 SM00448 cheY-homologous receiver domain AMD06_RS04885 SM00563 Phosphate acyltransferases AMD06_RS04910 SM01209 AMD06_RS04910 AMD06_RS04910 SM01210 AMD06_RS04910 AMD06_RS04920 SM00798 AICARFT/IMPCHase bienzyme AMD06_RS04920 SM00851 MGS-like domain AMD06_RS04935 SM00195 Dual specificity phosphatase, catalytic domain AMD06_RS04955 SM00563 Phosphate acyltransferases AMD06_RS04980 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS05010 SM00878 Biotin carboxylase C-terminal domain AMD06_RS05040 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS05050 SM00234 in StAR and phosphatidylcholine transfer protein AMD06_RS05070 SM00883 Chaperonin 10 Kd subunit AMD06_RS05130 SM00944 Pro-kumamolisin, activation domain AMD06_RS05145 SM00867 YceI-like domain AMD06_RS05200 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD06_RS05210 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD06_RS05210 SM00895 AMD06_RS05210 AMD06_RS05230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS05230 SM00331 Sigma factor PP2C-like phosphatases AMD06_RS05275 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS05350 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD06_RS05380 SM00354 helix_turn _helix lactose operon repressor AMD06_RS05435 SM00869 Autotransporter beta-domain AMD06_RS05480 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS05585 SM00382 ATPases associated with a variety of cellular activities AMD06_RS05620 SM00318 Staphylococcal nuclease homologues AMD06_RS05630 SM00528 Domain in histone-like proteins of HNS family AMD06_RS05635 SM00642 Alpha-amylase domain AMD06_RS05650 SM00448 cheY-homologous receiver domain AMD06_RS05650 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS05655 SM00387 Histidine kinase-like ATPases AMD06_RS05655 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS05715 SM00382 ATPases associated with a variety of cellular activities AMD06_RS05715 SM00448 cheY-homologous receiver domain AMD06_RS05720 SM00387 Histidine kinase-like ATPases AMD06_RS05720 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS05730 SM00881 CoA binding domain AMD06_RS05740 SM01126 AMD06_RS05740 AMD06_RS05965 SM00448 cheY-homologous receiver domain AMD06_RS05970 SM00387 Histidine kinase-like ATPases AMD06_RS06065 SM00387 Histidine kinase-like ATPases AMD06_RS06085 SM00382 ATPases associated with a variety of cellular activities AMD06_RS06085 SM00994 ClpX C4-type zinc finger AMD06_RS06085 SM01086 C-terminal, D2-small domain, of ClpB protein AMD06_RS06090 SM00382 ATPases associated with a variety of cellular activities AMD06_RS06090 SM00464 Found in ATP-dependent protease La (LON) AMD06_RS06095 SM00411 bacterial (prokaryotic) histone like domain AMD06_RS06120 SM00257 Lysin motif AMD06_RS06125 SM00849 Metallo-beta-lactamase superfamily AMD06_RS06140 SM00479 AMD06_RS06140 AMD06_RS06145 SM00331 Sigma factor PP2C-like phosphatases AMD06_RS06145 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD06_RS06170 SM00849 Metallo-beta-lactamase superfamily AMD06_RS06175 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD06_RS06240 SM00382 ATPases associated with a variety of cellular activities AMD06_RS06250 SM00493 AMD06_RS06250 AMD06_RS06265 SM00460 Transglutaminase/protease-like homologues AMD06_RS06275 SM00382 ATPases associated with a variety of cellular activities AMD06_RS06325 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD06_RS06330 SM00822 AMD06_RS06330 AMD06_RS06340 SM00825 Beta-ketoacyl synthase AMD06_RS06375 SM00382 ATPases associated with a variety of cellular activities AMD06_RS06415 SM01359 AMD06_RS06415 AMD06_RS06415 SM01360 AMD06_RS06415 AMD06_RS06450 SM00271 DnaJ molecular chaperone homology domain AMD06_RS06455 SM00448 cheY-homologous receiver domain AMD06_RS06460 SM00244 prohibitin homologues AMD06_RS06465 SM00244 prohibitin homologues AMD06_RS06470 SM01321 AMD06_RS06470 AMD06_RS06475 SM00788 Adenylosuccinate synthetase AMD06_RS06490 SM00822 AMD06_RS06490 AMD06_RS06545 SM00220 Serine/Threonine protein kinases, catalytic domain AMD06_RS06565 SM00855 Phosphoglycerate mutase family AMD06_RS06620 SM00052 Putative diguanylate phosphodiesterase AMD06_RS06625 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD06_RS06635 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD06_RS06640 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD06_RS06655 SM00974 AMD06_RS06655 AMD06_RS06675 SM00966 SpoVT / AbrB like domain AMD06_RS06695 SM00481 DNA polymerase alpha chain like domain AMD06_RS06705 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD06_RS06740 SM00091 PAS domain AMD06_RS06740 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS06765 SM00487 DEAD-like helicases superfamily AMD06_RS06765 SM00490 helicase superfamily c-terminal domain AMD06_RS06765 SM00982 AMD06_RS06765 AMD06_RS06765 SM01058 CarD-like/TRCF domain AMD06_RS06780 SM00448 cheY-homologous receiver domain AMD06_RS06780 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS06785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS06785 SM00387 Histidine kinase-like ATPases AMD06_RS06785 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS06790 SM00645 Papain family cysteine protease AMD06_RS06860 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS06925 SM00829 Enoylreductase AMD06_RS06945 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS06945 SM00478 endonuclease III AMD06_RS06945 SM01009 AlkA N-terminal domain AMD06_RS06990 SM00487 DEAD-like helicases superfamily AMD06_RS06990 SM00490 helicase superfamily c-terminal domain AMD06_RS06995 SM00052 Putative diguanylate phosphodiesterase AMD06_RS06995 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS06995 SM00091 PAS domain AMD06_RS06995 SM00267 diguanylate cyclase AMD06_RS07000 SM00363 S4 RNA-binding domain AMD06_RS07005 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS07005 SM00267 diguanylate cyclase AMD06_RS07040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS07040 SM00387 Histidine kinase-like ATPases AMD06_RS07040 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS07045 SM00448 cheY-homologous receiver domain AMD06_RS07045 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS07075 