AMD11_RS00045 SM00433 TopoisomeraseII AMD11_RS00185 SM00028 Tetratricopeptide repeats AMD11_RS00470 SM00382 ATPases associated with a variety of cellular activities AMD11_RS00470 SM00760 Bacterial dnaA protein helix-turn-helix domain AMD11_RS00475 SM00480 DNA polymerase III beta subunit AMD11_RS00485 SM00387 Histidine kinase-like ATPases AMD11_RS00485 SM00433 TopoisomeraseII AMD11_RS00500 SM00028 Tetratricopeptide repeats AMD11_RS00535 SM00155 Phospholipase D. Active site motifs. AMD11_RS00550 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD11_RS00580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD11_RS00580 SM00245 tail specific protease AMD11_RS00620 SM00829 Enoylreductase AMD11_RS00745 SM00382 ATPases associated with a variety of cellular activities AMD11_RS00855 SM00487 DEAD-like helicases superfamily AMD11_RS00855 SM00490 helicase superfamily c-terminal domain AMD11_RS00875 SM00822 AMD11_RS00875 AMD11_RS00880 SM00822 AMD11_RS00880 AMD11_RS01135 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AMD11_RS01160 SM00421 helix_turn_helix, Lux Regulon AMD11_RS01160 SM00448 cheY-homologous receiver domain AMD11_RS01180 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS01260 SM00642 Alpha-amylase domain AMD11_RS01265 SM00642 Alpha-amylase domain AMD11_RS01270 SM00642 Alpha-amylase domain AMD11_RS01320 SM00354 helix_turn _helix lactose operon repressor AMD11_RS01360 SM00344 helix_turn_helix ASNC type AMD11_RS01380 SM00382 ATPases associated with a variety of cellular activities AMD11_RS01395 SM00382 ATPases associated with a variety of cellular activities AMD11_RS01430 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS01460 SM00855 Phosphoglycerate mutase family AMD11_RS01465 SM00867 YceI-like domain AMD11_RS01470 SM00155 Phospholipase D. Active site motifs. AMD11_RS01480 SM00563 Phosphate acyltransferases AMD11_RS01495 SM00028 Tetratricopeptide repeats AMD11_RS01505 SM00829 Enoylreductase AMD11_RS01520 SM01230 AMD11_RS01520 AMD11_RS01525 SM00938 Nitrogen regulatory protein P-II AMD11_RS01535 SM00387 Histidine kinase-like ATPases AMD11_RS01535 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS01540 SM00382 ATPases associated with a variety of cellular activities AMD11_RS01540 SM00448 cheY-homologous receiver domain AMD11_RS01600 SM00450 Rhodanese Homology Domain AMD11_RS01625 SM00387 Histidine kinase-like ATPases AMD11_RS01625 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS01630 SM00382 ATPases associated with a variety of cellular activities AMD11_RS01630 SM00448 cheY-homologous receiver domain AMD11_RS01740 SM00563 Phosphate acyltransferases AMD11_RS01775 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS01800 SM00100 Cyclic nucleotide-monophosphate binding domain AMD11_RS01800 SM00267 diguanylate cyclase AMD11_RS01825 SM00878 Biotin carboxylase C-terminal domain AMD11_RS01850 SM00953 AMD11_RS01850 AMD11_RS01890 SM00833 Cobalamin synthesis protein cobW C-terminal domain AMD11_RS01920 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD11_RS01955 SM00829 Enoylreductase AMD11_RS01985 SM00487 DEAD-like helicases superfamily AMD11_RS01985 SM00490 helicase superfamily c-terminal domain AMD11_RS01985 SM00847 Helicase associated domain (HA2) Add an annotation AMD11_RS02120 SM00422 helix_turn_helix, mercury resistance AMD11_RS02155 SM00448 cheY-homologous receiver domain AMD11_RS02155 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS02160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS02160 SM00387 Histidine kinase-like ATPases AMD11_RS02160 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS02305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD11_RS02310 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD11_RS02330 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS02360 SM00420 helix_turn_helix, Deoxyribose operon repressor AMD11_RS02360 SM01134 AMD11_RS02360 AMD11_RS02375 SM00882 Coenzyme A transferase AMD11_RS02380 SM00882 Coenzyme A transferase AMD11_RS02400 SM00998 Adenylosuccinate lyase C-terminus AMD11_RS02420 SM00346 helix_turn_helix isocitrate lyase regulation AMD11_RS02425 SM00090 RIO-like kinase AMD11_RS02440 SM01228 AMD11_RS02440 AMD11_RS02495 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD11_RS02495 SM00876 Biotin and Thiamin Synthesis associated domain AMD11_RS02515 SM00369 Leucine-rich repeats, typical (most populated) subfamily AMD11_RS02610 SM00382 ATPases associated with a variety of cellular activities AMD11_RS02670 SM00267 diguanylate cyclase AMD11_RS02680 SM00642 Alpha-amylase domain AMD11_RS02685 SM00642 Alpha-amylase domain AMD11_RS02695 SM00642 Alpha-amylase domain AMD11_RS02705 SM00642 Alpha-amylase domain AMD11_RS02755 SM00822 AMD11_RS02755 AMD11_RS02765 SM00487 DEAD-like helicases superfamily AMD11_RS02765 SM00490 helicase superfamily c-terminal domain AMD11_RS02775 SM00326 Src homology 3 domains AMD11_RS02780 SM00861 Transketolase, pyrimidine binding domain AMD11_RS02790 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AMD11_RS02810 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD11_RS02905 SM00271 DnaJ molecular chaperone homology domain AMD11_RS02925 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMD11_RS02945 SM00903 Flavin reductase like domain AMD11_RS02965 SM00100 Cyclic nucleotide-monophosphate binding domain AMD11_RS02965 SM00419 helix_turn_helix, cAMP Regulatory protein AMD11_RS03020 SM00387 Histidine kinase-like ATPases AMD11_RS03020 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS03020 SM00448 cheY-homologous receiver domain AMD11_RS03025 SM00052 Putative diguanylate phosphodiesterase AMD11_RS03025 SM00267 diguanylate cyclase AMD11_RS03025 SM00448 cheY-homologous receiver domain AMD11_RS03090 SM00563 Phosphate acyltransferases AMD11_RS03115 SM01209 AMD11_RS03115 AMD11_RS03115 SM01210 AMD11_RS03115 AMD11_RS03125 SM00798 AICARFT/IMPCHase bienzyme AMD11_RS03125 SM00851 MGS-like domain AMD11_RS03140 SM00195 Dual specificity phosphatase, catalytic domain AMD11_RS03160 SM00563 Phosphate acyltransferases AMD11_RS03185 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS03210 SM00878 Biotin carboxylase C-terminal domain AMD11_RS03240 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS03250 SM00234 in StAR and phosphatidylcholine transfer protein AMD11_RS03270 SM00883 Chaperonin 10 Kd subunit AMD11_RS03330 SM00944 Pro-kumamolisin, activation domain AMD11_RS03345 SM00867 YceI-like domain AMD11_RS03400 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD11_RS03410 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD11_RS03410 SM00895 AMD11_RS03410 AMD11_RS03430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS03430 SM00331 Sigma factor PP2C-like phosphatases AMD11_RS03470 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS03535 SM00267 diguanylate cyclase AMD11_RS03565 SM00062 Bacterial periplasmic substrate-binding proteins AMD11_RS03605 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD11_RS03605 SM01232 AMD11_RS03605 AMD11_RS03620 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS03630 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS03630 SM00091 PAS domain AMD11_RS03630 SM00267 diguanylate cyclase AMD11_RS03635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS03635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS03635 SM01049 AMD11_RS03635 AMD11_RS03640 SM00637 AMD11_RS03640 AMD11_RS03655 SM00267 diguanylate cyclase AMD11_RS03685 SM00448 