locus-tag class description AMD22_RS00235 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD22_RS00370 PF04898 Glutamate synthase central domain AMD22_RS00370 PF01493 GXGXG motif AMD22_RS00370 PF01645 Conserved region in glutamate synthase AMD22_RS00370 PF00310 Glutamine amidotransferases class-II AMD22_RS00380 PF00310 Glutamine amidotransferases class-II AMD22_RS00380 PF04898 Glutamate synthase central domain AMD22_RS00380 PF01645 Conserved region in glutamate synthase AMD22_RS00380 PF01493 GXGXG motif AMD22_RS00475 PF00733 Asparagine synthase AMD22_RS00475 PF13537 Glutamine amidotransferase domain AMD22_RS00500 PF00308 Bacterial dnaA protein AMD22_RS00500 PF08299 Bacterial dnaA protein helix-turn-helix AMD22_RS00500 PF11638 DnaA N-terminal domain AMD22_RS00505 PF02767 DNA polymerase III beta subunit, central domain AMD22_RS00505 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD22_RS00505 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD22_RS00510 PF02463 RecF/RecN/SMC N terminal domain AMD22_RS00515 PF00204 DNA gyrase B AMD22_RS00515 PF01751 Toprim domain AMD22_RS00515 PF18053 DNA gyrase B subunit insert domain AMD22_RS00515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS00515 PF00986 DNA gyrase B subunit, carboxyl terminus AMD22_RS00525 PF01435 Peptidase family M48 AMD22_RS00535 PF03544 Gram-negative bacterial TonB protein C-terminal AMD22_RS00540 PF01618 MotA/TolQ/ExbB proton channel family AMD22_RS00545 PF02472 Biopolymer transport protein ExbD/TolR AMD22_RS00550 PF02472 Biopolymer transport protein ExbD/TolR AMD22_RS00555 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD22_RS00565 PF13396 Phospholipase_D-nuclease N-terminal AMD22_RS00565 PF13091 PLD-like domain AMD22_RS00580 PF04055 Radical SAM superfamily AMD22_RS00590 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD22_RS00605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD22_RS00605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD22_RS00610 PF13180 PDZ domain AMD22_RS00610 PF03572 Peptidase family S41 AMD22_RS00615 PF01551 Peptidase family M23 AMD22_RS00625 PF04389 Peptidase family M28 AMD22_RS00635 PF00150 Cellulase (glycosyl hydrolase family 5) AMD22_RS00640 PF00150 Cellulase (glycosyl hydrolase family 5) AMD22_RS00645 PF00150 Cellulase (glycosyl hydrolase family 5) AMD22_RS00650 PF00107 Zinc-binding dehydrogenase AMD22_RS00650 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS00655 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD22_RS00655 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS00660 PF01493 GXGXG motif AMD22_RS00660 PF01645 Conserved region in glutamate synthase AMD22_RS00660 PF04898 Glutamate synthase central domain AMD22_RS00660 PF00310 Glutamine amidotransferases class-II AMD22_RS00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS00690 PF03466 LysR substrate binding domain AMD22_RS00705 PF02397 Bacterial sugar transferase AMD22_RS00710 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD22_RS00720 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD22_RS00725 PF00534 Glycosyl transferases group 1 AMD22_RS00725 PF13439 Glycosyltransferase Family 4 AMD22_RS00745 PF13537 Glutamine amidotransferase domain AMD22_RS00745 PF00733 Asparagine synthase AMD22_RS00760 PF16363 GDP-mannose 4,6 dehydratase AMD22_RS00775 PF00005 ABC transporter AMD22_RS00775 PF00664 ABC transporter transmembrane region AMD22_RS00790 PF00733 Asparagine synthase AMD22_RS00790 PF13537 Glutamine amidotransferase domain AMD22_RS00805 PF02603 HPr Serine kinase N terminus AMD22_RS00805 PF07475 HPr Serine kinase C-terminal domain AMD22_RS00810 PF00685 Sulfotransferase domain AMD22_RS00885 PF00271 Helicase conserved C-terminal domain AMD22_RS00885 PF00270 DEAD/DEAH box helicase AMD22_RS00885 PF09369 Domain of unknown function (DUF1998) AMD22_RS00890 PF03006 Haemolysin-III related AMD22_RS00905 PF00106 short chain dehydrogenase AMD22_RS00915 PF03466 LysR substrate binding domain AMD22_RS00915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS00930 PF02525 Flavodoxin-like fold AMD22_RS00990 PF05532 CsbD-like AMD22_RS01010 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD22_RS01010 PF01447 Thermolysin metallopeptidase, catalytic domain AMD22_RS01010 PF16485 Protealysin propeptide AMD22_RS01020 PF13344 Haloacid dehalogenase-like hydrolase AMD22_RS01020 PF00293 NUDIX domain AMD22_RS01040 PF00085 Thioredoxin AMD22_RS01050 PF08946 Osmosensory transporter coiled coil AMD22_RS01050 PF00083 Sugar (and other) transporter AMD22_RS01090 PF07726 ATPase family associated with various cellular activities (AAA) AMD22_RS01090 PF17863 AAA lid domain AMD22_RS01120 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMD22_RS01125 PF00155 Aminotransferase class I and II AMD22_RS01130 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS01130 PF00593 TonB dependent receptor AMD22_RS01140 PF07883 Cupin domain AMD22_RS01145 PF00171 Aldehyde dehydrogenase family AMD22_RS01165 PF02735 Ku70/Ku80 beta-barrel domain AMD22_RS01170 PF01070 FMN-dependent dehydrogenase AMD22_RS01180 PF00144 Beta-lactamase AMD22_RS01185 PF07730 Histidine kinase AMD22_RS01190 PF00072 Response regulator receiver domain AMD22_RS01190 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS01210 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS01210 PF18500 CadC C-terminal domain 1 AMD22_RS01215 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMD22_RS01215 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMD22_RS01215 PF07055 Enoyl reductase FAD binding domain AMD22_RS01225 PF00294 pfkB family carbohydrate kinase AMD22_RS01285 PF13333 Integrase core domain AMD22_RS01285 PF00665 Integrase core domain AMD22_RS01285 PF13276 HTH-like domain AMD22_RS01290 PF11896 Domain of unknown function (DUF3416) AMD22_RS01290 PF00128 Alpha amylase, catalytic domain AMD22_RS01295 PF00128 Alpha amylase, catalytic domain AMD22_RS01295 PF16657 Maltogenic Amylase, C-terminal domain AMD22_RS01300 PF02806 Alpha amylase, C-terminal all-beta domain AMD22_RS01300 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD22_RS01300 PF00128 Alpha amylase, catalytic domain AMD22_RS01310 PF00248 Aldo/keto reductase family AMD22_RS01315 PF00135 Carboxylesterase family AMD22_RS01320 PF13472 GDSL-like Lipase/Acylhydrolase family AMD22_RS01320 PF07859 alpha/beta hydrolase fold AMD22_RS01330 PF03480 Bacterial extracellular solute-binding protein, family 7 AMD22_RS01340 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMD22_RS01345 PF04616 Glycosyl hydrolases family 43 AMD22_RS01345 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD22_RS01350 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS01355 PF04962 KduI/IolB family AMD22_RS01370 PF00657 GDSL-like Lipase/Acylhydrolase AMD22_RS01385 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMD22_RS01390 PF01037 Lrp/AsnC ligand binding domain AMD22_RS01395 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS01395 