AMD12_RS00045 SM00433 TopoisomeraseII AMD12_RS00185 SM00028 Tetratricopeptide repeats AMD12_RS00470 SM00382 ATPases associated with a variety of cellular activities AMD12_RS00470 SM00760 Bacterial dnaA protein helix-turn-helix domain AMD12_RS00475 SM00480 DNA polymerase III beta subunit AMD12_RS00485 SM00387 Histidine kinase-like ATPases AMD12_RS00485 SM00433 TopoisomeraseII AMD12_RS00500 SM00028 Tetratricopeptide repeats AMD12_RS00535 SM00155 Phospholipase D. Active site motifs. AMD12_RS00550 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD12_RS00580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD12_RS00580 SM00245 tail specific protease AMD12_RS00620 SM00829 Enoylreductase AMD12_RS00745 SM00382 ATPases associated with a variety of cellular activities AMD12_RS00855 SM00487 DEAD-like helicases superfamily AMD12_RS00855 SM00490 helicase superfamily c-terminal domain AMD12_RS00875 SM00822 AMD12_RS00875 AMD12_RS00880 SM00822 AMD12_RS00880 AMD12_RS01135 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AMD12_RS01155 SM00421 helix_turn_helix, Lux Regulon AMD12_RS01155 SM00448 cheY-homologous receiver domain AMD12_RS01175 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS01255 SM00642 Alpha-amylase domain AMD12_RS01260 SM00642 Alpha-amylase domain AMD12_RS01265 SM00642 Alpha-amylase domain AMD12_RS01315 SM00354 helix_turn _helix lactose operon repressor AMD12_RS01355 SM00344 helix_turn_helix ASNC type AMD12_RS01375 SM00382 ATPases associated with a variety of cellular activities AMD12_RS01390 SM00382 ATPases associated with a variety of cellular activities AMD12_RS01425 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS01455 SM00855 Phosphoglycerate mutase family AMD12_RS01460 SM00867 YceI-like domain AMD12_RS01465 SM00155 Phospholipase D. Active site motifs. AMD12_RS01475 SM00563 Phosphate acyltransferases AMD12_RS01490 SM00028 Tetratricopeptide repeats AMD12_RS01500 SM00829 Enoylreductase AMD12_RS01515 SM01230 AMD12_RS01515 AMD12_RS01520 SM00938 Nitrogen regulatory protein P-II AMD12_RS01530 SM00387 Histidine kinase-like ATPases AMD12_RS01530 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS01535 SM00382 ATPases associated with a variety of cellular activities AMD12_RS01535 SM00448 cheY-homologous receiver domain AMD12_RS01595 SM00450 Rhodanese Homology Domain AMD12_RS01620 SM00387 Histidine kinase-like ATPases AMD12_RS01620 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS01625 SM00382 ATPases associated with a variety of cellular activities AMD12_RS01625 SM00448 cheY-homologous receiver domain AMD12_RS01735 SM00563 Phosphate acyltransferases AMD12_RS01770 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS01795 SM00100 Cyclic nucleotide-monophosphate binding domain AMD12_RS01795 SM00267 diguanylate cyclase AMD12_RS01820 SM00878 Biotin carboxylase C-terminal domain AMD12_RS01845 SM00953 AMD12_RS01845 AMD12_RS01885 SM00833 Cobalamin synthesis protein cobW C-terminal domain AMD12_RS01915 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD12_RS01950 SM00829 Enoylreductase AMD12_RS01980 SM00487 DEAD-like helicases superfamily AMD12_RS01980 SM00490 helicase superfamily c-terminal domain AMD12_RS01980 SM00847 Helicase associated domain (HA2) Add an annotation AMD12_RS02115 SM00422 helix_turn_helix, mercury resistance AMD12_RS02150 SM00448 cheY-homologous receiver domain AMD12_RS02150 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS02155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS02155 SM00387 Histidine kinase-like ATPases AMD12_RS02155 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS02300 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD12_RS02305 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD12_RS02325 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS02355 SM00420 helix_turn_helix, Deoxyribose operon repressor AMD12_RS02355 SM01134 AMD12_RS02355 AMD12_RS02370 SM00882 Coenzyme A transferase AMD12_RS02375 SM00882 Coenzyme A transferase AMD12_RS02395 SM00998 Adenylosuccinate lyase C-terminus AMD12_RS02415 SM00346 helix_turn_helix isocitrate lyase regulation AMD12_RS02420 SM00090 RIO-like kinase AMD12_RS02435 SM01228 AMD12_RS02435 AMD12_RS02490 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD12_RS02490 SM00876 Biotin and Thiamin Synthesis associated domain AMD12_RS02510 SM00369 Leucine-rich repeats, typical (most populated) subfamily AMD12_RS02605 SM00382 ATPases associated with a variety of cellular activities AMD12_RS02665 SM00267 diguanylate cyclase AMD12_RS02675 SM00642 Alpha-amylase domain AMD12_RS02680 SM00642 Alpha-amylase domain AMD12_RS02690 SM00642 Alpha-amylase domain AMD12_RS02700 SM00642 Alpha-amylase domain AMD12_RS02750 SM00822 AMD12_RS02750 AMD12_RS02760 SM00487 DEAD-like helicases superfamily AMD12_RS02760 SM00490 helicase superfamily c-terminal domain AMD12_RS02770 SM00326 Src homology 3 domains AMD12_RS02775 SM00861 Transketolase, pyrimidine binding domain AMD12_RS02785 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AMD12_RS02805 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD12_RS02900 SM00271 DnaJ molecular chaperone homology domain AMD12_RS02920 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMD12_RS02940 SM00903 Flavin reductase like domain AMD12_RS02960 SM00100 Cyclic nucleotide-monophosphate binding domain AMD12_RS02960 SM00419 helix_turn_helix, cAMP Regulatory protein AMD12_RS03015 SM00387 Histidine kinase-like ATPases AMD12_RS03015 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS03015 SM00448 cheY-homologous receiver domain AMD12_RS03020 SM00052 Putative diguanylate phosphodiesterase AMD12_RS03020 SM00267 diguanylate cyclase AMD12_RS03020 SM00448 cheY-homologous receiver domain AMD12_RS03085 SM00563 Phosphate acyltransferases AMD12_RS03110 SM01209 AMD12_RS03110 AMD12_RS03110 SM01210 AMD12_RS03110 AMD12_RS03120 SM00798 AICARFT/IMPCHase bienzyme AMD12_RS03120 SM00851 MGS-like domain AMD12_RS03135 SM00195 Dual specificity phosphatase, catalytic domain AMD12_RS03155 SM00563 Phosphate acyltransferases AMD12_RS03180 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS03205 SM00878 Biotin carboxylase C-terminal domain AMD12_RS03235 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS03245 SM00234 in StAR and phosphatidylcholine transfer protein AMD12_RS03265 SM00883 Chaperonin 10 Kd subunit AMD12_RS03325 SM00944 Pro-kumamolisin, activation domain AMD12_RS03340 SM00867 YceI-like domain AMD12_RS03395 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD12_RS03405 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD12_RS03405 SM00895 AMD12_RS03405 AMD12_RS03425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS03425 SM00331 Sigma factor PP2C-like phosphatases AMD12_RS03465 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS03530 SM00267 diguanylate cyclase AMD12_RS03560 SM00062 Bacterial periplasmic substrate-binding proteins AMD12_RS03600 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD12_RS03600 SM01232 AMD12_RS03600 AMD12_RS03615 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS03625 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS03625 SM00091 PAS domain AMD12_RS03625 SM00267 diguanylate cyclase AMD12_RS03630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS03630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS03630 SM01049 AMD12_RS03630 AMD12_RS03635 SM00637 AMD12_RS03635 AMD12_RS03650 SM00267 diguanylate cyclase AMD12_RS03680 