SM00382 ATPases associated with a variety of cellular activities AMD06_RS07210 SM00316 Ribosomal protein S1-like RNA-binding domain AMD06_RS07245 SM01351 AMD06_RS07245 AMD06_RS07260 SM00977 TilS substrate C-terminal domain AMD06_RS07265 SM00098 Alkaline phosphatase homologues AMD06_RS07320 SM01160 AMD06_RS07320 AMD06_RS07385 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD06_RS07415 SM00257 Lysin motif AMD06_RS07445 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD06_RS07520 SM00052 Putative diguanylate phosphodiesterase AMD06_RS07520 SM00267 diguanylate cyclase AMD06_RS07520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS07535 SM00822 AMD06_RS07535 AMD06_RS07580 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD06_RS07585 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD06_RS07635 SM00316 Ribosomal protein S1-like RNA-binding domain AMD06_RS07635 SM00322 K homology RNA-binding domain AMD06_RS07655 SM01387 AMD06_RS07655 AMD06_RS07660 SM00316 Ribosomal protein S1-like RNA-binding domain AMD06_RS07660 SM00322 K homology RNA-binding domain AMD06_RS07680 SM01001 AIR carboxylase AMD06_RS07805 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS07845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS07850 SM00421 helix_turn_helix, Lux Regulon AMD06_RS07850 SM00448 cheY-homologous receiver domain AMD06_RS07855 SM00387 Histidine kinase-like ATPases AMD06_RS07860 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS07905 SM00448 cheY-homologous receiver domain AMD06_RS07930 SM00052 Putative diguanylate phosphodiesterase AMD06_RS07935 SM00869 Autotransporter beta-domain AMD06_RS07940 SM00421 helix_turn_helix, Lux Regulon AMD06_RS07940 SM00448 cheY-homologous receiver domain AMD06_RS07945 SM00387 Histidine kinase-like ATPases AMD06_RS07945 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS07970 SM00869 Autotransporter beta-domain AMD06_RS07990 SM00448 cheY-homologous receiver domain AMD06_RS07990 SM00850 LytTr DNA-binding domain AMD06_RS08140 SM01034 Sensors of blue-light using FAD AMD06_RS08180 SM00363 S4 RNA-binding domain AMD06_RS08185 SM00316 Ribosomal protein S1-like RNA-binding domain AMD06_RS08190 SM00421 helix_turn_helix, Lux Regulon AMD06_RS08190 SM00448 cheY-homologous receiver domain AMD06_RS08195 SM00450 Rhodanese Homology Domain AMD06_RS08215 SM00984 UDP binding domain AMD06_RS08250 SM00823 Phosphopantetheine attachment site AMD06_RS08305 SM00155 Phospholipase D. Active site motifs. AMD06_RS08315 SM00490 helicase superfamily c-terminal domain AMD06_RS08325 SM00490 helicase superfamily c-terminal domain AMD06_RS08330 SM00382 ATPases associated with a variety of cellular activities AMD06_RS08340 SM00487 DEAD-like helicases superfamily AMD06_RS08355 SM00382 ATPases associated with a variety of cellular activities AMD06_RS08410 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD06_RS08410 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD06_RS08410 SM00493 AMD06_RS08410 AMD06_RS08495 SM00487 DEAD-like helicases superfamily AMD06_RS08620 SM00953 AMD06_RS08620 AMD06_RS08680 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS08690 SM00382 ATPases associated with a variety of cellular activities AMD06_RS08715 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD06_RS08715 SM00465 GIY-YIG type nucleases (URI domain) AMD06_RS08725 SM00226 Low molecular weight phosphatase family AMD06_RS08740 SM00382 ATPases associated with a variety of cellular activities AMD06_RS08755 SM00849 Metallo-beta-lactamase superfamily AMD06_RS08765 SM00382 ATPases associated with a variety of cellular activities AMD06_RS08815 SM00382 ATPases associated with a variety of cellular activities AMD06_RS08900 SM00448 cheY-homologous receiver domain AMD06_RS08905 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS08905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS08905 SM00091 PAS domain AMD06_RS08905 SM00387 Histidine kinase-like ATPases AMD06_RS08905 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS08905 SM00448 cheY-homologous receiver domain AMD06_RS08910 SM00316 Ribosomal protein S1-like RNA-binding domain AMD06_RS08910 SM00732 Likely ribonuclease with RNase H fold. AMD06_RS08980 SM00479 AMD06_RS08980 AMD06_RS08990 SM00529 Helix-turn-helix diphteria tox regulatory element AMD06_RS09015 SM00852 Probable molybdopterin binding domain AMD06_RS09060 SM00450 Rhodanese Homology Domain AMD06_RS09065 SM00852 Probable molybdopterin binding domain AMD06_RS09070 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09075 SM00564 beta-propeller repeat AMD06_RS09090 SM00028 Tetratricopeptide repeats AMD06_RS09100 SM00562 AMD06_RS09100 AMD06_RS09130 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09150 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09150 SM00843 AMD06_RS09150 AMD06_RS09170 SM00316 Ribosomal protein S1-like RNA-binding domain AMD06_RS09175 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09175 SM01086 C-terminal, D2-small domain, of ClpB protein AMD06_RS09200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS09210 SM00052 Putative diguanylate phosphodiesterase AMD06_RS09210 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS09210 SM00091 PAS domain AMD06_RS09210 SM00267 diguanylate cyclase AMD06_RS09215 SM00091 PAS domain AMD06_RS09215 SM00387 Histidine kinase-like ATPases AMD06_RS09220 SM00052 Putative diguanylate phosphodiesterase AMD06_RS09220 SM00267 diguanylate cyclase AMD06_RS09220 SM00448 cheY-homologous receiver domain AMD06_RS09225 SM00387 Histidine kinase-like ATPases AMD06_RS09240 SM00858 AMD06_RS09240 AMD06_RS09245 SM00260 Two component signalling adaptor domain AMD06_RS09245 SM00448 cheY-homologous receiver domain AMD06_RS09290 SM00047 Lysozyme subfamily 2 AMD06_RS09330 SM00421 helix_turn_helix, Lux Regulon AMD06_RS09330 SM00448 cheY-homologous receiver domain AMD06_RS09340 SM00448 cheY-homologous receiver domain AMD06_RS09345 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09370 SM00822 AMD06_RS09370 AMD06_RS09420 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09475 SM00267 diguanylate cyclase AMD06_RS09485 SM00267 diguanylate cyclase AMD06_RS09490 SM00052 