AMD11_RS00045 PF00204 DNA gyrase B AMD11_RS00045 PF01751 Toprim domain AMD11_RS00075 PF02472 Biopolymer transport protein ExbD/TolR AMD11_RS00085 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD11_RS00125 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD11_RS00185 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) AMD11_RS00225 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD11_RS00280 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS00325 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD11_RS00340 PF00310 Glutamine amidotransferases class-II AMD11_RS00340 PF01645 Conserved region in glutamate synthase AMD11_RS00340 PF04898 Glutamate synthase central domain AMD11_RS00350 PF00310 Glutamine amidotransferases class-II AMD11_RS00420 PF13727 CoA-binding domain AMD11_RS00440 PF00733 Asparagine synthase AMD11_RS00450 PF00733 Asparagine synthase AMD11_RS00470 PF00308 Bacterial dnaA protein AMD11_RS00470 PF08299 Bacterial dnaA protein helix-turn-helix AMD11_RS00470 PF11638 DnaA N-terminal domain AMD11_RS00475 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD11_RS00475 PF02767 DNA polymerase III beta subunit, central domain AMD11_RS00475 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD11_RS00480 PF02463 RecF/RecN/SMC N terminal domain AMD11_RS00485 PF00204 DNA gyrase B AMD11_RS00485 PF00986 DNA gyrase B subunit, carboxyl terminus AMD11_RS00485 PF01751 Toprim domain AMD11_RS00485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS00490 PF02517 CAAX protease self-immunity AMD11_RS00495 PF01435 Peptidase family M48 AMD11_RS00500 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) AMD11_RS00505 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS00510 PF01618 AMD11_RS00510 AMD11_RS00515 PF02472 Biopolymer transport protein ExbD/TolR AMD11_RS00520 PF02472 Biopolymer transport protein ExbD/TolR AMD11_RS00525 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD11_RS00535 PF13091 PLD-like domain AMD11_RS00550 PF04055 Radical SAM superfamily AMD11_RS00555 PF13640 2OG-Fe(II) oxygenase superfamily AMD11_RS00560 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD11_RS00565 PF01694 Rhomboid family AMD11_RS00570 PF08850 AMD11_RS00570 AMD11_RS00575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD11_RS00575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD11_RS00580 PF03572 Peptidase family S41 AMD11_RS00580 PF13180 PDZ domain AMD11_RS00585 PF01551 Peptidase family M23 AMD11_RS00595 PF04389 Peptidase family M28 AMD11_RS00600 PF13670 AMD11_RS00600 AMD11_RS00605 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS00610 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS00615 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS00620 PF00107 Zinc-binding dehydrogenase AMD11_RS00620 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS00625 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS00625 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD11_RS00630 PF00310 Glutamine amidotransferases class-II AMD11_RS00630 PF01493 GXGXG motif AMD11_RS00630 PF01645 Conserved region in glutamate synthase AMD11_RS00630 PF04898 Glutamate synthase central domain AMD11_RS00635 PF11720 Peptidase inhibitor I78 family AMD11_RS00640 PF01028 Eukaryotic DNA topoisomerase I, catalytic core AMD11_RS00655 PF05368 NmrA-like family AMD11_RS00660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS00660 PF03466 LysR substrate binding domain AMD11_RS00665 PF00534 Glycosyl transferases group 1 AMD11_RS00665 PF13439 Glycosyltransferase Family 4 AMD11_RS00670 PF00534 Glycosyl transferases group 1 AMD11_RS00670 PF13439 Glycosyltransferase Family 4 AMD11_RS00675 PF02397 AMD11_RS00675 AMD11_RS00675 PF13727 CoA-binding domain AMD11_RS00680 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD11_RS00685 PF04932 AMD11_RS00685 AMD11_RS00690 PF03808 AMD11_RS00690 AMD11_RS00695 PF13439 Glycosyltransferase Family 4 AMD11_RS00695 PF13692 Glycosyl transferases group 1 AMD11_RS00710 PF13489 Methyltransferase domain AMD11_RS00715 PF00733 Asparagine synthase AMD11_RS00715 PF13537 Glutamine amidotransferase domain AMD11_RS00725 PF05711 Macrocin-O-methyltransferase (TylF) AMD11_RS00730 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS00740 PF01943 AMD11_RS00740 AMD11_RS00740 PF14667 Polysaccharide biosynthesis C-terminal domain AMD11_RS00745 PF00005 ABC transporter AMD11_RS00745 PF00664 ABC transporter transmembrane region AMD11_RS00750 PF13471 AMD11_RS00750 AMD11_RS00760 PF00733 Asparagine synthase AMD11_RS00760 PF13537 Glutamine amidotransferase domain AMD11_RS00765 PF13847 Methyltransferase domain AMD11_RS00770 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMD11_RS00780 PF00685 Sulfotransferase domain AMD11_RS00785 PF13673 Acetyltransferase (GNAT) domain AMD11_RS00790 PF07484 Phage Tail Collar Domain AMD11_RS00795 PF07484 Phage Tail Collar Domain AMD11_RS00800 PF07484 Phage Tail Collar Domain AMD11_RS00805 PF14907 Uncharacterised nucleotidyltransferase AMD11_RS00810 PF03965 Penicillinase repressor AMD11_RS00815 PF05569 BlaR1 peptidase M56 AMD11_RS00825 PF03435 Saccharopine dehydrogenase AMD11_RS00830 PF08975 Domain of unknown function (DUF1868) AMD11_RS00835 PF00593 TonB dependent receptor AMD11_RS00835 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS00840 PF00480 ROK family AMD11_RS00845 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD11_RS00850 PF13482 RNase_H superfamily AMD11_RS00855 PF00270 DEAD/DEAH box helicase AMD11_RS00855 PF00271 Helicase conserved C-terminal domain AMD11_RS00855 PF09369 AMD11_RS00855 AMD11_RS00860 PF03006 AMD11_RS00860 AMD11_RS00865 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMD11_RS00870 PF05016 Plasmid stabilisation system protein AMD11_RS00875 PF00106 short chain dehydrogenase AMD11_RS00880 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS00885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS00885 PF03466 LysR substrate binding domain AMD11_RS00890 PF14305 AMD11_RS00890 AMD11_RS00900 PF02525 Flavodoxin-like fold AMD11_RS00905 PF01527 Transposase AMD11_RS00915 PF13333 AMD11_RS00915 AMD11_RS00925 PF01609 Transposase DDE domain AMD11_RS00960 PF05532 CsbD-like AMD11_RS00965 PF08668 HDOD domain AMD11_RS00970 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMD11_RS00980 PF01447 Thermolysin metallopeptidase, catalytic domain AMD11_RS00980 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD11_RS00985 PF13460 NADH(P)-binding AMD11_RS00990 PF00293 NUDIX domain AMD11_RS00995 PF01435 Peptidase family M48 AMD11_RS01005 PF10116 AMD11_RS01005 AMD11_RS01010 PF00085 Thioredoxin AMD11_RS01020 PF00083 Sugar (and other) transporter AMD11_RS01025 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMD11_RS01030 PF12787 AMD11_RS01030 AMD11_RS01035 PF06080 AMD11_RS01035 AMD11_RS01050 PF07584 AMD11_RS01050 AMD11_RS01055 PF01882 AMD11_RS01055 AMD11_RS01060 PF07726 ATPase family associated with various cellular activities (AAA) AMD11_RS01065 PF13709 Domain of unknown function (DUF4159) AMD11_RS01070 PF01523 Putative modulator of DNA gyrase AMD11_RS01075 PF01523 Putative modulator of DNA gyrase AMD11_RS01080 PF01523 Putative modulator of DNA gyrase AMD11_RS01090 PF00316 Fructose-1-6-bisphosphatase AMD11_RS01095 PF00155 Aminotransferase class I and II AMD11_RS01100 PF00593 TonB dependent receptor AMD11_RS01100 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS01110 PF07883 Cupin domain AMD11_RS01115 PF00171 Aldehyde dehydrogenase family AMD11_RS01120 PF05610 AMD11_RS01120 AMD11_RS01135 PF02735 Ku70/Ku80 beta-barrel domain AMD11_RS01140 PF01070 FMN-dependent dehydrogenase AMD11_RS01150 PF00144 Beta-lactamase AMD11_RS01155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS01155 PF07730 Histidine kinase AMD11_RS01160 PF00072 Response regulator receiver domain AMD11_RS01160 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS01180 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS01180 PF13191 AAA ATPase domain AMD11_RS01185 PF07055 Enoyl reductase FAD binding domain AMD11_RS01185 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMD11_RS01185 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMD11_RS01195 PF00294 pfkB family carbohydrate kinase AMD11_RS01200 PF00593 TonB dependent receptor AMD11_RS01200 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS01205 PF13385 Concanavalin A-like lectin/glucanases superfamily AMD11_RS01220 PF13619 AMD11_RS01220 AMD11_RS01225 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AMD11_RS01230 PF01609 Transposase DDE domain AMD11_RS01250 PF01527 Transposase AMD11_RS01255 PF00665 Integrase core domain AMD11_RS01255 PF13276 AMD11_RS01255 AMD11_RS01260 PF00128 Alpha amylase, catalytic domain AMD11_RS01260 PF11896 Domain of unknown function (DUF3416) AMD11_RS01265 PF00128 Alpha amylase, catalytic domain AMD11_RS01265 PF16657 AMD11_RS01265 AMD11_RS01270 PF00128 Alpha amylase, catalytic domain AMD11_RS01270 PF02806 Alpha amylase, C-terminal all-beta domain AMD11_RS01270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS01275 PF12850 Calcineurin-like phosphoesterase superfamily domain AMD11_RS01280 PF00248 Aldo/keto reductase family AMD11_RS01285 PF00135 Carboxylesterase family AMD11_RS01290 PF07859 alpha/beta hydrolase fold AMD11_RS01300 PF03480 Bacterial extracellular solute-binding protein, family 7 AMD11_RS01305 PF04290 AMD11_RS01305 AMD11_RS01310 PF06808 AMD11_RS01310 AMD11_RS01315 PF04616 Glycosyl hydrolases family 43 AMD11_RS01320 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS01320 PF13377 Periplasmic binding protein-like domain AMD11_RS01325 PF04962 KduI/IolB family AMD11_RS01330 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS01335 PF02502 Ribose/Galactose Isomerase AMD11_RS01335 PF12408 Ribose-5-phosphate isomerase AMD11_RS01340 PF07883 Cupin domain AMD11_RS01340 PF13472 GDSL-like Lipase/Acylhydrolase family AMD11_RS01345 PF05299 M61 glycyl aminopeptidase AMD11_RS01350 PF14300 Domain of unknown function (DUF4375) AMD11_RS01355 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMD11_RS01360 PF01037 AsnC family AMD11_RS01360 PF13404 AsnC-type helix-turn-helix domain AMD11_RS01365 PF00593 TonB dependent receptor AMD11_RS01365 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS01370 PF01734 Patatin-like phospholipase AMD11_RS01375 PF01987 Mitochondrial biogenesis AIM24 AMD11_RS01380 PF00005 ABC transporter AMD11_RS01385 PF00487 AMD11_RS01385 AMD11_RS01390 PF13202 EF hand AMD11_RS01395 PF00005 ABC transporter AMD11_RS01400 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS01400 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMD11_RS01405 PF00266 Aminotransferase class-V AMD11_RS01410 PF03781 Sulfatase-modifying factor enzyme 1 AMD11_RS01410 PF12867 DinB superfamily AMD11_RS01415 PF10017 AMD11_RS01415 AMD11_RS01420 PF11625 Protein of unknown function (DUF3253) AMD11_RS01425 PF07805 HipA-like N-terminal domain AMD11_RS01425 PF13657 HipA N-terminal domain AMD11_RS01430 PF13560 Helix-turn-helix domain AMD11_RS01435 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMD11_RS01445 PF03547 AMD11_RS01445 AMD11_RS01455 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD11_RS01460 PF00300 Histidine phosphatase superfamily (branch 1) AMD11_RS01465 PF04264 YceI-like domain AMD11_RS01470 PF13091 PLD-like domain AMD11_RS01475 PF03061 Thioesterase superfamily AMD11_RS01480 PF01553 Acyltransferase AMD11_RS01485 PF12146 Putative lysophospholipase AMD11_RS01495 PF13432 Tetratricopeptide repeat AMD11_RS01500 PF01161 Phosphatidylethanolamine-binding protein AMD11_RS01505 PF00107 Zinc-binding dehydrogenase AMD11_RS01505 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS01510 PF03724 META domain AMD11_RS01510 PF14302 AMD11_RS01510 AMD11_RS01515 PF02673 AMD11_RS01515 AMD11_RS01520 PF00120 Glutamine synthetase, catalytic domain AMD11_RS01520 PF03951 Glutamine synthetase, beta-Grasp domain AMD11_RS01525 PF00543 Nitrogen regulatory protein P-II AMD11_RS01530 PF00909 Ammonium Transporter Family AMD11_RS01535 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS01540 PF00072 Response regulator receiver domain AMD11_RS01540 PF00158 Sigma-54 interaction domain AMD11_RS01540 PF02954 Bacterial regulatory protein, Fis family AMD11_RS01545 PF00080 Copper/zinc superoxide dismutase (SODC) AMD11_RS01550 PF00080 Copper/zinc superoxide dismutase (SODC) AMD11_RS01555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS01565 PF00108 Thiolase, N-terminal domain AMD11_RS01565 PF02803 Thiolase, C-terminal domain AMD11_RS01570 PF07219 AMD11_RS01570 AMD11_RS01575 PF04375 AMD11_RS01575 AMD11_RS01580 PF02602 Uroporphyrinogen-III synthase HemD AMD11_RS01585 PF01755 AMD11_RS01585 AMD11_RS01590 PF09500 Putative thioesterase (yiiD_Cterm) AMD11_RS01600 PF00581 Rhodanese-like domain AMD11_RS01605 PF02556 Preprotein translocase subunit SecB AMD11_RS01610 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD11_RS01610 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD11_RS01615 PF13505 Outer membrane protein beta-barrel domain AMD11_RS01620 PF00205 Thiamine pyrophosphate enzyme, central domain AMD11_RS01620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD11_RS01620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD11_RS01625 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS01625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS01630 PF00072 Response regulator receiver domain AMD11_RS01630 PF00158 Sigma-54 interaction domain AMD11_RS01630 PF02954 Bacterial regulatory protein, Fis family AMD11_RS01645 PF07690 Major Facilitator Superfamily AMD11_RS01650 PF00588 SpoU rRNA Methylase family AMD11_RS01660 PF13698 AMD11_RS01660 AMD11_RS01665 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD11_RS01665 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD11_RS01670 PF02661 Fic/DOC family AMD11_RS01670 PF13784 Fic/DOC family N-terminal AMD11_RS01675 PF00561 alpha/beta hydrolase fold AMD11_RS01680 PF03692 AMD11_RS01680 AMD11_RS01685 PF00501 AMP-binding enzyme AMD11_RS01690 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD11_RS01695 PF07043 AMD11_RS01695 AMD11_RS01705 PF01820 D-ala D-ala ligase N-terminus AMD11_RS01710 PF02036 SCP-2 sterol transfer family AMD11_RS01715 PF03109 AMD11_RS01715 AMD11_RS01720 PF07883 Cupin domain AMD11_RS01725 PF00849 RNA pseudouridylate synthase AMD11_RS01730 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) AMD11_RS01735 PF00472 RF-1 domain AMD11_RS01740 PF01553 Acyltransferase AMD11_RS01745 PF01112 Asparaginase AMD11_RS01750 PF01432 Peptidase family M3 AMD11_RS01755 PF12706 Beta-lactamase superfamily domain AMD11_RS01765 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS01765 PF14246 AefR-like transcriptional repressor, C-terminal region AMD11_RS01770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS01775 PF12833 Helix-turn-helix domain AMD11_RS01780 PF00999 Sodium/hydrogen exchanger family AMD11_RS01785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS01785 PF03466 LysR substrate binding domain AMD11_RS01790 PF01274 Malate synthase AMD11_RS01795 PF00463 Isocitrate lyase family AMD11_RS01800 PF00027 Cyclic nucleotide-binding domain AMD11_RS01800 PF00990 GGDEF domain AMD11_RS01820 PF00326 Prolyl oligopeptidase family AMD11_RS01825 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMD11_RS01825 PF00364 Biotin-requiring enzyme AMD11_RS01825 PF02785 Biotin carboxylase C-terminal domain AMD11_RS01825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD11_RS01830 PF01039 Carboxyl transferase domain AMD11_RS01835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS01835 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS01835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS01840 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS01850 PF08808 AMD11_RS01850 AMD11_RS01855 PF11804 AMD11_RS01855 AMD11_RS01860 PF03929 AMD11_RS01860 AMD11_RS01865 PF12365 AMD11_RS01865 AMD11_RS01875 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD11_RS01880 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS01885 PF03203 AMD11_RS01885 AMD11_RS01890 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMD11_RS01890 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMD11_RS01910 PF12146 Putative lysophospholipase AMD11_RS01915 PF03969 AFG1-like ATPase AMD11_RS01920 PF01047 MarR family AMD11_RS01925 PF02566 OsmC-like protein AMD11_RS01935 PF12697 Alpha/beta hydrolase family AMD11_RS01940 PF11101 AMD11_RS01940 AMD11_RS01955 PF00107 Zinc-binding dehydrogenase AMD11_RS01955 PF16884 AMD11_RS01955 AMD11_RS01960 PF00248 Aldo/keto reductase family AMD11_RS01970 PF00849 RNA pseudouridylate synthase AMD11_RS01975 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS01975 PF13620 Carboxypeptidase regulatory-like domain AMD11_RS01985 PF00271 Helicase conserved C-terminal domain AMD11_RS01985 PF04408 Helicase associated domain (HA2) AMD11_RS01985 PF08482 AMD11_RS01985 AMD11_RS01995 PF07308 AMD11_RS01995 AMD11_RS02000 PF00576 HIUase/Transthyretin family AMD11_RS02005 PF13738 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS02010 PF09349 OHCU decarboxylase AMD11_RS02015 PF11533 Protein of unknown function (DUF3225) AMD11_RS02020 PF01522 Polysaccharide deacetylase AMD11_RS02025 PF00266 Aminotransferase class-V AMD11_RS02030 PF01546 Peptidase family M20/M25/M40 AMD11_RS02030 PF07687 Peptidase dimerisation domain AMD11_RS02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS02035 PF03466 LysR substrate binding domain AMD11_RS02040 PF07690 Major Facilitator Superfamily AMD11_RS02050 PF01019 Gamma-glutamyltranspeptidase AMD11_RS02055 PF01425 Amidase AMD11_RS02060 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD11_RS02065 PF00962 Adenosine/AMP deaminase AMD11_RS02070 PF00860 Permease family AMD11_RS02080 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS02080 PF00970 Oxidoreductase FAD-binding domain AMD11_RS02085 PF00355 Rieske [2Fe-2S] domain AMD11_RS02090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS02090 PF03466 LysR substrate binding domain AMD11_RS02095 PF01026 TatD related DNase AMD11_RS02110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS02110 PF03466 LysR substrate binding domain AMD11_RS02115 PF07690 Major Facilitator Superfamily AMD11_RS02120 PF13411 MerR HTH family regulatory protein AMD11_RS02125 PF12697 Alpha/beta hydrolase family AMD11_RS02130 PF02146 Sir2 family AMD11_RS02135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD11_RS02140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD11_RS02140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD11_RS02150 PF00551 Formyl transferase AMD11_RS02150 PF01842 ACT domain AMD11_RS02155 PF00072 Response regulator receiver domain AMD11_RS02155 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS02160 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS02160 PF00672 HAMP domain AMD11_RS02160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS02165 PF16576 AMD11_RS02165 AMD11_RS02170 PF00873 AcrB/AcrD/AcrF family AMD11_RS02175 PF02321 Outer membrane efflux protein AMD11_RS02185 PF02219 Methylenetetrahydrofolate reductase AMD11_RS02190 PF02677 AMD11_RS02190 AMD11_RS02195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS02195 PF03466 LysR substrate binding domain AMD11_RS02200 PF03358 NADPH-dependent FMN reductase AMD11_RS02205 PF08908 AMD11_RS02205 AMD11_RS02210 PF01717 Cobalamin-independent synthase, Catalytic domain AMD11_RS02215 PF03812 AMD11_RS02215 AMD11_RS02220 PF07396 Phosphate-selective porin O and P AMD11_RS02225 PF05368 NmrA-like family AMD11_RS02230 PF01638 HxlR-like helix-turn-helix AMD11_RS02255 PF00665 Integrase core domain AMD11_RS02255 PF13276 AMD11_RS02255 AMD11_RS02260 PF01527 Transposase AMD11_RS02265 PF00589 Phage integrase family AMD11_RS02270 PF00920 Dehydratase family AMD11_RS02275 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS02290 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS02300 PF07690 Major Facilitator Superfamily AMD11_RS02305 PF11871 AMD11_RS02305 AMD11_RS02305 PF13487 HD domain AMD11_RS02310 PF12802 MarR family AMD11_RS02315 PF13557 AMD11_RS02315 AMD11_RS02320 PF00106 short chain dehydrogenase AMD11_RS02320 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS02325 PF00171 Aldehyde dehydrogenase family AMD11_RS02330 PF02311 AraC-like ligand binding domain AMD11_RS02330 PF12833 Helix-turn-helix domain AMD11_RS02335 PF01494 FAD binding domain AMD11_RS02340 PF12680 SnoaL-like domain AMD11_RS02345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD11_RS02345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD11_RS02350 PF00230 Major intrinsic protein AMD11_RS02355 PF01266 FAD dependent oxidoreductase AMD11_RS02355 PF16901 AMD11_RS02355 AMD11_RS02360 PF00455 AMD11_RS02360 AMD11_RS02360 PF08220 DeoR-like helix-turn-helix domain AMD11_RS02365 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS02365 PF00175 Oxidoreductase NAD-binding domain AMD11_RS02365 PF00970 Oxidoreductase FAD-binding domain AMD11_RS02370 PF00355 Rieske [2Fe-2S] domain AMD11_RS02375 PF01144 Coenzyme A transferase AMD11_RS02380 PF01144 Coenzyme A transferase AMD11_RS02385 PF00108 Thiolase, N-terminal domain AMD11_RS02385 PF02803 Thiolase, C-terminal domain AMD11_RS02390 PF00775 Dioxygenase AMD11_RS02390 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMD11_RS02395 PF00775 Dioxygenase AMD11_RS02400 PF00206 Lyase AMD11_RS02400 PF10397 Adenylosuccinate lyase C-terminus AMD11_RS02405 PF00561 alpha/beta hydrolase fold AMD11_RS02410 PF02627 Carboxymuconolactone decarboxylase family AMD11_RS02415 PF12146 Putative lysophospholipase AMD11_RS02420 PF01614 Bacterial transcriptional regulator AMD11_RS02420 PF09339 IclR helix-turn-helix domain AMD11_RS02425 PF01163 RIO1 family AMD11_RS02430 PF07859 alpha/beta hydrolase fold AMD11_RS02435 PF10677 AMD11_RS02435 AMD11_RS02440 PF01134 Glucose inhibited division protein A AMD11_RS02440 PF13932 GidA associated domain 3 AMD11_RS02450 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS02455 PF02698 DUF218 domain AMD11_RS02460 PF12680 SnoaL-like domain AMD11_RS02465 PF05118 Aspartyl/Asparaginyl beta-hydroxylase AMD11_RS02470 PF08241 Methyltransferase domain AMD11_RS02475 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS02480 PF12697 Alpha/beta hydrolase family AMD11_RS02490 PF00155 Aminotransferase class I and II AMD11_RS02495 PF04055 Radical SAM superfamily AMD11_RS02495 PF06968 Biotin and Thiamin Synthesis associated domain AMD11_RS02500 PF00156 Phosphoribosyl transferase domain AMD11_RS02505 PF01040 UbiA prenyltransferase family AMD11_RS02520 PF05819 AMD11_RS02520 AMD11_RS02530 PF05932 Tir chaperone protein (CesT) family AMD11_RS02555 PF01313 AMD11_RS02555 AMD11_RS02560 PF00813 AMD11_RS02560 AMD11_RS02565 PF01052 Surface presentation of antigens (SPOA) AMD11_RS02570 PF09483 AMD11_RS02570 AMD11_RS02575 PF00771 FHIPEP family AMD11_RS02580 PF01312 FlhB HrpN YscU SpaS Family AMD11_RS02585 PF09613 AMD11_RS02585 AMD11_RS02590 PF09487 AMD11_RS02590 AMD11_RS02595 PF01514 Secretory protein of YscJ/FliF family AMD11_RS02600 PF09502 AMD11_RS02600 AMD11_RS02605 PF02108 AMD11_RS02605 AMD11_RS02610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS02610 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD11_RS02615 PF09486 AMD11_RS02615 AMD11_RS02620 PF01311 AMD11_RS02620 AMD11_RS02625 PF00263 AMD11_RS02625 AMD11_RS02625 PF03958 Bacterial type II/III secretion system short domain AMD11_RS02635 PF01464 Transglycosylase SLT domain AMD11_RS02645 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD11_RS02650 PF00924 Mechanosensitive ion channel AMD11_RS02650 PF12607 AMD11_RS02650 AMD11_RS02655 PF00884 Sulfatase AMD11_RS02660 PF03109 AMD11_RS02660 AMD11_RS02665 PF05661 AMD11_RS02665 AMD11_RS02670 PF00990 GGDEF domain AMD11_RS02675 PF00534 Glycosyl transferases group 1 AMD11_RS02675 PF08323 Starch synthase catalytic domain AMD11_RS02680 PF00128 Alpha amylase, catalytic domain AMD11_RS02680 PF02806 Alpha amylase, C-terminal all-beta domain AMD11_RS02680 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS02685 PF00128 Alpha amylase, catalytic domain AMD11_RS02685 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS02685 PF11941 Domain of unknown function (DUF3459) AMD11_RS02690 PF02446 4-alpha-glucanotransferase AMD11_RS02695 PF00128 Alpha amylase, catalytic domain AMD11_RS02700 PF11154 AMD11_RS02700 AMD11_RS02705 PF00128 Alpha amylase, catalytic domain AMD11_RS02705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS02710 PF13460 NADH(P)-binding AMD11_RS02715 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS02720 PF00890 FAD binding domain AMD11_RS02720 PF13454 FAD-NAD(P)-binding AMD11_RS02730 PF06903 AMD11_RS02730 AMD11_RS02735 PF02321 Outer membrane efflux protein AMD11_RS02740 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS02745 PF16576 AMD11_RS02745 AMD11_RS02750 PF00873 AcrB/AcrD/AcrF family AMD11_RS02755 PF00106 short chain dehydrogenase AMD11_RS02765 PF00270 DEAD/DEAH box helicase AMD11_RS02765 PF00271 Helicase conserved C-terminal domain AMD11_RS02770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD11_RS02770 PF00364 Biotin-requiring enzyme AMD11_RS02770 PF02817 e3 binding domain AMD11_RS02775 PF07653 Variant SH3 domain AMD11_RS02780 PF02779 Transketolase, pyrimidine binding domain AMD11_RS02780 PF02780 Transketolase, C-terminal domain AMD11_RS02785 PF00676 Dehydrogenase E1 component AMD11_RS02790 PF00932 Lamin Tail Domain AMD11_RS02790 PF03160 Calx-beta domain AMD11_RS02790 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS02795 PF03301 Tryptophan 2,3-dioxygenase AMD11_RS02800 PF00854 POT family AMD11_RS02805 PF13899 Thioredoxin-like AMD11_RS02810 PF12802 MarR family AMD11_RS02815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS02815 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AMD11_RS02820 PF04209 homogentisate 1,2-dioxygenase AMD11_RS02835 PF03334 AMD11_RS02835 AMD11_RS02840 PF04066 AMD11_RS02840 AMD11_RS02845 PF01899 AMD11_RS02845 AMD11_RS02850 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD11_RS02855 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD11_RS02860 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD11_RS02860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD11_RS02860 PF04039 AMD11_RS02860 AMD11_RS02860 PF13244 AMD11_RS02860 AMD11_RS02865 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS02870 PF06127 AMD11_RS02870 AMD11_RS02875 PF01447 Thermolysin metallopeptidase, catalytic domain AMD11_RS02875 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD11_RS02875 PF07504 Fungalysin/Thermolysin Propeptide Motif AMD11_RS02880 PF00182 Chitinase class I AMD11_RS02880 PF01471 Putative peptidoglycan binding domain AMD11_RS02880 PF01551 Peptidase family M23 AMD11_RS02900 PF01259 SAICAR synthetase AMD11_RS02905 PF00226 DnaJ domain AMD11_RS02910 PF13505 Outer membrane protein beta-barrel domain AMD11_RS02915 PF00834 Ribulose-phosphate 3 epimerase family AMD11_RS02920 PF00583 Acetyltransferase (GNAT) family AMD11_RS02925 PF00781 Diacylglycerol kinase catalytic domain AMD11_RS02930 PF00425 chorismate binding enzyme AMD11_RS02930 PF04715 Anthranilate synthase component I, N terminal region AMD11_RS02935 PF01212 Beta-eliminating lyase AMD11_RS02940 PF00117 Glutamine amidotransferase class-I AMD11_RS02945 PF01613 Flavin reductase like domain AMD11_RS02950 PF00591 Glycosyl transferase family, a/b domain AMD11_RS02950 PF02885 Glycosyl transferase family, helical bundle domain AMD11_RS02955 PF00218 Indole-3-glycerol phosphate synthase AMD11_RS02960 PF12710 haloacid dehalogenase-like hydrolase AMD11_RS02965 PF00027 Cyclic nucleotide-binding domain AMD11_RS02965 PF00325 Bacterial regulatory proteins, crp family AMD11_RS02970 PF02675 S-adenosylmethionine decarboxylase AMD11_RS02975 PF00893 Small Multidrug Resistance protein AMD11_RS02980 PF03232 AMD11_RS02980 AMD11_RS02985 PF00572 Ribosomal protein L13 AMD11_RS02990 PF00380 Ribosomal protein S9/S16 AMD11_RS03005 PF00293 NUDIX domain AMD11_RS03010 PF04324 BFD-like [2Fe-2S] binding domain AMD11_RS03015 PF00210 Ferritin-like domain AMD11_RS03020 PF00072 Response regulator receiver domain AMD11_RS03020 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS03020 PF01627 Hpt domain AMD11_RS03020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS03025 PF00072 Response regulator receiver domain AMD11_RS03025 PF00563 EAL domain AMD11_RS03025 PF00990 GGDEF domain AMD11_RS03030 PF13548 AMD11_RS03030 AMD11_RS03040 PF04519 AMD11_RS03040 AMD11_RS03045 PF01521 Iron-sulphur cluster biosynthesis AMD11_RS03055 PF03583 Secretory lipase AMD11_RS03060 PF01609 Transposase DDE domain AMD11_RS03065 PF00293 NUDIX domain AMD11_RS03065 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMD11_RS03065 PF09297 NADH pyrophosphatase zinc ribbon domain AMD11_RS03070 PF03186 AMD11_RS03070 AMD11_RS03075 PF10825 AMD11_RS03075 AMD11_RS03080 PF04505 AMD11_RS03080 AMD11_RS03090 PF01553 Acyltransferase AMD11_RS03090 PF07690 Major Facilitator Superfamily AMD11_RS03095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS03095 PF03466 LysR substrate binding domain AMD11_RS03100 PF07690 Major Facilitator Superfamily AMD11_RS03105 PF12805 AMD11_RS03105 AMD11_RS03105 PF13515 AMD11_RS03105 AMD11_RS03115 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD11_RS03115 PF02843 Phosphoribosylglycinamide synthetase, C domain AMD11_RS03115 PF02844 Phosphoribosylglycinamide synthetase, N domain AMD11_RS03125 PF01808 AICARFT/IMPCHase bienzyme AMD11_RS03125 PF02142 MGS-like domain AMD11_RS03130 PF01066 CDP-alcohol phosphatidyltransferase AMD11_RS03135 PF12146 Putative lysophospholipase AMD11_RS03135 PF12147 AMD11_RS03135 AMD11_RS03140 PF00782 Dual specificity phosphatase, catalytic domain AMD11_RS03155 PF01066 CDP-alcohol phosphatidyltransferase AMD11_RS03160 PF01553 Acyltransferase AMD11_RS03165 PF01148 Cytidylyltransferase family AMD11_RS03170 PF02954 Bacterial regulatory protein, Fis family AMD11_RS03175 PF11906 AMD11_RS03175 AMD11_RS03185 PF01381 Helix-turn-helix AMD11_RS03195 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AMD11_RS03210 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMD11_RS03210 PF02785 Biotin carboxylase C-terminal domain AMD11_RS03210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD11_RS03215 PF05635 23S rRNA-intervening sequence protein AMD11_RS03220 PF00364 Biotin-requiring enzyme AMD11_RS03225 PF01220 Dehydroquinase class II AMD11_RS03230 PF02683 AMD11_RS03230 AMD11_RS03230 PF11412 Disulphide bond corrector protein DsbC AMD11_RS03230 PF13899 Thioredoxin-like AMD11_RS03235 PF03091 CutA1 divalent ion tolerance protein AMD11_RS03240 PF12625 AMD11_RS03240 AMD11_RS03240 PF12833 Helix-turn-helix domain AMD11_RS03250 PF01852 START domain AMD11_RS03260 PF00106 short chain dehydrogenase AMD11_RS03265 PF00932 Lamin Tail Domain AMD11_RS03265 PF04231 Endonuclease I AMD11_RS03265 PF13205 Bacterial Ig-like domain AMD11_RS03270 PF00166 Chaperonin 10 Kd subunit AMD11_RS03275 PF00118 TCP-1/cpn60 chaperonin family AMD11_RS03285 PF00593 TonB dependent receptor AMD11_RS03285 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS03290 PF00793 DAHP synthetase I family AMD11_RS03305 PF08450 SMP-30/Gluconolaconase/LRE-like region AMD11_RS03315 PF03710 Glutamate-ammonia ligase adenylyltransferase AMD11_RS03315 PF08335 GlnD PII-uridylyltransferase AMD11_RS03320 PF02592 AMD11_RS03320 AMD11_RS03330 PF00082 Subtilase family AMD11_RS03330 PF09286 Pro-kumamolisin, activation domain AMD11_RS03335 