SM00448 cheY-homologous receiver domain AMD12_RS03680 SM00850 LytTr DNA-binding domain AMD12_RS03760 SM00382 ATPases associated with a variety of cellular activities AMD12_RS03760 SM01086 C-terminal, D2-small domain, of ClpB protein AMD12_RS03790 SM00267 diguanylate cyclase AMD12_RS03795 SM01263 AMD12_RS03795 AMD12_RS03815 SM00564 beta-propeller repeat AMD12_RS03820 SM00062 Bacterial periplasmic substrate-binding proteins AMD12_RS03820 SM00248 ankyrin repeats AMD12_RS03835 SM00829 Enoylreductase AMD12_RS03845 SM00382 ATPases associated with a variety of cellular activities AMD12_RS03855 SM00268 Actin AMD12_RS03880 SM00710 Parallel beta-helix repeats AMD12_RS03900 SM00936 Penicillin-binding protein 5, C-terminal domain AMD12_RS03920 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD12_RS03925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD12_RS03925 SM00245 tail specific protease AMD12_RS03980 SM01350 AMD12_RS03980 AMD12_RS03990 SM00749 bacterial OsmY and nodulation domain AMD12_RS03995 SM00387 Histidine kinase-like ATPases AMD12_RS03995 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS04000 SM00448 cheY-homologous receiver domain AMD12_RS04005 SM00387 Histidine kinase-like ATPases AMD12_RS04005 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS04005 SM00448 cheY-homologous receiver domain AMD12_RS04035 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD12_RS04060 SM00382 ATPases associated with a variety of cellular activities AMD12_RS04130 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD12_RS04130 SM00866 AMD12_RS04130 AMD12_RS04140 SM00354 helix_turn _helix lactose operon repressor AMD12_RS04205 SM00849 Metallo-beta-lactamase superfamily AMD12_RS04210 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS04220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS04220 SM00387 Histidine kinase-like ATPases AMD12_RS04220 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS04225 SM00448 cheY-homologous receiver domain AMD12_RS04225 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS04245 SM00829 Enoylreductase AMD12_RS04265 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD12_RS04285 SM00382 ATPases associated with a variety of cellular activities AMD12_RS04345 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD12_RS04375 SM00387 Histidine kinase-like ATPases AMD12_RS04375 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS04380 SM00448 cheY-homologous receiver domain AMD12_RS04380 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS04490 SM00842 Cell division protein FtsA AMD12_RS04495 SM00864 Tubulin/FtsZ family, GTPase domain AMD12_RS04495 SM00865 Tubulin/FtsZ family, C-terminal domain AMD12_RS04515 SM00957 SecA DEAD-like domain AMD12_RS04515 SM00958 SecA preprotein cross-linking domain AMD12_RS04540 SM00829 Enoylreductase AMD12_RS04545 SM00944 Pro-kumamolisin, activation domain AMD12_RS04560 SM00642 Alpha-amylase domain AMD12_RS04595 SM00996 S-adenosyl-L-homocysteine hydrolase AMD12_RS04595 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD12_RS04710 SM00382 ATPases associated with a variety of cellular activities AMD12_RS04730 SM00382 ATPases associated with a variety of cellular activities AMD12_RS04740 SM00448 cheY-homologous receiver domain AMD12_RS04740 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS04745 SM00387 Histidine kinase-like ATPases AMD12_RS04745 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS04795 SM00382 ATPases associated with a variety of cellular activities AMD12_RS04805 SM00382 ATPases associated with a variety of cellular activities AMD12_RS04865 SM00382 ATPases associated with a variety of cellular activities AMD12_RS04880 SM00650 Ribosomal RNA adenine dimethylases AMD12_RS04945 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD12_RS04945 SM00895 AMD12_RS04945 AMD12_RS04980 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD12_RS05055 SM00448 cheY-homologous receiver domain AMD12_RS05060 SM00387 Histidine kinase-like ATPases AMD12_RS05060 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS05060 SM00448 cheY-homologous receiver domain AMD12_RS05065 SM00421 helix_turn_helix, Lux Regulon AMD12_RS05130 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD12_RS05130 SM00475 5'-3' exonuclease AMD12_RS05160 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMD12_RS05160 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMD12_RS05275 SM00852 Probable molybdopterin binding domain AMD12_RS05280 SM00028 Tetratricopeptide repeats AMD12_RS05285 SM00937 AMD12_RS05285 AMD12_RS05295 SM00028 Tetratricopeptide repeats AMD12_RS05315 SM01400 AMD12_RS05315 AMD12_RS05365 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMD12_RS05365 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD12_RS05370 SM00649 Ribosomal protein L11/L12 AMD12_RS05395 SM00663 RNA polymerase I subunit A N-terminus AMD12_RS05410 SM00838 Elongation factor G C-terminus AMD12_RS05410 SM00889 Elongation factor G, domain IV AMD12_RS05420 SM01403 AMD12_RS05420 AMD12_RS05440 SM01382 AMD12_RS05440 AMD12_RS05440 SM01383 AMD12_RS05440 AMD12_RS05455 SM00322 K homology RNA-binding domain AMD12_RS05475 SM01374 AMD12_RS05475 AMD12_RS05480 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD12_RS05540 SM00363 S4 RNA-binding domain AMD12_RS05540 SM01390 AMD12_RS05540 AMD12_RS05545 SM00662 RNA polymerases D AMD12_RS05590 SM00838 Elongation factor G C-terminus AMD12_RS05620 SM00829 Enoylreductase AMD12_RS05665 SM00382 ATPases associated with a variety of cellular activities AMD12_RS05675 SM00829 Enoylreductase AMD12_RS05705 SM00855 Phosphoglycerate mutase family AMD12_RS05755 SM00014 Acid phosphatase homologues AMD12_RS05775 SM00091 PAS domain AMD12_RS05775 SM00387 Histidine kinase-like ATPases AMD12_RS05775 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS05780 SM00448 cheY-homologous receiver domain AMD12_RS05780 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS05800 SM01329 AMD12_RS05800 AMD12_RS05945 SM00387 Histidine kinase-like ATPases AMD12_RS05965 SM00382 ATPases associated with a variety of cellular activities AMD12_RS05965 SM00994 ClpX C4-type zinc finger AMD12_RS05965 SM01086 C-terminal, D2-small domain, of ClpB protein AMD12_RS05970 SM00382 ATPases associated with a variety of cellular activities AMD12_RS05970 SM00464 Found in ATP-dependent protease La (LON) AMD12_RS05975 SM00411 bacterial (prokaryotic) histone like domain AMD12_RS06000 SM00257 Lysin motif AMD12_RS06005 SM00849 Metallo-beta-lactamase superfamily AMD12_RS06020 SM00479 AMD12_RS06020 AMD12_RS06025 SM00331 Sigma factor PP2C-like phosphatases AMD12_RS06025 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD12_RS06050 SM00849 Metallo-beta-lactamase superfamily AMD12_RS06055 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD12_RS06125 SM00382 ATPases associated with a variety of cellular activities AMD12_RS06135 SM00493 AMD12_RS06135 AMD12_RS06150 SM00460 Transglutaminase/protease-like homologues AMD12_RS06160 SM00382 ATPases associated with a variety of cellular activities AMD12_RS06205 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD12_RS06210 SM00822 AMD12_RS06210 AMD12_RS06220 SM00825 Beta-ketoacyl synthase AMD12_RS06255 SM00382 ATPases associated with a variety of cellular activities AMD12_RS06295 SM01359 AMD12_RS06295 AMD12_RS06295 SM01360 AMD12_RS06295 AMD12_RS06330 SM00271 DnaJ molecular chaperone homology domain AMD12_RS06335 