Putative diguanylate phosphodiesterase AMD06_RS09490 SM00267 diguanylate cyclase AMD06_RS09505 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09505 SM00962 SRP54-type protein, GTPase domain AMD06_RS09520 SM00448 cheY-homologous receiver domain AMD06_RS09530 SM00073 Histidine Phosphotransfer domain AMD06_RS09530 SM00260 Two component signalling adaptor domain AMD06_RS09530 SM00387 Histidine kinase-like ATPases AMD06_RS09530 SM01231 AMD06_RS09530 AMD06_RS09550 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS09585 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09755 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD06_RS09755 SM01240 AMD06_RS09755 AMD06_RS09780 SM00822 AMD06_RS09780 AMD06_RS09790 SM00028 Tetratricopeptide repeats AMD06_RS09800 SM00411 bacterial (prokaryotic) histone like domain AMD06_RS09805 SM00316 Ribosomal protein S1-like RNA-binding domain AMD06_RS09880 SM00354 helix_turn _helix lactose operon repressor AMD06_RS09905 SM00363 S4 RNA-binding domain AMD06_RS09930 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09980 SM00357 Cold shock protein domain AMD06_RS09985 SM00382 ATPases associated with a variety of cellular activities AMD06_RS09990 SM00382 ATPases associated with a variety of cellular activities AMD06_RS10020 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD06_RS10030 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD06_RS10045 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD06_RS10085 SM00840 AMD06_RS10085 AMD06_RS10110 SM01234 AMD06_RS10110 AMD06_RS10150 SM00849 Metallo-beta-lactamase superfamily AMD06_RS10205 SM00841 Elongation factor P, C-terminal AMD06_RS10205 SM01185 AMD06_RS10205 AMD06_RS10215 SM00052 Putative diguanylate phosphodiesterase AMD06_RS10215 SM00267 diguanylate cyclase AMD06_RS10215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS10250 SM00382 ATPases associated with a variety of cellular activities AMD06_RS10255 SM00487 DEAD-like helicases superfamily AMD06_RS10255 SM00490 helicase superfamily c-terminal domain AMD06_RS10280 SM00357 Cold shock protein domain AMD06_RS10285 SM01322 AMD06_RS10285 AMD06_RS10295 SM00052 Putative diguanylate phosphodiesterase AMD06_RS10295 SM00267 diguanylate cyclase AMD06_RS10310 SM00822 AMD06_RS10310 AMD06_RS10330 SM00853 MutL C terminal dimerisation domain AMD06_RS10330 SM01340 AMD06_RS10330 AMD06_RS10335 SM00646 AMD06_RS10335 AMD06_RS10370 SM00474 3'-5' exonuclease AMD06_RS10385 SM00528 Domain in histone-like proteins of HNS family AMD06_RS10470 SM00857 Resolvase, N terminal domain AMD06_RS10540 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS10540 SM00267 diguanylate cyclase AMD06_RS10545 SM00260 Two component signalling adaptor domain AMD06_RS10550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS10550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS10560 SM00487 DEAD-like helicases superfamily AMD06_RS10560 SM00490 helicase superfamily c-terminal domain AMD06_RS10615 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD06_RS10640 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD06_RS10640 SM01091 Transporter associated domain AMD06_RS10675 SM00382 ATPases associated with a variety of cellular activities AMD06_RS10705 SM01230 AMD06_RS10705 AMD06_RS10715 SM01230 AMD06_RS10715 AMD06_RS10725 SM00267 diguanylate cyclase AMD06_RS10725 SM00448 cheY-homologous receiver domain AMD06_RS10780 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS10780 SM00091 PAS domain AMD06_RS10780 SM00387 Histidine kinase-like ATPases AMD06_RS10780 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS10780 SM00448 cheY-homologous receiver domain AMD06_RS10780 SM01079 AMD06_RS10780 AMD06_RS10785 SM00448 cheY-homologous receiver domain AMD06_RS10785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD06_RS10815 SM00354 helix_turn _helix lactose operon repressor AMD06_RS10875 SM01323 AMD06_RS10875 AMD06_RS10890 SM00344 helix_turn_helix ASNC type AMD06_RS10970 SM00387 Histidine kinase-like ATPases AMD06_RS11015 SM00944 Pro-kumamolisin, activation domain AMD06_RS11065 SM01130 AMD06_RS11065 AMD06_RS11090 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS11095 SM00382 ATPases associated with a variety of cellular activities AMD06_RS11095 SM00962 SRP54-type protein, GTPase domain AMD06_RS11095 SM00963 SRP54-type protein, helical bundle domain AMD06_RS11100 SM00478 endonuclease III AMD06_RS11110 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS11110 SM00091 PAS domain AMD06_RS11110 SM00387 Histidine kinase-like ATPases AMD06_RS11110 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS11110 SM00448 cheY-homologous receiver domain AMD06_RS11125 SM00465 GIY-YIG type nucleases (URI domain) AMD06_RS11155 SM00507 HNH nucleases AMD06_RS11160 SM00861 Transketolase, pyrimidine binding domain AMD06_RS11185 SM00849 Metallo-beta-lactamase superfamily AMD06_RS11270 SM00422 helix_turn_helix, mercury resistance AMD06_RS11275 SM00411 bacterial (prokaryotic) histone like domain AMD06_RS11280 SM00873 B3/4 domain AMD06_RS11280 SM00874 tRNA synthetase B5 domain AMD06_RS11280 SM00896 Ferredoxin-fold anticodon binding domain AMD06_RS11305 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD06_RS11310 SM00354 helix_turn _helix lactose operon repressor AMD06_RS11315 SM00642 Alpha-amylase domain AMD06_RS11345 SM00642 Alpha-amylase domain AMD06_RS11385 SM00758 AMD06_RS11385 AMD06_RS11430 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD06_RS11455 SM01130 AMD06_RS11455 AMD06_RS11475 SM00670 Large family of predicted nucleotide-binding domains AMD06_RS11530 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS11530 SM00091 PAS domain AMD06_RS11530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS11545 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD06_RS11555 SM00382 ATPases associated with a variety of cellular activities AMD06_RS11595 SM00382 ATPases associated with a variety of cellular activities AMD06_RS11605 SM01103 AMD06_RS11605 AMD06_RS11615 SM00257 Lysin motif AMD06_RS11635 SM00463 Small MutS-related domain AMD06_RS11660 SM01192 AMD06_RS11660 AMD06_RS11660 SM01193 AMD06_RS11660 AMD06_RS11685 SM00387 Histidine