PF07660 Secretin and TonB N terminus short domain AMD22_RS01395 PF00593 TonB dependent receptor AMD22_RS01400 PF01734 Patatin-like phospholipase AMD22_RS01410 PF00005 ABC transporter AMD22_RS01425 PF00005 ABC transporter AMD22_RS01430 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS01440 PF03781 Sulfatase-modifying factor enzyme 1 AMD22_RS01440 PF12867 DinB superfamily AMD22_RS01460 PF01381 Helix-turn-helix AMD22_RS01485 PF01883 Iron-sulfur cluster assembly protein AMD22_RS01485 PF10609 NUBPL iron-transfer P-loop NTPase AMD22_RS01500 PF13091 PLD-like domain AMD22_RS01505 PF03061 Thioesterase superfamily AMD22_RS01535 PF00107 Zinc-binding dehydrogenase AMD22_RS01535 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS01545 PF02673 Bacitracin resistance protein BacA AMD22_RS01550 PF00120 Glutamine synthetase, catalytic domain AMD22_RS01550 PF03951 Glutamine synthetase, beta-Grasp domain AMD22_RS01555 PF00543 Nitrogen regulatory protein P-II AMD22_RS01560 PF00909 Ammonium Transporter Family AMD22_RS01565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS01565 PF00989 PAS fold AMD22_RS01565 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS01570 PF00072 Response regulator receiver domain AMD22_RS01570 PF02954 Bacterial regulatory protein, Fis family AMD22_RS01570 PF00158 Sigma-54 interaction domain AMD22_RS01575 PF00080 Copper/zinc superoxide dismutase (SODC) AMD22_RS01580 PF00080 Copper/zinc superoxide dismutase (SODC) AMD22_RS01585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD22_RS01595 PF02803 Thiolase, C-terminal domain AMD22_RS01595 PF00108 Thiolase, N-terminal domain AMD22_RS01630 PF00581 Rhodanese-like domain AMD22_RS01635 PF02556 Preprotein translocase subunit SecB AMD22_RS01640 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD22_RS01640 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD22_RS01650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD22_RS01650 PF00205 Thiamine pyrophosphate enzyme, central domain AMD22_RS01650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD22_RS01655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS01660 PF02954 Bacterial regulatory protein, Fis family AMD22_RS01660 PF00158 Sigma-54 interaction domain AMD22_RS01660 PF00072 Response regulator receiver domain AMD22_RS01675 PF07690 Major Facilitator Superfamily AMD22_RS01680 PF00588 SpoU rRNA Methylase family AMD22_RS01695 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD22_RS01695 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD22_RS01700 PF02661 Fic/DOC family AMD22_RS01700 PF13784 Fic/DOC family N-terminal AMD22_RS01705 PF00561 alpha/beta hydrolase fold AMD22_RS01710 PF03692 Putative zinc- or iron-chelating domain AMD22_RS01715 PF00501 AMP-binding enzyme AMD22_RS01720 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD22_RS01735 PF07478 D-ala D-ala ligase C-terminus AMD22_RS01735 PF01820 D-ala D-ala ligase N-terminus AMD22_RS01745 PF03109 ABC1 family AMD22_RS01755 PF00849 RNA pseudouridylate synthase AMD22_RS01765 PF00472 RF-1 domain AMD22_RS01775 PF01112 Asparaginase AMD22_RS01780 PF01432 Peptidase family M3 AMD22_RS01785 PF12706 Beta-lactamase superfamily domain AMD22_RS01805 PF12833 Helix-turn-helix domain AMD22_RS01810 PF00999 Sodium/hydrogen exchanger family AMD22_RS01815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS01815 PF03466 LysR substrate binding domain AMD22_RS01820 PF01274 Malate synthase AMD22_RS01825 PF00463 Isocitrate lyase family AMD22_RS01830 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS01850 PF00326 Prolyl oligopeptidase family AMD22_RS01855 PF18140 Propionyl-coenzyme A carboxylase BT domain AMD22_RS01855 PF02785 Biotin carboxylase C-terminal domain AMD22_RS01855 PF00364 Biotin-requiring enzyme AMD22_RS01855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD22_RS01855 PF00289 Biotin carboxylase, N-terminal domain AMD22_RS01860 PF01039 Carboxyl transferase domain AMD22_RS01865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD22_RS01865 PF02770 Acyl-CoA dehydrogenase, middle domain AMD22_RS01865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD22_RS01920 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMD22_RS01920 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMD22_RS01945 PF03969 AFG1-like ATPase AMD22_RS01950 PF01047 MarR family AMD22_RS01955 PF02566 OsmC-like protein AMD22_RS01985 PF00107 Zinc-binding dehydrogenase AMD22_RS01985 PF16884 N-terminal domain of oxidoreductase AMD22_RS01990 PF00248 Aldo/keto reductase family AMD22_RS02000 PF00849 RNA pseudouridylate synthase AMD22_RS02005 PF00593 TonB dependent receptor AMD22_RS02015 PF08482 ATP-dependent helicase C-terminal AMD22_RS02015 PF00271 Helicase conserved C-terminal domain AMD22_RS02015 PF04408 Helicase associated domain (HA2) AMD22_RS02015 PF00270 DEAD/DEAH box helicase AMD22_RS02025 PF07308 Protein of unknown function (DUF1456) AMD22_RS02030 PF00576 HIUase/Transthyretin family AMD22_RS02035 PF13454 FAD-NAD(P)-binding AMD22_RS02040 PF09349 OHCU decarboxylase AMD22_RS02040 PF01014 Uricase AMD22_RS02055 PF00266 Aminotransferase class-V AMD22_RS02060 PF07687 Peptidase dimerisation domain AMD22_RS02060 PF01546 Peptidase family M20/M25/M40 AMD22_RS02065 PF03466 LysR substrate binding domain AMD22_RS02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS02070 PF07690 Major Facilitator Superfamily AMD22_RS02085 PF01425 Amidase AMD22_RS02090 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD22_RS02100 PF00860 Permease family AMD22_RS02110 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD22_RS02115 PF00355 Rieske [2Fe-2S] domain AMD22_RS02120 PF03466 LysR substrate binding domain AMD22_RS02120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS02125 PF01026 TatD related DNase AMD22_RS02140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS02140 PF03466 LysR substrate binding domain AMD22_RS02145 PF07690 Major Facilitator Superfamily AMD22_RS02160 PF02146 Sir2 family AMD22_RS02165 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD22_RS02170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD22_RS02170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD22_RS02180 PF00551 Formyl transferase AMD22_RS02185 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS02185 PF00072 Response regulator receiver domain AMD22_RS02190 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS02190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS02190 PF00672 HAMP domain AMD22_RS02195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS02195 PF00529 HlyD membrane-fusion protein of T1SS AMD22_RS02200 PF00873 AcrB/AcrD/AcrF family AMD22_RS02205 PF02321 Outer membrane efflux protein AMD22_RS02215 PF02219 Methylenetetrahydrofolate reductase AMD22_RS02220 PF02677 Epoxyqueuosine reductase QueH AMD22_RS02225 PF03466 LysR substrate binding domain AMD22_RS02225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS02230 PF03358 NADPH-dependent