cheY-homologous receiver domain AMD11_RS03685 SM00850 LytTr DNA-binding domain AMD11_RS03765 SM00382 ATPases associated with a variety of cellular activities AMD11_RS03765 SM01086 C-terminal, D2-small domain, of ClpB protein AMD11_RS03795 SM00267 diguanylate cyclase AMD11_RS03800 SM01263 AMD11_RS03800 AMD11_RS03820 SM00564 beta-propeller repeat AMD11_RS03825 SM00062 Bacterial periplasmic substrate-binding proteins AMD11_RS03825 SM00248 ankyrin repeats AMD11_RS03840 SM00829 Enoylreductase AMD11_RS03850 SM00382 ATPases associated with a variety of cellular activities AMD11_RS03860 SM00268 Actin AMD11_RS03885 SM00710 Parallel beta-helix repeats AMD11_RS03905 SM00936 Penicillin-binding protein 5, C-terminal domain AMD11_RS03925 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD11_RS03930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD11_RS03930 SM00245 tail specific protease AMD11_RS03985 SM01350 AMD11_RS03985 AMD11_RS03995 SM00749 bacterial OsmY and nodulation domain AMD11_RS04000 SM00387 Histidine kinase-like ATPases AMD11_RS04000 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS04005 SM00448 cheY-homologous receiver domain AMD11_RS04010 SM00387 Histidine kinase-like ATPases AMD11_RS04010 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS04010 SM00448 cheY-homologous receiver domain AMD11_RS04040 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD11_RS04065 SM00382 ATPases associated with a variety of cellular activities AMD11_RS04135 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD11_RS04135 SM00866 AMD11_RS04135 AMD11_RS04145 SM00354 helix_turn _helix lactose operon repressor AMD11_RS04210 SM00849 Metallo-beta-lactamase superfamily AMD11_RS04215 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS04225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS04225 SM00387 Histidine kinase-like ATPases AMD11_RS04225 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS04230 SM00448 cheY-homologous receiver domain AMD11_RS04230 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS04250 SM00829 Enoylreductase AMD11_RS04270 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD11_RS04290 SM00382 ATPases associated with a variety of cellular activities AMD11_RS04350 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD11_RS04380 SM00387 Histidine kinase-like ATPases AMD11_RS04380 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS04385 SM00448 cheY-homologous receiver domain AMD11_RS04385 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS04495 SM00842 Cell division protein FtsA AMD11_RS04500 SM00864 Tubulin/FtsZ family, GTPase domain AMD11_RS04500 SM00865 Tubulin/FtsZ family, C-terminal domain AMD11_RS04520 SM00957 SecA DEAD-like domain AMD11_RS04520 SM00958 SecA preprotein cross-linking domain AMD11_RS04545 SM00829 Enoylreductase AMD11_RS04550 SM00944 Pro-kumamolisin, activation domain AMD11_RS04565 SM00642 Alpha-amylase domain AMD11_RS04600 SM00996 S-adenosyl-L-homocysteine hydrolase AMD11_RS04600 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD11_RS04715 SM00382 ATPases associated with a variety of cellular activities AMD11_RS04735 SM00382 ATPases associated with a variety of cellular activities AMD11_RS04745 SM00448 cheY-homologous receiver domain AMD11_RS04745 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS04750 SM00387 Histidine kinase-like ATPases AMD11_RS04750 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS04800 SM00382 ATPases associated with a variety of cellular activities AMD11_RS04810 SM00382 ATPases associated with a variety of cellular activities AMD11_RS04870 SM00382 ATPases associated with a variety of cellular activities AMD11_RS04885 SM00650 Ribosomal RNA adenine dimethylases AMD11_RS04950 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD11_RS04950 SM00895 AMD11_RS04950 AMD11_RS04985 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD11_RS05060 SM00448 cheY-homologous receiver domain AMD11_RS05065 SM00387 Histidine kinase-like ATPases AMD11_RS05065 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS05065 SM00448 cheY-homologous receiver domain AMD11_RS05070 SM00421 helix_turn_helix, Lux Regulon AMD11_RS05135 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD11_RS05135 SM00475 5'-3' exonuclease AMD11_RS05165 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMD11_RS05165 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMD11_RS05280 SM00852 Probable molybdopterin binding domain AMD11_RS05285 SM00028 Tetratricopeptide repeats AMD11_RS05290 SM00937 AMD11_RS05290 AMD11_RS05300 SM00028 Tetratricopeptide repeats AMD11_RS05320 SM01400 AMD11_RS05320 AMD11_RS05370 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMD11_RS05370 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD11_RS05375 SM00649 Ribosomal protein L11/L12 AMD11_RS05400 SM00663 RNA polymerase I subunit A N-terminus AMD11_RS05415 SM00838 Elongation factor G C-terminus AMD11_RS05415 SM00889 Elongation factor G, domain IV AMD11_RS05425 SM01403 AMD11_RS05425 AMD11_RS05445 SM01382 AMD11_RS05445 AMD11_RS05445 SM01383 AMD11_RS05445 AMD11_RS05460 SM00322 K homology RNA-binding domain AMD11_RS05480 SM01374 AMD11_RS05480 AMD11_RS05485 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD11_RS05545 SM00363 S4 RNA-binding domain AMD11_RS05545 SM01390 AMD11_RS05545 AMD11_RS05550 SM00662 RNA polymerases D AMD11_RS05595 SM00838 Elongation factor G C-terminus AMD11_RS05625 SM00829 Enoylreductase AMD11_RS05670 SM00382 ATPases associated with a variety of cellular activities AMD11_RS05680 SM00829 Enoylreductase AMD11_RS05710 SM00855 Phosphoglycerate mutase family AMD11_RS05760 SM00014 Acid phosphatase homologues AMD11_RS05780 SM00091 PAS domain AMD11_RS05780 SM00387 Histidine kinase-like ATPases AMD11_RS05780 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS05785 SM00448 cheY-homologous receiver domain AMD11_RS05785 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS05805 SM01329 AMD11_RS05805 AMD11_RS05950 SM00387 Histidine kinase-like ATPases AMD11_RS05970 SM00382 ATPases associated with a variety of cellular activities AMD11_RS05970 SM00994 ClpX C4-type zinc finger AMD11_RS05970 SM01086 C-terminal, D2-small domain, of ClpB protein AMD11_RS05975 SM00382 ATPases associated with a variety of cellular activities AMD11_RS05975 SM00464 Found in ATP-dependent protease La (LON) AMD11_RS05980 SM00411 bacterial (prokaryotic) histone like domain AMD11_RS06005 SM00257 Lysin motif AMD11_RS06010 SM00849 Metallo-beta-lactamase superfamily AMD11_RS06025 SM00479 AMD11_RS06025 AMD11_RS06030 SM00331 Sigma factor PP2C-like phosphatases AMD11_RS06030 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD11_RS06055 SM00849 Metallo-beta-lactamase superfamily AMD11_RS06060 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD11_RS06130 SM00382 ATPases associated with a variety of cellular activities AMD11_RS06140 SM00493 AMD11_RS06140 AMD11_RS06155 SM00460 Transglutaminase/protease-like homologues AMD11_RS06165 SM00382 ATPases associated with a variety of cellular activities AMD11_RS06210 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD11_RS06215 SM00822 AMD11_RS06215 AMD11_RS06225 SM00825 Beta-ketoacyl synthase AMD11_RS06260 SM00382 ATPases associated with a variety of cellular activities AMD11_RS06300 SM01359 AMD11_RS06300 AMD11_RS06300 SM01360 AMD11_RS06300 AMD11_RS06335 SM00271 DnaJ molecular chaperone homology domain AMD11_RS06340 SM00448 cheY-homologous