kinase-like ATPases AMD06_RS11685 SM00433 TopoisomeraseII AMD06_RS11710 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD06_RS11710 SM01091 Transporter associated domain AMD06_RS11735 SM00382 ATPases associated with a variety of cellular activities AMD06_RS11745 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD06_RS11900 SM00091 PAS domain AMD06_RS11900 SM00387 Histidine kinase-like ATPases AMD06_RS11900 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS11900 SM00448 cheY-homologous receiver domain AMD06_RS11905 SM00382 ATPases associated with a variety of cellular activities AMD06_RS11910 SM00448 cheY-homologous receiver domain AMD06_RS11915 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS11915 SM00091 PAS domain AMD06_RS11915 SM00387 Histidine kinase-like ATPases AMD06_RS11915 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS11915 SM00448 cheY-homologous receiver domain AMD06_RS11930 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD06_RS11940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS11940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS11970 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS12035 SM00966 SpoVT / AbrB like domain AMD06_RS12080 SM00736 Dystroglycan-type cadherin-like domains. AMD06_RS12095 SM00382 ATPases associated with a variety of cellular activities AMD06_RS12270 SM00220 Serine/Threonine protein kinases, catalytic domain AMD06_RS12300 SM00260 Two component signalling adaptor domain AMD06_RS12310 SM00448 cheY-homologous receiver domain AMD06_RS12315 SM00073 Histidine Phosphotransfer domain AMD06_RS12315 SM00260 Two component signalling adaptor domain AMD06_RS12315 SM00387 Histidine kinase-like ATPases AMD06_RS12315 SM01231 AMD06_RS12315 AMD06_RS12320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12330 SM01049 AMD06_RS12330 AMD06_RS12335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12400 SM00260 Two component signalling adaptor domain AMD06_RS12410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS12410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS12415 SM00138 Methyltransferase, chemotaxis proteins AMD06_RS12425 SM00448 cheY-homologous receiver domain AMD06_RS12430 SM00052 Putative diguanylate phosphodiesterase AMD06_RS12430 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS12430 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS12430 SM00091 PAS domain AMD06_RS12430 SM00267 diguanylate cyclase AMD06_RS12450 SM00966 SpoVT / AbrB like domain AMD06_RS12475 SM00073 Histidine Phosphotransfer domain AMD06_RS12475 SM00387 Histidine kinase-like ATPases AMD06_RS12475 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS12475 SM00448 cheY-homologous receiver domain AMD06_RS12480 SM00448 cheY-homologous receiver domain AMD06_RS12480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD06_RS12490 SM00937 AMD06_RS12490 AMD06_RS12495 SM00850 LytTr DNA-binding domain AMD06_RS12555 SM00851 MGS-like domain AMD06_RS12555 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD06_RS12565 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMD06_RS12600 SM00899 AMD06_RS12600 AMD06_RS12620 SM00822 AMD06_RS12620 AMD06_RS12625 SM00841 Elongation factor P, C-terminal AMD06_RS12625 SM01185 AMD06_RS12625 AMD06_RS12670 SM01007 Class II Aldolase and Adducin N-terminal domain AMD06_RS12745 SM00100 Cyclic nucleotide-monophosphate binding domain AMD06_RS12745 SM00419 helix_turn_helix, cAMP Regulatory protein AMD06_RS12790 SM00912 haemagglutination activity domain AMD06_RS12865 SM00014 Acid phosphatase homologues AMD06_RS12875 SM00387 Histidine kinase-like ATPases AMD06_RS12880 SM00448 cheY-homologous receiver domain AMD06_RS12890 SM00052 Putative diguanylate phosphodiesterase AMD06_RS12890 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS12890 SM00267 diguanylate cyclase AMD06_RS12960 SM00646 AMD06_RS12960 AMD06_RS12965 SM00642 Alpha-amylase domain AMD06_RS13010 SM00382 ATPases associated with a variety of cellular activities AMD06_RS13070 SM00487 DEAD-like helicases superfamily AMD06_RS13070 SM00490 helicase superfamily c-terminal domain AMD06_RS13175 SM00830 Chorismate mutase type II AMD06_RS13195 SM00240 Forkhead associated domain AMD06_RS13220 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD06_RS13220 SM00866 AMD06_RS13220 AMD06_RS13260 SM00434 DNA Topoisomerase IV AMD06_RS13280 SM00292 breast cancer carboxy-terminal domain AMD06_RS13280 SM00532 Ligase N family AMD06_RS13295 SM00771 ZipA, C-terminal domain (FtsZ-binding) AMD06_RS13300 SM00968 SMC proteins Flexible Hinge Domain AMD06_RS13360 SM00421 helix_turn_helix, Lux Regulon AMD06_RS13360 SM00448 cheY-homologous receiver domain AMD06_RS13405 SM00947 Carbonic anhydrase AMD06_RS13430 SM00479 AMD06_RS13430 AMD06_RS13460 SM00981 AMD06_RS13460 AMD06_RS13465 SM00382 ATPases associated with a variety of cellular activities AMD06_RS13485 SM00644 AMD06_RS13485 AMD06_RS13495 SM00450 Rhodanese Homology Domain AMD06_RS13520 SM00478 endonuclease III AMD06_RS13530 SM00947 Carbonic anhydrase AMD06_RS13565 SM00382 ATPases associated with a variety of cellular activities AMD06_RS13580 SM00479 AMD06_RS13580 AMD06_RS13585 SM00267 diguanylate cyclase AMD06_RS13590 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD06_RS13600 SM00316 Ribosomal protein S1-like RNA-binding domain AMD06_RS13600 SM00357 Cold shock protein domain AMD06_RS13600 SM00955 AMD06_RS13600 AMD06_RS13620 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMD06_RS13630 SM01018 B12 binding domain AMD06_RS13650 SM00354 helix_turn _helix lactose operon repressor AMD06_RS13670 SM00984 UDP binding domain AMD06_RS13685 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD06_RS13690 SM00382 ATPases associated with a variety of cellular activities AMD06_RS13720 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD06_RS13720 SM01091 Transporter associated domain AMD06_RS13740 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD06_RS13750 SM00861 Transketolase, pyrimidine binding domain AMD06_RS13775 SM00382 ATPases associated with a variety of cellular activities AMD06_RS13815 SM00271 DnaJ molecular chaperone homology domain AMD06_RS13910 