FMN reductase AMD22_RS02240 PF01717 Cobalamin-independent synthase, Catalytic domain AMD22_RS02240 PF08267 Cobalamin-independent synthase, N-terminal domain AMD22_RS02245 PF03812 2-keto-3-deoxygluconate permease AMD22_RS02255 PF05368 NmrA-like family AMD22_RS02260 PF01638 HxlR-like helix-turn-helix AMD22_RS02285 PF13276 HTH-like domain AMD22_RS02285 PF00665 Integrase core domain AMD22_RS02285 PF13333 Integrase core domain AMD22_RS02295 PF13495 Phage integrase, N-terminal SAM-like domain AMD22_RS02295 PF00589 Phage integrase family AMD22_RS02300 PF00920 Dehydratase family AMD22_RS02320 PF00132 Bacterial transferase hexapeptide (six repeats) AMD22_RS02330 PF07690 Major Facilitator Superfamily AMD22_RS02335 PF01966 HD domain AMD22_RS02335 PF11871 Domain of unknown function (DUF3391) AMD22_RS02355 PF00171 Aldehyde dehydrogenase family AMD22_RS02365 PF01494 FAD binding domain AMD22_RS02375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD22_RS02375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD22_RS02380 PF00230 Major intrinsic protein AMD22_RS02385 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMD22_RS02385 PF01266 FAD dependent oxidoreductase AMD22_RS02390 PF08220 DeoR-like helix-turn-helix domain AMD22_RS02390 PF00455 DeoR C terminal sensor domain AMD22_RS02395 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD22_RS02395 PF00970 Oxidoreductase FAD-binding domain AMD22_RS02400 PF00355 Rieske [2Fe-2S] domain AMD22_RS02405 PF01144 Coenzyme A transferase AMD22_RS02410 PF01144 Coenzyme A transferase AMD22_RS02415 PF00108 Thiolase, N-terminal domain AMD22_RS02415 PF02803 Thiolase, C-terminal domain AMD22_RS02420 PF00775 Dioxygenase AMD22_RS02420 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMD22_RS02430 PF10397 Adenylosuccinate lyase C-terminus AMD22_RS02430 PF00206 Lyase AMD22_RS02435 PF12146 Serine aminopeptidase, S33 AMD22_RS02440 PF02627 Carboxymuconolactone decarboxylase family AMD22_RS02450 PF09339 IclR helix-turn-helix domain AMD22_RS02450 PF01614 Bacterial transcriptional regulator AMD22_RS02460 PF07859 alpha/beta hydrolase fold AMD22_RS02465 PF10677 Protein of unknown function (DUF2490) AMD22_RS02470 PF13932 GidA associated domain AMD22_RS02470 PF01134 Glucose inhibited division protein A AMD22_RS02480 PF00291 Pyridoxal-phosphate dependent enzyme AMD22_RS02500 PF13649 Methyltransferase domain AMD22_RS02510 PF12697 Alpha/beta hydrolase family AMD22_RS02520 PF00155 Aminotransferase class I and II AMD22_RS02525 PF06968 Biotin and Thiamin Synthesis associated domain AMD22_RS02525 PF04055 Radical SAM superfamily AMD22_RS02535 PF01040 UbiA prenyltransferase family AMD22_RS02550 PF05819 NolX protein AMD22_RS02585 PF01313 Bacterial export proteins, family 3 AMD22_RS02590 PF00813 FliP family AMD22_RS02605 PF00771 FHIPEP family AMD22_RS02610 PF01312 FlhB HrpN YscU SpaS Family AMD22_RS02625 PF01514 Secretory protein of YscJ/FliF family AMD22_RS02640 PF18269 T3SS EscN ATPase C-terminal domain AMD22_RS02640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD22_RS02640 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD22_RS02650 PF01311 Bacterial export proteins, family 1 AMD22_RS02655 PF03958 Bacterial type II/III secretion system short domain AMD22_RS02655 PF00263 Bacterial type II and III secretion system protein AMD22_RS02665 PF01464 Transglycosylase SLT domain AMD22_RS02680 PF12795 Mechanosensitive ion channel porin domain AMD22_RS02680 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMD22_RS02680 PF00924 Mechanosensitive ion channel AMD22_RS02685 PF00884 Sulfatase AMD22_RS02690 PF03109 ABC1 family AMD22_RS02695 PF05661 Protein of unknown function (DUF808) AMD22_RS02700 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS02705 PF08323 Starch synthase catalytic domain AMD22_RS02705 PF00534 Glycosyl transferases group 1 AMD22_RS02710 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD22_RS02710 PF00128 Alpha amylase, catalytic domain AMD22_RS02710 PF02806 Alpha amylase, C-terminal all-beta domain AMD22_RS02715 PF00128 Alpha amylase, catalytic domain AMD22_RS02715 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD22_RS02715 PF11941 Domain of unknown function (DUF3459) AMD22_RS02720 PF02446 4-alpha-glucanotransferase AMD22_RS02725 PF00128 Alpha amylase, catalytic domain AMD22_RS02735 PF00128 Alpha amylase, catalytic domain AMD22_RS02735 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD22_RS02740 PF13460 NAD(P)H-binding AMD22_RS02760 PF06903 VirK protein AMD22_RS02765 PF02321 Outer membrane efflux protein AMD22_RS02780 PF00873 AcrB/AcrD/AcrF family AMD22_RS02795 PF00271 Helicase conserved C-terminal domain AMD22_RS02795 PF00270 DEAD/DEAH box helicase AMD22_RS02800 PF00364 Biotin-requiring enzyme AMD22_RS02800 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD22_RS02800 PF02817 e3 binding domain AMD22_RS02810 PF02780 Transketolase, C-terminal domain AMD22_RS02810 PF02779 Transketolase, pyrimidine binding domain AMD22_RS02815 PF00676 Dehydrogenase E1 component AMD22_RS02825 PF03301 Tryptophan 2,3-dioxygenase AMD22_RS02830 PF00854 POT family AMD22_RS02840 PF01047 MarR family AMD22_RS02845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD22_RS02850 PF04209 homogentisate 1,2-dioxygenase AMD22_RS02865 PF03334 Na+/H+ antiporter subunit AMD22_RS02870 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMD22_RS02880 PF00361 Proton-conducting membrane transporter AMD22_RS02885 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD22_RS02890 PF13244 Domain of unknown function (DUF4040) AMD22_RS02890 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD22_RS02890 PF00361 Proton-conducting membrane transporter AMD22_RS02890 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMD22_RS02905 PF07504 Fungalysin/Thermolysin Propeptide Motif AMD22_RS02905 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD22_RS02905 PF01447 Thermolysin metallopeptidase, catalytic domain AMD22_RS02905 PF01483 Proprotein convertase P-domain AMD22_RS02910 PF00182 Chitinase class I AMD22_RS02930 PF01259 SAICAR synthetase AMD22_RS02935 PF05099 Tellurite resistance protein TerB AMD22_RS02935 PF00226 DnaJ domain AMD22_RS02945 PF00834 Ribulose-phosphate 3 epimerase family AMD22_RS02950 PF00583 Acetyltransferase (GNAT) family AMD22_RS02955 PF00781 Diacylglycerol kinase catalytic domain AMD22_RS02960 PF00425 chorismate binding enzyme AMD22_RS02960 PF04715 Anthranilate synthase component I, N terminal region AMD22_RS02970 PF00117 Glutamine amidotransferase class-I AMD22_RS02980 PF00591 Glycosyl transferase family, a/b domain AMD22_RS02980 PF02885 Glycosyl transferase family, helical bundle domain AMD22_RS02985 PF00218 Indole-3-glycerol phosphate synthase AMD22_RS02995 PF00325 Bacterial regulatory proteins, crp family AMD22_RS02995 PF00027 Cyclic nucleotide-binding domain AMD22_RS03000 PF02675 S-adenosylmethionine decarboxylase AMD22_RS03005 PF00893 Small Multidrug Resistance