PF06258 AMD11_RS03335 AMD11_RS03340 PF00881 Nitroreductase family AMD11_RS03345 PF04264 YceI-like domain AMD11_RS03355 PF00328 Histidine phosphatase superfamily (branch 2) AMD11_RS03360 PF04954 Siderophore-interacting protein AMD11_RS03360 PF08021 Siderophore-interacting FAD-binding domain AMD11_RS03365 PF03551 Transcriptional regulator PadR-like family AMD11_RS03370 PF16957 AMD11_RS03370 AMD11_RS03375 PF06857 AMD11_RS03375 AMD11_RS03380 PF01039 Carboxyl transferase domain AMD11_RS03385 PF06833 Malonate decarboxylase gamma subunit (MdcE) AMD11_RS03390 PF10620 AMD11_RS03390 AMD11_RS03395 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AMD11_RS03400 PF00698 Acyl transferase domain AMD11_RS03405 PF03600 Citrate transporter AMD11_RS03405 PF07158 AMD11_RS03405 AMD11_RS03410 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS03410 PF07729 FCD domain AMD11_RS03415 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS03420 PF01740 STAS domain AMD11_RS03425 PF13581 Histidine kinase-like ATPase domain AMD11_RS03430 PF00672 HAMP domain AMD11_RS03430 PF02743 Cache domain AMD11_RS03430 PF07228 Stage II sporulation protein E (SpoIIE) AMD11_RS03440 PF01764 Lipase (class 3) AMD11_RS03445 PF07745 Glycosyl hydrolase family 53 AMD11_RS03450 PF00456 Transketolase, thiamine diphosphate binding domain AMD11_RS03455 PF00665 Integrase core domain AMD11_RS03455 PF13276 AMD11_RS03455 AMD11_RS03460 PF01527 Transposase AMD11_RS03465 PF00106 short chain dehydrogenase AMD11_RS03470 PF12833 Helix-turn-helix domain AMD11_RS03470 PF12852 Cupin AMD11_RS03480 PF00106 short chain dehydrogenase AMD11_RS03480 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS03485 PF01145 SPFH domain / Band 7 family AMD11_RS03490 PF13409 Glutathione S-transferase, N-terminal domain AMD11_RS03490 PF13410 Glutathione S-transferase, C-terminal domain AMD11_RS03495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS03500 PF13548 AMD11_RS03500 AMD11_RS03510 PF05708 Orthopoxvirus protein of unknown function (DUF830) AMD11_RS03515 PF12823 AMD11_RS03515 AMD11_RS03520 PF00326 Prolyl oligopeptidase family AMD11_RS03520 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD11_RS03525 PF07759 AMD11_RS03525 AMD11_RS03535 PF00990 GGDEF domain AMD11_RS03555 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMD11_RS03560 PF00892 EamA-like transporter family AMD11_RS03565 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD11_RS03575 PF00324 Amino acid permease AMD11_RS03585 PF01544 CorA-like Mg2+ transporter protein AMD11_RS03590 PF01987 Mitochondrial biogenesis AIM24 AMD11_RS03595 PF01204 Trehalase AMD11_RS03600 PF01904 Protein of unknown function DUF72 AMD11_RS03605 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD11_RS03605 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD11_RS03625 PF00675 Insulinase (Peptidase family M16) AMD11_RS03625 PF05193 Peptidase M16 inactive domain AMD11_RS03630 PF00990 GGDEF domain AMD11_RS03630 PF01590 GAF domain AMD11_RS03630 PF08447 PAS fold AMD11_RS03630 PF08448 PAS fold AMD11_RS03635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS03635 PF00672 HAMP domain AMD11_RS03635 PF17200 AMD11_RS03635 AMD11_RS03640 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS03640 PF00553 Cellulose binding domain AMD11_RS03645 PF00916 AMD11_RS03645 AMD11_RS03645 PF01740 STAS domain AMD11_RS03655 PF00990 GGDEF domain AMD11_RS03660 PF02225 PA domain AMD11_RS03660 PF04389 Peptidase family M28 AMD11_RS03670 PF13632 Glycosyl transferase family group 2 AMD11_RS03675 PF02230 Phospholipase/Carboxylesterase AMD11_RS03680 PF06580 AMD11_RS03680 AMD11_RS03685 PF00072 Response regulator receiver domain AMD11_RS03685 PF04397 LytTr DNA-binding domain AMD11_RS03690 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMD11_RS03690 PF03900 Porphobilinogen deaminase, C-terminal domain AMD11_RS03695 PF04338 Protein of unknown function, DUF481 AMD11_RS03700 PF08279 HTH domain AMD11_RS03700 PF13280 AMD11_RS03700 AMD11_RS03705 PF08212 Lipocalin-like domain AMD11_RS03715 PF00326 Prolyl oligopeptidase family AMD11_RS03715 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD11_RS03725 PF00155 Aminotransferase class I and II AMD11_RS03730 PF00326 Prolyl oligopeptidase family AMD11_RS03730 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD11_RS03735 PF04304 AMD11_RS03735 AMD11_RS03740 PF13627 AMD11_RS03740 AMD11_RS03745 PF01678 Diaminopimelate epimerase AMD11_RS03750 PF04340 Protein of unknown function, DUF484 AMD11_RS03755 PF00589 Phage integrase family AMD11_RS03755 PF02899 Phage integrase, N-terminal SAM-like domain AMD11_RS03760 PF00227 Proteasome subunit AMD11_RS03765 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS03765 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS03765 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS03770 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD11_RS03775 PF13673 Acetyltransferase (GNAT) domain AMD11_RS03780 PF16576 AMD11_RS03780 AMD11_RS03785 PF07690 Major Facilitator Superfamily AMD11_RS03790 PF01209 ubiE/COQ5 methyltransferase family AMD11_RS03795 PF00672 HAMP domain AMD11_RS03795 PF00990 GGDEF domain AMD11_RS03800 PF01433 Peptidase family M1 AMD11_RS03800 PF09127 Leukotriene A4 hydrolase, C-terminal AMD11_RS03815 PF00702 haloacid dehalogenase-like hydrolase AMD11_RS03820 PF13360 PQQ-like domain AMD11_RS03820 PF13570 PQQ-like domain AMD11_RS03825 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD11_RS03825 PF12796 Ankyrin repeats (3 copies) AMD11_RS03825 PF13857 Ankyrin repeats (many copies) AMD11_RS03830 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD11_RS03835 PF10282 Lactonase, 7-bladed beta-propeller AMD11_RS03840 PF00107 Zinc-binding dehydrogenase AMD11_RS03840 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS03845 PF00593 TonB dependent receptor AMD11_RS03845 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS03850 PF00158 Sigma-54 interaction domain AMD11_RS03850 PF02954 Bacterial regulatory protein, Fis family AMD11_RS03855 PF00294 pfkB family carbohydrate kinase AMD11_RS03860 PF06723 MreB/Mbl protein AMD11_RS03865 PF04085 rod shape-determining protein MreC AMD11_RS03870 PF04093 AMD11_RS03870 AMD11_RS03875 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS03875 PF03717 Penicillin-binding Protein dimerisation domain AMD11_RS03880 PF01098 AMD11_RS03880 AMD11_RS03885 PF00295 Glycosyl hydrolases family 28 AMD11_RS03890 PF13406 Transglycosylase SLT domain AMD11_RS03895 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AMD11_RS03895 PF05036 Sporulation related domain AMD11_RS03905 PF00768 D-alanyl-D-alanine carboxypeptidase AMD11_RS03905 PF07943 Penicillin-binding protein 5, C-terminal domain AMD11_RS03910 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) AMD11_RS03915 PF04359 Protein of unknown function (DUF493) AMD11_RS03920 PF03099 Biotin/lipoate A/B protein ligase family AMD11_RS03925 PF04055 Radical SAM superfamily AMD11_RS03925 PF16881 AMD11_RS03925 AMD11_RS03930 PF00595 PDZ domain (Also known as DHR or GLGF) AMD11_RS03930 PF03572 Peptidase family S41 AMD11_RS03930 PF11818 AMD11_RS03930 AMD11_RS03935 PF01925 AMD11_RS03935 AMD11_RS03940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS03940 PF03466 LysR substrate binding domain AMD11_RS03945 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS03950 PF00293 NUDIX domain AMD11_RS03950 PF01467 Cytidylyltransferase AMD11_RS03955 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD11_RS03965 PF01555 DNA methylase AMD11_RS03970 PF10001 AMD11_RS03970 AMD11_RS03975 PF05433 AMD11_RS03975 AMD11_RS03985 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMD11_RS03985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD11_RS03990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD11_RS03990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD11_RS03995 PF04972 BON domain AMD11_RS04000 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS04000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04000 PF05227 CHASE3 domain AMD11_RS04000 PF13188 PAS domain AMD11_RS04005 PF00072 Response regulator receiver domain AMD11_RS04010 PF00072 Response regulator receiver domain AMD11_RS04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04015 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD11_RS04020 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS04025 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase AMD11_RS04030 PF04892 AMD11_RS04030 AMD11_RS04035 PF00593 TonB dependent receptor AMD11_RS04035 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS04040 PF13640 2OG-Fe(II) oxygenase superfamily AMD11_RS04050 PF00593 TonB dependent receptor AMD11_RS04050 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS04055 PF11356 Type IV pilus biogenesis AMD11_RS04055 PF13180 PDZ domain AMD11_RS04060 PF00263 AMD11_RS04060 AMD11_RS04060 PF03958 Bacterial type II/III secretion system short domain AMD11_RS04065 PF00437 Type II/IV secretion system protein AMD11_RS04070 PF00482 Type II secretion system (T2SS), protein F AMD11_RS04075 PF08334 Type II secretion system (T2SS), protein G AMD11_RS04075 PF13544 AMD11_RS04075 AMD11_RS04080 PF12019 Type II transport protein GspH AMD11_RS04085 PF02501 Type II secretion system (T2SS), protein I AMD11_RS04085 PF13633 Prokaryotic N-terminal methylation site AMD11_RS04090 PF11612 Type II secretion system (T2SS), protein J AMD11_RS04090 PF13544 AMD11_RS04090 AMD11_RS04095 PF03934 Type II secretion system (T2SS), protein K AMD11_RS04100 PF05134 Type II secretion system (T2SS), protein L AMD11_RS04100 PF12693 GspL periplasmic domain AMD11_RS04105 PF04612 Type II secretion system (T2SS), protein M AMD11_RS04110 PF01203 AMD11_RS04110 AMD11_RS04115 PF00593 TonB dependent receptor AMD11_RS04115 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS04125 PF05089 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain AMD11_RS04125 PF12971 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain AMD11_RS04125 PF12972 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain AMD11_RS04130 PF07786 AMD11_RS04130 AMD11_RS04135 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS04135 PF07702 UTRA domain AMD11_RS04140 PF07690 Major Facilitator Superfamily AMD11_RS04145 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS04145 PF13377 Periplasmic binding protein-like domain AMD11_RS04150 PF01380 SIS domain AMD11_RS04155 PF01979 Amidohydrolase family AMD11_RS04160 PF00593 TonB dependent receptor AMD11_RS04160 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS04165 PF01743 Poly A polymerase head domain AMD11_RS04165 PF01966 HD domain AMD11_RS04165 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD11_RS04170 PF00732 GMC oxidoreductase AMD11_RS04170 PF05199 GMC oxidoreductase AMD11_RS04175 PF00171 Aldehyde dehydrogenase family AMD11_RS04180 PF02028 BCCT family transporter AMD11_RS04185 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS04190 PF01323 DSBA-like thioredoxin domain AMD11_RS04195 PF13462 Thioredoxin AMD11_RS04200 PF00034 Cytochrome c AMD11_RS04205 PF01926 50S ribosome-binding GTPase AMD11_RS04210 PF00753 Metallo-beta-lactamase superfamily AMD11_RS04215 PF12833 Helix-turn-helix domain AMD11_RS04220 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMD11_RS04225 PF00672 HAMP domain AMD11_RS04225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04230 PF00072 Response regulator receiver domain AMD11_RS04230 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS04235 PF00534 Glycosyl transferases group 1 AMD11_RS04245 PF02583 Metal-sensitive transcriptional repressor AMD11_RS04250 PF00107 Zinc-binding dehydrogenase AMD11_RS04250 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS04255 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD11_RS04260 PF00756 Putative esterase AMD11_RS04270 PF00155 Aminotransferase class I and II AMD11_RS04270 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS04275 PF02567 Phenazine biosynthesis-like protein AMD11_RS04280 PF00892 EamA-like transporter family AMD11_RS04290 PF00005 ABC transporter AMD11_RS04290 PF12848 ABC transporter AMD11_RS04295 PF11776 Domain of unknown function (DUF3315) AMD11_RS04300 PF00464 Serine hydroxymethyltransferase AMD11_RS04305 PF03477 ATP cone domain AMD11_RS04310 PF00583 Acetyltransferase (GNAT) family AMD11_RS04315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD11_RS04315 PF01872 RibD C-terminal domain AMD11_RS04325 PF00677 Lumazine binding domain AMD11_RS04330 PF00925 GTP cyclohydrolase II AMD11_RS04330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMD11_RS04335 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMD11_RS04340 PF01029 NusB family AMD11_RS04345 PF00586 AIR synthase related protein, N-terminal domain AMD11_RS04345 PF02769 AIR synthase related protein, C-terminal domain AMD11_RS04350 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD11_RS04350 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD11_RS04355 PF00646 F-box domain AMD11_RS04360 PF09604 AMD11_RS04360 AMD11_RS04365 PF03814 AMD11_RS04365 AMD11_RS04370 PF00122 E1-E2 ATPase AMD11_RS04370 PF00702 haloacid dehalogenase-like hydrolase AMD11_RS04375 PF02669 AMD11_RS04375 AMD11_RS04380 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS04380 PF00582 Universal stress protein family AMD11_RS04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04380 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD11_RS04380 PF13493 Domain of unknown function (DUF4118) AMD11_RS04385 PF00072 Response regulator receiver domain AMD11_RS04385 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS04400 PF01565 FAD binding domain AMD11_RS04400 PF02913 FAD linked oxidases, C-terminal domain AMD11_RS04405 PF04307 AMD11_RS04405 AMD11_RS04410 PF02021 Uncharacterised protein family UPF0102 AMD11_RS04415 PF04348 LppC putative lipoprotein AMD11_RS04420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD11_RS04425 PF07362 Post-segregation antitoxin CcdA AMD11_RS04430 PF05742 AMD11_RS04430 AMD11_RS04435 PF02381 MraZ protein AMD11_RS04440 PF01795 MraW methylase family AMD11_RS04445 PF04999 AMD11_RS04445 AMD11_RS04450 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS04450 PF03717 Penicillin-binding Protein dimerisation domain AMD11_RS04455 PF01225 Mur ligase family, catalytic domain AMD11_RS04455 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS04455 PF08245 Mur ligase middle domain AMD11_RS04460 PF01225 Mur ligase family, catalytic domain AMD11_RS04460 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS04460 PF08245 Mur ligase middle domain AMD11_RS04465 PF00953 Glycosyl transferase family 4 AMD11_RS04470 PF01098 AMD11_RS04470 AMD11_RS04475 PF03033 Glycosyltransferase family 28 N-terminal domain AMD11_RS04475 PF04101 Glycosyltransferase family 28 C-terminal domain AMD11_RS04480 PF01225 Mur ligase family, catalytic domain AMD11_RS04480 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS04480 PF08245 Mur ligase middle domain AMD11_RS04485 PF01820 D-ala D-ala ligase N-terminus AMD11_RS04485 PF07478 D-ala D-ala ligase C-terminus AMD11_RS04490 PF03799 Cell division protein FtsQ AMD11_RS04490 PF08478 POTRA domain, FtsQ-type AMD11_RS04495 PF02491 SHS2 domain inserted in FTSA AMD11_RS04495 PF14450 Cell division protein FtsA AMD11_RS04500 PF00091 Tubulin/FtsZ family, GTPase domain AMD11_RS04500 PF12327 FtsZ family, C-terminal domain AMD11_RS04505 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMD11_RS04510 PF05258 AMD11_RS04510 AMD11_RS04515 PF01551 Peptidase family M23 AMD11_RS04520 PF01043 SecA preprotein cross-linking domain AMD11_RS04520 PF02810 SEC-C motif AMD11_RS04520 PF07516 SecA Wing and Scaffold domain AMD11_RS04520 PF07517 SecA DEAD-like domain AMD11_RS04525 PF00293 NUDIX domain AMD11_RS04525 PF02581 Thiamine monophosphate synthase/TENI AMD11_RS04535 PF02219 Methylenetetrahydrofolate reductase AMD11_RS04540 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD11_RS04545 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS04545 PF13602 Zinc-binding dehydrogenase AMD11_RS04550 PF00082 Subtilase family AMD11_RS04550 PF09286 Pro-kumamolisin, activation domain AMD11_RS04560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD11_RS04565 PF00128 Alpha amylase, catalytic domain AMD11_RS04575 PF09831 AMD11_RS04575 AMD11_RS04580 PF11539 Protein of unknown function (DUF3228) AMD11_RS04590 PF00685 Sulfotransferase domain AMD11_RS04595 PF13649 Methyltransferase domain AMD11_RS04600 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD11_RS04600 PF05221 S-adenosyl-L-homocysteine hydrolase AMD11_RS04605 PF00326 Prolyl oligopeptidase family AMD11_RS04610 PF00311 Phosphoenolpyruvate carboxylase AMD11_RS04615 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS04620 PF13387 AMD11_RS04620 AMD11_RS04635 PF00593 TonB dependent receptor AMD11_RS04635 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS04640 PF00328 Histidine phosphatase superfamily (branch 2) AMD11_RS04645 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMD11_RS04645 PF02772 S-adenosylmethionine synthetase, central domain AMD11_RS04645 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMD11_RS04650 PF04307 AMD11_RS04650 AMD11_RS04655 PF08241 Methyltransferase domain AMD11_RS04660 PF01207 Dihydrouridine synthase (Dus) AMD11_RS04665 PF08306 Glycosyl hydrolase family 98 AMD11_RS04665 PF08307 Glycosyl hydrolase family 98 C-terminal domain AMD11_RS04665 PF16990 AMD11_RS04665 AMD11_RS04670 PF00294 pfkB family carbohydrate kinase AMD11_RS04675 PF01773 Na+ dependent nucleoside transporter N-terminus AMD11_RS04675 PF07662 Na+ dependent nucleoside transporter C-terminus AMD11_RS04675 PF07670 Nucleoside recognition AMD11_RS04680 PF00248 Aldo/keto reductase family AMD11_RS04685 PF10636 Hemin uptake protein hemP AMD11_RS04690 PF00593 TonB dependent receptor AMD11_RS04690 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS04705 PF04342 AMD11_RS04705 AMD11_RS04710 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS04715 PF00005 ABC transporter AMD11_RS04720 PF13379 NMT1-like family AMD11_RS04725 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMD11_RS04730 PF02687 AMD11_RS04730 AMD11_RS04735 PF00005 ABC transporter AMD11_RS04740 PF13472 GDSL-like Lipase/Acylhydrolase family AMD11_RS04745 PF00072 Response regulator receiver domain AMD11_RS04745 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS04750 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS04755 PF13472 GDSL-like Lipase/Acylhydrolase family AMD11_RS04760 PF01219 Prokaryotic diacylglycerol kinase AMD11_RS04765 PF04011 LemA family AMD11_RS04770 PF04536 TLP18 AMD11_RS04775 PF04536 TLP18 AMD11_RS04780 PF01790 AMD11_RS04780 AMD11_RS04785 PF00303 Thymidylate synthase AMD11_RS04795 PF00186 Dihydrofolate reductase AMD11_RS04800 PF00158 Sigma-54 interaction domain AMD11_RS04805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS04805 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS04810 PF00005 ABC transporter AMD11_RS04815 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS04820 PF09084 NMT1/THI5 like AMD11_RS04825 PF00296 Luciferase-like monooxygenase AMD11_RS04830 PF03358 NADPH-dependent FMN reductase AMD11_RS04835 PF00593 TonB dependent receptor AMD11_RS04835 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS04845 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS04850 PF00296 Luciferase-like monooxygenase AMD11_RS04855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD11_RS04860 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS04865 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS04870 PF00005 ABC transporter AMD11_RS04870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD11_RS04875 PF00149 Calcineurin-like phosphoesterase AMD11_RS04880 PF04379 Protein of unknown function (DUF525) AMD11_RS04885 PF00398 Ribosomal RNA adenine dimethylase AMD11_RS04890 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMD11_RS04895 PF00639 PPIC-type PPIASE domain AMD11_RS04895 PF09312 SurA N-terminal domain AMD11_RS04895 PF13616 PPIC-type PPIASE domain AMD11_RS04900 PF03968 OstA-like protein AMD11_RS04900 PF04453 Organic solvent tolerance protein AMD11_RS04905 PF00850 Histone deacetylase domain AMD11_RS04910 PF00850 Histone deacetylase domain AMD11_RS04915 PF01923 Cobalamin adenosyltransferase AMD11_RS04925 PF01494 FAD binding domain AMD11_RS04930 PF01494 FAD binding domain AMD11_RS04935 PF12697 Alpha/beta hydrolase family AMD11_RS04940 PF13577 SnoaL-like domain AMD11_RS04945 PF13557 AMD11_RS04945 AMD11_RS04950 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS04950 PF07729 FCD domain AMD11_RS04955 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD11_RS04960 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AMD11_RS04965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS04965 PF03466 LysR substrate binding domain AMD11_RS04970 PF00501 AMP-binding enzyme AMD11_RS04970 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS04975 PF00171 Aldehyde dehydrogenase family AMD11_RS04980 PF00378 Enoyl-CoA hydratase/isomerase family AMD11_RS04985 PF12802 MarR family AMD11_RS04990 PF13202 EF hand AMD11_RS05000 PF08450 SMP-30/Gluconolaconase/LRE-like region AMD11_RS05005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD11_RS05010 PF01728 FtsJ-like methyltransferase AMD11_RS05015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD11_RS05045 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD11_RS05045 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMD11_RS05050 PF13409 Glutathione S-transferase, N-terminal domain AMD11_RS05055 PF09413 Domain of unknown function (DUF2007) AMD11_RS05060 PF00072 Response regulator receiver domain AMD11_RS05065 PF00072 Response regulator receiver domain AMD11_RS05065 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS05065 PF00672 HAMP domain AMD11_RS05065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS05065 PF05227 CHASE3 domain AMD11_RS05070 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS05075 PF08332 Calcium/calmodulin dependent protein kinase II Association AMD11_RS05080 PF01625 Peptide methionine sulfoxide reductase AMD11_RS05085 PF01965 DJ-1/PfpI family AMD11_RS05090 PF00923 Transaldolase AMD11_RS05095 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD11_RS05095 PF14760 Rnk N-terminus AMD11_RS05100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS05100 PF03466 LysR substrate binding domain AMD11_RS05105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS05105 PF13192 Thioredoxin domain AMD11_RS05110 PF00578 AhpC/TSA family AMD11_RS05110 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD11_RS05115 PF05175 Methyltransferase small domain AMD11_RS05120 PF00561 alpha/beta hydrolase fold AMD11_RS05125 PF05013 N-formylglutamate amidohydrolase AMD11_RS05130 PF00293 NUDIX domain AMD11_RS05135 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD11_RS05135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD11_RS05140 PF00881 Nitroreductase family AMD11_RS05145 PF07793 AMD11_RS05145 AMD11_RS05150 PF07793 AMD11_RS05150 AMD11_RS05155 PF12146 Putative lysophospholipase AMD11_RS05160 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS05160 PF13305 WHG domain AMD11_RS05165 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMD11_RS05165 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMD11_RS05170 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMD11_RS05175 PF11304 AMD11_RS05175 AMD11_RS05185 PF04542 Sigma-70 region 2 AMD11_RS05185 PF08281 Sigma-70, region 4 AMD11_RS05190 PF12769 Domain of unknown function (DUF3814) AMD11_RS05195 PF02233 NAD(P) transhydrogenase beta subunit AMD11_RS05205 PF01883 Domain of unknown function DUF59 AMD11_RS05210 PF01063 Aminotransferase class IV AMD11_RS05215 PF00082 Subtilase family AMD11_RS05215 PF04151 Bacterial pre-peptidase C-terminal domain AMD11_RS05220 PF00082 Subtilase family AMD11_RS05225 PF00082 Subtilase family AMD11_RS05225 PF04151 Bacterial pre-peptidase C-terminal domain AMD11_RS05230 PF04073 Aminoacyl-tRNA editing domain AMD11_RS05235 PF00710 Asparaginase AMD11_RS05245 PF09842 AMD11_RS05245 AMD11_RS05250 PF03358 NADPH-dependent FMN reductase AMD11_RS05255 PF03631 AMD11_RS05255 AMD11_RS05260 PF00578 AhpC/TSA family AMD11_RS05265 PF00708 Acylphosphatase AMD11_RS05275 PF03976 Polyphosphate kinase 2 (PPK2) AMD11_RS05280 PF00994 Probable molybdopterin binding domain AMD11_RS05285 PF13844 Glycosyl transferase family 41 AMD11_RS05285 PF14559 Tetratricopeptide repeat AMD11_RS05290 PF00472 RF-1 domain AMD11_RS05290 PF03462 PCRF domain AMD11_RS05295 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMD11_RS05295 PF01488 Shikimate / quinate 5-dehydrogenase AMD11_RS05295 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMD11_RS05300 PF13429 Tetratricopeptide repeat AMD11_RS05305 PF03550 Outer membrane lipoprotein LolB AMD11_RS05310 PF00288 GHMP kinases N terminal domain AMD11_RS05310 PF08544 GHMP kinases C terminal AMD11_RS05320 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD11_RS05320 PF14572 Phosphoribosyl synthetase-associated domain AMD11_RS05325 PF01386 Ribosomal L25p family AMD11_RS05325 PF14693 Ribosomal protein TL5, C-terminal domain AMD11_RS05330 PF01195 Peptidyl-tRNA hydrolase AMD11_RS05335 PF01926 50S ribosome-binding GTPase AMD11_RS05335 PF06071 Protein of unknown function (DUF933) AMD11_RS05355 PF00009 Elongation factor Tu GTP binding domain AMD11_RS05355 PF03143 Elongation factor Tu C-terminal domain AMD11_RS05355 PF03144 Elongation factor Tu domain 2 AMD11_RS05365 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMD11_RS05370 PF00467 KOW motif AMD11_RS05370 PF02357 Transcription termination factor nusG AMD11_RS05375 PF00298 Ribosomal protein L11, RNA binding domain AMD11_RS05375 PF03946 Ribosomal protein L11, N-terminal domain AMD11_RS05380 PF00687 Ribosomal protein L1p/L10e family AMD11_RS05385 PF00466 Ribosomal protein L10 AMD11_RS05390 PF00542 Ribosomal protein L7/L12 C-terminal domain AMD11_RS05390 PF16320 AMD11_RS05390 AMD11_RS05395 PF00562 RNA polymerase Rpb2, domain 6 AMD11_RS05395 PF04560 RNA polymerase Rpb2, domain 7 AMD11_RS05395 PF04561 RNA polymerase Rpb2, domain 2 AMD11_RS05395 PF04563 RNA polymerase beta subunit AMD11_RS05395 PF04565 RNA polymerase Rpb2, domain 3 AMD11_RS05395 PF10385 RNA polymerase beta subunit external 1 domain AMD11_RS05400 PF00623 RNA polymerase Rpb1, domain 2 AMD11_RS05400 PF04983 RNA polymerase Rpb1, domain 3 AMD11_RS05400 PF04997 RNA polymerase Rpb1, domain 1 AMD11_RS05400 PF04998 RNA polymerase Rpb1, domain 5 AMD11_RS05400 PF05000 RNA polymerase Rpb1, domain 4 AMD11_RS05405 PF00164 Ribosomal protein S12/S23 AMD11_RS05410 PF00177 Ribosomal protein S7p/S5e AMD11_RS05415 PF00009 Elongation factor Tu GTP binding domain AMD11_RS05415 PF00679 Elongation factor G C-terminus AMD11_RS05415 PF03144 Elongation factor Tu domain 2 AMD11_RS05415 PF03764 Elongation factor G, domain IV AMD11_RS05415 PF14492 Elongation Factor G, domain II AMD11_RS05420 PF00009 Elongation factor Tu GTP binding domain AMD11_RS05420 PF03143 Elongation factor Tu C-terminal domain AMD11_RS05420 PF03144 Elongation factor Tu domain 2 AMD11_RS05425 PF00338 Ribosomal protein S10p/S20e AMD11_RS05430 PF00297 Ribosomal protein L3 AMD11_RS05435 PF00573 Ribosomal protein L4/L1 family AMD11_RS05440 PF00276 Ribosomal protein L23 AMD11_RS05445 PF00181 Ribosomal Proteins L2, RNA binding domain AMD11_RS05445 PF03947 Ribosomal Proteins L2, C-terminal domain AMD11_RS05450 PF00203 Ribosomal protein S19 AMD11_RS05455 PF00237 Ribosomal protein L22p/L17e AMD11_RS05460 PF00189 Ribosomal protein S3, C-terminal domain AMD11_RS05460 PF07650 KH domain AMD11_RS05465 PF00252 Ribosomal protein L16p/L10e AMD11_RS05470 PF00831 Ribosomal L29 protein AMD11_RS05475 PF00366 Ribosomal protein S17 AMD11_RS05480 PF00238 Ribosomal protein L14p/L23e AMD11_RS05485 PF00467 KOW motif AMD11_RS05485 PF17136 AMD11_RS05485 AMD11_RS05490 PF00281 Ribosomal protein L5 AMD11_RS05490 PF00673 ribosomal L5P family C-terminus AMD11_RS05495 PF00253 Ribosomal protein S14p/S29e AMD11_RS05500 PF00410 Ribosomal protein S8 AMD11_RS05505 PF00347 Ribosomal protein L6 AMD11_RS05510 PF00861 Ribosomal L18p/L5e family AMD11_RS05515 PF00333 Ribosomal protein S5, N-terminal domain AMD11_RS05515 PF03719 Ribosomal protein S5, C-terminal domain AMD11_RS05520 PF00327 Ribosomal protein L30p/L7e AMD11_RS05525 PF00828 Ribosomal protein L18e/L15 AMD11_RS05530 PF00344 SecY translocase AMD11_RS05535 PF00416 Ribosomal protein S13/S18 AMD11_RS05540 PF00411 Ribosomal protein S11 AMD11_RS05545 PF00163 Ribosomal protein S4/S9 N-terminal domain AMD11_RS05545 PF01479 S4 domain AMD11_RS05550 PF01000 RNA polymerase Rpb3/RpoA insert domain AMD11_RS05550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMD11_RS05550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMD11_RS05555 PF01196 Ribosomal protein L17 AMD11_RS05560 PF02600 Disulfide bond formation protein DsbB AMD11_RS05570 PF00593 TonB dependent receptor AMD11_RS05570 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS05575 PF01474 Class-II DAHP synthetase family AMD11_RS05580 PF00924 Mechanosensitive ion channel AMD11_RS05585 PF01425 Amidase AMD11_RS05590 PF09900 AMD11_RS05590 AMD11_RS05595 PF00009 Elongation factor Tu GTP binding domain AMD11_RS05595 PF00679 Elongation factor G C-terminus AMD11_RS05595 PF03144 Elongation factor Tu domain 2 AMD11_RS05600 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD11_RS05605 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD11_RS05605 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD11_RS05610 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS05610 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS05615 PF07486 Cell Wall Hydrolase AMD11_RS05620 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD11_RS05620 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS05625 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS05625 PF13602 Zinc-binding dehydrogenase AMD11_RS05630 PF00691 OmpA family AMD11_RS05630 PF13505 Outer membrane protein beta-barrel domain AMD11_RS05640 PF00849 RNA pseudouridylate synthase AMD11_RS05640 PF01479 S4 domain AMD11_RS05650 PF00155 Aminotransferase class I and II AMD11_RS05655 PF13531 Bacterial extracellular solute-binding protein AMD11_RS05660 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS05665 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS05670 PF00005 ABC transporter AMD11_RS05670 PF12857 AMD11_RS05670 AMD11_RS05675 PF09694 AMD11_RS05675 AMD11_RS05680 PF00107 Zinc-binding dehydrogenase AMD11_RS05680 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS05690 PF00593 TonB dependent receptor AMD11_RS05690 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS05695 PF04185 Phosphoesterase family AMD11_RS05695 PF05506 AMD11_RS05695 AMD11_RS05700 PF10459 Peptidase S46 AMD11_RS05705 PF10459 Peptidase S46 AMD11_RS05710 PF00300 Histidine phosphatase superfamily (branch 1) AMD11_RS05715 PF08245 Mur ligase middle domain AMD11_RS05720 PF05036 Sporulation related domain AMD11_RS05725 PF02674 AMD11_RS05725 AMD11_RS05730 PF13522 Glutamine amidotransferase domain AMD11_RS05735 PF04305 AMD11_RS05735 AMD11_RS05745 PF13688 Metallo-peptidase family M12 AMD11_RS05755 PF00149 Calcineurin-like phosphoesterase AMD11_RS05760 PF01569 PAP2 superfamily AMD11_RS05765 PF00534 Glycosyl transferases group 1 AMD11_RS05765 PF13439 Glycosyltransferase Family 4 AMD11_RS05770 PF02541 Ppx/GppA phosphatase family AMD11_RS05775 