locus-tag class description AMD11_RS00045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS00045 PF01751 Toprim domain AMD11_RS00045 PF00986 DNA gyrase B subunit, carboxyl terminus AMD11_RS00045 PF00204 DNA gyrase B AMD11_RS00045 PF18053 DNA gyrase B subunit insert domain AMD11_RS00075 PF02472 Biopolymer transport protein ExbD/TolR AMD11_RS00085 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD11_RS00225 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD11_RS00280 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS00325 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS00325 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD11_RS00340 PF01645 Conserved region in glutamate synthase AMD11_RS00340 PF00310 Glutamine amidotransferases class-II AMD11_RS00340 PF04898 Glutamate synthase central domain AMD11_RS00340 PF01493 GXGXG motif AMD11_RS00350 PF04898 Glutamate synthase central domain AMD11_RS00350 PF01493 GXGXG motif AMD11_RS00350 PF00310 Glutamine amidotransferases class-II AMD11_RS00350 PF01645 Conserved region in glutamate synthase AMD11_RS00450 PF00733 Asparagine synthase AMD11_RS00450 PF13537 Glutamine amidotransferase domain AMD11_RS00470 PF08299 Bacterial dnaA protein helix-turn-helix AMD11_RS00470 PF00308 Bacterial dnaA protein AMD11_RS00470 PF11638 DnaA N-terminal domain AMD11_RS00475 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD11_RS00475 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD11_RS00475 PF02767 DNA polymerase III beta subunit, central domain AMD11_RS00480 PF02463 RecF/RecN/SMC N terminal domain AMD11_RS00485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS00485 PF01751 Toprim domain AMD11_RS00485 PF00986 DNA gyrase B subunit, carboxyl terminus AMD11_RS00485 PF18053 DNA gyrase B subunit insert domain AMD11_RS00485 PF00204 DNA gyrase B AMD11_RS00495 PF01435 Peptidase family M48 AMD11_RS00505 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS00510 PF01618 MotA/TolQ/ExbB proton channel family AMD11_RS00515 PF02472 Biopolymer transport protein ExbD/TolR AMD11_RS00520 PF02472 Biopolymer transport protein ExbD/TolR AMD11_RS00525 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD11_RS00535 PF13091 PLD-like domain AMD11_RS00535 PF13396 Phospholipase_D-nuclease N-terminal AMD11_RS00550 PF04055 Radical SAM superfamily AMD11_RS00560 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD11_RS00575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD11_RS00575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD11_RS00580 PF13180 PDZ domain AMD11_RS00580 PF03572 Peptidase family S41 AMD11_RS00585 PF01551 Peptidase family M23 AMD11_RS00595 PF04389 Peptidase family M28 AMD11_RS00605 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS00610 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS00615 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS00620 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS00620 PF00107 Zinc-binding dehydrogenase AMD11_RS00625 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD11_RS00625 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS00630 PF01493 GXGXG motif AMD11_RS00630 PF01645 Conserved region in glutamate synthase AMD11_RS00630 PF04898 Glutamate synthase central domain AMD11_RS00630 PF00310 Glutamine amidotransferases class-II AMD11_RS00660 PF03466 LysR substrate binding domain AMD11_RS00660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS00675 PF02397 Bacterial sugar transferase AMD11_RS00680 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD11_RS00690 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD11_RS00695 PF00534 Glycosyl transferases group 1 AMD11_RS00695 PF13439 Glycosyltransferase Family 4 AMD11_RS00715 PF13537 Glutamine amidotransferase domain AMD11_RS00715 PF00733 Asparagine synthase AMD11_RS00730 PF16363 GDP-mannose 4,6 dehydratase AMD11_RS00745 PF00664 ABC transporter transmembrane region AMD11_RS00745 PF00005 ABC transporter AMD11_RS00760 PF00733 Asparagine synthase AMD11_RS00760 PF13537 Glutamine amidotransferase domain AMD11_RS00775 PF07475 HPr Serine kinase C-terminal domain AMD11_RS00775 PF02603 HPr Serine kinase N terminus AMD11_RS00780 PF00685 Sulfotransferase domain AMD11_RS00855 PF00270 DEAD/DEAH box helicase AMD11_RS00855 PF00271 Helicase conserved C-terminal domain AMD11_RS00855 PF09369 Domain of unknown function (DUF1998) AMD11_RS00860 PF03006 Haemolysin-III related AMD11_RS00875 PF00106 short chain dehydrogenase AMD11_RS00885 PF03466 LysR substrate binding domain AMD11_RS00885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS00900 PF02525 Flavodoxin-like fold AMD11_RS00960 PF05532 CsbD-like AMD11_RS00980 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD11_RS00980 PF16485 Protealysin propeptide AMD11_RS00980 PF01447 Thermolysin metallopeptidase, catalytic domain AMD11_RS00990 PF13344 Haloacid dehalogenase-like hydrolase AMD11_RS00990 PF00293 NUDIX domain AMD11_RS01010 PF00085 Thioredoxin AMD11_RS01020 PF00083 Sugar (and other) transporter AMD11_RS01020 PF08946 Osmosensory transporter coiled coil AMD11_RS01060 PF17863 AAA lid domain AMD11_RS01060 PF07726 ATPase family associated with various cellular activities (AAA) AMD11_RS01090 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMD11_RS01095 PF00155 Aminotransferase class I and II AMD11_RS01100 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS01100 PF00593 TonB dependent receptor AMD11_RS01110 PF07883 Cupin domain AMD11_RS01115 PF00171 Aldehyde dehydrogenase family AMD11_RS01135 PF02735 Ku70/Ku80 beta-barrel domain AMD11_RS01140 PF01070 FMN-dependent dehydrogenase AMD11_RS01150 PF00144 Beta-lactamase AMD11_RS01155 PF07730 Histidine kinase AMD11_RS01160 PF00072 Response regulator receiver domain AMD11_RS01160 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS01180 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS01180 PF18500 CadC C-terminal domain 1 AMD11_RS01185 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMD11_RS01185 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMD11_RS01185 PF07055 Enoyl reductase FAD binding domain AMD11_RS01195 PF00294 pfkB family carbohydrate kinase AMD11_RS01255 PF13276 HTH-like domain AMD11_RS01255 PF00665 Integrase core domain AMD11_RS01255 PF13333 Integrase core domain AMD11_RS01260 PF11896 Domain of unknown function (DUF3416) AMD11_RS01260 PF00128 Alpha amylase, catalytic domain AMD11_RS01265 PF16657 Maltogenic Amylase, C-terminal domain AMD11_RS01265 PF00128 Alpha amylase, catalytic domain AMD11_RS01270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS01270 PF02806 Alpha amylase, C-terminal all-beta domain AMD11_RS01270 PF00128 Alpha amylase, catalytic domain AMD11_RS01280 PF00248 Aldo/keto reductase family AMD11_RS01285 PF00135 Carboxylesterase family AMD11_RS01290 PF13472 GDSL-like Lipase/Acylhydrolase family AMD11_RS01290 PF07859 alpha/beta hydrolase fold AMD11_RS01300 PF03480 Bacterial extracellular solute-binding protein, family 7 AMD11_RS01310 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMD11_RS01315 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD11_RS01315 PF04616 Glycosyl hydrolases family 43 AMD11_RS01320 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS01325 PF04962 KduI/IolB family AMD11_RS01340 PF00657 GDSL-like Lipase/Acylhydrolase AMD11_RS01355 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMD11_RS01360 PF01037 Lrp/AsnC ligand binding domain AMD11_RS01365 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS01365 PF07660 Secretin and TonB N terminus short domain AMD11_RS01365 PF00593 TonB dependent receptor AMD11_RS01370 PF01734 Patatin-like phospholipase AMD11_RS01380 PF00005 ABC transporter AMD11_RS01395 PF00005 ABC transporter AMD11_RS01400 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS01410 PF03781 Sulfatase-modifying factor enzyme 1 AMD11_RS01410 PF12867 DinB superfamily AMD11_RS01430 PF01381 Helix-turn-helix AMD11_RS01455 PF10609 NUBPL iron-transfer P-loop NTPase AMD11_RS01455 PF01883 Iron-sulfur cluster assembly protein AMD11_RS01470 PF13091 PLD-like domain AMD11_RS01475 PF03061 Thioesterase superfamily AMD11_RS01505 PF00107 Zinc-binding dehydrogenase AMD11_RS01505 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS01515 PF02673 Bacitracin resistance protein BacA AMD11_RS01520 PF03951 Glutamine synthetase, beta-Grasp domain AMD11_RS01520 PF00120 Glutamine synthetase, catalytic domain AMD11_RS01525 PF00543 Nitrogen regulatory protein P-II AMD11_RS01530 PF00909 Ammonium Transporter Family AMD11_RS01535 PF00989 PAS fold AMD11_RS01535 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS01540 PF00158 Sigma-54 interaction domain AMD11_RS01540 PF02954 Bacterial regulatory protein, Fis family AMD11_RS01540 PF00072 Response regulator receiver domain AMD11_RS01545 PF00080 Copper/zinc superoxide dismutase (SODC) AMD11_RS01550 PF00080 Copper/zinc superoxide dismutase (SODC) AMD11_RS01555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS01565 PF00108 Thiolase, N-terminal domain AMD11_RS01565 PF02803 Thiolase, C-terminal domain AMD11_RS01600 PF00581 Rhodanese-like domain AMD11_RS01605 PF02556 Preprotein translocase subunit SecB AMD11_RS01610 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD11_RS01610 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD11_RS01620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD11_RS01620 PF00205 Thiamine pyrophosphate enzyme, central domain AMD11_RS01620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD11_RS01625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS01630 PF00072 Response regulator receiver domain AMD11_RS01630 PF02954 Bacterial regulatory protein, Fis family AMD11_RS01630 PF00158 Sigma-54 interaction domain AMD11_RS01645 PF07690 Major Facilitator Superfamily AMD11_RS01650 PF00588 SpoU rRNA Methylase family AMD11_RS01665 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD11_RS01665 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD11_RS01670 PF02661 Fic/DOC family AMD11_RS01670 PF13784 Fic/DOC family N-terminal AMD11_RS01675 PF00561 alpha/beta hydrolase fold AMD11_RS01680 PF03692 Putative zinc- or iron-chelating domain AMD11_RS01685 PF00501 AMP-binding enzyme AMD11_RS01690 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD11_RS01705 PF01820 D-ala D-ala ligase N-terminus AMD11_RS01705 PF07478 D-ala D-ala ligase C-terminus AMD11_RS01715 PF03109 ABC1 family AMD11_RS01725 PF00849 RNA pseudouridylate synthase AMD11_RS01735 PF00472 RF-1 domain AMD11_RS01745 PF01112 Asparaginase AMD11_RS01750 PF01432 Peptidase family M3 AMD11_RS01755 PF12706 Beta-lactamase superfamily domain AMD11_RS01775 PF12833 Helix-turn-helix domain AMD11_RS01780 PF00999 Sodium/hydrogen exchanger family AMD11_RS01785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS01785 PF03466 LysR substrate binding domain AMD11_RS01790 PF01274 Malate synthase AMD11_RS01795 PF00463 Isocitrate lyase family AMD11_RS01800 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS01820 PF00326 Prolyl oligopeptidase family AMD11_RS01825 PF18140 Propionyl-coenzyme A carboxylase BT domain AMD11_RS01825 PF00364 Biotin-requiring enzyme AMD11_RS01825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD11_RS01825 PF02785 Biotin carboxylase C-terminal domain AMD11_RS01825 PF00289 Biotin carboxylase, N-terminal domain AMD11_RS01830 PF01039 Carboxyl transferase domain AMD11_RS01835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS01835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS01835 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS01890 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMD11_RS01890 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMD11_RS01915 PF03969 AFG1-like ATPase AMD11_RS01920 PF01047 MarR family AMD11_RS01925 PF02566 OsmC-like protein AMD11_RS01955 PF00107 Zinc-binding dehydrogenase AMD11_RS01955 PF16884 N-terminal domain of oxidoreductase AMD11_RS01960 PF00248 Aldo/keto reductase family AMD11_RS01970 PF00849 RNA pseudouridylate synthase AMD11_RS01975 PF00593 TonB dependent receptor AMD11_RS01985 PF00270 DEAD/DEAH box helicase AMD11_RS01985 PF04408 Helicase associated domain (HA2) AMD11_RS01985 PF00271 Helicase conserved C-terminal domain AMD11_RS01985 PF08482 ATP-dependent helicase C-terminal AMD11_RS01995 PF07308 Protein of unknown function (DUF1456) AMD11_RS02000 PF00576 HIUase/Transthyretin family AMD11_RS02005 PF13454 FAD-NAD(P)-binding AMD11_RS02010 PF09349 OHCU decarboxylase AMD11_RS02010 PF01014 Uricase AMD11_RS02025 PF00266 Aminotransferase class-V AMD11_RS02030 PF07687 Peptidase dimerisation domain AMD11_RS02030 PF01546 Peptidase family M20/M25/M40 AMD11_RS02035 PF03466 LysR substrate binding domain AMD11_RS02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS02040 PF07690 Major Facilitator Superfamily AMD11_RS02055 PF01425 Amidase AMD11_RS02060 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD11_RS02070 PF00860 Permease family AMD11_RS02080 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS02085 PF00355 Rieske [2Fe-2S] domain AMD11_RS02090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS02090 PF03466 LysR substrate binding domain AMD11_RS02095 PF01026 TatD related DNase AMD11_RS02110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS02110 PF03466 LysR substrate binding domain AMD11_RS02115 PF07690 Major Facilitator Superfamily AMD11_RS02130 PF02146 Sir2 family AMD11_RS02135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD11_RS02140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD11_RS02140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD11_RS02150 PF00551 Formyl transferase AMD11_RS02155 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS02155 PF00072 Response regulator receiver domain AMD11_RS02160 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS02160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS02160 PF00672 HAMP domain AMD11_RS02165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS02165 PF00529 HlyD membrane-fusion protein of T1SS AMD11_RS02170 PF00873 AcrB/AcrD/AcrF family AMD11_RS02175 PF02321 Outer membrane efflux protein AMD11_RS02185 PF02219 Methylenetetrahydrofolate reductase AMD11_RS02190 PF02677 Epoxyqueuosine reductase QueH AMD11_RS02195 PF03466 LysR substrate binding domain AMD11_RS02195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS02200 PF03358 NADPH-dependent FMN reductase AMD11_RS02210 PF01717 Cobalamin-independent synthase, Catalytic domain AMD11_RS02210 PF08267 Cobalamin-independent synthase, N-terminal domain AMD11_RS02215 PF03812 2-keto-3-deoxygluconate permease AMD11_RS02225 PF05368 NmrA-like family AMD11_RS02230 PF01638 HxlR-like helix-turn-helix AMD11_RS02255 PF00665 Integrase core domain AMD11_RS02255 PF13333 Integrase core domain AMD11_RS02255 PF13276 HTH-like domain AMD11_RS02265 PF13495 Phage integrase, N-terminal SAM-like domain AMD11_RS02265 PF00589 Phage integrase family AMD11_RS02270 PF00920 Dehydratase family AMD11_RS02290 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS02300 PF07690 Major Facilitator Superfamily AMD11_RS02305 PF01966 HD domain AMD11_RS02305 PF11871 Domain of unknown function (DUF3391) AMD11_RS02325 PF00171 Aldehyde dehydrogenase family AMD11_RS02335 PF01494 FAD binding domain AMD11_RS02345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD11_RS02345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD11_RS02350 PF00230 Major intrinsic protein AMD11_RS02355 PF01266 FAD dependent oxidoreductase AMD11_RS02355 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMD11_RS02360 PF08220 DeoR-like helix-turn-helix domain AMD11_RS02360 PF00455 DeoR C terminal sensor domain AMD11_RS02365 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS02365 PF00970 Oxidoreductase FAD-binding domain AMD11_RS02370 PF00355 Rieske [2Fe-2S] domain AMD11_RS02375 PF01144 Coenzyme A transferase AMD11_RS02380 PF01144 Coenzyme A transferase AMD11_RS02385 PF02803 Thiolase, C-terminal domain AMD11_RS02385 PF00108 Thiolase, N-terminal domain AMD11_RS02390 PF00775 Dioxygenase AMD11_RS02390 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMD11_RS02400 PF10397 Adenylosuccinate lyase C-terminus AMD11_RS02400 PF00206 Lyase AMD11_RS02405 PF12146 Serine aminopeptidase, S33 AMD11_RS02410 PF02627 Carboxymuconolactone decarboxylase family AMD11_RS02420 PF01614 Bacterial transcriptional regulator AMD11_RS02420 PF09339 IclR helix-turn-helix domain AMD11_RS02430 PF07859 alpha/beta hydrolase fold AMD11_RS02435 PF10677 Protein of unknown function (DUF2490) AMD11_RS02440 PF13932 GidA associated domain AMD11_RS02440 PF01134 Glucose inhibited division protein A AMD11_RS02450 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS02470 PF13649 Methyltransferase domain AMD11_RS02480 PF12697 Alpha/beta hydrolase family AMD11_RS02490 PF00155 Aminotransferase class I and II AMD11_RS02495 PF06968 Biotin and Thiamin Synthesis associated domain AMD11_RS02495 PF04055 Radical SAM superfamily AMD11_RS02505 PF01040 UbiA prenyltransferase family AMD11_RS02520 PF05819 NolX protein AMD11_RS02555 PF01313 Bacterial export proteins, family 3 AMD11_RS02560 PF00813 FliP family AMD11_RS02575 PF00771 FHIPEP family AMD11_RS02580 PF01312 FlhB HrpN YscU SpaS Family AMD11_RS02595 PF01514 Secretory protein of YscJ/FliF family AMD11_RS02610 PF18269 T3SS EscN ATPase C-terminal domain AMD11_RS02610 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD11_RS02610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS02620 PF01311 Bacterial export proteins, family 1 AMD11_RS02625 PF03958 Bacterial type II/III secretion system short domain AMD11_RS02625 PF00263 Bacterial type II and III secretion system protein AMD11_RS02635 PF01464 Transglycosylase SLT domain AMD11_RS02650 PF12795 Mechanosensitive ion channel porin domain AMD11_RS02650 PF00924 Mechanosensitive ion channel AMD11_RS02650 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMD11_RS02655 PF00884 Sulfatase AMD11_RS02660 PF03109 ABC1 family AMD11_RS02665 PF05661 Protein of unknown function (DUF808) AMD11_RS02670 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS02675 PF08323 Starch synthase catalytic domain AMD11_RS02675 PF00534 Glycosyl transferases group 1 AMD11_RS02680 PF02806 Alpha amylase, C-terminal all-beta domain AMD11_RS02680 PF00128 Alpha amylase, catalytic domain AMD11_RS02680 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS02685 PF00128 Alpha amylase, catalytic domain AMD11_RS02685 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS02685 PF11941 Domain of unknown function (DUF3459) AMD11_RS02690 PF02446 4-alpha-glucanotransferase AMD11_RS02695 PF00128 Alpha amylase, catalytic domain AMD11_RS02705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS02705 PF00128 Alpha amylase, catalytic domain AMD11_RS02710 PF13460 NAD(P)H-binding AMD11_RS02730 PF06903 VirK protein AMD11_RS02735 PF02321 Outer membrane efflux protein AMD11_RS02750 PF00873 AcrB/AcrD/AcrF family AMD11_RS02765 PF00271 Helicase conserved C-terminal domain AMD11_RS02765 PF00270 DEAD/DEAH box helicase AMD11_RS02770 PF00364 Biotin-requiring enzyme AMD11_RS02770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD11_RS02770 PF02817 e3 binding domain AMD11_RS02780 PF02779 Transketolase, pyrimidine binding domain AMD11_RS02780 PF02780 Transketolase, C-terminal domain AMD11_RS02785 PF00676 Dehydrogenase E1 component AMD11_RS02795 PF03301 Tryptophan 2,3-dioxygenase AMD11_RS02800 PF00854 POT family AMD11_RS02810 PF01047 MarR family AMD11_RS02815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS02820 PF04209 homogentisate 1,2-dioxygenase AMD11_RS02835 PF03334 Na+/H+ antiporter subunit AMD11_RS02840 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMD11_RS02850 PF00361 Proton-conducting membrane transporter AMD11_RS02855 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD11_RS02860 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMD11_RS02860 PF00361 Proton-conducting membrane transporter AMD11_RS02860 PF13244 Domain of unknown function (DUF4040) AMD11_RS02860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD11_RS02875 PF07504 Fungalysin/Thermolysin Propeptide Motif AMD11_RS02875 PF01483 Proprotein convertase P-domain AMD11_RS02875 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD11_RS02875 PF01447 Thermolysin metallopeptidase, catalytic domain AMD11_RS02880 PF00182 Chitinase class I AMD11_RS02900 PF01259 SAICAR synthetase AMD11_RS02905 PF05099 Tellurite resistance protein TerB AMD11_RS02905 PF00226 DnaJ domain AMD11_RS02915 PF00834 Ribulose-phosphate 3 epimerase family AMD11_RS02920 PF00583 Acetyltransferase (GNAT) family AMD11_RS02925 PF00781 Diacylglycerol kinase catalytic domain AMD11_RS02930 PF04715 Anthranilate synthase component I, N terminal region AMD11_RS02930 PF00425 chorismate binding enzyme AMD11_RS02940 PF00117 Glutamine amidotransferase class-I AMD11_RS02950 PF02885 Glycosyl transferase family, helical bundle domain AMD11_RS02950 PF00591 Glycosyl transferase family, a/b domain AMD11_RS02955 PF00218 Indole-3-glycerol phosphate synthase AMD11_RS02965 PF00325 Bacterial regulatory proteins, crp family AMD11_RS02965 PF00027 Cyclic nucleotide-binding domain AMD11_RS02970 PF02675 S-adenosylmethionine decarboxylase AMD11_RS02975 PF00893 Small Multidrug Resistance protein AMD11_RS02980 PF03232 Ubiquinone biosynthesis protein COQ7 AMD11_RS02985 PF00572 Ribosomal protein L13 AMD11_RS02990 PF00380 Ribosomal protein S9/S16 AMD11_RS03005 PF00293 NUDIX domain AMD11_RS03015 PF00210 Ferritin-like domain AMD11_RS03020 PF01627 Hpt domain AMD11_RS03020 PF00072 Response regulator receiver domain AMD11_RS03020 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS03020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS03020 PF00672 HAMP domain AMD11_RS03020 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD11_RS03025 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS03025 PF00072 Response regulator receiver domain AMD11_RS03045 PF01521 Iron-sulphur cluster biosynthesis AMD11_RS03065 PF00293 NUDIX domain AMD11_RS03065 PF09297 NADH pyrophosphatase zinc ribbon domain AMD11_RS03065 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMD11_RS03070 PF17113 Regulatory signalling modulator protein AmpE AMD11_RS03070 PF03186 CobD/Cbib protein AMD11_RS03090 PF07690 Major Facilitator Superfamily AMD11_RS03095 PF03466 LysR substrate binding domain AMD11_RS03095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS03100 PF07690 Major Facilitator Superfamily AMD11_RS03105 PF12805 FUSC-like inner membrane protein yccS AMD11_RS03115 PF02844 Phosphoribosylglycinamide synthetase, N domain AMD11_RS03115 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD11_RS03115 PF02843 Phosphoribosylglycinamide synthetase, C domain AMD11_RS03125 PF01808 AICARFT/IMPCHase bienzyme AMD11_RS03125 PF02142 MGS-like domain AMD11_RS03130 PF01066 CDP-alcohol phosphatidyltransferase AMD11_RS03135 PF12146 Serine aminopeptidase, S33 AMD11_RS03135 PF12147 Putative methyltransferase AMD11_RS03140 PF00782 Dual specificity phosphatase, catalytic domain AMD11_RS03170 PF02954 Bacterial regulatory protein, Fis family AMD11_RS03185 PF01381 Helix-turn-helix AMD11_RS03210 PF00289 Biotin carboxylase, N-terminal domain AMD11_RS03210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD11_RS03210 PF02785 Biotin carboxylase C-terminal domain AMD11_RS03220 PF00364 Biotin-requiring enzyme AMD11_RS03225 PF01220 Dehydroquinase class II AMD11_RS03230 PF02683 Cytochrome C biogenesis protein transmembrane region AMD11_RS03230 PF11412 Disulphide bond corrector protein DsbC AMD11_RS03235 PF03091 CutA1 divalent ion tolerance protein AMD11_RS03250 PF01852 START domain AMD11_RS03260 PF00106 short chain dehydrogenase AMD11_RS03265 PF04231 Endonuclease I AMD11_RS03270 PF00166 Chaperonin 10 Kd subunit AMD11_RS03275 PF00118 TCP-1/cpn60 chaperonin family AMD11_RS03285 PF00593 TonB dependent receptor AMD11_RS03285 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS03290 PF00793 DAHP synthetase I family AMD11_RS03305 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD11_RS03315 PF08335 GlnD PII-uridylyltransferase AMD11_RS03315 PF03710 Glutamate-ammonia ligase adenylyltransferase AMD11_RS03320 PF02592 Putative vitamin uptake transporter AMD11_RS03340 PF00881 Nitroreductase family AMD11_RS03345 PF04264 YceI-like domain AMD11_RS03370 PF16957 Malonate decarboxylase, alpha subunit, transporter AMD11_RS03375 PF06857 Malonate decarboxylase delta subunit (MdcD) AMD11_RS03380 PF01039 Carboxyl transferase domain AMD11_RS03390 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AMD11_RS03395 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AMD11_RS03400 PF00698 Acyl transferase domain AMD11_RS03410 PF07729 FCD domain AMD11_RS03410 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS03415 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS03445 PF07745 Glycosyl hydrolase family 53 AMD11_RS03450 PF17831 Pyruvate dehydrogenase E1 component middle domain AMD11_RS03450 PF00456 Transketolase, thiamine diphosphate binding domain AMD11_RS03455 PF13276 HTH-like domain AMD11_RS03455 PF00665 Integrase core domain AMD11_RS03455 PF13333 Integrase core domain AMD11_RS03465 PF00106 short chain dehydrogenase AMD11_RS03480 PF00106 short chain dehydrogenase AMD11_RS03490 PF13409 Glutathione S-transferase, N-terminal domain AMD11_RS03515 PF12823 Domain of unknown function (DUF3817) AMD11_RS03515 PF03176 MMPL family AMD11_RS03520 PF00326 Prolyl oligopeptidase family AMD11_RS03520 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD11_RS03525 PF07759 Protein of unknown function (DUF1615) AMD11_RS03535 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS03560 PF00892 