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS13940 SM00528 Domain in histone-like proteins of HNS family AMD06_RS13955 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS13970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS13970 SM00267 diguanylate cyclase AMD06_RS13980 SM00267 diguanylate cyclase AMD06_RS14095 SM00357 Cold shock protein domain AMD06_RS14110 SM00947 Carbonic anhydrase AMD06_RS14125 SM00382 ATPases associated with a variety of cellular activities AMD06_RS14145 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD06_RS14175 SM00631 AMD06_RS14175 AMD06_RS14180 SM01217 AMD06_RS14180 AMD06_RS14205 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD06_RS14210 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS14215 SM00434 DNA Topoisomerase IV AMD06_RS14245 SM00710 Parallel beta-helix repeats AMD06_RS14245 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AMD06_RS14250 SM01172 AMD06_RS14250 AMD06_RS14270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD06_RS14280 SM00972 Spore Coat Protein U domain AMD06_RS14295 SM00972 Spore Coat Protein U domain AMD06_RS14320 SM00267 diguanylate cyclase AMD06_RS14350 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD06_RS14390 SM00481 DNA polymerase alpha chain like domain AMD06_RS14475 SM00382 ATPases associated with a variety of cellular activities AMD06_RS14675 SM00671 Sel1-like repeats. AMD06_RS14675 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD06_RS14680 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD06_RS14685 SM00869 Autotransporter beta-domain AMD06_RS14705 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS14705 SM00267 diguanylate cyclase AMD06_RS14735 SM00487 DEAD-like helicases superfamily AMD06_RS14735 SM00490 helicase superfamily c-terminal domain AMD06_RS14750 SM00357 Cold shock protein domain AMD06_RS14785 SM01118 AMD06_RS14785 AMD06_RS14795 SM00448 cheY-homologous receiver domain AMD06_RS14810 SM00358 Double-stranded RNA binding motif AMD06_RS14810 SM00535 Ribonuclease III family AMD06_RS14825 SM00838 Elongation factor G C-terminus AMD06_RS14830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD06_RS14880 SM00530 Helix-turn-helix XRE-family like proteins AMD06_RS14905 SM00812 Alpha-L-fucosidase AMD06_RS14925 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMD06_RS14925 SM00534 ATPase domain of DNA mismatch repair MUTS family AMD06_RS14995 SM00382 ATPases associated with a variety of cellular activities AMD06_RS14995 SM00962 SRP54-type protein, GTPase domain AMD06_RS14995 SM00963 SRP54-type protein, helical bundle domain AMD06_RS15015 SM00813 Alpha-L-arabinofuranosidase C-terminus AMD06_RS15025 SM00448 cheY-homologous receiver domain AMD06_RS15030 SM00091 PAS domain AMD06_RS15030 SM00387 Histidine kinase-like ATPases AMD06_RS15030 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS15035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS15035 SM00387 Histidine kinase-like ATPases AMD06_RS15035 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS15035 SM00448 cheY-homologous receiver domain AMD06_RS15040 SM00138 Methyltransferase, chemotaxis proteins AMD06_RS15050 SM00387 Histidine kinase-like ATPases AMD06_RS15050 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS15050 SM00448 cheY-homologous receiver domain AMD06_RS15075 SM00387 Histidine kinase-like ATPases AMD06_RS15075 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS15075 SM00448 cheY-homologous receiver domain AMD06_RS15080 SM00387 Histidine kinase-like ATPases AMD06_RS15080 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS15115 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS15120 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS15130 SM00382 ATPases associated with a variety of cellular activities AMD06_RS15135 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD06_RS15180 SM00904 Riboflavin kinase AMD06_RS15265 SM00244 prohibitin homologues AMD06_RS15285 SM00478 endonuclease III AMD06_RS15300 SM00421 helix_turn_helix, Lux Regulon AMD06_RS15300 SM00448 cheY-homologous receiver domain AMD06_RS15340 SM00387 Histidine kinase-like ATPases AMD06_RS15340 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS15345 SM00448 cheY-homologous receiver domain AMD06_RS15345 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS15395 SM01060 AMD06_RS15395 AMD06_RS15425 SM00073 Histidine Phosphotransfer domain AMD06_RS15425 SM00260 Two component signalling adaptor domain AMD06_RS15425 SM00387 Histidine kinase-like ATPases AMD06_RS15425 SM01231 AMD06_RS15425 AMD06_RS15430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS15430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS15435 SM00260 Two component signalling adaptor domain AMD06_RS15440 SM00052 Putative diguanylate phosphodiesterase AMD06_RS15440 SM00448 cheY-homologous receiver domain AMD06_RS15445 SM00138 Methyltransferase, chemotaxis proteins AMD06_RS15450 SM00448 cheY-homologous receiver domain AMD06_RS15455 SM00155 Phospholipase D. Active site motifs. AMD06_RS15470 SM00855 Phosphoglycerate mutase family AMD06_RS15520 SM00248 ankyrin repeats AMD06_RS15560 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD06_RS15565 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD06_RS15575 SM00829 Enoylreductase AMD06_RS15580 SM00267 diguanylate cyclase AMD06_RS15645 SM00732 Likely ribonuclease with RNase H fold. AMD06_RS15680 SM00382 ATPases associated with a variety of cellular activities AMD06_RS15695 SM00411 bacterial (prokaryotic) histone like domain AMD06_RS15725 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AMD06_RS15740 SM00382 ATPases associated with a variety of cellular activities AMD06_RS15770 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD06_RS15775 SM00671 Sel1-like repeats. AMD06_RS15805 SM00054 EF-hand, calcium binding motif AMD06_RS15895 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD06_RS15915 SM00382 ATPases associated with a variety of cellular activities AMD06_RS15960 SM00924 MgtE intracellular N domain AMD06_RS15990 SM00656 AMD06_RS15990 AMD06_RS16010 SM00421 helix_turn_helix, Lux Regulon AMD06_RS16035 SM00849 Metallo-beta-lactamase superfamily AMD06_RS16045 