SM00448 cheY-homologous receiver domain AMD12_RS06340 SM00244 prohibitin homologues AMD12_RS06345 SM00244 prohibitin homologues AMD12_RS06350 SM01321 AMD12_RS06350 AMD12_RS06355 SM00788 Adenylosuccinate synthetase AMD12_RS06370 SM00822 AMD12_RS06370 AMD12_RS06425 SM00220 Serine/Threonine protein kinases, catalytic domain AMD12_RS06440 SM00855 Phosphoglycerate mutase family AMD12_RS06495 SM00052 Putative diguanylate phosphodiesterase AMD12_RS06500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD12_RS06510 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD12_RS06515 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD12_RS06530 SM00974 AMD12_RS06530 AMD12_RS06550 SM00966 SpoVT / AbrB like domain AMD12_RS06570 SM00481 DNA polymerase alpha chain like domain AMD12_RS06580 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD12_RS06615 SM00091 PAS domain AMD12_RS06615 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS06630 SM01060 AMD12_RS06630 AMD12_RS06680 SM00448 cheY-homologous receiver domain AMD12_RS06680 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS06685 SM00387 Histidine kinase-like ATPases AMD12_RS06685 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS06725 SM00421 helix_turn_helix, Lux Regulon AMD12_RS06725 SM00448 cheY-homologous receiver domain AMD12_RS06740 SM00478 endonuclease III AMD12_RS06760 SM00244 prohibitin homologues AMD12_RS06845 SM00904 Riboflavin kinase AMD12_RS06890 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD12_RS06895 SM00382 ATPases associated with a variety of cellular activities AMD12_RS06905 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS06910 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS06945 SM00387 Histidine kinase-like ATPases AMD12_RS06945 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS06950 SM00387 Histidine kinase-like ATPases AMD12_RS06950 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS06950 SM00448 cheY-homologous receiver domain AMD12_RS06975 SM00387 Histidine kinase-like ATPases AMD12_RS06975 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS06975 SM00448 cheY-homologous receiver domain AMD12_RS06985 SM00138 Methyltransferase, chemotaxis proteins AMD12_RS06990 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS06990 SM00387 Histidine kinase-like ATPases AMD12_RS06990 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS06990 SM00448 cheY-homologous receiver domain AMD12_RS06995 SM00091 PAS domain AMD12_RS06995 SM00387 Histidine kinase-like ATPases AMD12_RS06995 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS07000 SM00448 cheY-homologous receiver domain AMD12_RS07010 SM00813 Alpha-L-arabinofuranosidase C-terminus AMD12_RS07030 SM00382 ATPases associated with a variety of cellular activities AMD12_RS07030 SM00962 SRP54-type protein, GTPase domain AMD12_RS07030 SM00963 SRP54-type protein, helical bundle domain AMD12_RS07100 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMD12_RS07100 SM00534 ATPase domain of DNA mismatch repair MUTS family AMD12_RS07120 SM00812 Alpha-L-fucosidase AMD12_RS07145 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS07195 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD12_RS07200 SM00838 Elongation factor G C-terminus AMD12_RS07215 SM00358 Double-stranded RNA binding motif AMD12_RS07215 SM00535 Ribonuclease III family AMD12_RS07230 SM00448 cheY-homologous receiver domain AMD12_RS07240 SM01118 AMD12_RS07240 AMD12_RS07275 SM00357 Cold shock protein domain AMD12_RS07290 SM00487 DEAD-like helicases superfamily AMD12_RS07290 SM00490 helicase superfamily c-terminal domain AMD12_RS07320 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS07320 SM00267 diguanylate cyclase AMD12_RS07340 SM00869 Autotransporter beta-domain AMD12_RS07345 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD12_RS07350 SM00671 Sel1-like repeats. AMD12_RS07350 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD12_RS07550 SM00382 ATPases associated with a variety of cellular activities AMD12_RS07635 SM00481 DNA polymerase alpha chain like domain AMD12_RS07675 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD12_RS07705 SM00267 diguanylate cyclase AMD12_RS07730 SM00972 Spore Coat Protein U domain AMD12_RS07745 SM00972 Spore Coat Protein U domain AMD12_RS07755 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD12_RS07775 SM01172 AMD12_RS07775 AMD12_RS07780 SM00710 Parallel beta-helix repeats AMD12_RS07780 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AMD12_RS07815 SM00434 DNA Topoisomerase IV AMD12_RS07820 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS07825 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD12_RS07850 SM01217 AMD12_RS07850 AMD12_RS07855 SM00631 AMD12_RS07855 AMD12_RS07885 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD12_RS07905 SM00382 ATPases associated with a variety of cellular activities AMD12_RS07920 SM00947 Carbonic anhydrase AMD12_RS07935 SM00357 Cold shock protein domain AMD12_RS08050 SM00267 diguanylate cyclase AMD12_RS08060 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS08060 SM00267 diguanylate cyclase AMD12_RS08075 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS08090 SM00528 Domain in histone-like proteins of HNS family AMD12_RS08115 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS08210 SM00271 DnaJ molecular chaperone homology domain AMD12_RS08250 SM00382 ATPases associated with a variety of cellular activities AMD12_RS08275 SM00861 Transketolase, pyrimidine binding domain AMD12_RS08285 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD12_RS08305 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD12_RS08305 SM01091 Transporter associated domain AMD12_RS08335 SM00382 ATPases associated with a variety of cellular activities AMD12_RS08340 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD12_RS08355 SM00984 UDP binding domain AMD12_RS08375 SM00354 helix_turn _helix lactose operon repressor AMD12_RS08395 SM01018 B12 binding domain AMD12_RS08405 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMD12_RS08425 SM00316 Ribosomal protein S1-like RNA-binding domain AMD12_RS08425 SM00357 Cold shock protein domain AMD12_RS08425 SM00955 AMD12_RS08425 AMD12_RS08435 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD12_RS08440 SM00267 diguanylate cyclase AMD12_RS08445 SM00479 AMD12_RS08445 AMD12_RS08460 SM00382 ATPases associated with a variety of cellular activities AMD12_RS08495 SM00947 Carbonic anhydrase AMD12_RS08505 SM00478 endonuclease III AMD12_RS08530 SM00450 Rhodanese Homology Domain AMD12_RS08540 SM00644 AMD12_RS08540 AMD12_RS08560 SM00382 ATPases associated with a variety of cellular activities AMD12_RS08565 SM00981 AMD12_RS08565 AMD12_RS08595 SM00479 AMD12_RS08595 AMD12_RS08620 SM00947 Carbonic anhydrase AMD12_RS08665 SM00421 helix_turn_helix, Lux Regulon AMD12_RS08665 SM00448 cheY-homologous receiver domain AMD12_RS08725 SM00968 SMC proteins Flexible Hinge Domain AMD12_RS08730 SM00771 ZipA, C-terminal domain (FtsZ-binding) AMD12_RS08745 SM00292 breast cancer carboxy-terminal domain AMD12_RS08745 SM00532 Ligase N family AMD12_RS08765 SM00434 DNA Topoisomerase IV AMD12_RS08810 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD12_RS08810 SM00866 AMD12_RS08810 AMD12_RS08835 SM00240 Forkhead associated domain AMD12_RS08855 SM00830 Chorismate mutase type II AMD12_RS08940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS08940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS08950 