EamA-like transporter family AMD11_RS03565 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD11_RS03575 PF00324 Amino acid permease AMD11_RS03585 PF01544 CorA-like Mg2+ transporter protein AMD11_RS03595 PF01204 Trehalase AMD11_RS03605 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD11_RS03605 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD11_RS03630 PF08448 PAS fold AMD11_RS03630 PF00563 EAL domain AMD11_RS03630 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS03630 PF08447 PAS fold AMD11_RS03635 PF02203 Tar ligand binding domain homologue AMD11_RS03635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS03635 PF00672 HAMP domain AMD11_RS03640 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS03640 PF00553 Cellulose binding domain AMD11_RS03645 PF00916 Sulfate permease family AMD11_RS03645 PF01740 STAS domain AMD11_RS03655 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS03670 PF13632 Glycosyl transferase family group 2 AMD11_RS03680 PF07694 5TMR of 5TMR-LYT AMD11_RS03680 PF06580 Histidine kinase AMD11_RS03685 PF04397 LytTr DNA-binding domain AMD11_RS03685 PF00072 Response regulator receiver domain AMD11_RS03690 PF03900 Porphobilinogen deaminase, C-terminal domain AMD11_RS03690 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMD11_RS03715 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD11_RS03715 PF00326 Prolyl oligopeptidase family AMD11_RS03725 PF00155 Aminotransferase class I and II AMD11_RS03730 PF00326 Prolyl oligopeptidase family AMD11_RS03730 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD11_RS03735 PF04304 Protein of unknown function (DUF454) AMD11_RS03745 PF01678 Diaminopimelate epimerase AMD11_RS03755 PF02899 Phage integrase, N-terminal SAM-like domain AMD11_RS03755 PF00589 Phage integrase family AMD11_RS03760 PF00227 Proteasome subunit AMD11_RS03765 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS03765 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS03765 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS03775 PF13673 Acetyltransferase (GNAT) domain AMD11_RS03780 PF13533 Biotin-lipoyl like AMD11_RS03790 PF01209 ubiE/COQ5 methyltransferase family AMD11_RS03795 PF00563 EAL domain AMD11_RS03795 PF03707 Bacterial signalling protein N terminal repeat AMD11_RS03795 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS03800 PF01433 Peptidase family M1 domain AMD11_RS03800 PF11838 ERAP1-like C-terminal domain AMD11_RS03820 PF13360 PQQ-like domain AMD11_RS03825 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD11_RS03840 PF00107 Zinc-binding dehydrogenase AMD11_RS03840 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS03850 PF01590 GAF domain AMD11_RS03850 PF02954 Bacterial regulatory protein, Fis family AMD11_RS03850 PF00158 Sigma-54 interaction domain AMD11_RS03855 PF00294 pfkB family carbohydrate kinase AMD11_RS03865 PF04085 rod shape-determining protein MreC AMD11_RS03875 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS03875 PF03717 Penicillin-binding Protein dimerisation domain AMD11_RS03880 PF01098 Cell cycle protein AMD11_RS03885 PF00295 Glycosyl hydrolases family 28 AMD11_RS03890 PF13406 Transglycosylase SLT domain AMD11_RS03895 PF03330 Lytic transglycolase AMD11_RS03895 PF05036 Sporulation related domain AMD11_RS03905 PF07943 Penicillin-binding protein 5, C-terminal domain AMD11_RS03905 PF00768 D-alanyl-D-alanine carboxypeptidase AMD11_RS03915 PF04359 Protein of unknown function (DUF493) AMD11_RS03920 PF03099 Biotin/lipoate A/B protein ligase family AMD11_RS03925 PF04055 Radical SAM superfamily AMD11_RS03925 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMD11_RS03930 PF17804 Tail specific protease N-terminal domain AMD11_RS03930 PF03572 Peptidase family S41 AMD11_RS03930 PF00595 PDZ domain AMD11_RS03930 PF11818 C-terminal domain of tail specific protease (DUF3340) AMD11_RS03940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS03940 PF03466 LysR substrate binding domain AMD11_RS03950 PF00293 NUDIX domain AMD11_RS03950 PF01467 Cytidylyltransferase-like AMD11_RS03985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD11_RS03985 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMD11_RS03990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD11_RS03990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD11_RS03995 PF04972 BON domain AMD11_RS04000 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS04000 PF08446 PAS fold AMD11_RS04000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04000 PF01590 GAF domain AMD11_RS04000 PF00360 Phytochrome region AMD11_RS04005 PF00072 Response regulator receiver domain AMD11_RS04010 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04015 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD11_RS04060 PF00263 Bacterial type II and III secretion system protein AMD11_RS04060 PF03958 Bacterial type II/III secretion system short domain AMD11_RS04065 PF00437 Type II/IV secretion system protein AMD11_RS04070 PF00482 Type II secretion system (T2SS), protein F AMD11_RS04075 PF07963 Prokaryotic N-terminal methylation motif AMD11_RS04075 PF08334 Type II secretion system (T2SS), protein G AMD11_RS04080 PF12019 Type II transport protein GspH AMD11_RS04080 PF07963 Prokaryotic N-terminal methylation motif AMD11_RS04085 PF02501 Type II secretion system (T2SS), protein I AMD11_RS04085 PF07963 Prokaryotic N-terminal methylation motif AMD11_RS04090 PF07963 Prokaryotic N-terminal methylation motif AMD11_RS04090 PF11612 Type II secretion system (T2SS), protein J AMD11_RS04095 PF03934 Type II secretion system (T2SS), protein K AMD11_RS04135 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS04135 PF07702 UTRA domain AMD11_RS04140 PF07690 Major Facilitator Superfamily AMD11_RS04145 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS04150 PF01380 SIS domain AMD11_RS04155 PF01979 Amidohydrolase family AMD11_RS04165 PF01966 HD domain AMD11_RS04165 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD11_RS04165 PF01743 Poly A polymerase head domain AMD11_RS04170 PF05199 GMC oxidoreductase AMD11_RS04170 PF00732 GMC oxidoreductase AMD11_RS04175 PF00171 Aldehyde dehydrogenase family AMD11_RS04180 PF02028 BCCT, betaine/carnitine/choline family transporter AMD11_RS04190 PF01323 DSBA-like thioredoxin domain AMD11_RS04200 PF00034 Cytochrome c AMD11_RS04205 PF01926 50S ribosome-binding GTPase AMD11_RS04210 PF00753 Metallo-beta-lactamase superfamily AMD11_RS04210 PF10996 Beta-Casp domain AMD11_RS04210 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMD11_RS04220 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMD11_RS04225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04225 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS04225 PF00672 HAMP domain AMD11_RS04230 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS04230 PF00072 Response regulator receiver domain AMD11_RS04245 PF02583 Metal-sensitive transcriptional repressor AMD11_RS04250 PF00107 Zinc-binding dehydrogenase AMD11_RS04250 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS04255 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD11_RS04260 PF00756 Putative esterase AMD11_RS04270 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS04270 PF00155 Aminotransferase class I and II AMD11_RS04275 PF02567 Phenazine biosynthesis-like protein AMD11_RS04280 PF00892 EamA-like transporter family AMD11_RS04290 PF12848 ABC transporter AMD11_RS04290 PF00005 ABC transporter AMD11_RS04300 PF00464 Serine hydroxymethyltransferase AMD11_RS04305 PF03477 ATP cone domain AMD11_RS04315 PF01872 RibD C-terminal domain AMD11_RS04315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD11_RS04325 PF00677 Lumazine binding domain AMD11_RS04330 PF00925 GTP cyclohydrolase II AMD11_RS04330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMD11_RS04335 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMD11_RS04340 PF01029 NusB family AMD11_RS04345 PF02769 AIR synthase related protein, C-terminal domain AMD11_RS04345 PF00586 AIR synthase related protein, N-terminal domain AMD11_RS04365 PF03814 Potassium-transporting ATPase A subunit AMD11_RS04375 PF02669 K+-transporting ATPase, c chain AMD11_RS04380 PF13492 GAF domain AMD11_RS04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04380 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS04380 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD11_RS04380 PF13493 Domain of unknown function (DUF4118) AMD11_RS04385 PF00072 Response regulator receiver domain AMD11_RS04385 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS04400 PF02913 FAD linked oxidases, C-terminal domain AMD11_RS04400 PF01565 FAD binding domain AMD11_RS04405 PF04307 LexA-binding, inner membrane-associated putative hydrolase AMD11_RS04410 PF02021 Uncharacterised protein family UPF0102 AMD11_RS04420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD11_RS04435 PF02381 MraZ protein, putative antitoxin-like AMD11_RS04440 PF01795 MraW methylase family AMD11_RS04445 PF04999 Cell division protein FtsL AMD11_RS04450 PF03717 Penicillin-binding Protein dimerisation domain AMD11_RS04450 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS04455 PF08245 Mur ligase middle domain AMD11_RS04455 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS04455 PF01225 Mur ligase family, catalytic domain AMD11_RS04460 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS04460 PF01225 Mur ligase family, catalytic domain AMD11_RS04460 PF08245 Mur ligase middle domain AMD11_RS04465 PF00953 Glycosyl transferase family 4 AMD11_RS04470 PF01098 Cell cycle protein AMD11_RS04475 PF03033 Glycosyltransferase family 28 N-terminal domain AMD11_RS04475 PF04101 Glycosyltransferase family 28 C-terminal domain AMD11_RS04480 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS04480 PF08245 Mur ligase middle domain AMD11_RS04480 PF01225 Mur ligase family, catalytic domain AMD11_RS04485 PF01820 D-ala D-ala ligase N-terminus AMD11_RS04485 PF07478 D-ala D-ala ligase C-terminus AMD11_RS04490 PF03799 Cell division protein FtsQ AMD11_RS04490 PF08478 POTRA domain, FtsQ-type AMD11_RS04495 PF02491 SHS2 domain inserted in FTSA AMD11_RS04500 PF12327 FtsZ family, C-terminal domain AMD11_RS04500 PF00091 Tubulin/FtsZ family, GTPase domain AMD11_RS04505 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMD11_RS04515 PF08525 Opacity-associated protein A N-terminal motif AMD11_RS04515 PF01476 LysM domain AMD11_RS04515 PF01551 Peptidase family M23 AMD11_RS04520 PF07516 SecA Wing and Scaffold domain AMD11_RS04520 PF01043 SecA preprotein cross-linking domain AMD11_RS04520 PF07517 SecA DEAD-like domain AMD11_RS04520 PF02810 SEC-C motif AMD11_RS04525 PF00293 NUDIX domain AMD11_RS04535 PF02219 Methylenetetrahydrofolate reductase AMD11_RS04545 PF08659 KR domain AMD11_RS04545 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS04545 PF00107 Zinc-binding dehydrogenase AMD11_RS04545 PF00698 Acyl transferase domain AMD11_RS04545 PF00550 Phosphopantetheine attachment site AMD11_RS04545 PF14765 Polyketide synthase dehydratase AMD11_RS04545 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD11_RS04545 PF16197 Ketoacyl-synthetase C-terminal extension AMD11_RS04545 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD11_RS04550 PF00082 Subtilase family AMD11_RS04550 PF09286 Pro-kumamolisin, activation domain AMD11_RS04560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD11_RS04565 PF00128 Alpha amylase, catalytic domain AMD11_RS04595 PF13649 Methyltransferase domain AMD11_RS04600 PF05221 S-adenosyl-L-homocysteine hydrolase AMD11_RS04600 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD11_RS04610 PF00311 Phosphoenolpyruvate carboxylase AMD11_RS04640 PF00328 Histidine phosphatase superfamily (branch 2) AMD11_RS04645 PF02772 S-adenosylmethionine synthetase, central domain AMD11_RS04645 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMD11_RS04645 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMD11_RS04655 PF13649 Methyltransferase domain AMD11_RS04660 PF01207 Dihydrouridine synthase (Dus) AMD11_RS04670 PF00294 pfkB family carbohydrate kinase AMD11_RS04675 PF07670 Nucleoside recognition AMD11_RS04675 PF01773 Na+ dependent nucleoside transporter N-terminus AMD11_RS04675 PF07662 Na+ dependent nucleoside transporter C-terminus AMD11_RS04680 PF00248 Aldo/keto reductase family AMD11_RS04690 PF00593 TonB dependent receptor AMD11_RS04690 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS04710 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS04715 PF00005 ABC transporter AMD11_RS04725 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMD11_RS04735 PF00005 ABC transporter AMD11_RS04740 PF13472 GDSL-like Lipase/Acylhydrolase family AMD11_RS04745 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS04745 PF00072 Response regulator receiver domain AMD11_RS04750 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04750 PF08521 Two-component sensor kinase N-terminal AMD11_RS04760 PF01219 Prokaryotic diacylglycerol kinase AMD11_RS04780 PF01790 Prolipoprotein diacylglyceryl transferase AMD11_RS04785 PF00303 Thymidylate synthase AMD11_RS04795 PF00186 Dihydrofolate reductase AMD11_RS04800 PF00158 Sigma-54 interaction domain AMD11_RS04805 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS04805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS04810 PF00005 ABC transporter AMD11_RS04815 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS04825 PF00296 Luciferase-like monooxygenase AMD11_RS04830 PF03358 NADPH-dependent FMN reductase AMD11_RS04850 PF00296 Luciferase-like monooxygenase AMD11_RS04855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD11_RS04860 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS04865 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS04865 PF12911 N-terminal TM domain of oligopeptide transport permease C AMD11_RS04870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD11_RS04870 PF00005 ABC transporter AMD11_RS04875 PF00149 Calcineurin-like phosphoesterase AMD11_RS04880 PF04379 ApaG domain AMD11_RS04885 PF00398 Ribosomal RNA adenine dimethylase AMD11_RS04890 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMD11_RS04895 PF09312 SurA N-terminal domain AMD11_RS04895 PF00639 PPIC-type PPIASE domain AMD11_RS04900 PF04453 LPS transport system D AMD11_RS04900 PF03968 OstA-like protein AMD11_RS04910 PF00850 Histone deacetylase domain AMD11_RS04915 PF01923 Cobalamin adenosyltransferase AMD11_RS04925 PF01494 FAD binding domain AMD11_RS04930 PF01494 FAD binding domain AMD11_RS04950 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS04950 PF07729 FCD domain AMD11_RS04955 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD11_RS04960 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD11_RS04960 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AMD11_RS04965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS04965 PF03466 LysR substrate binding domain AMD11_RS04970 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS04970 PF00501 AMP-binding enzyme AMD11_RS04975 PF00171 Aldehyde dehydrogenase family AMD11_RS04980 PF00378 Enoyl-CoA hydratase/isomerase AMD11_RS05000 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD11_RS05005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD11_RS05005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD11_RS05010 PF18125 RlmM ferredoxin-like domain AMD11_RS05010 PF01728 FtsJ-like methyltransferase AMD11_RS05035 PF00892 EamA-like transporter family AMD11_RS05045 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD11_RS05045 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMD11_RS05060 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS05060 PF00072 Response regulator receiver domain AMD11_RS05065 PF00072 Response regulator receiver domain AMD11_RS05065 PF00672 HAMP domain AMD11_RS05065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS05065 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS05065 PF01627 Hpt domain AMD11_RS05065 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD11_RS05070 PF00072 Response regulator receiver domain AMD11_RS05070 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS05080 PF01625 Peptide methionine sulfoxide reductase AMD11_RS05090 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMD11_RS05095 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD11_RS05095 PF14760 Rnk N-terminus AMD11_RS05100 PF03466 LysR substrate binding domain AMD11_RS05100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS05105 PF13192 Thioredoxin domain AMD11_RS05105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS05110 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD11_RS05110 PF00578 AhpC/TSA family AMD11_RS05115 PF17827 PrmC N-terminal domain AMD11_RS05115 PF05175 Methyltransferase small domain AMD11_RS05120 PF00561 alpha/beta hydrolase fold AMD11_RS05130 PF00293 NUDIX domain AMD11_RS05135 PF01612 3'-5' exonuclease AMD11_RS05135 PF00476 DNA polymerase family A AMD11_RS05135 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD11_RS05135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD11_RS05165 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMD11_RS05165 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMD11_RS05165 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD11_RS05190 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD11_RS05195 PF02233 NAD(P) transhydrogenase beta subunit AMD11_RS05210 PF01063 Amino-transferase class IV AMD11_RS05215 PF04151 Bacterial pre-peptidase C-terminal domain AMD11_RS05215 PF00082 Subtilase family AMD11_RS05220 PF00082 Subtilase family AMD11_RS05220 PF04151 Bacterial pre-peptidase C-terminal domain AMD11_RS05225 PF04151 Bacterial pre-peptidase C-terminal domain AMD11_RS05225 PF00082 Subtilase family AMD11_RS05230 PF04073 Aminoacyl-tRNA editing domain AMD11_RS05250 PF03358 NADPH-dependent FMN reductase AMD11_RS05255 PF03631 Virulence factor BrkB AMD11_RS05260 PF08534 Redoxin AMD11_RS05265 PF00708 Acylphosphatase AMD11_RS05275 PF03976 Polyphosphate kinase 2 (PPK2) AMD11_RS05280 PF00994 Probable molybdopterin binding domain AMD11_RS05290 PF00472 RF-1 domain AMD11_RS05290 PF03462 PCRF domain AMD11_RS05295 PF01488 Shikimate / quinate 5-dehydrogenase AMD11_RS05295 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMD11_RS05295 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMD11_RS05305 PF03550 Outer membrane lipoprotein LolB AMD11_RS05310 PF00288 GHMP kinases N terminal domain AMD11_RS05310 PF08544 GHMP kinases C terminal AMD11_RS05320 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD11_RS05320 PF14572 Phosphoribosyl synthetase-associated domain AMD11_RS05325 PF01386 Ribosomal L25p family AMD11_RS05325 PF14693 Ribosomal protein TL5, C-terminal domain AMD11_RS05330 PF01195 Peptidyl-tRNA hydrolase AMD11_RS05335 PF01926 50S ribosome-binding GTPase AMD11_RS05335 PF06071 Protein of unknown function (DUF933) AMD11_RS05355 PF03143 Elongation factor Tu C-terminal domain AMD11_RS05355 PF00009 Elongation factor Tu GTP binding domain AMD11_RS05355 PF03144 Elongation factor Tu domain 2 AMD11_RS05365 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMD11_RS05370 PF02357 Transcription termination factor nusG AMD11_RS05370 PF00467 KOW motif AMD11_RS05375 PF00298 Ribosomal protein L11, RNA binding domain AMD11_RS05375 PF03946 Ribosomal protein L11, N-terminal domain AMD11_RS05380 PF00687 Ribosomal protein L1p/L10e family AMD11_RS05385 PF00466 Ribosomal protein L10 AMD11_RS05390 PF00542 Ribosomal protein L7/L12 C-terminal domain AMD11_RS05390 PF16320 Ribosomal protein L7/L12 dimerisation domain AMD11_RS05395 PF04560 RNA polymerase Rpb2, domain 7 AMD11_RS05395 PF00562 RNA polymerase Rpb2, domain 6 AMD11_RS05395 PF04563 RNA polymerase beta subunit AMD11_RS05395 PF04565 RNA polymerase Rpb2, domain 3 AMD11_RS05395 PF04561 RNA polymerase Rpb2, domain 2 AMD11_RS05395 PF10385 RNA polymerase beta subunit external 1 domain AMD11_RS05400 PF00623 RNA polymerase Rpb1, domain 2 AMD11_RS05400 PF05000 RNA polymerase Rpb1, domain 4 AMD11_RS05400 PF04998 RNA polymerase Rpb1, domain 5 AMD11_RS05400 PF04983 RNA polymerase Rpb1, domain 3 AMD11_RS05400 PF04997 RNA polymerase Rpb1, domain 1 AMD11_RS05405 PF00164 Ribosomal protein S12/S23 AMD11_RS05410 PF00177 Ribosomal protein S7p/S5e AMD11_RS05415 PF00679 Elongation factor G C-terminus AMD11_RS05415 PF14492 Elongation Factor G, domain II AMD11_RS05415 PF03764 Elongation factor G, domain IV AMD11_RS05415 PF00009 Elongation factor Tu GTP binding domain AMD11_RS05415 PF03144 Elongation factor Tu domain 2 AMD11_RS05420 PF00009 Elongation factor Tu GTP binding domain AMD11_RS05420 PF03144 Elongation factor Tu domain 2 AMD11_RS05420 PF03143 Elongation factor Tu C-terminal domain AMD11_RS05425 PF00338 Ribosomal protein S10p/S20e AMD11_RS05430 PF00297 Ribosomal protein L3 AMD11_RS05435 PF00573 Ribosomal protein L4/L1 family AMD11_RS05440 PF00276 Ribosomal protein L23 AMD11_RS05445 PF03947 Ribosomal Proteins L2, C-terminal domain AMD11_RS05445 PF00181 Ribosomal Proteins L2, RNA binding domain AMD11_RS05450 PF00203 Ribosomal protein S19 AMD11_RS05455 PF00237 Ribosomal protein L22p/L17e AMD11_RS05460 PF07650 KH domain AMD11_RS05460 PF00189 Ribosomal protein S3, C-terminal domain AMD11_RS05465 PF00252 Ribosomal protein L16p/L10e AMD11_RS05470 PF00831 Ribosomal L29 protein AMD11_RS05475 PF00366 Ribosomal protein S17 AMD11_RS05480 PF00238 Ribosomal protein L14p/L23e AMD11_RS05485 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMD11_RS05485 PF00467 KOW motif AMD11_RS05490 PF00673 ribosomal L5P family C-terminus AMD11_RS05490 PF00281 Ribosomal protein L5 AMD11_RS05495 PF00253 Ribosomal protein S14p/S29e AMD11_RS05500 PF00410 Ribosomal protein S8 AMD11_RS05505 PF00347 Ribosomal protein L6 AMD11_RS05510 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMD11_RS05515 PF00333 Ribosomal protein S5, N-terminal domain AMD11_RS05515 PF03719 Ribosomal protein S5, C-terminal domain AMD11_RS05520 PF00327 Ribosomal protein L30p/L7e AMD11_RS05525 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMD11_RS05530 PF00344 SecY translocase AMD11_RS05535 PF00416 Ribosomal protein S13/S18 AMD11_RS05540 PF00411 Ribosomal protein S11 AMD11_RS05545 PF00163 Ribosomal protein S4/S9 N-terminal domain AMD11_RS05545 PF01479 S4 domain AMD11_RS05550 PF01000 RNA polymerase Rpb3/RpoA insert domain AMD11_RS05550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMD11_RS05550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMD11_RS05555 PF01196 Ribosomal protein L17 AMD11_RS05560 PF02600 Disulfide bond formation protein DsbB AMD11_RS05575 PF01474 Class-II DAHP synthetase family AMD11_RS05585 PF01425 Amidase AMD11_RS05595 PF00009 Elongation factor Tu GTP binding domain AMD11_RS05595 PF03144 Elongation factor Tu domain 2 AMD11_RS05595 PF00679 Elongation factor G C-terminus AMD11_RS05600 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD11_RS05605 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD11_RS05605 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD11_RS05610 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS05610 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS05620 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD11_RS05620 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS05625 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS05625 PF00107 Zinc-binding dehydrogenase AMD11_RS05630 PF05736 OprF membrane domain AMD11_RS05630 PF00691 OmpA family AMD11_RS05640 PF00849 RNA pseudouridylate synthase AMD11_RS05650 PF00155 Aminotransferase class I and II AMD11_RS05660 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS05665 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS05670 PF17850 CysA C-terminal regulatory domain AMD11_RS05670 PF12857 TOBE-like domain AMD11_RS05670 PF00005 ABC transporter AMD11_RS05680 PF00107 Zinc-binding dehydrogenase AMD11_RS05680 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS05695 PF04185 Phosphoesterase family AMD11_RS05695 PF05506 Domain of unknown function (DUF756) AMD11_RS05700 PF10459 Peptidase S46 AMD11_RS05705 PF10459 Peptidase S46 AMD11_RS05710 PF00300 Histidine phosphatase superfamily (branch 1) AMD11_RS05715 PF08245 Mur ligase middle domain AMD11_RS05715 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS05730 PF00156 Phosphoribosyl transferase domain AMD11_RS05735 PF04305 Protein of unknown function (DUF455) AMD11_RS05755 PF00149 Calcineurin-like phosphoesterase AMD11_RS05760 PF01569 PAP2 superfamily AMD11_RS05765 PF13439 Glycosyltransferase Family 4 AMD11_RS05765 PF00534 Glycosyl transferases group 1 AMD11_RS05770 PF02541 Ppx/GppA phosphatase family AMD11_RS05775 PF13089 Polyphosphate kinase N-terminal domain AMD11_RS05775 PF02503 Polyphosphate kinase middle domain AMD11_RS05775 PF13090 Polyphosphate kinase C-terminal domain 2 AMD11_RS05775 PF17941 Polyphosphate kinase C-terminal domain 1 AMD11_RS05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS05780 PF11808 Phosphate regulon sensor protein PhoR AMD11_RS05780 PF00989 PAS fold AMD11_RS05780 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS05785 PF00072 Response regulator receiver domain AMD11_RS05785 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS05790 PF13181 Tetratricopeptide repeat AMD11_RS05790 PF01435 Peptidase family M48 AMD11_RS05795 PF00462 Glutaredoxin AMD11_RS05805 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD11_RS05935 PF13276 HTH-like domain AMD11_RS05935 PF00665 Integrase core domain AMD11_RS05935 PF13333 Integrase core domain AMD11_RS05950 PF00989 PAS fold AMD11_RS05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS05950 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS05960 