receiver domain AMD11_RS06345 SM00244 prohibitin homologues AMD11_RS06350 SM00244 prohibitin homologues AMD11_RS06355 SM01321 AMD11_RS06355 AMD11_RS06360 SM00788 Adenylosuccinate synthetase AMD11_RS06375 SM00822 AMD11_RS06375 AMD11_RS06430 SM00220 Serine/Threonine protein kinases, catalytic domain AMD11_RS06445 SM00855 Phosphoglycerate mutase family AMD11_RS06500 SM00052 Putative diguanylate phosphodiesterase AMD11_RS06505 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD11_RS06515 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD11_RS06520 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD11_RS06535 SM00974 AMD11_RS06535 AMD11_RS06555 SM00966 SpoVT / AbrB like domain AMD11_RS06575 SM00481 DNA polymerase alpha chain like domain AMD11_RS06585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD11_RS06620 SM00091 PAS domain AMD11_RS06620 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS06635 SM01060 AMD11_RS06635 AMD11_RS06685 SM00448 cheY-homologous receiver domain AMD11_RS06685 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS06690 SM00387 Histidine kinase-like ATPases AMD11_RS06690 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS06730 SM00421 helix_turn_helix, Lux Regulon AMD11_RS06730 SM00448 cheY-homologous receiver domain AMD11_RS06745 SM00478 endonuclease III AMD11_RS06765 SM00244 prohibitin homologues AMD11_RS06850 SM00904 Riboflavin kinase AMD11_RS06895 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD11_RS06900 SM00382 ATPases associated with a variety of cellular activities AMD11_RS06910 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS06915 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS06950 SM00387 Histidine kinase-like ATPases AMD11_RS06950 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS06955 SM00387 Histidine kinase-like ATPases AMD11_RS06955 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS06955 SM00448 cheY-homologous receiver domain AMD11_RS06980 SM00387 Histidine kinase-like ATPases AMD11_RS06980 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS06980 SM00448 cheY-homologous receiver domain AMD11_RS06990 SM00138 Methyltransferase, chemotaxis proteins AMD11_RS06995 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS06995 SM00387 Histidine kinase-like ATPases AMD11_RS06995 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS06995 SM00448 cheY-homologous receiver domain AMD11_RS07000 SM00091 PAS domain AMD11_RS07000 SM00387 Histidine kinase-like ATPases AMD11_RS07000 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS07005 SM00448 cheY-homologous receiver domain AMD11_RS07015 SM00813 Alpha-L-arabinofuranosidase C-terminus AMD11_RS07035 SM00382 ATPases associated with a variety of cellular activities AMD11_RS07035 SM00962 SRP54-type protein, GTPase domain AMD11_RS07035 SM00963 SRP54-type protein, helical bundle domain AMD11_RS07105 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMD11_RS07105 SM00534 ATPase domain of DNA mismatch repair MUTS family AMD11_RS07125 SM00812 Alpha-L-fucosidase AMD11_RS07150 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS07200 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD11_RS07205 SM00838 Elongation factor G C-terminus AMD11_RS07220 SM00358 Double-stranded RNA binding motif AMD11_RS07220 SM00535 Ribonuclease III family AMD11_RS07235 SM00448 cheY-homologous receiver domain AMD11_RS07245 SM01118 AMD11_RS07245 AMD11_RS07280 SM00357 Cold shock protein domain AMD11_RS07295 SM00487 DEAD-like helicases superfamily AMD11_RS07295 SM00490 helicase superfamily c-terminal domain AMD11_RS07325 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS07325 SM00267 diguanylate cyclase AMD11_RS07345 SM00869 Autotransporter beta-domain AMD11_RS07350 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD11_RS07355 SM00671 Sel1-like repeats. AMD11_RS07355 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD11_RS07555 SM00382 ATPases associated with a variety of cellular activities AMD11_RS07640 SM00481 DNA polymerase alpha chain like domain AMD11_RS07680 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD11_RS07710 SM00267 diguanylate cyclase AMD11_RS07735 SM00972 Spore Coat Protein U domain AMD11_RS07750 SM00972 Spore Coat Protein U domain AMD11_RS07760 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD11_RS07780 SM01172 AMD11_RS07780 AMD11_RS07785 SM00710 Parallel beta-helix repeats AMD11_RS07785 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AMD11_RS07820 SM00434 DNA Topoisomerase IV AMD11_RS07825 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS07830 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD11_RS07855 SM01217 AMD11_RS07855 AMD11_RS07860 SM00631 AMD11_RS07860 AMD11_RS07890 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD11_RS07910 SM00382 ATPases associated with a variety of cellular activities AMD11_RS07925 SM00947 Carbonic anhydrase AMD11_RS07940 SM00357 Cold shock protein domain AMD11_RS08055 SM00267 diguanylate cyclase AMD11_RS08065 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS08065 SM00267 diguanylate cyclase AMD11_RS08080 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS08095 SM00528 Domain in histone-like proteins of HNS family AMD11_RS08120 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS08215 SM00271 DnaJ molecular chaperone homology domain AMD11_RS08255 SM00382 ATPases associated with a variety of cellular activities AMD11_RS08280 SM00861 Transketolase, pyrimidine binding domain AMD11_RS08290 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD11_RS08310 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD11_RS08310 SM01091 Transporter associated domain AMD11_RS08340 SM00382 ATPases associated with a variety of cellular activities AMD11_RS08345 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD11_RS08360 SM00984 UDP binding domain AMD11_RS08380 SM00354 helix_turn _helix lactose operon repressor AMD11_RS08400 SM01018 B12 binding domain AMD11_RS08410 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMD11_RS08430 SM00316 Ribosomal protein S1-like RNA-binding domain AMD11_RS08430 SM00357 Cold shock protein domain AMD11_RS08430 SM00955 AMD11_RS08430 AMD11_RS08440 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD11_RS08445 SM00267 diguanylate cyclase AMD11_RS08450 SM00479 AMD11_RS08450 AMD11_RS08465 SM00382 ATPases associated with a variety of cellular activities AMD11_RS08500 SM00947 Carbonic anhydrase AMD11_RS08510 SM00478 endonuclease III AMD11_RS08535 SM00450 Rhodanese Homology Domain AMD11_RS08545 SM00644 AMD11_RS08545 AMD11_RS08565 SM00382 ATPases associated with a variety of cellular activities AMD11_RS08570 SM00981 AMD11_RS08570 AMD11_RS08600 SM00479 AMD11_RS08600 AMD11_RS08625 SM00947 Carbonic anhydrase AMD11_RS08670 SM00421 helix_turn_helix, Lux Regulon AMD11_RS08670 SM00448 cheY-homologous receiver domain AMD11_RS08730 SM00968 SMC proteins Flexible Hinge Domain AMD11_RS08735 SM00771 ZipA, C-terminal domain (FtsZ-binding) AMD11_RS08750 SM00292 breast cancer carboxy-terminal domain AMD11_RS08750 SM00532 Ligase N family AMD11_RS08770 SM00434 DNA Topoisomerase IV AMD11_RS08815 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD11_RS08815 SM00866 AMD11_RS08815 AMD11_RS08840 SM00240 Forkhead associated domain AMD11_RS08860 SM00830 Chorismate mutase type II AMD11_RS08945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS08945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS08955 