protein AMD22_RS03010 PF03232 Ubiquinone biosynthesis protein COQ7 AMD22_RS03015 PF00572 Ribosomal protein L13 AMD22_RS03020 PF00380 Ribosomal protein S9/S16 AMD22_RS03035 PF00293 NUDIX domain AMD22_RS03045 PF00210 Ferritin-like domain AMD22_RS03050 PF01627 Hpt domain AMD22_RS03050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS03050 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS03050 PF00672 HAMP domain AMD22_RS03050 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD22_RS03050 PF00072 Response regulator receiver domain AMD22_RS03055 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS03055 PF00072 Response regulator receiver domain AMD22_RS03075 PF01521 Iron-sulphur cluster biosynthesis AMD22_RS03095 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMD22_RS03095 PF09297 NADH pyrophosphatase zinc ribbon domain AMD22_RS03095 PF00293 NUDIX domain AMD22_RS03100 PF03186 CobD/Cbib protein AMD22_RS03100 PF17113 Regulatory signalling modulator protein AmpE AMD22_RS03120 PF07690 Major Facilitator Superfamily AMD22_RS03125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS03125 PF03466 LysR substrate binding domain AMD22_RS03130 PF07690 Major Facilitator Superfamily AMD22_RS03135 PF12805 FUSC-like inner membrane protein yccS AMD22_RS03145 PF02844 Phosphoribosylglycinamide synthetase, N domain AMD22_RS03145 PF02843 Phosphoribosylglycinamide synthetase, C domain AMD22_RS03145 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD22_RS03155 PF01808 AICARFT/IMPCHase bienzyme AMD22_RS03155 PF02142 MGS-like domain AMD22_RS03160 PF01066 CDP-alcohol phosphatidyltransferase AMD22_RS03165 PF12146 Serine aminopeptidase, S33 AMD22_RS03165 PF12147 Putative methyltransferase AMD22_RS03170 PF00782 Dual specificity phosphatase, catalytic domain AMD22_RS03200 PF02954 Bacterial regulatory protein, Fis family AMD22_RS03215 PF01381 Helix-turn-helix AMD22_RS03240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD22_RS03240 PF00289 Biotin carboxylase, N-terminal domain AMD22_RS03240 PF02785 Biotin carboxylase C-terminal domain AMD22_RS03250 PF00364 Biotin-requiring enzyme AMD22_RS03255 PF01220 Dehydroquinase class II AMD22_RS03260 PF02683 Cytochrome C biogenesis protein transmembrane region AMD22_RS03260 PF11412 Disulphide bond corrector protein DsbC AMD22_RS03265 PF03091 CutA1 divalent ion tolerance protein AMD22_RS03280 PF01852 START domain AMD22_RS03290 PF00106 short chain dehydrogenase AMD22_RS03295 PF04231 Endonuclease I AMD22_RS03300 PF00166 Chaperonin 10 Kd subunit AMD22_RS03305 PF00118 TCP-1/cpn60 chaperonin family AMD22_RS03315 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS03315 PF00593 TonB dependent receptor AMD22_RS03320 PF00793 DAHP synthetase I family AMD22_RS03335 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD22_RS03345 PF08335 GlnD PII-uridylyltransferase AMD22_RS03345 PF03710 Glutamate-ammonia ligase adenylyltransferase AMD22_RS03350 PF02592 Putative vitamin uptake transporter AMD22_RS03370 PF00881 Nitroreductase family AMD22_RS03375 PF04264 YceI-like domain AMD22_RS03400 PF16957 Malonate decarboxylase, alpha subunit, transporter AMD22_RS03405 PF06857 Malonate decarboxylase delta subunit (MdcD) AMD22_RS03410 PF01039 Carboxyl transferase domain AMD22_RS03420 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AMD22_RS03425 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AMD22_RS03430 PF00698 Acyl transferase domain AMD22_RS03440 PF07729 FCD domain AMD22_RS03440 PF00392 Bacterial regulatory proteins, gntR family AMD22_RS03445 PF13419 Haloacid dehalogenase-like hydrolase AMD22_RS03475 PF07745 Glycosyl hydrolase family 53 AMD22_RS03480 PF00456 Transketolase, thiamine diphosphate binding domain AMD22_RS03480 PF17831 Pyruvate dehydrogenase E1 component middle domain AMD22_RS03485 PF13333 Integrase core domain AMD22_RS03485 PF00665 Integrase core domain AMD22_RS03485 PF13276 HTH-like domain AMD22_RS03495 PF00106 short chain dehydrogenase AMD22_RS03510 PF00106 short chain dehydrogenase AMD22_RS03520 PF13409 Glutathione S-transferase, N-terminal domain AMD22_RS03545 PF12823 Domain of unknown function (DUF3817) AMD22_RS03545 PF03176 MMPL family AMD22_RS03550 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD22_RS03550 PF00326 Prolyl oligopeptidase family AMD22_RS03555 PF07759 Protein of unknown function (DUF1615) AMD22_RS03565 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS03590 PF00892 EamA-like transporter family AMD22_RS03595 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD22_RS03605 PF00324 Amino acid permease AMD22_RS03615 PF01544 CorA-like Mg2+ transporter protein AMD22_RS03625 PF01204 Trehalase AMD22_RS03635 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD22_RS03635 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD22_RS03660 PF08447 PAS fold AMD22_RS03660 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS03660 PF08448 PAS fold AMD22_RS03660 PF00563 EAL domain AMD22_RS03665 PF00672 HAMP domain AMD22_RS03665 PF02203 Tar ligand binding domain homologue AMD22_RS03665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS03670 PF00553 Cellulose binding domain AMD22_RS03670 PF00150 Cellulase (glycosyl hydrolase family 5) AMD22_RS03675 PF00916 Sulfate permease family AMD22_RS03675 PF01740 STAS domain AMD22_RS03685 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS03700 PF13632 Glycosyl transferase family group 2 AMD22_RS03710 PF06580 Histidine kinase AMD22_RS03710 PF07694 5TMR of 5TMR-LYT AMD22_RS03715 PF00072 Response regulator receiver domain AMD22_RS03715 PF04397 LytTr DNA-binding domain AMD22_RS03720 PF03900 Porphobilinogen deaminase, C-terminal domain AMD22_RS03720 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMD22_RS03745 PF00326 Prolyl oligopeptidase family AMD22_RS03745 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD22_RS03755 PF00155 Aminotransferase class I and II AMD22_RS03760 PF00326 Prolyl oligopeptidase family AMD22_RS03760 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD22_RS03765 PF04304 Protein of unknown function (DUF454) AMD22_RS03775 PF01678 Diaminopimelate epimerase AMD22_RS03785 PF00589 Phage integrase family AMD22_RS03785 PF02899 Phage integrase, N-terminal SAM-like domain AMD22_RS03790 PF00227 Proteasome subunit AMD22_RS03795 PF00004 ATPase family associated with various cellular activities (AAA) AMD22_RS03795 PF10431 C-terminal, D2-small domain, of ClpB protein AMD22_RS03795 PF07724 AAA domain (Cdc48 subfamily) AMD22_RS03805 PF13673 Acetyltransferase (GNAT) domain AMD22_RS03810 PF13533 Biotin-lipoyl like AMD22_RS03820 PF01209 ubiE/COQ5 methyltransferase family AMD22_RS03825 PF00563 EAL domain AMD22_RS03825 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS03825 PF03707 Bacterial signalling protein N terminal repeat AMD22_RS03830 PF01433 Peptidase family M1 domain AMD22_RS03830 PF11838 ERAP1-like C-terminal domain AMD22_RS03850 PF13360 PQQ-like domain AMD22_RS03855 