PF02503 Polyphosphate kinase middle domain AMD11_RS05775 PF13089 Polyphosphate kinase N-terminal domain AMD11_RS05775 PF13090 Polyphosphate kinase C-terminal domain AMD11_RS05780 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS05780 PF11808 AMD11_RS05780 AMD11_RS05785 PF00072 Response regulator receiver domain AMD11_RS05785 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS05790 PF01435 Peptidase family M48 AMD11_RS05795 PF00462 Glutaredoxin AMD11_RS05800 PF02627 Carboxymuconolactone decarboxylase family AMD11_RS05805 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD11_RS05810 PF12811 AMD11_RS05810 AMD11_RS05835 PF13333 AMD11_RS05835 AMD11_RS05845 PF01527 Transposase AMD11_RS05880 PF07275 Antirestriction protein (ArdA) AMD11_RS05900 PF00959 Phage lysozyme AMD11_RS05915 PF04550 AMD11_RS05915 AMD11_RS05930 PF01527 Transposase AMD11_RS05935 PF00665 Integrase core domain AMD11_RS05935 PF13276 AMD11_RS05935 AMD11_RS05940 PF14700 DNA-directed RNA polymerase N-terminal AMD11_RS05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS05960 PF05697 Bacterial trigger factor protein (TF) AMD11_RS05960 PF05698 Bacterial trigger factor protein (TF) C-terminus AMD11_RS05965 PF00574 Clp protease AMD11_RS05970 PF06689 ClpX C4-type zinc finger AMD11_RS05970 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS05970 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS05975 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS05975 PF02190 ATP-dependent protease La (LON) domain AMD11_RS05975 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD11_RS05980 PF00216 Bacterial DNA-binding protein AMD11_RS06000 PF13145 PPIC-type PPIASE domain AMD11_RS06000 PF13616 PPIC-type PPIASE domain AMD11_RS06000 PF13623 AMD11_RS06000 AMD11_RS06005 PF01464 Transglycosylase SLT domain AMD11_RS06005 PF01476 LysM domain AMD11_RS06010 PF00753 Metallo-beta-lactamase superfamily AMD11_RS06010 PF16123 AMD11_RS06010 AMD11_RS06020 PF00075 RNase H AMD11_RS06025 PF00929 Exonuclease AMD11_RS06030 PF13672 Protein phosphatase 2C AMD11_RS06045 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMD11_RS06050 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family AMD11_RS06055 PF12706 Beta-lactamase superfamily domain AMD11_RS06060 PF04055 Radical SAM superfamily AMD11_RS06060 PF06463 Molybdenum Cofactor Synthesis C AMD11_RS06060 PF13353 4Fe-4S single cluster domain AMD11_RS06070 PF01967 MoaC family AMD11_RS06075 PF02597 ThiS family AMD11_RS06080 PF02391 MoaE protein AMD11_RS06085 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06090 PF01527 Transposase AMD11_RS06100 PF13333 AMD11_RS06100 AMD11_RS06105 PF03389 MobA/MobL family AMD11_RS06120 PF00589 Phage integrase family AMD11_RS06130 PF12169 DNA polymerase III subunits gamma and tau domain III AMD11_RS06130 PF12170 DNA polymerase III tau subunit V interacting with alpha AMD11_RS06130 PF13177 DNA polymerase III, delta subunit AMD11_RS06135 PF02575 YbaB/EbfC DNA-binding family AMD11_RS06140 PF02132 RecR protein AMD11_RS06140 PF13662 Toprim domain AMD11_RS06145 PF01230 HIT domain AMD11_RS06150 PF03843 AMD11_RS06150 AMD11_RS06155 PF01841 Transglutaminase-like superfamily AMD11_RS06155 PF11992 AMD11_RS06155 AMD11_RS06160 PF01882 AMD11_RS06160 AMD11_RS06165 PF07726 ATPase family associated with various cellular activities (AAA) AMD11_RS06170 PF13231 AMD11_RS06170 AMD11_RS06185 PF02545 Maf-like protein AMD11_RS06190 PF02620 AMD11_RS06190 AMD11_RS06195 PF01783 Ribosomal L32p protein family AMD11_RS06200 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD11_RS06200 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD11_RS06205 PF08670 AMD11_RS06205 AMD11_RS06210 PF00698 Acyl transferase domain AMD11_RS06215 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS06220 PF00550 Phosphopantetheine attachment site AMD11_RS06225 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD11_RS06225 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD11_RS06230 PF00425 chorismate binding enzyme AMD11_RS06235 PF02618 YceG-like family AMD11_RS06240 PF13177 DNA polymerase III, delta subunit AMD11_RS06245 PF07238 PilZ domain AMD11_RS06260 PF00158 Sigma-54 interaction domain AMD11_RS06260 PF02954 Bacterial regulatory protein, Fis family AMD11_RS06260 PF06506 Propionate catabolism activator AMD11_RS06265 PF13714 Phosphoenolpyruvate phosphomutase AMD11_RS06270 PF00285 Citrate synthase AMD11_RS06275 PF00330 Aconitase family (aconitate hydratase) AMD11_RS06275 PF00694 Aconitase C-terminal domain AMD11_RS06280 PF03693 Uncharacterised protein family (UPF0156) AMD11_RS06285 PF04303 PrpF protein AMD11_RS06290 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS06295 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD11_RS06300 PF00207 Alpha-2-macroglobulin family AMD11_RS06300 PF01835 MG2 domain AMD11_RS06300 PF07703 Alpha-2-macroglobulin family N-terminal region AMD11_RS06300 PF11974 Alpha-2-macroglobulin MG1 domain AMD11_RS06305 PF00593 TonB dependent receptor AMD11_RS06305 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS06310 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD11_RS06310 PF16387 AMD11_RS06310 AMD11_RS06315 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS06315 PF00912 Transglycosylase AMD11_RS06315 PF06832 AMD11_RS06315 AMD11_RS06320 PF00210 Ferritin-like domain AMD11_RS06325 PF08534 Redoxin AMD11_RS06330 PF00011 Hsp20/alpha crystallin family AMD11_RS06335 PF00226 DnaJ domain AMD11_RS06335 PF01556 DnaJ C terminal domain AMD11_RS06340 PF00072 Response regulator receiver domain AMD11_RS06345 PF01145 SPFH domain / Band 7 family AMD11_RS06350 PF01145 SPFH domain / Band 7 family AMD11_RS06355 PF01797 Transposase IS200 like AMD11_RS06360 PF00709 Adenylosuccinate synthetase AMD11_RS06365 PF01433 Peptidase family M1 AMD11_RS06365 PF11838 ERAP1-like C-terminal domain AMD11_RS06375 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS06380 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS06420 PF05016 Plasmid stabilisation system protein AMD11_RS06430 PF00069 Protein kinase domain AMD11_RS06440 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS06445 PF00300 Histidine phosphatase superfamily (branch 1) AMD11_RS06450 PF01256 Carbohydrate kinase AMD11_RS06455 PF02055 O-Glycosyl hydrolase family 30 AMD11_RS06455 PF17189 AMD11_RS06455 AMD11_RS06460 PF00723 Glycosyl hydrolases family 15 AMD11_RS06465 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS06470 PF07971 Glycosyl hydrolase family 92 AMD11_RS06475 PF00106 short chain dehydrogenase AMD11_RS06485 PF13532 2OG-Fe(II) oxygenase superfamily AMD11_RS06490 PF00027 Cyclic nucleotide-binding domain AMD11_RS06490 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS06495 PF02148 Zn-finger in ubiquitin-hydrolases and other protein AMD11_RS06500 PF00563 EAL domain AMD11_RS06505 PF13328 HD domain AMD11_RS06510 PF00005 ABC transporter AMD11_RS06515 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD11_RS06515 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD11_RS06520 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD11_RS06520 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD11_RS06525 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS06525 PF01799 [2Fe-2S] binding domain AMD11_RS06530 PF05559 AMD11_RS06530 AMD11_RS06540 PF07883 Cupin domain AMD11_RS06550 PF02661 Fic/DOC family AMD11_RS06555 PF04014 Antidote-toxin recognition MazE AMD11_RS06560 PF00717 Peptidase S24-like AMD11_RS06560 PF01726 LexA DNA binding domain AMD11_RS06570 PF00817 impB/mucB/samB family AMD11_RS06575 PF02811 PHP domain AMD11_RS06575 PF07733 Bacterial DNA polymerase III alpha subunit AMD11_RS06575 PF14579 Helix-hairpin-helix motif AMD11_RS06580 PF00326 Prolyl oligopeptidase family AMD11_RS06585 PF08668 HDOD domain AMD11_RS06590 PF03169 AMD11_RS06590 AMD11_RS06595 PF13557 AMD11_RS06595 AMD11_RS06605 PF00326 Prolyl oligopeptidase family AMD11_RS06605 PF07676 WD40-like Beta Propeller Repeat AMD11_RS06620 PF08448 PAS fold AMD11_RS06620 PF12833 Helix-turn-helix domain AMD11_RS06635 PF00199 Catalase AMD11_RS06635 PF06628 Catalase-related immune-responsive AMD11_RS06640 PF00248 Aldo/keto reductase family AMD11_RS06645 PF00135 Carboxylesterase family AMD11_RS06650 PF02347 Glycine cleavage system P-protein AMD11_RS06655 PF07690 Major Facilitator Superfamily AMD11_RS06665 PF01401 Angiotensin-converting enzyme AMD11_RS06670 PF00884 Sulfatase AMD11_RS06670 PF08019 AMD11_RS06670 AMD11_RS06675 PF01569 PAP2 superfamily AMD11_RS06680 PF13231 AMD11_RS06680 AMD11_RS06685 PF00072 Response regulator receiver domain AMD11_RS06685 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS06690 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06700 PF03776 Septum formation topological specificity factor MinE AMD11_RS06705 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD11_RS06710 PF03775 Septum formation inhibitor MinC, C-terminal domain AMD11_RS06710 PF05209 Septum formation inhibitor MinC, N-terminal domain AMD11_RS06715 PF00583 Acetyltransferase (GNAT) family AMD11_RS06725 PF07730 Histidine kinase AMD11_RS06730 PF00072 Response regulator receiver domain AMD11_RS06730 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS06735 PF10604 Polyketide cyclase / dehydrase and lipid transport AMD11_RS06740 PF04241 AMD11_RS06740 AMD11_RS06745 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD11_RS06750 PF02557 D-alanyl-D-alanine carboxypeptidase AMD11_RS06765 PF01145 SPFH domain / Band 7 family AMD11_RS06770 PF02222 ATP-grasp domain AMD11_RS06775 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS06780 PF04376 AMD11_RS06780 AMD11_RS06780 PF04377 AMD11_RS06780 AMD11_RS06785 PF13202 EF hand AMD11_RS06785 PF13499 EF-hand domain pair AMD11_RS06795 PF09413 Domain of unknown function (DUF2007) AMD11_RS06800 PF13622 Thioesterase-like superfamily AMD11_RS06805 PF00378 Enoyl-CoA hydratase/isomerase family AMD11_RS06810 PF04314 Protein of unknown function (DUF461) AMD11_RS06815 PF13279 Thioesterase-like superfamily AMD11_RS06820 PF00005 ABC transporter AMD11_RS06825 PF00829 Ribosomal prokaryotic L21 protein AMD11_RS06830 PF01016 Ribosomal L27 protein AMD11_RS06835 PF01018 GTP1/OBG AMD11_RS06835 PF01926 50S ribosome-binding GTPase AMD11_RS06840 PF01649 Ribosomal protein S20 AMD11_RS06845 PF03023 AMD11_RS06845 AMD11_RS06850 PF01687 Riboflavin kinase AMD11_RS06850 PF06574 FAD synthetase AMD11_RS06855 PF00133 tRNA synthetases class I (I, L, M and V) AMD11_RS06855 PF06827 Zinc finger found in FPG and IleRS AMD11_RS06855 PF08264 Anticodon-binding domain of tRNA AMD11_RS06860 PF01252 AMD11_RS06860 AMD11_RS06865 PF02401 LytB protein AMD11_RS06875 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD11_RS06875 PF06481 COX Aromatic Rich Motif AMD11_RS06880 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD11_RS06885 PF00510 Cytochrome c oxidase subunit III AMD11_RS06890 PF03626 AMD11_RS06890 AMD11_RS06895 PF05299 M61 glycyl aminopeptidase AMD11_RS06895 PF07720 Tetratricopeptide repeat AMD11_RS06900 PF13481 AAA domain AMD11_RS06900 PF13541 Subunit ChlI of Mg-chelatase AMD11_RS06905 PF05656 AMD11_RS06905 AMD11_RS06910 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS06915 PF12833 Helix-turn-helix domain AMD11_RS06920 PF00183 Hsp90 protein AMD11_RS06920 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06930 PF01740 STAS domain AMD11_RS06930 PF14361 AMD11_RS06930 AMD11_RS06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06945 PF07228 Stage II sporulation protein E (SpoIIE) AMD11_RS06945 PF13581 Histidine kinase-like ATPase domain AMD11_RS06950 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06955 PF00072 Response regulator receiver domain AMD11_RS06955 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06955 PF08448 PAS fold AMD11_RS06960 PF04616 Glycosyl hydrolases family 43 AMD11_RS06965 PF00593 TonB dependent receptor AMD11_RS06965 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS06970 PF00085 Thioredoxin AMD11_RS06975 PF07237 Protein of unknown function (DUF1428) AMD11_RS06980 PF00072 Response regulator receiver domain AMD11_RS06980 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06985 PF01339 CheB methylesterase AMD11_RS06990 PF01739 CheR methyltransferase, SAM binding domain AMD11_RS06990 PF03705 CheR methyltransferase, all-alpha domain AMD11_RS06995 PF00072 Response regulator receiver domain AMD11_RS06995 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS06995 PF13185 GAF domain AMD11_RS07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS07000 PF13426 PAS domain AMD11_RS07005 PF00072 Response regulator receiver domain AMD11_RS07010 PF00722 Glycosyl hydrolases family 16 AMD11_RS07015 PF06964 Alpha-L-arabinofuranosidase C-terminus AMD11_RS07025 PF01263 Aldose 1-epimerase AMD11_RS07030 PF01578 AMD11_RS07030 AMD11_RS07035 PF00448 SRP54-type protein, GTPase domain AMD11_RS07035 PF02881 SRP54-type protein, helical bundle domain AMD11_RS07035 PF02978 Signal peptide binding domain AMD11_RS07040 PF03060 Nitronate monooxygenase AMD11_RS07045 PF01063 Aminotransferase class IV AMD11_RS07050 PF00886 Ribosomal protein S16 AMD11_RS07055 PF01782 RimM N-terminal domain AMD11_RS07055 PF05239 PRC-barrel domain AMD11_RS07060 PF01746 tRNA (Guanine-1)-methyltransferase AMD11_RS07065 PF01245 Ribosomal protein L19 AMD11_RS07080 PF08279 HTH domain AMD11_RS07080 PF13280 AMD11_RS07080 AMD11_RS07085 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS07085 PF13417 Glutathione S-transferase, N-terminal domain AMD11_RS07090 PF01479 S4 domain AMD11_RS07095 PF00141 Peroxidase AMD11_RS07100 PF06078 Bacterial protein of unknown function (DUF937) AMD11_RS07105 PF00488 MutS domain V AMD11_RS07105 PF01624 MutS domain I AMD11_RS07105 PF05188 MutS domain II AMD11_RS07105 PF05190 MutS family domain IV AMD11_RS07105 PF05192 MutS domain III AMD11_RS07110 PF05593 AMD11_RS07110 AMD11_RS07115 PF16158 AMD11_RS07115 AMD11_RS07120 PF14085 AMD11_RS07120 AMD11_RS07125 PF00754 F5/8 type C domain AMD11_RS07125 PF01120 Alpha-L-fucosidase AMD11_RS07135 PF00703 Glycosyl hydrolases family 2 AMD11_RS07135 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD11_RS07135 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD11_RS07135 PF16355 AMD11_RS07135 AMD11_RS07140 PF07745 Glycosyl hydrolase family 53 AMD11_RS07145 PF00593 TonB dependent receptor AMD11_RS07145 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS07150 PF06114 Domain of unknown function (DUF955) AMD11_RS07150 PF09856 AMD11_RS07150 AMD11_RS07150 PF13560 Helix-turn-helix domain AMD11_RS07155 PF00171 Aldehyde dehydrogenase family AMD11_RS07160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS07160 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS07160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS07165 PF00378 Enoyl-CoA hydratase/isomerase family AMD11_RS07170 PF16113 AMD11_RS07170 AMD11_RS07175 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD11_RS07175 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD11_RS07180 PF01545 Cation efflux family AMD11_RS07185 PF00378 Enoyl-CoA hydratase/isomerase family AMD11_RS07185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD11_RS07185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD11_RS07190 PF04542 Sigma-70 region 2 AMD11_RS07190 PF08281 Sigma-70, region 4 AMD11_RS07195 PF03872 Anti sigma-E protein RseA, N-terminal domain AMD11_RS07200 PF13180 PDZ domain AMD11_RS07200 PF13365 Trypsin-like peptidase domain AMD11_RS07205 PF00009 Elongation factor Tu GTP binding domain AMD11_RS07205 PF00679 Elongation factor G C-terminus AMD11_RS07205 PF03144 Elongation factor Tu domain 2 AMD11_RS07205 PF06421 GTP-binding protein LepA C-terminus AMD11_RS07210 PF00717 Peptidase S24-like AMD11_RS07215 PF16137 AMD11_RS07215 AMD11_RS07220 PF00035 Double-stranded RNA binding motif AMD11_RS07220 PF14622 Ribonuclease-III-like AMD11_RS07225 PF01926 50S ribosome-binding GTPase AMD11_RS07225 PF07650 KH domain AMD11_RS07230 PF02565 Recombination protein O C terminal AMD11_RS07230 PF11967 Recombination protein O N terminal AMD11_RS07235 PF00072 Response regulator receiver domain AMD11_RS07235 PF01627 Hpt domain AMD11_RS07240 PF05958 tRNA (Uracil-5-)-methyltransferase AMD11_RS07245 PF01928 CYTH domain AMD11_RS07250 PF01323 DSBA-like thioredoxin domain AMD11_RS07255 PF13450 NAD(P)-binding Rossmann-like domain AMD11_RS07260 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMD11_RS07265 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS07270 PF00156 Phosphoribosyl transferase domain AMD11_RS07275 PF01048 Phosphorylase superfamily AMD11_RS07280 PF00313 'Cold-shock' DNA-binding domain AMD11_RS07285 PF01494 FAD binding domain AMD11_RS07290 PF00149 Calcineurin-like phosphoesterase AMD11_RS07295 PF00270 DEAD/DEAH box helicase AMD11_RS07295 PF00271 Helicase conserved C-terminal domain AMD11_RS07295 PF08494 AMD11_RS07295 AMD11_RS07300 PF01068 ATP dependent DNA ligase domain AMD11_RS07300 PF04675 DNA ligase N terminus AMD11_RS07300 PF04679 ATP dependent DNA ligase C terminal region AMD11_RS07320 PF04519 AMD11_RS07320 AMD11_RS07325 PF00990 GGDEF domain AMD11_RS07325 PF05227 CHASE3 domain AMD11_RS07325 PF13185 GAF domain AMD11_RS07340 PF00108 Thiolase, N-terminal domain AMD11_RS07340 PF02803 Thiolase, C-terminal domain AMD11_RS07345 PF00082 Subtilase family AMD11_RS07345 PF03797 Autotransporter beta-domain AMD11_RS07345 PF12951 AMD11_RS07345 AMD11_RS07350 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD11_RS07350 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMD11_RS07355 PF13640 2OG-Fe(II) oxygenase superfamily AMD11_RS07360 PF01863 Protein of unknown function DUF45 AMD11_RS07365 PF07043 AMD11_RS07365 AMD11_RS07370 PF10982 Protein of unknown function (DUF2789) AMD11_RS07375 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD11_RS07380 PF00924 Mechanosensitive ion channel AMD11_RS07395 PF06723 MreB/Mbl protein AMD11_RS07400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS07405 PF01545 Cation efflux family AMD11_RS07410 PF03831 PhnA protein AMD11_RS07410 PF08274 PhnA Zinc-Ribbon AMD11_RS07415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD11_RS07420 PF07690 Major Facilitator Superfamily AMD11_RS07430 PF09537 Domain of unknown function (DUF2383) AMD11_RS07435 PF13563 2'-5' RNA ligase superfamily AMD11_RS07445 PF09791 AMD11_RS07445 AMD11_RS07450 PF06057 Bacterial virulence protein (VirJ) AMD11_RS07455 PF03706 AMD11_RS07455 AMD11_RS07455 PF09924 Uncharacterized conserved protein (DUF2156) AMD11_RS07460 PF06197 AMD11_RS07460 AMD11_RS07465 PF01042 Endoribonuclease L-PSP AMD11_RS07470 PF02353 Mycolic acid cyclopropane synthetase AMD11_RS07475 PF06966 AMD11_RS07475 AMD11_RS07480 PF11086 AMD11_RS07480 AMD11_RS07485 PF02353 Mycolic acid cyclopropane synthetase AMD11_RS07490 PF07103 AMD11_RS07490 AMD11_RS07495 PF01593 Flavin containing amine oxidoreductase AMD11_RS07500 PF00487 AMD11_RS07500 AMD11_RS07505 PF10099 AMD11_RS07505 AMD11_RS07510 PF04542 Sigma-70 region 2 AMD11_RS07510 PF08281 Sigma-70, region 4 AMD11_RS07530 PF04060 Putative Fe-S cluster AMD11_RS07530 PF14697 4Fe-4S dicluster domain AMD11_RS07535 PF12710 haloacid dehalogenase-like hydrolase AMD11_RS07540 PF01588 Putative tRNA binding domain AMD11_RS07540 PF09334 tRNA synthetases class I (M) AMD11_RS07545 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AMD11_RS07550 PF01433 Peptidase family M1 AMD11_RS07550 PF12679 AMD11_RS07550 AMD11_RS07555 PF00005 ABC transporter AMD11_RS07560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS07565 PF00324 Amino acid permease AMD11_RS07570 PF02574 Homocysteine S-methyltransferase AMD11_RS07575 PF05960 Bacterial protein of unknown function (DUF885) AMD11_RS07580 PF02592 AMD11_RS07580 AMD11_RS07585 PF04367 AMD11_RS07585 AMD11_RS07595 PF13372 Alginate export AMD11_RS07600 PF03551 Transcriptional regulator PadR-like family AMD11_RS07605 PF13796 AMD11_RS07605 AMD11_RS07610 PF06850 AMD11_RS07610 AMD11_RS07615 PF13489 Methyltransferase domain AMD11_RS07620 PF03653 AMD11_RS07620 AMD11_RS07630 PF14559 Tetratricopeptide repeat AMD11_RS07635 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMD11_RS07640 PF01336 OB-fold nucleic acid binding domain AMD11_RS07640 PF02811 PHP domain AMD11_RS07640 PF07733 Bacterial DNA polymerase III alpha subunit AMD11_RS07640 PF14579 Helix-hairpin-helix motif AMD11_RS07645 PF01351 Ribonuclease HII AMD11_RS07650 PF02684 AMD11_RS07650 AMD11_RS07655 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS07655 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMD11_RS07660 PF07977 FabA-like domain AMD11_RS07665 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS07665 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMD11_RS07675 PF01103 Surface antigen AMD11_RS07675 PF07244 Surface antigen variable number repeat AMD11_RS07680 PF02163 Peptidase family M50 AMD11_RS07685 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMD11_RS07685 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AMD11_RS07685 PF13288 DXP reductoisomerase C-terminal domain AMD11_RS07690 PF01148 Cytidylyltransferase family AMD11_RS07695 PF01255 Putative undecaprenyl diphosphate synthase AMD11_RS07700 PF01765 Ribosome recycling factor AMD11_RS07705 PF00696 Amino acid kinase family AMD11_RS07710 PF00990 GGDEF domain AMD11_RS07710 PF08668 HDOD domain AMD11_RS07715 PF00889 Elongation factor TS AMD11_RS07720 PF00318 Ribosomal protein S2 AMD11_RS07725 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AMD11_RS07735 PF05229 AMD11_RS07735 AMD11_RS07740 PF00577 Outer membrane usher protein AMD11_RS07740 PF13953 PapC C-terminal domain AMD11_RS07745 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AMD11_RS07750 PF05229 AMD11_RS07750 AMD11_RS07755 PF00557 Metallopeptidase family M24 AMD11_RS07760 PF01909 Nucleotidyltransferase domain AMD11_RS07760 PF01966 HD domain AMD11_RS07760 PF08335 GlnD PII-uridylyltransferase AMD11_RS07765 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS07765 PF14602 Hexapeptide repeat of succinyl-transferase AMD11_RS07765 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMD11_RS07770 PF03960 ArsC family AMD11_RS07775 PF01546 Peptidase family M20/M25/M40 AMD11_RS07775 PF07687 Peptidase dimerisation domain AMD11_RS07780 PF00733 Asparagine synthase AMD11_RS07780 PF13537 Glutamine amidotransferase domain AMD11_RS07785 PF13229 Right handed beta helix region AMD11_RS07790 PF00593 TonB dependent receptor AMD11_RS07790 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS07805 PF00210 Ferritin-like domain AMD11_RS07810 PF05724 Thiopurine S-methyltransferase (TPMT) AMD11_RS07820 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD11_RS07820 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD11_RS07825 PF02311 AraC-like ligand binding domain AMD11_RS07825 PF12833 Helix-turn-helix domain AMD11_RS07830 PF01047 MarR family AMD11_RS07835 PF02321 Outer membrane efflux protein AMD11_RS07840 PF00529 HlyD family secretion protein AMD11_RS07840 PF16576 AMD11_RS07840 AMD11_RS07845 PF07690 Major Facilitator Superfamily AMD11_RS07855 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS07855 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS07855 PF14310 Fibronectin type III-like domain AMD11_RS07860 PF00246 Zinc carboxypeptidase AMD11_RS07865 PF00854 POT family AMD11_RS07870 PF01694 Rhomboid family AMD11_RS07880 PF14542 GCN5-related N-acetyl-transferase AMD11_RS07885 PF13739 Domain of unknown function (DUF4163) AMD11_RS07890 PF01047 MarR family AMD11_RS07895 PF01432 Peptidase family M3 AMD11_RS07900 PF00255 Glutathione peroxidase AMD11_RS07905 PF00175 Oxidoreductase NAD-binding domain AMD11_RS07905 PF00970 Oxidoreductase FAD-binding domain AMD11_RS07910 PF00005 ABC transporter AMD11_RS07915 PF05681 AMD11_RS07915 AMD11_RS07915 PF05683 Fumarase C-terminus AMD11_RS07920 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS07920 PF14497 Glutathione S-transferase, C-terminal domain AMD11_RS07925 PF00484 Carbonic anhydrase AMD11_RS07930 PF02253 Phospholipase A1 AMD11_RS07935 PF04306 AMD11_RS07935 AMD11_RS07940 PF00313 'Cold-shock' DNA-binding domain AMD11_RS07945 PF05433 AMD11_RS07945 AMD11_RS07950 PF01322 Cytochrome C' AMD11_RS07955 PF00899 ThiF family AMD11_RS07960 PF01026 TatD related DNase AMD11_RS07970 PF05433 AMD11_RS07970 AMD11_RS07975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS07975 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS07975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS07980 PF01841 Transglutaminase-like superfamily AMD11_RS07980 PF12969 Domain of Unknown Function with PDB structure (DUF3857) AMD11_RS07985 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS07985 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS07995 PF00733 Asparagine synthase AMD11_RS07995 PF13537 Glutamine amidotransferase domain AMD11_RS08000 PF03358 NADPH-dependent FMN reductase AMD11_RS08005 PF00772 DnaB-like helicase N terminal domain AMD11_RS08005 PF03796 DnaB-like helicase C terminal domain AMD11_RS08010 PF00875 DNA photolyase AMD11_RS08010 PF03441 FAD binding domain of DNA photolyase AMD11_RS08015 PF00691 OmpA family AMD11_RS08015 PF13488 AMD11_RS08015 AMD11_RS08020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS08020 PF03466 LysR substrate binding domain AMD11_RS08030 PF00106 short chain dehydrogenase AMD11_RS08035 PF16576 AMD11_RS08035 AMD11_RS08040 PF00873 AcrB/AcrD/AcrF family AMD11_RS08045 PF00106 short chain dehydrogenase AMD11_RS08050 PF02321 Outer membrane efflux protein AMD11_RS08055 PF00990 GGDEF domain AMD11_RS08065 PF00990 GGDEF domain AMD11_RS08065 PF05227 CHASE3 domain AMD11_RS08065 PF13185 GAF domain AMD11_RS08080 PF01381 Helix-turn-helix AMD11_RS08085 PF06114 Domain of unknown function (DUF955) AMD11_RS08095 PF00816 H-NS histone family AMD11_RS08105 PF00589 Phage integrase family AMD11_RS08120 PF01381 Helix-turn-helix AMD11_RS08130 PF01527 Transposase AMD11_RS08135 PF00665 Integrase core domain AMD11_RS08140 PF03389 MobA/MobL family AMD11_RS08145 PF13910 AMD11_RS08145 AMD11_RS08165 PF00082 Subtilase family AMD11_RS08170 PF01668 SmpB protein AMD11_RS08175 PF03364 Polyketide cyclase / dehydrase and lipid transport AMD11_RS08180 PF03658 RnfH family Ubiquitin AMD11_RS08185 PF04355 SmpA / OmlA family AMD11_RS08190 PF01475 Ferric uptake regulator family AMD11_RS08195 PF02463 RecF/RecN/SMC N terminal domain AMD11_RS08200 PF01628 HrcA protein C terminal domain AMD11_RS08200 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMD11_RS08205 PF01025 GrpE AMD11_RS08210 PF00012 Hsp70 protein AMD11_RS08215 PF00226 DnaJ domain AMD11_RS08215 PF00684 DnaJ central domain AMD11_RS08215 PF01556 DnaJ C terminal domain AMD11_RS08220 PF08543 Phosphomethylpyrimidine kinase AMD11_RS08225 PF01842 ACT domain AMD11_RS08225 PF02153 Prephenate dehydrogenase AMD11_RS08235 PF02321 Outer membrane efflux protein AMD11_RS08240 PF16576 AMD11_RS08240 AMD11_RS08250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS08250 PF03466 LysR substrate binding domain AMD11_RS08255 PF00005 ABC transporter AMD11_RS08255 PF00664 ABC transporter transmembrane region AMD11_RS08260 PF01205 Uncharacterized protein family UPF0029 AMD11_RS08260 PF09186 Domain of unknown function (DUF1949) AMD11_RS08265 PF03641 Possible lysine decarboxylase AMD11_RS08270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD11_RS08270 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS08275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD11_RS08275 PF00364 Biotin-requiring enzyme AMD11_RS08275 PF02817 e3 binding domain AMD11_RS08280 PF00676 Dehydrogenase E1 component AMD11_RS08280 PF02779 Transketolase, pyrimidine binding domain AMD11_RS08280 PF16078 AMD11_RS08280 AMD11_RS08280 PF16870 AMD11_RS08280 AMD11_RS08285 PF13673 Acetyltransferase (GNAT) domain AMD11_RS08290 PF08007 Cupin superfamily protein AMD11_RS08295 PF11259 AMD11_RS08295 AMD11_RS08300 PF00206 Lyase AMD11_RS08300 PF08328 Adenylosuccinate lyase C-terminal AMD11_RS08305 PF00188 Cysteine-rich secretory protein family AMD11_RS08310 PF00571 CBS domain AMD11_RS08310 PF01595 AMD11_RS08310 AMD11_RS08310 PF03471 Transporter associated domain AMD11_RS08315 PF00206 Lyase AMD11_RS08315 PF10415 Fumarase C C-terminus AMD11_RS08325 PF11101 AMD11_RS08325 AMD11_RS08340 PF00005 ABC transporter AMD11_RS08345 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS08350 PF00255 Glutathione peroxidase AMD11_RS08355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS08355 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD11_RS08360 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD11_RS08360 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD11_RS08360 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD11_RS08365 PF04102 SlyX AMD11_RS08370 PF09831 AMD11_RS08370 AMD11_RS08375 PF13557 AMD11_RS08375 AMD11_RS08380 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS08380 PF13377 Periplasmic binding protein-like domain AMD11_RS08385 PF07690 Major Facilitator Superfamily AMD11_RS08390 PF00294 pfkB family carbohydrate kinase AMD11_RS08395 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AMD11_RS08400 PF00809 Pterin binding enzyme AMD11_RS08400 PF02310 B12 binding domain AMD11_RS08400 PF02607 B12 binding domain AMD11_RS08400 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMD11_RS08405 PF02574 Homocysteine S-methyltransferase AMD11_RS08410 PF01022 Bacterial regulatory protein, arsR family AMD11_RS08410 PF08241 Methyltransferase domain AMD11_RS08415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS08415 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS08415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS08420 PF13472 GDSL-like Lipase/Acylhydrolase family AMD11_RS08430 PF00575 S1 RNA binding domain AMD11_RS08430 PF00773 RNB domain AMD11_RS08430 PF08206 Ribonuclease B OB domain AMD11_RS08435 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD11_RS08440 PF00588 SpoU rRNA Methylase family AMD11_RS08440 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD11_RS08445 PF00990 GGDEF domain AMD11_RS08445 PF07494 Two component regulator propeller AMD11_RS08445 PF07495 Y_Y_Y domain AMD11_RS08450 PF00929 Exonuclease AMD11_RS08455 PF11776 Domain of unknown function (DUF3315) AMD11_RS08460 PF01895 PhoU domain AMD11_RS08465 PF00005 ABC transporter AMD11_RS08470 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS08475 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS08480 PF12849 PBP superfamily domain AMD11_RS08485 PF12849 PBP superfamily domain AMD11_RS08490 PF07396 Phosphate-selective porin O and P AMD11_RS08500 PF00484 Carbonic anhydrase AMD11_RS08505 PF00916 AMD11_RS08505 AMD11_RS08510 PF00633 Helix-hairpin-helix motif AMD11_RS08510 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD11_RS08520 PF00378 Enoyl-CoA hydratase/isomerase family AMD11_RS08525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS08525 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD11_RS08530 PF00293 NUDIX domain AMD11_RS08530 PF06945 AMD11_RS08530 AMD11_RS08535 PF00581 Rhodanese-like domain AMD11_RS08540 PF07920 Protein of unknown function (DUF1684) AMD11_RS08545 PF01510 N-acetylmuramoyl-L-alanine amidase AMD11_RS08550 PF03473 MOSC domain AMD11_RS08555 PF05728 Uncharacterised protein family (UPF0227) AMD11_RS08560 PF00583 Acetyltransferase (GNAT) family AMD11_RS08565 PF00005 ABC transporter AMD11_RS08570 PF01170 Putative RNA methylase family UPF0020 AMD11_RS08570 PF02926 THUMP domain AMD11_RS08570 PF10672 S-adenosylmethionine-dependent methyltransferase