PF05697 Bacterial trigger factor protein (TF) AMD11_RS05960 PF05698 Bacterial trigger factor protein (TF) C-terminus AMD11_RS05965 PF00574 Clp protease AMD11_RS05970 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS05970 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS05970 PF06689 ClpX C4-type zinc finger AMD11_RS05975 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS05975 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMD11_RS05975 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD11_RS05980 PF00216 Bacterial DNA-binding protein AMD11_RS06005 PF05257 CHAP domain AMD11_RS06005 PF01476 LysM domain AMD11_RS06010 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD11_RS06010 PF00753 Metallo-beta-lactamase superfamily AMD11_RS06020 PF00075 RNase H AMD11_RS06025 PF00929 Exonuclease AMD11_RS06045 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMD11_RS06055 PF12706 Beta-lactamase superfamily domain AMD11_RS06055 PF00753 Metallo-beta-lactamase superfamily AMD11_RS06060 PF06463 Molybdenum Cofactor Synthesis C AMD11_RS06060 PF04055 Radical SAM superfamily AMD11_RS06070 PF01967 MoaC family AMD11_RS06075 PF02597 ThiS family AMD11_RS06080 PF02391 MoaE protein AMD11_RS06130 PF12169 DNA polymerase III subunits gamma and tau domain III AMD11_RS06130 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMD11_RS06130 PF12170 DNA polymerase III tau subunit V interacting with alpha AMD11_RS06135 PF02575 YbaB/EbfC DNA-binding family AMD11_RS06140 PF02132 RecR protein AMD11_RS06140 PF13662 Toprim domain AMD11_RS06145 PF01230 HIT domain AMD11_RS06155 PF13559 Domain of unknown function (DUF4129) AMD11_RS06155 PF11992 Domain of unknown function (DUF3488) AMD11_RS06155 PF01841 Transglutaminase-like superfamily AMD11_RS06165 PF17863 AAA lid domain AMD11_RS06165 PF07726 ATPase family associated with various cellular activities (AAA) AMD11_RS06185 PF02545 Maf-like protein AMD11_RS06190 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMD11_RS06195 PF01783 Ribosomal L32p protein family AMD11_RS06200 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD11_RS06200 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD11_RS06210 PF00698 Acyl transferase domain AMD11_RS06220 PF00550 Phosphopantetheine attachment site AMD11_RS06225 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD11_RS06225 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD11_RS06230 PF04715 Anthranilate synthase component I, N terminal region AMD11_RS06230 PF00425 chorismate binding enzyme AMD11_RS06235 PF02618 YceG-like family AMD11_RS06240 PF09115 DNA polymerase III, delta subunit, C terminal AMD11_RS06260 PF00158 Sigma-54 interaction domain AMD11_RS06260 PF06506 Propionate catabolism activator AMD11_RS06260 PF02954 Bacterial regulatory protein, Fis family AMD11_RS06270 PF00285 Citrate synthase, C-terminal domain AMD11_RS06275 PF00694 Aconitase C-terminal domain AMD11_RS06275 PF00330 Aconitase family (aconitate hydratase) AMD11_RS06280 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AMD11_RS06285 PF04303 PrpF protein AMD11_RS06290 PF00593 TonB dependent receptor AMD11_RS06290 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS06300 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AMD11_RS06300 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AMD11_RS06300 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AMD11_RS06300 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AMD11_RS06300 PF07703 Alpha-2-macroglobulin bait region domain AMD11_RS06300 PF17962 Bacterial macroglobulin domain 6 AMD11_RS06300 PF00207 Alpha-2-macroglobulin family AMD11_RS06300 PF01835 MG2 domain AMD11_RS06315 PF06832 Penicillin-Binding Protein C-terminus Family AMD11_RS06315 PF00912 Transglycosylase AMD11_RS06315 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS06325 PF08534 Redoxin AMD11_RS06335 PF00226 DnaJ domain AMD11_RS06335 PF01556 DnaJ C terminal domain AMD11_RS06340 PF00072 Response regulator receiver domain AMD11_RS06345 PF01145 SPFH domain / Band 7 family AMD11_RS06345 PF12221 Bacterial membrane protein N terminal AMD11_RS06350 PF01145 SPFH domain / Band 7 family AMD11_RS06360 PF00709 Adenylosuccinate synthetase AMD11_RS06365 PF01433 Peptidase family M1 domain AMD11_RS06365 PF11838 ERAP1-like C-terminal domain AMD11_RS06380 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS06445 PF13456 Reverse transcriptase-like AMD11_RS06445 PF00300 Histidine phosphatase superfamily (branch 1) AMD11_RS06450 PF01256 Carbohydrate kinase AMD11_RS06460 PF00723 Glycosyl hydrolases family 15 AMD11_RS06470 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD11_RS06470 PF07971 Glycosyl hydrolase family 92 AMD11_RS06490 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS06510 PF17755 UvrA DNA-binding domain AMD11_RS06515 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD11_RS06515 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD11_RS06520 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD11_RS06520 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD11_RS06525 PF01799 [2Fe-2S] binding domain AMD11_RS06525 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS06560 PF01726 LexA DNA binding domain AMD11_RS06560 PF00717 Peptidase S24-like AMD11_RS06575 PF02811 PHP domain AMD11_RS06575 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD11_RS06575 PF14579 Helix-hairpin-helix motif AMD11_RS06575 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD11_RS06580 PF00326 Prolyl oligopeptidase family AMD11_RS06590 PF03169 OPT oligopeptide transporter protein AMD11_RS06605 PF00326 Prolyl oligopeptidase family AMD11_RS06605 PF07676 WD40-like Beta Propeller Repeat AMD11_RS06605 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD11_RS06620 PF02311 AraC-like ligand binding domain AMD11_RS06620 PF12833 Helix-turn-helix domain AMD11_RS06635 PF06628 Catalase-related immune-responsive AMD11_RS06635 PF00199 Catalase AMD11_RS06635 PF18011 C-terminal domain found in long catalases AMD11_RS06640 PF00248 Aldo/keto reductase family AMD11_RS06645 PF00135 Carboxylesterase family AMD11_RS06650 PF02347 Glycine cleavage system P-protein AMD11_RS06655 PF07690 Major Facilitator Superfamily AMD11_RS06670 PF00884 Sulfatase AMD11_RS06670 PF08019 Phosphoethanolamine transferase EptA/EptB AMD11_RS06685 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS06685 PF00072 Response regulator receiver domain AMD11_RS06690 PF08521 Two-component sensor kinase N-terminal AMD11_RS06690 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06700 PF03776 Septum formation topological specificity factor MinE AMD11_RS06705 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD11_RS06710 PF05209 Septum formation inhibitor MinC, N-terminal domain AMD11_RS06710 PF03775 Septum formation inhibitor MinC, C-terminal domain AMD11_RS06725 PF07730 Histidine kinase AMD11_RS06730 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS06730 PF00072 Response regulator receiver domain AMD11_RS06745 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD11_RS06770 PF02222 ATP-grasp domain AMD11_RS06780 PF04376 Arginine-tRNA-protein transferase, N terminus AMD11_RS06780 PF04377 Arginine-tRNA-protein transferase, C terminus AMD11_RS06805 PF00378 Enoyl-CoA hydratase/isomerase AMD11_RS06820 PF00005 ABC transporter AMD11_RS06820 PF17755 UvrA DNA-binding domain AMD11_RS06820 PF17760 UvrA interaction domain AMD11_RS06825 PF00829 Ribosomal prokaryotic L21 protein AMD11_RS06830 PF01016 Ribosomal L27 protein AMD11_RS06835 PF01018 GTP1/OBG AMD11_RS06835 PF01926 50S ribosome-binding GTPase AMD11_RS06840 PF01649 Ribosomal protein S20 AMD11_RS06845 PF03023 Lipid II flippase MurJ AMD11_RS06850 PF01687 Riboflavin kinase AMD11_RS06850 PF06574 FAD synthetase AMD11_RS06855 PF06827 Zinc finger found in FPG and IleRS AMD11_RS06855 PF08264 Anticodon-binding domain of tRNA AMD11_RS06855 PF00133 tRNA synthetases class I (I, L, M and V) AMD11_RS06860 PF01252 Signal peptidase (SPase) II AMD11_RS06865 PF02401 LytB protein AMD11_RS06875 PF06481 COX Aromatic Rich Motif AMD11_RS06875 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD11_RS06880 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD11_RS06885 PF00510 Cytochrome c oxidase subunit III AMD11_RS06890 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMD11_RS06900 PF18073 Rubredoxin metal binding domain AMD11_RS06905 PF05656 Protein of unknown function (DUF805) AMD11_RS06915 PF12833 Helix-turn-helix domain AMD11_RS06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06920 PF00183 Hsp90 protein AMD11_RS06930 PF08678 Rsbr N terminal AMD11_RS06930 PF01740 STAS domain AMD11_RS06935 PF01740 STAS domain AMD11_RS06940 PF13581 Histidine kinase-like ATPase domain AMD11_RS06950 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06950 PF00072 Response regulator receiver domain AMD11_RS06950 PF00672 HAMP domain AMD11_RS06950 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD11_RS06950 PF01627 Hpt domain AMD11_RS06950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06955 PF13188 PAS domain AMD11_RS06955 PF00072 Response regulator receiver domain AMD11_RS06955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06955 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06955 PF08448 PAS fold AMD11_RS06960 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD11_RS06960 PF04616 Glycosyl hydrolases family 43 AMD11_RS06965 PF00593 TonB dependent receptor AMD11_RS06965 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS06970 PF00085 Thioredoxin AMD11_RS06975 PF07237 Protein of unknown function (DUF1428) AMD11_RS06980 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD11_RS06980 PF13492 GAF domain AMD11_RS06980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06980 PF13493 Domain of unknown function (DUF4118) AMD11_RS06980 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06985 PF01339 CheB methylesterase AMD11_RS06990 PF01739 CheR methyltransferase, SAM binding domain AMD11_RS06990 PF03705 CheR methyltransferase, all-alpha domain AMD11_RS06995 PF00672 HAMP domain AMD11_RS06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06995 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06995 PF01627 Hpt domain AMD11_RS06995 PF00072 Response regulator receiver domain AMD11_RS06995 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD11_RS07000 PF00072 Response regulator receiver domain AMD11_RS07000 PF13426 PAS domain AMD11_RS07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS07005 PF00072 Response regulator receiver domain AMD11_RS07010 PF00722 Glycosyl hydrolases family 16 AMD11_RS07015 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMD11_RS07025 PF01263 Aldose 1-epimerase AMD11_RS07030 PF01578 Cytochrome C assembly protein AMD11_RS07035 PF02881 SRP54-type protein, helical bundle domain AMD11_RS07035 PF00448 SRP54-type protein, GTPase domain AMD11_RS07035 PF02978 Signal peptide binding domain AMD11_RS07040 PF03060 Nitronate monooxygenase AMD11_RS07045 PF01063 Amino-transferase class IV AMD11_RS07050 PF00886 Ribosomal protein S16 AMD11_RS07055 PF01782 RimM N-terminal domain AMD11_RS07055 PF05239 PRC-barrel domain AMD11_RS07060 PF01746 tRNA (Guanine-1)-methyltransferase AMD11_RS07065 PF01245 Ribosomal protein L19 AMD11_RS07090 PF01479 S4 domain AMD11_RS07095 PF00141 Peroxidase AMD11_RS07105 PF00488 MutS domain V AMD11_RS07105 PF05192 MutS domain III AMD11_RS07105 PF05188 MutS domain II AMD11_RS07105 PF01624 MutS domain I AMD11_RS07105 PF05190 MutS family domain IV AMD11_RS07115 PF03527 RHS protein AMD11_RS07115 PF05593 RHS Repeat AMD11_RS07135 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD11_RS07135 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD11_RS07135 PF00703 Glycosyl hydrolases family 2 AMD11_RS07135 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD11_RS07135 PF16355 Domain of unknown function (DUF4982) AMD11_RS07140 PF07745 Glycosyl hydrolase family 53 AMD11_RS07150 PF09856 Predicted transcriptional regulator (DUF2083) AMD11_RS07150 PF01381 Helix-turn-helix AMD11_RS07150 PF06114 IrrE N-terminal-like domain AMD11_RS07155 PF00171 Aldehyde dehydrogenase family AMD11_RS07160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS07160 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS07160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS07165 PF00378 Enoyl-CoA hydratase/isomerase AMD11_RS07170 PF00378 Enoyl-CoA hydratase/isomerase AMD11_RS07170 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD11_RS07170 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD11_RS07175 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD11_RS07175 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD11_RS07180 PF01545 Cation efflux family AMD11_RS07185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD11_RS07185 PF00378 Enoyl-CoA hydratase/isomerase AMD11_RS07185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD11_RS07190 PF08281 Sigma-70, region 4 AMD11_RS07190 PF04542 Sigma-70 region 2 AMD11_RS07200 PF13180 PDZ domain AMD11_RS07205 PF00009 Elongation factor Tu GTP binding domain AMD11_RS07205 PF00679 Elongation factor G C-terminus AMD11_RS07205 PF03144 Elongation factor Tu domain 2 AMD11_RS07205 PF06421 GTP-binding protein LepA C-terminus AMD11_RS07210 PF10502 Signal peptidase, peptidase S26 AMD11_RS07220 PF00035 Double-stranded RNA binding motif AMD11_RS07220 PF14622 Ribonuclease-III-like AMD11_RS07225 PF01926 50S ribosome-binding GTPase AMD11_RS07225 PF07650 KH domain AMD11_RS07230 PF11967 Recombination protein O N terminal AMD11_RS07230 PF02565 Recombination protein O C terminal AMD11_RS07240 PF05958 tRNA (Uracil-5-)-methyltransferase AMD11_RS07245 PF01928 CYTH domain AMD11_RS07250 PF01323 DSBA-like thioredoxin domain AMD11_RS07255 PF01593 Flavin containing amine oxidoreductase AMD11_RS07260 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMD11_RS07265 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS07270 PF00156 Phosphoribosyl transferase domain AMD11_RS07275 PF01048 Phosphorylase superfamily AMD11_RS07280 PF00313 'Cold-shock' DNA-binding domain AMD11_RS07285 PF01494 FAD binding domain AMD11_RS07295 PF08494 DEAD/H associated AMD11_RS07295 PF00270 DEAD/DEAH box helicase AMD11_RS07295 PF00271 Helicase conserved C-terminal domain AMD11_RS07300 PF01068 ATP dependent DNA ligase domain AMD11_RS07300 PF04679 ATP dependent DNA ligase C terminal region AMD11_RS07300 PF04675 DNA ligase N terminus AMD11_RS07310 PF04679 ATP dependent DNA ligase C terminal region AMD11_RS07310 PF01068 ATP dependent DNA ligase domain AMD11_RS07310 PF04675 DNA ligase N terminus AMD11_RS07325 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS07325 PF00072 Response regulator receiver domain AMD11_RS07340 PF02803 Thiolase, C-terminal domain AMD11_RS07340 PF00108 Thiolase, N-terminal domain AMD11_RS07345 PF00082 Subtilase family AMD11_RS07345 PF12951 Passenger-associated-transport-repeat AMD11_RS07345 PF03797 Autotransporter beta-domain AMD11_RS07350 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD11_RS07350 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMD11_RS07360 PF01863 Protein of unknown function DUF45 AMD11_RS07365 PF07043 Protein of unknown function (DUF1328) AMD11_RS07375 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD11_RS07400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS07410 PF08274 PhnA Zinc-Ribbon AMD11_RS07410 PF03831 PhnA domain AMD11_RS07415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD11_RS07420 PF07690 Major Facilitator Superfamily AMD11_RS07455 PF03706 Lysylphosphatidylglycerol synthase TM region AMD11_RS07455 PF09924 Uncharacterised conserved protein (DUF2156) AMD11_RS07465 PF01042 Endoribonuclease L-PSP AMD11_RS07510 PF04542 Sigma-70 region 2 AMD11_RS07510 PF04545 Sigma-70, region 4 AMD11_RS07530 PF04060 Putative Fe-S cluster AMD11_RS07540 PF01588 Putative tRNA binding domain AMD11_RS07540 PF09334 tRNA synthetases class I (M) AMD11_RS07555 PF00005 ABC transporter AMD11_RS07555 PF13732 Domain of unknown function (DUF4162) AMD11_RS07560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS07565 PF00324 Amino acid permease AMD11_RS07570 PF02574 Homocysteine S-methyltransferase AMD11_RS07580 PF02592 Putative vitamin uptake transporter AMD11_RS07600 PF03551 Transcriptional regulator PadR-like family AMD11_RS07620 PF03653 Uncharacterised protein family (UPF0093) AMD11_RS07635 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMD11_RS07640 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD11_RS07640 PF01336 OB-fold nucleic acid binding domain AMD11_RS07640 PF02811 PHP domain AMD11_RS07640 PF14579 Helix-hairpin-helix motif AMD11_RS07640 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD11_RS07645 PF01351 Ribonuclease HII AMD11_RS07650 PF02684 Lipid-A-disaccharide synthetase AMD11_RS07655 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMD11_RS07655 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS07660 PF07977 FabA-like domain AMD11_RS07665 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS07665 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMD11_RS07675 PF07244 Surface antigen variable number repeat AMD11_RS07675 PF01103 Surface antigen AMD11_RS07680 PF02163 Peptidase family M50 AMD11_RS07680 PF17820 PDZ domain AMD11_RS07685 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMD11_RS07685 PF13288 DXP reductoisomerase C-terminal domain AMD11_RS07685 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMD11_RS07695 PF01255 Putative undecaprenyl diphosphate synthase AMD11_RS07700 PF01765 Ribosome recycling factor AMD11_RS07705 PF00696 Amino acid kinase family AMD11_RS07710 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS07710 PF00072 Response regulator receiver domain AMD11_RS07715 PF00889 Elongation factor TS AMD11_RS07720 PF00318 Ribosomal protein S2 AMD11_RS07755 PF00557 Metallopeptidase family M24 AMD11_RS07760 PF01909 Nucleotidyltransferase domain AMD11_RS07760 PF01966 HD domain AMD11_RS07760 PF08335 GlnD PII-uridylyltransferase AMD11_RS07765 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMD11_RS07765 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS07765 PF14602 Hexapeptide repeat of succinyl-transferase AMD11_RS07770 PF03960 ArsC family AMD11_RS07775 PF07687 Peptidase dimerisation domain AMD11_RS07775 PF01546 Peptidase family M20/M25/M40 AMD11_RS07780 PF00733 Asparagine synthase AMD11_RS07780 PF13537 Glutamine amidotransferase domain AMD11_RS07790 PF00593 TonB dependent receptor AMD11_RS07790 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS07805 PF00210 Ferritin-like domain AMD11_RS07810 PF05724 Thiopurine S-methyltransferase (TPMT) AMD11_RS07820 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD11_RS07820 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD11_RS07835 PF02321 Outer membrane efflux protein AMD11_RS07840 PF00529 HlyD membrane-fusion protein of T1SS AMD11_RS07840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS07845 PF07690 Major Facilitator Superfamily AMD11_RS07855 PF14310 Fibronectin type III-like domain AMD11_RS07855 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS07855 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS07865 PF00854 POT family AMD11_RS07890 PF12802 MarR family AMD11_RS07895 PF01432 Peptidase family M3 AMD11_RS07900 PF00255 Glutathione peroxidase AMD11_RS07905 PF00970 Oxidoreductase FAD-binding domain AMD11_RS07905 PF00175 Oxidoreductase NAD-binding domain AMD11_RS07910 PF00005 ABC transporter AMD11_RS07915 PF05681 Fumarate hydratase (Fumerase) AMD11_RS07915 PF05683 Fumarase C-terminus AMD11_RS07925 PF00484 Carbonic anhydrase AMD11_RS07930 PF02253 Phospholipase A1 AMD11_RS07940 PF00313 'Cold-shock' DNA-binding domain AMD11_RS07955 PF00899 ThiF family AMD11_RS07960 PF01026 TatD related DNase AMD11_RS07975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS07975 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS07975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS07985 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS07985 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS07995 PF13537 Glutamine amidotransferase domain AMD11_RS07995 PF00733 Asparagine synthase AMD11_RS08000 PF03358 NADPH-dependent FMN reductase AMD11_RS08005 PF03796 DnaB-like helicase C terminal domain AMD11_RS08005 PF00772 DnaB-like helicase N terminal domain AMD11_RS08010 PF00875 DNA photolyase AMD11_RS08010 PF03441 FAD binding domain of DNA photolyase AMD11_RS08015 PF05736 OprF membrane domain AMD11_RS08015 PF00691 OmpA family AMD11_RS08020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS08020 PF03466 LysR substrate binding domain AMD11_RS08035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS08035 PF00529 HlyD membrane-fusion protein of T1SS AMD11_RS08040 PF00873 AcrB/AcrD/AcrF family AMD11_RS08045 PF00106 short chain dehydrogenase AMD11_RS08050 PF02321 Outer membrane efflux protein AMD11_RS08055 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS08065 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS08130 PF01527 Transposase AMD11_RS08165 PF00082 Subtilase family AMD11_RS08170 PF01668 SmpB protein AMD11_RS08175 PF03364 Polyketide cyclase / dehydrase and lipid transport AMD11_RS08180 PF03658 RnfH family Ubiquitin AMD11_RS08185 PF04355 SmpA / OmlA family AMD11_RS08190 PF01475 Ferric uptake regulator family AMD11_RS08195 PF02463 RecF/RecN/SMC N terminal domain AMD11_RS08200 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMD11_RS08200 PF01628 HrcA protein C terminal domain AMD11_RS08205 PF01025 GrpE AMD11_RS08210 PF00012 Hsp70 protein AMD11_RS08215 PF01556 DnaJ C terminal domain AMD11_RS08215 PF00684 DnaJ central domain AMD11_RS08215 PF00226 DnaJ domain AMD11_RS08220 PF08543 Phosphomethylpyrimidine kinase AMD11_RS08245 PF00005 ABC transporter AMD11_RS08245 PF03412 Peptidase C39 family AMD11_RS08245 PF00664 ABC transporter transmembrane region AMD11_RS08250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS08250 PF03466 LysR substrate binding domain AMD11_RS08255 PF00005 ABC transporter AMD11_RS08255 PF00664 ABC transporter transmembrane region AMD11_RS08260 PF01205 Uncharacterized protein family UPF0029 AMD11_RS08265 PF03641 Possible lysine decarboxylase AMD11_RS08270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD11_RS08270 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS08275 PF02817 e3 binding domain AMD11_RS08275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD11_RS08275 PF00364 Biotin-requiring enzyme AMD11_RS08280 PF00676 Dehydrogenase E1 component AMD11_RS08280 PF16078 2-oxoglutarate dehydrogenase N-terminus AMD11_RS08280 PF16870 2-oxoglutarate dehydrogenase C-terminal AMD11_RS08280 PF02779 Transketolase, pyrimidine binding domain AMD11_RS08290 PF08007 Cupin superfamily protein AMD11_RS08300 PF00206 Lyase AMD11_RS08300 PF08328 Adenylosuccinate lyase C-terminal AMD11_RS08310 PF01595 Cyclin M transmembrane N-terminal domain AMD11_RS08310 PF03471 Transporter associated domain AMD11_RS08310 PF00571 CBS domain AMD11_RS08315 PF10415 Fumarase C C-terminus AMD11_RS08315 PF00206 Lyase AMD11_RS08340 PF00005 ABC transporter AMD11_RS08345 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS08350 PF00255 Glutathione peroxidase AMD11_RS08355 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD11_RS08355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS08360 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD11_RS08360 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD11_RS08360 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD11_RS08365 PF04102 SlyX AMD11_RS08380 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS08385 PF07690 Major Facilitator Superfamily AMD11_RS08390 PF00294 pfkB family carbohydrate kinase AMD11_RS08400 PF02310 B12 binding domain AMD11_RS08400 PF00809 Pterin binding enzyme AMD11_RS08400 PF02574 Homocysteine S-methyltransferase AMD11_RS08400 PF02607 B12 binding domain AMD11_RS08400 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMD11_RS08405 PF00809 Pterin binding enzyme AMD11_RS08405 PF02574 Homocysteine S-methyltransferase AMD11_RS08410 PF01209 ubiE/COQ5 methyltransferase family AMD11_RS08415 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS08415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS08415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS08430 PF00773 RNB domain AMD11_RS08430 PF00575 S1 RNA binding domain AMD11_RS08430 PF08206 Ribonuclease B OB domain AMD11_RS08430 PF17876 Cold shock domain AMD11_RS08430 PF08461 Ribonuclease R winged-helix domain AMD11_RS08440 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD11_RS08440 PF00588 SpoU rRNA Methylase family AMD11_RS08445 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS08450 PF00929 Exonuclease AMD11_RS08460 PF01895 PhoU domain AMD11_RS08465 PF00005 ABC transporter AMD11_RS08470 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS08475 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS08480 PF12849 PBP superfamily domain AMD11_RS08485 PF12849 PBP superfamily domain AMD11_RS08500 PF00484 Carbonic anhydrase AMD11_RS08505 PF00916 Sulfate permease family AMD11_RS08505 PF01740 STAS domain AMD11_RS08510 PF00633 Helix-hairpin-helix motif AMD11_RS08510 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD11_RS08510 PF10576 Iron-sulfur binding domain of endonuclease III AMD11_RS08520 PF00378 Enoyl-CoA hydratase/isomerase AMD11_RS08525 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD11_RS08525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS08530 PF00293 NUDIX domain AMD11_RS08535 PF00581 Rhodanese-like domain AMD11_RS08565 PF16326 ABC transporter C-terminal domain AMD11_RS08565 