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD11_RS08970 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS08970 SM00091 PAS domain AMD11_RS08970 SM00387 Histidine kinase-like ATPases AMD11_RS08970 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS08970 SM00448 cheY-homologous receiver domain AMD11_RS08975 SM00448 cheY-homologous receiver domain AMD11_RS08980 SM00382 ATPases associated with a variety of cellular activities AMD11_RS08985 SM00091 PAS domain AMD11_RS08985 SM00387 Histidine kinase-like ATPases AMD11_RS08985 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS08985 SM00448 cheY-homologous receiver domain AMD11_RS09140 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD11_RS09175 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD11_RS09175 SM01091 Transporter associated domain AMD11_RS09200 SM00387 Histidine kinase-like ATPases AMD11_RS09200 SM00433 TopoisomeraseII AMD11_RS09225 SM01192 AMD11_RS09225 AMD11_RS09225 SM01193 AMD11_RS09225 AMD11_RS09250 SM00463 Small MutS-related domain AMD11_RS09270 SM00257 Lysin motif AMD11_RS09280 SM01103 AMD11_RS09280 AMD11_RS09290 SM00382 ATPases associated with a variety of cellular activities AMD11_RS09330 SM00382 ATPases associated with a variety of cellular activities AMD11_RS09340 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD11_RS09355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS09355 SM00091 PAS domain AMD11_RS09355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS09410 SM00670 Large family of predicted nucleotide-binding domains AMD11_RS09430 SM01130 AMD11_RS09430 AMD11_RS09455 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD11_RS09500 SM00758 AMD11_RS09500 AMD11_RS09530 SM00646 AMD11_RS09530 AMD11_RS09600 SM00052 Putative diguanylate phosphodiesterase AMD11_RS09600 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS09600 SM00267 diguanylate cyclase AMD11_RS09610 SM00448 cheY-homologous receiver domain AMD11_RS09615 SM00387 Histidine kinase-like ATPases AMD11_RS09625 SM00014 Acid phosphatase homologues AMD11_RS09700 SM00912 haemagglutination activity domain AMD11_RS09745 SM00100 Cyclic nucleotide-monophosphate binding domain AMD11_RS09745 SM00419 helix_turn_helix, cAMP Regulatory protein AMD11_RS09820 SM01007 Class II Aldolase and Adducin N-terminal domain AMD11_RS09865 SM00841 Elongation factor P, C-terminal AMD11_RS09865 SM01185 AMD11_RS09865 AMD11_RS09870 SM00822 AMD11_RS09870 AMD11_RS09890 SM00899 AMD11_RS09890 AMD11_RS09925 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMD11_RS09935 SM00851 MGS-like domain AMD11_RS09935 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD11_RS09995 SM00850 LytTr DNA-binding domain AMD11_RS10000 SM00937 AMD11_RS10000 AMD11_RS10010 SM00448 cheY-homologous receiver domain AMD11_RS10010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD11_RS10015 SM00073 Histidine Phosphotransfer domain AMD11_RS10015 SM00387 Histidine kinase-like ATPases AMD11_RS10015 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS10015 SM00448 cheY-homologous receiver domain AMD11_RS10040 SM00966 SpoVT / AbrB like domain AMD11_RS10060 SM00052 Putative diguanylate phosphodiesterase AMD11_RS10060 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS10060 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS10060 SM00091 PAS domain AMD11_RS10060 SM00267 diguanylate cyclase AMD11_RS10065 SM00448 cheY-homologous receiver domain AMD11_RS10075 SM00138 Methyltransferase, chemotaxis proteins AMD11_RS10080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS10085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS10090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS10100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS10105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS10110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS10115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS10135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS10135 SM01049 AMD11_RS10135 AMD11_RS10145 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS10150 SM00073 Histidine Phosphotransfer domain AMD11_RS10150 SM00260 Two component signalling adaptor domain AMD11_RS10150 SM00387 Histidine kinase-like ATPases AMD11_RS10150 SM01231 AMD11_RS10150 AMD11_RS10155 SM00448 cheY-homologous receiver domain AMD11_RS10165 SM00260 Two component signalling adaptor domain AMD11_RS10195 SM00220 Serine/Threonine protein kinases, catalytic domain AMD11_RS10255 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS10280 SM00073 Histidine Phosphotransfer domain AMD11_RS10280 SM00260 Two component signalling adaptor domain AMD11_RS10280 SM00387 Histidine kinase-like ATPases AMD11_RS10280 SM01231 AMD11_RS10280 AMD11_RS10290 SM00448 cheY-homologous receiver domain AMD11_RS10305 SM00382 ATPases associated with a variety of cellular activities AMD11_RS10305 SM00962 SRP54-type protein, GTPase domain AMD11_RS10320 SM00052 Putative diguanylate phosphodiesterase AMD11_RS10320 SM00267 diguanylate cyclase AMD11_RS10325 SM00267 diguanylate cyclase AMD11_RS10335 SM00267 diguanylate cyclase AMD11_RS10385 SM00382 ATPases associated with a variety of cellular activities AMD11_RS10435 SM00822 AMD11_RS10435 AMD11_RS10460 SM00382 ATPases associated with a variety of cellular activities AMD11_RS10465 SM00448 cheY-homologous receiver domain AMD11_RS10475 SM00421 helix_turn_helix, Lux Regulon AMD11_RS10475 SM00448 cheY-homologous receiver domain AMD11_RS10515 SM00047 Lysozyme subfamily 2 AMD11_RS10560 SM00260 Two component signalling adaptor domain AMD11_RS10560 SM00448 cheY-homologous receiver domain AMD11_RS10565 SM00858 AMD11_RS10565 AMD11_RS10580 SM00387 Histidine kinase-like ATPases AMD11_RS10585 SM00052 Putative diguanylate phosphodiesterase AMD11_RS10585 SM00267 diguanylate cyclase AMD11_RS10585 SM00448 cheY-homologous receiver domain AMD11_RS10590 SM00091 PAS domain AMD11_RS10590 SM00387 Histidine kinase-like ATPases AMD11_RS10595 SM00052 Putative diguanylate phosphodiesterase AMD11_RS10595 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS10595 SM00091 PAS domain AMD11_RS10595 SM00267 diguanylate cyclase AMD11_RS10605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS10630 SM00382 ATPases associated with a variety of cellular activities AMD11_RS10630 SM01086 C-terminal, D2-small domain, of ClpB protein AMD11_RS10635 SM00316 Ribosomal protein S1-like RNA-binding domain AMD11_RS10655 SM00382 ATPases associated with a variety of cellular activities AMD11_RS10655 SM00843 AMD11_RS10655 AMD11_RS10675 SM00382 ATPases associated with a variety of cellular activities AMD11_RS10705 SM00562 AMD11_RS10705 AMD11_RS10715 SM00028 Tetratricopeptide repeats AMD11_RS10730 SM00564 beta-propeller repeat AMD11_RS10735 SM00382 ATPases associated with a variety of cellular activities AMD11_RS10740 SM00852 Probable molybdopterin binding domain AMD11_RS10745 SM00450 Rhodanese Homology Domain AMD11_RS10790 SM00852 Probable molybdopterin binding domain AMD11_RS10815 SM00529 Helix-turn-helix diphteria tox regulatory element AMD11_RS10825 SM00479 AMD11_RS10825 AMD11_RS10895 SM00316 Ribosomal protein S1-like RNA-binding domain AMD11_RS10895 SM00732 Likely ribonuclease with RNase H fold. AMD11_RS10900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS10900 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS10900 SM00091 PAS domain AMD11_RS10900 SM00387 Histidine kinase-like ATPases AMD11_RS10900 