AMD11_RS08575 PF01513 ATP-NAD kinase AMD11_RS08580 PF06189 AMD11_RS08580 AMD11_RS08585 PF11159 AMD11_RS08585 AMD11_RS08595 PF09365 AMD11_RS08595 AMD11_RS08600 PF00929 Exonuclease AMD11_RS08600 PF08411 Exonuclease C-terminal AMD11_RS08605 PF01494 FAD binding domain AMD11_RS08610 PF00266 Aminotransferase class-V AMD11_RS08615 PF12805 AMD11_RS08615 AMD11_RS08615 PF13515 AMD11_RS08615 AMD11_RS08620 PF06052 3-hydroxyanthranilic acid dioxygenase AMD11_RS08625 PF00484 Carbonic anhydrase AMD11_RS08630 PF05838 Glycosyl hydrolase 108 AMD11_RS08630 PF09374 Predicted Peptidoglycan domain AMD11_RS08635 PF11655 AMD11_RS08635 AMD11_RS08640 PF11655 AMD11_RS08640 AMD11_RS08670 PF00072 Response regulator receiver domain AMD11_RS08670 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS08675 PF00161 Ribosome inactivating protein AMD11_RS08685 PF04299 Putative FMN-binding domain AMD11_RS08705 PF00152 tRNA synthetases class II (D, K and N) AMD11_RS08705 PF01336 OB-fold nucleic acid binding domain AMD11_RS08710 PF01521 Iron-sulphur cluster biosynthesis AMD11_RS08715 PF01250 Ribosomal protein S6 AMD11_RS08720 PF01084 Ribosomal protein S18 AMD11_RS08725 PF01281 Ribosomal protein L9, N-terminal domain AMD11_RS08725 PF03948 Ribosomal protein L9, C-terminal domain AMD11_RS08730 PF02463 RecF/RecN/SMC N terminal domain AMD11_RS08735 PF04354 ZipA, C-terminal FtsZ-binding domain AMD11_RS08745 PF00155 Aminotransferase class I and II AMD11_RS08750 PF00533 BRCA1 C Terminus (BRCT) domain AMD11_RS08750 PF01653 NAD-dependent DNA ligase adenylation domain AMD11_RS08750 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMD11_RS08750 PF03120 NAD-dependent DNA ligase OB-fold domain AMD11_RS08750 PF12826 Helix-hairpin-helix motif AMD11_RS08755 PF00152 tRNA synthetases class II (D, K and N) AMD11_RS08760 PF11218 AMD11_RS08760 AMD11_RS08765 PF01008 Initiation factor 2 subunit family AMD11_RS08770 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD11_RS08770 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD11_RS08785 PF01175 Urocanase AMD11_RS08790 PF05013 N-formylglutamate amidohydrolase AMD11_RS08795 PF00221 Aromatic amino acid lyase AMD11_RS08800 PF07969 Amidohydrolase family AMD11_RS08805 PF01979 Amidohydrolase family AMD11_RS08815 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS08815 PF07702 UTRA domain AMD11_RS08820 PF04471 Restriction endonuclease AMD11_RS08830 PF05597 AMD11_RS08830 AMD11_RS08835 PF09650 AMD11_RS08835 AMD11_RS08840 PF16697 AMD11_RS08840 AMD11_RS08845 PF01794 AMD11_RS08845 AMD11_RS08850 PF00174 Oxidoreductase molybdopterin binding domain AMD11_RS08855 PF00266 Aminotransferase class-V AMD11_RS08860 PF00800 Prephenate dehydratase AMD11_RS08860 PF01817 Chorismate mutase type II AMD11_RS08860 PF01842 ACT domain AMD11_RS08865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD11_RS08870 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS08875 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS08880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD11_RS08880 PF02403 Seryl-tRNA synthetase N-terminal domain AMD11_RS08885 PF02525 Flavodoxin-like fold AMD11_RS08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS08890 PF03466 LysR substrate binding domain AMD11_RS08900 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD11_RS08920 PF01527 Transposase AMD11_RS08925 PF00665 Integrase core domain AMD11_RS08925 PF13276 AMD11_RS08925 AMD11_RS08930 PF02399 AMD11_RS08930 AMD11_RS08935 PF00589 Phage integrase family AMD11_RS08935 PF13356 Domain of unknown function (DUF4102) AMD11_RS08940 PF04343 AMD11_RS08940 AMD11_RS08945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS08945 PF00672 HAMP domain AMD11_RS08945 PF12729 AMD11_RS08945 AMD11_RS08950 PF01494 FAD binding domain AMD11_RS08955 PF01047 MarR family AMD11_RS08970 PF00072 Response regulator receiver domain AMD11_RS08970 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS08970 PF00989 PAS fold AMD11_RS08970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS08970 PF08447 PAS fold AMD11_RS08970 PF08448 PAS fold AMD11_RS08975 PF00072 Response regulator receiver domain AMD11_RS08980 PF06745 KaiC AMD11_RS08985 PF00072 Response regulator receiver domain AMD11_RS08985 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS08985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS08985 PF08448 PAS fold AMD11_RS08995 PF03918 Cytochrome C biogenesis protein AMD11_RS09000 PF00578 AhpC/TSA family AMD11_RS09005 PF01578 AMD11_RS09005 AMD11_RS09005 PF16327 AMD11_RS09005 AMD11_RS09010 PF03100 CcmE AMD11_RS09015 PF04995 AMD11_RS09015 AMD11_RS09020 PF01578 AMD11_RS09020 AMD11_RS09025 PF00082 Subtilase family AMD11_RS09030 PF13490 Putative zinc-finger AMD11_RS09035 PF04542 Sigma-70 region 2 AMD11_RS09035 PF08281 Sigma-70, region 4 AMD11_RS09050 PF00034 Cytochrome c AMD11_RS09060 PF01292 Prokaryotic cytochrome b561 AMD11_RS09065 PF05523 WxcM-like, C-terminal AMD11_RS09070 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS09080 PF13480 Acetyltransferase (GNAT) domain AMD11_RS09085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD11_RS09090 PF13440 AMD11_RS09090 AMD11_RS09095 PF00535 Glycosyl transferase family 2 AMD11_RS09105 PF02706 Chain length determinant protein AMD11_RS09110 PF13649 Methyltransferase domain AMD11_RS09115 PF01979 Amidohydrolase family AMD11_RS09120 PF08241 Methyltransferase domain AMD11_RS09125 PF00534 Glycosyl transferases group 1 AMD11_RS09125 PF13439 Glycosyltransferase Family 4 AMD11_RS09130 PF00534 Glycosyl transferases group 1 AMD11_RS09130 PF13579 Glycosyl transferase 4-like domain AMD11_RS09135 PF14907 Uncharacterised nucleotidyltransferase AMD11_RS09140 PF04055 Radical SAM superfamily AMD11_RS09155 PF00083 Sugar (and other) transporter AMD11_RS09160 PF00296 Luciferase-like monooxygenase AMD11_RS09165 PF16242 AMD11_RS09165 AMD11_RS09170 PF06055 AMD11_RS09170 AMD11_RS09175 PF00571 CBS domain AMD11_RS09175 PF01595 AMD11_RS09175 AMD11_RS09175 PF03471 Transporter associated domain AMD11_RS09180 PF01865 Protein of unknown function DUF47 AMD11_RS09185 PF01384 AMD11_RS09185 AMD11_RS09190 PF02698 DUF218 domain AMD11_RS09195 PF00450 Serine carboxypeptidase AMD11_RS09200 PF00204 DNA gyrase B AMD11_RS09200 PF00986 DNA gyrase B subunit, carboxyl terminus AMD11_RS09200 PF01751 Toprim domain AMD11_RS09200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS09210 PF00117 Glutamine amidotransferase class-I AMD11_RS09210 PF06418 CTP synthase N-terminus AMD11_RS09215 PF00793 DAHP synthetase I family AMD11_RS09225 PF00113 Enolase, C-terminal TIM barrel domain AMD11_RS09225 PF03952 Enolase, N-terminal domain AMD11_RS09230 PF04977 Septum formation initiator AMD11_RS09235 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMD11_RS09240 PF02542 YgbB family AMD11_RS09245 PF01142 tRNA pseudouridine synthase D (TruD) AMD11_RS09250 PF01713 Smr domain AMD11_RS09255 PF01975 Survival protein SurE AMD11_RS09260 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMD11_RS09270 PF01476 LysM domain AMD11_RS09270 PF01551 Peptidase family M23 AMD11_RS09275 PF04430 Protein of unknown function (DUF498/DUF598) AMD11_RS09280 PF01985 CRS1 / YhbY (CRM) domain AMD11_RS09285 PF01728 FtsJ-like methyltransferase AMD11_RS09290 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS09290 PF01434 Peptidase family M41 AMD11_RS09290 PF06480 FtsH Extracellular AMD11_RS09295 PF00809 Pterin binding enzyme AMD11_RS09300 PF01715 IPP transferase AMD11_RS09310 PF01926 50S ribosome-binding GTPase AMD11_RS09310 PF13167 AMD11_RS09310 AMD11_RS09310 PF16360 AMD11_RS09310 AMD11_RS09315 PF02464 Competence-damaged protein AMD11_RS09320 PF03109 AMD11_RS09320 AMD11_RS09325 PF00717 Peptidase S24-like AMD11_RS09325 PF01726 LexA DNA binding domain AMD11_RS09330 PF00154 recA bacterial DNA recombination protein AMD11_RS09335 PF02631 RecX family AMD11_RS09340 PF01411 tRNA synthetases class II (A) AMD11_RS09340 PF02272 DHHA1 domain AMD11_RS09340 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD11_RS09345 PF02599 Global regulator protein family AMD11_RS09355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS09355 PF08447 PAS fold AMD11_RS09355 PF08448 PAS fold AMD11_RS09360 PF02678 Pirin AMD11_RS09370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS09370 PF03466 LysR substrate binding domain AMD11_RS09375 PF00581 Rhodanese-like domain AMD11_RS09375 PF09335 AMD11_RS09375 AMD11_RS09390 PF12146 Putative lysophospholipase AMD11_RS09395 PF08543 Phosphomethylpyrimidine kinase AMD11_RS09400 PF06912 AMD11_RS09400 AMD11_RS09410 PF02562 PhoH-like protein AMD11_RS09410 PF13638 PIN domain AMD11_RS09415 PF00578 AhpC/TSA family AMD11_RS09420 PF06877 Regulator of ribonuclease activity B AMD11_RS09425 PF13740 ACT domain AMD11_RS09430 PF00701 Dihydrodipicolinate synthetase family AMD11_RS09440 PF00037 4Fe-4S binding domain AMD11_RS09440 PF11953 Domain of unknown function (DUF3470) AMD11_RS09445 PF05035 2-keto-3-deoxy-galactonokinase AMD11_RS09450 PF08450 SMP-30/Gluconolaconase/LRE-like region AMD11_RS09455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD11_RS09455 PF13378 Enolase C-terminal domain-like AMD11_RS09460 PF01081 KDPG and KHG aldolase AMD11_RS09470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS09470 PF03466 LysR substrate binding domain AMD11_RS09475 PF00593 TonB dependent receptor AMD11_RS09475 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS09480 PF00593 TonB dependent receptor AMD11_RS09480 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS09490 PF03629 Domain of unknown function (DUF303) AMD11_RS09490 PF13364 Beta-galactosidase jelly roll domain AMD11_RS09495 PF02449 Beta-galactosidase AMD11_RS09500 PF01055 Glycosyl hydrolases family 31 AMD11_RS09500 PF07691 PA14 domain AMD11_RS09500 PF16338 AMD11_RS09500 AMD11_RS09500 PF17137 AMD11_RS09500 AMD11_RS09505 PF14498 Glycosyl hydrolase family 65, N-terminal domain AMD11_RS09510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD11_RS09510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD11_RS09520 PF00083 Sugar (and other) transporter AMD11_RS09525 PF05231 AMD11_RS09525 AMD11_RS09530 PF01520 N-acetylmuramoyl-L-alanine amidase AMD11_RS09530 PF11741 AMIN domain AMD11_RS09535 PF02649 Type I GTP cyclohydrolase folE2 AMD11_RS09545 PF01743 Poly A polymerase head domain AMD11_RS09545 PF12626 Polymerase A arginine-rich C-terminus AMD11_RS09545 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD11_RS09550 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD11_RS09555 PF02548 Ketopantoate hydroxymethyltransferase AMD11_RS09560 PF02569 Pantoate-beta-alanine ligase AMD11_RS09565 PF02261 Aspartate decarboxylase AMD11_RS09570 PF00342 Phosphoglucose isomerase AMD11_RS09575 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AMD11_RS09585 PF05787 Bacterial protein of unknown function (DUF839) AMD11_RS09590 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS09590 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS09595 PF00474 Sodium:solute symporter family AMD11_RS09600 PF00563 EAL domain AMD11_RS09600 PF00990 GGDEF domain AMD11_RS09600 PF01590 GAF domain AMD11_RS09605 PF00150 Cellulase (glycosyl hydrolase family 5) AMD11_RS09610 PF00072 Response regulator receiver domain AMD11_RS09610 PF02954 Bacterial regulatory protein, Fis family AMD11_RS09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS09620 PF04551 GcpE protein AMD11_RS09625 PF01569 PAP2 superfamily AMD11_RS09630 PF07690 Major Facilitator Superfamily AMD11_RS09635 PF01177 Asp/Glu/Hydantoin racemase AMD11_RS09640 PF00892 EamA-like transporter family AMD11_RS09645 PF01565 FAD binding domain AMD11_RS09645 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMD11_RS09650 PF01180 Dihydroorotate dehydrogenase AMD11_RS09655 PF08241 Methyltransferase domain AMD11_RS09660 PF13828 AMD11_RS09660 AMD11_RS09665 PF00171 Aldehyde dehydrogenase family AMD11_RS09675 PF13994 AMD11_RS09675 AMD11_RS09680 PF13641 Glycosyltransferase like family 2 AMD11_RS09685 PF01522 Polysaccharide deacetylase AMD11_RS09685 PF14883 Hypothetical glycosyl hydrolase family 13 AMD11_RS09690 PF13432 Tetratricopeptide repeat AMD11_RS09690 PF14559 Tetratricopeptide repeat AMD11_RS09695 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD11_RS09695 PF08479 POTRA domain, ShlB-type AMD11_RS09700 PF05594 AMD11_RS09700 AMD11_RS09700 PF05860 haemagglutination activity domain AMD11_RS09700 PF13332 AMD11_RS09700 AMD11_RS09705 PF05594 AMD11_RS09705 AMD11_RS09705 PF13332 AMD11_RS09705 AMD11_RS09710 PF05594 AMD11_RS09710 AMD11_RS09715 PF03073 TspO/MBR family AMD11_RS09720 PF00696 Amino acid kinase family AMD11_RS09720 PF00742 Homoserine dehydrogenase AMD11_RS09720 PF03447 Homoserine dehydrogenase, NAD binding domain AMD11_RS09720 PF13840 ACT domain AMD11_RS09725 PF00288 GHMP kinases N terminal domain AMD11_RS09725 PF08544 GHMP kinases C terminal AMD11_RS09730 PF07110 EthD domain AMD11_RS09735 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS09735 PF14821 Threonine synthase N terminus AMD11_RS09740 PF13645 AMD11_RS09740 AMD11_RS09745 PF00027 Cyclic nucleotide-binding domain AMD11_RS09745 PF13545 Crp-like helix-turn-helix domain AMD11_RS09750 PF03129 Anticodon binding domain AMD11_RS09750 PF13393 Histidyl-tRNA synthetase AMD11_RS09755 PF01371 Trp repressor protein AMD11_RS09760 PF01634 ATP phosphoribosyltransferase AMD11_RS09760 PF08029 HisG, C-terminal domain AMD11_RS09765 PF00815 Histidinol dehydrogenase AMD11_RS09770 PF00155 Aminotransferase class I and II AMD11_RS09775 PF00475 Imidazoleglycerol-phosphate dehydratase AMD11_RS09775 PF13242 HAD-hyrolase-like AMD11_RS09780 PF00117 Glutamine amidotransferase class-I AMD11_RS09785 PF00977 Histidine biosynthesis protein AMD11_RS09790 PF00977 Histidine biosynthesis protein AMD11_RS09795 PF01502 Phosphoribosyl-AMP cyclohydrolase AMD11_RS09795 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMD11_RS09800 PF00149 Calcineurin-like phosphoesterase AMD11_RS09800 PF16370 AMD11_RS09800 AMD11_RS09800 PF16371 AMD11_RS09800 AMD11_RS09805 PF01650 Peptidase C13 family AMD11_RS09815 PF03079 ARD/ARD' family AMD11_RS09820 PF00596 Class II Aldolase and Adducin N-terminal domain AMD11_RS09825 PF13520 Amino acid permease AMD11_RS09830 PF13520 Amino acid permease AMD11_RS09835 PF00293 NUDIX domain AMD11_RS09840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD11_RS09840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD11_RS09845 PF01565 FAD binding domain AMD11_RS09845 PF02913 FAD linked oxidases, C-terminal domain AMD11_RS09850 PF09498 AMD11_RS09850 AMD11_RS09855 PF13387 AMD11_RS09855 AMD11_RS09865 PF01132 Elongation factor P (EF-P) OB domain AMD11_RS09865 PF08207 Elongation factor P (EF-P) KOW-like domain AMD11_RS09865 PF09285 Elongation factor P, C-terminal AMD11_RS09870 PF00106 short chain dehydrogenase AMD11_RS09875 PF00682 HMGL-like AMD11_RS09880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS09885 PF00378 Enoyl-CoA hydratase/isomerase family AMD11_RS09890 PF04023 FeoA domain AMD11_RS09895 PF02421 Ferrous iron transport protein B AMD11_RS09895 PF07664 AMD11_RS09895 AMD11_RS09895 PF07670 Nucleoside recognition AMD11_RS09910 PF00155 Aminotransferase class I and II AMD11_RS09915 PF03473 MOSC domain AMD11_RS09915 PF03475 3-alpha domain AMD11_RS09920 PF01113 Dihydrodipicolinate reductase, N-terminus AMD11_RS09920 PF05173 Dihydrodipicolinate reductase, C-terminus AMD11_RS09925 PF00117 Glutamine amidotransferase class-I AMD11_RS09925 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD11_RS09935 PF02142 MGS-like domain AMD11_RS09935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD11_RS09935 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD11_RS09940 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD11_RS09940 PF03449 Transcription elongation factor, N-terminal AMD11_RS09950 PF01368 DHH family AMD11_RS09950 PF02272 DHHA1 domain AMD11_RS09955 PF05593 AMD11_RS09955 AMD11_RS09965 PF15649 AMD11_RS09965 AMD11_RS09980 PF13683 AMD11_RS09980 AMD11_RS09990 PF01757 AMD11_RS09990 AMD11_RS09995 PF04397 LytTr DNA-binding domain AMD11_RS10000 PF00472 RF-1 domain AMD11_RS10000 PF03462 PCRF domain AMD11_RS10005 PF00152 tRNA synthetases class II (D, K and N) AMD11_RS10005 PF01336 OB-fold nucleic acid binding domain AMD11_RS10010 PF00072 Response regulator receiver domain AMD11_RS10010 PF01966 HD domain AMD11_RS10015 PF00072 Response regulator receiver domain AMD11_RS10015 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS10015 PF01627 Hpt domain AMD11_RS10015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10020 PF00378 Enoyl-CoA hydratase/isomerase family AMD11_RS10025 PF00501 AMP-binding enzyme AMD11_RS10025 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS10035 PF00330 Aconitase family (aconitate hydratase) AMD11_RS10035 PF00694 Aconitase C-terminal domain AMD11_RS10040 PF04014 Antidote-toxin recognition MazE AMD11_RS10045 PF01850 PIN domain AMD11_RS10050 PF00330 Aconitase family (aconitate hydratase) AMD11_RS10050 PF06434 Aconitate hydratase 2 N-terminus AMD11_RS10050 PF11791 Aconitate B N-terminal domain AMD11_RS10055 PF00561 alpha/beta hydrolase fold AMD11_RS10060 PF00563 EAL domain AMD11_RS10060 PF00990 GGDEF domain AMD11_RS10060 PF13185 GAF domain AMD11_RS10060 PF13426 PAS domain AMD11_RS10065 PF00072 Response regulator receiver domain AMD11_RS10065 PF01339 CheB methylesterase AMD11_RS10070 PF03975 CheD chemotactic sensory transduction AMD11_RS10075 PF01739 CheR methyltransferase, SAM binding domain AMD11_RS10075 PF03705 CheR methyltransferase, all-alpha domain AMD11_RS10080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10080 PF00672 HAMP domain AMD11_RS10080 PF12729 AMD11_RS10080 AMD11_RS10085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10085 PF00672 HAMP domain AMD11_RS10090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10090 PF00672 HAMP domain AMD11_RS10090 PF12729 AMD11_RS10090 AMD11_RS10100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10100 PF00672 HAMP domain AMD11_RS10100 PF05227 CHASE3 domain AMD11_RS10105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10105 PF00672 HAMP domain AMD11_RS10105 PF12729 AMD11_RS10105 AMD11_RS10110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10110 PF00672 HAMP domain AMD11_RS10110 PF12729 AMD11_RS10110 AMD11_RS10115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10120 PF13557 AMD11_RS10120 AMD11_RS10130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10130 PF00672 HAMP domain AMD11_RS10130 PF02743 Cache domain AMD11_RS10135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10135 PF00672 HAMP domain AMD11_RS10135 PF17200 AMD11_RS10135 AMD11_RS10145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10145 PF00672 HAMP domain AMD11_RS10145 PF12729 AMD11_RS10145 AMD11_RS10150 PF01584 CheW-like domain AMD11_RS10150 PF01627 Hpt domain AMD11_RS10150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10150 PF02895 Signal transducing histidine kinase, homodimeric domain AMD11_RS10155 PF00072 Response regulator receiver domain AMD11_RS10160 PF13466 STAS domain AMD11_RS10165 PF01584 CheW-like domain AMD11_RS10170 PF13614 AAA domain AMD11_RS10175 PF00691 OmpA family AMD11_RS10175 PF13677 AMD11_RS10175 AMD11_RS10180 PF01618 AMD11_RS10180 AMD11_RS10190 PF00593 TonB dependent receptor AMD11_RS10190 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS10195 PF00069 Protein kinase domain AMD11_RS10210 PF08845 AMD11_RS10210 AMD11_RS10220 PF01609 Transposase DDE domain AMD11_RS10230 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMD11_RS10235 PF13333 AMD11_RS10235 AMD11_RS10245 PF01527 Transposase AMD11_RS10250 PF13683 AMD11_RS10250 AMD11_RS10255 PF01381 Helix-turn-helix AMD11_RS10265 PF04055 Radical SAM superfamily AMD11_RS10265 PF13353 4Fe-4S single cluster domain AMD11_RS10275 PF01609 Transposase DDE domain AMD11_RS10280 PF01584 CheW-like domain AMD11_RS10280 PF01627 Hpt domain AMD11_RS10280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10280 PF02895 Signal transducing histidine kinase, homodimeric domain AMD11_RS10285 PF04344 Chemotaxis phosphatase, CheZ AMD11_RS10290 PF00072 Response regulator receiver domain AMD11_RS10295 PF04539 Sigma-70 region 3 AMD11_RS10295 PF04542 Sigma-70 region 2 AMD11_RS10295 PF04545 Sigma-70, region 4 AMD11_RS10300 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD11_RS10305 PF00448 SRP54-type protein, GTPase domain AMD11_RS10310 PF00771 FHIPEP family AMD11_RS10315 PF01312 FlhB HrpN YscU SpaS Family AMD11_RS10320 PF00563 EAL domain AMD11_RS10320 PF00990 GGDEF domain AMD11_RS10320 PF03707 AMD11_RS10320 AMD11_RS10325 PF00990 GGDEF domain AMD11_RS10330 PF07495 Y_Y_Y domain AMD11_RS10335 PF00990 GGDEF domain AMD11_RS10335 PF07494 Two component regulator propeller AMD11_RS10335 PF07495 Y_Y_Y domain AMD11_RS10340 PF01311 AMD11_RS10340 AMD11_RS10345 PF01313 AMD11_RS10345 AMD11_RS10350 PF00813 AMD11_RS10350 AMD11_RS10355 PF04347 AMD11_RS10355 AMD11_RS10360 PF01052 Surface presentation of antigens (SPOA) AMD11_RS10365 PF01052 Surface presentation of antigens (SPOA) AMD11_RS10365 PF02154 Flagellar motor switch protein FliM AMD11_RS10370 PF03748 AMD11_RS10370 AMD11_RS10375 PF02120 Flagellar hook-length control protein FliK AMD11_RS10380 PF02050 Flagellar FliJ protein AMD11_RS10385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS10390 PF02108 AMD11_RS10390 AMD11_RS10395 PF01706 FliG C-terminal domain AMD11_RS10395 PF14841 FliG middle domain AMD11_RS10395 PF14842 FliG N-terminal domain AMD11_RS10400 PF01514 Secretory protein of YscJ/FliF family AMD11_RS10400 PF08345 AMD11_RS10400 AMD11_RS10405 PF02049 AMD11_RS10405 AMD11_RS10410 PF00535 Glycosyl transferase family 2 AMD11_RS10415 PF05050 Methyltransferase FkbM domain AMD11_RS10420 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS10425 PF00355 Rieske [2Fe-2S] domain AMD11_RS10425 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMD11_RS10430 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS10430 PF14602 Hexapeptide repeat of succinyl-transferase AMD11_RS10435 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS10440 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS10445 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD11_RS10445 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD11_RS10455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD11_RS10460 PF00158 Sigma-54 interaction domain AMD11_RS10460 PF02954 Bacterial regulatory protein, Fis family AMD11_RS10460 PF06490 AMD11_RS10460 AMD11_RS10465 PF00072 Response regulator receiver domain AMD11_RS10470 PF00309 AMD11_RS10470 AMD11_RS10470 PF04552 Sigma-54, DNA binding domain AMD11_RS10470 PF04963 Sigma-54 factor, core binding domain AMD11_RS10475 PF00072 Response regulator receiver domain AMD11_RS10475 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS10480 PF16823 AMD11_RS10480 AMD11_RS10490 PF02561 Flagellar protein FliS AMD11_RS10495 PF02465 AMD11_RS10495 AMD11_RS10495 PF07195 AMD11_RS10495 AMD11_RS10495 PF07196 Flagellin hook IN motif AMD11_RS10500 PF00669 Bacterial flagellin N-terminal helical region AMD11_RS10500 PF00700 Bacterial flagellin C-terminal helical region AMD11_RS10500 PF07196 Flagellin hook IN motif AMD11_RS10505 PF00669 Bacterial flagellin N-terminal helical region AMD11_RS10505 PF00700 Bacterial flagellin C-terminal helical region AMD11_RS10510 PF00460 Flagella basal body rod protein AMD11_RS10510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10515 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD11_RS10515 PF10135 AMD11_RS10515 AMD11_RS10520 PF02119 AMD11_RS10520 AMD11_RS10525 PF02107 AMD11_RS10525 AMD11_RS10530 PF00460 Flagella basal body rod protein AMD11_RS10530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10535 PF00460 Flagella basal body rod protein AMD11_RS10535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10540 PF00460 Flagella basal body rod protein AMD11_RS10540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10540 PF07559 Flagellar basal body protein FlaE AMD11_RS10545 PF03963 AMD11_RS10545 AMD11_RS10545 PF13860 FlgD Ig-like domain AMD11_RS10545 PF13861 FlgD Tudor-like domain AMD11_RS10550 PF00460 Flagella basal body rod protein AMD11_RS10550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD11_RS10555 PF00460 Flagella basal body rod protein AMD11_RS10560 PF00072 Response regulator receiver domain AMD11_RS10560 PF01584 CheW-like domain AMD11_RS10565 PF13144 SAF-like AMD11_RS10570 PF04316 Anti-sigma-28 factor, FlgM AMD11_RS10580 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS10580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10585 PF00072 Response regulator receiver domain AMD11_RS10585 PF00563 EAL domain AMD11_RS10585 PF00990 GGDEF domain AMD11_RS10590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10590 PF07730 Histidine kinase AMD11_RS10590 PF08448 PAS fold AMD11_RS10590 PF13426 PAS domain AMD11_RS10595 PF00563 EAL domain AMD11_RS10595 PF00990 GGDEF domain AMD11_RS10595 PF08447 PAS fold AMD11_RS10595 PF13426 PAS domain AMD11_RS10605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS10610 PF04356 Protein of unknown function (DUF489) AMD11_RS10615 PF03054 tRNA methyl transferase AMD11_RS10620 PF00293 NUDIX domain AMD11_RS10625 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMD11_RS10630 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS10630 PF02861 Clp amino terminal domain AMD11_RS10630 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS10630 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS10635 PF01176 Translation initiation factor 1A / IF-1 AMD11_RS10640 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMD11_RS10645 PF04339 AMD11_RS10645 AMD11_RS10650 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS10655 PF01580 FtsK/SpoIIIE family AMD11_RS10655 PF09397 Ftsk gamma domain AMD11_RS10655 PF13491 AMD11_RS10655 AMD11_RS10660 PF01841 Transglutaminase-like superfamily AMD11_RS10660 PF12969 Domain of Unknown Function with PDB structure (DUF3857) AMD11_RS10665 PF03548 Outer membrane lipoprotein carrier protein LolA AMD11_RS10675 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS10675 PF12002 MgsA AAA+ ATPase C terminal AMD11_RS10675 PF16193 AMD11_RS10675 AMD11_RS10680 PF02537 AMD11_RS10680 AMD11_RS10690 PF00108 Thiolase, N-terminal domain AMD11_RS10690 PF02803 Thiolase, C-terminal domain AMD11_RS10695 PF00378 Enoyl-CoA hydratase/isomerase family AMD11_RS10695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD11_RS10695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD11_RS10700 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS10705 PF00334 Nucleoside diphosphate kinase AMD11_RS10710 PF04055 Radical SAM superfamily AMD11_RS10715 PF13432 Tetratricopeptide repeat AMD11_RS10720 PF13413 Helix-turn-helix domain AMD11_RS10720 PF13464 AMD11_RS10720 AMD11_RS10725 PF09976 Tetratricopeptide repeat AMD11_RS10730 PF13360 PQQ-like domain AMD11_RS10735 PF01926 50S ribosome-binding GTPase AMD11_RS10735 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMD11_RS10740 PF00994 Probable molybdopterin binding domain AMD11_RS10740 PF03453 MoeA N-terminal region (domain I and II) AMD11_RS10740 PF03454 MoeA C-terminal region (domain IV) AMD11_RS10745 PF00581 Rhodanese-like domain AMD11_RS10745 PF00899 ThiF family AMD11_RS10750 PF00593 TonB dependent receptor AMD11_RS10750 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS10760 PF13628 AMD11_RS10760 AMD11_RS10770 PF00107 Zinc-binding dehydrogenase AMD11_RS10770 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS10770 PF13823 Alcohol dehydrogenase GroES-associated AMD11_RS10775 PF06884 AMD11_RS10775 AMD11_RS10780 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS10785 PF04193 PQ loop repeat AMD11_RS10790 PF00994 Probable molybdopterin binding domain AMD11_RS10790 PF03453 MoeA N-terminal region (domain I and II) AMD11_RS10790 PF03454 MoeA C-terminal region (domain IV) AMD11_RS10795 PF12804 MobA-like NTP transferase domain AMD11_RS10805 PF00561 alpha/beta hydrolase fold AMD11_RS10810 PF01566 AMD11_RS10810 AMD11_RS10815 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMD11_RS10815 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMD11_RS10820 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD11_RS10825 PF00929 Exonuclease AMD11_RS10830 PF00924 Mechanosensitive ion channel AMD11_RS10835 PF00391 PEP-utilising enzyme, mobile domain AMD11_RS10835 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMD11_RS10835 PF02896 PEP-utilising enzyme, TIM barrel domain AMD11_RS10840 PF03618 AMD11_RS10840 AMD11_RS10845 PF06853 AMD11_RS10845 AMD11_RS10850 PF00293 NUDIX domain AMD11_RS10855 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS10860 PF01066 CDP-alcohol phosphatidyltransferase AMD11_RS10865 PF09712 AMD11_RS10865 AMD11_RS10870 PF00561 alpha/beta hydrolase fold AMD11_RS10875 PF04024 AMD11_RS10875 AMD11_RS10885 PF01266 FAD dependent oxidoreductase AMD11_RS10895 PF00575 S1 RNA binding domain AMD11_RS10895 PF09371 Tex-like protein N-terminal domain AMD11_RS10895 PF12836 Helix-hairpin-helix motif AMD11_RS10895 PF16921 AMD11_RS10895 AMD11_RS10900 PF00072 Response regulator receiver domain AMD11_RS10900 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS10900 PF01590 GAF domain AMD11_RS10900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS10900 PF08447 PAS fold AMD11_RS10900 PF08448 PAS fold AMD11_RS10900 PF13185 GAF domain AMD11_RS10940 PF00034 Cytochrome c AMD11_RS10945 PF00034 Cytochrome c AMD11_RS10950 PF00529 HlyD family secretion protein AMD11_RS10950 PF16576 AMD11_RS10950 AMD11_RS10955 PF00873 AcrB/AcrD/AcrF family AMD11_RS10960 PF00873 AcrB/AcrD/AcrF family AMD11_RS10965 PF01081 KDPG and KHG aldolase AMD11_RS10970 PF00920 Dehydratase family AMD11_RS10975 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMD11_RS10980 PF02685 Glucokinase AMD11_RS10985 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD11_RS10985 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD11_RS10990 PF00005 ABC transporter AMD11_RS10990 PF08402 TOBE domain AMD11_RS10995 PF01571 Aminomethyltransferase folate-binding domain AMD11_RS10995 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD11_RS11000 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD11_RS11005 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD11_RS11010 PF00890 FAD binding domain AMD11_RS11010 PF02910 Fumarate reductase flavoprotein C-term AMD11_RS11020 PF13085 2Fe-2S iron-sulfur cluster binding domain AMD11_RS11020 PF13534 4Fe-4S dicluster domain AMD11_RS11025 PF03937 Flavinator of succinate dehydrogenase AMD11_RS11035 PF02687 AMD11_RS11035 AMD11_RS11035 PF12704 MacB-like periplasmic core domain AMD11_RS11040 PF00005 ABC transporter AMD11_RS11045 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS11050 PF00753 Metallo-beta-lactamase superfamily AMD11_RS11050 PF03772 AMD11_RS11050 AMD11_RS11050 PF13567 AMD11_RS11050 AMD11_RS11055 PF01618 AMD11_RS11055 AMD11_RS11060 PF02472 Biopolymer transport protein ExbD/TolR AMD11_RS11065 PF00005 ABC transporter AMD11_RS11065 PF00664 ABC transporter transmembrane region AMD11_RS11070 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMD11_RS11075 PF02348 Cytidylyltransferase AMD11_RS11080 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD11_RS11085 PF01436 NHL repeat AMD11_RS11090 PF01541 GIY-YIG catalytic domain AMD11_RS11090 PF02151 UvrB/uvrC motif AMD11_RS11090 PF08459 UvrC Helix-hairpin-helix N-terminal AMD11_RS11095 PF01066 CDP-alcohol phosphatidyltransferase AMD11_RS11115 PF00501 AMP-binding