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD12_RS08965 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS08965 SM00091 PAS domain AMD12_RS08965 SM00387 Histidine kinase-like ATPases AMD12_RS08965 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS08965 SM00448 cheY-homologous receiver domain AMD12_RS08970 SM00448 cheY-homologous receiver domain AMD12_RS08975 SM00382 ATPases associated with a variety of cellular activities AMD12_RS08980 SM00091 PAS domain AMD12_RS08980 SM00387 Histidine kinase-like ATPases AMD12_RS08980 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS08980 SM00448 cheY-homologous receiver domain AMD12_RS09135 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD12_RS09145 SM00382 ATPases associated with a variety of cellular activities AMD12_RS09170 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD12_RS09170 SM01091 Transporter associated domain AMD12_RS09195 SM00387 Histidine kinase-like ATPases AMD12_RS09195 SM00433 TopoisomeraseII AMD12_RS09220 SM01192 AMD12_RS09220 AMD12_RS09220 SM01193 AMD12_RS09220 AMD12_RS09245 SM00463 Small MutS-related domain AMD12_RS09265 SM00257 Lysin motif AMD12_RS09275 SM01103 AMD12_RS09275 AMD12_RS09285 SM00382 ATPases associated with a variety of cellular activities AMD12_RS09325 SM00382 ATPases associated with a variety of cellular activities AMD12_RS09335 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD12_RS09350 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS09350 SM00091 PAS domain AMD12_RS09350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS09405 SM00670 Large family of predicted nucleotide-binding domains AMD12_RS09425 SM01130 AMD12_RS09425 AMD12_RS09450 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD12_RS09495 SM00758 AMD12_RS09495 AMD12_RS09525 SM00646 AMD12_RS09525 AMD12_RS09595 SM00052 Putative diguanylate phosphodiesterase AMD12_RS09595 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS09595 SM00267 diguanylate cyclase AMD12_RS09605 SM00448 cheY-homologous receiver domain AMD12_RS09610 SM00387 Histidine kinase-like ATPases AMD12_RS09620 SM00014 Acid phosphatase homologues AMD12_RS09695 SM00912 haemagglutination activity domain AMD12_RS09740 SM00100 Cyclic nucleotide-monophosphate binding domain AMD12_RS09740 SM00419 helix_turn_helix, cAMP Regulatory protein AMD12_RS09815 SM01007 Class II Aldolase and Adducin N-terminal domain AMD12_RS09860 SM00841 Elongation factor P, C-terminal AMD12_RS09860 SM01185 AMD12_RS09860 AMD12_RS09865 SM00822 AMD12_RS09865 AMD12_RS09885 SM00899 AMD12_RS09885 AMD12_RS09920 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMD12_RS09930 SM00851 MGS-like domain AMD12_RS09930 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD12_RS09990 SM00850 LytTr DNA-binding domain AMD12_RS09995 SM00937 AMD12_RS09995 AMD12_RS10005 SM00448 cheY-homologous receiver domain AMD12_RS10005 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD12_RS10010 SM00073 Histidine Phosphotransfer domain AMD12_RS10010 SM00387 Histidine kinase-like ATPases AMD12_RS10010 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS10010 SM00448 cheY-homologous receiver domain AMD12_RS10035 SM00966 SpoVT / AbrB like domain AMD12_RS10055 SM00052 Putative diguanylate phosphodiesterase AMD12_RS10055 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS10055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS10055 SM00091 PAS domain AMD12_RS10055 SM00267 diguanylate cyclase AMD12_RS10060 SM00448 cheY-homologous receiver domain AMD12_RS10070 SM00138 Methyltransferase, chemotaxis proteins AMD12_RS10075 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS10080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS10085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS10095 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS10100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS10105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS10110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS10130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS10130 SM01049 AMD12_RS10130 AMD12_RS10140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS10145 SM00073 Histidine Phosphotransfer domain AMD12_RS10145 SM00260 Two component signalling adaptor domain AMD12_RS10145 SM00387 Histidine kinase-like ATPases AMD12_RS10145 SM01231 AMD12_RS10145 AMD12_RS10150 SM00448 cheY-homologous receiver domain AMD12_RS10160 SM00260 Two component signalling adaptor domain AMD12_RS10190 SM00220 Serine/Threonine protein kinases, catalytic domain AMD12_RS10250 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS10275 SM00073 Histidine Phosphotransfer domain AMD12_RS10275 SM00260 Two component signalling adaptor domain AMD12_RS10275 SM00387 Histidine kinase-like ATPases AMD12_RS10275 SM01231 AMD12_RS10275 AMD12_RS10285 SM00448 cheY-homologous receiver domain AMD12_RS10300 SM00382 ATPases associated with a variety of cellular activities AMD12_RS10300 SM00962 SRP54-type protein, GTPase domain AMD12_RS10315 SM00052 Putative diguanylate phosphodiesterase AMD12_RS10315 SM00267 diguanylate cyclase AMD12_RS10320 SM00267 diguanylate cyclase AMD12_RS10330 SM00267 diguanylate cyclase AMD12_RS10380 SM00382 ATPases associated with a variety of cellular activities AMD12_RS10430 SM00822 AMD12_RS10430 AMD12_RS10455 SM00382 ATPases associated with a variety of cellular activities AMD12_RS10460 SM00448 cheY-homologous receiver domain AMD12_RS10470 SM00421 helix_turn_helix, Lux Regulon AMD12_RS10470 SM00448 cheY-homologous receiver domain AMD12_RS10510 SM00047 Lysozyme subfamily 2 AMD12_RS10555 SM00260 Two component signalling adaptor domain AMD12_RS10555 SM00448 cheY-homologous receiver domain AMD12_RS10560 SM00858 AMD12_RS10560 AMD12_RS10575 SM00387 Histidine kinase-like ATPases AMD12_RS10580 SM00052 Putative diguanylate phosphodiesterase AMD12_RS10580 SM00267 diguanylate cyclase AMD12_RS10580 SM00448 cheY-homologous receiver domain AMD12_RS10585 SM00091 PAS domain AMD12_RS10585 SM00387 Histidine kinase-like ATPases AMD12_RS10590 SM00052 Putative diguanylate phosphodiesterase AMD12_RS10590 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS10590 SM00091 PAS domain AMD12_RS10590 SM00267 diguanylate cyclase AMD12_RS10600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS10625 SM00382 ATPases associated with a variety of cellular activities AMD12_RS10625 SM01086 C-terminal, D2-small domain, of ClpB protein AMD12_RS10630 SM00316 Ribosomal protein S1-like RNA-binding domain AMD12_RS10650 SM00382 ATPases associated with a variety of cellular activities AMD12_RS10650 SM00843 AMD12_RS10650 AMD12_RS10670 SM00382 ATPases associated with a variety of cellular activities AMD12_RS10700 SM00562 AMD12_RS10700 AMD12_RS10710 SM00028 Tetratricopeptide repeats AMD12_RS10725 SM00564 beta-propeller repeat AMD12_RS10730 SM00382 ATPases associated with a variety of cellular activities AMD12_RS10735 SM00852 Probable molybdopterin binding domain AMD12_RS10740 SM00450 Rhodanese Homology Domain AMD12_RS10785 SM00852 Probable molybdopterin binding domain AMD12_RS10810 SM00529 Helix-turn-helix diphteria tox regulatory element AMD12_RS10820 SM00479 AMD12_RS10820 AMD12_RS10890 SM00316 Ribosomal protein S1-like RNA-binding domain AMD12_RS10890 SM00732 Likely ribonuclease with RNase H fold. AMD12_RS10895 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS10895 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS10895 