PF12848 ABC transporter AMD11_RS08565 PF00005 ABC transporter AMD11_RS08570 PF10672 S-adenosylmethionine-dependent methyltransferase AMD11_RS08570 PF01170 Putative RNA methylase family UPF0020 AMD11_RS08570 PF02926 THUMP domain AMD11_RS08575 PF01513 ATP-NAD kinase AMD11_RS08600 PF00929 Exonuclease AMD11_RS08600 PF08411 Exonuclease C-terminal AMD11_RS08605 PF01494 FAD binding domain AMD11_RS08610 PF00266 Aminotransferase class-V AMD11_RS08620 PF06052 3-hydroxyanthranilic acid dioxygenase AMD11_RS08625 PF00484 Carbonic anhydrase AMD11_RS08670 PF00072 Response regulator receiver domain AMD11_RS08670 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS08685 PF04299 Putative FMN-binding domain AMD11_RS08705 PF01336 OB-fold nucleic acid binding domain AMD11_RS08705 PF00152 tRNA synthetases class II (D, K and N) AMD11_RS08710 PF01521 Iron-sulphur cluster biosynthesis AMD11_RS08715 PF01250 Ribosomal protein S6 AMD11_RS08720 PF01084 Ribosomal protein S18 AMD11_RS08725 PF01281 Ribosomal protein L9, N-terminal domain AMD11_RS08725 PF03948 Ribosomal protein L9, C-terminal domain AMD11_RS08730 PF02463 RecF/RecN/SMC N terminal domain AMD11_RS08735 PF04354 ZipA, C-terminal FtsZ-binding domain AMD11_RS08745 PF00155 Aminotransferase class I and II AMD11_RS08750 PF12826 Helix-hairpin-helix motif AMD11_RS08750 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMD11_RS08750 PF03120 NAD-dependent DNA ligase OB-fold domain AMD11_RS08750 PF01653 NAD-dependent DNA ligase adenylation domain AMD11_RS08750 PF00533 BRCA1 C Terminus (BRCT) domain AMD11_RS08755 PF00152 tRNA synthetases class II (D, K and N) AMD11_RS08765 PF01008 Initiation factor 2 subunit family AMD11_RS08770 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD11_RS08770 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD11_RS08785 PF17391 Urocanase N-terminal domain AMD11_RS08785 PF17392 Urocanase C-terminal domain AMD11_RS08785 PF01175 Urocanase Rossmann-like domain AMD11_RS08795 PF00221 Aromatic amino acid lyase AMD11_RS08800 PF07969 Amidohydrolase family AMD11_RS08815 PF07702 UTRA domain AMD11_RS08815 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS08845 PF01794 Ferric reductase like transmembrane component AMD11_RS08850 PF00174 Oxidoreductase molybdopterin binding domain AMD11_RS08855 PF00266 Aminotransferase class-V AMD11_RS08860 PF01842 ACT domain AMD11_RS08860 PF01817 Chorismate mutase type II AMD11_RS08860 PF00800 Prephenate dehydratase AMD11_RS08865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD11_RS08875 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS08880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD11_RS08880 PF02403 Seryl-tRNA synthetase N-terminal domain AMD11_RS08885 PF02525 Flavodoxin-like fold AMD11_RS08890 PF03466 LysR substrate binding domain AMD11_RS08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS08925 PF13276 HTH-like domain AMD11_RS08925 PF00665 Integrase core domain AMD11_RS08925 PF13333 Integrase core domain AMD11_RS08945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS08945 PF00672 HAMP domain AMD11_RS08945 PF02203 Tar ligand binding domain homologue AMD11_RS08950 PF01494 FAD binding domain AMD11_RS08970 PF00072 Response regulator receiver domain AMD11_RS08970 PF08448 PAS fold AMD11_RS08970 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS08970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS08970 PF13188 PAS domain AMD11_RS08975 PF00672 HAMP domain AMD11_RS08975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS08975 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS08975 PF01627 Hpt domain AMD11_RS08975 PF00072 Response regulator receiver domain AMD11_RS08975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD11_RS08980 PF06745 KaiC AMD11_RS08985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS08985 PF13426 PAS domain AMD11_RS08985 PF00072 Response regulator receiver domain AMD11_RS08995 PF03918 Cytochrome C biogenesis protein AMD11_RS09000 PF08534 Redoxin AMD11_RS09005 PF01578 Cytochrome C assembly protein AMD11_RS09005 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD11_RS09010 PF03100 CcmE AMD11_RS09020 PF01578 Cytochrome C assembly protein AMD11_RS09025 PF00082 Subtilase family AMD11_RS09035 PF04542 Sigma-70 region 2 AMD11_RS09035 PF08281 Sigma-70, region 4 AMD11_RS09050 PF00034 Cytochrome c AMD11_RS09065 PF05523 WxcM-like, C-terminal AMD11_RS09085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD11_RS09090 PF01943 Polysaccharide biosynthesis protein AMD11_RS09095 PF00535 Glycosyl transferase family 2 AMD11_RS09110 PF08241 Methyltransferase domain AMD11_RS09130 PF13579 Glycosyl transferase 4-like domain AMD11_RS09130 PF00534 Glycosyl transferases group 1 AMD11_RS09145 PF00005 ABC transporter AMD11_RS09155 PF07690 Major Facilitator Superfamily AMD11_RS09160 PF00296 Luciferase-like monooxygenase AMD11_RS09175 PF03471 Transporter associated domain AMD11_RS09175 PF01595 Cyclin M transmembrane N-terminal domain AMD11_RS09175 PF00571 CBS domain AMD11_RS09185 PF01384 Phosphate transporter family AMD11_RS09200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS09200 PF01751 Toprim domain AMD11_RS09200 PF00204 DNA gyrase B AMD11_RS09200 PF00986 DNA gyrase B subunit, carboxyl terminus AMD11_RS09210 PF06418 CTP synthase N-terminus AMD11_RS09210 PF00117 Glutamine amidotransferase class-I AMD11_RS09215 PF00793 DAHP synthetase I family AMD11_RS09225 PF03952 Enolase, N-terminal domain AMD11_RS09225 PF00113 Enolase, C-terminal TIM barrel domain AMD11_RS09230 PF04977 Septum formation initiator AMD11_RS09235 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMD11_RS09240 PF02542 YgbB family AMD11_RS09245 PF01142 tRNA pseudouridine synthase D (TruD) AMD11_RS09250 PF01713 Smr domain AMD11_RS09255 PF01975 Survival protein SurE AMD11_RS09265 PF09335 SNARE associated Golgi protein AMD11_RS09270 PF01476 LysM domain AMD11_RS09270 PF01551 Peptidase family M23 AMD11_RS09275 PF04430 Protein of unknown function (DUF498/DUF598) AMD11_RS09280 PF01985 CRS1 / YhbY (CRM) domain AMD11_RS09285 PF01728 FtsJ-like methyltransferase AMD11_RS09290 PF17862 AAA+ lid domain AMD11_RS09290 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS09290 PF06480 FtsH Extracellular AMD11_RS09290 PF01434 Peptidase family M41 AMD11_RS09295 PF00809 Pterin binding enzyme AMD11_RS09305 PF17209 Hfq protein AMD11_RS09310 PF13167 GTP-binding GTPase N-terminal AMD11_RS09310 PF01926 50S ribosome-binding GTPase AMD11_RS09310 PF16360 GTP-binding GTPase Middle Region AMD11_RS09315 PF02464 Competence-damaged protein AMD11_RS09320 PF03109 ABC1 family AMD11_RS09325 PF00717 Peptidase S24-like AMD11_RS09325 PF01726 LexA DNA binding domain AMD11_RS09330 PF00154 recA bacterial DNA recombination protein AMD11_RS09335 PF02631 RecX family AMD11_RS09340 PF02272 DHHA1 domain AMD11_RS09340 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD11_RS09340 PF01411 tRNA synthetases class II (A) AMD11_RS09345 PF02599 Global regulator protein family AMD11_RS09355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS09355 PF13426 PAS domain AMD11_RS09355 PF08447 PAS fold AMD11_RS09360 PF17954 Quercetinase C-terminal cupin domain AMD11_RS09360 PF02678 Pirin AMD11_RS09370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS09370 PF03466 LysR substrate binding domain AMD11_RS09395 PF02581 Thiamine monophosphate synthase AMD11_RS09395 PF08543 Phosphomethylpyrimidine kinase AMD11_RS09410 PF13638 PIN domain AMD11_RS09410 PF02562 PhoH-like protein AMD11_RS09415 PF00578 AhpC/TSA family AMD11_RS09430 PF00701 Dihydrodipicolinate synthetase family AMD11_RS09440 PF00037 4Fe-4S binding domain AMD11_RS09440 PF11953 Domain of unknown function (DUF3470) AMD11_RS09445 PF05035 2-keto-3-deoxy-galactonokinase AMD11_RS09450 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD11_RS09455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD11_RS09455 PF13378 Enolase C-terminal domain-like AMD11_RS09460 PF01081 KDPG and KHG aldolase AMD11_RS09470 PF03466 LysR substrate binding domain AMD11_RS09470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS09485 PF00942 Cellulose binding domain AMD11_RS09485 PF03442 Carbohydrate binding domain X2 AMD11_RS09500 PF17137 Domain of unknown function (DUF5110) AMD11_RS09500 PF16338 Domain of unknown function (DUF4968) AMD11_RS09500 PF01055 Glycosyl hydrolases family 31 AMD11_RS09510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD11_RS09510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD11_RS09520 PF00083 Sugar (and other) transporter AMD11_RS09530 PF01520 N-acetylmuramoyl-L-alanine amidase AMD11_RS09535 PF02649 Type I GTP cyclohydrolase folE2 AMD11_RS09545 PF12626 Polymerase A arginine-rich C-terminus AMD11_RS09545 PF01743 Poly A polymerase head domain AMD11_RS09545 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD11_RS09550 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD11_RS09555 PF02548 Ketopantoate hydroxymethyltransferase AMD11_RS09560 PF02569 Pantoate-beta-alanine ligase AMD11_RS09565 PF02261 Aspartate decarboxylase AMD11_RS09570 PF00342 Phosphoglucose isomerase AMD11_RS09590 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS09590 PF14310 Fibronectin type III-like domain AMD11_RS09590 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS09595 PF00474 Sodium:solute symporter family AMD11_RS09600 PF01590 GAF domain AMD11_RS09600 PF00563 EAL domain AMD11_RS09600 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS09600 PF00360 Phytochrome region AMD11_RS09605 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS09605 PF02013 Cellulose or protein binding domain AMD11_RS09610 PF00072 Response regulator receiver domain AMD11_RS09620 PF04551 GcpE protein AMD11_RS09625 PF01569 PAP2 superfamily AMD11_RS09630 PF07690 Major Facilitator Superfamily AMD11_RS09635 PF01177 Asp/Glu/Hydantoin racemase AMD11_RS09640 PF00892 EamA-like transporter family AMD11_RS09645 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMD11_RS09645 PF01565 FAD binding domain AMD11_RS09650 PF01180 Dihydroorotate dehydrogenase AMD11_RS09665 PF00171 Aldehyde dehydrogenase family AMD11_RS09680 PF00535 Glycosyl transferase family 2 AMD11_RS09685 PF14883 Hypothetical glycosyl hydrolase family 13 AMD11_RS09685 PF01522 Polysaccharide deacetylase AMD11_RS09695 PF08479 POTRA domain, ShlB-type AMD11_RS09695 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD11_RS09695 PF17287 POTRA domain AMD11_RS09700 PF05594 Haemagluttinin repeat AMD11_RS09700 PF04829 Pre-toxin domain with VENN motif AMD11_RS09700 PF13332 Hemagglutinin repeat AMD11_RS09705 PF04829 Pre-toxin domain with VENN motif AMD11_RS09705 PF13332 Hemagglutinin repeat AMD11_RS09705 PF05594 Haemagluttinin repeat AMD11_RS09710 PF05594 Haemagluttinin repeat AMD11_RS09710 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain AMD11_RS09710 PF05860 haemagglutination activity domain AMD11_RS09710 PF13018 Extended Signal Peptide of Type V secretion system AMD11_RS09710 PF13332 Hemagglutinin repeat AMD11_RS09720 PF01842 ACT domain AMD11_RS09720 PF03447 Homoserine dehydrogenase, NAD binding domain AMD11_RS09720 PF00742 Homoserine dehydrogenase AMD11_RS09720 PF13840 ACT domain AMD11_RS09720 PF00696 Amino acid kinase family AMD11_RS09725 PF08544 GHMP kinases C terminal AMD11_RS09725 PF00288 GHMP kinases N terminal domain AMD11_RS09735 PF14821 Threonine synthase N terminus AMD11_RS09735 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS09745 PF13545 Crp-like helix-turn-helix domain AMD11_RS09745 PF00027 Cyclic nucleotide-binding domain AMD11_RS09750 PF13393 Histidyl-tRNA synthetase AMD11_RS09750 PF03129 Anticodon binding domain AMD11_RS09760 PF08029 HisG, C-terminal domain AMD11_RS09760 PF01634 ATP phosphoribosyltransferase AMD11_RS09765 PF00815 Histidinol dehydrogenase AMD11_RS09770 PF00155 Aminotransferase class I and II AMD11_RS09775 PF00475 Imidazoleglycerol-phosphate dehydratase AMD11_RS09780 PF00117 Glutamine amidotransferase class-I AMD11_RS09785 PF00977 Histidine biosynthesis protein AMD11_RS09790 PF00977 Histidine biosynthesis protein AMD11_RS09795 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMD11_RS09795 PF01502 Phosphoribosyl-AMP cyclohydrolase AMD11_RS09815 PF03079 ARD/ARD' family AMD11_RS09820 PF00596 Class II Aldolase and Adducin N-terminal domain AMD11_RS09825 PF13520 Amino acid permease AMD11_RS09830 PF13520 Amino acid permease AMD11_RS09840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD11_RS09840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD11_RS09840 PF01842 ACT domain AMD11_RS09845 PF02913 FAD linked oxidases, C-terminal domain AMD11_RS09845 PF01565 FAD binding domain AMD11_RS09865 PF08207 Elongation factor P (EF-P) KOW-like domain AMD11_RS09865 PF09285 Elongation factor P, C-terminal AMD11_RS09865 PF01132 Elongation factor P (EF-P) OB domain AMD11_RS09870 PF00106 short chain dehydrogenase AMD11_RS09875 PF00682 HMGL-like AMD11_RS09885 PF00378 Enoyl-CoA hydratase/isomerase AMD11_RS09895 PF07670 Nucleoside recognition AMD11_RS09895 PF07664 Ferrous iron transport protein B C terminus AMD11_RS09895 PF02421 Ferrous iron transport protein B AMD11_RS09910 PF00155 Aminotransferase class I and II AMD11_RS09915 PF03473 MOSC domain AMD11_RS09915 PF03475 3-alpha domain AMD11_RS09920 PF05173 Dihydrodipicolinate reductase, C-terminus AMD11_RS09920 PF01113 Dihydrodipicolinate reductase, N-terminus AMD11_RS09925 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD11_RS09925 PF00117 Glutamine amidotransferase class-I AMD11_RS09935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD11_RS09935 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD11_RS09935 PF02142 MGS-like domain AMD11_RS09940 PF03449 Transcription elongation factor, N-terminal AMD11_RS09940 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD11_RS09950 PF02272 DHHA1 domain AMD11_RS09950 PF17768 RecJ OB domain AMD11_RS09950 PF01368 DHH family AMD11_RS09995 PF04397 LytTr DNA-binding domain AMD11_RS09995 PF00072 Response regulator receiver domain AMD11_RS10000 PF03462 PCRF domain AMD11_RS10000 PF00472 RF-1 domain AMD11_RS10005 PF01336 OB-fold nucleic acid binding domain AMD11_RS10005 PF00152 tRNA synthetases class II (D, K and N) AMD11_RS10010 PF00072 Response regulator receiver domain AMD11_RS10015 PF01627 Hpt domain AMD11_RS10015 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS10015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10015 PF00072 Response regulator receiver domain AMD11_RS10020 PF00378 Enoyl-CoA hydratase/isomerase AMD11_RS10025 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS10025 PF00501 AMP-binding enzyme AMD11_RS10035 PF00694 Aconitase C-terminal domain AMD11_RS10035 PF00330 Aconitase family (aconitate hydratase) AMD11_RS10050 PF00330 Aconitase family (aconitate hydratase) AMD11_RS10050 PF11791 Aconitate B N-terminal domain AMD11_RS10050 PF06434 Aconitate hydratase 2 N-terminus AMD11_RS10055 PF00561 alpha/beta hydrolase fold AMD11_RS10060 PF03707 Bacterial signalling protein N terminal repeat AMD11_RS10060 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS10060 PF00563 EAL domain AMD11_RS10065 PF01339 CheB methylesterase AMD11_RS10065 PF00072 Response regulator receiver domain AMD11_RS10070 PF03975 CheD chemotactic sensory transduction AMD11_RS10075 PF01739 CheR methyltransferase, SAM binding domain AMD11_RS10075 PF03705 CheR methyltransferase, all-alpha domain AMD11_RS10080 PF02203 Tar ligand binding domain homologue AMD11_RS10080 PF00672 HAMP domain AMD11_RS10080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10085 PF02203 Tar ligand binding domain homologue AMD11_RS10085 PF00672 HAMP domain AMD11_RS10085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10090 PF00672 HAMP domain AMD11_RS10090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10090 PF02203 Tar ligand binding domain homologue AMD11_RS10100 PF02203 Tar ligand binding domain homologue AMD11_RS10100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10100 PF00672 HAMP domain AMD11_RS10105 PF00672 HAMP domain AMD11_RS10105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10105 PF02203 Tar ligand binding domain homologue AMD11_RS10110 PF00672 HAMP domain AMD11_RS10110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10115 PF02203 Tar ligand binding domain homologue AMD11_RS10115 PF00672 HAMP domain AMD11_RS10115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10130 PF02203 Tar ligand binding domain homologue AMD11_RS10130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10130 PF00672 HAMP domain AMD11_RS10135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10135 PF08269 Cache domain AMD11_RS10135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10135 PF08269 Cache domain AMD11_RS10145 PF02203 Tar ligand binding domain homologue AMD11_RS10145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10145 PF00672 HAMP domain AMD11_RS10150 PF02895 Signal transducing histidine kinase, homodimeric domain AMD11_RS10150 PF01627 Hpt domain AMD11_RS10150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10150 PF09078 CheY binding AMD11_RS10150 PF01584 CheW-like domain AMD11_RS10155 PF00072 Response regulator receiver domain AMD11_RS10165 PF01584 CheW-like domain AMD11_RS10170 PF13614 AAA domain AMD11_RS10175 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD11_RS10175 PF00691 OmpA family AMD11_RS10180 PF01618 MotA/TolQ/ExbB proton channel family AMD11_RS10195 PF00069 Protein kinase domain AMD11_RS10195 PF03793 PASTA domain AMD11_RS10265 PF04055 Radical SAM superfamily AMD11_RS10265 PF13186 Iron-sulfur cluster-binding domain AMD11_RS10280 PF01584 CheW-like domain AMD11_RS10280 PF02895 Signal transducing histidine kinase, homodimeric domain AMD11_RS10280 PF00072 Response regulator receiver domain AMD11_RS10280 PF01627 Hpt domain AMD11_RS10280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10285 PF04344 Chemotaxis phosphatase, CheZ AMD11_RS10290 PF00072 Response regulator receiver domain AMD11_RS10295 PF04545 Sigma-70, region 4 AMD11_RS10295 PF04542 Sigma-70 region 2 AMD11_RS10295 PF04539 Sigma-70 region 3 AMD11_RS10300 PF10609 NUBPL iron-transfer P-loop NTPase AMD11_RS10305 PF00448 SRP54-type protein, GTPase domain AMD11_RS10310 PF00771 FHIPEP family AMD11_RS10315 PF01312 FlhB HrpN YscU SpaS Family AMD11_RS10320 PF03707 Bacterial signalling protein N terminal repeat AMD11_RS10320 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS10320 PF00563 EAL domain AMD11_RS10325 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS10335 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS10340 PF01311 Bacterial export proteins, family 1 AMD11_RS10345 PF01313 Bacterial export proteins, family 3 AMD11_RS10350 PF00813 FliP family AMD11_RS10355 PF04347 Flagellar biosynthesis protein, FliO AMD11_RS10360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD11_RS10365 PF02154 Flagellar motor switch protein FliM AMD11_RS10365 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD11_RS10385 PF18269 T3SS EscN ATPase C-terminal domain AMD11_RS10385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS10395 PF01706 FliG C-terminal domain AMD11_RS10395 PF14841 FliG middle domain AMD11_RS10395 PF14842 FliG N-terminal domain AMD11_RS10400 PF08345 Flagellar M-ring protein C-terminal AMD11_RS10400 PF01514 Secretory protein of YscJ/FliF family AMD11_RS10405 PF02049 Flagellar hook-basal body complex protein FliE AMD11_RS10410 PF00535 Glycosyl transferase family 2 AMD11_RS10410 PF00534 Glycosyl transferases group 1 AMD11_RS10445 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD11_RS10445 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD11_RS10455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD11_RS10460 PF06490 Flagellar regulatory protein FleQ AMD11_RS10460 PF00158 Sigma-54 interaction domain AMD11_RS10460 PF02954 Bacterial regulatory protein, Fis family AMD11_RS10465 PF01339 CheB methylesterase AMD11_RS10465 PF00072 Response regulator receiver domain AMD11_RS10470 PF04963 Sigma-54 factor, core binding domain AMD11_RS10470 PF04552 Sigma-54, DNA binding domain AMD11_RS10470 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD11_RS10475 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS10475 PF00072 Response regulator receiver domain AMD11_RS10490 PF02561 Flagellar protein FliS AMD11_RS10495 PF02465 Flagellar hook-associated protein 2 N-terminus AMD11_RS10495 PF07196 Flagellin hook IN motif AMD11_RS10495 PF07195 Flagellar hook-associated protein 2 C-terminus AMD11_RS10500 PF00669 Bacterial flagellin N-terminal helical region AMD11_RS10500 PF00700 Bacterial flagellin C-terminal helical region AMD11_RS10505 PF00700 Bacterial flagellin C-terminal helical region AMD11_RS10505 PF00669 Bacterial flagellin N-terminal helical region AMD11_RS10510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10510 PF07196 Flagellin hook IN motif AMD11_RS10515 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD11_RS10515 PF10135 Rod binding protein AMD11_RS10520 PF02119 Flagellar P-ring protein AMD11_RS10525 PF02107 Flagellar L-ring protein AMD11_RS10530 PF00460 Flagella basal body rod protein AMD11_RS10530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10535 PF00460 Flagella basal body rod protein AMD11_RS10540 PF00460 Flagella basal body rod protein AMD11_RS10540 PF07559 Flagellar basal body protein FlaE AMD11_RS10540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10545 PF03963 Flagellar hook capping protein - N-terminal region AMD11_RS10550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10550 PF00460 Flagella basal body rod protein AMD11_RS10560 PF01584 CheW-like domain AMD11_RS10560 PF00072 Response regulator receiver domain AMD11_RS10580 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS10580 PF13426 PAS domain AMD11_RS10580 PF13188 PAS domain AMD11_RS10580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10580 PF00989 PAS fold AMD11_RS10585 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS10585 PF00563 EAL domain AMD11_RS10585 PF03707 Bacterial signalling protein N terminal repeat AMD11_RS10590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10590 PF07730 Histidine kinase AMD11_RS10595 PF00563 EAL domain AMD11_RS10595 PF03707 Bacterial signalling protein N terminal repeat AMD11_RS10595 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS10605 PF12729 Four helix bundle sensory module for signal transduction AMD11_RS10605 PF00672 HAMP domain AMD11_RS10605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10610 PF04356 Protein of unknown function (DUF489) AMD11_RS10620 PF00293 NUDIX domain AMD11_RS10625 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMD11_RS10630 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS10630 PF17871 AAA lid domain AMD11_RS10630 PF02861 Clp amino terminal domain, pathogenicity island component AMD11_RS10630 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS10630 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS10635 PF01176 Translation initiation factor 1A / IF-1 AMD11_RS10640 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMD11_RS10650 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS10655 PF09397 Ftsk gamma domain AMD11_RS10655 PF17854 FtsK alpha domain AMD11_RS10655 PF01580 FtsK/SpoIIIE family AMD11_RS10655 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMD11_RS10665 PF03548 Outer membrane lipoprotein carrier protein LolA AMD11_RS10675 PF12002 MgsA AAA+ ATPase C terminal AMD11_RS10675 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS10675 PF16193 AAA C-terminal domain AMD11_RS10680 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMD11_RS10690 PF00108 Thiolase, N-terminal domain AMD11_RS10690 PF02803 Thiolase, C-terminal domain AMD11_RS10695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD11_RS10695 PF00378 Enoyl-CoA hydratase/isomerase AMD11_RS10695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD11_RS10705 PF00334 Nucleoside diphosphate kinase AMD11_RS10710 PF04055 Radical SAM superfamily AMD11_RS10720 PF13464 Domain of unknown function (DUF4115) AMD11_RS10730 PF13360 PQQ-like domain AMD11_RS10730 PF01011 PQQ enzyme repeat AMD11_RS10735 PF01926 50S ribosome-binding GTPase AMD11_RS10735 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMD11_RS10740 PF03454 MoeA C-terminal region (domain IV) AMD11_RS10740 PF00994 Probable molybdopterin binding domain AMD11_RS10740 PF03453 MoeA N-terminal region (domain I and II) AMD11_RS10745 PF00899 ThiF family AMD11_RS10770 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS10770 PF13823 Alcohol dehydrogenase GroES-associated AMD11_RS10770 PF00107 Zinc-binding dehydrogenase AMD11_RS10780 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS10790 PF03454 MoeA C-terminal region (domain IV) AMD11_RS10790 PF00994 Probable molybdopterin binding domain AMD11_RS10790 PF03453 MoeA N-terminal region (domain I and II) AMD11_RS10795 PF12804 MobA-like NTP transferase domain AMD11_RS10805 PF00561 alpha/beta hydrolase fold AMD11_RS10810 PF01566 Natural resistance-associated macrophage protein AMD11_RS10815 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMD11_RS10815 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMD11_RS10820 PF14437 MafB19-like deaminase AMD11_RS10825 PF00929 Exonuclease AMD11_RS10830 PF00924 Mechanosensitive ion channel AMD11_RS10830 PF05552 Conserved TM helix AMD11_RS10835 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMD11_RS10835 PF00391 PEP-utilising enzyme, mobile domain AMD11_RS10835 PF02896 PEP-utilising enzyme, TIM barrel domain AMD11_RS10840 PF03618 Kinase/pyrophosphorylase AMD11_RS10860 PF01066 CDP-alcohol phosphatidyltransferase AMD11_RS10870 PF00561 