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS10900 SM00448 cheY-homologous receiver domain AMD11_RS10905 SM00448 cheY-homologous receiver domain AMD11_RS10990 SM00382 ATPases associated with a variety of cellular activities AMD11_RS11040 SM00382 ATPases associated with a variety of cellular activities AMD11_RS11050 SM00849 Metallo-beta-lactamase superfamily AMD11_RS11065 SM00382 ATPases associated with a variety of cellular activities AMD11_RS11080 SM00226 Low molecular weight phosphatase family AMD11_RS11090 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD11_RS11090 SM00465 GIY-YIG type nucleases (URI domain) AMD11_RS11120 SM00823 Phosphopantetheine attachment site AMD11_RS11155 SM00984 UDP binding domain AMD11_RS11175 SM00450 Rhodanese Homology Domain AMD11_RS11180 SM00421 helix_turn_helix, Lux Regulon AMD11_RS11180 SM00448 cheY-homologous receiver domain AMD11_RS11185 SM00316 Ribosomal protein S1-like RNA-binding domain AMD11_RS11190 SM00363 S4 RNA-binding domain AMD11_RS11230 SM01034 Sensors of blue-light using FAD AMD11_RS11340 SM00448 cheY-homologous receiver domain AMD11_RS11340 SM00850 LytTr DNA-binding domain AMD11_RS11360 SM00869 Autotransporter beta-domain AMD11_RS11380 SM00387 Histidine kinase-like ATPases AMD11_RS11380 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS11385 SM00421 helix_turn_helix, Lux Regulon AMD11_RS11385 SM00448 cheY-homologous receiver domain AMD11_RS11390 SM00869 Autotransporter beta-domain AMD11_RS11395 SM00052 Putative diguanylate phosphodiesterase AMD11_RS11420 SM00448 cheY-homologous receiver domain AMD11_RS11465 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS11470 SM00387 Histidine kinase-like ATPases AMD11_RS11475 SM00421 helix_turn_helix, Lux Regulon AMD11_RS11475 SM00448 cheY-homologous receiver domain AMD11_RS11480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS11520 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS11585 SM00966 SpoVT / AbrB like domain AMD11_RS11630 SM00736 Dystroglycan-type cadherin-like domains. AMD11_RS11650 SM00382 ATPases associated with a variety of cellular activities AMD11_RS11700 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD11_RS11700 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD11_RS11700 SM00493 AMD11_RS11700 AMD11_RS11820 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS11860 SM00487 DEAD-like helicases superfamily AMD11_RS12115 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD11_RS12115 SM01240 AMD11_RS12115 AMD11_RS12140 SM00822 AMD11_RS12140 AMD11_RS12150 SM00028 Tetratricopeptide repeats AMD11_RS12160 SM00411 bacterial (prokaryotic) histone like domain AMD11_RS12165 SM00316 Ribosomal protein S1-like RNA-binding domain AMD11_RS12240 SM00354 helix_turn _helix lactose operon repressor AMD11_RS12265 SM00363 S4 RNA-binding domain AMD11_RS12290 SM00382 ATPases associated with a variety of cellular activities AMD11_RS12340 SM00357 Cold shock protein domain AMD11_RS12345 SM00382 ATPases associated with a variety of cellular activities AMD11_RS12350 SM00382 ATPases associated with a variety of cellular activities AMD11_RS12380 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD11_RS12390 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD11_RS12405 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD11_RS12445 SM00840 AMD11_RS12445 AMD11_RS12470 SM01234 AMD11_RS12470 AMD11_RS12510 SM00849 Metallo-beta-lactamase superfamily AMD11_RS12565 SM00841 Elongation factor P, C-terminal AMD11_RS12565 SM01185 AMD11_RS12565 AMD11_RS12575 SM00052 Putative diguanylate phosphodiesterase AMD11_RS12575 SM00267 diguanylate cyclase AMD11_RS12575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS12610 SM00382 ATPases associated with a variety of cellular activities AMD11_RS12615 SM00487 DEAD-like helicases superfamily AMD11_RS12615 SM00490 helicase superfamily c-terminal domain AMD11_RS12640 SM00357 Cold shock protein domain AMD11_RS12645 SM01322 AMD11_RS12645 AMD11_RS12655 SM00052 Putative diguanylate phosphodiesterase AMD11_RS12655 SM00267 diguanylate cyclase AMD11_RS12670 SM00822 AMD11_RS12670 AMD11_RS12690 SM00853 MutL C terminal dimerisation domain AMD11_RS12690 SM01340 AMD11_RS12690 AMD11_RS12695 SM00646 AMD11_RS12695 AMD11_RS12730 SM00474 3'-5' exonuclease AMD11_RS12745 SM00528 Domain in histone-like proteins of HNS family AMD11_RS12830 SM00857 Resolvase, N terminal domain AMD11_RS12900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS12900 SM00267 diguanylate cyclase AMD11_RS12905 SM00260 Two component signalling adaptor domain AMD11_RS12910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS12910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS12920 SM00487 DEAD-like helicases superfamily AMD11_RS12920 SM00490 helicase superfamily c-terminal domain AMD11_RS12975 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD11_RS13000 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD11_RS13000 SM01091 Transporter associated domain AMD11_RS13035 SM00382 ATPases associated with a variety of cellular activities AMD11_RS13065 SM01230 AMD11_RS13065 AMD11_RS13075 SM01230 AMD11_RS13075 AMD11_RS13085 SM00267 diguanylate cyclase AMD11_RS13085 SM00448 cheY-homologous receiver domain AMD11_RS13135 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS13135 SM00091 PAS domain AMD11_RS13135 SM00387 Histidine kinase-like ATPases AMD11_RS13135 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS13135 SM00448 cheY-homologous receiver domain AMD11_RS13135 SM01079 AMD11_RS13135 AMD11_RS13140 SM00448 cheY-homologous receiver domain AMD11_RS13140 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD11_RS13170 SM00354 helix_turn _helix lactose operon repressor AMD11_RS13230 SM01323 AMD11_RS13230 AMD11_RS13245 SM00344 helix_turn_helix ASNC type AMD11_RS13325 SM00387 Histidine kinase-like ATPases AMD11_RS13370 SM00944 Pro-kumamolisin, activation domain AMD11_RS13420 SM01130 AMD11_RS13420 AMD11_RS13445 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS13450 SM00382 ATPases associated with a variety of cellular activities AMD11_RS13450 SM00962 SRP54-type protein, GTPase domain AMD11_RS13450 SM00963 SRP54-type protein, helical bundle domain AMD11_RS13455 SM00478 endonuclease III AMD11_RS13465 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS13465 SM00091 PAS domain AMD11_RS13465 SM00387 Histidine kinase-like ATPases AMD11_RS13465 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS13465 SM00448 cheY-homologous receiver domain AMD11_RS13480 SM00465 GIY-YIG type nucleases (URI domain) AMD11_RS13510 SM00507 HNH nucleases AMD11_RS13515 SM00861 Transketolase, pyrimidine binding domain AMD11_RS13540 SM00849 Metallo-beta-lactamase superfamily AMD11_RS13625 SM00422 helix_turn_helix, mercury resistance AMD11_RS13630 SM00411 bacterial (prokaryotic) histone like domain AMD11_RS13635 SM00873 B3/4 domain AMD11_RS13635 SM00874 tRNA synthetase B5 domain AMD11_RS13635 SM00896 Ferredoxin-fold anticodon binding domain AMD11_RS13660 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD11_RS13665 SM00354 helix_turn _helix lactose operon repressor AMD11_RS13670 SM00642 Alpha-amylase domain AMD11_RS13700 SM00642 Alpha-amylase domain AMD11_RS13745 SM00382 ATPases associated with a variety of cellular activities AMD11_RS13805 SM00487 DEAD-like helicases superfamily AMD11_RS13805 SM00490 helicase superfamily c-terminal domain AMD11_RS14055 SM01001 AIR carboxylase AMD11_RS14075 SM00316 Ribosomal protein