SM00091 PAS domain AMD12_RS10895 SM00387 Histidine kinase-like ATPases AMD12_RS10895 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS10895 SM00448 cheY-homologous receiver domain AMD12_RS10900 SM00448 cheY-homologous receiver domain AMD12_RS10985 SM00382 ATPases associated with a variety of cellular activities AMD12_RS11035 SM00382 ATPases associated with a variety of cellular activities AMD12_RS11045 SM00849 Metallo-beta-lactamase superfamily AMD12_RS11060 SM00382 ATPases associated with a variety of cellular activities AMD12_RS11075 SM00226 Low molecular weight phosphatase family AMD12_RS11085 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD12_RS11085 SM00465 GIY-YIG type nucleases (URI domain) AMD12_RS11115 SM00823 Phosphopantetheine attachment site AMD12_RS11150 SM00984 UDP binding domain AMD12_RS11170 SM00450 Rhodanese Homology Domain AMD12_RS11175 SM00421 helix_turn_helix, Lux Regulon AMD12_RS11175 SM00448 cheY-homologous receiver domain AMD12_RS11180 SM00316 Ribosomal protein S1-like RNA-binding domain AMD12_RS11185 SM00363 S4 RNA-binding domain AMD12_RS11225 SM01034 Sensors of blue-light using FAD AMD12_RS11335 SM00448 cheY-homologous receiver domain AMD12_RS11335 SM00850 LytTr DNA-binding domain AMD12_RS11355 SM00869 Autotransporter beta-domain AMD12_RS11375 SM00387 Histidine kinase-like ATPases AMD12_RS11375 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS11380 SM00421 helix_turn_helix, Lux Regulon AMD12_RS11380 SM00448 cheY-homologous receiver domain AMD12_RS11385 SM00869 Autotransporter beta-domain AMD12_RS11390 SM00052 Putative diguanylate phosphodiesterase AMD12_RS11415 SM00448 cheY-homologous receiver domain AMD12_RS11460 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS11465 SM00387 Histidine kinase-like ATPases AMD12_RS11470 SM00421 helix_turn_helix, Lux Regulon AMD12_RS11470 SM00448 cheY-homologous receiver domain AMD12_RS11475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS11515 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS11580 SM00966 SpoVT / AbrB like domain AMD12_RS11625 SM00736 Dystroglycan-type cadherin-like domains. AMD12_RS11645 SM00382 ATPases associated with a variety of cellular activities AMD12_RS11815 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS11855 SM00487 DEAD-like helicases superfamily AMD12_RS12110 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD12_RS12110 SM01240 AMD12_RS12110 AMD12_RS12135 SM00822 AMD12_RS12135 AMD12_RS12145 SM00028 Tetratricopeptide repeats AMD12_RS12155 SM00411 bacterial (prokaryotic) histone like domain AMD12_RS12160 SM00316 Ribosomal protein S1-like RNA-binding domain AMD12_RS12235 SM00354 helix_turn _helix lactose operon repressor AMD12_RS12260 SM00363 S4 RNA-binding domain AMD12_RS12285 SM00382 ATPases associated with a variety of cellular activities AMD12_RS12335 SM00357 Cold shock protein domain AMD12_RS12340 SM00382 ATPases associated with a variety of cellular activities AMD12_RS12345 SM00382 ATPases associated with a variety of cellular activities AMD12_RS12375 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD12_RS12385 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD12_RS12400 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD12_RS12440 SM00840 AMD12_RS12440 AMD12_RS12465 SM01234 AMD12_RS12465 AMD12_RS12505 SM00849 Metallo-beta-lactamase superfamily AMD12_RS12560 SM00841 Elongation factor P, C-terminal AMD12_RS12560 SM01185 AMD12_RS12560 AMD12_RS12570 SM00052 Putative diguanylate phosphodiesterase AMD12_RS12570 SM00267 diguanylate cyclase AMD12_RS12570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS12605 SM00382 ATPases associated with a variety of cellular activities AMD12_RS12610 SM00487 DEAD-like helicases superfamily AMD12_RS12610 SM00490 helicase superfamily c-terminal domain AMD12_RS12635 SM00357 Cold shock protein domain AMD12_RS12640 SM01322 AMD12_RS12640 AMD12_RS12650 SM00052 Putative diguanylate phosphodiesterase AMD12_RS12650 SM00267 diguanylate cyclase AMD12_RS12665 SM00822 AMD12_RS12665 AMD12_RS12685 SM00853 MutL C terminal dimerisation domain AMD12_RS12685 SM01340 AMD12_RS12685 AMD12_RS12690 SM00646 AMD12_RS12690 AMD12_RS12725 SM00474 3'-5' exonuclease AMD12_RS12740 SM00528 Domain in histone-like proteins of HNS family AMD12_RS12825 SM00857 Resolvase, N terminal domain AMD12_RS12895 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS12895 SM00267 diguanylate cyclase AMD12_RS12900 SM00260 Two component signalling adaptor domain AMD12_RS12905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS12905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS12915 SM00487 DEAD-like helicases superfamily AMD12_RS12915 SM00490 helicase superfamily c-terminal domain AMD12_RS12970 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD12_RS12995 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD12_RS12995 SM01091 Transporter associated domain AMD12_RS13030 SM00382 ATPases associated with a variety of cellular activities AMD12_RS13060 SM01230 AMD12_RS13060 AMD12_RS13070 SM01230 AMD12_RS13070 AMD12_RS13080 SM00267 diguanylate cyclase AMD12_RS13080 SM00448 cheY-homologous receiver domain AMD12_RS13135 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS13135 SM00091 PAS domain AMD12_RS13135 SM00387 Histidine kinase-like ATPases AMD12_RS13135 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS13135 SM00448 cheY-homologous receiver domain AMD12_RS13135 SM01079 AMD12_RS13135 AMD12_RS13140 SM00448 cheY-homologous receiver domain AMD12_RS13140 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD12_RS13170 SM00354 helix_turn _helix lactose operon repressor AMD12_RS13230 SM01323 AMD12_RS13230 AMD12_RS13245 SM00344 helix_turn_helix ASNC type AMD12_RS13325 SM00387 Histidine kinase-like ATPases AMD12_RS13370 SM00944 Pro-kumamolisin, activation domain AMD12_RS13420 SM01130 AMD12_RS13420 AMD12_RS13445 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS13450 SM00382 ATPases associated with a variety of cellular activities AMD12_RS13450 SM00962 SRP54-type protein, GTPase domain AMD12_RS13450 SM00963 SRP54-type protein, helical bundle domain AMD12_RS13455 SM00478 endonuclease III AMD12_RS13465 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS13465 SM00091 PAS domain AMD12_RS13465 SM00387 Histidine kinase-like ATPases AMD12_RS13465 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS13465 SM00448 cheY-homologous receiver domain AMD12_RS13480 SM00465 GIY-YIG type nucleases (URI domain) AMD12_RS13510 SM00507 HNH nucleases AMD12_RS13515 SM00861 Transketolase, pyrimidine binding domain AMD12_RS13540 SM00849 Metallo-beta-lactamase superfamily AMD12_RS13625 SM00422 helix_turn_helix, mercury resistance AMD12_RS13630 SM00411 bacterial (prokaryotic) histone like domain AMD12_RS13635 SM00873 B3/4 domain AMD12_RS13635 SM00874 tRNA synthetase B5 domain AMD12_RS13635 SM00896 Ferredoxin-fold anticodon binding domain AMD12_RS13660 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD12_RS13665 SM00354 helix_turn _helix lactose operon repressor AMD12_RS13670 SM00642 Alpha-amylase domain AMD12_RS13700 SM00642 Alpha-amylase domain AMD12_RS13745 SM00382 ATPases associated with a variety of cellular activities AMD12_RS13805 SM00487 DEAD-like helicases superfamily AMD12_RS13805 SM00490 helicase superfamily c-terminal domain AMD12_RS14055 SM01001 AIR carboxylase AMD12_RS14075 SM00316 Ribosomal protein S1-like RNA-binding domain