alpha/beta hydrolase fold AMD11_RS10885 PF00355 Rieske [2Fe-2S] domain AMD11_RS10885 PF01266 FAD dependent oxidoreductase AMD11_RS10895 PF16921 Tex protein YqgF-like domain AMD11_RS10895 PF09371 Tex-like protein N-terminal domain AMD11_RS10895 PF00575 S1 RNA binding domain AMD11_RS10895 PF17674 HHH domain AMD11_RS10900 PF09308 LuxQ, periplasmic AMD11_RS10900 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS10900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10900 PF00072 Response regulator receiver domain AMD11_RS10940 PF00034 Cytochrome c AMD11_RS10950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS10955 PF00873 AcrB/AcrD/AcrF family AMD11_RS10960 PF00873 AcrB/AcrD/AcrF family AMD11_RS10965 PF01081 KDPG and KHG aldolase AMD11_RS10970 PF00920 Dehydratase family AMD11_RS10975 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMD11_RS10980 PF02685 Glucokinase AMD11_RS10985 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD11_RS10985 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD11_RS10990 PF00005 ABC transporter AMD11_RS10990 PF17912 MalK OB fold domain AMD11_RS11000 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD11_RS11005 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD11_RS11010 PF00890 FAD binding domain AMD11_RS11010 PF02910 Fumarate reductase flavoprotein C-term AMD11_RS11020 PF13085 2Fe-2S iron-sulfur cluster binding domain AMD11_RS11025 PF03937 Flavinator of succinate dehydrogenase AMD11_RS11035 PF12704 MacB-like periplasmic core domain AMD11_RS11035 PF02687 FtsX-like permease family AMD11_RS11040 PF00005 ABC transporter AMD11_RS11050 PF03772 Competence protein AMD11_RS11050 PF00753 Metallo-beta-lactamase superfamily AMD11_RS11055 PF01618 MotA/TolQ/ExbB proton channel family AMD11_RS11065 PF00005 ABC transporter AMD11_RS11065 PF00664 ABC transporter transmembrane region AMD11_RS11070 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMD11_RS11075 PF02348 Cytidylyltransferase AMD11_RS11080 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD11_RS11090 PF01541 GIY-YIG catalytic domain AMD11_RS11090 PF08459 UvrC Helix-hairpin-helix N-terminal AMD11_RS11090 PF02151 UvrB/uvrC motif AMD11_RS11095 PF01066 CDP-alcohol phosphatidyltransferase AMD11_RS11115 PF00501 AMP-binding enzyme AMD11_RS11115 PF00550 Phosphopantetheine attachment site AMD11_RS11115 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS11115 PF00668 Condensation domain AMD11_RS11120 PF00501 AMP-binding enzyme AMD11_RS11120 PF00975 Thioesterase domain AMD11_RS11120 PF00668 Condensation domain AMD11_RS11120 PF00550 Phosphopantetheine attachment site AMD11_RS11120 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS11130 PF01527 Transposase AMD11_RS11135 PF00665 Integrase core domain AMD11_RS11135 PF13276 HTH-like domain AMD11_RS11135 PF13333 Integrase core domain AMD11_RS11145 PF00589 Phage integrase family AMD11_RS11155 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD11_RS11155 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD11_RS11155 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD11_RS11165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS11175 PF17773 UPF0176 acylphosphatase like domain AMD11_RS11175 PF00581 Rhodanese-like domain AMD11_RS11180 PF00072 Response regulator receiver domain AMD11_RS11180 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS11185 PF12111 Polyribonucleotide phosphorylase C terminal AMD11_RS11185 PF10150 Ribonuclease E/G family AMD11_RS11185 PF00575 S1 RNA binding domain AMD11_RS11190 PF00849 RNA pseudouridylate synthase AMD11_RS11190 PF01479 S4 domain AMD11_RS11195 PF11737 Protein of unknown function (DUF3300) AMD11_RS11200 PF02535 ZIP Zinc transporter AMD11_RS11210 PF01329 Pterin 4 alpha carbinolamine dehydratase AMD11_RS11215 PF01106 NifU-like domain AMD11_RS11270 PF00106 short chain dehydrogenase AMD11_RS11300 PF01494 FAD binding domain AMD11_RS11305 PF09335 SNARE associated Golgi protein AMD11_RS11315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD11_RS11325 PF07995 Glucose / Sorbosone dehydrogenase AMD11_RS11335 PF00144 Beta-lactamase AMD11_RS11340 PF00072 Response regulator receiver domain AMD11_RS11340 PF04397 LytTr DNA-binding domain AMD11_RS11345 PF07694 5TMR of 5TMR-LYT AMD11_RS11345 PF06580 Histidine kinase AMD11_RS11345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS11360 PF03797 Autotransporter beta-domain AMD11_RS11360 PF00082 Subtilase family AMD11_RS11365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS11370 PF00873 AcrB/AcrD/AcrF family AMD11_RS11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS11380 PF00072 Response regulator receiver domain AMD11_RS11380 PF08448 PAS fold AMD11_RS11380 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS11380 PF13426 PAS domain AMD11_RS11385 PF00072 Response regulator receiver domain AMD11_RS11385 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS11390 PF12951 Passenger-associated-transport-repeat AMD11_RS11390 PF12951 Passenger-associated-transport-repeat AMD11_RS11395 PF08448 PAS fold AMD11_RS11395 PF08447 PAS fold AMD11_RS11395 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS11395 PF00563 EAL domain AMD11_RS11410 PF05974 Domain of unknown function (DUF892) AMD11_RS11425 PF14824 Sirohaem biosynthesis protein central AMD11_RS11425 PF10414 Sirohaem synthase dimerisation region AMD11_RS11425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD11_RS11440 PF05977 Transmembrane secretion effector AMD11_RS11450 PF07969 Amidohydrolase family AMD11_RS11460 PF00857 Isochorismatase family AMD11_RS11475 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS11475 PF00072 Response regulator receiver domain AMD11_RS11495 PF03466 LysR substrate binding domain AMD11_RS11495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS11500 PF00361 Proton-conducting membrane transporter AMD11_RS11500 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AMD11_RS11500 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD11_RS11505 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AMD11_RS11520 PF01381 Helix-turn-helix AMD11_RS11525 PF05284 Protein of unknown function (DUF736) AMD11_RS11530 PF04002 RadC-like JAB domain AMD11_RS11555 PF13356 Arm DNA-binding domain AMD11_RS11555 PF00589 Phage integrase family AMD11_RS11570 PF00593 TonB dependent receptor AMD11_RS11570 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS11585 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AMD11_RS11610 PF00593 TonB dependent receptor AMD11_RS11610 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS11620 PF10947 Protein of unknown function (DUF2628) AMD11_RS11630 PF00722 Glycosyl hydrolases family 16 AMD11_RS11630 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMD11_RS11650 PF00005 ABC transporter AMD11_RS11650 PF03412 Peptidase C39 family AMD11_RS11650 PF00664 ABC transporter transmembrane region AMD11_RS11660 PF13614 AAA domain AMD11_RS11700 PF01131 DNA topoisomerase AMD11_RS11700 PF01751 Toprim domain AMD11_RS11705 PF00145 C-5 cytosine-specific DNA methylase AMD11_RS11755 PF06250 YhcG PDDEXK nuclease domain AMD11_RS11755 PF17761 DUF1016 N-terminal domain AMD11_RS11775 PF00892 EamA-like transporter family AMD11_RS11780 PF00892 EamA-like transporter family AMD11_RS11790 PF02525 Flavodoxin-like fold AMD11_RS11795 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS11795 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS11800 PF05544 Proline racemase AMD11_RS11805 PF03358 NADPH-dependent FMN reductase AMD11_RS11815 PF07690 Major Facilitator Superfamily AMD11_RS11820 PF12833 Helix-turn-helix domain AMD11_RS11820 PF02311 AraC-like ligand binding domain AMD11_RS11970 PF12462 DNA helicase IV / RNA helicase N terminal AMD11_RS11970 PF13361 UvrD-like helicase C-terminal domain AMD11_RS11970 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS12045 PF03466 LysR substrate binding domain AMD11_RS12050 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD11_RS12050 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD11_RS12055 PF03401 Tripartite tricarboxylate transporter family receptor AMD11_RS12070 PF04002 RadC-like JAB domain AMD11_RS12105 PF00589 Phage integrase family AMD11_RS12105 PF13356 Arm DNA-binding domain AMD11_RS12110 PF00958 GMP synthase C terminal domain AMD11_RS12110 PF00117 Glutamine amidotransferase class-I AMD11_RS12110 PF02540 NAD synthase AMD11_RS12115 PF00478 IMP dehydrogenase / GMP reductase domain AMD11_RS12115 PF00571 CBS domain AMD11_RS12120 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMD11_RS12120 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMD11_RS12130 PF02254 TrkA-N domain AMD11_RS12130 PF00999 Sodium/hydrogen exchanger family AMD11_RS12135 PF00483 Nucleotidyl transferase AMD11_RS12140 PF02719 Polysaccharide biosynthesis protein AMD11_RS12145 PF00953 Glycosyl transferase family 4 AMD11_RS12150 PF18073 Rubredoxin metal binding domain AMD11_RS12160 PF00216 Bacterial DNA-binding protein AMD11_RS12165 PF00575 S1 RNA binding domain AMD11_RS12170 PF02224 Cytidylate kinase AMD11_RS12175 PF00444 Ribosomal protein L36 AMD11_RS12185 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMD11_RS12190 PF00795 Carbon-nitrogen hydrolase AMD11_RS12215 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS12220 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS12240 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS12250 PF03795 YCII-related domain AMD11_RS12255 PF02616 Segregation and condensation protein ScpA AMD11_RS12260 PF04079 Segregation and condensation complex subunit ScpB AMD11_RS12265 PF01479 S4 domain AMD11_RS12265 PF00849 RNA pseudouridylate synthase AMD11_RS12280 PF00795 Carbon-nitrogen hydrolase AMD11_RS12285 PF00155 Aminotransferase class I and II AMD11_RS12290 PF00005 ABC transporter AMD11_RS12295 PF03379 CcmB protein AMD11_RS12300 PF01578 Cytochrome C assembly protein AMD11_RS12310 PF03100 CcmE AMD11_RS12315 PF01578 Cytochrome C assembly protein AMD11_RS12315 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD11_RS12320 PF08534 Redoxin AMD11_RS12325 PF03918 Cytochrome C biogenesis protein AMD11_RS12335 PF00561 alpha/beta hydrolase fold AMD11_RS12340 PF00313 'Cold-shock' DNA-binding domain AMD11_RS12345 PF00664 ABC transporter transmembrane region AMD11_RS12345 PF00005 ABC transporter AMD11_RS12350 PF00664 ABC transporter transmembrane region AMD11_RS12350 PF00005 ABC transporter AMD11_RS12355 PF01654 Cytochrome bd terminal oxidase subunit I AMD11_RS12360 PF02322 Cytochrome bd terminal oxidase subunit II AMD11_RS12380 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD11_RS12380 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD11_RS12385 PF00171 Aldehyde dehydrogenase family AMD11_RS12390 PF01472 PUA domain AMD11_RS12390 PF00696 Amino acid kinase family AMD11_RS12400 PF00206 Lyase AMD11_RS12405 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD11_RS12415 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase AMD11_RS12415 PF00696 Amino acid kinase family AMD11_RS12420 PF01546 Peptidase family M20/M25/M40 AMD11_RS12420 PF07687 Peptidase dimerisation domain AMD11_RS12430 PF00764 Arginosuccinate synthase AMD11_RS12435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD11_RS12435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD11_RS12445 PF09190 DALR domain AMD11_RS12445 PF01406 tRNA synthetases class I (C) catalytic domain AMD11_RS12450 PF02657 Fe-S metabolism associated domain AMD11_RS12460 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD11_RS12470 PF01809 Putative membrane protein insertion efficiency factor AMD11_RS12475 PF01979 Amidohydrolase family AMD11_RS12480 PF08460 Bacterial SH3 domain AMD11_RS12480 PF01551 Peptidase family M23 AMD11_RS12495 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMD11_RS12500 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AMD11_RS12510 PF00753 Metallo-beta-lactamase superfamily AMD11_RS12530 PF01527 Transposase AMD11_RS12535 PF00295 Glycosyl hydrolases family 28 AMD11_RS12545 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS12555 PF01979 Amidohydrolase family AMD11_RS12565 PF08207 Elongation factor P (EF-P) KOW-like domain AMD11_RS12565 PF09285 Elongation factor P, C-terminal AMD11_RS12565 PF01132 Elongation factor P (EF-P) OB domain AMD11_RS12570 PF04055 Radical SAM superfamily AMD11_RS12575 PF13188 PAS domain AMD11_RS12575 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS12575 PF00563 EAL domain AMD11_RS12575 PF03707 Bacterial signalling protein N terminal repeat AMD11_RS12585 PF00588 SpoU rRNA Methylase family AMD11_RS12590 PF00459 Inositol monophosphatase family AMD11_RS12595 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD11_RS12595 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD11_RS12600 PF00545 ribonuclease AMD11_RS12610 PF12848 ABC transporter AMD11_RS12610 PF16326 ABC transporter C-terminal domain AMD11_RS12610 PF00005 ABC transporter AMD11_RS12615 PF00270 DEAD/DEAH box helicase AMD11_RS12615 PF03880 DbpA RNA binding domain AMD11_RS12615 PF00271 Helicase conserved C-terminal domain AMD11_RS12620 PF00156 Phosphoribosyl transferase domain AMD11_RS12625 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMD11_RS12630 PF00135 Carboxylesterase family AMD11_RS12635 PF14497 Glutathione S-transferase, C-terminal domain AMD11_RS12635 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS12640 PF00313 'Cold-shock' DNA-binding domain AMD11_RS12645 PF07152 YaeQ protein AMD11_RS12655 PF00563 EAL domain AMD11_RS12655 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS12655 PF00072 Response regulator receiver domain AMD11_RS12660 PF01435 Peptidase family M48 AMD11_RS12665 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD11_RS12670 PF00106 short chain dehydrogenase AMD11_RS12675 PF05233 PHB accumulation regulatory domain AMD11_RS12675 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMD11_RS12690 PF08676 MutL C terminal dimerisation domain AMD11_RS12690 PF01119 DNA mismatch repair protein, C-terminal domain AMD11_RS12695 PF01520 N-acetylmuramoyl-L-alanine amidase AMD11_RS12695 PF11741 AMIN domain AMD11_RS12700 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMD11_RS12705 PF01256 Carbohydrate kinase AMD11_RS12705 PF03853 YjeF-related protein N-terminus AMD11_RS12710 PF08331 Domain of unknown function (DUF1730) AMD11_RS12715 PF13742 OB-fold nucleic acid binding domain AMD11_RS12715 PF02601 Exonuclease VII, large subunit AMD11_RS12725 PF03781 Sulfatase-modifying factor enzyme 1 AMD11_RS12730 PF00570 HRDC domain AMD11_RS12730 PF01612 3'-5' exonuclease AMD11_RS12735 PF04679 ATP dependent DNA ligase C terminal region AMD11_RS12735 PF01068 ATP dependent DNA ligase domain AMD11_RS12735 PF13298 DNA polymerase Ligase (LigD) AMD11_RS12755 PF00589 Phage integrase family AMD11_RS12780 PF05598 Transposase domain (DUF772) AMD11_RS12790 PF01527 Transposase AMD11_RS12810 PF00171 Aldehyde dehydrogenase family AMD11_RS12810 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD11_RS12810 PF14850 DNA-binding domain of Proline dehydrogenase AMD11_RS12810 PF01619 Proline dehydrogenase AMD11_RS12820 PF01527 Transposase AMD11_RS12825 PF13276 HTH-like domain AMD11_RS12825 PF00665 Integrase core domain AMD11_RS12825 PF13333 Integrase core domain AMD11_RS12830 PF02796 Helix-turn-helix domain of resolvase AMD11_RS12830 PF00239 Resolvase, N terminal domain AMD11_RS12845 PF02384 N-6 DNA Methylase AMD11_RS12850 PF09572 XamI restriction endonuclease AMD11_RS12905 PF01584 CheW-like domain AMD11_RS12910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS12910 PF00672 HAMP domain AMD11_RS12910 PF02743 Cache domain AMD11_RS12915 PF02245 Methylpurine-DNA glycosylase (MPG) AMD11_RS12920 PF00270 DEAD/DEAH box helicase AMD11_RS12920 PF08494 DEAD/H associated AMD11_RS12920 PF00271 Helicase conserved C-terminal domain AMD11_RS12935 PF04386 Stringent starvation protein B AMD11_RS12940 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS12940 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS12945 PF02167 Cytochrome C1 family AMD11_RS12950 PF00032 Cytochrome b(C-terminal)/b6/petD AMD11_RS12950 PF00033 Cytochrome b/b6/petB AMD11_RS12955 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMD11_RS12955 PF00355 Rieske [2Fe-2S] domain AMD11_RS12960 PF01464 Transglycosylase SLT domain AMD11_RS12975 PF00919 Uncharacterized protein family UPF0004 AMD11_RS12975 PF01938 TRAM domain AMD11_RS12975 PF04055 Radical SAM superfamily AMD11_RS12980 PF02562 PhoH-like protein AMD11_RS12990 PF02130 Uncharacterized protein family UPF0054 AMD11_RS13000 PF03471 Transporter associated domain AMD11_RS13000 PF00571 CBS domain AMD11_RS13015 PF00171 Aldehyde dehydrogenase family AMD11_RS13025 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS13030 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS13035 PF08402 TOBE domain AMD11_RS13035 PF00005 ABC transporter AMD11_RS13040 PF02321 Outer membrane efflux protein AMD11_RS13045 PF07690 Major Facilitator Superfamily AMD11_RS13050 PF13533 Biotin-lipoyl like AMD11_RS13055 PF13416 Bacterial extracellular solute-binding protein AMD11_RS13060 PF00202 Aminotransferase class-III AMD11_RS13065 PF00120 Glutamine synthetase, catalytic domain AMD11_RS13070 PF07722 Peptidase C26 AMD11_RS13075 PF00120 Glutamine synthetase, catalytic domain AMD11_RS13080 PF01266 FAD dependent oxidoreductase AMD11_RS13085 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS13085 PF00072 Response regulator receiver domain AMD11_RS13090 PF01814 Hemerythrin HHE cation binding domain AMD11_RS13095 PF00083 Sugar (and other) transporter AMD11_RS13095 PF07690 Major Facilitator Superfamily AMD11_RS13105 PF00384 Molybdopterin oxidoreductase AMD11_RS13110 PF02634 FdhD/NarQ family AMD11_RS13115 PF07690 Major Facilitator Superfamily AMD11_RS13120 PF00202 Aminotransferase class-III AMD11_RS13130 PF04286 Protein of unknown function (DUF445) AMD11_RS13135 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS13135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS13135 PF00672 HAMP domain AMD11_RS13135 PF01627 Hpt domain AMD11_RS13135 PF00072 Response regulator receiver domain AMD11_RS13135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD11_RS13140 PF00072 Response regulator receiver domain AMD11_RS13145 PF07690 Major Facilitator Superfamily AMD11_RS13150 PF05088 Bacterial NAD-glutamate dehydrogenase AMD11_RS13160 PF00529 HlyD membrane-fusion protein of T1SS AMD11_RS13160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS13165 PF00873 AcrB/AcrD/AcrF family AMD11_RS13170 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS13175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD11_RS13175 PF00391 PEP-utilising enzyme, mobile domain AMD11_RS13175 PF05524 PEP-utilising enzyme, N-terminal AMD11_RS13175 PF02896 PEP-utilising enzyme, TIM barrel domain AMD11_RS13175 PF00381 PTS HPr component phosphorylation site AMD11_RS13180 PF00294 pfkB family carbohydrate kinase AMD11_RS13185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD11_RS13220 PF07549 SecD/SecF GG Motif AMD11_RS13220 PF02355 Protein export membrane protein AMD11_RS13225 PF07549 SecD/SecF GG Motif AMD11_RS13225 PF13721 SecD export protein N-terminal TM region AMD11_RS13225 PF02355 Protein export membrane protein AMD11_RS13230 PF02699 Preprotein translocase subunit AMD11_RS13235 PF01702 Queuine tRNA-ribosyltransferase AMD11_RS13240 PF02547 Queuosine biosynthesis protein AMD11_RS13285 PF00759 Glycosyl hydrolase family 9 AMD11_RS13285 PF02927 Cellulase N-terminal ig-like domain AMD11_RS13300 PF00037 4Fe-4S binding domain AMD11_RS13315 PF01467 Cytidylyltransferase-like AMD11_RS13325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS13325 PF00183 Hsp90 protein AMD11_RS13340 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS13340 PF00593 TonB dependent receptor AMD11_RS13350 PF04616 Glycosyl hydrolases family 43 AMD11_RS13355 PF07532 Bacterial Ig-like domain (group 4) AMD11_RS13360 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS13360 PF00593 TonB dependent receptor AMD11_RS13370 PF09286 Pro-kumamolisin, activation domain AMD11_RS13370 PF00082 Subtilase family AMD11_RS13395 PF13520 Amino acid permease AMD11_RS13410 PF00557 Metallopeptidase family M24 AMD11_RS13410 PF01321 Creatinase/Prolidase N-terminal domain AMD11_RS13415 PF00171 Aldehyde dehydrogenase family AMD11_RS13420 PF00701 Dihydrodipicolinate synthetase family AMD11_RS13425 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS13425 PF04324 BFD-like [2Fe-2S] binding domain AMD11_RS13435 PF01266 FAD dependent oxidoreductase AMD11_RS13440 PF05544 Proline racemase AMD11_RS13450 PF00448 SRP54-type protein, GTPase domain AMD11_RS13450 PF02881 SRP54-type protein, helical bundle domain AMD11_RS13455 PF14815 NUDIX domain AMD11_RS13455 PF10576 Iron-sulfur binding domain of endonuclease III AMD11_RS13455 PF00633 Helix-hairpin-helix motif AMD11_RS13455 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD11_RS13460 PF04362 Bacterial Fe(2+) trafficking AMD11_RS13465 PF00072 Response regulator receiver domain AMD11_RS13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS13465 PF13426 PAS domain AMD11_RS13495 PF08212 Lipocalin-like domain AMD11_RS13505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS13505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS13505 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMD11_RS13505 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS13515 PF02779 Transketolase, pyrimidine binding domain AMD11_RS13515 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMD11_RS13515 PF02780 Transketolase, C-terminal domain AMD11_RS13535 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD11_RS13540 PF00753 Metallo-beta-lactamase superfamily AMD11_RS13540 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD11_RS13545 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD11_RS13545 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD11_RS13560 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD11_RS13575 PF14667 Polysaccharide biosynthesis C-terminal domain AMD11_RS13585 PF13439 Glycosyltransferase Family 4 AMD11_RS13585 PF00534 Glycosyl transferases group 1 AMD11_RS13605 PF02397 Bacterial sugar transferase AMD11_RS13625 PF13411 MerR HTH family regulatory protein AMD11_RS13630 PF00216 Bacterial DNA-binding protein AMD11_RS13635 PF03483 B3/4 domain AMD11_RS13635 PF03147 Ferredoxin-fold anticodon binding domain AMD11_RS13635 PF01588 Putative tRNA binding domain AMD11_RS13635 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMD11_RS13635 PF03484 tRNA synthetase B5 domain AMD11_RS13640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMD11_RS13640 PF01409 tRNA synthetases class II core domain (F) AMD11_RS13645 PF00453 Ribosomal protein L20 AMD11_RS13650 PF01632 Ribosomal protein L35 AMD11_RS13655 PF00707 Translation initiation factor IF-3, C-terminal domain AMD11_RS13655 PF05198 Translation initiation factor IF-3, N-terminal domain AMD11_RS13660 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD11_RS13660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD11_RS13660 PF03129 Anticodon binding domain AMD11_RS13660 PF02824 TGS domain AMD11_RS13665 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS13670 PF00686 Starch binding domain AMD11_RS13670 PF00128 Alpha amylase, catalytic domain AMD11_RS13675 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMD11_RS13685 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD11_RS13685 PF14508 Glycosyl-hydrolase 97 N-terminal AMD11_RS13685 PF10566 Glycoside hydrolase 97 AMD11_RS13700 PF00128 Alpha amylase, catalytic domain AMD11_RS13705 PF01527 Transposase AMD11_RS13745 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AMD11_RS13760 PF01464 Transglycosylase SLT domain AMD11_RS13765 PF00437 Type II/IV secretion system protein AMD11_RS13770 PF03743 Bacterial conjugation TrbI-like protein AMD11_RS13790 PF02534 Type IV secretory system Conjugative DNA transfer AMD11_RS13805 PF04851 Type III restriction enzyme, res subunit AMD11_RS13805 PF02151 UvrB/uvrC motif AMD11_RS13805 PF12344 Ultra-violet resistance protein B AMD11_RS13805 PF17757 UvrB interaction domain AMD11_RS13805 PF00271 Helicase conserved C-terminal domain AMD11_RS13870 PF01555 DNA methylase AMD11_RS13920 PF00182 Chitinase class I AMD11_RS13985 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor AMD11_RS13985 PF07963 Prokaryotic N-terminal methylation motif AMD11_RS13990 PF05567 Neisseria PilC beta-propeller domain AMD11_RS14015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS14015 PF06580 Histidine kinase AMD11_RS14015 PF07694 5TMR of 5TMR-LYT AMD11_RS14020 PF03641 Possible lysine decarboxylase AMD11_RS14020 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AMD11_RS14020 PF11892 Domain of unknown function (DUF3412) AMD11_RS14025 PF00593 TonB dependent receptor AMD11_RS14030 PF01914 MarC family integral membrane protein AMD11_RS14040 PF00462 Glutaredoxin AMD11_RS14045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD11_RS14045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD11_RS14050 PF02222 ATP-grasp domain AMD11_RS14050 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMD11_RS14055 PF00731 AIR carboxylase AMD11_RS14065 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMD11_RS14065 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMD11_RS14075 PF00013 KH domain AMD11_RS14075 PF01138 3' exoribonuclease family, domain 1 AMD11_RS14075 PF03725 3' exoribonuclease family, domain 2 AMD11_RS14075 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMD11_RS14075 PF00575 S1 RNA binding domain AMD11_RS14080 PF00312 Ribosomal protein S15 AMD11_RS14085 