S1-like RNA-binding domain AMD11_RS14075 SM00322 K homology RNA-binding domain AMD11_RS14080 SM01387 AMD11_RS14080 AMD11_RS14100 SM00316 Ribosomal protein S1-like RNA-binding domain AMD11_RS14100 SM00322 K homology RNA-binding domain AMD11_RS14150 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD11_RS14155 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD11_RS14200 SM00822 AMD11_RS14200 AMD11_RS14215 SM00052 Putative diguanylate phosphodiesterase AMD11_RS14215 SM00267 diguanylate cyclase AMD11_RS14215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS14290 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD11_RS14320 SM00257 Lysin motif AMD11_RS14350 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD11_RS14415 SM01160 AMD11_RS14415 AMD11_RS14470 SM00098 Alkaline phosphatase homologues AMD11_RS14475 SM00977 TilS substrate C-terminal domain AMD11_RS14490 SM01351 AMD11_RS14490 AMD11_RS14525 SM00316 Ribosomal protein S1-like RNA-binding domain AMD11_RS14660 SM00382 ATPases associated with a variety of cellular activities AMD11_RS14690 SM00448 cheY-homologous receiver domain AMD11_RS14690 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS14695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS14695 SM00387 Histidine kinase-like ATPases AMD11_RS14695 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS14730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS14730 SM00267 diguanylate cyclase AMD11_RS14735 SM00363 S4 RNA-binding domain AMD11_RS14740 SM00052 Putative diguanylate phosphodiesterase AMD11_RS14740 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS14740 SM00091 PAS domain AMD11_RS14740 SM00267 diguanylate cyclase AMD11_RS14745 SM00487 DEAD-like helicases superfamily AMD11_RS14745 SM00490 helicase superfamily c-terminal domain AMD11_RS14790 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS14790 SM00478 endonuclease III AMD11_RS14790 SM01009 AlkA N-terminal domain AMD11_RS14810 SM00829 Enoylreductase AMD11_RS14875 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS14945 SM00645 Papain family cysteine protease AMD11_RS14950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS14950 SM00387 Histidine kinase-like ATPases AMD11_RS14950 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS14955 SM00448 cheY-homologous receiver domain AMD11_RS14955 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS14970 SM00487 DEAD-like helicases superfamily AMD11_RS14970 SM00490 helicase superfamily c-terminal domain AMD11_RS14970 SM00982 AMD11_RS14970 AMD11_RS14970 SM01058 CarD-like/TRCF domain AMD11_RS15005 SM00073 Histidine Phosphotransfer domain AMD11_RS15005 SM00260 Two component signalling adaptor domain AMD11_RS15005 SM00387 Histidine kinase-like ATPases AMD11_RS15005 SM01231 AMD11_RS15005 AMD11_RS15010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS15010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS15015 SM00260 Two component signalling adaptor domain AMD11_RS15020 SM00052 Putative diguanylate phosphodiesterase AMD11_RS15020 SM00448 cheY-homologous receiver domain AMD11_RS15025 SM00138 Methyltransferase, chemotaxis proteins AMD11_RS15030 SM00448 cheY-homologous receiver domain AMD11_RS15035 SM00155 Phospholipase D. Active site motifs. AMD11_RS15050 SM00855 Phosphoglycerate mutase family AMD11_RS15100 SM00248 ankyrin repeats AMD11_RS15145 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD11_RS15150 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD11_RS15160 SM00829 Enoylreductase AMD11_RS15165 SM00267 diguanylate cyclase AMD11_RS15170 SM00487 DEAD-like helicases superfamily AMD11_RS15265 SM00732 Likely ribonuclease with RNase H fold. AMD11_RS15300 SM00382 ATPases associated with a variety of cellular activities AMD11_RS15315 SM00411 bacterial (prokaryotic) histone like domain AMD11_RS15345 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AMD11_RS15360 SM00382 ATPases associated with a variety of cellular activities AMD11_RS15390 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD11_RS15395 SM00671 Sel1-like repeats. AMD11_RS15425 SM00054 EF-hand, calcium binding motif AMD11_RS15515 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD11_RS15535 SM00382 ATPases associated with a variety of cellular activities AMD11_RS15580 SM00924 MgtE intracellular N domain AMD11_RS15610 SM00656 AMD11_RS15610 AMD11_RS15625 SM00421 helix_turn_helix, Lux Regulon AMD11_RS15650 SM00849 Metallo-beta-lactamase superfamily AMD11_RS15660 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD11_RS15680 SM00422 helix_turn_helix, mercury resistance AMD11_RS15820 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS15830 SM00387 Histidine kinase-like ATPases AMD11_RS15830 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS15830 SM00448 cheY-homologous receiver domain AMD11_RS15835 SM00387 Histidine kinase-like ATPases AMD11_RS15835 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS15835 SM00448 cheY-homologous receiver domain AMD11_RS15845 SM00387 Histidine kinase-like ATPases AMD11_RS15845 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS15845 SM00448 cheY-homologous receiver domain AMD11_RS15850 SM00867 YceI-like domain AMD11_RS15860 SM00867 YceI-like domain AMD11_RS15915 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD11_RS15945 SM00028 Tetratricopeptide repeats AMD11_RS16045 SM00812 Alpha-L-fucosidase AMD11_RS16050 SM00636 AMD11_RS16050 AMD11_RS16065 SM00758 AMD11_RS16065 AMD11_RS16065 SM01217 AMD11_RS16065 AMD11_RS16095 SM01149 AMD11_RS16095 AMD11_RS16155 SM00260 Two component signalling adaptor domain AMD11_RS16165 SM00073 Histidine Phosphotransfer domain AMD11_RS16165 SM00260 Two component signalling adaptor domain AMD11_RS16165 SM00387 Histidine kinase-like ATPases AMD11_RS16165 SM00448 cheY-homologous receiver domain AMD11_RS16165 SM01231 AMD11_RS16165 AMD11_RS16170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS16175 SM00260 Two component signalling adaptor domain AMD11_RS16180 SM00448 cheY-homologous receiver domain AMD11_RS16185 SM00448 cheY-homologous receiver domain AMD11_RS16210 SM00491 AMD11_RS16210 AMD11_RS16235 SM00954 Region found in RelA / SpoT proteins AMD11_RS16280 SM00382 ATPases associated with a variety of cellular activities AMD11_RS16280 SM00487 DEAD-like helicases superfamily AMD11_RS16280 SM00490 helicase superfamily c-terminal domain AMD11_RS16280 SM00847 Helicase associated domain (HA2) Add an annotation AMD11_RS16290 SM00341 Helicase and RNase D C-terminal AMD11_RS16290 SM00487 DEAD-like helicases superfamily AMD11_RS16290 SM00490 helicase superfamily c-terminal domain AMD11_RS16290 SM00956 AMD11_RS16290 AMD11_RS16300 SM00448 cheY-homologous receiver domain AMD11_RS16325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS16325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS16340 SM00448 cheY-homologous receiver domain AMD11_RS16345 SM00091 PAS domain AMD11_RS16345 SM00911 HWE histidine kinase AMD11_RS16400 SM00382 ATPases associated with a variety of cellular activities AMD11_RS16415 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD11_RS16450 SM00834 Putative regulatory protein AMD11_RS16490 SM00382 ATPases associated with a variety of cellular activities AMD11_RS16595 SM00855 Phosphoglycerate mutase family AMD11_RS16645 SM00382 ATPases associated with a variety of cellular activities AMD11_RS16645 SM01086 C-terminal, D2-small domain, of ClpB protein AMD11_RS16650 SM00382 ATPases