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD06_RS16065 SM00422 helix_turn_helix, mercury resistance AMD06_RS16205 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS16215 SM00387 Histidine kinase-like ATPases AMD06_RS16215 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS16215 SM00448 cheY-homologous receiver domain AMD06_RS16220 SM00387 Histidine kinase-like ATPases AMD06_RS16220 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS16220 SM00448 cheY-homologous receiver domain AMD06_RS16230 SM00387 Histidine kinase-like ATPases AMD06_RS16230 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS16230 SM00448 cheY-homologous receiver domain AMD06_RS16235 SM00867 YceI-like domain AMD06_RS16245 SM00867 YceI-like domain AMD06_RS16300 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD06_RS16430 SM00812 Alpha-L-fucosidase AMD06_RS16435 SM00636 AMD06_RS16435 AMD06_RS16450 SM00758 AMD06_RS16450 AMD06_RS16450 SM01217 AMD06_RS16450 AMD06_RS16480 SM01149 AMD06_RS16480 AMD06_RS16540 SM00260 Two component signalling adaptor domain AMD06_RS16550 SM00073 Histidine Phosphotransfer domain AMD06_RS16550 SM00260 Two component signalling adaptor domain AMD06_RS16550 SM00387 Histidine kinase-like ATPases AMD06_RS16550 SM00448 cheY-homologous receiver domain AMD06_RS16550 SM01231 AMD06_RS16550 AMD06_RS16555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS16560 SM00260 Two component signalling adaptor domain AMD06_RS16565 SM00448 cheY-homologous receiver domain AMD06_RS16570 SM00448 cheY-homologous receiver domain AMD06_RS16595 SM00491 AMD06_RS16595 AMD06_RS16620 SM00954 Region found in RelA / SpoT proteins AMD06_RS16665 SM00382 ATPases associated with a variety of cellular activities AMD06_RS16665 SM00487 DEAD-like helicases superfamily AMD06_RS16665 SM00490 helicase superfamily c-terminal domain AMD06_RS16665 SM00847 Helicase associated domain (HA2) Add an annotation AMD06_RS16675 SM00341 Helicase and RNase D C-terminal AMD06_RS16675 SM00487 DEAD-like helicases superfamily AMD06_RS16675 SM00490 helicase superfamily c-terminal domain AMD06_RS16675 SM00956 AMD06_RS16675 AMD06_RS16685 SM00448 cheY-homologous receiver domain AMD06_RS16710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS16710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS16725 SM00448 cheY-homologous receiver domain AMD06_RS16730 SM00091 PAS domain AMD06_RS16730 SM00911 HWE histidine kinase AMD06_RS16785 SM00382 ATPases associated with a variety of cellular activities AMD06_RS16800 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD06_RS16835 SM00834 Putative regulatory protein AMD06_RS16875 SM00382 ATPases associated with a variety of cellular activities AMD06_RS16980 SM00855 Phosphoglycerate mutase family AMD06_RS17030 SM00382 ATPases associated with a variety of cellular activities AMD06_RS17030 SM01086 C-terminal, D2-small domain, of ClpB protein AMD06_RS17035 SM00382 ATPases associated with a variety of cellular activities AMD06_RS17045 SM00062 Bacterial periplasmic substrate-binding proteins AMD06_RS17120 SM00564 beta-propeller repeat AMD06_RS17125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS17235 SM00382 ATPases associated with a variety of cellular activities AMD06_RS17290 SM01329 AMD06_RS17290 AMD06_RS17310 SM00448 cheY-homologous receiver domain AMD06_RS17310 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS17315 SM00387 Histidine kinase-like ATPases AMD06_RS17315 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS17335 SM00014 Acid phosphatase homologues AMD06_RS17385 SM00855 Phosphoglycerate mutase family AMD06_RS17410 SM00829 Enoylreductase AMD06_RS17420 SM00382 ATPases associated with a variety of cellular activities AMD06_RS17470 SM00829 Enoylreductase AMD06_RS17500 SM00838 Elongation factor G C-terminus AMD06_RS17545 SM00662 RNA polymerases D AMD06_RS17550 SM00363 S4 RNA-binding domain AMD06_RS17550 SM01390 AMD06_RS17550 AMD06_RS17610 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD06_RS17615 SM01374 AMD06_RS17615 AMD06_RS17635 SM00322 K homology RNA-binding domain AMD06_RS17650 SM01382 AMD06_RS17650 AMD06_RS17650 SM01383 AMD06_RS17650 AMD06_RS17670 SM01403 AMD06_RS17670 AMD06_RS17680 SM00838 Elongation factor G C-terminus AMD06_RS17680 SM00889 Elongation factor G, domain IV AMD06_RS17695 SM00663 RNA polymerase I subunit A N-terminus AMD06_RS17720 SM00649 Ribosomal protein L11/L12 AMD06_RS17725 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMD06_RS17725 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD06_RS17775 SM01400 AMD06_RS17775 AMD06_RS17795 SM00028 Tetratricopeptide repeats AMD06_RS17805 SM00937 AMD06_RS17805 AMD06_RS17810 SM00028 Tetratricopeptide repeats AMD06_RS17815 SM00852 Probable molybdopterin binding domain AMD06_RS17925 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMD06_RS17925 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMD06_RS17955 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD06_RS17955 SM00475 5'-3' exonuclease AMD06_RS18020 SM00421 helix_turn_helix, Lux Regulon AMD06_RS18025 SM00387 Histidine kinase-like ATPases AMD06_RS18025 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS18025 SM00448 cheY-homologous receiver domain AMD06_RS18030 SM00448 cheY-homologous receiver domain AMD06_RS18105 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD06_RS18140 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD06_RS18140 SM00895 AMD06_RS18140 AMD06_RS18205 SM00650 Ribosomal RNA adenine dimethylases AMD06_RS18220 SM00382 ATPases associated with a variety of cellular activities AMD06_RS18280 SM00382 ATPases associated with a variety of cellular activities AMD06_RS18290 SM00382 ATPases associated with a variety of cellular activities AMD06_RS18340 SM00387 Histidine kinase-like ATPases AMD06_RS18340 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS18345 SM00448 cheY-homologous receiver domain AMD06_RS18345 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS18355 SM00382 ATPases associated with a variety of cellular activities AMD06_RS18375 SM00382 ATPases associated with a variety of cellular activities AMD06_RS18490 SM00996 S-adenosyl-L-homocysteine hydrolase