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMD11_RS14085 PF09157 Pseudouridine synthase II TruB, C-terminal AMD11_RS14085 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMD11_RS14090 PF02033 Ribosome-binding factor A AMD11_RS14095 PF04760 Translation initiation factor IF-2, N-terminal region AMD11_RS14095 PF11987 Translation-initiation factor 2 AMD11_RS14095 PF00009 Elongation factor Tu GTP binding domain AMD11_RS14095 PF08364 Bacterial translation initiation factor IF-2 associated region AMD11_RS14100 PF08529 NusA N-terminal domain AMD11_RS14100 PF00575 S1 RNA binding domain AMD11_RS14100 PF13184 NusA-like KH domain AMD11_RS14105 PF02576 RimP N-terminal domain AMD11_RS14105 PF17384 RimP C-terminal SH3 domain AMD11_RS14115 PF00361 Proton-conducting membrane transporter AMD11_RS14120 PF00361 Proton-conducting membrane transporter AMD11_RS14120 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMD11_RS14125 PF00361 Proton-conducting membrane transporter AMD11_RS14125 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD11_RS14130 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD11_RS14135 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMD11_RS14140 PF12838 4Fe-4S dicluster domain AMD11_RS14145 PF00146 NADH dehydrogenase AMD11_RS14150 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD11_RS14150 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMD11_RS14150 PF00384 Molybdopterin oxidoreductase AMD11_RS14155 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMD11_RS14155 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD11_RS14155 PF10531 SLBB domain AMD11_RS14165 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMD11_RS14170 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMD11_RS14175 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMD11_RS14180 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMD11_RS14195 PF00121 Triosephosphate isomerase AMD11_RS14200 PF00106 short chain dehydrogenase AMD11_RS14215 PF03707 Bacterial signalling protein N terminal repeat AMD11_RS14215 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS14215 PF00563 EAL domain AMD11_RS14235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD11_RS14235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD11_RS14235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD11_RS14235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD11_RS14240 PF17848 Acetyl-coA carboxylase zinc finger domain AMD11_RS14240 PF01039 Carboxyl transferase domain AMD11_RS14245 PF00290 Tryptophan synthase alpha chain AMD11_RS14255 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS14260 PF03466 LysR substrate binding domain AMD11_RS14265 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMD11_RS14270 PF01416 tRNA pseudouridine synthase AMD11_RS14290 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD11_RS14290 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMD11_RS14295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD11_RS14295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD11_RS14300 PF01264 Chorismate synthase AMD11_RS14305 PF05175 Methyltransferase small domain AMD11_RS14310 PF02630 SCO1/SenC AMD11_RS14315 PF02666 Phosphatidylserine decarboxylase AMD11_RS14325 PF05872 Bacterial protein of unknown function (DUF853) AMD11_RS14330 PF00293 NUDIX domain AMD11_RS14345 PF03449 Transcription elongation factor, N-terminal AMD11_RS14345 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD11_RS14350 PF18693 TRAM domain AMD11_RS14350 PF00919 Uncharacterized protein family UPF0004 AMD11_RS14350 PF04055 Radical SAM superfamily AMD11_RS14355 PF01738 Dienelactone hydrolase family AMD11_RS14375 PF00692 dUTPase AMD11_RS14380 PF10609 NUBPL iron-transfer P-loop NTPase AMD11_RS14385 PF00593 TonB dependent receptor AMD11_RS14385 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS14400 PF01431 Peptidase family M13 AMD11_RS14400 PF05649 Peptidase family M13 AMD11_RS14405 PF05649 Peptidase family M13 AMD11_RS14405 PF01431 Peptidase family M13 AMD11_RS14420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD11_RS14425 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS14425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD11_RS14430 PF01266 FAD dependent oxidoreductase AMD11_RS14435 PF04235 Protein of unknown function (DUF418) AMD11_RS14440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS14445 PF00877 NlpC/P60 family AMD11_RS14450 PF00877 NlpC/P60 family AMD11_RS14465 PF00375 Sodium:dicarboxylate symporter family AMD11_RS14470 PF00245 Alkaline phosphatase AMD11_RS14475 PF11734 TilS substrate C-terminal domain AMD11_RS14475 PF01171 PP-loop family AMD11_RS14475 PF09179 TilS substrate binding domain AMD11_RS14480 PF02609 Exonuclease VII small subunit AMD11_RS14485 PF00348 Polyprenyl synthetase AMD11_RS14490 PF14521 Lysine-specific metallo-endopeptidase AMD11_RS14500 PF01523 Putative modulator of DNA gyrase AMD11_RS14505 PF04751 Protein of unknown function (DUF615) AMD11_RS14510 PF01523 Putative modulator of DNA gyrase AMD11_RS14520 PF13116 Protein of unknown function AMD11_RS14520 PF13502 AsmA-like C-terminal region AMD11_RS14525 PF10150 Ribonuclease E/G family AMD11_RS14525 PF00575 S1 RNA binding domain AMD11_RS14530 PF02545 Maf-like protein AMD11_RS14535 PF04402 Protein of unknown function (DUF541) AMD11_RS14550 PF02590 Predicted SPOUT methyltransferase AMD11_RS14565 PF01467 Cytidylyltransferase-like AMD11_RS14580 PF08264 Anticodon-binding domain of tRNA AMD11_RS14580 PF00133 tRNA synthetases class I (I, L, M and V) AMD11_RS14580 PF13603 Leucyl-tRNA synthetase, Domain 2 AMD11_RS14590 PF00085 Thioredoxin AMD11_RS14615 PF04070 Domain of unknown function (DUF378) AMD11_RS14620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD11_RS14630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS14630 PF03466 LysR substrate binding domain AMD11_RS14660 PF00005 ABC transporter AMD11_RS14660 PF00664 ABC transporter transmembrane region AMD11_RS14670 PF00873 AcrB/AcrD/AcrF family AMD11_RS14685 PF02321 Outer membrane efflux protein AMD11_RS14690 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS14690 PF00072 Response regulator receiver domain AMD11_RS14695 PF00672 HAMP domain AMD11_RS14695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS14695 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS14700 PF00999 Sodium/hydrogen exchanger family AMD11_RS14705 PF00144 Beta-lactamase AMD11_RS14710 PF03737 Aldolase/RraA AMD11_RS14730 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS14735 PF00849 RNA pseudouridylate synthase AMD11_RS14735 PF01479 S4 domain AMD11_RS14740 PF00563 EAL domain AMD11_RS14740 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS14740 PF08448 PAS fold AMD11_RS14745 PF00271 Helicase conserved C-terminal domain AMD11_RS14745 PF03880 DbpA RNA binding domain AMD11_RS14745 PF00270 DEAD/DEAH box helicase AMD11_RS14795 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMD11_RS14795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD11_RS14805 PF00654 Voltage gated chloride channel AMD11_RS14810 PF00107 Zinc-binding dehydrogenase AMD11_RS14810 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS14825 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS14825 PF00593 TonB dependent receptor AMD11_RS14835 PF01483 Proprotein convertase P-domain AMD11_RS14835 PF00082 Subtilase family AMD11_RS14845 PF00082 Subtilase family AMD11_RS14845 PF01483 Proprotein convertase P-domain AMD11_RS14855 PF00248 Aldo/keto reductase family AMD11_RS14860 PF07690 Major Facilitator Superfamily AMD11_RS14865 PF03466 LysR substrate binding domain AMD11_RS14865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS14875 PF06719 AraC-type transcriptional regulator N-terminus AMD11_RS14875 PF12833 Helix-turn-helix domain AMD11_RS14885 PF16859 Tetracyclin repressor-like, C-terminal domain AMD11_RS14885 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS14890 PF02321 Outer membrane efflux protein AMD11_RS14895 PF00873 AcrB/AcrD/AcrF family AMD11_RS14900 PF00529 HlyD membrane-fusion protein of T1SS AMD11_RS14900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS14910 PF01475 Ferric uptake regulator family AMD11_RS14915 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD11_RS14940 PF06123 Inner membrane protein CreD AMD11_RS14950 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS14950 PF00672 HAMP domain AMD11_RS14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS14955 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS14955 PF00072 Response regulator receiver domain AMD11_RS14960 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMD11_RS14970 PF00271 Helicase conserved C-terminal domain AMD11_RS14970 PF00270 DEAD/DEAH box helicase AMD11_RS14970 PF03461 TRCF domain AMD11_RS14970 PF02559 CarD-like/TRCF domain AMD11_RS14970 PF17757 UvrB interaction domain AMD11_RS15005 PF01627 Hpt domain AMD11_RS15005 PF09078 CheY binding AMD11_RS15005 PF02895 Signal transducing histidine kinase, homodimeric domain AMD11_RS15005 PF01584 CheW-like domain AMD11_RS15005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS15010 PF02203 Tar ligand binding domain homologue AMD11_RS15010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS15010 PF00672 HAMP domain AMD11_RS15015 PF01584 CheW-like domain AMD11_RS15020 PF13426 PAS domain AMD11_RS15020 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS15020 PF00563 EAL domain AMD11_RS15025 PF01739 CheR methyltransferase, SAM binding domain AMD11_RS15025 PF03705 CheR methyltransferase, all-alpha domain AMD11_RS15030 PF00072 Response regulator receiver domain AMD11_RS15030 PF01339 CheB methylesterase AMD11_RS15035 PF13091 PLD-like domain AMD11_RS15040 PF05649 Peptidase family M13 AMD11_RS15040 PF01431 Peptidase family M13 AMD11_RS15050 PF00300 Histidine phosphatase superfamily (branch 1) AMD11_RS15055 PF04493 Endonuclease V AMD11_RS15065 PF02678 Pirin AMD11_RS15065 PF05726 Pirin C-terminal cupin domain AMD11_RS15080 PF02678 Pirin AMD11_RS15080 PF05726 Pirin C-terminal cupin domain AMD11_RS15085 PF13722 5TM C-terminal transporter carbon starvation CstA AMD11_RS15085 PF02554 Carbon starvation protein CstA AMD11_RS15090 PF04328 Selenoprotein, putative AMD11_RS15135 PF01527 Transposase AMD11_RS15145 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD11_RS15145 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD11_RS15150 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD11_RS15150 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD11_RS15155 PF01799 [2Fe-2S] binding domain AMD11_RS15155 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS15155 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMD11_RS15160 PF16197 Ketoacyl-synthetase C-terminal extension AMD11_RS15160 PF08990 Erythronolide synthase docking AMD11_RS15160 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS15160 PF00698 Acyl transferase domain AMD11_RS15160 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD11_RS15160 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD11_RS15160 PF00550 Phosphopantetheine attachment site AMD11_RS15160 PF14765 Polyketide synthase dehydratase AMD11_RS15160 PF09277 Erythronolide synthase, docking AMD11_RS15160 PF08659 KR domain AMD11_RS15165 PF01590 GAF domain AMD11_RS15165 PF00360 Phytochrome region AMD11_RS15165 PF00563 EAL domain AMD11_RS15165 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS15180 PF12161 HsdM N-terminal domain AMD11_RS15180 PF02384 N-6 DNA Methylase AMD11_RS15205 PF00436 Single-strand binding protein family AMD11_RS15210 PF00348 Polyprenyl synthetase AMD11_RS15220 PF08245 Mur ligase middle domain AMD11_RS15220 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS15235 PF00696 Amino acid kinase family AMD11_RS15235 PF01842 ACT domain AMD11_RS15240 PF02567 Phenazine biosynthesis-like protein AMD11_RS15245 PF02567 Phenazine biosynthesis-like protein AMD11_RS15255 PF02566 OsmC-like protein AMD11_RS15260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD11_RS15260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD11_RS15265 PF03652 Holliday junction resolvase AMD11_RS15270 PF02622 Uncharacterized ACR, COG1678 AMD11_RS15280 PF00958 GMP synthase C terminal domain AMD11_RS15280 PF00117 Glutamine amidotransferase class-I AMD11_RS15280 PF13673 Acetyltransferase (GNAT) domain AMD11_RS15280 PF13302 Acetyltransferase (GNAT) domain AMD11_RS15280 PF03352 Methyladenine glycosylase AMD11_RS15290 PF03211 Pectate lyase AMD11_RS15295 PF00437 Type II/IV secretion system protein AMD11_RS15300 PF00437 Type II/IV secretion system protein AMD11_RS15305 PF01168 Alanine racemase, N-terminal domain AMD11_RS15310 PF03807 NADP oxidoreductase coenzyme F420-dependent AMD11_RS15310 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMD11_RS15320 PF01551 Peptidase family M23 AMD11_RS15340 PF01965 DJ-1/PfpI family AMD11_RS15350 PF02082 Transcriptional regulator AMD11_RS15355 PF01458 Uncharacterized protein family (UPF0051) AMD11_RS15360 PF00005 ABC transporter AMD11_RS15365 PF01458 Uncharacterized protein family (UPF0051) AMD11_RS15370 PF00266 Aminotransferase class-V AMD11_RS15380 PF00355 Rieske [2Fe-2S] domain AMD11_RS15385 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS15385 PF00593 TonB dependent receptor AMD11_RS15390 PF18331 PKHD-type hydroxylase C-terminal domain AMD11_RS15390 PF13640 2OG-Fe(II) oxygenase superfamily AMD11_RS15415 PF02424 ApbE family AMD11_RS15420 PF00175 Oxidoreductase NAD-binding domain AMD11_RS15420 PF00258 Flavodoxin AMD11_RS15420 PF00667 FAD binding domain AMD11_RS15440 PF07687 Peptidase dimerisation domain AMD11_RS15440 PF01546 Peptidase family M20/M25/M40 AMD11_RS15450 PF01636 Phosphotransferase enzyme family AMD11_RS15455 PF00483 Nucleotidyl transferase AMD11_RS15460 PF00308 Bacterial dnaA protein AMD11_RS15465 PF01594 AI-2E family transporter AMD11_RS15475 PF02769 AIR synthase related protein, C-terminal domain AMD11_RS15475 PF00586 AIR synthase related protein, N-terminal domain AMD11_RS15485 PF00551 Formyl transferase AMD11_RS15505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD11_RS15510 PF01722 BolA-like protein AMD11_RS15515 PF01380 SIS domain AMD11_RS15515 PF00571 CBS domain AMD11_RS15530 PF03968 OstA-like protein AMD11_RS15535 PF00005 ABC transporter AMD11_RS15540 PF04552 Sigma-54, DNA binding domain AMD11_RS15540 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD11_RS15540 PF04963 Sigma-54 factor, core binding domain AMD11_RS15545 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD11_RS15550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD11_RS15555 PF02603 HPr Serine kinase N terminus AMD11_RS15555 PF07475 HPr Serine kinase C-terminal domain AMD11_RS15560 PF03668 P-loop ATPase protein family AMD11_RS15570 PF00381 PTS HPr component phosphorylation site AMD11_RS15575 PF00391 PEP-utilising enzyme, mobile domain AMD11_RS15575 PF05524 PEP-utilising enzyme, N-terminal AMD11_RS15575 PF02896 PEP-utilising enzyme, TIM barrel domain AMD11_RS15580 PF03448 MgtE intracellular N domain AMD11_RS15580 PF00571 CBS domain AMD11_RS15580 PF01769 Divalent cation transporter AMD11_RS15585 PF00756 Putative esterase AMD11_RS15590 PF02322 Cytochrome bd terminal oxidase subunit II AMD11_RS15595 PF01654 Cytochrome bd terminal oxidase subunit I AMD11_RS15605 PF00324 Amino acid permease AMD11_RS15610 PF00544 Pectate lyase AMD11_RS15615 PF00561 alpha/beta hydrolase fold AMD11_RS15625 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS15630 PF00324 Amino acid permease AMD11_RS15650 PF12706 Beta-lactamase superfamily domain AMD11_RS15655 PF04820 Tryptophan halogenase AMD11_RS15680 PF00376 MerR family regulatory protein AMD11_RS15680 PF09278 MerR, DNA binding AMD11_RS15685 PF07690 Major Facilitator Superfamily AMD11_RS15695 PF03738 Glutathionylspermidine synthase preATP-grasp AMD11_RS15720 PF04012 PspA/IM30 family AMD11_RS15730 PF01243 Pyridoxamine 5'-phosphate oxidase AMD11_RS15730 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMD11_RS15735 PF01202 Shikimate kinase AMD11_RS15740 PF01761 3-dehydroquinate synthase AMD11_RS15750 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMD11_RS15820 PF00158 Sigma-54 interaction domain AMD11_RS15820 PF01590 GAF domain AMD11_RS15820 PF02954 Bacterial regulatory protein, Fis family AMD11_RS15825 PF07690 Major Facilitator Superfamily AMD11_RS15830 PF00672 HAMP domain AMD11_RS15830 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD11_RS15830 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS15830 PF01627 Hpt domain AMD11_RS15830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS15830 PF00072 Response regulator receiver domain AMD11_RS15835 PF00672 HAMP domain AMD11_RS15835 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD11_RS15835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS15835 PF00072 Response regulator receiver domain AMD11_RS15835 PF01627 Hpt domain AMD11_RS15835 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS15845 PF01627 Hpt domain AMD11_RS15845 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS15845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS15845 PF00072 Response regulator receiver domain AMD11_RS15850 PF04264 YceI-like domain AMD11_RS15870 PF03315 Serine dehydratase beta chain AMD11_RS15870 PF03313 Serine dehydratase alpha chain AMD11_RS15875 PF12697 Alpha/beta hydrolase family AMD11_RS15880 PF00742 Homoserine dehydrogenase AMD11_RS15880 PF03447 Homoserine dehydrogenase, NAD binding domain AMD11_RS15880 PF00696 Amino acid kinase family AMD11_RS15885 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD11_RS15890 PF00561 alpha/beta hydrolase fold AMD11_RS15895 PF01476 LysM domain AMD11_RS15895 PF08525 Opacity-associated protein A N-terminal motif AMD11_RS15895 PF01551 Peptidase family M23 AMD11_RS15900 PF00009 Elongation factor Tu GTP binding domain AMD11_RS15900 PF16658 Class II release factor RF3, C-terminal domain AMD11_RS15905 PF03006 Haemolysin-III related AMD11_RS15910 PF05170 AsmA family AMD11_RS15915 PF00478 IMP dehydrogenase / GMP reductase domain AMD11_RS15915 PF00571 CBS domain AMD11_RS15920 PF00535 Glycosyl transferase family 2 AMD11_RS15925 PF00912 Transglycosylase AMD11_RS15930 PF01430 Hsp33 protein AMD11_RS15940 PF00593 TonB dependent receptor AMD11_RS15940 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS15950 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS15955 PF00561 alpha/beta hydrolase fold AMD11_RS15960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS15960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS15960 PF09317 Domain of unknown function (DUF1974) AMD11_RS15985 PF01597 Glycine cleavage H-protein AMD11_RS15990 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD11_RS15990 PF01571 Aminomethyltransferase folate-binding domain AMD11_RS16000 PF16200 C-terminal region of band_7 AMD11_RS16000 PF01145 SPFH domain / Band 7 family AMD11_RS16005 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMD11_RS16010 PF03819 MazG nucleotide pyrophosphohydrolase domain AMD11_RS16015 PF00459 Inositol monophosphatase family AMD11_RS16020 PF00293 NUDIX domain AMD11_RS16025 PF00202 Aminotransferase class-III AMD11_RS16030 PF04452 RNA methyltransferase AMD11_RS16035 PF02685 Glucokinase AMD11_RS16050 PF01476 LysM domain AMD11_RS16050 PF00704 Glycosyl hydrolases family 18 AMD11_RS16055 PF00728 Glycosyl hydrolase family 20, catalytic domain AMD11_RS16055 PF02838 Glycosyl hydrolase family 20, domain 2 AMD11_RS16055 PF07691 PA14 domain AMD11_RS16065 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS16065 PF07691 PA14 domain AMD11_RS16065 PF14310 Fibronectin type III-like domain AMD11_RS16065 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS16075 PF01301 Glycosyl hydrolases family 35 AMD11_RS16080 PF13520 Amino acid permease AMD11_RS16090 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMD11_RS16090 PF02056 Family 4 glycosyl hydrolase AMD11_RS16100 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD11_RS16100 PF07971 Glycosyl hydrolase family 92 AMD11_RS16105 PF01301 Glycosyl hydrolases family 35 AMD11_RS16135 PF03932 CutC family AMD11_RS16140 PF01112 Asparaginase AMD11_RS16150 PF13302 Acetyltransferase (GNAT) domain AMD11_RS16165 PF01584 CheW-like domain AMD11_RS16165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS16165 PF02895 Signal transducing histidine kinase, homodimeric domain AMD11_RS16165 PF01627 Hpt domain AMD11_RS16165 PF00072 Response regulator receiver domain AMD11_RS16170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS16170 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMD11_RS16175 PF01584 CheW-like domain AMD11_RS16180 PF00072 Response regulator receiver domain AMD11_RS16185 PF00072 Response regulator receiver domain AMD11_RS16190 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMD11_RS16190 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMD11_RS16200 PF03747 ADP-ribosylglycohydrolase AMD11_RS16205 PF00814 Glycoprotease family AMD11_RS16210 PF04851 Type III restriction enzyme, res subunit AMD11_RS16210 PF13307 Helicase C-terminal domain AMD11_RS16220 PF00912 Transglycosylase AMD11_RS16220 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS16220 PF14814 Bifunctional transglycosylase second domain AMD11_RS16225 PF00535 Glycosyl transferase family 2 AMD11_RS16235 PF13291 ACT domain AMD11_RS16235 PF04607 Region found in RelA / SpoT proteins AMD11_RS16235 PF02824 TGS domain AMD11_RS16240 PF12706 Beta-lactamase superfamily domain AMD11_RS16245 PF03070 TENA/THI-4/PQQC family AMD11_RS16250 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMD11_RS16255 PF13186 Iron-sulfur cluster-binding domain AMD11_RS16255 PF04055 Radical SAM superfamily AMD11_RS16270 PF02685 Glucokinase AMD11_RS16280 PF04408 Helicase associated domain (HA2) AMD11_RS16280 PF00271 Helicase conserved C-terminal domain AMD11_RS16280 PF11898 Domain of unknown function (DUF3418) AMD11_RS16280 PF00270 DEAD/DEAH box helicase AMD11_RS16280 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMD11_RS16285 PF00210 Ferritin-like domain AMD11_RS16290 PF09382 RQC domain AMD11_RS16290 PF00270 DEAD/DEAH box helicase AMD11_RS16290 PF16124 RecQ zinc-binding AMD11_RS16290 PF00271 Helicase conserved C-terminal domain AMD11_RS16290 PF00570 HRDC domain AMD11_RS16325 PF00672 HAMP domain AMD11_RS16325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS16325 PF02203 Tar ligand binding domain homologue AMD11_RS16330 PF01810 LysE type translocator AMD11_RS16335 PF03466 LysR substrate binding domain AMD11_RS16335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS16345 PF13581 Histidine kinase-like ATPase domain AMD11_RS16345 PF13426 PAS domain AMD11_RS16345 PF07536 HWE histidine kinase AMD11_RS16350 PF06508 Queuosine biosynthesis protein QueC AMD11_RS16360 PF04055 Radical SAM superfamily AMD11_RS16370 PF00691 OmpA family AMD11_RS16375 PF07676 WD40-like Beta Propeller Repeat AMD11_RS16375 PF04052 TolB amino-terminal domain AMD11_RS16385 PF02472 Biopolymer transport protein ExbD/TolR AMD11_RS16390 PF01618 MotA/TolQ/ExbB proton channel family AMD11_RS16395 PF03061 Thioesterase superfamily AMD11_RS16400 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMD11_RS16400 PF05491 RuvB C-terminal winged helix domain AMD11_RS16400 PF17864 RuvB AAA lid domain AMD11_RS16410 PF02705 K+ potassium transporter AMD11_RS16415 PF01330 RuvA N terminal domain AMD11_RS16415 PF07499 RuvA, C-terminal domain AMD11_RS16420 PF02075 Crossover junction endodeoxyribonuclease RuvC AMD11_RS16425 PF01709 Transcriptional regulator AMD11_RS16440 PF02938 GAD domain AMD11_RS16440 PF00152 tRNA synthetases class II (D, K and N) AMD11_RS16440 PF01336 OB-fold nucleic acid binding domain AMD11_RS16455 PF07690 Major Facilitator Superfamily AMD11_RS16480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS16480 PF03466 LysR substrate binding domain AMD11_RS16490 PF12848 ABC transporter AMD11_RS16490 PF00005 ABC transporter AMD11_RS16495 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16495 PF00593 TonB dependent receptor AMD11_RS16510 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16510 PF00593 TonB dependent receptor AMD11_RS16515 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16515 PF00593 TonB dependent receptor AMD11_RS16520 PF00067 Cytochrome P450 AMD11_RS16525 PF00999 Sodium/hydrogen exchanger family AMD11_RS16525 PF02254 TrkA-N domain AMD11_RS16550 PF00593 TonB dependent receptor AMD11_RS16550 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16550 PF07660 Secretin and TonB N terminus short domain AMD11_RS16560 PF04183 IucA / IucC family AMD11_RS16560 PF06276 Ferric iron reductase FhuF-like transporter AMD11_RS16565 PF07690 Major Facilitator Superfamily AMD11_RS16570 PF04183 IucA / IucC family AMD11_RS16570 PF06276 Ferric iron reductase FhuF-like transporter AMD11_RS16575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD11_RS16575 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD11_RS16590 PF02654 Cobalamin-5-phosphate synthase AMD11_RS16600 PF02277 Phosphoribosyltransferase AMD11_RS16605 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMD11_RS16610 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD11_RS16610 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMD11_RS16615 PF00155 Aminotransferase class I and II AMD11_RS16620 PF17113 Regulatory signalling modulator protein AmpE AMD11_RS16620 PF03186 CobD/Cbib protein AMD11_RS16625 PF12557 Cob(I)alamin adenosyltransferase N terminal AMD11_RS16625 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMD11_RS16640 PF00593 TonB dependent receptor AMD11_RS16640 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16645 