associated with a variety of cellular activities AMD11_RS16660 SM00062 Bacterial periplasmic substrate-binding proteins AMD11_RS16735 SM00564 beta-propeller repeat AMD11_RS16740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS16845 SM01126 AMD11_RS16845 AMD11_RS16850 SM00881 CoA binding domain AMD11_RS16860 SM00387 Histidine kinase-like ATPases AMD11_RS16860 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS16865 SM00382 ATPases associated with a variety of cellular activities AMD11_RS16865 SM00448 cheY-homologous receiver domain AMD11_RS16930 SM00387 Histidine kinase-like ATPases AMD11_RS16930 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS16935 SM00448 cheY-homologous receiver domain AMD11_RS16935 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS16950 SM00642 Alpha-amylase domain AMD11_RS16955 SM00528 Domain in histone-like proteins of HNS family AMD11_RS16965 SM00318 Staphylococcal nuclease homologues AMD11_RS17030 SM00387 Histidine kinase-like ATPases AMD11_RS17030 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS17035 SM00448 cheY-homologous receiver domain AMD11_RS17050 SM01034 Sensors of blue-light using FAD AMD11_RS17100 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS17120 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS17120 SM00387 Histidine kinase-like ATPases AMD11_RS17145 SM00255 Toll - interleukin 1 - resistance AMD11_RS17160 SM00869 Autotransporter beta-domain AMD11_RS17215 SM00354 helix_turn _helix lactose operon repressor AMD11_RS17245 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD11_RS17355 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS17355 SM00387 Histidine kinase-like ATPases AMD11_RS17390 SM00506 Appr-1"-p processing enzyme AMD11_RS17430 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD11_RS17455 SM00849 Metallo-beta-lactamase superfamily AMD11_RS17470 SM00382 ATPases associated with a variety of cellular activities AMD11_RS17535 SM00861 Transketolase, pyrimidine binding domain AMD11_RS17550 SM00028 Tetratricopeptide repeats AMD11_RS17550 SM00327 von Willebrand factor (vWF) type A domain AMD11_RS17555 SM00327 von Willebrand factor (vWF) type A domain AMD11_RS17570 SM00382 ATPases associated with a variety of cellular activities AMD11_RS17575 SM00965 Secretin and TonB N terminus short domain AMD11_RS17625 SM00487 DEAD-like helicases superfamily AMD11_RS17625 SM00490 helicase superfamily c-terminal domain AMD11_RS17635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD11_RS17635 SM00954 Region found in RelA / SpoT proteins AMD11_RS17640 SM01409 AMD11_RS17640 AMD11_RS17645 SM00072 Guanylate kinase homologues. AMD11_RS17670 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD11_RS17695 SM01011 Aminopeptidase P, N-terminal domain AMD11_RS17765 SM00028 Tetratricopeptide repeats AMD11_RS17765 SM00382 ATPases associated with a variety of cellular activities AMD11_RS17765 SM00421 helix_turn_helix, Lux Regulon AMD11_RS17835 SM00464 Found in ATP-dependent protease La (LON) AMD11_RS17885 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS17890 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS17905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS17935 SM00917 LeuA allosteric (dimerisation) domain AMD11_RS17940 SM01329 AMD11_RS17940 AMD11_RS17960 SM00267 diguanylate cyclase AMD11_RS18010 SM00919 Malic enzyme, NAD binding domain AMD11_RS18010 SM01274 AMD11_RS18010 AMD11_RS18025 SM00387 Histidine kinase-like ATPases AMD11_RS18025 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS18025 SM00448 cheY-homologous receiver domain AMD11_RS18060 SM00421 helix_turn_helix, Lux Regulon AMD11_RS18060 SM00448 cheY-homologous receiver domain AMD11_RS18070 SM00387 Histidine kinase-like ATPases AMD11_RS18070 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS18075 SM00448 cheY-homologous receiver domain AMD11_RS18075 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS18090 SM00822 AMD11_RS18090 AMD11_RS18095 SM00354 helix_turn _helix lactose operon repressor AMD11_RS18110 SM00642 Alpha-amylase domain AMD11_RS18120 SM01154 AMD11_RS18120 AMD11_RS18155 SM00450 Rhodanese Homology Domain AMD11_RS18215 SM00028 Tetratricopeptide repeats AMD11_RS18300 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD11_RS18300 SM00866 AMD11_RS18300 AMD11_RS18360 SM00382 ATPases associated with a variety of cellular activities AMD11_RS18390 SM01211 AMD11_RS18390 AMD11_RS18455 SM00656 AMD11_RS18455 AMD11_RS18485 SM00528 Domain in histone-like proteins of HNS family AMD11_RS18500 SM00382 ATPases associated with a variety of cellular activities AMD11_RS18530 SM00882 Coenzyme A transferase AMD11_RS18535 SM00882 Coenzyme A transferase AMD11_RS18550 SM00984 UDP binding domain AMD11_RS18575 SM00893 Electron transfer flavoprotein domain AMD11_RS18580 SM00893 Electron transfer flavoprotein domain AMD11_RS18650 SM00382 ATPases associated with a variety of cellular activities AMD11_RS18665 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD11_RS18705 SM00487 DEAD-like helicases superfamily AMD11_RS18705 SM00490 helicase superfamily c-terminal domain AMD11_RS18740 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS18775 SM00825 Beta-ketoacyl synthase AMD11_RS18845 SM00382 ATPases associated with a variety of cellular activities AMD11_RS18865 SM00382 ATPases associated with a variety of cellular activities AMD11_RS18865 SM00448 cheY-homologous receiver domain AMD11_RS18870 SM00387 Histidine kinase-like ATPases AMD11_RS18885 SM00830 Chorismate mutase type II AMD11_RS18895 SM00382 ATPases associated with a variety of cellular activities AMD11_RS18965 SM00986 Uracil DNA glycosylase superfamily AMD11_RS18965 SM00987 UreE urease accessory protein, C-terminal domain AMD11_RS19005 SM00382 ATPases associated with a variety of cellular activities AMD11_RS19005 SM00930 AMD11_RS19005 AMD11_RS19025 SM00387 Histidine kinase-like ATPases AMD11_RS19025 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS19025 SM00448 cheY-homologous receiver domain AMD11_RS19080 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS19080 SM00091 PAS domain AMD11_RS19080 SM00387 Histidine kinase-like ATPases AMD11_RS19080 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS19080 SM00448 cheY-homologous receiver domain AMD11_RS19100 SM01005 Alanine racemase, C-terminal domain AMD11_RS19110 SM00344 helix_turn_helix ASNC type AMD11_RS19165 SM00382 ATPases associated with a variety of cellular activities AMD11_RS19175 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AMD11_RS19180 SM00986 Uracil DNA glycosylase superfamily AMD11_RS19180 SM00987 UreE urease accessory protein, C-terminal domain AMD11_RS19185 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD11_RS19250 SM00448 cheY-homologous receiver domain AMD11_RS19250 SM00850 LytTr DNA-binding domain AMD11_RS19255 SM00387 Histidine kinase-like ATPases AMD11_RS19295 SM00091 PAS domain AMD11_RS19295 SM00138 Methyltransferase, chemotaxis proteins AMD11_RS19295 SM00911 HWE histidine kinase AMD11_RS19300 SM00448 cheY-homologous receiver domain AMD11_RS19310 SM00382 ATPases associated with a variety of cellular activities AMD11_RS19310 SM00448 cheY-homologous receiver domain AMD11_RS19365 SM00382 ATPases associated with a variety of cellular activities AMD11_RS19440 SM00382 ATPases associated with a variety of cellular activities AMD11_RS19445 SM00631 AMD11_RS19445 