enzyme AMD11_RS11115 PF00550 Phosphopantetheine attachment site AMD11_RS11115 PF00668 Condensation domain AMD11_RS11115 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS11120 PF00501 AMP-binding enzyme AMD11_RS11120 PF00550 Phosphopantetheine attachment site AMD11_RS11120 PF00668 Condensation domain AMD11_RS11120 PF00975 Thioesterase domain AMD11_RS11120 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS11125 PF00665 Integrase core domain AMD11_RS11130 PF01527 Transposase AMD11_RS11135 PF00665 Integrase core domain AMD11_RS11135 PF13276 AMD11_RS11135 AMD11_RS11140 PF01527 Transposase AMD11_RS11145 PF00589 Phage integrase family AMD11_RS11155 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD11_RS11155 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD11_RS11155 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD11_RS11160 PF03486 HI0933-like protein AMD11_RS11165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS11175 PF00581 Rhodanese-like domain AMD11_RS11180 PF00072 Response regulator receiver domain AMD11_RS11180 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS11185 PF00575 S1 RNA binding domain AMD11_RS11185 PF10150 Ribonuclease E/G family AMD11_RS11190 PF00849 RNA pseudouridylate synthase AMD11_RS11190 PF01479 S4 domain AMD11_RS11195 PF11737 AMD11_RS11195 AMD11_RS11200 PF02535 AMD11_RS11200 AMD11_RS11205 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS11210 PF01329 Pterin 4 alpha carbinolamine dehydratase AMD11_RS11215 PF01106 NifU-like domain AMD11_RS11215 PF01521 Iron-sulphur cluster biosynthesis AMD11_RS11230 PF04940 Sensors of blue-light using FAD AMD11_RS11235 PF01596 O-methyltransferase AMD11_RS11240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS11245 PF02585 GlcNAc-PI de-N-acetylase AMD11_RS11250 PF05401 Nodulation protein S (NodS) AMD11_RS11255 PF00535 Glycosyl transferase family 2 AMD11_RS11265 PF00732 GMC oxidoreductase AMD11_RS11265 PF05199 GMC oxidoreductase AMD11_RS11270 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS11275 PF12375 AMD11_RS11275 AMD11_RS11285 PF13333 AMD11_RS11285 AMD11_RS11295 PF01527 Transposase AMD11_RS11305 PF09335 AMD11_RS11305 AMD11_RS11325 PF07995 Glucose / Sorbosone dehydrogenase AMD11_RS11335 PF00144 Beta-lactamase AMD11_RS11340 PF00072 Response regulator receiver domain AMD11_RS11340 PF04397 LytTr DNA-binding domain AMD11_RS11345 PF06580 AMD11_RS11345 AMD11_RS11360 PF00082 Subtilase family AMD11_RS11360 PF03797 Autotransporter beta-domain AMD11_RS11360 PF12951 AMD11_RS11360 AMD11_RS11365 PF16576 AMD11_RS11365 AMD11_RS11370 PF00873 AcrB/AcrD/AcrF family AMD11_RS11375 PF02321 Outer membrane efflux protein AMD11_RS11380 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS11385 PF00072 Response regulator receiver domain AMD11_RS11385 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS11390 PF12951 AMD11_RS11390 AMD11_RS11390 PF13018 AMD11_RS11390 AMD11_RS11395 PF00563 EAL domain AMD11_RS11400 PF07081 Protein of unknown function (DUF1349) AMD11_RS11405 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMD11_RS11410 PF05974 Domain of unknown function (DUF892) AMD11_RS11415 PF10685 AMD11_RS11415 AMD11_RS11420 PF00072 Response regulator receiver domain AMD11_RS11425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD11_RS11425 PF10414 Sirohaem synthase dimerisation region AMD11_RS11425 PF13241 Putative NAD(P)-binding AMD11_RS11425 PF14824 Sirohaem biosynthesis protein central AMD11_RS11440 PF05977 Transmembrane secretion effector AMD11_RS11450 PF07969 Amidohydrolase family AMD11_RS11455 PF07681 AMD11_RS11455 AMD11_RS11460 PF00857 Isochorismatase family AMD11_RS11465 PF12833 Helix-turn-helix domain AMD11_RS11470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS11470 PF07495 Y_Y_Y domain AMD11_RS11470 PF07730 Histidine kinase AMD11_RS11475 PF00072 Response regulator receiver domain AMD11_RS11475 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS11480 PF00672 HAMP domain AMD11_RS11480 PF17201 AMD11_RS11480 AMD11_RS11495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS11495 PF03466 LysR substrate binding domain AMD11_RS11500 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD11_RS11500 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD11_RS11505 PF10070 AMD11_RS11505 AMD11_RS11515 PF01527 Transposase AMD11_RS11520 PF13560 Helix-turn-helix domain AMD11_RS11525 PF05284 AMD11_RS11525 AMD11_RS11530 PF04002 RadC-like JAB domain AMD11_RS11535 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD11_RS11545 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AMD11_RS11550 PF11459 AMD11_RS11550 AMD11_RS11550 PF17194 AMD11_RS11550 AMD11_RS11555 PF00589 Phage integrase family AMD11_RS11555 PF13356 Domain of unknown function (DUF4102) AMD11_RS11555 PF14659 Phage integrase, N-terminal SAM-like domain AMD11_RS11570 PF00593 TonB dependent receptor AMD11_RS11570 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS11575 PF07916 AMD11_RS11575 AMD11_RS11580 PF01850 PIN domain AMD11_RS11585 PF04014 Antidote-toxin recognition MazE AMD11_RS11590 PF16263 AMD11_RS11590 AMD11_RS11600 PF04542 Sigma-70 region 2 AMD11_RS11600 PF08281 Sigma-70, region 4 AMD11_RS11605 PF04773 FecR protein AMD11_RS11605 PF16220 AMD11_RS11605 AMD11_RS11610 PF00593 TonB dependent receptor AMD11_RS11610 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS11620 PF10947 AMD11_RS11620 AMD11_RS11625 PF07514 Putative helicase AMD11_RS11625 PF07515 Protein of unknown function (DUF1528) AMD11_RS11630 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMD11_RS11630 PF05345 Putative Ig domain AMD11_RS11630 PF06594 AMD11_RS11630 AMD11_RS11635 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AMD11_RS11645 PF13437 HlyD family secretion protein AMD11_RS11645 PF13533 Biotin-lipoyl like AMD11_RS11650 PF00005 ABC transporter AMD11_RS11650 PF00664 ABC transporter transmembrane region AMD11_RS11655 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD11_RS11660 PF13614 AAA domain AMD11_RS11675 PF11198 AMD11_RS11675 AMD11_RS11685 PF08900 AMD11_RS11685 AMD11_RS11695 PF00436 Single-strand binding protein family AMD11_RS11700 PF01131 DNA topoisomerase AMD11_RS11700 PF01396 AMD11_RS11700 AMD11_RS11700 PF01751 Toprim domain AMD11_RS11705 PF00145 C-5 cytosine-specific DNA methylase AMD11_RS11715 PF13304 AAA domain AMD11_RS11745 PF11284 AMD11_RS11745 AMD11_RS11750 PF00589 Phage integrase family AMD11_RS11750 PF13356 Domain of unknown function (DUF4102) AMD11_RS11750 PF14659 Phage integrase, N-terminal SAM-like domain AMD11_RS11755 PF06250 AMD11_RS11755 AMD11_RS11760 PF01527 Transposase AMD11_RS11770 PF13333 AMD11_RS11770 AMD11_RS11775 PF00892 EamA-like transporter family AMD11_RS11780 PF00892 EamA-like transporter family AMD11_RS11785 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS11790 PF02525 Flavodoxin-like fold AMD11_RS11795 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS11795 PF13417 Glutathione S-transferase, N-terminal domain AMD11_RS11800 PF05544 Proline racemase AMD11_RS11805 PF03358 NADPH-dependent FMN reductase AMD11_RS11805 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AMD11_RS11810 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS11815 PF07690 Major Facilitator Superfamily AMD11_RS11820 PF12833 Helix-turn-helix domain AMD11_RS11825 PF12101 AMD11_RS11825 AMD11_RS11830 PF11679 AMD11_RS11830 AMD11_RS11860 PF00271 Helicase conserved C-terminal domain AMD11_RS11875 PF07791 AMD11_RS11875 AMD11_RS11930 PF01464 Transglycosylase SLT domain AMD11_RS11935 PF11072 AMD11_RS11935 AMD11_RS11940 PF12696 TraM recognition site of TraD and TraG AMD11_RS11945 PF14348 AMD11_RS11945 AMD11_RS11950 PF12532 AMD11_RS11950 AMD11_RS11950 PF13476 AAA domain AMD11_RS11970 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS11970 PF13361 UvrD-like helicase C-terminal domain AMD11_RS11995 PF09686 AMD11_RS11995 AMD11_RS12000 PF11660 AMD11_RS12000 AMD11_RS12005 PF11190 AMD11_RS12005 AMD11_RS12010 PF11990 AMD11_RS12010 AMD11_RS12015 PF11444 AMD11_RS12015 AMD11_RS12020 PF11920 AMD11_RS12020 AMD11_RS12035 PF11130 AMD11_RS12035 AMD11_RS12040 PF13462 Thioredoxin AMD11_RS12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS12045 PF03466 LysR substrate binding domain AMD11_RS12050 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD11_RS12050 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD11_RS12055 PF03401 Tripartite tricarboxylate transporter family receptor AMD11_RS12060 PF06684 Amino acid synthesis AMD11_RS12070 PF04002 RadC-like JAB domain AMD11_RS12075 PF07511 AMD11_RS12075 AMD11_RS12080 PF06834 AMD11_RS12080 AMD11_RS12090 PF01507 Phosphoadenosine phosphosulfate reductase family AMD11_RS12100 PF05930 Prophage CP4-57 regulatory protein (AlpA) AMD11_RS12105 PF00589 Phage integrase family AMD11_RS12105 PF13356 Domain of unknown function (DUF4102) AMD11_RS12105 PF14659 Phage integrase, N-terminal SAM-like domain AMD11_RS12110 PF00117 Glutamine amidotransferase class-I AMD11_RS12110 PF00958 GMP synthase C terminal domain AMD11_RS12110 PF02540 NAD synthase AMD11_RS12115 PF00478 IMP dehydrogenase / GMP reductase domain AMD11_RS12115 PF00571 CBS domain AMD11_RS12120 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMD11_RS12120 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMD11_RS12125 PF06844 Protein of unknown function (DUF1244) AMD11_RS12130 PF00999 Sodium/hydrogen exchanger family AMD11_RS12130 PF02254 TrkA-N domain AMD11_RS12135 PF00483 Nucleotidyl transferase AMD11_RS12140 PF02719 Polysaccharide biosynthesis protein AMD11_RS12140 PF13727 CoA-binding domain AMD11_RS12145 PF00953 Glycosyl transferase family 4 AMD11_RS12150 PF13432 Tetratricopeptide repeat AMD11_RS12155 PF06305 AMD11_RS12155 AMD11_RS12160 PF00216 Bacterial DNA-binding protein AMD11_RS12165 PF00575 S1 RNA binding domain AMD11_RS12170 PF02224 Cytidylate kinase AMD11_RS12175 PF00444 Ribosomal protein L36 AMD11_RS12185 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMD11_RS12190 PF00795 Carbon-nitrogen hydrolase AMD11_RS12195 PF13420 Acetyltransferase (GNAT) domain AMD11_RS12200 PF01963 AMD11_RS12200 AMD11_RS12205 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS12210 PF00754 F5/8 type C domain AMD11_RS12210 PF06202 Amylo-alpha-1,6-glucosidase AMD11_RS12215 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS12220 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS12225 PF13416 Bacterial extracellular solute-binding protein AMD11_RS12230 PF10091 Putative glucoamylase AMD11_RS12235 PF13620 Carboxypeptidase regulatory-like domain AMD11_RS12240 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS12240 PF13377 Periplasmic binding protein-like domain AMD11_RS12245 PF01722 BolA-like protein AMD11_RS12250 PF03795 YCII-related domain AMD11_RS12255 PF02616 ScpA/B protein AMD11_RS12260 PF04079 Putative transcriptional regulators (Ypuh-like) AMD11_RS12265 PF00849 RNA pseudouridylate synthase AMD11_RS12265 PF01479 S4 domain AMD11_RS12275 PF05096 Glutamine cyclotransferase AMD11_RS12280 PF00795 Carbon-nitrogen hydrolase AMD11_RS12285 PF00155 Aminotransferase class I and II AMD11_RS12290 PF00005 ABC transporter AMD11_RS12295 PF03379 AMD11_RS12295 AMD11_RS12300 PF01578 AMD11_RS12300 AMD11_RS12305 PF04995 AMD11_RS12305 AMD11_RS12310 PF03100 CcmE AMD11_RS12315 PF01578 AMD11_RS12315 AMD11_RS12315 PF16327 AMD11_RS12315 AMD11_RS12320 PF08534 Redoxin AMD11_RS12325 PF03918 Cytochrome C biogenesis protein AMD11_RS12330 PF13432 Tetratricopeptide repeat AMD11_RS12335 PF00561 alpha/beta hydrolase fold AMD11_RS12340 PF00313 'Cold-shock' DNA-binding domain AMD11_RS12340 PF06961 AMD11_RS12340 AMD11_RS12345 PF00005 ABC transporter AMD11_RS12345 PF00664 ABC transporter transmembrane region AMD11_RS12350 PF00005 ABC transporter AMD11_RS12350 PF00664 ABC transporter transmembrane region AMD11_RS12355 PF01654 AMD11_RS12355 AMD11_RS12360 PF02322 AMD11_RS12360 AMD11_RS12365 PF08173 AMD11_RS12365 AMD11_RS12375 PF07690 Major Facilitator Superfamily AMD11_RS12380 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD11_RS12380 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD11_RS12385 PF00171 Aldehyde dehydrogenase family AMD11_RS12390 PF00696 Amino acid kinase family AMD11_RS12390 PF01472 PUA domain AMD11_RS12395 PF03795 YCII-related domain AMD11_RS12400 PF00206 Lyase AMD11_RS12405 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD11_RS12410 PF13302 Acetyltransferase (GNAT) domain AMD11_RS12415 PF00696 Amino acid kinase family AMD11_RS12415 PF04768 Protein of unknown function (DUF619) AMD11_RS12420 PF01546 Peptidase family M20/M25/M40 AMD11_RS12420 PF07687 Peptidase dimerisation domain AMD11_RS12425 PF00583 Acetyltransferase (GNAT) family AMD11_RS12430 PF00764 Arginosuccinate synthase AMD11_RS12435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD11_RS12435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD11_RS12445 PF01406 tRNA synthetases class I (C) catalytic domain AMD11_RS12445 PF09190 DALR domain AMD11_RS12450 PF02657 Fe-S metabolism associated domain AMD11_RS12455 PF05977 Transmembrane secretion effector AMD11_RS12460 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD11_RS12470 PF01809 AMD11_RS12470 AMD11_RS12475 PF01979 Amidohydrolase family AMD11_RS12480 PF01551 Peptidase family M23 AMD11_RS12485 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS12490 PF13520 Amino acid permease AMD11_RS12495 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMD11_RS12500 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AMD11_RS12510 PF00753 Metallo-beta-lactamase superfamily AMD11_RS12515 PF16242 AMD11_RS12515 AMD11_RS12530 PF01527 Transposase AMD11_RS12535 PF00295 Glycosyl hydrolases family 28 AMD11_RS12545 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS12550 PF13489 Methyltransferase domain AMD11_RS12555 PF01979 Amidohydrolase family AMD11_RS12565 PF01132 Elongation factor P (EF-P) OB domain AMD11_RS12565 PF08207 Elongation factor P (EF-P) KOW-like domain AMD11_RS12565 PF09285 Elongation factor P, C-terminal AMD11_RS12570 PF13353 4Fe-4S single cluster domain AMD11_RS12575 PF00563 EAL domain AMD11_RS12575 PF00672 HAMP domain AMD11_RS12575 PF00990 GGDEF domain AMD11_RS12575 PF17203 AMD11_RS12575 AMD11_RS12580 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AMD11_RS12585 PF00588 SpoU rRNA Methylase family AMD11_RS12590 PF00459 Inositol monophosphatase family AMD11_RS12595 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD11_RS12595 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD11_RS12600 PF00545 ribonuclease AMD11_RS12605 PF01337 Barstar (barnase inhibitor) AMD11_RS12610 PF00005 ABC transporter AMD11_RS12610 PF12848 ABC transporter AMD11_RS12610 PF16326 AMD11_RS12610 AMD11_RS12615 PF00270 DEAD/DEAH box helicase AMD11_RS12615 PF00271 Helicase conserved C-terminal domain AMD11_RS12615 PF03880 DbpA RNA binding domain AMD11_RS12620 PF00156 Phosphoribosyl transferase domain AMD11_RS12625 PF02696 AMD11_RS12625 AMD11_RS12630 PF07859 alpha/beta hydrolase fold AMD11_RS12635 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS12635 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS12640 PF00313 'Cold-shock' DNA-binding domain AMD11_RS12645 PF07152 YaeQ protein AMD11_RS12650 PF03486 HI0933-like protein AMD11_RS12655 PF00563 EAL domain AMD11_RS12655 PF00990 GGDEF domain AMD11_RS12655 PF13188 PAS domain AMD11_RS12660 PF01435 Peptidase family M48 AMD11_RS12665 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD11_RS12670 PF00106 short chain dehydrogenase AMD11_RS12675 PF05233 AMD11_RS12675 AMD11_RS12675 PF07879 AMD11_RS12675 AMD11_RS12680 PF01963 AMD11_RS12680 AMD11_RS12685 PF07920 Protein of unknown function (DUF1684) AMD11_RS12690 PF01119 DNA mismatch repair protein, C-terminal domain AMD11_RS12690 PF08676 MutL C terminal dimerisation domain AMD11_RS12690 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS12695 PF01520 N-acetylmuramoyl-L-alanine amidase AMD11_RS12695 PF11741 AMIN domain AMD11_RS12700 PF02367 Uncharacterised P-loop hydrolase UPF0079 AMD11_RS12705 PF01256 Carbohydrate kinase AMD11_RS12705 PF03853 YjeF-related protein N-terminus AMD11_RS12710 PF08331 AMD11_RS12710 AMD11_RS12710 PF13484 AMD11_RS12710 AMD11_RS12715 PF02601 AMD11_RS12715 AMD11_RS12715 PF13742 AMD11_RS12715 AMD11_RS12720 PF06057 Bacterial virulence protein (VirJ) AMD11_RS12725 PF03781 Sulfatase-modifying factor enzyme 1 AMD11_RS12730 PF00570 HRDC domain AMD11_RS12730 PF01612 3'-5' exonuclease AMD11_RS12735 PF01068 ATP dependent DNA ligase domain AMD11_RS12735 PF04679 ATP dependent DNA ligase C terminal region AMD11_RS12735 PF13298 DNA polymerase Ligase (LigD) AMD11_RS12740 PF12244 AMD11_RS12740 AMD11_RS12745 PF00816 H-NS histone family AMD11_RS12755 PF00589 Phage integrase family AMD11_RS12780 PF01609 Transposase DDE domain AMD11_RS12780 PF05598 AMD11_RS12780 AMD11_RS12785 PF00665 Integrase core domain AMD11_RS12790 PF01527 Transposase AMD11_RS12805 PF05016 Plasmid stabilisation system protein AMD11_RS12810 PF01402 Ribbon-helix-helix protein, copG family AMD11_RS12815 PF01526 AMD11_RS12815 AMD11_RS12825 PF00665 Integrase core domain AMD11_RS12825 PF13276 AMD11_RS12825 AMD11_RS12830 PF00239 Resolvase, N terminal domain AMD11_RS12835 PF13166 AMD11_RS12835 AMD11_RS12845 PF02384 N-6 DNA Methylase AMD11_RS12850 PF09572 AMD11_RS12850 AMD11_RS12860 PF07929 Plasmid pRiA4b ORF-3-like protein AMD11_RS12875 PF04796 AMD11_RS12875 AMD11_RS12885 PF13289 AMD11_RS12885 AMD11_RS12890 PF01935 Domain of unknown function DUF87 AMD11_RS12900 PF00990 GGDEF domain AMD11_RS12905 PF01584 CheW-like domain AMD11_RS12910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS12910 PF00672 HAMP domain AMD11_RS12910 PF12729 AMD11_RS12910 AMD11_RS12915 PF02245 Methylpurine-DNA glycosylase (MPG) AMD11_RS12920 PF00270 DEAD/DEAH box helicase AMD11_RS12920 PF00271 Helicase conserved C-terminal domain AMD11_RS12920 PF08494 AMD11_RS12920 AMD11_RS12925 PF11743 AMD11_RS12925 AMD11_RS12935 PF04386 Stringent starvation protein B AMD11_RS12940 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS12940 PF13417 Glutathione S-transferase, N-terminal domain AMD11_RS12945 PF02167 Cytochrome C1 family AMD11_RS12950 PF00032 Cytochrome b(C-terminal)/b6/petD AMD11_RS12950 PF00033 Cytochrome b(N-terminal)/b6/petB AMD11_RS12955 PF00355 Rieske [2Fe-2S] domain AMD11_RS12955 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMD11_RS12960 PF01464 Transglycosylase SLT domain AMD11_RS12965 PF08279 HTH domain AMD11_RS12965 PF13280 AMD11_RS12965 AMD11_RS12970 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS12975 PF00919 Uncharacterized protein family UPF0004 AMD11_RS12975 PF01938 TRAM domain AMD11_RS12975 PF04055 Radical SAM superfamily AMD11_RS12980 PF02562 PhoH-like protein AMD11_RS12990 PF02130 Uncharacterized protein family UPF0054 AMD11_RS13000 PF00571 CBS domain AMD11_RS13000 PF03471 Transporter associated domain AMD11_RS13005 PF13387 AMD11_RS13005 AMD11_RS13010 PF01544 CorA-like Mg2+ transporter protein AMD11_RS13015 PF00171 Aldehyde dehydrogenase family AMD11_RS13025 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS13030 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS13035 PF00005 ABC transporter AMD11_RS13035 PF08402 TOBE domain AMD11_RS13040 PF02321 Outer membrane efflux protein AMD11_RS13045 PF07690 Major Facilitator Superfamily AMD11_RS13050 PF13533 Biotin-lipoyl like AMD11_RS13050 PF16576 AMD11_RS13050 AMD11_RS13055 PF13416 Bacterial extracellular solute-binding protein AMD11_RS13060 PF00202 Aminotransferase class-III AMD11_RS13065 PF00120 Glutamine synthetase, catalytic domain AMD11_RS13070 PF07722 Peptidase C26 AMD11_RS13075 PF00120 Glutamine synthetase, catalytic domain AMD11_RS13080 PF01266 FAD dependent oxidoreductase AMD11_RS13085 PF00072 Response regulator receiver domain AMD11_RS13085 PF00990 GGDEF domain AMD11_RS13090 PF01814 Hemerythrin HHE cation binding domain AMD11_RS13095 PF00083 Sugar (and other) transporter AMD11_RS13095 PF07690 Major Facilitator Superfamily AMD11_RS13105 PF00384 Molybdopterin oxidoreductase AMD11_RS13105 PF01568 Molydopterin dinucleotide binding domain AMD11_RS13110 PF02634 FdhD/NarQ family AMD11_RS13115 PF07690 Major Facilitator Superfamily AMD11_RS13120 PF00202 Aminotransferase class-III AMD11_RS13130 PF04286 AMD11_RS13130 AMD11_RS13135 PF00072 Response regulator receiver domain AMD11_RS13135 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS13135 PF01627 Hpt domain AMD11_RS13135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS13135 PF03924 CHASE domain AMD11_RS13135 PF13426 PAS domain AMD11_RS13140 PF00072 Response regulator receiver domain AMD11_RS13140 PF13487 HD domain AMD11_RS13145 PF07690 Major Facilitator Superfamily AMD11_RS13150 PF05088 AMD11_RS13150 AMD11_RS13150 PF12466 AMD11_RS13150 AMD11_RS13155 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS13160 PF16576 AMD11_RS13160 AMD11_RS13165 PF00873 AcrB/AcrD/AcrF family AMD11_RS13170 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS13170 PF13377 Periplasmic binding protein-like domain AMD11_RS13175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD11_RS13175 PF00381 PTS HPr component phosphorylation site AMD11_RS13175 PF00391 PEP-utilising enzyme, mobile domain AMD11_RS13175 PF02896 PEP-utilising enzyme, TIM barrel domain AMD11_RS13175 PF05524 PEP-utilising enzyme, N-terminal AMD11_RS13180 PF00294 pfkB family carbohydrate kinase AMD11_RS13185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD11_RS13190 PF04966 Carbohydrate-selective porin, OprB family AMD11_RS13205 PF07791 AMD11_RS13205 AMD11_RS13220 PF02355 Protein export membrane protein AMD11_RS13220 PF07549 SecD/SecF GG Motif AMD11_RS13225 PF02355 Protein export membrane protein AMD11_RS13225 PF07549 SecD/SecF GG Motif AMD11_RS13225 PF13721 SecD export protein N-terminal TM region AMD11_RS13230 PF02699 Preprotein translocase subunit AMD11_RS13235 PF01702 Queuine tRNA-ribosyltransferase AMD11_RS13240 PF02547 Queuosine biosynthesis protein AMD11_RS13245 PF01037 AsnC family AMD11_RS13245 PF13412 Winged helix-turn-helix DNA-binding AMD11_RS13255 PF00202 Aminotransferase class-III AMD11_RS13260 PF04488 Glycosyltransferase sugar-binding region containing DXD motif AMD11_RS13265 PF00149 Calcineurin-like phosphoesterase AMD11_RS13265 PF16656 AMD11_RS13265 AMD11_RS13270 PF02333 Phytase AMD11_RS13275 PF00593 TonB dependent receptor AMD11_RS13275 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS13280 PF14681 Uracil phosphoribosyltransferase AMD11_RS13285 PF00759 Glycosyl hydrolase family 9 AMD11_RS13285 PF02927 N-terminal ig-like domain of cellulase AMD11_RS13295 PF01019 Gamma-glutamyltranspeptidase AMD11_RS13300 PF00037 4Fe-4S binding domain AMD11_RS13315 PF01467 Cytidylyltransferase AMD11_RS13320 PF03602 Conserved hypothetical protein 95 AMD11_RS13325 PF00183 Hsp90 protein AMD11_RS13325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS13330 PF05593 AMD11_RS13330 AMD11_RS13330 PF14220 AMD11_RS13330 AMD11_RS13335 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) AMD11_RS13340 PF00593 TonB dependent receptor AMD11_RS13340 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS13345 PF00326 Prolyl oligopeptidase family AMD11_RS13345 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD11_RS13350 PF04616 Glycosyl hydrolases family 43 AMD11_RS13355 PF00754 F5/8 type C domain AMD11_RS13355 PF07532 AMD11_RS13355 AMD11_RS13360 PF00593 TonB dependent receptor AMD11_RS13360 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS13370 PF00082 Subtilase family AMD11_RS13370 PF09286 Pro-kumamolisin, activation domain AMD11_RS13385 PF01301 Glycosyl hydrolases family 35 AMD11_RS13390 PF00326 Prolyl oligopeptidase family AMD11_RS13390 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD11_RS13395 PF13520 Amino acid permease AMD11_RS13400 PF05960 Bacterial protein of unknown function (DUF885) AMD11_RS13405 PF05960 Bacterial protein of unknown function (DUF885) AMD11_RS13410 PF00557 Metallopeptidase family M24 AMD11_RS13410 PF01321 Creatinase/Prolidase N-terminal domain AMD11_RS13415 PF00171 Aldehyde dehydrogenase family AMD11_RS13420 PF00701 Dihydrodipicolinate synthetase family AMD11_RS13425 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS13430 PF13510 2Fe-2S iron-sulfur cluster binding domain AMD11_RS13435 PF01266 FAD dependent oxidoreductase AMD11_RS13440 PF05544 Proline racemase AMD11_RS13445 PF08448 PAS fold AMD11_RS13445 PF12833 Helix-turn-helix domain AMD11_RS13450 PF00448 SRP54-type protein, GTPase domain AMD11_RS13450 PF02881 SRP54-type protein, helical bundle domain AMD11_RS13455 PF00633 Helix-hairpin-helix motif AMD11_RS13455 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD11_RS13455 PF14815 NUDIX domain AMD11_RS13460 PF04362 Bacterial Fe(2+) trafficking AMD11_RS13465 PF00072 Response regulator receiver domain AMD11_RS13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS13465 PF13426 PAS domain AMD11_RS13475 PF10685 AMD11_RS13475 AMD11_RS13495 PF08212 Lipocalin-like domain AMD11_RS13500 PF03168 Late embryogenesis abundant protein AMD11_RS13505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS13505 PF02770 Acyl-CoA dehydrogenase, middle domain AMD11_RS13505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS13505 PF12418 AMD11_RS13505 AMD11_RS13505 PF12806 AMD11_RS13505 AMD11_RS13510 PF14279 AMD11_RS13510 AMD11_RS13515 PF02779 Transketolase, pyrimidine binding domain AMD11_RS13515 PF02780 Transketolase, C-terminal domain AMD11_RS13515 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMD11_RS13520 PF04101 Glycosyltransferase family 28 C-terminal domain AMD11_RS13530 PF13506 Glycosyl transferase family 21 AMD11_RS13535 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS13540 PF00753 Metallo-beta-lactamase superfamily AMD11_RS13545 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD11_RS13545 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD11_RS13550 PF01963 AMD11_RS13550 AMD11_RS13555 PF06172 Cupin superfamily (DUF985) AMD11_RS13560 PF03808 AMD11_RS13560 AMD11_RS13565 PF04230 AMD11_RS13565 AMD11_RS13575 PF13440 AMD11_RS13575 AMD11_RS13580 PF13692 Glycosyl transferases group 1 AMD11_RS13585 PF00534 Glycosyl transferases group 1 AMD11_RS13585 PF13439 Glycosyltransferase Family 4 AMD11_RS13590 PF01757 AMD11_RS13590 AMD11_RS13595 PF01757 AMD11_RS13595 AMD11_RS13605 PF02397 AMD11_RS13605 AMD11_RS13605 PF13727 CoA-binding domain AMD11_RS13610 PF02706 Chain length determinant protein AMD11_RS13610 PF13807 AMD11_RS13610 AMD11_RS13615 PF02563 Polysaccharide biosynthesis/export protein AMD11_RS13615 PF10531 SLBB domain AMD11_RS13625 PF13411 MerR HTH family regulatory protein AMD11_RS13630 PF00216 Bacterial DNA-binding protein AMD11_RS13635 PF01588 Putative tRNA binding domain AMD11_RS13635 PF03147 Ferredoxin-fold anticodon binding domain AMD11_RS13635 PF03483 B3/4 domain AMD11_RS13635 PF03484 tRNA synthetase B5 domain AMD11_RS13640 PF01409 tRNA synthetases class II core domain (F) AMD11_RS13640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMD11_RS13645 PF00453 Ribosomal protein L20 AMD11_RS13650 PF01632 Ribosomal protein L35 AMD11_RS13655 PF00707 Translation initiation factor IF-3, C-terminal domain AMD11_RS13655 PF05198 Translation initiation factor IF-3, N-terminal domain AMD11_RS13660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD11_RS13660 PF02824 TGS domain AMD11_RS13660 PF03129 Anticodon binding domain AMD11_RS13660 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD11_RS13665 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS13665 PF13377 Periplasmic binding protein-like domain AMD11_RS13670 PF00128 Alpha amylase, catalytic domain AMD11_RS13675 PF07690 Major Facilitator Superfamily AMD11_RS13680 PF06202 Amylo-alpha-1,6-glucosidase AMD11_RS13685 PF10566 Glycoside hydrolase 97 AMD11_RS13685 PF14508 Glycosyl-hydrolase 97 N-terminal AMD11_RS13685 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD11_RS13695 PF00593 TonB dependent receptor AMD11_RS13695 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS13700 PF00128 Alpha amylase, catalytic domain AMD11_RS13705 PF01527 Transposase AMD11_RS13710 PF13683 AMD11_RS13710 AMD11_RS13725 PF01471 Putative peptidoglycan binding domain AMD11_RS13735 PF04610 AMD11_RS13735 AMD11_RS13745 PF03135 AMD11_RS13745 AMD11_RS13750 PF05101 AMD11_RS13750 AMD11_RS13755 PF04956 AMD11_RS13755 AMD11_RS13760 PF01464 Transglycosylase SLT domain AMD11_RS13765 PF00437 Type II/IV secretion system protein AMD11_RS13770 PF03743 Bacterial conjugation TrbI-like protein AMD11_RS13775 PF03524 Conjugal transfer protein AMD11_RS13780 PF04335 VirB8 protein AMD11_RS13785 PF10671 Toxin co-regulated pilus biosynthesis protein Q AMD11_RS13790 PF02534 Type IV secretory system Conjugative DNA transfer AMD11_RS13805 PF00271 Helicase conserved C-terminal domain AMD11_RS13805 PF02151 UvrB/uvrC motif AMD11_RS13805 PF04851 Type III restriction enzyme, res subunit AMD11_RS13805 PF12344 Ultra-violet resistance protein B AMD11_RS13840 PF01527 Transposase AMD11_RS13850 PF13333 AMD11_RS13850 AMD11_RS13870 PF01555 DNA methylase AMD11_RS13875 PF04860 Phage portal protein AMD11_RS13880 PF03237 Terminase-like family AMD11_RS13880 PF06056 Putative ATPase subunit of terminase (gpP-like) AMD11_RS13885 PF05929 AMD11_RS13885 AMD11_RS13890 PF05125 AMD11_RS13890 AMD11_RS13895 PF05944 AMD11_RS13895 AMD11_RS13900 PF05926 AMD11_RS13900 AMD11_RS13905 PF05489 Phage Tail Protein X AMD11_RS13910 PF16931 AMD11_RS13910 AMD11_RS13915 PF05449 AMD11_RS13915 AMD11_RS13930 PF06891 AMD11_RS13930 AMD11_RS13935 PF05069 AMD11_RS13935 AMD11_RS13940 PF04865 AMD11_RS13940 AMD11_RS13945 PF09684 AMD11_RS13945 AMD11_RS13965 PF04717 Phage-related baseplate assembly protein AMD11_RS13975 PF01527 Transposase AMD11_RS13985 PF13633 Prokaryotic N-terminal methylation site AMD11_RS13985 PF16732 AMD11_RS13985 AMD11_RS13990 PF05567 Neisseria PilC beta-propeller domain AMD11_RS13995 PF13681 AMD11_RS13995 AMD11_RS13995 PF14341 AMD11_RS13995 AMD11_RS14000 PF13544 AMD11_RS14000 AMD11_RS14000 PF16074 AMD11_RS14000 AMD11_RS14005 PF13544 AMD11_RS14005 AMD11_RS14010 PF12019 Type II transport protein GspH AMD11_RS14010 PF13633 Prokaryotic N-terminal methylation site AMD11_RS14015 PF06580 AMD11_RS14015 AMD11_RS14020 PF03641 Possible lysine decarboxylase AMD11_RS14020 PF11892 Domain of unknown function (DUF3412) AMD11_RS14020 PF14793 Domain of unknown function (DUF4478) AMD11_RS14025 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS14025 PF13620 Carboxypeptidase regulatory-like domain AMD11_RS14030 PF01914 AMD11_RS14030 AMD11_RS14035 PF00106 short chain dehydrogenase AMD11_RS14040 PF00462 Glutaredoxin AMD11_RS14045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD11_RS14045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD11_RS14050 PF02222 ATP-grasp domain AMD11_RS14055 PF00731 AIR carboxylase AMD11_RS14060 PF03966 Trm112p-like protein AMD11_RS14065 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMD11_RS14065 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMD11_RS14070 PF10030 AMD11_RS14070 AMD11_RS14075 PF00013 KH domain AMD11_RS14075 PF00575 S1 RNA binding domain AMD11_RS14075 PF01138 3' exoribonuclease family, domain 1 AMD11_RS14075 PF03725 3' exoribonuclease family, domain 2 AMD11_RS14075 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMD11_RS14080 PF00312 Ribosomal protein S15 AMD11_RS14085 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMD11_RS14085 PF09157 Pseudouridine synthase II TruB, C-terminal AMD11_RS14085 PF16198 AMD11_RS14085 AMD11_RS14090 