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD22_RS03870 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS03870 PF00107 Zinc-binding dehydrogenase AMD22_RS03880 PF00158 Sigma-54 interaction domain AMD22_RS03880 PF02954 Bacterial regulatory protein, Fis family AMD22_RS03880 PF01590 GAF domain AMD22_RS03885 PF00294 pfkB family carbohydrate kinase AMD22_RS03895 PF04085 rod shape-determining protein MreC AMD22_RS03905 PF00905 Penicillin binding protein transpeptidase domain AMD22_RS03905 PF03717 Penicillin-binding Protein dimerisation domain AMD22_RS03910 PF01098 Cell cycle protein AMD22_RS03915 PF00295 Glycosyl hydrolases family 28 AMD22_RS03920 PF13406 Transglycosylase SLT domain AMD22_RS03925 PF05036 Sporulation related domain AMD22_RS03925 PF03330 Lytic transglycolase AMD22_RS03935 PF07943 Penicillin-binding protein 5, C-terminal domain AMD22_RS03935 PF00768 D-alanyl-D-alanine carboxypeptidase AMD22_RS03945 PF04359 Protein of unknown function (DUF493) AMD22_RS03950 PF03099 Biotin/lipoate A/B protein ligase family AMD22_RS03955 PF04055 Radical SAM superfamily AMD22_RS03955 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMD22_RS03960 PF17804 Tail specific protease N-terminal domain AMD22_RS03960 PF11818 C-terminal domain of tail specific protease (DUF3340) AMD22_RS03960 PF00595 PDZ domain AMD22_RS03960 PF03572 Peptidase family S41 AMD22_RS03970 PF03466 LysR substrate binding domain AMD22_RS03970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS03980 PF01467 Cytidylyltransferase-like AMD22_RS03980 PF00293 NUDIX domain AMD22_RS04015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD22_RS04015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMD22_RS04020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD22_RS04020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD22_RS04025 PF04972 BON domain AMD22_RS04030 PF00360 Phytochrome region AMD22_RS04030 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS04030 PF08446 PAS fold AMD22_RS04030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS04030 PF01590 GAF domain AMD22_RS04035 PF00072 Response regulator receiver domain AMD22_RS04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS04040 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS04045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD22_RS04050 PF00106 short chain dehydrogenase AMD22_RS04090 PF03958 Bacterial type II/III secretion system short domain AMD22_RS04090 PF00263 Bacterial type II and III secretion system protein AMD22_RS04095 PF00437 Type II/IV secretion system protein AMD22_RS04100 PF00482 Type II secretion system (T2SS), protein F AMD22_RS04105 PF07963 Prokaryotic N-terminal methylation motif AMD22_RS04105 PF08334 Type II secretion system (T2SS), protein G AMD22_RS04110 PF07963 Prokaryotic N-terminal methylation motif AMD22_RS04110 PF12019 Type II transport protein GspH AMD22_RS04115 PF02501 Type II secretion system (T2SS), protein I AMD22_RS04115 PF07963 Prokaryotic N-terminal methylation motif AMD22_RS04120 PF11612 Type II secretion system (T2SS), protein J AMD22_RS04120 PF07963 Prokaryotic N-terminal methylation motif AMD22_RS04125 PF03934 Type II secretion system (T2SS), protein K AMD22_RS04165 PF07702 UTRA domain AMD22_RS04165 PF00392 Bacterial regulatory proteins, gntR family AMD22_RS04170 PF07690 Major Facilitator Superfamily AMD22_RS04175 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS04180 PF01380 SIS domain AMD22_RS04185 PF01979 Amidohydrolase family AMD22_RS04195 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD22_RS04195 PF01966 HD domain AMD22_RS04195 PF01743 Poly A polymerase head domain AMD22_RS04200 PF05199 GMC oxidoreductase AMD22_RS04200 PF00732 GMC oxidoreductase AMD22_RS04205 PF00171 Aldehyde dehydrogenase family AMD22_RS04210 PF02028 BCCT, betaine/carnitine/choline family transporter AMD22_RS04220 PF01323 DSBA-like thioredoxin domain AMD22_RS04230 PF00034 Cytochrome c AMD22_RS04235 PF01926 50S ribosome-binding GTPase AMD22_RS04240 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMD22_RS04240 PF00753 Metallo-beta-lactamase superfamily AMD22_RS04240 PF10996 Beta-Casp domain AMD22_RS04250 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMD22_RS04255 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS04255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS04255 PF00672 HAMP domain AMD22_RS04260 PF00072 Response regulator receiver domain AMD22_RS04260 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS04275 PF02583 Metal-sensitive transcriptional repressor AMD22_RS04280 PF00107 Zinc-binding dehydrogenase AMD22_RS04280 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS04285 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD22_RS04290 PF00756 Putative esterase AMD22_RS04300 PF00155 Aminotransferase class I and II AMD22_RS04300 PF00392 Bacterial regulatory proteins, gntR family AMD22_RS04305 PF02567 Phenazine biosynthesis-like protein AMD22_RS04310 PF00892 EamA-like transporter family AMD22_RS04320 PF12848 ABC transporter AMD22_RS04320 PF00005 ABC transporter AMD22_RS04330 PF00464 Serine hydroxymethyltransferase AMD22_RS04335 PF03477 ATP cone domain AMD22_RS04345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD22_RS04345 PF01872 RibD C-terminal domain AMD22_RS04355 PF00677 Lumazine binding domain AMD22_RS04360 PF00925 GTP cyclohydrolase II AMD22_RS04360 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMD22_RS04365 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMD22_RS04370 PF01029 NusB family AMD22_RS04375 PF00586 AIR synthase related protein, N-terminal domain AMD22_RS04375 PF02769 AIR synthase related protein, C-terminal domain AMD22_RS04395 PF03814 Potassium-transporting ATPase A subunit AMD22_RS04405 PF02669 K+-transporting ATPase, c chain AMD22_RS04410 PF13492 GAF domain AMD22_RS04410 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD22_RS04410 PF13493 Domain of unknown function (DUF4118) AMD22_RS04410 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS04410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS04415 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS04415 PF00072 Response regulator receiver domain AMD22_RS04430 PF01565 FAD binding domain AMD22_RS04430 PF02913 FAD linked oxidases, C-terminal domain AMD22_RS04435 PF04307 LexA-binding, inner membrane-associated putative hydrolase AMD22_RS04440 PF02021 Uncharacterised protein family UPF0102 AMD22_RS04450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD22_RS04465 PF02381 MraZ protein, putative antitoxin-like AMD22_RS04470 PF01795 MraW methylase family AMD22_RS04475 PF04999 Cell division protein FtsL AMD22_RS04480 PF00905 Penicillin binding protein transpeptidase domain AMD22_RS04480 PF03717 Penicillin-binding Protein dimerisation domain AMD22_RS04485 PF01225 Mur ligase family, catalytic domain AMD22_RS04485 PF02875 Mur ligase family, glutamate ligase domain AMD22_RS04485 PF08245 Mur ligase middle domain