AMD11_RS19485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD11_RS19485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS19490 SM00477 DNA/RNA non-specific endonuclease AMD11_RS19490 SM00892 DNA/RNA non-specific endonuclease AMD11_RS19640 SM00257 Lysin motif AMD11_RS19665 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD11_RS19665 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD11_RS19665 SM00493 AMD11_RS19665 AMD11_RS19720 SM00487 DEAD-like helicases superfamily AMD11_RS19720 SM00490 helicase superfamily c-terminal domain AMD11_RS19755 SM00986 Uracil DNA glycosylase superfamily AMD11_RS19755 SM00987 UreE urease accessory protein, C-terminal domain AMD11_RS19760 SM00448 cheY-homologous receiver domain AMD11_RS19770 SM00382 ATPases associated with a variety of cellular activities AMD11_RS19775 SM00487 DEAD-like helicases superfamily AMD11_RS19775 SM00490 helicase superfamily c-terminal domain AMD11_RS19785 SM00357 Cold shock protein domain AMD11_RS19785 SM00382 ATPases associated with a variety of cellular activities AMD11_RS19785 SM00959 Rho termination factor, N-terminal domain AMD11_RS19815 SM00487 DEAD-like helicases superfamily AMD11_RS19855 SM00257 Lysin motif AMD11_RS19885 SM01150 AMD11_RS19885 AMD11_RS19930 SM00644 AMD11_RS19930 AMD11_RS19940 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD11_RS19975 SM01217 AMD11_RS19975 AMD11_RS19980 SM00905 Dihydroneopterin aldolase AMD11_RS20005 SM00400 zinc finger AMD11_RS20005 SM00493 AMD11_RS20005 AMD11_RS20005 SM00766 DNA primase DnaG DnaB-binding AMD11_RS20105 SM00363 S4 RNA-binding domain AMD11_RS20150 SM00470 ParB-like nuclease domain AMD11_RS20170 SM01259 AMD11_RS20170 AMD11_RS20200 SM00836 DALR anticodon binding domain AMD11_RS20200 SM01016 Arginyl tRNA synthetase N terminal dom AMD11_RS20230 SM00823 Phosphopantetheine attachment site AMD11_RS20230 SM00824 Thioesterase AMD11_RS20275 SM00938 Nitrogen regulatory protein P-II AMD11_RS20285 SM00382 ATPases associated with a variety of cellular activities AMD11_RS20375 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS20395 SM00052 Putative diguanylate phosphodiesterase AMD11_RS20425 SM00244 prohibitin homologues AMD11_RS20475 SM00448 cheY-homologous receiver domain AMD11_RS20475 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS20480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD11_RS20480 SM00387 Histidine kinase-like ATPases AMD11_RS20480 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS20500 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD11_RS20545 SM01060 AMD11_RS20545 AMD11_RS20560 SM00421 helix_turn_helix, Lux Regulon AMD11_RS20560 SM00448 cheY-homologous receiver domain AMD11_RS20575 SM00382 ATPases associated with a variety of cellular activities AMD11_RS20615 SM00849 Metallo-beta-lactamase superfamily AMD11_RS20645 SM00960 Roadblock/LC7 domain AMD11_RS20710 SM00387 Histidine kinase-like ATPases AMD11_RS20710 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS20715 SM00448 cheY-homologous receiver domain AMD11_RS20715 SM00862 Transcriptional regulatory protein, C terminal AMD11_RS20735 SM00248 ankyrin repeats AMD11_RS20745 SM00491 AMD11_RS20745 AMD11_RS20775 SM00477 DNA/RNA non-specific endonuclease AMD11_RS20775 SM00892 DNA/RNA non-specific endonuclease AMD11_RS20790 SM01004 Delta-aminolevulinic acid dehydratase AMD11_RS20840 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD11_RS20860 SM00382 ATPases associated with a variety of cellular activities AMD11_RS20870 SM00530 Helix-turn-helix XRE-family like proteins AMD11_RS20910 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS20920 SM00382 ATPases associated with a variety of cellular activities AMD11_RS20980 SM00881 CoA binding domain AMD11_RS20985 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD11_RS20985 SM00924 MgtE intracellular N domain AMD11_RS20990 SM01057 Eukaryotic-type carbonic anhydrase AMD11_RS21015 SM00248 ankyrin repeats AMD11_RS21025 SM00825 Beta-ketoacyl synthase AMD11_RS21050 SM00822 AMD11_RS21050 AMD11_RS21095 SM00563 Phosphate acyltransferases AMD11_RS21150 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD11_RS21150 SM00474 3'-5' exonuclease AMD11_RS21150 SM00475 5'-3' exonuclease AMD11_RS21150 SM00482 DNA polymerase A domain AMD11_RS21165 SM00912 haemagglutination activity domain AMD11_RS21185 SM00331 Sigma factor PP2C-like phosphatases AMD11_RS21185 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD11_RS21210 SM00240 Forkhead associated domain AMD11_RS21225 SM00028 Tetratricopeptide repeats AMD11_RS21235 SM00220 Serine/Threonine protein kinases, catalytic domain AMD11_RS21255 SM00965 Secretin and TonB N terminus short domain AMD11_RS21265 SM00915 Jacalin-like lectin domain AMD11_RS21290 SM00382 ATPases associated with a variety of cellular activities AMD11_RS21290 SM01086 C-terminal, D2-small domain, of ClpB protein AMD11_RS21330 SM00342 helix_turn_helix, arabinose operon control protein AMD11_RS21340 SM01266 AMD11_RS21340 AMD11_RS21360 SM00155 Phospholipase D. Active site motifs. AMD11_RS21500 SM00421 helix_turn_helix, Lux Regulon AMD11_RS21500 SM00448 cheY-homologous receiver domain AMD11_RS21555 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD11_RS21575 SM00346 helix_turn_helix isocitrate lyase regulation AMD11_RS21585 SM00091 PAS domain AMD11_RS21585 SM00387 Histidine kinase-like ATPases AMD11_RS21585 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS21585 SM00448 cheY-homologous receiver domain AMD11_RS21615 SM00564 beta-propeller repeat AMD11_RS21670 SM00382 ATPases associated with a variety of cellular activities AMD11_RS21675 SM00836 DALR anticodon binding domain AMD11_RS21685 SM00382 ATPases associated with a variety of cellular activities AMD11_RS21760 SM00354 helix_turn _helix lactose operon repressor AMD11_RS21775 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD11_RS21785 SM00758 AMD11_RS21785 AMD11_RS21785 SM01217 AMD11_RS21785 AMD11_RS21805 SM00612 AMD11_RS21805 AMD11_RS21835 SM01007 Class II Aldolase and Adducin N-terminal domain AMD11_RS21870 SM00633 Glycosyl hydrolase family 10 AMD11_RS21885 SM00633 Glycosyl hydrolase family 10 AMD11_RS21900 SM00633 Glycosyl hydrolase family 10 AMD11_RS21955 SM00829 Enoylreductase AMD11_RS21960 SM00563 Phosphate acyltransferases AMD11_RS21970 SM00354 helix_turn _helix lactose operon repressor AMD11_RS21995 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD11_RS22030 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS22030 SM00388 His Kinase A (phosphoacceptor) domain AMD11_RS22045 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD11_RS22045 SM01232 AMD11_RS22045 AMD11_RS22085 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS22085 SM00091 PAS domain AMD11_RS22140 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD11_RS22175 SM00155 Phospholipase D. Active site motifs. AMD11_RS22260 SM00796 Allophanate hydrolase subunit 1 AMD11_RS22260 SM00797 Allophanate hydrolase subunit 2 AMD11_RS22260 SM00878 Biotin carboxylase C-terminal domain AMD11_RS22320 SM00382 ATPases associated with a variety of cellular activities AMD11_RS22370 SM00829 Enoylreductase AMD11_RS22410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD11_RS22410 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD11_RS22410 SM00091 PAS domain AMD11_RS22410 SM00267 diguanylate cyclase AMD11_RS22440 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD11_RS22465 SM00014 Acid phosphatase homologues AMD11_RS22475 SM00028 Tetratricopeptide repeats