AMD12_RS14075 SM00322 K homology RNA-binding domain AMD12_RS14080 SM01387 AMD12_RS14080 AMD12_RS14100 SM00316 Ribosomal protein S1-like RNA-binding domain AMD12_RS14100 SM00322 K homology RNA-binding domain AMD12_RS14150 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD12_RS14155 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD12_RS14200 SM00822 AMD12_RS14200 AMD12_RS14215 SM00052 Putative diguanylate phosphodiesterase AMD12_RS14215 SM00267 diguanylate cyclase AMD12_RS14215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS14290 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD12_RS14320 SM00257 Lysin motif AMD12_RS14350 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD12_RS14415 SM01160 AMD12_RS14415 AMD12_RS14470 SM00098 Alkaline phosphatase homologues AMD12_RS14475 SM00977 TilS substrate C-terminal domain AMD12_RS14490 SM01351 AMD12_RS14490 AMD12_RS14525 SM00316 Ribosomal protein S1-like RNA-binding domain AMD12_RS14660 SM00382 ATPases associated with a variety of cellular activities AMD12_RS14690 SM00448 cheY-homologous receiver domain AMD12_RS14690 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS14695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS14695 SM00387 Histidine kinase-like ATPases AMD12_RS14695 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS14730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS14730 SM00267 diguanylate cyclase AMD12_RS14735 SM00363 S4 RNA-binding domain AMD12_RS14740 SM00052 Putative diguanylate phosphodiesterase AMD12_RS14740 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS14740 SM00091 PAS domain AMD12_RS14740 SM00267 diguanylate cyclase AMD12_RS14745 SM00487 DEAD-like helicases superfamily AMD12_RS14745 SM00490 helicase superfamily c-terminal domain AMD12_RS14790 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS14790 SM00478 endonuclease III AMD12_RS14790 SM01009 AlkA N-terminal domain AMD12_RS14810 SM00829 Enoylreductase AMD12_RS14875 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS14945 SM00645 Papain family cysteine protease AMD12_RS14950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS14950 SM00387 Histidine kinase-like ATPases AMD12_RS14950 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS14955 SM00448 cheY-homologous receiver domain AMD12_RS14955 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS14970 SM00487 DEAD-like helicases superfamily AMD12_RS14970 SM00490 helicase superfamily c-terminal domain AMD12_RS14970 SM00982 AMD12_RS14970 AMD12_RS14970 SM01058 CarD-like/TRCF domain AMD12_RS15005 SM00073 Histidine Phosphotransfer domain AMD12_RS15005 SM00260 Two component signalling adaptor domain AMD12_RS15005 SM00387 Histidine kinase-like ATPases AMD12_RS15005 SM01231 AMD12_RS15005 AMD12_RS15010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS15010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS15015 SM00260 Two component signalling adaptor domain AMD12_RS15020 SM00052 Putative diguanylate phosphodiesterase AMD12_RS15020 SM00448 cheY-homologous receiver domain AMD12_RS15025 SM00138 Methyltransferase, chemotaxis proteins AMD12_RS15030 SM00448 cheY-homologous receiver domain AMD12_RS15035 SM00155 Phospholipase D. Active site motifs. AMD12_RS15050 SM00855 Phosphoglycerate mutase family AMD12_RS15100 SM00248 ankyrin repeats AMD12_RS15145 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD12_RS15150 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD12_RS15160 SM00829 Enoylreductase AMD12_RS15165 SM00267 diguanylate cyclase AMD12_RS15170 SM00487 DEAD-like helicases superfamily AMD12_RS15265 SM00732 Likely ribonuclease with RNase H fold. AMD12_RS15300 SM00382 ATPases associated with a variety of cellular activities AMD12_RS15315 SM00411 bacterial (prokaryotic) histone like domain AMD12_RS15345 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AMD12_RS15360 SM00382 ATPases associated with a variety of cellular activities AMD12_RS15390 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD12_RS15395 SM00671 Sel1-like repeats. AMD12_RS15425 SM00054 EF-hand, calcium binding motif AMD12_RS15515 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD12_RS15535 SM00382 ATPases associated with a variety of cellular activities AMD12_RS15580 SM00924 MgtE intracellular N domain AMD12_RS15610 SM00656 AMD12_RS15610 AMD12_RS15625 SM00421 helix_turn_helix, Lux Regulon AMD12_RS15650 SM00849 Metallo-beta-lactamase superfamily AMD12_RS15660 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD12_RS15680 SM00422 helix_turn_helix, mercury resistance AMD12_RS15820 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS15830 SM00387 Histidine kinase-like ATPases AMD12_RS15830 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS15830 SM00448 cheY-homologous receiver domain AMD12_RS15835 SM00387 Histidine kinase-like ATPases AMD12_RS15835 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS15835 SM00448 cheY-homologous receiver domain AMD12_RS15845 SM00387 Histidine kinase-like ATPases AMD12_RS15845 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS15845 SM00448 cheY-homologous receiver domain AMD12_RS15850 SM00867 YceI-like domain AMD12_RS15860 SM00867 YceI-like domain AMD12_RS15915 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD12_RS15945 SM00028 Tetratricopeptide repeats AMD12_RS16045 SM00812 Alpha-L-fucosidase AMD12_RS16050 SM00636 AMD12_RS16050 AMD12_RS16065 SM00758 AMD12_RS16065 AMD12_RS16065 SM01217 AMD12_RS16065 AMD12_RS16095 SM01149 AMD12_RS16095 AMD12_RS16155 SM00260 Two component signalling adaptor domain AMD12_RS16165 SM00073 Histidine Phosphotransfer domain AMD12_RS16165 SM00260 Two component signalling adaptor domain AMD12_RS16165 SM00387 Histidine kinase-like ATPases AMD12_RS16165 SM00448 cheY-homologous receiver domain AMD12_RS16165 SM01231 AMD12_RS16165 AMD12_RS16170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS16175 SM00260 Two component signalling adaptor domain AMD12_RS16180 SM00448 cheY-homologous receiver domain AMD12_RS16185 SM00448 cheY-homologous receiver domain AMD12_RS16210 SM00491 AMD12_RS16210 AMD12_RS16235 SM00954 Region found in RelA / SpoT proteins AMD12_RS16280 SM00382 ATPases associated with a variety of cellular activities AMD12_RS16280 SM00487 DEAD-like helicases superfamily AMD12_RS16280 SM00490 helicase superfamily c-terminal domain AMD12_RS16280 SM00847 Helicase associated domain (HA2) Add an annotation AMD12_RS16290 SM00341 Helicase and RNase D C-terminal AMD12_RS16290 SM00487 DEAD-like helicases superfamily AMD12_RS16290 SM00490 helicase superfamily c-terminal domain AMD12_RS16290 SM00956 AMD12_RS16290 AMD12_RS16300 SM00448 cheY-homologous receiver domain AMD12_RS16325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS16325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS16340 SM00448 cheY-homologous receiver domain AMD12_RS16345 SM00091 PAS domain AMD12_RS16345 SM00911 HWE histidine kinase AMD12_RS16400 SM00382 ATPases associated with a variety of cellular activities AMD12_RS16415 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD12_RS16450 SM00834 Putative regulatory protein AMD12_RS16490 SM00382 ATPases associated with a variety of cellular activities AMD12_RS16595 SM00855 Phosphoglycerate mutase family AMD12_RS16645 SM00382 ATPases associated with a variety of cellular activities AMD12_RS16645 SM01086 C-terminal, D2-small domain, of ClpB protein AMD12_RS16650 SM00382 ATPases associated with a variety