AMD06_RS18490 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD06_RS18525 SM00642 Alpha-amylase domain AMD06_RS18540 SM00944 Pro-kumamolisin, activation domain AMD06_RS18545 SM00829 Enoylreductase AMD06_RS18570 SM00957 SecA DEAD-like domain AMD06_RS18570 SM00958 SecA preprotein cross-linking domain AMD06_RS18590 SM00864 Tubulin/FtsZ family, GTPase domain AMD06_RS18590 SM00865 Tubulin/FtsZ family, C-terminal domain AMD06_RS18595 SM00842 Cell division protein FtsA AMD06_RS18710 SM00448 cheY-homologous receiver domain AMD06_RS18710 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS18715 SM00387 Histidine kinase-like ATPases AMD06_RS18715 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS18745 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD06_RS18805 SM00382 ATPases associated with a variety of cellular activities AMD06_RS18825 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD06_RS18845 SM00829 Enoylreductase AMD06_RS18865 SM00448 cheY-homologous receiver domain AMD06_RS18865 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS18870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS18870 SM00387 Histidine kinase-like ATPases AMD06_RS18870 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS18880 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS18885 SM00849 Metallo-beta-lactamase superfamily AMD06_RS18950 SM00354 helix_turn _helix lactose operon repressor AMD06_RS18960 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD06_RS18960 SM00866 AMD06_RS18960 AMD06_RS19030 SM00382 ATPases associated with a variety of cellular activities AMD06_RS19055 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD06_RS19085 SM00387 Histidine kinase-like ATPases AMD06_RS19085 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS19085 SM00448 cheY-homologous receiver domain AMD06_RS19090 SM00448 cheY-homologous receiver domain AMD06_RS19095 SM00387 Histidine kinase-like ATPases AMD06_RS19095 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS19100 SM00749 bacterial OsmY and nodulation domain AMD06_RS19110 SM01350 AMD06_RS19110 AMD06_RS19165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD06_RS19165 SM00245 tail specific protease AMD06_RS19170 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD06_RS19190 SM00936 Penicillin-binding protein 5, C-terminal domain AMD06_RS19210 SM00710 Parallel beta-helix repeats AMD06_RS19235 SM00268 Actin AMD06_RS19245 SM00382 ATPases associated with a variety of cellular activities AMD06_RS19255 SM00829 Enoylreductase AMD06_RS19270 SM00062 Bacterial periplasmic substrate-binding proteins AMD06_RS19270 SM00248 ankyrin repeats AMD06_RS19275 SM00564 beta-propeller repeat AMD06_RS19295 SM01263 AMD06_RS19295 AMD06_RS19300 SM00267 diguanylate cyclase AMD06_RS19330 SM00382 ATPases associated with a variety of cellular activities AMD06_RS19330 SM01086 C-terminal, D2-small domain, of ClpB protein AMD06_RS19410 SM00448 cheY-homologous receiver domain AMD06_RS19410 SM00850 LytTr DNA-binding domain AMD06_RS19440 SM00267 diguanylate cyclase AMD06_RS19455 SM00637 AMD06_RS19455 AMD06_RS19460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS19460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS19460 SM01049 AMD06_RS19460 AMD06_RS19465 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS19465 SM00091 PAS domain AMD06_RS19465 SM00267 diguanylate cyclase AMD06_RS19480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS19495 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD06_RS19495 SM01232 AMD06_RS19495 AMD06_RS19535 SM00382 ATPases associated with a variety of cellular activities AMD06_RS19545 SM00062 Bacterial periplasmic substrate-binding proteins AMD06_RS19670 SM00387 Histidine kinase-like ATPases AMD06_RS19670 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS19680 SM00382 ATPases associated with a variety of cellular activities AMD06_RS19755 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS19755 SM00387 Histidine kinase-like ATPases AMD06_RS19790 SM00506 Appr-1"-p processing enzyme AMD06_RS19830 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD06_RS19855 SM00849 Metallo-beta-lactamase superfamily AMD06_RS19870 SM00382 ATPases associated with a variety of cellular activities AMD06_RS19940 SM00861 Transketolase, pyrimidine binding domain AMD06_RS19955 SM00028 Tetratricopeptide repeats AMD06_RS19955 SM00327 von Willebrand factor (vWF) type A domain AMD06_RS19960 SM00327 von Willebrand factor (vWF) type A domain AMD06_RS19975 SM00382 ATPases associated with a variety of cellular activities AMD06_RS19980 SM00965 Secretin and TonB N terminus short domain AMD06_RS20030 SM00487 DEAD-like helicases superfamily AMD06_RS20030 SM00490 helicase superfamily c-terminal domain AMD06_RS20040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD06_RS20040 SM00954 Region found in RelA / SpoT proteins AMD06_RS20045 SM01409 AMD06_RS20045 AMD06_RS20050 SM00072 Guanylate kinase homologues. AMD06_RS20075 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD06_RS20100 SM01011 Aminopeptidase P, N-terminal domain AMD06_RS20170 SM00028 Tetratricopeptide repeats AMD06_RS20170 SM00382 ATPases associated with a variety of cellular activities AMD06_RS20170 SM00421 helix_turn_helix, Lux Regulon AMD06_RS20240 SM00464 Found in ATP-dependent protease La (LON) AMD06_RS20290 SM00342 helix_turn_helix, arabinose operon control protein AMD06_RS20295 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS20310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS20340 SM00917 LeuA allosteric (dimerisation) domain AMD06_RS20345 SM01329 AMD06_RS20345 AMD06_RS20365 SM00267 diguanylate cyclase AMD06_RS20415 SM00919 Malic enzyme, NAD binding domain AMD06_RS20415 SM01274 AMD06_RS20415 AMD06_RS20430 SM00387 Histidine kinase-like ATPases AMD06_RS20430 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS20430 SM00448 cheY-homologous receiver domain AMD06_RS20465 SM00421 helix_turn_helix, Lux Regulon AMD06_RS20465 SM00448 cheY-homologous receiver domain AMD06_RS20475 SM00387 Histidine kinase-like ATPases AMD06_RS20475 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS20480 SM00448 cheY-homologous receiver