PF02033 Ribosome-binding factor A AMD11_RS14095 PF00009 Elongation factor Tu GTP binding domain AMD11_RS14095 PF04760 Translation initiation factor IF-2, N-terminal region AMD11_RS14095 PF08364 AMD11_RS14095 AMD11_RS14095 PF11987 Translation-initiation factor 2 AMD11_RS14100 PF00575 S1 RNA binding domain AMD11_RS14100 PF08529 NusA N-terminal domain AMD11_RS14100 PF13184 NusA-like KH domain AMD11_RS14100 PF14520 Helix-hairpin-helix domain AMD11_RS14105 PF02576 Uncharacterised BCR, YhbC family COG0779 AMD11_RS14115 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD11_RS14120 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD11_RS14125 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMD11_RS14125 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD11_RS14130 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD11_RS14135 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMD11_RS14140 PF12838 4Fe-4S dicluster domain AMD11_RS14145 PF00146 NADH dehydrogenase AMD11_RS14150 PF00384 Molybdopterin oxidoreductase AMD11_RS14150 PF01568 Molydopterin dinucleotide binding domain AMD11_RS14150 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD11_RS14150 PF13510 2Fe-2S iron-sulfur cluster binding domain AMD11_RS14155 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMD11_RS14155 PF10531 SLBB domain AMD11_RS14155 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD11_RS14160 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMD11_RS14165 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMD11_RS14170 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMD11_RS14175 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMD11_RS14180 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMD11_RS14190 PF03840 Preprotein translocase SecG subunit AMD11_RS14195 PF00121 Triosephosphate isomerase AMD11_RS14200 PF00106 short chain dehydrogenase AMD11_RS14205 PF01152 Bacterial-like globin AMD11_RS14210 PF11231 AMD11_RS14210 AMD11_RS14215 PF00563 EAL domain AMD11_RS14215 PF00672 HAMP domain AMD11_RS14215 PF00990 GGDEF domain AMD11_RS14215 PF14827 Sensory domain of two-component sensor kinase AMD11_RS14225 PF03171 2OG-Fe(II) oxygenase superfamily AMD11_RS14225 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AMD11_RS14235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD11_RS14235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD11_RS14235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD11_RS14235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD11_RS14240 PF01039 Carboxyl transferase domain AMD11_RS14245 PF00290 Tryptophan synthase alpha chain AMD11_RS14255 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS14260 PF03466 LysR substrate binding domain AMD11_RS14265 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMD11_RS14270 PF01416 tRNA pseudouridine synthase AMD11_RS14275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS14290 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD11_RS14290 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMD11_RS14295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD11_RS14295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD11_RS14300 PF01264 Chorismate synthase AMD11_RS14305 PF05175 Methyltransferase small domain AMD11_RS14310 PF02630 SCO1/SenC AMD11_RS14315 PF02666 AMD11_RS14315 AMD11_RS14320 PF01464 Transglycosylase SLT domain AMD11_RS14320 PF01476 LysM domain AMD11_RS14325 PF05872 AMD11_RS14325 AMD11_RS14330 PF00293 NUDIX domain AMD11_RS14340 PF01694 Rhomboid family AMD11_RS14345 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD11_RS14345 PF03449 Transcription elongation factor, N-terminal AMD11_RS14350 PF00919 Uncharacterized protein family UPF0004 AMD11_RS14350 PF04055 Radical SAM superfamily AMD11_RS14355 PF01738 Dienelactone hydrolase family AMD11_RS14360 PF01230 HIT domain AMD11_RS14375 PF00692 dUTPase AMD11_RS14380 PF10609 ParA/MinD ATPase like AMD11_RS14385 PF00593 TonB dependent receptor AMD11_RS14385 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS14390 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS14395 PF01593 Flavin containing amine oxidoreductase AMD11_RS14400 PF01431 Peptidase family M13 AMD11_RS14400 PF05649 Peptidase family M13 AMD11_RS14405 PF01431 Peptidase family M13 AMD11_RS14405 PF05649 Peptidase family M13 AMD11_RS14410 PF01431 Peptidase family M13 AMD11_RS14410 PF05649 Peptidase family M13 AMD11_RS14415 PF01694 Rhomboid family AMD11_RS14420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD11_RS14425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD11_RS14425 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS14430 PF01266 FAD dependent oxidoreductase AMD11_RS14435 PF04235 AMD11_RS14435 AMD11_RS14440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD11_RS14445 PF00877 NlpC/P60 family AMD11_RS14450 PF00877 NlpC/P60 family AMD11_RS14455 PF03061 Thioesterase superfamily AMD11_RS14460 PF13847 Methyltransferase domain AMD11_RS14465 PF00375 Sodium:dicarboxylate symporter family AMD11_RS14470 PF00245 Alkaline phosphatase AMD11_RS14475 PF01171 PP-loop family AMD11_RS14475 PF09179 TilS substrate binding domain AMD11_RS14475 PF11734 TilS substrate C-terminal domain AMD11_RS14480 PF02609 Exonuclease VII small subunit AMD11_RS14485 PF00348 Polyprenyl synthetase AMD11_RS14490 PF14521 Lysine-specific metallo-endopeptidase AMD11_RS14495 PF09685 AMD11_RS14495 AMD11_RS14500 PF01523 Putative modulator of DNA gyrase AMD11_RS14505 PF04751 Protein of unknown function (DUF615) AMD11_RS14510 PF01523 Putative modulator of DNA gyrase AMD11_RS14520 PF13116 AMD11_RS14520 AMD11_RS14520 PF13502 AMD11_RS14520 AMD11_RS14525 PF10150 Ribonuclease E/G family AMD11_RS14530 PF02545 Maf-like protein AMD11_RS14535 PF04402 Protein of unknown function (DUF541) AMD11_RS14540 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS14540 PF13620 Carboxypeptidase regulatory-like domain AMD11_RS14545 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS14550 PF02590 Predicted SPOUT methyltransferase AMD11_RS14555 PF05787 Bacterial protein of unknown function (DUF839) AMD11_RS14555 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMD11_RS14560 PF02410 Oligomerisation domain AMD11_RS14565 PF01467 Cytidylyltransferase AMD11_RS14570 PF06144 DNA polymerase III, delta subunit AMD11_RS14575 PF04390 Lipopolysaccharide-assembly AMD11_RS14580 PF00133 tRNA synthetases class I (I, L, M and V) AMD11_RS14580 PF08264 Anticodon-binding domain of tRNA AMD11_RS14580 PF13603 Leucyl-tRNA synthetase, Domain 2 AMD11_RS14585 PF06197 AMD11_RS14585 AMD11_RS14590 PF00085 Thioredoxin AMD11_RS14590 PF14559 Tetratricopeptide repeat AMD11_RS14590 PF14561 Tetratricopeptide repeat AMD11_RS14600 PF14539 Domain of unknown function (DUF4442) AMD11_RS14615 PF04070 AMD11_RS14615 AMD11_RS14620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD11_RS14625 PF00892 EamA-like transporter family AMD11_RS14630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS14630 PF03466 LysR substrate binding domain AMD11_RS14645 PF14257 AMD11_RS14645 AMD11_RS14655 PF05960 Bacterial protein of unknown function (DUF885) AMD11_RS14660 PF00005 ABC transporter AMD11_RS14660 PF00664 ABC transporter transmembrane region AMD11_RS14665 PF07929 Plasmid pRiA4b ORF-3-like protein AMD11_RS14670 PF00873 AcrB/AcrD/AcrF family AMD11_RS14675 PF16576 AMD11_RS14675 AMD11_RS14680 PF06629 AMD11_RS14680 AMD11_RS14685 PF02321 Outer membrane efflux protein AMD11_RS14690 PF00072 Response regulator receiver domain AMD11_RS14690 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS14695 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS14695 PF00672 HAMP domain AMD11_RS14695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS14700 PF00999 Sodium/hydrogen exchanger family AMD11_RS14705 PF00144 Beta-lactamase AMD11_RS14705 PF11954 AMD11_RS14705 AMD11_RS14710 PF03737 Demethylmenaquinone methyltransferase AMD11_RS14720 PF01904 Protein of unknown function DUF72 AMD11_RS14725 PF00892 EamA-like transporter family AMD11_RS14730 PF00990 GGDEF domain AMD11_RS14730 PF01590 GAF domain AMD11_RS14735 PF00849 RNA pseudouridylate synthase AMD11_RS14735 PF01479 S4 domain AMD11_RS14740 PF00563 EAL domain AMD11_RS14740 PF00990 GGDEF domain AMD11_RS14740 PF08447 PAS fold AMD11_RS14745 PF00270 DEAD/DEAH box helicase AMD11_RS14745 PF00271 Helicase conserved C-terminal domain AMD11_RS14745 PF03880 DbpA RNA binding domain AMD11_RS14750 PF04542 Sigma-70 region 2 AMD11_RS14750 PF08281 Sigma-70, region 4 AMD11_RS14760 PF13275 S4 domain AMD11_RS14770 PF01124 MAPEG family AMD11_RS14775 PF13211 AMD11_RS14775 AMD11_RS14790 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD11_RS14790 PF02805 Metal binding domain of Ada AMD11_RS14790 PF06029 AlkA N-terminal domain AMD11_RS14790 PF12833 Helix-turn-helix domain AMD11_RS14795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD11_RS14795 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMD11_RS14800 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AMD11_RS14805 PF00654 Voltage gated chloride channel AMD11_RS14810 PF00107 Zinc-binding dehydrogenase AMD11_RS14810 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS14815 PF17067 AMD11_RS14815 AMD11_RS14820 PF03203 AMD11_RS14820 AMD11_RS14825 PF00593 TonB dependent receptor AMD11_RS14825 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS14830 PF00593 TonB dependent receptor AMD11_RS14830 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS14835 PF00082 Subtilase family AMD11_RS14835 PF01483 Proprotein convertase P-domain AMD11_RS14845 PF00082 Subtilase family AMD11_RS14845 PF01483 Proprotein convertase P-domain AMD11_RS14855 PF00248 Aldo/keto reductase family AMD11_RS14860 PF07690 Major Facilitator Superfamily AMD11_RS14865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS14865 PF03466 LysR substrate binding domain AMD11_RS14875 PF06719 AMD11_RS14875 AMD11_RS14875 PF12833 Helix-turn-helix domain AMD11_RS14880 PF07883 Cupin domain AMD11_RS14885 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS14890 PF02321 Outer membrane efflux protein AMD11_RS14895 PF00873 AcrB/AcrD/AcrF family AMD11_RS14900 PF00529 HlyD family secretion protein AMD11_RS14900 PF16576 AMD11_RS14900 AMD11_RS14905 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS14905 PF14246 AefR-like transcriptional repressor, C-terminal region AMD11_RS14910 PF01475 Ferric uptake regulator family AMD11_RS14915 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD11_RS14920 PF12275 AMD11_RS14920 AMD11_RS14925 PF00795 Carbon-nitrogen hydrolase AMD11_RS14940 PF06123 AMD11_RS14940 AMD11_RS14945 PF00112 Papain family cysteine protease AMD11_RS14950 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS14950 PF00672 HAMP domain AMD11_RS14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS14955 PF00072 Response regulator receiver domain AMD11_RS14955 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS14960 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AMD11_RS14965 PF00583 Acetyltransferase (GNAT) family AMD11_RS14970 PF00270 DEAD/DEAH box helicase AMD11_RS14970 PF00271 Helicase conserved C-terminal domain AMD11_RS14970 PF02559 CarD-like/TRCF domain AMD11_RS14970 PF03461 TRCF domain AMD11_RS14985 PF14412 AMD11_RS14985 AMD11_RS14990 PF07791 AMD11_RS14990 AMD11_RS14995 PF08845 AMD11_RS14995 AMD11_RS15000 PF13466 STAS domain AMD11_RS15005 PF01584 CheW-like domain AMD11_RS15005 PF01627 Hpt domain AMD11_RS15005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS15005 PF02895 Signal transducing histidine kinase, homodimeric domain AMD11_RS15010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS15015 PF01584 CheW-like domain AMD11_RS15020 PF00072 Response regulator receiver domain AMD11_RS15020 PF00563 EAL domain AMD11_RS15025 PF01739 CheR methyltransferase, SAM binding domain AMD11_RS15025 PF03705 CheR methyltransferase, all-alpha domain AMD11_RS15030 PF00072 Response regulator receiver domain AMD11_RS15030 PF01339 CheB methylesterase AMD11_RS15035 PF13091 PLD-like domain AMD11_RS15040 PF01431 Peptidase family M13 AMD11_RS15040 PF05649 Peptidase family M13 AMD11_RS15050 PF00300 Histidine phosphatase superfamily (branch 1) AMD11_RS15055 PF04493 Endonuclease V AMD11_RS15065 PF02678 Pirin AMD11_RS15065 PF05726 Pirin C-terminal cupin domain AMD11_RS15075 PF02566 OsmC-like protein AMD11_RS15080 PF02678 Pirin AMD11_RS15080 PF05726 Pirin C-terminal cupin domain AMD11_RS15085 PF02554 AMD11_RS15085 AMD11_RS15085 PF13722 AMD11_RS15085 AMD11_RS15090 PF04328 AMD11_RS15090 AMD11_RS15095 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS15100 PF12796 Ankyrin repeats (3 copies) AMD11_RS15105 PF11187 Protein of unknown function (DUF2974) AMD11_RS15110 PF05684 AMD11_RS15110 AMD11_RS15125 PF12804 MobA-like NTP transferase domain AMD11_RS15130 PF00665 Integrase core domain AMD11_RS15135 PF01527 Transposase AMD11_RS15145 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD11_RS15145 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD11_RS15150 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD11_RS15150 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD11_RS15155 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS15155 PF01799 [2Fe-2S] binding domain AMD11_RS15160 PF00107 Zinc-binding dehydrogenase AMD11_RS15160 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS15165 PF00990 GGDEF domain AMD11_RS15165 PF02743 Cache domain AMD11_RS15170 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMD11_RS15170 PF04851 Type III restriction enzyme, res subunit AMD11_RS15180 PF02384 N-6 DNA Methylase AMD11_RS15180 PF12161 HsdM N-terminal domain AMD11_RS15195 PF00589 Phage integrase family AMD11_RS15200 PF00589 Phage integrase family AMD11_RS15205 PF00436 Single-strand binding protein family AMD11_RS15210 PF00348 Polyprenyl synthetase AMD11_RS15215 PF01738 Dienelactone hydrolase family AMD11_RS15220 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS15220 PF08245 Mur ligase middle domain AMD11_RS15235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD11_RS15235 PF00696 Amino acid kinase family AMD11_RS15235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD11_RS15240 PF02567 Phenazine biosynthesis-like protein AMD11_RS15245 PF02567 Phenazine biosynthesis-like protein AMD11_RS15250 PF05433 AMD11_RS15250 AMD11_RS15255 PF02566 OsmC-like protein AMD11_RS15260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD11_RS15260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD11_RS15265 PF03652 Uncharacterised protein family (UPF0081) AMD11_RS15270 PF02622 Uncharacterized ACR, COG1678 AMD11_RS15280 PF03352 Methyladenine glycosylase AMD11_RS15285 PF01904 Protein of unknown function DUF72 AMD11_RS15290 PF03211 Pectate lyase AMD11_RS15295 PF00437 Type II/IV secretion system protein AMD11_RS15300 PF00437 Type II/IV secretion system protein AMD11_RS15305 PF01168 Alanine racemase, N-terminal domain AMD11_RS15310 PF03807 NADP oxidoreductase coenzyme F420-dependent AMD11_RS15310 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMD11_RS15315 PF00216 Bacterial DNA-binding protein AMD11_RS15320 PF01551 Peptidase family M23 AMD11_RS15325 PF12977 Domain of Unknown Function with PDB structure (DUF3861) AMD11_RS15335 PF07273 Protein of unknown function (DUF1439) AMD11_RS15340 PF01965 DJ-1/PfpI family AMD11_RS15345 PF00856 SET domain AMD11_RS15350 PF02082 Transcriptional regulator AMD11_RS15355 PF01458 Uncharacterized protein family (UPF0051) AMD11_RS15360 PF00005 ABC transporter AMD11_RS15365 PF01458 Uncharacterized protein family (UPF0051) AMD11_RS15370 PF00266 Aminotransferase class-V AMD11_RS15375 PF13673 Acetyltransferase (GNAT) domain AMD11_RS15380 PF00355 Rieske [2Fe-2S] domain AMD11_RS15385 PF00593 TonB dependent receptor AMD11_RS15385 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS15390 PF13640 2OG-Fe(II) oxygenase superfamily AMD11_RS15395 PF08238 Sel1 repeat AMD11_RS15400 PF16357 AMD11_RS15400 AMD11_RS15405 PF10029 AMD11_RS15405 AMD11_RS15410 PF10670 AMD11_RS15410 AMD11_RS15415 PF02424 ApbE family AMD11_RS15420 PF00175 Oxidoreductase NAD-binding domain AMD11_RS15420 PF00258 Flavodoxin AMD11_RS15425 PF13202 EF hand AMD11_RS15425 PF13499 EF-hand domain pair AMD11_RS15430 PF05962 HutD AMD11_RS15435 PF12836 Helix-hairpin-helix motif AMD11_RS15440 PF01546 Peptidase family M20/M25/M40 AMD11_RS15440 PF07687 Peptidase dimerisation domain AMD11_RS15445 PF04226 AMD11_RS15445 AMD11_RS15450 PF01636 Phosphotransferase enzyme family AMD11_RS15455 PF00483 Nucleotidyl transferase AMD11_RS15460 PF00308 Bacterial dnaA protein AMD11_RS15465 PF01594 AMD11_RS15465 AMD11_RS15470 PF09839 AMD11_RS15470 AMD11_RS15475 PF00586 AIR synthase related protein, N-terminal domain AMD11_RS15475 PF02769 AIR synthase related protein, C-terminal domain AMD11_RS15485 PF00551 Formyl transferase AMD11_RS15490 PF11306 Protein of unknown function (DUF3108) AMD11_RS15495 PF11306 Protein of unknown function (DUF3108) AMD11_RS15505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD11_RS15510 PF01722 BolA-like protein AMD11_RS15515 PF00571 CBS domain AMD11_RS15515 PF01380 SIS domain AMD11_RS15520 PF08282 haloacid dehalogenase-like hydrolase AMD11_RS15525 PF06835 Lipopolysaccharide-assembly, LptC-related AMD11_RS15530 PF03968 OstA-like protein AMD11_RS15535 PF00005 ABC transporter AMD11_RS15535 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMD11_RS15540 PF00309 AMD11_RS15540 AMD11_RS15540 PF04552 Sigma-54, DNA binding domain AMD11_RS15540 PF04963 Sigma-54 factor, core binding domain AMD11_RS15545 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD11_RS15550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD11_RS15555 PF02603 HPr Serine kinase N terminus AMD11_RS15555 PF07475 HPr Serine kinase C-terminal domain AMD11_RS15560 PF03668 AMD11_RS15560 AMD11_RS15565 PF03610 PTS system fructose IIA component AMD11_RS15570 PF00381 PTS HPr component phosphorylation site AMD11_RS15575 PF00391 PEP-utilising enzyme, mobile domain AMD11_RS15575 PF02896 PEP-utilising enzyme, TIM barrel domain AMD11_RS15575 PF05524 PEP-utilising enzyme, N-terminal AMD11_RS15580 PF00571 CBS domain AMD11_RS15580 PF01769 Divalent cation transporter AMD11_RS15580 PF03448 MgtE intracellular N domain AMD11_RS15585 PF00326 Prolyl oligopeptidase family AMD11_RS15590 PF02322 AMD11_RS15590 AMD11_RS15595 PF01654 AMD11_RS15595 AMD11_RS15600 PF01244 Membrane dipeptidase (Peptidase family M19) AMD11_RS15605 PF00324 Amino acid permease AMD11_RS15610 PF00544 Pectate lyase AMD11_RS15615 PF00561 alpha/beta hydrolase fold AMD11_RS15625 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS15625 PF03472 Autoinducer binding domain AMD11_RS15630 PF13520 Amino acid permease AMD11_RS15635 PF01764 Lipase (class 3) AMD11_RS15640 PF13365 Trypsin-like peptidase domain AMD11_RS15650 PF12706 Beta-lactamase superfamily domain AMD11_RS15655 PF04820 Tryptophan halogenase AMD11_RS15660 PF13621 Cupin-like domain AMD11_RS15665 PF07277 AMD11_RS15665 AMD11_RS15670 PF00593 TonB dependent receptor AMD11_RS15670 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS15680 PF00376 MerR family regulatory protein AMD11_RS15680 PF09278 MerR, DNA binding AMD11_RS15685 PF07690 Major Facilitator Superfamily AMD11_RS15695 PF03738 Glutathionylspermidine synthase preATP-grasp AMD11_RS15700 PF06693 AMD11_RS15700 AMD11_RS15705 PF03994 AMD11_RS15705 AMD11_RS15710 PF10679 AMD11_RS15710 AMD11_RS15715 PF07885 Ion channel AMD11_RS15720 PF04012 AMD11_RS15720 AMD11_RS15725 PF09938 AMD11_RS15725 AMD11_RS15730 PF01243 Pyridoxamine 5'-phosphate oxidase AMD11_RS15730 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMD11_RS15735 PF01202 Shikimate kinase AMD11_RS15740 PF01761 3-dehydroquinate synthase AMD11_RS15750 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMD11_RS15755 PF11747 AMD11_RS15755 AMD11_RS15760 PF11747 AMD11_RS15760 AMD11_RS15765 PF11747 AMD11_RS15765 AMD11_RS15770 PF11747 AMD11_RS15770 AMD11_RS15780 PF11747 AMD11_RS15780 AMD11_RS15785 PF11747 AMD11_RS15785 AMD11_RS15805 PF08924 Domain of unknown function (DUF1906) AMD11_RS15820 PF12833 Helix-turn-helix domain AMD11_RS15820 PF14532 Sigma-54 interaction domain AMD11_RS15825 PF07690 Major Facilitator Superfamily AMD11_RS15830 PF00072 Response regulator receiver domain AMD11_RS15830 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS15830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS15830 PF07494 Two component regulator propeller AMD11_RS15830 PF07495 Y_Y_Y domain AMD11_RS15835 PF00072 Response regulator receiver domain AMD11_RS15835 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS15835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS15835 PF07494 Two component regulator propeller AMD11_RS15835 PF07495 Y_Y_Y domain AMD11_RS15845 PF00072 Response regulator receiver domain AMD11_RS15845 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS15845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS15845 PF07494 Two component regulator propeller AMD11_RS15845 PF07495 Y_Y_Y domain AMD11_RS15850 PF04264 YceI-like domain AMD11_RS15855 PF01292 Prokaryotic cytochrome b561 AMD11_RS15860 PF04264 YceI-like domain AMD11_RS15865 PF05768 Glutaredoxin-like domain (DUF836) AMD11_RS15870 PF03313 AMD11_RS15870 AMD11_RS15870 PF03315 Serine dehydratase beta chain AMD11_RS15875 PF00561 alpha/beta hydrolase fold AMD11_RS15880 PF00742 Homoserine dehydrogenase AMD11_RS15880 PF03447 Homoserine dehydrogenase, NAD binding domain AMD11_RS15885 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD11_RS15890 PF00561 alpha/beta hydrolase fold AMD11_RS15895 PF01551 Peptidase family M23 AMD11_RS15900 PF00009 Elongation factor Tu GTP binding domain AMD11_RS15900 PF16658 AMD11_RS15900 AMD11_RS15905 PF03006 AMD11_RS15905 AMD11_RS15910 PF05170 AMD11_RS15910 AMD11_RS15915 PF00571 CBS domain AMD11_RS15920 PF00535 Glycosyl transferase family 2 AMD11_RS15925 PF00912 Transglycosylase AMD11_RS15930 PF01430 Hsp33 protein AMD11_RS15940 PF00593 TonB dependent receptor AMD11_RS15940 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS15945 PF13181 Tetratricopeptide repeat AMD11_RS15945 PF13469 Sulfotransferase family AMD11_RS15950 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS15955 PF12146 Putative lysophospholipase AMD11_RS15960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD11_RS15960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD11_RS15960 PF09317 AMD11_RS15960 AMD11_RS15965 PF06993 AMD11_RS15965 AMD11_RS15970 PF07690 Major Facilitator Superfamily AMD11_RS15975 PF00144 Beta-lactamase AMD11_RS15985 PF01597 Glycine cleavage H-protein AMD11_RS15990 PF01571 Aminomethyltransferase folate-binding domain AMD11_RS15990 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD11_RS15995 PF01957 NfeD-like C-terminal, partner-binding AMD11_RS16000 PF16200 AMD11_RS16000 AMD11_RS16005 PF02694 AMD11_RS16005 AMD11_RS16010 PF03819 MazG nucleotide pyrophosphohydrolase domain AMD11_RS16015 PF00459 Inositol monophosphatase family AMD11_RS16020 PF00293 NUDIX domain AMD11_RS16025 PF00202 Aminotransferase class-III AMD11_RS16030 PF04452 RNA methyltransferase AMD11_RS16035 PF02685 Glucokinase AMD11_RS16040 PF00593 TonB dependent receptor AMD11_RS16040 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16045 PF01120 Alpha-L-fucosidase AMD11_RS16045 PF16757 AMD11_RS16045 AMD11_RS16050 PF00704 Glycosyl hydrolases family 18 AMD11_RS16055 PF00728 Glycosyl hydrolase family 20, catalytic domain AMD11_RS16055 PF02838 Glycosyl hydrolase family 20, domain 2 AMD11_RS16055 PF13290 AMD11_RS16055 AMD11_RS16060 PF00703 Glycosyl hydrolases family 2 AMD11_RS16065 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS16065 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS16065 PF07691 PA14 domain AMD11_RS16065 PF14310 Fibronectin type III-like domain AMD11_RS16070 PF00593 TonB dependent receptor AMD11_RS16070 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16070 PF13620 Carboxypeptidase regulatory-like domain AMD11_RS16075 PF01301 Glycosyl hydrolases family 35 AMD11_RS16080 PF13520 Amino acid permease AMD11_RS16085 PF00294 pfkB family carbohydrate kinase AMD11_RS16090 PF02056 Family 4 glycosyl hydrolase AMD11_RS16090 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMD11_RS16095 PF06824 Protein of unknown function (DUF1237) AMD11_RS16100 PF07971 Glycosyl hydrolase family 92 AMD11_RS16105 PF01301 Glycosyl hydrolases family 35 AMD11_RS16120 PF11747 AMD11_RS16120 AMD11_RS16125 PF13088 BNR repeat-like domain AMD11_RS16135 PF03932 CutC family AMD11_RS16140 PF01112 Asparaginase AMD11_RS16150 PF13302 Acetyltransferase (GNAT) domain AMD11_RS16155 PF01584 CheW-like domain AMD11_RS16160 PF01339 CheB methylesterase AMD11_RS16165 PF00072 Response regulator receiver domain AMD11_RS16165 PF01584 CheW-like domain AMD11_RS16165 PF01627 Hpt domain AMD11_RS16165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS16165 PF02895 Signal transducing histidine kinase, homodimeric domain AMD11_RS16170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS16175 PF01584 CheW-like domain AMD11_RS16180 PF00072 Response regulator receiver domain AMD11_RS16185 PF00072 Response regulator receiver domain AMD11_RS16190 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMD11_RS16190 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMD11_RS16195 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS16200 PF03747 ADP-ribosylglycohydrolase AMD11_RS16205 PF00814 Glycoprotease family AMD11_RS16210 PF00270 DEAD/DEAH box helicase AMD11_RS16210 PF13307 Helicase C-terminal domain AMD11_RS16220 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS16220 PF00912 Transglycosylase AMD11_RS16220 PF14814 Bifunctional transglycosylase second domain AMD11_RS16225 PF00535 Glycosyl transferase family 2 AMD11_RS16225 PF13692 Glycosyl transferases group 1 AMD11_RS16235 PF02824 TGS domain AMD11_RS16235 PF04607 Region found in RelA / SpoT proteins AMD11_RS16235 PF13291 ACT domain AMD11_RS16235 PF13328 HD domain AMD11_RS16240 PF12706 Beta-lactamase superfamily domain AMD11_RS16245 PF03070 TENA/THI-4/PQQC family AMD11_RS16250 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMD11_RS16255 PF04055 Radical SAM superfamily AMD11_RS16255 PF13186 Iron-sulfur cluster-binding domain AMD11_RS16255 PF13353 4Fe-4S single cluster domain AMD11_RS16265 PF10142 PhoPQ-activated pathogenicity-related protein AMD11_RS16270 PF02685 Glucokinase AMD11_RS16275 PF00593 TonB dependent receptor AMD11_RS16275 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16280 PF00270 DEAD/DEAH box helicase AMD11_RS16280 PF00271 Helicase conserved C-terminal domain AMD11_RS16280 PF04408 Helicase associated domain (HA2) AMD11_RS16280 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMD11_RS16280 PF11898 AMD11_RS16280 AMD11_RS16285 PF00210 Ferritin-like domain AMD11_RS16290 PF00270 DEAD/DEAH box helicase AMD11_RS16290 PF00271 Helicase conserved C-terminal domain AMD11_RS16290 PF00570 HRDC domain AMD11_RS16290 PF09382 RQC domain AMD11_RS16290 PF16124 AMD11_RS16290 AMD11_RS16300 PF00072 Response regulator receiver domain AMD11_RS16310 PF01479 S4 domain AMD11_RS16325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS16325 PF00672 HAMP domain AMD11_RS16325 PF12729 AMD11_RS16325 AMD11_RS16330 PF01810 AMD11_RS16330 AMD11_RS16335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS16335 PF03466 LysR substrate binding domain AMD11_RS16340 PF00072 Response regulator receiver domain AMD11_RS16345 PF07536 AMD11_RS16345 AMD11_RS16345 PF08448 PAS fold AMD11_RS16350 PF06508 Queuosine biosynthesis protein QueC AMD11_RS16360 PF04055 Radical SAM superfamily AMD11_RS16360 PF13394 4Fe-4S single cluster domain AMD11_RS16365 PF13525 Outer membrane lipoprotein AMD11_RS16365 PF16331 AMD11_RS16365 AMD11_RS16370 PF00691 OmpA family AMD11_RS16375 PF04052 TolB amino-terminal domain AMD11_RS16375 PF07676 WD40-like Beta Propeller Repeat AMD11_RS16380 PF13103 TonB C terminal AMD11_RS16385 PF02472 Biopolymer transport protein ExbD/TolR AMD11_RS16390 PF01618 AMD11_RS16390 AMD11_RS16395 PF03061 Thioesterase superfamily AMD11_RS16400 PF05491 Holliday junction DNA helicase ruvB C-terminus AMD11_RS16400 PF05496 Holliday junction DNA helicase ruvB N-terminus AMD11_RS16410 PF02705 AMD11_RS16410 AMD11_RS16415 PF01330 RuvA N terminal domain AMD11_RS16415 PF07499 RuvA, C-terminal domain AMD11_RS16415 PF14520 Helix-hairpin-helix domain AMD11_RS16420 PF02075 Crossover junction endodeoxyribonuclease RuvC AMD11_RS16425 PF01709 Transcriptional regulator AMD11_RS16430 PF12697 Alpha/beta hydrolase family AMD11_RS16435 PF13673 Acetyltransferase (GNAT) domain AMD11_RS16440 PF00152 tRNA synthetases class II (D, K and N) AMD11_RS16440 PF01336 OB-fold nucleic acid binding domain AMD11_RS16440 PF02938 GAD domain AMD11_RS16445 PF11218 AMD11_RS16445 AMD11_RS16450 PF09723 AMD11_RS16450 AMD11_RS16455 PF07690 Major Facilitator Superfamily AMD11_RS16460 PF00593 TonB dependent receptor AMD11_RS16460 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16475 PF13354 Beta-lactamase enzyme family AMD11_RS16480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS16480 PF03466 LysR substrate binding domain AMD11_RS16485 PF14317 AMD11_RS16485 AMD11_RS16490 PF00005 ABC transporter AMD11_RS16490 PF12848 ABC transporter AMD11_RS16490 PF16326 AMD11_RS16490 AMD11_RS16495 PF00593 TonB dependent receptor AMD11_RS16495 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS16510 PF00593 TonB dependent receptor AMD11_RS16510 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16515 PF00593 TonB dependent receptor AMD11_RS16515 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16520 PF00067 Cytochrome P450 AMD11_RS16525 PF00999 Sodium/hydrogen exchanger family AMD11_RS16525 PF02254 TrkA-N domain AMD11_RS16545 PF03328 HpcH/HpaI aldolase/citrate lyase family AMD11_RS16550 PF00593 TonB dependent receptor AMD11_RS16550 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16555 PF02655 ATP-grasp domain AMD11_RS16560 PF04183 IucA / IucC family AMD11_RS16560 PF06276 Ferric iron reductase FhuF-like transporter AMD11_RS16565 PF07690 Major Facilitator Superfamily AMD11_RS16570 PF04183 IucA / IucC family AMD11_RS16570 PF06276 Ferric iron reductase FhuF-like transporter AMD11_RS16575 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD11_RS16575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD11_RS16590 PF02654 AMD11_RS16590 AMD11_RS16595 PF00300 Histidine phosphatase superfamily (branch 1) AMD11_RS16600 PF02277 Phosphoribosyltransferase AMD11_RS16605 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMD11_RS16610 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD11_RS16610 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMD11_RS16615 PF00155 Aminotransferase class I and II AMD11_RS16620 PF03186 AMD11_RS16620 AMD11_RS16625 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMD11_RS16625 PF12557 Cob(I)alamin adenosyltransferase N terminal AMD11_RS16640 PF00593 TonB dependent receptor AMD11_RS16640 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16645 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS16645 PF02861 Clp amino terminal domain AMD11_RS16645 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS16645 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS16650 PF00005 ABC transporter AMD11_RS16655 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS16660 PF09084 NMT1/THI5 like AMD11_RS16665 PF00248 Aldo/keto reductase family AMD11_RS16670 PF00296 Luciferase-like monooxygenase AMD11_RS16675 