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS16645 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS16645 PF17871 AAA lid domain AMD11_RS16645 PF02861 Clp amino terminal domain, pathogenicity island component AMD11_RS16645 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS16650 PF00005 ABC transporter AMD11_RS16655 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS16660 PF09084 NMT1/THI5 like AMD11_RS16665 PF00248 Aldo/keto reductase family AMD11_RS16670 PF00296 Luciferase-like monooxygenase AMD11_RS16675 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16675 PF00593 TonB dependent receptor AMD11_RS16680 PF01541 GIY-YIG catalytic domain AMD11_RS16715 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16715 PF00593 TonB dependent receptor AMD11_RS16720 PF02358 Trehalose-phosphatase AMD11_RS16725 PF00723 Glycosyl hydrolases family 15 AMD11_RS16730 PF00982 Glycosyltransferase family 20 AMD11_RS16735 PF01011 PQQ enzyme repeat AMD11_RS16740 PF02203 Tar ligand binding domain homologue AMD11_RS16740 PF00672 HAMP domain AMD11_RS16740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS16745 PF04134 Protein of unknown function, DUF393 AMD11_RS16755 PF02578 Multi-copper polyphenol oxidoreductase laccase AMD11_RS16760 PF00849 RNA pseudouridylate synthase AMD11_RS16765 PF13525 Outer membrane lipoprotein AMD11_RS16775 PF02540 NAD synthase AMD11_RS16775 PF00795 Carbon-nitrogen hydrolase AMD11_RS16805 PF13406 Transglycosylase SLT domain AMD11_RS16810 PF01526 Tn3 transposase DDE domain AMD11_RS16810 PF13700 Domain of unknown function (DUF4158) AMD11_RS16830 PF01129 NAD:arginine ADP-ribosyltransferase AMD11_RS16850 PF00549 CoA-ligase AMD11_RS16850 PF02629 CoA binding domain AMD11_RS16855 PF08442 ATP-grasp domain AMD11_RS16855 PF00549 CoA-ligase AMD11_RS16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS16860 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS16865 PF00158 Sigma-54 interaction domain AMD11_RS16865 PF00072 Response regulator receiver domain AMD11_RS16865 PF02954 Bacterial regulatory protein, Fis family AMD11_RS16870 PF00437 Type II/IV secretion system protein AMD11_RS16870 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD11_RS16875 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD11_RS16875 PF00437 Type II/IV secretion system protein AMD11_RS16880 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD11_RS16880 PF00437 Type II/IV secretion system protein AMD11_RS16885 PF00114 Pilin (bacterial filament) AMD11_RS16885 PF07963 Prokaryotic N-terminal methylation motif AMD11_RS16890 PF00114 Pilin (bacterial filament) AMD11_RS16890 PF07963 Prokaryotic N-terminal methylation motif AMD11_RS16895 PF00482 Type II secretion system (T2SS), protein F AMD11_RS16900 PF01478 Type IV leader peptidase family AMD11_RS16900 PF06750 Bacterial Peptidase A24 N-terminal domain AMD11_RS16905 PF01121 Dephospho-CoA kinase AMD11_RS16925 PF00665 Integrase core domain AMD11_RS16925 PF13333 Integrase core domain AMD11_RS16925 PF13276 HTH-like domain AMD11_RS16930 PF16736 Single Cache-like AMD11_RS16930 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS16930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS16930 PF00989 PAS fold AMD11_RS16935 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS16935 PF00072 Response regulator receiver domain AMD11_RS16945 PF18030 RimK PreATP-grasp domain AMD11_RS16945 PF08443 RimK-like ATP-grasp domain AMD11_RS16950 PF00128 Alpha amylase, catalytic domain AMD11_RS16950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS17005 PF04002 RadC-like JAB domain AMD11_RS17030 PF00072 Response regulator receiver domain AMD11_RS17030 PF13426 PAS domain AMD11_RS17030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS17035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS17035 PF13426 PAS domain AMD11_RS17035 PF00072 Response regulator receiver domain AMD11_RS17075 PF01527 Transposase AMD11_RS17120 PF13188 PAS domain AMD11_RS17120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS17120 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS17120 PF00072 Response regulator receiver domain AMD11_RS17120 PF08448 PAS fold AMD11_RS17145 PF13676 TIR domain AMD11_RS17160 PF03797 Autotransporter beta-domain AMD11_RS17160 PF00657 GDSL-like Lipase/Acylhydrolase AMD11_RS17170 PF05690 Thiazole biosynthesis protein ThiG AMD11_RS17175 PF02390 Putative methyltransferase AMD11_RS17180 PF03600 Citrate transporter AMD11_RS17180 PF02080 TrkA-C domain AMD11_RS17195 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD11_RS17200 PF01741 Large-conductance mechanosensitive channel, MscL AMD11_RS17215 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS17225 PF00703 Glycosyl hydrolases family 2 AMD11_RS17225 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMD11_RS17225 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD11_RS17230 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD11_RS17230 PF10566 Glycoside hydrolase 97 AMD11_RS17230 PF14508 Glycosyl-hydrolase 97 N-terminal AMD11_RS17240 PF00135 Carboxylesterase family AMD11_RS17245 PF00588 SpoU rRNA Methylase family AMD11_RS17245 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD11_RS17255 PF01433 Peptidase family M1 domain AMD11_RS17255 PF11838 ERAP1-like C-terminal domain AMD11_RS17305 PF00873 AcrB/AcrD/AcrF family AMD11_RS17310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS17310 PF00529 HlyD membrane-fusion protein of T1SS AMD11_RS17315 PF00009 Elongation factor Tu GTP binding domain AMD11_RS17320 PF01507 Phosphoadenosine phosphosulfate reductase family AMD11_RS17325 PF00175 Oxidoreductase NAD-binding domain AMD11_RS17325 PF00258 Flavodoxin AMD11_RS17325 PF00667 FAD binding domain AMD11_RS17330 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD11_RS17330 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD11_RS17335 PF01507 Phosphoadenosine phosphosulfate reductase family AMD11_RS17355 PF00072 Response regulator receiver domain AMD11_RS17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS17355 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS17355 PF01627 Hpt domain AMD11_RS17370 PF03466 LysR substrate binding domain AMD11_RS17370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS17375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD11_RS17375 PF14824 Sirohaem biosynthesis protein central AMD11_RS17375 PF10414 Sirohaem synthase dimerisation region AMD11_RS17380 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS17390 PF01661 Macro domain AMD11_RS17395 PF00274 Fructose-bisphosphate aldolase class-I AMD11_RS17400 PF00224 Pyruvate kinase, barrel domain AMD11_RS17400 PF02887 Pyruvate kinase, alpha/beta domain AMD11_RS17405 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS17410 PF00162 Phosphoglycerate kinase AMD11_RS17430 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD11_RS17430 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD11_RS17440 PF03922 OmpW family AMD11_RS17445 PF03922 OmpW family AMD11_RS17455 PF04273 Putative phosphatase (DUF442) AMD11_RS17455 PF00753 Metallo-beta-lactamase superfamily AMD11_RS17465 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS17470 PF03459 TOBE domain AMD11_RS17470 PF00005 ABC transporter AMD11_RS17505 PF01476 LysM domain AMD11_RS17505 PF03734 L,D-transpeptidase catalytic domain AMD11_RS17510 PF01551 Peptidase family M23 AMD11_RS17510 PF04225 Opacity-associated protein A LysM-like domain AMD11_RS17520 PF00593 TonB dependent receptor AMD11_RS17520 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17535 PF02779 Transketolase, pyrimidine binding domain AMD11_RS17535 PF00456 Transketolase, thiamine diphosphate binding domain AMD11_RS17535 PF02780 Transketolase, C-terminal domain AMD11_RS17540 PF00375 Sodium:dicarboxylate symporter family AMD11_RS17550 PF00092 von Willebrand factor type A domain AMD11_RS17550 PF07584 Aerotolerance regulator N-terminal AMD11_RS17570 PF07726 ATPase family associated with various cellular activities (AAA) AMD11_RS17570 PF17863 AAA lid domain AMD11_RS17575 PF03958 Bacterial type II/III secretion system short domain AMD11_RS17575 PF00263 Bacterial type II and III secretion system protein AMD11_RS17575 PF11741 AMIN domain AMD11_RS17575 PF07660 Secretin and TonB N terminus short domain AMD11_RS17580 PF04351 Pilus assembly protein, PilP AMD11_RS17585 PF04350 Pilus assembly protein, PilO AMD11_RS17590 PF05137 Fimbrial assembly protein (PilN) AMD11_RS17595 PF11104 Type IV pilus assembly protein PilM; AMD11_RS17600 PF17092 Penicillin-binding protein OB-like domain AMD11_RS17600 PF00912 Transglycosylase AMD11_RS17600 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS17610 PF00285 Citrate synthase, C-terminal domain AMD11_RS17615 PF01197 Ribosomal protein L31 AMD11_RS17620 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD11_RS17625 PF00270 DEAD/DEAH box helicase AMD11_RS17625 PF00271 Helicase conserved C-terminal domain AMD11_RS17625 PF17191 RecG wedge domain AMD11_RS17630 PF01042 Endoribonuclease L-PSP AMD11_RS17635 PF04607 Region found in RelA / SpoT proteins AMD11_RS17635 PF02824 TGS domain AMD11_RS17635 PF13291 ACT domain AMD11_RS17640 PF01192 RNA polymerase Rpb6 AMD11_RS17645 PF00625 Guanylate kinase AMD11_RS17650 PF03755 YicC-like family, N-terminal region AMD11_RS17650 PF08340 Domain of unknown function (DUF1732) AMD11_RS17655 PF01138 3' exoribonuclease family, domain 1 AMD11_RS17655 PF03725 3' exoribonuclease family, domain 2 AMD11_RS17665 PF01725 Ham1 family AMD11_RS17670 PF04055 Radical SAM superfamily AMD11_RS17670 PF06969 HemN C-terminal domain AMD11_RS17685 PF00557 Metallopeptidase family M24 AMD11_RS17695 PF05195 Aminopeptidase P, N-terminal domain AMD11_RS17695 PF00557 Metallopeptidase family M24 AMD11_RS17700 PF03695 Uncharacterised protein family (UPF0149) AMD11_RS17710 PF05164 Cell division protein ZapA AMD11_RS17715 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMD11_RS17725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMD11_RS17735 PF13369 Transglutaminase-like superfamily AMD11_RS17740 PF00301 Rubredoxin AMD11_RS17745 PF02581 Thiamine monophosphate synthase AMD11_RS17760 PF00202 Aminotransferase class-III AMD11_RS17765 PF17874 MalT-like TPR region AMD11_RS17765 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS17770 PF00127 Copper binding proteins, plastocyanin/azurin family AMD11_RS17775 PF00155 Aminotransferase class I and II AMD11_RS17785 PF00034 Cytochrome c AMD11_RS17785 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD11_RS17790 PF01593 Flavin containing amine oxidoreductase AMD11_RS17805 PF00202 Aminotransferase class-III AMD11_RS17810 PF00520 Ion transport protein AMD11_RS17810 PF00027 Cyclic nucleotide-binding domain AMD11_RS17825 PF01569 PAP2 superfamily AMD11_RS17830 PF01062 Bestrophin, RFP-TM, chloride channel AMD11_RS17840 PF01225 Mur ligase family, catalytic domain AMD11_RS17840 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS17840 PF08245 Mur ligase middle domain AMD11_RS17850 PF00365 Phosphofructokinase AMD11_RS17860 PF03030 Inorganic H+ pyrophosphatase AMD11_RS17870 PF00719 Inorganic pyrophosphatase AMD11_RS17880 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17880 PF00593 TonB dependent receptor AMD11_RS17885 PF12833 Helix-turn-helix domain AMD11_RS17890 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS17890 PF18500 CadC C-terminal domain 1 AMD11_RS17895 PF01964 Radical SAM ThiC family AMD11_RS17895 PF13667 ThiC-associated domain AMD11_RS17900 PF00593 TonB dependent receptor AMD11_RS17900 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS17905 PF00672 HAMP domain AMD11_RS17915 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMD11_RS17915 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMD11_RS17920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD11_RS17920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD11_RS17920 PF00205 Thiamine pyrophosphate enzyme, central domain AMD11_RS17930 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS17935 PF00682 HMGL-like AMD11_RS17935 PF08502 LeuA allosteric (dimerisation) domain AMD11_RS17940 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD11_RS17945 PF00694 Aconitase C-terminal domain AMD11_RS17950 PF00330 Aconitase family (aconitate hydratase) AMD11_RS17955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS17960 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS17975 PF02321 Outer membrane efflux protein AMD11_RS17980 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMD11_RS17985 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD11_RS18010 PF03949 Malic enzyme, NAD binding domain AMD11_RS18010 PF00390 Malic enzyme, N-terminal domain AMD11_RS18010 PF01515 Phosphate acetyl/butaryl transferase AMD11_RS18015 PF00375 Sodium:dicarboxylate symporter family AMD11_RS18025 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS18025 PF02743 Cache domain AMD11_RS18030 PF07690 Major Facilitator Superfamily AMD11_RS18040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS18040 PF03466 LysR substrate binding domain AMD11_RS18045 PF00248 Aldo/keto reductase family AMD11_RS18060 PF00072 Response regulator receiver domain AMD11_RS18060 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS18070 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS18070 PF08521 Two-component sensor kinase N-terminal AMD11_RS18070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS18075 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS18075 PF00072 Response regulator receiver domain AMD11_RS18085 PF03600 Citrate transporter AMD11_RS18090 PF00106 short chain dehydrogenase AMD11_RS18095 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS18110 PF00128 Alpha amylase, catalytic domain AMD11_RS18125 PF03193 RsgA GTPase AMD11_RS18130 PF00155 Aminotransferase class I and II AMD11_RS18145 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS18145 PF00593 TonB dependent receptor AMD11_RS18150 PF01522 Polysaccharide deacetylase AMD11_RS18155 PF00462 Glutaredoxin AMD11_RS18170 PF01527 Transposase AMD11_RS18190 PF02645 Uncharacterised protein, DegV family COG1307 AMD11_RS18195 PF01327 Polypeptide deformylase AMD11_RS18200 PF03960 ArsC family AMD11_RS18215 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AMD11_RS18220 PF01270 Glycosyl hydrolases family 8 AMD11_RS18225 PF03170 Bacterial cellulose synthase subunit AMD11_RS18230 PF00535 Glycosyl transferase family 2 AMD11_RS18230 PF07238 PilZ domain AMD11_RS18230 PF03552 Cellulose synthase AMD11_RS18245 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD11_RS18245 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMD11_RS18300 PF07702 UTRA domain AMD11_RS18300 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS18310 PF00263 Bacterial type II and III secretion system protein AMD11_RS18310 PF03958 Bacterial type II/III secretion system short domain AMD11_RS18320 PF10741 Type II secretion system (T2SS), protein M subtype b AMD11_RS18325 PF05137 Fimbrial assembly protein (PilN) AMD11_RS18330 PF03934 Type II secretion system (T2SS), protein K AMD11_RS18340 PF07963 Prokaryotic N-terminal methylation motif AMD11_RS18345 PF12019 Type II transport protein GspH AMD11_RS18350 PF08334 Type II secretion system (T2SS), protein G AMD11_RS18355 PF00482 Type II secretion system (T2SS), protein F AMD11_RS18360 PF00437 Type II/IV secretion system protein AMD11_RS18360 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD11_RS18365 PF00082 Subtilase family AMD11_RS18365 PF04151 Bacterial pre-peptidase C-terminal domain AMD11_RS18370 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD11_RS18370 PF05658 Head domain of trimeric autotransporter adhesin AMD11_RS18370 PF03895 YadA-like membrane anchor domain AMD11_RS18370 PF13018 Extended Signal Peptide of Type V secretion system AMD11_RS18375 PF04151 Bacterial pre-peptidase C-terminal domain AMD11_RS18375 PF00082 Subtilase family AMD11_RS18380 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD11_RS18380 PF05658 Head domain of trimeric autotransporter adhesin AMD11_RS18380 PF03895 YadA-like membrane anchor domain AMD11_RS18380 PF13018 Extended Signal Peptide of Type V secretion system AMD11_RS18390 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMD11_RS18390 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMD11_RS18390 PF02769 AIR synthase related protein, C-terminal domain AMD11_RS18395 PF10411 Disulfide bond isomerase protein N-terminus AMD11_RS18395 PF13098 Thioredoxin-like domain AMD11_RS18400 PF00589 Phage integrase family AMD11_RS18400 PF02899 Phage integrase, N-terminal SAM-like domain AMD11_RS18415 PF03739 Lipopolysaccharide export system permease LptF/LptG AMD11_RS18425 PF00883 Cytosol aminopeptidase family, catalytic domain AMD11_RS18425 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD11_RS18440 PF10458 Valyl tRNA synthetase tRNA binding arm AMD11_RS18440 PF00133 tRNA synthetases class I (I, L, M and V) AMD11_RS18440 PF08264 Anticodon-binding domain of tRNA AMD11_RS18445 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS18445 PF00593 TonB dependent receptor AMD11_RS18450 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AMD11_RS18450 PF01464 Transglycosylase SLT domain AMD11_RS18455 PF00544 Pectate lyase AMD11_RS18470 PF01066 CDP-alcohol phosphatidyltransferase AMD11_RS18480 PF04073 Aminoacyl-tRNA editing domain AMD11_RS18480 PF03129 Anticodon binding domain AMD11_RS18480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD11_RS18485 PF00816 H-NS histone family AMD11_RS18495 PF02405 Permease MlaE AMD11_RS18500 PF00005 ABC transporter AMD11_RS18505 PF02470 MlaD protein AMD11_RS18505 PF03886 ABC-type transport auxiliary lipoprotein component AMD11_RS18525 PF05045 Rhamnan synthesis protein F AMD11_RS18525 PF14307 Glycosyltransferase WbsX AMD11_RS18530 PF01144 Coenzyme A transferase AMD11_RS18535 PF01144 Coenzyme A transferase AMD11_RS18540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD11_RS18540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD11_RS18540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD11_RS18540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD11_RS18545 PF00483 Nucleotidyl transferase AMD11_RS18545 PF01050 Mannose-6-phosphate isomerase AMD11_RS18550 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD11_RS18550 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD11_RS18550 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD11_RS18555 PF04321 RmlD substrate binding domain AMD11_RS18560 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMD11_RS18565 PF00483 Nucleotidyl transferase AMD11_RS18570 PF16363 GDP-mannose 4,6 dehydratase AMD11_RS18575 PF01012 Electron transfer flavoprotein domain AMD11_RS18580 PF01012 Electron transfer flavoprotein domain AMD11_RS18580 PF00766 Electron transfer flavoprotein FAD-binding domain AMD11_RS18590 PF01040 UbiA prenyltransferase family AMD11_RS18595 PF01565 FAD binding domain AMD11_RS18595 PF04030 D-arabinono-1,4-lactone oxidase AMD11_RS18600 PF00106 short chain dehydrogenase AMD11_RS18610 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS18615 PF01593 Flavin containing amine oxidoreductase AMD11_RS18640 PF00535 Glycosyl transferase family 2 AMD11_RS18650 PF00005 ABC transporter AMD11_RS18650 PF14524 Wzt C-terminal domain AMD11_RS18660 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD11_RS18665 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS18665 PF00571 CBS domain AMD11_RS18685 PF00437 Type II/IV secretion system protein AMD11_RS18695 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS18695 PF14497 Glutathione S-transferase, C-terminal domain AMD11_RS18705 PF00271 Helicase conserved C-terminal domain AMD11_RS18705 PF00270 DEAD/DEAH box helicase AMD11_RS18715 PF00593 TonB dependent receptor AMD11_RS18715 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS18720 PF01242 6-pyruvoyl tetrahydropterin synthase AMD11_RS18740 PF13185 GAF domain AMD11_RS18750 PF00756 Putative esterase AMD11_RS18755 PF00593 TonB dependent receptor AMD11_RS18755 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS18760 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS18765 PF00817 impB/mucB/samB family AMD11_RS18765 PF11799 impB/mucB/samB family C-terminal domain AMD11_RS18770 PF07977 FabA-like domain AMD11_RS18775 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD11_RS18775 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD11_RS18785 PF01432 Peptidase family M3 AMD11_RS18800 PF07732 Multicopper oxidase AMD11_RS18800 PF07731 Multicopper oxidase AMD11_RS18800 PF00394 Multicopper oxidase AMD11_RS18805 PF05275 Copper resistance protein B precursor (CopB) AMD11_RS18810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS18835 PF01380 SIS domain AMD11_RS18840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS18845 PF00005 ABC transporter AMD11_RS18845 PF02687 FtsX-like permease family AMD11_RS18845 PF12704 MacB-like periplasmic core domain AMD11_RS18850 PF12704 MacB-like periplasmic core domain AMD11_RS18850 PF02687 FtsX-like permease family AMD11_RS18850 PF00005 ABC transporter AMD11_RS18855 PF12704 MacB-like periplasmic core domain AMD11_RS18855 PF02687 FtsX-like permease family AMD11_RS18865 PF02954 Bacterial regulatory protein, Fis family AMD11_RS18865 PF00072 Response regulator receiver domain AMD11_RS18865 PF00158 Sigma-54 interaction domain AMD11_RS18870 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS18870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS18875 PF12804 MobA-like NTP transferase domain AMD11_RS18875 PF14602 Hexapeptide repeat of succinyl-transferase AMD11_RS18875 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS18890 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMD11_RS18890 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMD11_RS18895 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD11_RS18895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS18900 PF00231 ATP synthase AMD11_RS18905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS18905 PF00306 ATP synthase alpha/beta chain, C terminal domain AMD11_RS18905 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD11_RS18910 PF00213 ATP synthase delta (OSCP) subunit AMD11_RS18915 PF00430 ATP synthase B/B' CF(0) AMD11_RS18920 PF00137 ATP synthase subunit C AMD11_RS18925 PF00119 ATP synthase A chain AMD11_RS18945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD11_RS18945 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS18955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD11_RS18955 PF00364 Biotin-requiring enzyme AMD11_RS18955 PF02817 e3 binding domain AMD11_RS18995 PF03180 NLPA lipoprotein AMD11_RS19000 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS19005 PF09383 NIL domain AMD11_RS19005 PF00005 ABC transporter AMD11_RS19010 PF00892 EamA-like transporter family AMD11_RS19015 PF04461 Protein of unknown function (DUF520) AMD11_RS19025 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMD11_RS19025 PF01627 Hpt domain AMD11_RS19025 PF00989 PAS fold AMD11_RS19025 PF00072 Response regulator receiver domain AMD11_RS19025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS19025 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS19050 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS19055 PF00849 RNA pseudouridylate synthase AMD11_RS19055 PF01479 S4 domain AMD11_RS19060 PF05175 Methyltransferase small domain AMD11_RS19060 PF08468 Methyltransferase small domain N-terminal AMD11_RS19070 PF07995 Glucose / Sorbosone dehydrogenase AMD11_RS19080 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS19080 PF00989 PAS fold AMD11_RS19080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS19100 PF00842 Alanine racemase, C-terminal domain AMD11_RS19100 PF01168 Alanine racemase, N-terminal domain AMD11_RS19105 PF01266 FAD dependent oxidoreductase AMD11_RS19110 PF01037 Lrp/AsnC ligand binding domain AMD11_RS19120 PF01641 SelR domain AMD11_RS19130 PF01618 MotA/TolQ/ExbB proton channel family AMD11_RS19135 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD11_RS19135 PF00691 OmpA family AMD11_RS19160 PF01061 ABC-2 type transporter AMD11_RS19165 PF00005 ABC transporter AMD11_RS19170 PF00999 Sodium/hydrogen exchanger family AMD11_RS19175 PF02469 Fasciclin domain AMD11_RS19180 PF03167 Uracil DNA glycosylase superfamily AMD11_RS19190 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD11_RS19200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS19200 PF03466 LysR substrate binding domain AMD11_RS19205 PF03358 NADPH-dependent FMN reductase AMD11_RS19210 PF00248 Aldo/keto reductase family AMD11_RS19220 PF05649 Peptidase family M13 AMD11_RS19220 PF01431 Peptidase family M13 AMD11_RS19240 PF13520 Amino acid permease AMD11_RS19250 PF04397 LytTr DNA-binding domain AMD11_RS19250 PF00072 Response regulator receiver domain AMD11_RS19255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS19255 PF02743 Cache domain AMD11_RS19255 PF00672 HAMP domain AMD11_RS19255 PF06580 Histidine kinase AMD11_RS19270 PF05974 Domain of unknown function (DUF892) AMD11_RS19275 PF05067 Manganese containing catalase AMD11_RS19295 PF03705 CheR methyltransferase, all-alpha domain AMD11_RS19295 PF08448 PAS fold AMD11_RS19295 PF01339 CheB methylesterase AMD11_RS19295 PF01739 CheR methyltransferase, SAM binding domain AMD11_RS19310 PF00158 Sigma-54 interaction domain AMD11_RS19310 PF00072 Response regulator receiver domain AMD11_RS19310 PF02954 Bacterial regulatory protein, Fis family AMD11_RS19320 PF01654 Cytochrome bd terminal oxidase subunit I AMD11_RS19325 PF02322 Cytochrome bd terminal oxidase subunit II AMD11_RS19345 PF16363 GDP-mannose 4,6 