of cellular activities AMD12_RS16660 SM00062 Bacterial periplasmic substrate-binding proteins AMD12_RS16735 SM00564 beta-propeller repeat AMD12_RS16740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS16845 SM01126 AMD12_RS16845 AMD12_RS16855 SM00881 CoA binding domain AMD12_RS16865 SM00387 Histidine kinase-like ATPases AMD12_RS16865 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS16870 SM00382 ATPases associated with a variety of cellular activities AMD12_RS16870 SM00448 cheY-homologous receiver domain AMD12_RS16935 SM00387 Histidine kinase-like ATPases AMD12_RS16935 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS16940 SM00448 cheY-homologous receiver domain AMD12_RS16940 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS16955 SM00642 Alpha-amylase domain AMD12_RS16960 SM00528 Domain in histone-like proteins of HNS family AMD12_RS16970 SM00318 Staphylococcal nuclease homologues AMD12_RS17035 SM00387 Histidine kinase-like ATPases AMD12_RS17035 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS17040 SM00448 cheY-homologous receiver domain AMD12_RS17055 SM01034 Sensors of blue-light using FAD AMD12_RS17105 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS17125 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS17125 SM00387 Histidine kinase-like ATPases AMD12_RS17150 SM00255 Toll - interleukin 1 - resistance AMD12_RS17165 SM00869 Autotransporter beta-domain AMD12_RS17220 SM00354 helix_turn _helix lactose operon repressor AMD12_RS17250 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD12_RS17360 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS17360 SM00387 Histidine kinase-like ATPases AMD12_RS17395 SM00506 Appr-1"-p processing enzyme AMD12_RS17435 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD12_RS17460 SM00849 Metallo-beta-lactamase superfamily AMD12_RS17475 SM00382 ATPases associated with a variety of cellular activities AMD12_RS17540 SM00861 Transketolase, pyrimidine binding domain AMD12_RS17555 SM00028 Tetratricopeptide repeats AMD12_RS17555 SM00327 von Willebrand factor (vWF) type A domain AMD12_RS17560 SM00327 von Willebrand factor (vWF) type A domain AMD12_RS17575 SM00382 ATPases associated with a variety of cellular activities AMD12_RS17580 SM00965 Secretin and TonB N terminus short domain AMD12_RS17630 SM00487 DEAD-like helicases superfamily AMD12_RS17630 SM00490 helicase superfamily c-terminal domain AMD12_RS17640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD12_RS17640 SM00954 Region found in RelA / SpoT proteins AMD12_RS17645 SM01409 AMD12_RS17645 AMD12_RS17650 SM00072 Guanylate kinase homologues. AMD12_RS17675 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD12_RS17700 SM01011 Aminopeptidase P, N-terminal domain AMD12_RS17770 SM00028 Tetratricopeptide repeats AMD12_RS17770 SM00382 ATPases associated with a variety of cellular activities AMD12_RS17770 SM00421 helix_turn_helix, Lux Regulon AMD12_RS17840 SM00464 Found in ATP-dependent protease La (LON) AMD12_RS17890 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS17895 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS17910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS17940 SM00917 LeuA allosteric (dimerisation) domain AMD12_RS17945 SM01329 AMD12_RS17945 AMD12_RS17965 SM00267 diguanylate cyclase AMD12_RS18015 SM00919 Malic enzyme, NAD binding domain AMD12_RS18015 SM01274 AMD12_RS18015 AMD12_RS18030 SM00387 Histidine kinase-like ATPases AMD12_RS18030 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS18030 SM00448 cheY-homologous receiver domain AMD12_RS18065 SM00421 helix_turn_helix, Lux Regulon AMD12_RS18065 SM00448 cheY-homologous receiver domain AMD12_RS18075 SM00387 Histidine kinase-like ATPases AMD12_RS18075 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS18080 SM00448 cheY-homologous receiver domain AMD12_RS18080 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS18095 SM00822 AMD12_RS18095 AMD12_RS18100 SM00354 helix_turn _helix lactose operon repressor AMD12_RS18115 SM00642 Alpha-amylase domain AMD12_RS18125 SM01154 AMD12_RS18125 AMD12_RS18160 SM00450 Rhodanese Homology Domain AMD12_RS18220 SM00028 Tetratricopeptide repeats AMD12_RS18305 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD12_RS18305 SM00866 AMD12_RS18305 AMD12_RS18365 SM00382 ATPases associated with a variety of cellular activities AMD12_RS18395 SM01211 AMD12_RS18395 AMD12_RS18460 SM00656 AMD12_RS18460 AMD12_RS18490 SM00528 Domain in histone-like proteins of HNS family AMD12_RS18505 SM00382 ATPases associated with a variety of cellular activities AMD12_RS18535 SM00882 Coenzyme A transferase AMD12_RS18540 SM00882 Coenzyme A transferase AMD12_RS18555 SM00984 UDP binding domain AMD12_RS18580 SM00893 Electron transfer flavoprotein domain AMD12_RS18585 SM00893 Electron transfer flavoprotein domain AMD12_RS18655 SM00382 ATPases associated with a variety of cellular activities AMD12_RS18670 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD12_RS18710 SM00487 DEAD-like helicases superfamily AMD12_RS18710 SM00490 helicase superfamily c-terminal domain AMD12_RS18745 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS18780 SM00825 Beta-ketoacyl synthase AMD12_RS18850 SM00382 ATPases associated with a variety of cellular activities AMD12_RS18870 SM00382 ATPases associated with a variety of cellular activities AMD12_RS18870 SM00448 cheY-homologous receiver domain AMD12_RS18875 SM00387 Histidine kinase-like ATPases AMD12_RS18890 SM00830 Chorismate mutase type II AMD12_RS18900 SM00382 ATPases associated with a variety of cellular activities AMD12_RS18970 SM00986 Uracil DNA glycosylase superfamily AMD12_RS18970 SM00987 UreE urease accessory protein, C-terminal domain AMD12_RS19010 SM00382 ATPases associated with a variety of cellular activities AMD12_RS19010 SM00930 AMD12_RS19010 AMD12_RS19030 SM00387 Histidine kinase-like ATPases AMD12_RS19030 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS19030 SM00448 cheY-homologous receiver domain AMD12_RS19085 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS19085 SM00091 PAS domain AMD12_RS19085 SM00387 Histidine kinase-like ATPases AMD12_RS19085 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS19085 SM00448 cheY-homologous receiver domain AMD12_RS19105 SM01005 Alanine racemase, C-terminal domain AMD12_RS19115 SM00344 helix_turn_helix ASNC type AMD12_RS19170 SM00382 ATPases associated with a variety of cellular activities AMD12_RS19180 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AMD12_RS19185 SM00986 Uracil DNA glycosylase superfamily AMD12_RS19185 SM00987 UreE urease accessory protein, C-terminal domain AMD12_RS19190 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD12_RS19255 SM00448 cheY-homologous receiver domain AMD12_RS19255 SM00850 LytTr DNA-binding domain AMD12_RS19260 SM00387 Histidine kinase-like ATPases AMD12_RS19300 SM00091 PAS domain AMD12_RS19300 SM00138 Methyltransferase, chemotaxis proteins AMD12_RS19300 SM00911 HWE histidine kinase AMD12_RS19305 SM00448 cheY-homologous receiver domain AMD12_RS19315 SM00382 ATPases associated with a variety of cellular activities AMD12_RS19315 SM00448 cheY-homologous receiver domain AMD12_RS19370 SM00382 ATPases associated with a variety of cellular activities AMD12_RS19445 SM00382 ATPases associated with a variety of cellular activities AMD12_RS19450 SM00631 AMD12_RS19450 