PF00593 TonB dependent receptor AMD11_RS16675 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16680 PF01541 GIY-YIG catalytic domain AMD11_RS16685 PF14497 Glutathione S-transferase, C-terminal domain AMD11_RS16690 PF11219 AMD11_RS16690 AMD11_RS16695 PF07007 Protein of unknown function (DUF1311) AMD11_RS16710 PF12098 AMD11_RS16710 AMD11_RS16715 PF00593 TonB dependent receptor AMD11_RS16715 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS16720 PF02358 Trehalose-phosphatase AMD11_RS16725 PF00723 Glycosyl hydrolases family 15 AMD11_RS16730 PF00982 Glycosyltransferase family 20 AMD11_RS16735 PF01011 PQQ enzyme repeat AMD11_RS16735 PF13360 PQQ-like domain AMD11_RS16740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS16745 PF04134 AMD11_RS16745 AMD11_RS16750 PF13761 AMD11_RS16750 AMD11_RS16755 PF02578 Multi-copper polyphenol oxidoreductase laccase AMD11_RS16760 PF00849 RNA pseudouridylate synthase AMD11_RS16765 PF13525 Outer membrane lipoprotein AMD11_RS16775 PF00795 Carbon-nitrogen hydrolase AMD11_RS16775 PF02540 NAD synthase AMD11_RS16780 PF04480 Protein of unknown function (DUF559) AMD11_RS16785 PF01527 Transposase AMD11_RS16795 PF13333 AMD11_RS16795 AMD11_RS16805 PF01471 Putative peptidoglycan binding domain AMD11_RS16805 PF13406 Transglycosylase SLT domain AMD11_RS16810 PF01526 AMD11_RS16810 AMD11_RS16810 PF13700 AMD11_RS16810 AMD11_RS16815 PF00589 Phage integrase family AMD11_RS16825 PF11740 AMD11_RS16825 AMD11_RS16830 PF01129 NAD:arginine ADP-ribosyltransferase AMD11_RS16845 PF12760 Transposase zinc-ribbon domain AMD11_RS16845 PF12762 AMD11_RS16845 AMD11_RS16850 PF00549 CoA-ligase AMD11_RS16850 PF02629 CoA binding domain AMD11_RS16855 PF00549 CoA-ligase AMD11_RS16855 PF08442 ATP-grasp domain AMD11_RS16860 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS16865 PF00072 Response regulator receiver domain AMD11_RS16865 PF00158 Sigma-54 interaction domain AMD11_RS16865 PF02954 Bacterial regulatory protein, Fis family AMD11_RS16880 PF00437 Type II/IV secretion system protein AMD11_RS16880 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD11_RS16885 PF00114 Pilin (bacterial filament) AMD11_RS16885 PF13633 Prokaryotic N-terminal methylation site AMD11_RS16890 PF00114 Pilin (bacterial filament) AMD11_RS16890 PF13633 Prokaryotic N-terminal methylation site AMD11_RS16895 PF00482 Type II secretion system (T2SS), protein F AMD11_RS16900 PF01478 Type IV leader peptidase family AMD11_RS16900 PF06750 AMD11_RS16900 AMD11_RS16905 PF01121 Dephospho-CoA kinase AMD11_RS16910 PF05593 AMD11_RS16910 AMD11_RS16915 PF08845 AMD11_RS16915 AMD11_RS16920 PF01527 Transposase AMD11_RS16925 PF00665 Integrase core domain AMD11_RS16925 PF13276 AMD11_RS16925 AMD11_RS16930 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS16930 PF00672 HAMP domain AMD11_RS16930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS16935 PF00072 Response regulator receiver domain AMD11_RS16935 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS16945 PF08443 RimK-like ATP-grasp domain AMD11_RS16950 PF00128 Alpha amylase, catalytic domain AMD11_RS16950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD11_RS16955 PF00816 H-NS histone family AMD11_RS16965 PF00565 Staphylococcal nuclease homologue AMD11_RS16975 PF03389 MobA/MobL family AMD11_RS16985 PF03167 Uracil DNA glycosylase superfamily AMD11_RS16990 PF14412 AMD11_RS16990 AMD11_RS16995 PF07791 AMD11_RS16995 AMD11_RS17005 PF04002 RadC-like JAB domain AMD11_RS17020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS17030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS17030 PF08448 PAS fold AMD11_RS17035 PF00072 Response regulator receiver domain AMD11_RS17050 PF04940 Sensors of blue-light using FAD AMD11_RS17075 PF01527 Transposase AMD11_RS17080 PF00665 Integrase core domain AMD11_RS17090 PF16162 AMD11_RS17090 AMD11_RS17100 PF13560 Helix-turn-helix domain AMD11_RS17120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS17120 PF08448 PAS fold AMD11_RS17130 PF02517 CAAX protease self-immunity AMD11_RS17145 PF13676 TIR domain AMD11_RS17150 PF00589 Phage integrase family AMD11_RS17160 PF00657 GDSL-like Lipase/Acylhydrolase AMD11_RS17160 PF03797 Autotransporter beta-domain AMD11_RS17165 PF02597 ThiS family AMD11_RS17170 PF05690 Thiazole biosynthesis protein ThiG AMD11_RS17175 PF02390 Putative methyltransferase AMD11_RS17180 PF02080 TrkA-C domain AMD11_RS17180 PF03600 Citrate transporter AMD11_RS17185 PF00355 Rieske [2Fe-2S] domain AMD11_RS17195 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD11_RS17200 PF01741 Large-conductance mechanosensitive channel, MscL AMD11_RS17205 PF04389 Peptidase family M28 AMD11_RS17215 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS17215 PF13377 Periplasmic binding protein-like domain AMD11_RS17220 PF00593 TonB dependent receptor AMD11_RS17220 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17225 PF00703 Glycosyl hydrolases family 2 AMD11_RS17225 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD11_RS17225 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD11_RS17225 PF13385 Concanavalin A-like lectin/glucanases superfamily AMD11_RS17230 PF10566 Glycoside hydrolase 97 AMD11_RS17230 PF14508 Glycosyl-hydrolase 97 N-terminal AMD11_RS17230 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD11_RS17235 PF03080 AMD11_RS17235 AMD11_RS17240 PF00135 Carboxylesterase family AMD11_RS17245 PF00588 SpoU rRNA Methylase family AMD11_RS17245 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD11_RS17250 PF13302 Acetyltransferase (GNAT) domain AMD11_RS17255 PF01433 Peptidase family M1 AMD11_RS17255 PF11838 ERAP1-like C-terminal domain AMD11_RS17260 PF07791 AMD11_RS17260 AMD11_RS17265 PF13333 AMD11_RS17265 AMD11_RS17275 PF01527 Transposase AMD11_RS17280 PF07791 AMD11_RS17280 AMD11_RS17305 PF00873 AcrB/AcrD/AcrF family AMD11_RS17310 PF16576 AMD11_RS17310 AMD11_RS17315 PF00009 Elongation factor Tu GTP binding domain AMD11_RS17315 PF01583 Adenylylsulphate kinase AMD11_RS17320 PF01507 Phosphoadenosine phosphosulfate reductase family AMD11_RS17325 PF00175 Oxidoreductase NAD-binding domain AMD11_RS17325 PF00258 Flavodoxin AMD11_RS17325 PF00667 FAD binding domain AMD11_RS17330 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD11_RS17330 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD11_RS17335 PF01507 Phosphoadenosine phosphosulfate reductase family AMD11_RS17340 PF03929 AMD11_RS17340 AMD11_RS17345 PF00593 TonB dependent receptor AMD11_RS17345 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17355 PF01590 GAF domain AMD11_RS17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS17370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS17370 PF03466 LysR substrate binding domain AMD11_RS17375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD11_RS17380 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS17385 PF04191 Phospholipid methyltransferase AMD11_RS17390 PF01661 Macro domain AMD11_RS17395 PF00274 Fructose-bisphosphate aldolase class-I AMD11_RS17400 PF00224 Pyruvate kinase, barrel domain AMD11_RS17400 PF02887 Pyruvate kinase, alpha/beta domain AMD11_RS17405 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS17410 PF00162 Phosphoglycerate kinase AMD11_RS17415 PF13163 AMD11_RS17415 AMD11_RS17420 PF10101 AMD11_RS17420 AMD11_RS17430 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD11_RS17430 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD11_RS17435 PF08332 Calcium/calmodulin dependent protein kinase II Association AMD11_RS17440 PF03922 OmpW family AMD11_RS17445 PF03922 OmpW family AMD11_RS17450 PF02265 S1/P1 Nuclease AMD11_RS17455 PF00753 Metallo-beta-lactamase superfamily AMD11_RS17460 PF13531 Bacterial extracellular solute-binding protein AMD11_RS17465 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS17470 PF00005 ABC transporter AMD11_RS17480 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS17480 PF05569 BlaR1 peptidase M56 AMD11_RS17485 PF03965 Penicillinase repressor AMD11_RS17490 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMD11_RS17495 PF16670 AMD11_RS17495 AMD11_RS17500 PF00593 TonB dependent receptor AMD11_RS17500 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17505 PF01471 Putative peptidoglycan binding domain AMD11_RS17505 PF03734 L,D-transpeptidase catalytic domain AMD11_RS17510 PF01551 Peptidase family M23 AMD11_RS17520 PF00593 TonB dependent receptor AMD11_RS17520 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17535 PF00456 Transketolase, thiamine diphosphate binding domain AMD11_RS17535 PF02779 Transketolase, pyrimidine binding domain AMD11_RS17535 PF02780 Transketolase, C-terminal domain AMD11_RS17540 PF00375 Sodium:dicarboxylate symporter family AMD11_RS17545 PF13584 AMD11_RS17545 AMD11_RS17550 PF00515 Tetratricopeptide repeat AMD11_RS17550 PF13519 von Willebrand factor type A domain AMD11_RS17555 PF00092 von Willebrand factor type A domain AMD11_RS17560 PF14316 AMD11_RS17560 AMD11_RS17565 PF01882 AMD11_RS17565 AMD11_RS17570 PF07726 ATPase family associated with various cellular activities (AAA) AMD11_RS17575 PF00263 AMD11_RS17575 AMD11_RS17575 PF03958 Bacterial type II/III secretion system short domain AMD11_RS17575 PF07660 Secretin and TonB N terminus short domain AMD11_RS17580 PF04351 Pilus assembly protein, PilP AMD11_RS17585 PF04350 Pilus assembly protein, PilO AMD11_RS17590 PF05137 AMD11_RS17590 AMD11_RS17595 PF11104 Type IV pilus assembly protein PilM; AMD11_RS17600 PF00905 Penicillin binding protein transpeptidase domain AMD11_RS17600 PF00912 Transglycosylase AMD11_RS17600 PF17092 AMD11_RS17600 AMD11_RS17610 PF00285 Citrate synthase AMD11_RS17615 PF01197 Ribosomal protein L31 AMD11_RS17620 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD11_RS17625 PF00270 DEAD/DEAH box helicase AMD11_RS17625 PF00271 Helicase conserved C-terminal domain AMD11_RS17625 PF17191 AMD11_RS17625 AMD11_RS17630 PF01042 Endoribonuclease L-PSP AMD11_RS17635 PF02824 TGS domain AMD11_RS17635 PF04607 Region found in RelA / SpoT proteins AMD11_RS17635 PF13291 ACT domain AMD11_RS17635 PF13328 HD domain AMD11_RS17640 PF01192 RNA polymerase Rpb6 AMD11_RS17645 PF00625 Guanylate kinase AMD11_RS17650 PF03755 AMD11_RS17650 AMD11_RS17650 PF08340 AMD11_RS17650 AMD11_RS17655 PF01138 3' exoribonuclease family, domain 1 AMD11_RS17655 PF03725 3' exoribonuclease family, domain 2 AMD11_RS17660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS17665 PF01725 Ham1 family AMD11_RS17670 PF04055 Radical SAM superfamily AMD11_RS17670 PF06969 HemN C-terminal domain AMD11_RS17675 PF07793 AMD11_RS17675 AMD11_RS17680 PF07238 PilZ domain AMD11_RS17685 PF00557 Metallopeptidase family M24 AMD11_RS17695 PF00557 Metallopeptidase family M24 AMD11_RS17695 PF05195 Aminopeptidase P, N-terminal domain AMD11_RS17700 PF03695 Uncharacterised protein family (UPF0149) AMD11_RS17710 PF05164 Cell division protein ZapA AMD11_RS17715 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMD11_RS17720 PF01878 EVE domain AMD11_RS17725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMD11_RS17730 PF02643 Uncharacterized ACR, COG1430 AMD11_RS17735 PF13369 AMD11_RS17735 AMD11_RS17735 PF13371 Tetratricopeptide repeat AMD11_RS17740 PF00301 Rubredoxin AMD11_RS17745 PF02581 Thiamine monophosphate synthase/TENI AMD11_RS17750 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17760 PF00202 Aminotransferase class-III AMD11_RS17765 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS17765 PF13424 Tetratricopeptide repeat AMD11_RS17765 PF13481 AAA domain AMD11_RS17770 PF00127 Copper binding proteins, plastocyanin/azurin family AMD11_RS17775 PF00155 Aminotransferase class I and II AMD11_RS17780 PF01042 Endoribonuclease L-PSP AMD11_RS17785 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD11_RS17790 PF01593 Flavin containing amine oxidoreductase AMD11_RS17795 PF00593 TonB dependent receptor AMD11_RS17795 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17805 PF00202 Aminotransferase class-III AMD11_RS17810 PF00520 Ion transport protein AMD11_RS17815 PF00106 short chain dehydrogenase AMD11_RS17825 PF01569 PAP2 superfamily AMD11_RS17825 PF09335 AMD11_RS17825 AMD11_RS17825 PF14067 AMD11_RS17825 AMD11_RS17830 PF01062 AMD11_RS17830 AMD11_RS17835 PF02190 ATP-dependent protease La (LON) domain AMD11_RS17840 PF01225 Mur ligase family, catalytic domain AMD11_RS17840 PF02875 Mur ligase family, glutamate ligase domain AMD11_RS17840 PF08245 Mur ligase middle domain AMD11_RS17845 PF00406 Adenylate kinase AMD11_RS17850 PF00365 Phosphofructokinase AMD11_RS17860 PF03030 Inorganic H+ pyrophosphatase AMD11_RS17870 PF00719 Inorganic pyrophosphatase AMD11_RS17875 PF08668 HDOD domain AMD11_RS17880 PF00593 TonB dependent receptor AMD11_RS17880 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17885 PF12833 Helix-turn-helix domain AMD11_RS17890 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS17890 PF07676 WD40-like Beta Propeller Repeat AMD11_RS17895 PF01964 ThiC family AMD11_RS17895 PF13667 ThiC-associated domain AMD11_RS17900 PF00593 TonB dependent receptor AMD11_RS17900 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS17905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS17910 PF01019 Gamma-glutamyltranspeptidase AMD11_RS17915 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMD11_RS17915 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AMD11_RS17920 PF00205 Thiamine pyrophosphate enzyme, central domain AMD11_RS17920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD11_RS17920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD11_RS17925 PF13710 ACT domain AMD11_RS17930 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS17935 PF00682 HMGL-like AMD11_RS17935 PF08502 LeuA allosteric (dimerisation) domain AMD11_RS17940 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD11_RS17945 PF00694 Aconitase C-terminal domain AMD11_RS17950 PF00330 Aconitase family (aconitate hydratase) AMD11_RS17955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS17955 PF03466 LysR substrate binding domain AMD11_RS17960 PF00990 GGDEF domain AMD11_RS17960 PF07494 Two component regulator propeller AMD11_RS17960 PF07495 Y_Y_Y domain AMD11_RS17965 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS17965 PF14246 AefR-like transcriptional repressor, C-terminal region AMD11_RS17970 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMD11_RS17975 PF02321 Outer membrane efflux protein AMD11_RS17980 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMD11_RS17985 PF03279 AMD11_RS17985 AMD11_RS17990 PF04932 AMD11_RS17990 AMD11_RS17995 PF00534 Glycosyl transferases group 1 AMD11_RS17995 PF13439 Glycosyltransferase Family 4 AMD11_RS18000 PF10276 Zinc-finger domain AMD11_RS18005 PF07971 Glycosyl hydrolase family 92 AMD11_RS18010 PF00390 Malic enzyme, N-terminal domain AMD11_RS18010 PF01515 Phosphate acetyl/butaryl transferase AMD11_RS18010 PF03949 Malic enzyme, NAD binding domain AMD11_RS18015 PF00375 Sodium:dicarboxylate symporter family AMD11_RS18020 PF07396 Phosphate-selective porin O and P AMD11_RS18025 PF00072 Response regulator receiver domain AMD11_RS18025 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS18025 PF02743 Cache domain AMD11_RS18025 PF12860 AMD11_RS18025 AMD11_RS18030 PF00083 Sugar (and other) transporter AMD11_RS18035 PF13531 Bacterial extracellular solute-binding protein AMD11_RS18040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS18040 PF03466 LysR substrate binding domain AMD11_RS18045 PF00248 Aldo/keto reductase family AMD11_RS18050 PF12680 SnoaL-like domain AMD11_RS18055 PF11512 Agrobacterium tumefaciens protein Atu4866 AMD11_RS18060 PF00072 Response regulator receiver domain AMD11_RS18060 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS18065 PF13531 Bacterial extracellular solute-binding protein AMD11_RS18070 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS18070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS18070 PF08521 AMD11_RS18070 AMD11_RS18075 PF00072 Response regulator receiver domain AMD11_RS18075 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS18080 PF07396 Phosphate-selective porin O and P AMD11_RS18085 PF03600 Citrate transporter AMD11_RS18090 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS18095 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS18095 PF13377 Periplasmic binding protein-like domain AMD11_RS18100 PF07690 Major Facilitator Superfamily AMD11_RS18105 PF00593 TonB dependent receptor AMD11_RS18105 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS18110 PF00128 Alpha amylase, catalytic domain AMD11_RS18115 PF01965 DJ-1/PfpI family AMD11_RS18120 PF08014 AMD11_RS18120 AMD11_RS18125 PF03193 Protein of unknown function, DUF258 AMD11_RS18130 PF00155 Aminotransferase class I and II AMD11_RS18135 PF13472 GDSL-like Lipase/Acylhydrolase family AMD11_RS18140 PF08242 Methyltransferase domain AMD11_RS18145 PF00593 TonB dependent receptor AMD11_RS18145 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS18150 PF01522 Polysaccharide deacetylase AMD11_RS18155 PF00462 Glutaredoxin AMD11_RS18155 PF00581 Rhodanese-like domain AMD11_RS18165 PF06041 Bacterial protein of unknown function (DUF924) AMD11_RS18170 PF01527 Transposase AMD11_RS18175 PF13683 AMD11_RS18175 AMD11_RS18180 PF09284 Rhamnogalacturonase B, N-terminal AMD11_RS18180 PF14683 Polysaccharide lyase family 4, domain III AMD11_RS18180 PF14686 Polysaccharide lyase family 4, domain II AMD11_RS18190 PF02645 Uncharacterised protein, DegV family COG1307 AMD11_RS18195 PF01327 Polypeptide deformylase AMD11_RS18200 PF03960 ArsC family AMD11_RS18210 PF02225 PA domain AMD11_RS18215 PF05420 AMD11_RS18215 AMD11_RS18215 PF13432 Tetratricopeptide repeat AMD11_RS18215 PF14559 Tetratricopeptide repeat AMD11_RS18220 PF01270 Glycosyl hydrolases family 8 AMD11_RS18225 PF03170 Bacterial cellulose synthase subunit AMD11_RS18230 PF00535 Glycosyl transferase family 2 AMD11_RS18230 PF07238 PilZ domain AMD11_RS18245 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD11_RS18265 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD11_RS18265 PF13641 Glycosyltransferase like family 2 AMD11_RS18275 PF00535 Glycosyl transferase family 2 AMD11_RS18285 PF01636 Phosphotransferase enzyme family AMD11_RS18295 PF04973 AMD11_RS18295 AMD11_RS18300 PF00392 Bacterial regulatory proteins, gntR family AMD11_RS18300 PF07702 UTRA domain AMD11_RS18310 PF00263 AMD11_RS18310 AMD11_RS18310 PF03958 Bacterial type II/III secretion system short domain AMD11_RS18320 PF10741 AMD11_RS18320 AMD11_RS18325 PF05137 AMD11_RS18325 AMD11_RS18330 PF03934 Type II secretion system (T2SS), protein K AMD11_RS18340 PF13544 AMD11_RS18340 AMD11_RS18345 PF12019 Type II transport protein GspH AMD11_RS18350 PF08334 Type II secretion system (T2SS), protein G AMD11_RS18355 PF00482 Type II secretion system (T2SS), protein F AMD11_RS18360 PF00437 Type II/IV secretion system protein AMD11_RS18360 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD11_RS18365 PF00082 Subtilase family AMD11_RS18365 PF04151 Bacterial pre-peptidase C-terminal domain AMD11_RS18370 PF05658 Head domain of trimeric autotransporter adhesin AMD11_RS18370 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD11_RS18370 PF13018 AMD11_RS18370 AMD11_RS18375 PF00082 Subtilase family AMD11_RS18375 PF04151 Bacterial pre-peptidase C-terminal domain AMD11_RS18380 PF03895 YadA-like C-terminal region AMD11_RS18380 PF05658 Head domain of trimeric autotransporter adhesin AMD11_RS18380 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD11_RS18390 PF02769 AIR synthase related protein, C-terminal domain AMD11_RS18390 PF13507 CobB/CobQ-like glutamine amidotransferase domain AMD11_RS18395 PF10411 Disulfide bond isomerase protein N-terminus AMD11_RS18395 PF13098 Thioredoxin-like domain AMD11_RS18400 PF00589 Phage integrase family AMD11_RS18400 PF02899 Phage integrase, N-terminal SAM-like domain AMD11_RS18405 PF06271 AMD11_RS18405 AMD11_RS18415 PF03739 AMD11_RS18415 AMD11_RS18420 PF03739 AMD11_RS18420 AMD11_RS18425 PF00883 Cytosol aminopeptidase family, catalytic domain AMD11_RS18425 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD11_RS18435 PF04364 DNA polymerase III chi subunit, HolC AMD11_RS18440 PF00133 tRNA synthetases class I (I, L, M and V) AMD11_RS18440 PF08264 Anticodon-binding domain of tRNA AMD11_RS18440 PF10458 Valyl tRNA synthetase tRNA binding arm AMD11_RS18445 PF00593 TonB dependent receptor AMD11_RS18445 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS18450 PF01464 Transglycosylase SLT domain AMD11_RS18450 PF14718 Soluble lytic murein transglycosylase L domain AMD11_RS18455 PF00544 Pectate lyase AMD11_RS18460 PF00583 Acetyltransferase (GNAT) family AMD11_RS18470 PF01066 CDP-alcohol phosphatidyltransferase AMD11_RS18475 PF13511 AMD11_RS18475 AMD11_RS18480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD11_RS18480 PF03129 Anticodon binding domain AMD11_RS18480 PF04073 Aminoacyl-tRNA editing domain AMD11_RS18485 PF00816 H-NS histone family AMD11_RS18490 PF06738 AMD11_RS18490 AMD11_RS18490 PF12821 AMD11_RS18490 AMD11_RS18495 PF02405 AMD11_RS18495 AMD11_RS18500 PF00005 ABC transporter AMD11_RS18505 PF02470 AMD11_RS18505 AMD11_RS18510 PF03886 Protein of unknown function (DUF330) AMD11_RS18515 PF13532 2OG-Fe(II) oxygenase superfamily AMD11_RS18520 PF01946 Thi4 family AMD11_RS18520 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AMD11_RS18525 PF05045 AMD11_RS18525 AMD11_RS18525 PF14307 AMD11_RS18525 AMD11_RS18530 PF01144 Coenzyme A transferase AMD11_RS18535 PF01144 Coenzyme A transferase AMD11_RS18540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD11_RS18540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD11_RS18540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD11_RS18540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD11_RS18545 PF00483 Nucleotidyl transferase AMD11_RS18545 PF01050 Mannose-6-phosphate isomerase AMD11_RS18550 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD11_RS18550 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD11_RS18550 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD11_RS18555 PF04321 RmlD substrate binding domain AMD11_RS18560 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMD11_RS18565 PF00483 Nucleotidyl transferase AMD11_RS18570 PF16363 AMD11_RS18570 AMD11_RS18575 PF01012 Electron transfer flavoprotein domain AMD11_RS18580 PF00766 Electron transfer flavoprotein FAD-binding domain AMD11_RS18580 PF01012 Electron transfer flavoprotein domain AMD11_RS18585 PF03706 AMD11_RS18585 AMD11_RS18590 PF01040 UbiA prenyltransferase family AMD11_RS18595 PF01565 FAD binding domain AMD11_RS18600 PF00106 short chain dehydrogenase AMD11_RS18610 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS18615 PF01593 Flavin containing amine oxidoreductase AMD11_RS18620 PF04138 AMD11_RS18620 AMD11_RS18630 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMD11_RS18640 PF00535 Glycosyl transferase family 2 AMD11_RS18650 PF00005 ABC transporter AMD11_RS18650 PF14524 Wzt C-terminal domain AMD11_RS18655 PF01061 AMD11_RS18655 AMD11_RS18660 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD11_RS18665 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS18665 PF00571 CBS domain AMD11_RS18670 PF04325 Protein of unknown function (DUF465) AMD11_RS18680 PF14346 Domain of unknown function (DUF4398) AMD11_RS18685 PF00437 Type II/IV secretion system protein AMD11_RS18695 PF13410 Glutathione S-transferase, C-terminal domain AMD11_RS18695 PF13417 Glutathione S-transferase, N-terminal domain AMD11_RS18700 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD11_RS18705 PF00270 DEAD/DEAH box helicase AMD11_RS18705 PF00271 Helicase conserved C-terminal domain AMD11_RS18710 PF02225 PA domain AMD11_RS18715 PF00593 TonB dependent receptor AMD11_RS18715 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS18720 PF01242 6-pyruvoyl tetrahydropterin synthase AMD11_RS18725 PF09361 AMD11_RS18725 AMD11_RS18730 PF13500 AAA domain AMD11_RS18740 PF13185 GAF domain AMD11_RS18745 PF04994 TfoX C-terminal domain AMD11_RS18750 PF00756 Putative esterase AMD11_RS18755 PF00593 TonB dependent receptor AMD11_RS18755 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS18760 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS18765 PF00817 impB/mucB/samB family AMD11_RS18765 PF11799 impB/mucB/samB family C-terminal domain AMD11_RS18770 PF07977 FabA-like domain AMD11_RS18775 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD11_RS18775 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD11_RS18785 PF01432 Peptidase family M3 AMD11_RS18790 PF00291 Pyridoxal-phosphate dependent enzyme AMD11_RS18800 PF00394 Multicopper oxidase AMD11_RS18800 PF07731 Multicopper oxidase AMD11_RS18800 PF07732 Multicopper oxidase AMD11_RS18805 PF05275 AMD11_RS18805 AMD11_RS18810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD11_RS18820 PF01471 Putative peptidoglycan binding domain AMD11_RS18835 PF01380 SIS domain AMD11_RS18835 PF13522 Glutamine amidotransferase domain AMD11_RS18840 PF13437 HlyD family secretion protein AMD11_RS18840 PF13533 Biotin-lipoyl like AMD11_RS18845 PF00005 ABC transporter AMD11_RS18850 PF02687 AMD11_RS18850 AMD11_RS18850 PF12704 MacB-like periplasmic core domain AMD11_RS18855 PF02687 AMD11_RS18855 AMD11_RS18855 PF12704 MacB-like periplasmic core domain AMD11_RS18865 PF00072 Response regulator receiver domain AMD11_RS18865 PF00158 Sigma-54 interaction domain AMD11_RS18870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS18875 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS18875 PF12804 MobA-like NTP transferase domain AMD11_RS18875 PF14602 Hexapeptide repeat of succinyl-transferase AMD11_RS18880 PF04138 AMD11_RS18880 AMD11_RS18885 PF01817 Chorismate mutase type II AMD11_RS18890 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMD11_RS18890 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMD11_RS18895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS18895 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD11_RS18900 PF00231 ATP synthase AMD11_RS18905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS18905 PF00306 ATP synthase alpha/beta chain, C terminal domain AMD11_RS18905 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD11_RS18910 PF00213 ATP synthase delta (OSCP) subunit AMD11_RS18915 PF00430 ATP synthase B/B' CF(0) AMD11_RS18920 PF00137 ATP synthase subunit C AMD11_RS18925 PF00119 ATP synthase A chain AMD11_RS18945 PF00364 Biotin-requiring enzyme AMD11_RS18945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD11_RS18945 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS18955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD11_RS18955 PF00364 Biotin-requiring enzyme AMD11_RS18955 PF02817 e3 binding domain AMD11_RS18960 PF11101 AMD11_RS18960 AMD11_RS18965 PF03167 Uracil DNA glycosylase superfamily AMD11_RS18970 PF03922 OmpW family AMD11_RS18995 PF03180 NLPA lipoprotein AMD11_RS19000 PF00528 Binding-protein-dependent transport system inner membrane component AMD11_RS19005 PF00005 ABC transporter AMD11_RS19005 PF09383 NIL domain AMD11_RS19010 PF00892 EamA-like transporter family AMD11_RS19015 PF04461 Protein of unknown function (DUF520) AMD11_RS19025 PF00072 Response regulator receiver domain AMD11_RS19025 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS19025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS19030 PF12146 Putative lysophospholipase AMD11_RS19035 PF07209 AMD11_RS19035 AMD11_RS19045 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS19050 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS19055 PF00849 RNA pseudouridylate synthase AMD11_RS19060 PF05175 Methyltransferase small domain AMD11_RS19070 PF07995 Glucose / Sorbosone dehydrogenase AMD11_RS19075 PF11607 Protein of unknown function (DUF3247) AMD11_RS19080 PF00072 Response regulator receiver domain AMD11_RS19080 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS19080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS19080 PF08448 PAS fold AMD11_RS19080 PF13188 PAS domain AMD11_RS19095 PF11454 AMD11_RS19095 AMD11_RS19100 PF00842 Alanine racemase, C-terminal domain AMD11_RS19100 PF01168 Alanine racemase, N-terminal domain AMD11_RS19105 PF01266 FAD dependent oxidoreductase AMD11_RS19110 PF01037 AsnC family AMD11_RS19110 PF13404 AsnC-type helix-turn-helix domain AMD11_RS19120 PF01641 SelR domain AMD11_RS19125 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme AMD11_RS19130 PF01618 AMD11_RS19130 AMD11_RS19135 PF00691 OmpA family AMD11_RS19135 PF13677 AMD11_RS19135 AMD11_RS19145 PF13223 AMD11_RS19145 AMD11_RS19155 PF11730 AMD11_RS19155 AMD11_RS19160 PF01061 AMD11_RS19160 AMD11_RS19165 PF00005 ABC transporter AMD11_RS19170 PF00999 Sodium/hydrogen exchanger family AMD11_RS19175 PF02469 Fasciclin domain AMD11_RS19180 PF03167 Uracil DNA glycosylase superfamily AMD11_RS19180 PF13566 AMD11_RS19180 AMD11_RS19185 PF04055 Radical SAM superfamily AMD11_RS19190 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD11_RS19195 PF07681 AMD11_RS19195 AMD11_RS19200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS19200 PF03466 LysR substrate binding domain AMD11_RS19205 PF03358 NADPH-dependent FMN reductase AMD11_RS19210 PF00248 Aldo/keto reductase family AMD11_RS19215 PF00535 Glycosyl transferase family 2 AMD11_RS19220 PF01431 Peptidase family M13 AMD11_RS19220 PF05649 Peptidase family M13 AMD11_RS19225 PF09995 AMD11_RS19225 AMD11_RS19240 PF13520 Amino acid permease AMD11_RS19250 PF00072 Response regulator receiver domain AMD11_RS19250 PF04397 LytTr DNA-binding domain AMD11_RS19255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS19255 PF06580 AMD11_RS19255 AMD11_RS19260 PF01266 FAD dependent oxidoreductase AMD11_RS19270 PF05974 Domain of unknown function (DUF892) AMD11_RS19275 PF05067 Manganese containing catalase AMD11_RS19295 PF01339 CheB methylesterase AMD11_RS19295 PF01739 CheR methyltransferase, SAM binding domain AMD11_RS19295 PF03705 CheR methyltransferase, all-alpha domain AMD11_RS19295 PF07536 AMD11_RS19295 AMD11_RS19295 PF08447 PAS fold AMD11_RS19295 PF13596 PAS domain AMD11_RS19300 PF00072 Response regulator receiver domain AMD11_RS19310 PF00072 Response regulator receiver domain AMD11_RS19310 PF00158 Sigma-54 interaction domain AMD11_RS19310 PF02954 Bacterial regulatory protein, Fis family AMD11_RS19320 PF01654 AMD11_RS19320 AMD11_RS19325 PF02322 AMD11_RS19325 AMD11_RS19340 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS19345 PF16363 AMD11_RS19345 AMD11_RS19350 PF13692 Glycosyl transferases group 1 AMD11_RS19355 PF03275 UDP-galactopyranose mutase AMD11_RS19355 PF13450 NAD(P)-binding Rossmann-like domain AMD11_RS19365 PF00005 ABC transporter AMD11_RS19365 PF00664 ABC transporter transmembrane region AMD11_RS19370 PF12244 AMD11_RS19370 AMD11_RS19375 PF13628 AMD11_RS19375 AMD11_RS19380 PF00107 Zinc-binding dehydrogenase AMD11_RS19380 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS19380 PF13823 Alcohol dehydrogenase GroES-associated AMD11_RS19390 PF03692 AMD11_RS19390 AMD11_RS19405 PF11828 AMD11_RS19405 AMD11_RS19420 PF11445 AMD11_RS19420 AMD11_RS19425 PF00593 TonB dependent receptor AMD11_RS19425 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS19430 PF12040 AMD11_RS19430 AMD11_RS19435 PF12040 AMD11_RS19435 AMD11_RS19435 PF12679 AMD11_RS19435 AMD11_RS19440 PF00005 ABC transporter AMD11_RS19445 PF00246 Zinc carboxypeptidase AMD11_RS19450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS19450 PF03466 LysR substrate binding domain AMD11_RS19455 PF01042 