AMD22_RS04490 PF08245 Mur ligase middle domain AMD22_RS04490 PF02875 Mur ligase family, glutamate ligase domain AMD22_RS04490 PF01225 Mur ligase family, catalytic domain AMD22_RS04495 PF00953 Glycosyl transferase family 4 AMD22_RS04500 PF01098 Cell cycle protein AMD22_RS04505 PF04101 Glycosyltransferase family 28 C-terminal domain AMD22_RS04505 PF03033 Glycosyltransferase family 28 N-terminal domain AMD22_RS04510 PF01225 Mur ligase family, catalytic domain AMD22_RS04510 PF02875 Mur ligase family, glutamate ligase domain AMD22_RS04510 PF08245 Mur ligase middle domain AMD22_RS04515 PF01820 D-ala D-ala ligase N-terminus AMD22_RS04515 PF07478 D-ala D-ala ligase C-terminus AMD22_RS04520 PF03799 Cell division protein FtsQ AMD22_RS04520 PF08478 POTRA domain, FtsQ-type AMD22_RS04525 PF02491 SHS2 domain inserted in FTSA AMD22_RS04530 PF12327 FtsZ family, C-terminal domain AMD22_RS04530 PF00091 Tubulin/FtsZ family, GTPase domain AMD22_RS04535 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMD22_RS04545 PF08525 Opacity-associated protein A N-terminal motif AMD22_RS04545 PF01551 Peptidase family M23 AMD22_RS04545 PF01476 LysM domain AMD22_RS04550 PF01043 SecA preprotein cross-linking domain AMD22_RS04550 PF02810 SEC-C motif AMD22_RS04550 PF07517 SecA DEAD-like domain AMD22_RS04550 PF07516 SecA Wing and Scaffold domain AMD22_RS04555 PF00293 NUDIX domain AMD22_RS04565 PF02219 Methylenetetrahydrofolate reductase AMD22_RS04575 PF00550 Phosphopantetheine attachment site AMD22_RS04575 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD22_RS04575 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD22_RS04575 PF08659 KR domain AMD22_RS04575 PF00698 Acyl transferase domain AMD22_RS04575 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS04575 PF00107 Zinc-binding dehydrogenase AMD22_RS04575 PF16197 Ketoacyl-synthetase C-terminal extension AMD22_RS04575 PF14765 Polyketide synthase dehydratase AMD22_RS04580 PF09286 Pro-kumamolisin, activation domain AMD22_RS04580 PF00082 Subtilase family AMD22_RS04590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD22_RS04595 PF00128 Alpha amylase, catalytic domain AMD22_RS04625 PF13649 Methyltransferase domain AMD22_RS04630 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD22_RS04630 PF05221 S-adenosyl-L-homocysteine hydrolase AMD22_RS04640 PF00311 Phosphoenolpyruvate carboxylase AMD22_RS04670 PF00328 Histidine phosphatase superfamily (branch 2) AMD22_RS04675 PF02772 S-adenosylmethionine synthetase, central domain AMD22_RS04675 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMD22_RS04675 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMD22_RS04685 PF13649 Methyltransferase domain AMD22_RS04690 PF01207 Dihydrouridine synthase (Dus) AMD22_RS04700 PF00294 pfkB family carbohydrate kinase AMD22_RS04705 PF07662 Na+ dependent nucleoside transporter C-terminus AMD22_RS04705 PF07670 Nucleoside recognition AMD22_RS04705 PF01773 Na+ dependent nucleoside transporter N-terminus AMD22_RS04710 PF00248 Aldo/keto reductase family AMD22_RS04720 PF00593 TonB dependent receptor AMD22_RS04720 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS04740 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS04745 PF00005 ABC transporter AMD22_RS04755 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMD22_RS04765 PF00005 ABC transporter AMD22_RS04770 PF13472 GDSL-like Lipase/Acylhydrolase family AMD22_RS04775 PF00072 Response regulator receiver domain AMD22_RS04775 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS04780 PF08521 Two-component sensor kinase N-terminal AMD22_RS04780 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS04780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS04790 PF01219 Prokaryotic diacylglycerol kinase AMD22_RS04810 PF01790 Prolipoprotein diacylglyceryl transferase AMD22_RS04815 PF00303 Thymidylate synthase AMD22_RS04825 PF00186 Dihydrofolate reductase AMD22_RS04830 PF00158 Sigma-54 interaction domain AMD22_RS04835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD22_RS04835 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD22_RS04840 PF00005 ABC transporter AMD22_RS04845 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS04855 PF00296 Luciferase-like monooxygenase AMD22_RS04860 PF03358 NADPH-dependent FMN reductase AMD22_RS04880 PF00296 Luciferase-like monooxygenase AMD22_RS04885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD22_RS04890 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS04895 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS04895 PF12911 N-terminal TM domain of oligopeptide transport permease C AMD22_RS04900 PF00005 ABC transporter AMD22_RS04900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD22_RS04905 PF00149 Calcineurin-like phosphoesterase AMD22_RS04910 PF04379 ApaG domain AMD22_RS04915 PF00398 Ribosomal RNA adenine dimethylase AMD22_RS04920 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMD22_RS04925 PF09312 SurA N-terminal domain AMD22_RS04925 PF00639 PPIC-type PPIASE domain AMD22_RS04930 PF04453 LPS transport system D AMD22_RS04930 PF03968 OstA-like protein AMD22_RS04940 PF00850 Histone deacetylase domain AMD22_RS04945 PF01923 Cobalamin adenosyltransferase AMD22_RS04955 PF01494 FAD binding domain AMD22_RS04960 PF01494 FAD binding domain AMD22_RS04980 PF07729 FCD domain AMD22_RS04980 PF00392 Bacterial regulatory proteins, gntR family AMD22_RS04985 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD22_RS04990 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD22_RS04990 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AMD22_RS04995 PF03466 LysR substrate binding domain AMD22_RS04995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS05000 PF13193 AMP-binding enzyme C-terminal domain AMD22_RS05000 PF00501 AMP-binding enzyme AMD22_RS05005 PF00171 Aldehyde dehydrogenase family AMD22_RS05010 PF00378 Enoyl-CoA hydratase/isomerase AMD22_RS05030 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD22_RS05035 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD22_RS05035 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD22_RS05040 PF18125 RlmM ferredoxin-like domain AMD22_RS05040 PF01728 FtsJ-like methyltransferase AMD22_RS05065 PF00892 EamA-like transporter family AMD22_RS05075 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMD22_RS05075 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD22_RS05090 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS05090 PF00072 Response regulator receiver domain AMD22_RS05095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS05095 PF00672 HAMP domain AMD22_RS05095 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS05095 PF00072 Response regulator receiver domain AMD22_RS05095 PF01627 Hpt domain AMD22_RS05095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD22_RS05100 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS05100 PF00072 Response regulator receiver domain AMD22_RS05110 PF01625 Peptide