domain AMD06_RS20480 SM00862 Transcriptional regulatory protein, C terminal AMD06_RS20495 SM00822 AMD06_RS20495 AMD06_RS20500 SM00354 helix_turn _helix lactose operon repressor AMD06_RS20515 SM00642 Alpha-amylase domain AMD06_RS20525 SM01154 AMD06_RS20525 AMD06_RS20560 SM00450 Rhodanese Homology Domain AMD06_RS20705 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD06_RS20705 SM00866 AMD06_RS20705 AMD06_RS20765 SM00382 ATPases associated with a variety of cellular activities AMD06_RS20795 SM01211 AMD06_RS20795 AMD06_RS20860 SM00656 AMD06_RS20860 AMD06_RS20890 SM00528 Domain in histone-like proteins of HNS family AMD06_RS20905 SM00382 ATPases associated with a variety of cellular activities AMD06_RS20935 SM00882 Coenzyme A transferase AMD06_RS20940 SM00882 Coenzyme A transferase AMD06_RS20955 SM00984 UDP binding domain AMD06_RS20980 SM00893 Electron transfer flavoprotein domain AMD06_RS20985 SM00893 Electron transfer flavoprotein domain AMD06_RS21060 SM00382 ATPases associated with a variety of cellular activities AMD06_RS21075 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD06_RS21110 SM00487 DEAD-like helicases superfamily AMD06_RS21110 SM00490 helicase superfamily c-terminal domain AMD06_RS21145 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS21180 SM00825 Beta-ketoacyl synthase AMD06_RS21250 SM00382 ATPases associated with a variety of cellular activities AMD06_RS21270 SM00382 ATPases associated with a variety of cellular activities AMD06_RS21270 SM00448 cheY-homologous receiver domain AMD06_RS21275 SM00387 Histidine kinase-like ATPases AMD06_RS21290 SM00830 Chorismate mutase type II AMD06_RS21300 SM00382 ATPases associated with a variety of cellular activities AMD06_RS21370 SM00986 Uracil DNA glycosylase superfamily AMD06_RS21370 SM00987 UreE urease accessory protein, C-terminal domain AMD06_RS21410 SM00382 ATPases associated with a variety of cellular activities AMD06_RS21410 SM00930 AMD06_RS21410 AMD06_RS21430 SM00387 Histidine kinase-like ATPases AMD06_RS21430 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS21430 SM00448 cheY-homologous receiver domain AMD06_RS21485 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS21485 SM00091 PAS domain AMD06_RS21485 SM00387 Histidine kinase-like ATPases AMD06_RS21485 SM00388 His Kinase A (phosphoacceptor) domain AMD06_RS21485 SM00448 cheY-homologous receiver domain AMD06_RS21505 SM01005 Alanine racemase, C-terminal domain AMD06_RS21515 SM00344 helix_turn_helix ASNC type AMD06_RS21570 SM00382 ATPases associated with a variety of cellular activities AMD06_RS21580 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AMD06_RS21585 SM00986 Uracil DNA glycosylase superfamily AMD06_RS21585 SM00987 UreE urease accessory protein, C-terminal domain AMD06_RS21590 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD06_RS21655 SM00448 cheY-homologous receiver domain AMD06_RS21655 SM00850 LytTr DNA-binding domain AMD06_RS21660 SM00387 Histidine kinase-like ATPases AMD06_RS21700 SM00091 PAS domain AMD06_RS21700 SM00138 Methyltransferase, chemotaxis proteins AMD06_RS21700 SM00911 HWE histidine kinase AMD06_RS21705 SM00448 cheY-homologous receiver domain AMD06_RS21715 SM00382 ATPases associated with a variety of cellular activities AMD06_RS21715 SM00448 cheY-homologous receiver domain AMD06_RS21770 SM00382 ATPases associated with a variety of cellular activities AMD06_RS21845 SM00382 ATPases associated with a variety of cellular activities AMD06_RS21850 SM00631 AMD06_RS21850 AMD06_RS21875 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD06_RS21875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD06_RS21880 SM00477 DNA/RNA non-specific endonuclease AMD06_RS21880 SM00892 DNA/RNA non-specific endonuclease AMD06_RS21945 SM00382 ATPases associated with a variety of cellular activities AMD06_RS22160 SM00382 ATPases associated with a variety of cellular activities AMD06_RS22305 SM00257 Lysin motif AMD06_RS22330 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD06_RS22330 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD06_RS22330 SM00493 AMD06_RS22330 AMD06_RS22385 SM00487 DEAD-like helicases superfamily AMD06_RS22385 SM00490 helicase superfamily c-terminal domain AMD06_RS22420 SM00986 Uracil DNA glycosylase superfamily AMD06_RS22420 SM00987 UreE urease accessory protein, C-terminal domain AMD06_RS22425 SM00448 cheY-homologous receiver domain AMD06_RS22435 SM00382 ATPases associated with a variety of cellular activities AMD06_RS22440 SM00487 DEAD-like helicases superfamily AMD06_RS22440 SM00490 helicase superfamily c-terminal domain AMD06_RS22450 SM00357 Cold shock protein domain AMD06_RS22450 SM00382 ATPases associated with a variety of cellular activities AMD06_RS22450 SM00959 Rho termination factor, N-terminal domain AMD06_RS22480 SM00487 DEAD-like helicases superfamily AMD06_RS22520 SM00382 ATPases associated with a variety of cellular activities AMD06_RS22530 SM00257 Lysin motif AMD06_RS22560 SM01150 AMD06_RS22560 AMD06_RS22605 SM00644 AMD06_RS22605 AMD06_RS22615 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD06_RS22650 SM01217 AMD06_RS22650 AMD06_RS22655 SM00905 Dihydroneopterin aldolase AMD06_RS22680 SM00400 zinc finger AMD06_RS22680 SM00493 AMD06_RS22680 AMD06_RS22680 SM00766 DNA primase DnaG DnaB-binding AMD06_RS22785 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS22785 SM00091 PAS domain AMD06_RS22840 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD06_RS22875 SM00155 Phospholipase D. Active site motifs. AMD06_RS22960 SM00796 Allophanate hydrolase subunit 1 AMD06_RS22960 SM00797 Allophanate hydrolase subunit 2 AMD06_RS22960 SM00878 Biotin carboxylase C-terminal domain AMD06_RS23020 SM00382 ATPases associated with a variety of cellular activities AMD06_RS23070 SM00829 Enoylreductase AMD06_RS23110 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD06_RS23110 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD06_RS23110 SM00091 PAS domain AMD06_RS23110 SM00267 diguanylate cyclase AMD06_RS23140 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD06_RS23165 SM00014 Acid phosphatase homologues AMD06_RS23175 SM00028 Tetratricopeptide repeats