dehydratase AMD11_RS19355 PF03275 UDP-galactopyranose mutase AMD11_RS19365 PF00005 ABC transporter AMD11_RS19365 PF00664 ABC transporter transmembrane region AMD11_RS19380 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS19380 PF13823 Alcohol dehydrogenase GroES-associated AMD11_RS19380 PF00107 Zinc-binding dehydrogenase AMD11_RS19425 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS19425 PF00593 TonB dependent receptor AMD11_RS19440 PF00005 ABC transporter AMD11_RS19450 PF03466 LysR substrate binding domain AMD11_RS19450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS19455 PF01042 Endoribonuclease L-PSP AMD11_RS19465 PF01527 Transposase AMD11_RS19485 PF02203 Tar ligand binding domain homologue AMD11_RS19485 PF00672 HAMP domain AMD11_RS19485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS19500 PF03466 LysR substrate binding domain AMD11_RS19500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS19505 PF02525 Flavodoxin-like fold AMD11_RS19545 PF00557 Metallopeptidase family M24 AMD11_RS19565 PF04546 Sigma-70, non-essential region AMD11_RS19565 PF03979 Sigma-70 factor, region 1.1 AMD11_RS19565 PF00140 Sigma-70 factor, region 1.2 AMD11_RS19565 PF04542 Sigma-70 region 2 AMD11_RS19565 PF04539 Sigma-70 region 3 AMD11_RS19565 PF04545 Sigma-70, region 4 AMD11_RS19570 PF02580 D-Tyr-tRNA(Tyr) deacylase AMD11_RS19575 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD11_RS19590 PF00925 GTP cyclohydrolase II AMD11_RS19610 PF00535 Glycosyl transferase family 2 AMD11_RS19625 PF01189 16S rRNA methyltransferase RsmB/F AMD11_RS19625 PF01029 NusB family AMD11_RS19630 PF00551 Formyl transferase AMD11_RS19630 PF02911 Formyl transferase, C-terminal domain AMD11_RS19635 PF01327 Polypeptide deformylase AMD11_RS19640 PF01476 LysM domain AMD11_RS19645 PF17782 DprA winged helix domain AMD11_RS19645 PF02481 DNA recombination-mediator protein A AMD11_RS19650 PF04361 Protein of unknown function (DUF494) AMD11_RS19655 PF07963 Prokaryotic N-terminal methylation motif AMD11_RS19655 PF00114 Pilin (bacterial filament) AMD11_RS19665 PF13368 Topoisomerase C-terminal repeat AMD11_RS19665 PF01751 Toprim domain AMD11_RS19665 PF01131 DNA topoisomerase AMD11_RS19670 PF01300 Telomere recombination AMD11_RS19695 PF01343 Peptidase family S49 AMD11_RS19700 PF01554 MatE AMD11_RS19720 PF00271 Helicase conserved C-terminal domain AMD11_RS19720 PF17764 3′ DNA-binding domain (3′BD) AMD11_RS19720 PF18074 Primosomal protein N C-terminal domain AMD11_RS19720 PF00270 DEAD/DEAH box helicase AMD11_RS19720 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMD11_RS19725 PF13417 Glutathione S-transferase, N-terminal domain AMD11_RS19725 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS19740 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS19745 PF03458 UPF0126 domain AMD11_RS19750 PF04542 Sigma-70 region 2 AMD11_RS19750 PF04545 Sigma-70, region 4 AMD11_RS19755 PF03167 Uracil DNA glycosylase superfamily AMD11_RS19760 PF00072 Response regulator receiver domain AMD11_RS19760 PF01339 CheB methylesterase AMD11_RS19765 PF18075 FtsX extracellular domain AMD11_RS19770 PF00005 ABC transporter AMD11_RS19775 PF00270 DEAD/DEAH box helicase AMD11_RS19775 PF00271 Helicase conserved C-terminal domain AMD11_RS19775 PF12300 ATP-dependent RNA helicase RhlB AMD11_RS19780 PF00085 Thioredoxin AMD11_RS19785 PF07498 Rho termination factor, N-terminal domain AMD11_RS19785 PF07497 Rho termination factor, RNA-binding domain AMD11_RS19785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS19790 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMD11_RS19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS19795 PF03466 LysR substrate binding domain AMD11_RS19805 PF03971 Monomeric isocitrate dehydrogenase AMD11_RS19820 PF09704 CRISPR-associated protein (Cas_Cas5) AMD11_RS19840 PF01867 CRISPR associated protein Cas1 AMD11_RS19845 PF09827 CRISPR associated protein Cas2 AMD11_RS19855 PF04972 BON domain AMD11_RS19855 PF01476 LysM domain AMD11_RS19860 PF14489 QueF-like protein AMD11_RS19860 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMD11_RS19865 PF07687 Peptidase dimerisation domain AMD11_RS19865 PF01546 Peptidase family M20/M25/M40 AMD11_RS19870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS19875 PF00873 AcrB/AcrD/AcrF family AMD11_RS19880 PF00873 AcrB/AcrD/AcrF family AMD11_RS19885 PF07063 Domain of unknown function (DUF1338) AMD11_RS19925 PF01427 D-ala-D-ala dipeptidase AMD11_RS19930 PF01510 N-acetylmuramoyl-L-alanine amidase AMD11_RS19940 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD11_RS19940 PF13378 Enolase C-terminal domain-like AMD11_RS19950 PF13520 Amino acid permease AMD11_RS19965 PF05360 yiaA/B two helix domain AMD11_RS19970 PF07995 Glucose / Sorbosone dehydrogenase AMD11_RS19975 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS19975 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS19975 PF14310 Fibronectin type III-like domain AMD11_RS19980 PF02152 Dihydroneopterin aldolase AMD11_RS19985 PF00814 Glycoprotease family AMD11_RS19990 PF01165 Ribosomal protein S21 AMD11_RS19995 PF09424 Yqey-like protein AMD11_RS20000 PF03631 Virulence factor BrkB AMD11_RS20005 PF10410 DnaB-helicase binding domain of primase AMD11_RS20005 PF08278 DNA primase DnaG DnaB-binding AMD11_RS20005 PF08275 DNA primase catalytic core, N-terminal domain AMD11_RS20005 PF01807 CHC2 zinc finger AMD11_RS20010 PF13593 SBF-like CPA transporter family (DUF4137) AMD11_RS20020 PF01040 UbiA prenyltransferase family AMD11_RS20045 PF00510 Cytochrome c oxidase subunit III AMD11_RS20050 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMD11_RS20055 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD11_RS20060 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD11_RS20060 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMD11_RS20070 PF00171 Aldehyde dehydrogenase family AMD11_RS20070 PF01619 Proline dehydrogenase AMD11_RS20070 PF14850 DNA-binding domain of Proline dehydrogenase AMD11_RS20070 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD11_RS20105 PF00579 tRNA synthetases class I (W and Y) AMD11_RS20110 PF01551 Peptidase family M23 AMD11_RS20110 PF04225 Opacity-associated protein A LysM-like domain AMD11_RS20115 PF03702 Anhydro-N-acetylmuramic acid kinase AMD11_RS20125 PF07690 Major Facilitator Superfamily AMD11_RS20130 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS20135 PF00156 Phosphoribosyl transferase domain AMD11_RS20145 PF13614 AAA domain AMD11_RS20150 PF17762 HTH domain found in ParB protein AMD11_RS20150 PF02195 ParB-like nuclease domain AMD11_RS20160 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS20165 PF00535 Glycosyl transferase family 2 AMD11_RS20180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD11_RS20180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD11_RS20180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD11_RS20180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD11_RS20185 PF00692 dUTPase AMD11_RS20190 PF02441 Flavoprotein AMD11_RS20190 PF04127 DNA / pantothenate metabolism flavoprotein AMD11_RS20195 PF04002 RadC-like JAB domain AMD11_RS20200 PF00750 tRNA synthetases class I (R) AMD11_RS20200 PF03485 Arginyl tRNA synthetase N terminal domain AMD11_RS20200 PF05746 DALR anticodon binding domain AMD11_RS20215 PF00106 short chain dehydrogenase AMD11_RS20220 PF01757 Acyltransferase family AMD11_RS20225 PF03033 Glycosyltransferase family 28 N-terminal domain AMD11_RS20230 PF00975 Thioesterase domain AMD11_RS20230 PF00550 Phosphopantetheine attachment site AMD11_RS20230 PF00668 Condensation domain AMD11_RS20230 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS20230 PF00501 AMP-binding enzyme AMD11_RS20240 PF17944 Arginine decarboxylase C-terminal helical extension AMD11_RS20240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD11_RS20240 PF17810 Arginine decarboxylase helical bundle domain AMD11_RS20245 PF17284 Spermidine synthase tetramerisation domain AMD11_RS20275 PF00543 Nitrogen regulatory protein P-II AMD11_RS20280 PF04380 Membrane fusogenic activity AMD11_RS20285 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMD11_RS20285 PF01078 Magnesium chelatase, subunit ChlI AMD11_RS20320 PF13361 UvrD-like helicase C-terminal domain AMD11_RS20320 PF00570 HRDC domain AMD11_RS20320 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS20335 PF01527 Transposase AMD11_RS20380 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMD11_RS20380 PF01078 Magnesium chelatase, subunit ChlI AMD11_RS20395 PF12792 CSS motif domain associated with EAL AMD11_RS20395 PF00563 EAL domain AMD11_RS20400 PF00487 Fatty acid desaturase AMD11_RS20405 PF00175 Oxidoreductase NAD-binding domain AMD11_RS20405 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS20405 PF00970 Oxidoreductase FAD-binding domain AMD11_RS20410 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS20430 PF01139 tRNA-splicing ligase RtcB AMD11_RS20470 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS20470 PF08338 Domain of unknown function (DUF1731) AMD11_RS20475 PF00072 Response regulator receiver domain AMD11_RS20475 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS20480 PF08521 Two-component sensor kinase N-terminal AMD11_RS20480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS20480 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS20500 PF00595 PDZ domain AMD11_RS20520 PF01594 AI-2E family transporter AMD11_RS20525 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS20530 PF00883 Cytosol aminopeptidase family, catalytic domain AMD11_RS20530 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD11_RS20540 PF04542 Sigma-70 region 2 AMD11_RS20540 PF08281 Sigma-70, region 4 AMD11_RS20545 PF00199 Catalase AMD11_RS20560 PF00072 Response regulator receiver domain AMD11_RS20560 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS20565 PF07730 Histidine kinase AMD11_RS20570 PF13533 Biotin-lipoyl like AMD11_RS20575 PF00005 ABC transporter AMD11_RS20600 PF00892 EamA-like transporter family AMD11_RS20615 PF00753 Metallo-beta-lactamase superfamily AMD11_RS20620 PF00579 tRNA synthetases class I (W and Y) AMD11_RS20625 PF05532 CsbD-like AMD11_RS20640 PF00491 Arginase family AMD11_RS20665 PF02223 Thymidylate kinase AMD11_RS20680 PF03309 Type III pantothenate kinase AMD11_RS20685 PF08279 HTH domain AMD11_RS20685 PF03099 Biotin/lipoate A/B protein ligase family AMD11_RS20685 PF02237 Biotin protein ligase C terminal domain AMD11_RS20695 PF06167 Glucose-regulated metallo-peptidase M90 AMD11_RS20710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS20715 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS20715 PF00072 Response regulator receiver domain AMD11_RS20725 PF01207 Dihydrouridine synthase (Dus) AMD11_RS20745 PF13307 Helicase C-terminal domain AMD11_RS20745 PF06733 DEAD_2 AMD11_RS20760 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMD11_RS20760 PF01488 Shikimate / quinate 5-dehydrogenase AMD11_RS20760 PF08501 Shikimate dehydrogenase substrate binding domain AMD11_RS20770 PF00175 Oxidoreductase NAD-binding domain AMD11_RS20770 PF00258 Flavodoxin AMD11_RS20770 PF00667 FAD binding domain AMD11_RS20780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS20780 PF03466 LysR substrate binding domain AMD11_RS20790 PF00490 Delta-aminolevulinic acid dehydratase AMD11_RS20815 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD11_RS20815 PF00326 Prolyl oligopeptidase family AMD11_RS20820 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS20820 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS20845 PF04820 Tryptophan halogenase AMD11_RS20860 PF00005 ABC transporter AMD11_RS20870 PF01381 Helix-turn-helix AMD11_RS20880 PF01229 Glycosyl hydrolases family 39 AMD11_RS20885 PF02583 Metal-sensitive transcriptional repressor AMD11_RS20890 PF16916 Dimerisation domain of Zinc Transporter AMD11_RS20890 PF01545 Cation efflux family AMD11_RS20900 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS20900 PF00593 TonB dependent receptor AMD11_RS20910 PF01965 DJ-1/PfpI family AMD11_RS20910 PF12833 Helix-turn-helix domain AMD11_RS20915 PF00175 Oxidoreductase NAD-binding domain AMD11_RS20915 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS20915 PF00970 Oxidoreductase FAD-binding domain AMD11_RS20920 PF00005 ABC transporter AMD11_RS20925 PF01061 ABC-2 type transporter AMD11_RS20935 PF02558 Ketopantoate reductase PanE/ApbA AMD11_RS20935 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMD11_RS20965 PF00268 Ribonucleotide reductase, small chain AMD11_RS20970 PF02867 Ribonucleotide reductase, barrel domain AMD11_RS20970 PF00317 Ribonucleotide reductase, all-alpha domain AMD11_RS20970 PF03477 ATP cone domain AMD11_RS20980 PF00583 Acetyltransferase (GNAT) family AMD11_RS20980 PF13607 Succinyl-CoA ligase like flavodoxin domain AMD11_RS20980 PF13380 CoA binding domain AMD11_RS20985 PF03448 MgtE intracellular N domain AMD11_RS20985 PF00571 CBS domain AMD11_RS20985 PF01769 Divalent cation transporter AMD11_RS20990 PF00194 Eukaryotic-type carbonic anhydrase AMD11_RS20995 PF02254 TrkA-N domain AMD11_RS20995 PF00999 Sodium/hydrogen exchanger family AMD11_RS21000 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD11_RS21000 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD11_RS21005 PF00723 Glycosyl hydrolases family 15 AMD11_RS21020 PF05166 YcgL domain AMD11_RS21025 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD11_RS21025 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD11_RS21035 PF00535 Glycosyl transferase family 2 AMD11_RS21090 PF07977 FabA-like domain AMD11_RS21095 PF01553 Acyltransferase AMD11_RS21105 PF00550 Phosphopantetheine attachment site AMD11_RS21110 PF04820 Tryptophan halogenase AMD11_RS21130 PF00326 Prolyl oligopeptidase family AMD11_RS21130 PF07676 WD40-like Beta Propeller Repeat AMD11_RS21145 PF01218 Coproporphyrinogen III oxidase AMD11_RS21150 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD11_RS21150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD11_RS21150 PF00476 DNA polymerase family A AMD11_RS21150 PF01612 3'-5' exonuclease AMD11_RS21160 PF06812 ImpA, N-terminal, type VI secretion system AMD11_RS21180 PF03793 PASTA domain AMD11_RS21180 PF00069 Protein kinase domain AMD11_RS21195 PF06761 Intracellular multiplication and human macrophage-killing AMD11_RS21195 PF14331 ImcF-related N-terminal domain AMD11_RS21195 PF06744 Type VI secretion protein IcmF C-terminal AMD11_RS21205 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AMD11_RS21220 PF04717 Type VI secretion system, phage-baseplate injector AMD11_RS21235 PF00069 Protein kinase domain AMD11_RS21235 PF03793 PASTA domain AMD11_RS21245 PF08281 Sigma-70, region 4 AMD11_RS21245 PF04542 Sigma-70 region 2 AMD11_RS21260 PF00328 Histidine phosphatase superfamily (branch 2) AMD11_RS21290 PF17871 AAA lid domain AMD11_RS21290 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS21290 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS21290 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS21300 PF05947 Type VI secretion system, TssF AMD11_RS21305 PF04965 Gene 25-like lysozyme AMD11_RS21310 PF07024 ImpE protein AMD11_RS21315 PF05638 Type VI secretion system effector, Hcp AMD11_RS21320 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMD11_RS21325 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMD11_RS21340 PF12464 Maltose acetyltransferase AMD11_RS21340 PF14602 Hexapeptide repeat of succinyl-transferase AMD11_RS21345 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS21345 PF13361 UvrD-like helicase C-terminal domain AMD11_RS21360 PF13091 PLD-like domain AMD11_RS21360 PF13396 Phospholipase_D-nuclease N-terminal AMD11_RS21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS21365 PF03466 LysR substrate binding domain AMD11_RS21370 PF03737 Aldolase/RraA AMD11_RS21375 PF04303 PrpF protein AMD11_RS21380 PF04909 Amidohydrolase AMD11_RS21385 PF00471 Ribosomal protein L33 AMD11_RS21390 PF00830 Ribosomal L28 family AMD11_RS21395 PF00873 AcrB/AcrD/AcrF family AMD11_RS21400 PF13533 Biotin-lipoyl like AMD11_RS21420 PF02527 rRNA small subunit methyltransferase G AMD11_RS21425 PF09423 PhoD-like phosphatase AMD11_RS21425 PF16655 PhoD-like phosphatase, N-terminal domain AMD11_RS21430 PF09423 PhoD-like phosphatase AMD11_RS21430 PF16655 PhoD-like phosphatase, N-terminal domain AMD11_RS21435 PF01648 4'-phosphopantetheinyl transferase superfamily AMD11_RS21445 PF04226 Transglycosylase associated protein AMD11_RS21455 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS21460 PF00480 ROK family AMD11_RS21470 PF09312 SurA N-terminal domain AMD11_RS21480 PF00474 Sodium:solute symporter family AMD11_RS21485 PF04341 Protein of unknown function, DUF485 AMD11_RS21495 PF00501 AMP-binding enzyme AMD11_RS21495 PF16177 Acetyl-coenzyme A synthetase N-terminus AMD11_RS21495 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS21500 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS21500 PF00072 Response regulator receiver domain AMD11_RS21525 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD11_RS21525 PF04616 Glycosyl hydrolases family 43 AMD11_RS21535 PF00248 Aldo/keto reductase family AMD11_RS21550 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD11_RS21555 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD11_RS21555 PF13378 Enolase C-terminal domain-like AMD11_RS21565 PF05336 L-rhamnose mutarotase AMD11_RS21570 PF07690 Major Facilitator Superfamily AMD11_RS21575 PF09339 IclR helix-turn-helix domain AMD11_RS21575 PF01614 Bacterial transcriptional regulator AMD11_RS21580 PF02659 Putative manganese efflux pump AMD11_RS21585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS21585 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS21600 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AMD11_RS21600 PF06165 Glycosyltransferase family 36 AMD11_RS21615 PF13570 PQQ-like domain AMD11_RS21615 PF13360 PQQ-like domain AMD11_RS21615 PF01011 PQQ enzyme repeat AMD11_RS21635 PF04357 TamB, inner membrane protein subunit of TAM complex AMD11_RS21640 PF01103 Surface antigen AMD11_RS21640 PF17243 POTRA domain TamA domain 1 AMD11_RS21670 PF00664 ABC transporter transmembrane region AMD11_RS21670 PF00005 ABC transporter AMD11_RS21670 PF03412 Peptidase C39 family AMD11_RS21675 PF02092 Glycyl-tRNA synthetase beta subunit AMD11_RS21675 PF05746 DALR anticodon binding domain AMD11_RS21680 PF02091 Glycyl-tRNA synthetase alpha subunit AMD11_RS21685 PF00437 Type II/IV secretion system protein AMD11_RS21685 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD11_RS21695 PF00958 GMP synthase C terminal domain AMD11_RS21695 PF00117 Glutamine amidotransferase class-I AMD11_RS21705 PF00902 Sec-independent protein translocase protein (TatC) AMD11_RS21710 PF02416 mttA/Hcf106 family AMD11_RS21715 PF02416 mttA/Hcf106 family AMD11_RS21725 PF00762 Ferrochelatase AMD11_RS21730 PF12697 Alpha/beta hydrolase family AMD11_RS21745 PF04381 Putative exonuclease, RdgC AMD11_RS21750 PF01171 PP-loop family AMD11_RS21760 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS21765 PF07488 Glycosyl hydrolase family 67 middle domain AMD11_RS21765 PF03648 Glycosyl hydrolase family 67 N-terminus AMD11_RS21765 PF07477 Glycosyl hydrolase family 67 C-terminus AMD11_RS21775 PF13378 Enolase C-terminal domain-like AMD11_RS21775 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD11_RS21780 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD11_RS21780 PF04616 Glycosyl hydrolases family 43 AMD11_RS21785 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS21785 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS21785 PF07691 PA14 domain AMD11_RS21785 PF14310 Fibronectin type III-like domain AMD11_RS21790 PF01232 Mannitol dehydrogenase Rossmann domain AMD11_RS21790 PF08125 Mannitol dehydrogenase C-terminal domain AMD11_RS21815 PF00171 Aldehyde dehydrogenase family AMD11_RS21840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD11_RS21840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD11_RS21865 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD11_RS21870 PF00331 Glycosyl hydrolase family 10 AMD11_RS21875 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD11_RS21875 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD11_RS21875 PF00703 Glycosyl hydrolases family 2 AMD11_RS21875 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD11_RS21875 PF16355 Domain of unknown function (DUF4982) AMD11_RS21880 PF02614 Glucuronate isomerase AMD11_RS21885 PF03422 Carbohydrate binding module (family 6) AMD11_RS21885 PF00553 Cellulose binding domain AMD11_RS21885 PF00331 Glycosyl hydrolase family 10 AMD11_RS21900 PF00553 Cellulose binding domain AMD11_RS21900 PF03422 Carbohydrate binding module (family 6) AMD11_RS21900 PF00331 Glycosyl hydrolase family 10 AMD11_RS21920 PF04616 Glycosyl hydrolases family 43 AMD11_RS21955 PF08659 KR domain AMD11_RS21955 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD11_RS21955 PF00698 Acyl transferase domain AMD11_RS21955 PF00550 Phosphopantetheine attachment site AMD11_RS21955 PF14765 Polyketide synthase dehydratase AMD11_RS21955 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS21955 PF00107 Zinc-binding dehydrogenase AMD11_RS21955 PF16197 Ketoacyl-synthetase C-terminal extension AMD11_RS21955 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD11_RS21960 PF01553 Acyltransferase AMD11_RS21970 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS21990 PF04820 Tryptophan halogenase AMD11_RS21995 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD11_RS22000 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMD11_RS22005 PF04337 Protein of unknown function, DUF480 AMD11_RS22020 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS22020 PF13361 UvrD-like helicase C-terminal domain AMD11_RS22025 PF00265 Thymidine kinase AMD11_RS22030 PF01590 GAF domain AMD11_RS22030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS22030 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS22030 PF08446 PAS fold AMD11_RS22030 PF00360 Phytochrome region AMD11_RS22035 PF04349 Periplasmic glucan biosynthesis protein, MdoG AMD11_RS22045 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD11_RS22045 PF06827 Zinc finger found in FPG and IleRS AMD11_RS22045 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD11_RS22080 PF03594 Benzoate membrane transport protein AMD11_RS22085 PF01590 GAF domain AMD11_RS22085 PF08446 PAS fold AMD11_RS22085 PF13426 PAS domain AMD11_RS22085 PF00360 Phytochrome region AMD11_RS22090 PF01126 Heme oxygenase AMD11_RS22095 PF07690 Major Facilitator Superfamily AMD11_RS22100 PF01263 Aldose 1-epimerase AMD11_RS22110 PF02810 SEC-C motif AMD11_RS22115 PF01925 Sulfite exporter TauE/SafE AMD11_RS22135 PF01227 GTP cyclohydrolase I AMD11_RS22145 PF07869 Protein of unknown function (DUF1656) AMD11_RS22150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD11_RS22150 PF00529 HlyD membrane-fusion protein of T1SS AMD11_RS22155 PF02321 Outer membrane efflux protein AMD11_RS22160 PF04632 Fusaric acid resistance protein family AMD11_RS22165 PF00083 Sugar (and other) transporter AMD11_RS22170 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMD11_RS22175 PF13091 PLD-like domain AMD11_RS22175 PF13396 Phospholipase_D-nuclease N-terminal AMD11_RS22200 PF01850 PIN domain AMD11_RS22225 PF00849 RNA pseudouridylate synthase AMD11_RS22260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD11_RS22260 PF00289 Biotin carboxylase, N-terminal domain AMD11_RS22260 PF02785 Biotin carboxylase C-terminal domain AMD11_RS22265 PF01425 Amidase AMD11_RS22295 PF13538 UvrD-like helicase C-terminal domain AMD11_RS22300 PF13361 UvrD-like helicase C-terminal domain AMD11_RS22300 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS22300 PF12705 PD-(D/E)XK nuclease superfamily AMD11_RS22305 PF17946 RecC C-terminal domain AMD11_RS22320 PF00005 ABC transporter AMD11_RS22325 PF02405 Permease MlaE AMD11_RS22330 PF02470 MlaD protein AMD11_RS22335 PF05494 MlaC protein AMD11_RS22345 PF04333 MlaA lipoprotein AMD11_RS22355 PF00255 Glutathione peroxidase AMD11_RS22365 PF02646 RmuC family AMD11_RS22370 PF00107 Zinc-binding dehydrogenase AMD11_RS22370 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS22375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS22375 PF03466 LysR substrate binding domain AMD11_RS22385 PF13417 Glutathione S-transferase, N-terminal domain AMD11_RS22385 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS22395 PF13520 Amino acid permease AMD11_RS22400 PF07971 Glycosyl hydrolase family 92 AMD11_RS22400 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD11_RS22405 PF10947 Protein of unknown function (DUF2628) AMD11_RS22410 PF00990 Diguanylate cyclase, GGDEF domain AMD11_RS22415 PF05651 Putative sugar diacid recognition AMD11_RS22415 PF17853 GGDEF-like domain AMD11_RS22415 PF13556 PucR C-terminal helix-turn-helix domain AMD11_RS22420 PF02595 Glycerate kinase family AMD11_RS22425 PF07690 Major Facilitator Superfamily AMD11_RS22440 PF10672 S-adenosylmethionine-dependent methyltransferase AMD11_RS22440 PF17785 PUA-like domain AMD11_RS22445 PF03741 Integral membrane protein TerC family AMD11_RS22450 PF01694 Rhomboid family AMD11_RS22455 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD11_RS22465 PF01569 PAP2 superfamily AMD11_RS22470 PF01926 50S ribosome-binding GTPase AMD11_RS22470 PF10396 GTP-binding protein TrmE N-terminus AMD11_RS22470 PF12631 MnmE helical domain AMD11_RS22475 PF01522 Polysaccharide deacetylase AMD11_RS22485 PF14849 YidC periplasmic domain AMD11_RS22485 PF02096 60Kd inner membrane protein AMD11_RS22490 PF00825 Ribonuclease P AMD11_RS22495 PF00468 Ribosomal protein L34