methionine sulfoxide reductase AMD22_RS05120 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMD22_RS05125 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD22_RS05125 PF14760 Rnk N-terminus AMD22_RS05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS05130 PF03466 LysR substrate binding domain AMD22_RS05135 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS05135 PF13192 Thioredoxin domain AMD22_RS05140 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD22_RS05140 PF00578 AhpC/TSA family AMD22_RS05145 PF05175 Methyltransferase small domain AMD22_RS05145 PF17827 PrmC N-terminal domain AMD22_RS05150 PF00561 alpha/beta hydrolase fold AMD22_RS05160 PF00293 NUDIX domain AMD22_RS05165 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD22_RS05165 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD22_RS05165 PF01612 3'-5' exonuclease AMD22_RS05165 PF00476 DNA polymerase family A AMD22_RS05195 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMD22_RS05195 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMD22_RS05195 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD22_RS05220 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD22_RS05225 PF02233 NAD(P) transhydrogenase beta subunit AMD22_RS05240 PF01063 Amino-transferase class IV AMD22_RS05245 PF04151 Bacterial pre-peptidase C-terminal domain AMD22_RS05245 PF00082 Subtilase family AMD22_RS05250 PF00082 Subtilase family AMD22_RS05250 PF04151 Bacterial pre-peptidase C-terminal domain AMD22_RS05255 PF00082 Subtilase family AMD22_RS05255 PF04151 Bacterial pre-peptidase C-terminal domain AMD22_RS05260 PF04073 Aminoacyl-tRNA editing domain AMD22_RS05280 PF03358 NADPH-dependent FMN reductase AMD22_RS05285 PF03631 Virulence factor BrkB AMD22_RS05290 PF08534 Redoxin AMD22_RS05295 PF00708 Acylphosphatase AMD22_RS05305 PF03976 Polyphosphate kinase 2 (PPK2) AMD22_RS05310 PF00994 Probable molybdopterin binding domain AMD22_RS05320 PF03462 PCRF domain AMD22_RS05320 PF00472 RF-1 domain AMD22_RS05325 PF01488 Shikimate / quinate 5-dehydrogenase AMD22_RS05325 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMD22_RS05325 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMD22_RS05335 PF03550 Outer membrane lipoprotein LolB AMD22_RS05340 PF08544 GHMP kinases C terminal AMD22_RS05340 PF00288 GHMP kinases N terminal domain AMD22_RS05350 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD22_RS05350 PF14572 Phosphoribosyl synthetase-associated domain AMD22_RS05355 PF01386 Ribosomal L25p family AMD22_RS05355 PF14693 Ribosomal protein TL5, C-terminal domain AMD22_RS05360 PF01195 Peptidyl-tRNA hydrolase AMD22_RS05365 PF06071 Protein of unknown function (DUF933) AMD22_RS05365 PF01926 50S ribosome-binding GTPase AMD22_RS05385 PF03144 Elongation factor Tu domain 2 AMD22_RS05385 PF00009 Elongation factor Tu GTP binding domain AMD22_RS05385 PF03143 Elongation factor Tu C-terminal domain AMD22_RS05395 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMD22_RS05400 PF02357 Transcription termination factor nusG AMD22_RS05400 PF00467 KOW motif AMD22_RS05405 PF00298 Ribosomal protein L11, RNA binding domain AMD22_RS05405 PF03946 Ribosomal protein L11, N-terminal domain AMD22_RS05410 PF00687 Ribosomal protein L1p/L10e family AMD22_RS05415 PF00466 Ribosomal protein L10 AMD22_RS05420 PF16320 Ribosomal protein L7/L12 dimerisation domain AMD22_RS05420 PF00542 Ribosomal protein L7/L12 C-terminal domain AMD22_RS05425 PF04560 RNA polymerase Rpb2, domain 7 AMD22_RS05425 PF04565 RNA polymerase Rpb2, domain 3 AMD22_RS05425 PF04561 RNA polymerase Rpb2, domain 2 AMD22_RS05425 PF00562 RNA polymerase Rpb2, domain 6 AMD22_RS05425 PF04563 RNA polymerase beta subunit AMD22_RS05425 PF10385 RNA polymerase beta subunit external 1 domain AMD22_RS05430 PF04997 RNA polymerase Rpb1, domain 1 AMD22_RS05430 PF00623 RNA polymerase Rpb1, domain 2 AMD22_RS05430 PF04983 RNA polymerase Rpb1, domain 3 AMD22_RS05430 PF05000 RNA polymerase Rpb1, domain 4 AMD22_RS05430 PF04998 RNA polymerase Rpb1, domain 5 AMD22_RS05435 PF00164 Ribosomal protein S12/S23 AMD22_RS05440 PF00177 Ribosomal protein S7p/S5e AMD22_RS05445 PF00679 Elongation factor G C-terminus AMD22_RS05445 PF03144 Elongation factor Tu domain 2 AMD22_RS05445 PF14492 Elongation Factor G, domain II AMD22_RS05445 PF03764 Elongation factor G, domain IV AMD22_RS05445 PF00009 Elongation factor Tu GTP binding domain AMD22_RS05450 PF03144 Elongation factor Tu domain 2 AMD22_RS05450 PF03143 Elongation factor Tu C-terminal domain AMD22_RS05450 PF00009 Elongation factor Tu GTP binding domain AMD22_RS05455 PF00338 Ribosomal protein S10p/S20e AMD22_RS05460 PF00297 Ribosomal protein L3 AMD22_RS05465 PF00573 Ribosomal protein L4/L1 family AMD22_RS05470 PF00276 Ribosomal protein L23 AMD22_RS05475 PF03947 Ribosomal Proteins L2, C-terminal domain AMD22_RS05475 PF00181 Ribosomal Proteins L2, RNA binding domain AMD22_RS05480 PF00203 Ribosomal protein S19 AMD22_RS05485 PF00237 Ribosomal protein L22p/L17e AMD22_RS05490 PF00189 Ribosomal protein S3, C-terminal domain AMD22_RS05490 PF07650 KH domain AMD22_RS05495 PF00252 Ribosomal protein L16p/L10e AMD22_RS05500 PF00831 Ribosomal L29 protein AMD22_RS05505 PF00366 Ribosomal protein S17 AMD22_RS05510 PF00238 Ribosomal protein L14p/L23e AMD22_RS05515 PF00467 KOW motif AMD22_RS05515 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMD22_RS05520 PF00281 Ribosomal protein L5 AMD22_RS05520 PF00673 ribosomal L5P family C-terminus AMD22_RS05525 PF00253 Ribosomal protein S14p/S29e AMD22_RS05530 PF00410 Ribosomal protein S8 AMD22_RS05535 PF00347 Ribosomal protein L6 AMD22_RS05540 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMD22_RS05545 PF00333 Ribosomal protein S5, N-terminal domain AMD22_RS05545 PF03719 Ribosomal protein S5, C-terminal domain AMD22_RS05550 PF00327 Ribosomal protein L30p/L7e AMD22_RS05555 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMD22_RS05560 PF00344 SecY translocase AMD22_RS05565 PF00416 Ribosomal protein S13/S18 AMD22_RS05570 PF00411 Ribosomal protein S11 AMD22_RS05575 PF00163 Ribosomal protein S4/S9 N-terminal domain AMD22_RS05575 PF01479 S4 domain AMD22_RS05580 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMD22_RS05580 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMD22_RS05580 PF01000 RNA polymerase Rpb3/RpoA insert domain AMD22_RS05585 PF01196 Ribosomal protein L17 AMD22_RS05590 PF02600 Disulfide bond formation protein DsbB AMD22_RS05605 PF01474 Class-II DAHP synthetase family AMD22_RS05615 PF01425 Amidase AMD22_RS05625 PF00679 Elongation factor G C-terminus AMD22_RS05625 PF03144 Elongation factor Tu domain 2 AMD22_RS05625 PF00009 Elongation factor Tu GTP binding domain AMD22_RS05630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD22_RS05635 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD22_RS05635 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD22_RS05640 PF00043 Glutathione S-transferase, C-terminal domain AMD22_RS05640 