AMD12_RS19490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD12_RS19490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS19495 SM00477 DNA/RNA non-specific endonuclease AMD12_RS19495 SM00892 DNA/RNA non-specific endonuclease AMD12_RS19645 SM00257 Lysin motif AMD12_RS19670 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD12_RS19670 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD12_RS19670 SM00493 AMD12_RS19670 AMD12_RS19725 SM00487 DEAD-like helicases superfamily AMD12_RS19725 SM00490 helicase superfamily c-terminal domain AMD12_RS19760 SM00986 Uracil DNA glycosylase superfamily AMD12_RS19760 SM00987 UreE urease accessory protein, C-terminal domain AMD12_RS19765 SM00448 cheY-homologous receiver domain AMD12_RS19775 SM00382 ATPases associated with a variety of cellular activities AMD12_RS19780 SM00487 DEAD-like helicases superfamily AMD12_RS19780 SM00490 helicase superfamily c-terminal domain AMD12_RS19790 SM00357 Cold shock protein domain AMD12_RS19790 SM00382 ATPases associated with a variety of cellular activities AMD12_RS19790 SM00959 Rho termination factor, N-terminal domain AMD12_RS19820 SM00487 DEAD-like helicases superfamily AMD12_RS19860 SM00257 Lysin motif AMD12_RS19890 SM01150 AMD12_RS19890 AMD12_RS19935 SM00644 AMD12_RS19935 AMD12_RS19945 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD12_RS19980 SM01217 AMD12_RS19980 AMD12_RS19985 SM00905 Dihydroneopterin aldolase AMD12_RS20010 SM00400 zinc finger AMD12_RS20010 SM00493 AMD12_RS20010 AMD12_RS20010 SM00766 DNA primase DnaG DnaB-binding AMD12_RS20110 SM00363 S4 RNA-binding domain AMD12_RS20155 SM00470 ParB-like nuclease domain AMD12_RS20175 SM01259 AMD12_RS20175 AMD12_RS20205 SM00836 DALR anticodon binding domain AMD12_RS20205 SM01016 Arginyl tRNA synthetase N terminal dom AMD12_RS20235 SM00823 Phosphopantetheine attachment site AMD12_RS20235 SM00824 Thioesterase AMD12_RS20280 SM00938 Nitrogen regulatory protein P-II AMD12_RS20290 SM00382 ATPases associated with a variety of cellular activities AMD12_RS20380 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS20400 SM00052 Putative diguanylate phosphodiesterase AMD12_RS20430 SM00244 prohibitin homologues AMD12_RS20480 SM00448 cheY-homologous receiver domain AMD12_RS20480 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS20485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD12_RS20485 SM00387 Histidine kinase-like ATPases AMD12_RS20485 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS20505 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD12_RS20550 SM01060 AMD12_RS20550 AMD12_RS20565 SM00421 helix_turn_helix, Lux Regulon AMD12_RS20565 SM00448 cheY-homologous receiver domain AMD12_RS20580 SM00382 ATPases associated with a variety of cellular activities AMD12_RS20620 SM00849 Metallo-beta-lactamase superfamily AMD12_RS20650 SM00960 Roadblock/LC7 domain AMD12_RS20715 SM00387 Histidine kinase-like ATPases AMD12_RS20715 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS20720 SM00448 cheY-homologous receiver domain AMD12_RS20720 SM00862 Transcriptional regulatory protein, C terminal AMD12_RS20740 SM00248 ankyrin repeats AMD12_RS20750 SM00491 AMD12_RS20750 AMD12_RS20780 SM00477 DNA/RNA non-specific endonuclease AMD12_RS20780 SM00892 DNA/RNA non-specific endonuclease AMD12_RS20795 SM01004 Delta-aminolevulinic acid dehydratase AMD12_RS20845 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD12_RS20865 SM00382 ATPases associated with a variety of cellular activities AMD12_RS20875 SM00530 Helix-turn-helix XRE-family like proteins AMD12_RS20915 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS20925 SM00382 ATPases associated with a variety of cellular activities AMD12_RS20985 SM00881 CoA binding domain AMD12_RS20990 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD12_RS20990 SM00924 MgtE intracellular N domain AMD12_RS20995 SM01057 Eukaryotic-type carbonic anhydrase AMD12_RS21020 SM00248 ankyrin repeats AMD12_RS21030 SM00825 Beta-ketoacyl synthase AMD12_RS21055 SM00822 AMD12_RS21055 AMD12_RS21100 SM00563 Phosphate acyltransferases AMD12_RS21155 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD12_RS21155 SM00474 3'-5' exonuclease AMD12_RS21155 SM00475 5'-3' exonuclease AMD12_RS21155 SM00482 DNA polymerase A domain AMD12_RS21170 SM00912 haemagglutination activity domain AMD12_RS21190 SM00331 Sigma factor PP2C-like phosphatases AMD12_RS21190 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD12_RS21215 SM00240 Forkhead associated domain AMD12_RS21230 SM00028 Tetratricopeptide repeats AMD12_RS21240 SM00220 Serine/Threonine protein kinases, catalytic domain AMD12_RS21260 SM00965 Secretin and TonB N terminus short domain AMD12_RS21270 SM00915 Jacalin-like lectin domain AMD12_RS21295 SM00382 ATPases associated with a variety of cellular activities AMD12_RS21295 SM01086 C-terminal, D2-small domain, of ClpB protein AMD12_RS21335 SM00342 helix_turn_helix, arabinose operon control protein AMD12_RS21345 SM01266 AMD12_RS21345 AMD12_RS21365 SM00155 Phospholipase D. Active site motifs. AMD12_RS21505 SM00421 helix_turn_helix, Lux Regulon AMD12_RS21505 SM00448 cheY-homologous receiver domain AMD12_RS21560 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD12_RS21580 SM00346 helix_turn_helix isocitrate lyase regulation AMD12_RS21590 SM00091 PAS domain AMD12_RS21590 SM00387 Histidine kinase-like ATPases AMD12_RS21590 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS21590 SM00448 cheY-homologous receiver domain AMD12_RS21620 SM00564 beta-propeller repeat AMD12_RS21675 SM00382 ATPases associated with a variety of cellular activities AMD12_RS21680 SM00836 DALR anticodon binding domain AMD12_RS21690 SM00382 ATPases associated with a variety of cellular activities AMD12_RS21765 SM00354 helix_turn _helix lactose operon repressor AMD12_RS21780 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD12_RS21790 SM00758 AMD12_RS21790 AMD12_RS21790 SM01217 AMD12_RS21790 AMD12_RS21810 SM00612 AMD12_RS21810 AMD12_RS21840 SM01007 Class II Aldolase and Adducin N-terminal domain AMD12_RS21875 SM00633 Glycosyl hydrolase family 10 AMD12_RS21890 SM00633 Glycosyl hydrolase family 10 AMD12_RS21905 SM00633 Glycosyl hydrolase family 10 AMD12_RS21960 SM00829 Enoylreductase AMD12_RS21965 SM00563 Phosphate acyltransferases AMD12_RS21975 SM00354 helix_turn _helix lactose operon repressor AMD12_RS22000 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD12_RS22035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS22035 SM00388 His Kinase A (phosphoacceptor) domain AMD12_RS22050 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD12_RS22050 SM01232 AMD12_RS22050 AMD12_RS22090 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS22090 SM00091 PAS domain AMD12_RS22145 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD12_RS22180 SM00155 Phospholipase D. Active site motifs. AMD12_RS22265 SM00796 Allophanate hydrolase subunit 1 AMD12_RS22265 SM00797 Allophanate hydrolase subunit 2 AMD12_RS22265 SM00878 Biotin carboxylase C-terminal domain AMD12_RS22325 SM00382 ATPases associated with a variety of cellular activities AMD12_RS22375 SM00829 Enoylreductase AMD12_RS22415 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD12_RS22415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD12_RS22415 SM00091 PAS domain AMD12_RS22415 SM00267 diguanylate cyclase AMD12_RS22445 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD12_RS22470 SM00014 Acid phosphatase homologues AMD12_RS22480 SM00028 Tetratricopeptide repeats