Endoribonuclease L-PSP AMD11_RS19465 PF01527 Transposase AMD11_RS19470 PF00665 Integrase core domain AMD11_RS19480 PF12849 PBP superfamily domain AMD11_RS19485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD11_RS19485 PF00672 HAMP domain AMD11_RS19490 PF01223 DNA/RNA non-specific endonuclease AMD11_RS19495 PF12697 Alpha/beta hydrolase family AMD11_RS19500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS19500 PF03466 LysR substrate binding domain AMD11_RS19505 PF02525 Flavodoxin-like fold AMD11_RS19510 PF03795 YCII-related domain AMD11_RS19520 PF07866 Protein of unknown function (DUF1653) AMD11_RS19545 PF00557 Metallopeptidase family M24 AMD11_RS19550 PF11903 AMD11_RS19550 AMD11_RS19565 PF00140 Sigma-70 factor, region 1 AMD11_RS19565 PF03979 Sigma-70 factor, region 1 AMD11_RS19565 PF04539 Sigma-70 region 3 AMD11_RS19565 PF04542 Sigma-70 region 2 AMD11_RS19565 PF04545 Sigma-70, region 4 AMD11_RS19565 PF04546 Sigma-70, non-essential region AMD11_RS19570 PF02580 D-Tyr-tRNA(Tyr) deacylase AMD11_RS19575 PF03279 AMD11_RS19575 AMD11_RS19580 PF13420 Acetyltransferase (GNAT) domain AMD11_RS19590 PF00925 GTP cyclohydrolase II AMD11_RS19595 PF03703 AMD11_RS19595 AMD11_RS19600 PF03703 AMD11_RS19600 AMD11_RS19605 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD11_RS19610 PF00535 Glycosyl transferase family 2 AMD11_RS19615 PF04932 AMD11_RS19615 AMD11_RS19620 PF13231 AMD11_RS19620 AMD11_RS19625 PF01029 NusB family AMD11_RS19625 PF01189 NOL1/NOP2/sun family AMD11_RS19630 PF00551 Formyl transferase AMD11_RS19630 PF02911 Formyl transferase, C-terminal domain AMD11_RS19635 PF01327 Polypeptide deformylase AMD11_RS19640 PF01476 LysM domain AMD11_RS19645 PF02481 DNA recombination-mediator protein A AMD11_RS19650 PF04361 AMD11_RS19650 AMD11_RS19655 PF00114 Pilin (bacterial filament) AMD11_RS19655 PF14237 AMD11_RS19655 AMD11_RS19660 PF06271 AMD11_RS19660 AMD11_RS19660 PF14237 AMD11_RS19660 AMD11_RS19665 PF01131 DNA topoisomerase AMD11_RS19665 PF01751 Toprim domain AMD11_RS19665 PF13368 AMD11_RS19665 AMD11_RS19670 PF01300 Telomere recombination AMD11_RS19685 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS19695 PF01343 Peptidase family S49 AMD11_RS19700 PF01554 MatE AMD11_RS19705 PF12412 AMD11_RS19705 AMD11_RS19710 PF11304 AMD11_RS19710 AMD11_RS19720 PF00270 DEAD/DEAH box helicase AMD11_RS19720 PF00271 Helicase conserved C-terminal domain AMD11_RS19725 PF13410 Glutathione S-transferase, C-terminal domain AMD11_RS19725 PF13417 Glutathione S-transferase, N-terminal domain AMD11_RS19730 PF01936 NYN domain AMD11_RS19730 PF12872 OST-HTH/LOTUS domain AMD11_RS19740 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD11_RS19745 PF03458 AMD11_RS19745 AMD11_RS19750 PF00140 Sigma-70 factor, region 1 AMD11_RS19750 PF04542 Sigma-70 region 2 AMD11_RS19750 PF04545 Sigma-70, region 4 AMD11_RS19755 PF03167 Uracil DNA glycosylase superfamily AMD11_RS19760 PF00072 Response regulator receiver domain AMD11_RS19765 PF02687 AMD11_RS19765 AMD11_RS19770 PF00005 ABC transporter AMD11_RS19775 PF00270 DEAD/DEAH box helicase AMD11_RS19775 PF00271 Helicase conserved C-terminal domain AMD11_RS19775 PF12300 AMD11_RS19775 AMD11_RS19780 PF00085 Thioredoxin AMD11_RS19785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD11_RS19785 PF07497 Rho termination factor, RNA-binding domain AMD11_RS19785 PF07498 Rho termination factor, N-terminal domain AMD11_RS19790 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMD11_RS19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS19795 PF03466 LysR substrate binding domain AMD11_RS19805 PF03971 Monomeric isocitrate dehydrogenase AMD11_RS19815 PF00270 DEAD/DEAH box helicase AMD11_RS19820 PF09704 CRISPR-associated protein (Cas_Cas5) AMD11_RS19830 PF05107 AMD11_RS19830 AMD11_RS19835 PF01930 Domain of unknown function DUF83 AMD11_RS19840 PF01867 CRISPR associated protein Cas1 AMD11_RS19845 PF09827 CRISPR associated protein Cas2 AMD11_RS19855 PF01476 LysM domain AMD11_RS19860 PF14489 QueF-like protein AMD11_RS19860 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMD11_RS19865 PF01546 Peptidase family M20/M25/M40 AMD11_RS19865 PF07687 Peptidase dimerisation domain AMD11_RS19870 PF16576 AMD11_RS19870 AMD11_RS19875 PF00873 AcrB/AcrD/AcrF family AMD11_RS19880 PF00873 AcrB/AcrD/AcrF family AMD11_RS19885 PF07063 Domain of unknown function (DUF1338) AMD11_RS19900 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS19905 PF13202 EF hand AMD11_RS19910 PF13202 EF hand AMD11_RS19920 PF14255 AMD11_RS19920 AMD11_RS19925 PF01427 D-ala-D-ala dipeptidase AMD11_RS19930 PF01510 N-acetylmuramoyl-L-alanine amidase AMD11_RS19935 PF00877 NlpC/P60 family AMD11_RS19935 PF12913 SH3 domain of the SH3b1 type AMD11_RS19935 PF12914 SH3 domain of SH3b2 type AMD11_RS19940 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD11_RS19940 PF13378 Enolase C-terminal domain-like AMD11_RS19950 PF13520 Amino acid permease AMD11_RS19965 PF05360 AMD11_RS19965 AMD11_RS19970 PF07995 Glucose / Sorbosone dehydrogenase AMD11_RS19975 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS19975 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS19975 PF14310 Fibronectin type III-like domain AMD11_RS19980 PF02152 Dihydroneopterin aldolase AMD11_RS19985 PF00814 Glycoprotease family AMD11_RS19990 PF01165 Ribosomal protein S21 AMD11_RS19995 PF09424 Yqey-like protein AMD11_RS20000 PF03631 AMD11_RS20000 AMD11_RS20005 PF01807 CHC2 zinc finger AMD11_RS20005 PF08275 DNA primase catalytic core, N-terminal domain AMD11_RS20005 PF08278 DNA primase DnaG DnaB-binding AMD11_RS20005 PF10410 DnaB-helicase binding domain of primase AMD11_RS20005 PF13155 Toprim-like AMD11_RS20010 PF13593 SBF-like CPA transporter family (DUF4137) AMD11_RS20015 PF13899 Thioredoxin-like AMD11_RS20020 PF01040 UbiA prenyltransferase family AMD11_RS20025 PF02628 AMD11_RS20025 AMD11_RS20035 PF02104 AMD11_RS20035 AMD11_RS20040 PF11137 AMD11_RS20040 AMD11_RS20045 PF00510 Cytochrome c oxidase subunit III AMD11_RS20050 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMD11_RS20055 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD11_RS20060 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD11_RS20060 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMD11_RS20065 PF10003 AMD11_RS20065 AMD11_RS20070 PF00171 Aldehyde dehydrogenase family AMD11_RS20070 PF01619 Proline dehydrogenase AMD11_RS20070 PF14850 DNA-binding domain of Proline dehydrogenase AMD11_RS20105 PF00579 tRNA synthetases class I (W and Y) AMD11_RS20110 PF01551 Peptidase family M23 AMD11_RS20110 PF04225 Opacity-associated protein A LysM-like domain AMD11_RS20115 PF03702 Uncharacterised protein family (UPF0075) AMD11_RS20125 PF07690 Major Facilitator Superfamily AMD11_RS20130 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS20135 PF00156 Phosphoribosyl transferase domain AMD11_RS20145 PF13614 AAA domain AMD11_RS20150 PF02195 ParB-like nuclease domain AMD11_RS20155 PF11731 AMD11_RS20155 AMD11_RS20160 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS20165 PF00535 Glycosyl transferase family 2 AMD11_RS20170 PF07578 Lipid A Biosynthesis N-terminal domain AMD11_RS20180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD11_RS20180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD11_RS20180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD11_RS20180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD11_RS20185 PF00692 dUTPase AMD11_RS20190 PF02441 Flavoprotein AMD11_RS20190 PF04127 DNA / pantothenate metabolism flavoprotein AMD11_RS20195 PF04002 RadC-like JAB domain AMD11_RS20200 PF00750 tRNA synthetases class I (R) AMD11_RS20200 PF03485 Arginyl tRNA synthetase N terminal domain AMD11_RS20200 PF05746 DALR anticodon binding domain AMD11_RS20205 PF05036 Sporulation related domain AMD11_RS20215 PF00106 short chain dehydrogenase AMD11_RS20220 PF01757 AMD11_RS20220 AMD11_RS20225 PF03033 Glycosyltransferase family 28 N-terminal domain AMD11_RS20230 PF00501 AMP-binding enzyme AMD11_RS20230 PF00550 Phosphopantetheine attachment site AMD11_RS20230 PF00668 Condensation domain AMD11_RS20230 PF00975 Thioesterase domain AMD11_RS20230 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS20240 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD11_RS20240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD11_RS20245 PF01564 Spermine/spermidine synthase AMD11_RS20250 PF09851 AMD11_RS20250 AMD11_RS20250 PF14470 Bacterial PH domain AMD11_RS20260 PF13505 Outer membrane protein beta-barrel domain AMD11_RS20270 PF02838 Glycosyl hydrolase family 20, domain 2 AMD11_RS20270 PF07555 beta-N-acetylglucosaminidase AMD11_RS20275 PF00543 Nitrogen regulatory protein P-II AMD11_RS20280 PF04380 AMD11_RS20280 AMD11_RS20285 PF01078 Magnesium chelatase, subunit ChlI AMD11_RS20285 PF13541 Subunit ChlI of Mg-chelatase AMD11_RS20290 PF00589 Phage integrase family AMD11_RS20305 PF02452 PemK-like protein AMD11_RS20310 PF13683 AMD11_RS20310 AMD11_RS20315 PF04471 Restriction endonuclease AMD11_RS20320 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS20320 PF13361 UvrD-like helicase C-terminal domain AMD11_RS20325 PF13175 AAA ATPase domain AMD11_RS20330 PF00665 Integrase core domain AMD11_RS20335 PF01527 Transposase AMD11_RS20340 PF05866 Endodeoxyribonuclease RusA AMD11_RS20350 PF13304 AAA domain AMD11_RS20360 PF13280 AMD11_RS20360 AMD11_RS20370 PF00899 ThiF family AMD11_RS20370 PF14457 AMD11_RS20370 AMD11_RS20370 PF14464 Prokaryotic homologs of the JAB domain AMD11_RS20375 PF01381 Helix-turn-helix AMD11_RS20380 PF01078 Magnesium chelatase, subunit ChlI AMD11_RS20380 PF13335 AMD11_RS20380 AMD11_RS20385 PF08212 Lipocalin-like domain AMD11_RS20395 PF00563 EAL domain AMD11_RS20395 PF12792 AMD11_RS20395 AMD11_RS20400 PF00487 AMD11_RS20400 AMD11_RS20405 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD11_RS20405 PF00175 Oxidoreductase NAD-binding domain AMD11_RS20405 PF00970 Oxidoreductase FAD-binding domain AMD11_RS20410 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS20425 PF01145 SPFH domain / Band 7 family AMD11_RS20430 PF01139 tRNA-splicing ligase RtcB AMD11_RS20440 PF00326 Prolyl oligopeptidase family AMD11_RS20445 PF11379 AMD11_RS20445 AMD11_RS20465 PF13628 AMD11_RS20465 AMD11_RS20470 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS20470 PF08338 Domain of unknown function (DUF1731) AMD11_RS20475 PF00072 Response regulator receiver domain AMD11_RS20475 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS20480 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS20480 PF00672 HAMP domain AMD11_RS20480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS20490 PF11769 AMD11_RS20490 AMD11_RS20500 PF13180 PDZ domain AMD11_RS20500 PF13365 Trypsin-like peptidase domain AMD11_RS20520 PF01594 AMD11_RS20520 AMD11_RS20525 PF13419 Haloacid dehalogenase-like hydrolase AMD11_RS20530 PF00883 Cytosol aminopeptidase family, catalytic domain AMD11_RS20540 PF04542 Sigma-70 region 2 AMD11_RS20540 PF08281 Sigma-70, region 4 AMD11_RS20545 PF00199 Catalase AMD11_RS20550 PF01292 Prokaryotic cytochrome b561 AMD11_RS20555 PF06283 Trehalose utilisation AMD11_RS20560 PF00072 Response regulator receiver domain AMD11_RS20560 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS20565 PF07730 Histidine kinase AMD11_RS20570 PF16576 AMD11_RS20570 AMD11_RS20575 PF00005 ABC transporter AMD11_RS20580 PF02687 AMD11_RS20580 AMD11_RS20580 PF12704 MacB-like periplasmic core domain AMD11_RS20585 PF02687 AMD11_RS20585 AMD11_RS20585 PF12704 MacB-like periplasmic core domain AMD11_RS20590 PF12697 Alpha/beta hydrolase family AMD11_RS20600 PF00892 EamA-like transporter family AMD11_RS20610 PF02225 PA domain AMD11_RS20610 PF04389 Peptidase family M28 AMD11_RS20615 PF00753 Metallo-beta-lactamase superfamily AMD11_RS20620 PF00579 tRNA synthetases class I (W and Y) AMD11_RS20620 PF07411 Domain of unknown function (DUF1508) AMD11_RS20625 PF05532 CsbD-like AMD11_RS20630 PF08085 AMD11_RS20630 AMD11_RS20635 PF08085 AMD11_RS20635 AMD11_RS20640 PF00491 Arginase family AMD11_RS20645 PF03259 Roadblock/LC7 domain AMD11_RS20665 PF02223 Thymidylate kinase AMD11_RS20675 PF05036 Sporulation related domain AMD11_RS20680 PF03309 Type III pantothenate kinase AMD11_RS20685 PF02237 Biotin protein ligase C terminal domain AMD11_RS20685 PF03099 Biotin/lipoate A/B protein ligase family AMD11_RS20685 PF08279 HTH domain AMD11_RS20695 PF06167 Glucose-regulated metallo-peptidase M90 AMD11_RS20700 PF07394 AMD11_RS20700 AMD11_RS20705 PF08811 AMD11_RS20705 AMD11_RS20710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS20715 PF00072 Response regulator receiver domain AMD11_RS20715 PF00486 Transcriptional regulatory protein, C terminal AMD11_RS20725 PF01207 Dihydrouridine synthase (Dus) AMD11_RS20735 PF12796 Ankyrin repeats (3 copies) AMD11_RS20745 PF13307 Helicase C-terminal domain AMD11_RS20760 PF01488 Shikimate / quinate 5-dehydrogenase AMD11_RS20760 PF08501 Shikimate dehydrogenase substrate binding domain AMD11_RS20765 PF07676 WD40-like Beta Propeller Repeat AMD11_RS20770 PF00175 Oxidoreductase NAD-binding domain AMD11_RS20770 PF00258 Flavodoxin AMD11_RS20770 PF03929 AMD11_RS20770 AMD11_RS20775 PF01223 DNA/RNA non-specific endonuclease AMD11_RS20780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS20780 PF03466 LysR substrate binding domain AMD11_RS20785 PF01370 NAD dependent epimerase/dehydratase family AMD11_RS20790 PF00490 Delta-aminolevulinic acid dehydratase AMD11_RS20810 PF05960 Bacterial protein of unknown function (DUF885) AMD11_RS20815 PF00326 Prolyl oligopeptidase family AMD11_RS20815 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD11_RS20820 PF00043 Glutathione S-transferase, C-terminal domain AMD11_RS20820 PF02798 Glutathione S-transferase, N-terminal domain AMD11_RS20830 PF00593 TonB dependent receptor AMD11_RS20830 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS20835 PF07277 AMD11_RS20835 AMD11_RS20840 PF13621 Cupin-like domain AMD11_RS20845 PF04820 Tryptophan halogenase AMD11_RS20850 PF03544 Gram-negative bacterial TonB protein C-terminal AMD11_RS20855 PF12679 AMD11_RS20855 AMD11_RS20860 PF00005 ABC transporter AMD11_RS20865 PF00561 alpha/beta hydrolase fold AMD11_RS20865 PF08386 TAP-like protein AMD11_RS20870 PF01381 Helix-turn-helix AMD11_RS20880 PF01229 Glycosyl hydrolases family 39 AMD11_RS20885 PF02583 Metal-sensitive transcriptional repressor AMD11_RS20890 PF01545 Cation efflux family AMD11_RS20900 PF00593 TonB dependent receptor AMD11_RS20900 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS20905 PF11287 AMD11_RS20905 AMD11_RS20910 PF01965 DJ-1/PfpI family AMD11_RS20910 PF12833 Helix-turn-helix domain AMD11_RS20915 PF00175 Oxidoreductase NAD-binding domain AMD11_RS20915 PF00970 Oxidoreductase FAD-binding domain AMD11_RS20920 PF00005 ABC transporter AMD11_RS20925 PF01061 AMD11_RS20925 AMD11_RS20930 PF12686 AMD11_RS20930 AMD11_RS20935 PF02558 Ketopantoate reductase PanE/ApbA AMD11_RS20935 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMD11_RS20945 PF03061 Thioesterase superfamily AMD11_RS20955 PF00085 Thioredoxin AMD11_RS20960 PF00258 Flavodoxin AMD11_RS20965 PF00268 Ribonucleotide reductase, small chain AMD11_RS20970 PF00317 Ribonucleotide reductase, all-alpha domain AMD11_RS20970 PF02867 Ribonucleotide reductase, barrel domain AMD11_RS20975 PF04332 AMD11_RS20975 AMD11_RS20980 PF13302 Acetyltransferase (GNAT) domain AMD11_RS20980 PF13380 CoA binding domain AMD11_RS20980 PF13549 ATP-grasp domain AMD11_RS20980 PF13607 Succinyl-CoA ligase like flavodoxin domain AMD11_RS20985 PF00571 CBS domain AMD11_RS20985 PF01769 Divalent cation transporter AMD11_RS20985 PF03448 MgtE intracellular N domain AMD11_RS20990 PF00194 Eukaryotic-type carbonic anhydrase AMD11_RS20995 PF00999 Sodium/hydrogen exchanger family AMD11_RS20995 PF02254 TrkA-N domain AMD11_RS21000 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD11_RS21000 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD11_RS21005 PF00723 Glycosyl hydrolases family 15 AMD11_RS21015 PF00023 Ankyrin repeat AMD11_RS21015 PF12796 Ankyrin repeats (3 copies) AMD11_RS21020 PF05166 YcgL domain AMD11_RS21025 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD11_RS21025 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD11_RS21030 PF13723 AMD11_RS21030 AMD11_RS21035 PF00535 Glycosyl transferase family 2 AMD11_RS21040 PF04820 Tryptophan halogenase AMD11_RS21040 PF13450 NAD(P)-binding Rossmann-like domain AMD11_RS21050 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS21065 PF03176 MMPL family AMD11_RS21085 PF03279 AMD11_RS21085 AMD11_RS21090 PF07977 FabA-like domain AMD11_RS21095 PF01553 Acyltransferase AMD11_RS21105 PF00550 Phosphopantetheine attachment site AMD11_RS21110 PF04820 Tryptophan halogenase AMD11_RS21125 PF00501 AMP-binding enzyme AMD11_RS21130 PF00326 Prolyl oligopeptidase family AMD11_RS21130 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD11_RS21145 PF01218 Coproporphyrinogen III oxidase AMD11_RS21150 PF00476 DNA polymerase family A AMD11_RS21150 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD11_RS21150 PF01612 3'-5' exonuclease AMD11_RS21150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD11_RS21155 PF11191 Protein of unknown function (DUF2782) AMD11_RS21160 PF06812 AMD11_RS21160 AMD11_RS21165 PF05860 haemagglutination activity domain AMD11_RS21170 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD11_RS21170 PF08479 POTRA domain, ShlB-type AMD11_RS21180 PF00069 Protein kinase domain AMD11_RS21180 PF03781 Sulfatase-modifying factor enzyme 1 AMD11_RS21185 PF13672 Protein phosphatase 2C AMD11_RS21190 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) AMD11_RS21195 PF06744 AMD11_RS21195 AMD11_RS21195 PF06761 AMD11_RS21195 AMD11_RS21195 PF14331 AMD11_RS21195 AMD11_RS21200 PF00691 OmpA family AMD11_RS21200 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AMD11_RS21205 PF05936 AMD11_RS21205 AMD11_RS21210 PF00498 FHA domain AMD11_RS21220 PF05954 Phage late control gene D protein (GPD) AMD11_RS21225 PF00515 Tetratricopeptide repeat AMD11_RS21225 PF13489 Methyltransferase domain AMD11_RS21230 PF05488 PAAR motif AMD11_RS21235 PF00069 Protein kinase domain AMD11_RS21235 PF13374 Tetratricopeptide repeat AMD11_RS21235 PF13424 Tetratricopeptide repeat AMD11_RS21240 PF07638 ECF sigma factor AMD11_RS21245 PF04542 Sigma-70 region 2 AMD11_RS21245 PF08281 Sigma-70, region 4 AMD11_RS21250 PF04773 FecR protein AMD11_RS21250 PF16220 AMD11_RS21250 AMD11_RS21250 PF16344 AMD11_RS21250 AMD11_RS21255 PF00593 TonB dependent receptor AMD11_RS21255 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS21260 PF00328 Histidine phosphatase superfamily (branch 2) AMD11_RS21265 PF01419 Jacalin-like lectin domain AMD11_RS21285 PF01609 Transposase DDE domain AMD11_RS21290 PF00004 ATPase family associated with various cellular activities (AAA) AMD11_RS21290 PF07724 AAA domain (Cdc48 subfamily) AMD11_RS21290 PF10431 C-terminal, D2-small domain, of ClpB protein AMD11_RS21295 PF06996 AMD11_RS21295 AMD11_RS21300 PF05947 AMD11_RS21300 AMD11_RS21305 PF04965 Gene 25-like lysozyme AMD11_RS21310 PF07024 ImpE protein AMD11_RS21315 PF05638 Protein of unknown function (DUF796) AMD11_RS21320 PF05943 AMD11_RS21320 AMD11_RS21325 PF05591 AMD11_RS21325 AMD11_RS21330 PF12833 Helix-turn-helix domain AMD11_RS21335 PF00582 Universal stress protein family AMD11_RS21340 PF00132 Bacterial transferase hexapeptide (six repeats) AMD11_RS21340 PF12464 Maltose acetyltransferase AMD11_RS21345 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS21345 PF13361 UvrD-like helicase C-terminal domain AMD11_RS21350 PF13454 FAD-NAD(P)-binding AMD11_RS21360 PF13091 PLD-like domain AMD11_RS21360 PF13396 AMD11_RS21360 AMD11_RS21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS21365 PF03466 LysR substrate binding domain AMD11_RS21370 PF03737 Demethylmenaquinone methyltransferase AMD11_RS21375 PF04303 PrpF protein AMD11_RS21380 PF04909 Amidohydrolase AMD11_RS21385 PF00471 Ribosomal protein L33 AMD11_RS21390 PF00830 Ribosomal L28 family AMD11_RS21395 PF00873 AcrB/AcrD/AcrF family AMD11_RS21400 PF16576 AMD11_RS21400 AMD11_RS21405 PF02321 Outer membrane efflux protein AMD11_RS21415 PF05960 Bacterial protein of unknown function (DUF885) AMD11_RS21420 PF02527 rRNA small subunit methyltransferase G AMD11_RS21425 PF09423 PhoD-like phosphatase AMD11_RS21425 PF16655 AMD11_RS21425 AMD11_RS21430 PF09423 PhoD-like phosphatase AMD11_RS21430 PF16655 AMD11_RS21430 AMD11_RS21435 PF01648 4'-phosphopantetheinyl transferase superfamily AMD11_RS21445 PF04226 AMD11_RS21445 AMD11_RS21450 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD11_RS21455 PF03372 Endonuclease/Exonuclease/phosphatase family AMD11_RS21460 PF00480 ROK family AMD11_RS21470 PF13616 PPIC-type PPIASE domain AMD11_RS21475 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD11_RS21480 PF00474 Sodium:solute symporter family AMD11_RS21485 PF04341 AMD11_RS21485 AMD11_RS21495 PF00501 AMP-binding enzyme AMD11_RS21495 PF13193 AMP-binding enzyme C-terminal domain AMD11_RS21495 PF16177 AMD11_RS21495 AMD11_RS21500 PF00072 Response regulator receiver domain AMD11_RS21500 PF00196 Bacterial regulatory proteins, luxR family AMD11_RS21505 PF14415 Domain of unknown function (DUF4424) AMD11_RS21515 PF00578 AhpC/TSA family AMD11_RS21525 PF04616 Glycosyl hydrolases family 43 AMD11_RS21535 PF00248 Aldo/keto reductase family AMD11_RS21540 PF04909 Amidohydrolase AMD11_RS21545 PF13561 Enoyl-(Acyl carrier protein) reductase AMD11_RS21550 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD11_RS21555 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD11_RS21555 PF13378 Enolase C-terminal domain-like AMD11_RS21565 PF05336 Domain of unknown function (DUF718) AMD11_RS21570 PF07690 Major Facilitator Superfamily AMD11_RS21575 PF01614 Bacterial transcriptional regulator AMD11_RS21575 PF09339 IclR helix-turn-helix domain AMD11_RS21580 PF02659 AMD11_RS21580 AMD11_RS21585 PF00072 Response regulator receiver domain AMD11_RS21585 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS21585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS21585 PF12860 AMD11_RS21585 AMD11_RS21595 PF15979 AMD11_RS21595 AMD11_RS21600 PF06165 Glycosyltransferase family 36 AMD11_RS21600 PF17167 AMD11_RS21600 AMD11_RS21605 PF13347 MFS/sugar transport protein AMD11_RS21610 PF01202 Shikimate kinase AMD11_RS21615 PF13360 PQQ-like domain AMD11_RS21635 PF04357 AMD11_RS21635 AMD11_RS21640 PF01103 Surface antigen AMD11_RS21640 PF07244 Surface antigen variable number repeat AMD11_RS21655 PF01527 Transposase AMD11_RS21665 PF13333 AMD11_RS21665 AMD11_RS21670 PF00005 ABC transporter AMD11_RS21670 PF00664 ABC transporter transmembrane region AMD11_RS21675 PF02092 AMD11_RS21675 AMD11_RS21675 PF05746 DALR anticodon binding domain AMD11_RS21680 PF02091 Glycyl-tRNA synthetase alpha subunit AMD11_RS21685 PF00437 Type II/IV secretion system protein AMD11_RS21685 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD11_RS21695 PF00117 Glutamine amidotransferase class-I AMD11_RS21705 PF00902 Sec-independent protein translocase protein (TatC) AMD11_RS21710 PF02416 mttA/Hcf106 family AMD11_RS21715 PF02416 mttA/Hcf106 family AMD11_RS21720 PF04366 AMD11_RS21720 AMD11_RS21725 PF00762 Ferrochelatase AMD11_RS21730 PF00561 alpha/beta hydrolase fold AMD11_RS21740 PF01863 Protein of unknown function DUF45 AMD11_RS21745 PF04381 Putative exonuclease, RdgC AMD11_RS21750 PF01171 PP-loop family AMD11_RS21760 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS21760 PF13377 Periplasmic binding protein-like domain AMD11_RS21765 PF03648 Glycosyl hydrolase family 67 N-terminus AMD11_RS21765 PF07477 Glycosyl hydrolase family 67 C-terminus AMD11_RS21765 PF07488 Glycosyl hydrolase family 67 middle domain AMD11_RS21770 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD11_RS21770 PF03629 Domain of unknown function (DUF303) AMD11_RS21775 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD11_RS21775 PF13378 Enolase C-terminal domain-like AMD11_RS21780 PF04616 Glycosyl hydrolases family 43 AMD11_RS21785 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD11_RS21785 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD11_RS21785 PF07691 PA14 domain AMD11_RS21785 PF14310 Fibronectin type III-like domain AMD11_RS21790 PF01232 Mannitol dehydrogenase Rossmann domain AMD11_RS21790 PF08125 Mannitol dehydrogenase C-terminal domain AMD11_RS21805 PF01344 Kelch motif AMD11_RS21805 PF13964 Kelch motif AMD11_RS21810 PF00440 Bacterial regulatory proteins, tetR family AMD11_RS21815 PF00171 Aldehyde dehydrogenase family AMD11_RS21835 PF00596 Class II Aldolase and Adducin N-terminal domain AMD11_RS21840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD11_RS21840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD11_RS21845 PF09694 AMD11_RS21845 AMD11_RS21850 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AMD11_RS21865 PF08450 SMP-30/Gluconolaconase/LRE-like region AMD11_RS21870 PF00331 Glycosyl hydrolase family 10 AMD11_RS21875 PF00703 Glycosyl hydrolases family 2 AMD11_RS21875 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD11_RS21875 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD11_RS21875 PF16355 AMD11_RS21875 AMD11_RS21880 PF02614 Glucuronate isomerase AMD11_RS21885 PF00331 Glycosyl hydrolase family 10 AMD11_RS21900 PF00331 Glycosyl hydrolase family 10 AMD11_RS21905 PF07690 Major Facilitator Superfamily AMD11_RS21910 PF00593 TonB dependent receptor AMD11_RS21910 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS21915 PF13347 MFS/sugar transport protein AMD11_RS21920 PF04616 Glycosyl hydrolases family 43 AMD11_RS21925 PF08212 Lipocalin-like domain AMD11_RS21930 PF06877 Regulator of ribonuclease activity B AMD11_RS21950 PF04325 Protein of unknown function (DUF465) AMD11_RS21955 PF00107 Zinc-binding dehydrogenase AMD11_RS21955 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS21960 PF01553 Acyltransferase AMD11_RS21970 PF00356 Bacterial regulatory proteins, lacI family AMD11_RS21970 PF13377 Periplasmic binding protein-like domain AMD11_RS21975 PF13620 Carboxypeptidase regulatory-like domain AMD11_RS21990 PF04820 Tryptophan halogenase AMD11_RS21995 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD11_RS22000 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMD11_RS22005 PF04337 Protein of unknown function, DUF480 AMD11_RS22010 PF14094 AMD11_RS22010 AMD11_RS22015 PF13302 Acetyltransferase (GNAT) domain AMD11_RS22020 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS22020 PF13361 UvrD-like helicase C-terminal domain AMD11_RS22025 PF00265 Thymidine kinase AMD11_RS22030 PF00512 His Kinase A (phospho-acceptor) domain AMD11_RS22030 PF01590 GAF domain AMD11_RS22030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD11_RS22035 PF04349 Periplasmic glucan biosynthesis protein, MdoG AMD11_RS22040 PF14315 AMD11_RS22040 AMD11_RS22045 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD11_RS22045 PF06827 Zinc finger found in FPG and IleRS AMD11_RS22045 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD11_RS22080 PF03594 AMD11_RS22080 AMD11_RS22085 PF00360 Phytochrome region AMD11_RS22085 PF01590 GAF domain AMD11_RS22085 PF08446 PAS fold AMD11_RS22085 PF08448 PAS fold AMD11_RS22090 PF01126 Heme oxygenase AMD11_RS22095 PF07690 Major Facilitator Superfamily AMD11_RS22100 PF01263 Aldose 1-epimerase AMD11_RS22100 PF01471 Putative peptidoglycan binding domain AMD11_RS22100 PF13406 Transglycosylase SLT domain AMD11_RS22115 PF01925 AMD11_RS22115 AMD11_RS22120 PF13555 P-loop containing region of AAA domain AMD11_RS22120 PF13558 Putative exonuclease SbcCD, C subunit AMD11_RS22125 PF13835 AMD11_RS22125 AMD11_RS22130 PF11855 AMD11_RS22130 AMD11_RS22135 PF01227 GTP cyclohydrolase I AMD11_RS22140 PF12802 MarR family AMD11_RS22145 PF07869 AMD11_RS22145 AMD11_RS22150 PF13437 HlyD family secretion protein AMD11_RS22150 PF13533 Biotin-lipoyl like AMD11_RS22155 PF02321 Outer membrane efflux protein AMD11_RS22160 PF04632 AMD11_RS22160 AMD11_RS22165 PF00083 Sugar (and other) transporter AMD11_RS22170 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMD11_RS22175 PF13091 PLD-like domain AMD11_RS22190 PF05016 Plasmid stabilisation system protein AMD11_RS22195 PF03869 Arc-like DNA binding domain AMD11_RS22200 PF01850 PIN domain AMD11_RS22205 PF00756 Putative esterase AMD11_RS22210 PF09722 AMD11_RS22210 AMD11_RS22225 PF00849 RNA pseudouridylate synthase AMD11_RS22235 PF01527 Transposase AMD11_RS22245 PF13333 AMD11_RS22245 AMD11_RS22250 PF07080 Protein of unknown function (DUF1348) AMD11_RS22255 PF01609 Transposase DDE domain AMD11_RS22260 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMD11_RS22260 PF00364 Biotin-requiring enzyme AMD11_RS22260 PF02626 Allophanate hydrolase subunit 2 AMD11_RS22260 PF02682 Allophanate hydrolase subunit 1 AMD11_RS22260 PF02785 Biotin carboxylase C-terminal domain AMD11_RS22260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD11_RS22265 PF01425 Amidase AMD11_RS22270 PF01609 Transposase DDE domain AMD11_RS22275 PF07080 Protein of unknown function (DUF1348) AMD11_RS22285 PF05299 M61 glycyl aminopeptidase AMD11_RS22290 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD11_RS22295 PF13538 UvrD-like helicase C-terminal domain AMD11_RS22295 PF13604 AAA domain AMD11_RS22300 PF00580 UvrD/REP helicase N-terminal domain AMD11_RS22300 PF12705 PD-(D/E)XK nuclease superfamily AMD11_RS22300 PF13361 UvrD-like helicase C-terminal domain AMD11_RS22305 PF04257 Exodeoxyribonuclease V, gamma subunit AMD11_RS22320 PF00005 ABC transporter AMD11_RS22325 PF02405 AMD11_RS22325 AMD11_RS22330 PF02470 AMD11_RS22330 AMD11_RS22335 PF05494 Toluene tolerance, Ttg2 AMD11_RS22340 PF13466 STAS domain AMD11_RS22345 PF04333 AMD11_RS22345 AMD11_RS22350 PF14534 Domain of unknown function (DUF4440) AMD11_RS22355 PF00255 Glutathione peroxidase AMD11_RS22365 PF02646 AMD11_RS22365 AMD11_RS22370 PF08240 Alcohol dehydrogenase GroES-like domain AMD11_RS22370 PF13602 Zinc-binding dehydrogenase AMD11_RS22375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD11_RS22375 PF03466 LysR substrate binding domain AMD11_RS22385 PF13410 Glutathione S-transferase, C-terminal domain AMD11_RS22385 PF13417 Glutathione S-transferase, N-terminal domain AMD11_RS22395 PF13520 Amino acid permease AMD11_RS22400 PF07971 Glycosyl hydrolase family 92 AMD11_RS22405 PF10947 AMD11_RS22405 AMD11_RS22410 PF00990 GGDEF domain AMD11_RS22410 PF08448 PAS fold AMD11_RS22415 PF05651 AMD11_RS22415 AMD11_RS22415 PF13556 PucR C-terminal helix-turn-helix domain AMD11_RS22420 PF02595 Glycerate kinase family AMD11_RS22425 PF07690 Major Facilitator Superfamily AMD11_RS22430 PF01244 Membrane dipeptidase (Peptidase family M19) AMD11_RS22440 PF10672 S-adenosylmethionine-dependent methyltransferase AMD11_RS22445 PF03741 AMD11_RS22445 AMD11_RS22450 PF01694 Rhomboid family AMD11_RS22455 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD11_RS22460 PF00593 TonB dependent receptor AMD11_RS22460 PF07715 TonB-dependent Receptor Plug Domain AMD11_RS22465 PF01569 PAP2 superfamily AMD11_RS22470 PF01926 50S ribosome-binding GTPase AMD11_RS22470 PF10396 GTP-binding protein TrmE N-terminus AMD11_RS22470 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AMD11_RS22475 PF00656 Caspase domain AMD11_RS22475 PF01522 Polysaccharide deacetylase AMD11_RS22475 PF13424 Tetratricopeptide repeat AMD11_RS22485 PF02096 60Kd inner membrane protein AMD11_RS22485 PF14849 YidC periplasmic domain AMD11_RS22490 PF00825 Ribonuclease P AMD11_RS22495 PF00468 Ribosomal protein L34