PF02798 Glutathione S-transferase, N-terminal domain AMD22_RS05650 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD22_RS05650 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS05655 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS05655 PF00107 Zinc-binding dehydrogenase AMD22_RS05660 PF00691 OmpA family AMD22_RS05660 PF05736 OprF membrane domain AMD22_RS05670 PF00849 RNA pseudouridylate synthase AMD22_RS05680 PF00155 Aminotransferase class I and II AMD22_RS05690 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS05695 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS05700 PF12857 TOBE-like domain AMD22_RS05700 PF17850 CysA C-terminal regulatory domain AMD22_RS05700 PF00005 ABC transporter AMD22_RS05710 PF00107 Zinc-binding dehydrogenase AMD22_RS05710 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS05725 PF05506 Domain of unknown function (DUF756) AMD22_RS05725 PF04185 Phosphoesterase family AMD22_RS05730 PF10459 Peptidase S46 AMD22_RS05735 PF10459 Peptidase S46 AMD22_RS05740 PF00300 Histidine phosphatase superfamily (branch 1) AMD22_RS05745 PF02875 Mur ligase family, glutamate ligase domain AMD22_RS05745 PF08245 Mur ligase middle domain AMD22_RS05760 PF00156 Phosphoribosyl transferase domain AMD22_RS05765 PF04305 Protein of unknown function (DUF455) AMD22_RS05785 PF00149 Calcineurin-like phosphoesterase AMD22_RS05790 PF01569 PAP2 superfamily AMD22_RS05795 PF00534 Glycosyl transferases group 1 AMD22_RS05795 PF13439 Glycosyltransferase Family 4 AMD22_RS05800 PF02541 Ppx/GppA phosphatase family AMD22_RS05805 PF13089 Polyphosphate kinase N-terminal domain AMD22_RS05805 PF17941 Polyphosphate kinase C-terminal domain 1 AMD22_RS05805 PF13090 Polyphosphate kinase C-terminal domain 2 AMD22_RS05805 PF02503 Polyphosphate kinase middle domain AMD22_RS05810 PF11808 Phosphate regulon sensor protein PhoR AMD22_RS05810 PF00989 PAS fold AMD22_RS05810 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS05810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS05815 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS05815 PF00072 Response regulator receiver domain AMD22_RS05820 PF13181 Tetratricopeptide repeat AMD22_RS05820 PF01435 Peptidase family M48 AMD22_RS05825 PF00462 Glutaredoxin AMD22_RS05835 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD22_RS05965 PF00665 Integrase core domain AMD22_RS05965 PF13276 HTH-like domain AMD22_RS05965 PF13333 Integrase core domain AMD22_RS05980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS05980 PF00989 PAS fold AMD22_RS05980 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS05990 PF05697 Bacterial trigger factor protein (TF) AMD22_RS05990 PF05698 Bacterial trigger factor protein (TF) C-terminus AMD22_RS05995 PF00574 Clp protease AMD22_RS06000 PF10431 C-terminal, D2-small domain, of ClpB protein AMD22_RS06000 PF07724 AAA domain (Cdc48 subfamily) AMD22_RS06000 PF06689 ClpX C4-type zinc finger AMD22_RS06005 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMD22_RS06005 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD22_RS06005 PF00004 ATPase family associated with various cellular activities (AAA) AMD22_RS06010 PF00216 Bacterial DNA-binding protein AMD22_RS06035 PF05257 CHAP domain AMD22_RS06035 PF01476 LysM domain AMD22_RS06040 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD22_RS06040 PF00753 Metallo-beta-lactamase superfamily AMD22_RS06050 PF00075 RNase H AMD22_RS06055 PF00929 Exonuclease AMD22_RS06075 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMD22_RS06085 PF12706 Beta-lactamase superfamily domain AMD22_RS06085 PF00753 Metallo-beta-lactamase superfamily AMD22_RS06090 PF06463 Molybdenum Cofactor Synthesis C AMD22_RS06090 PF04055 Radical SAM superfamily AMD22_RS06100 PF01967 MoaC family AMD22_RS06105 PF02597 ThiS family AMD22_RS06110 PF02391 MoaE protein AMD22_RS06160 PF12170 DNA polymerase III tau subunit V interacting with alpha AMD22_RS06160 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMD22_RS06160 PF12169 DNA polymerase III subunits gamma and tau domain III AMD22_RS06165 PF02575 YbaB/EbfC DNA-binding family AMD22_RS06170 PF13662 Toprim domain AMD22_RS06170 PF02132 RecR protein AMD22_RS06175 PF01230 HIT domain AMD22_RS06195 PF07726 ATPase family associated with various cellular activities (AAA) AMD22_RS06195 PF17863 AAA lid domain AMD22_RS06215 PF02545 Maf-like protein AMD22_RS06220 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMD22_RS06225 PF01783 Ribosomal L32p protein family AMD22_RS06230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD22_RS06230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD22_RS06240 PF00698 Acyl transferase domain AMD22_RS06250 PF00550 Phosphopantetheine attachment site AMD22_RS06255 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD22_RS06255 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD22_RS06260 PF00425 chorismate binding enzyme AMD22_RS06260 PF04715 Anthranilate synthase component I, N terminal region AMD22_RS06265 PF02618 YceG-like family AMD22_RS06270 PF09115 DNA polymerase III, delta subunit, C terminal AMD22_RS06290 PF00158 Sigma-54 interaction domain AMD22_RS06290 PF06506 Propionate catabolism activator AMD22_RS06290 PF02954 Bacterial regulatory protein, Fis family AMD22_RS06300 PF00285 Citrate synthase, C-terminal domain AMD22_RS06305 PF00330 Aconitase family (aconitate hydratase) AMD22_RS06305 PF00694 Aconitase C-terminal domain AMD22_RS06310 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AMD22_RS06315 PF04303 PrpF protein AMD22_RS06320 PF00593 TonB dependent receptor AMD22_RS06320 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS06330 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AMD22_RS06330 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AMD22_RS06330 PF17962 Bacterial macroglobulin domain 6 AMD22_RS06330 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AMD22_RS06330 PF01835 MG2 domain AMD22_RS06330 PF00207 Alpha-2-macroglobulin family AMD22_RS06330 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AMD22_RS06330 PF07703 Alpha-2-macroglobulin bait region domain AMD22_RS06345 PF00912 Transglycosylase AMD22_RS06345 PF06832 Penicillin-Binding Protein C-terminus Family AMD22_RS06345 PF00905 Penicillin binding protein transpeptidase domain AMD22_RS06355 PF08534 Redoxin AMD22_RS06365 PF00226 DnaJ domain AMD22_RS06365 PF01556 DnaJ C terminal domain AMD22_RS06370 PF00072 Response regulator receiver domain AMD22_RS06375 PF01145 SPFH domain / Band 7 family AMD22_RS06375 PF12221 Bacterial membrane protein N terminal AMD22_RS06380 PF01145 SPFH domain / Band 7 family AMD22_RS06390 PF00709 Adenylosuccinate synthetase AMD22_RS06395 PF01433 Peptidase family M1 domain AMD22_RS06395 PF11838 ERAP1-like C-terminal domain AMD22_RS06410 PF00440 Bacterial regulatory proteins, tetR family AMD22_RS06475 PF00300 Histidine phosphatase superfamily (branch 1) AMD22_RS06475 PF13456 Reverse transcriptase-like AMD22_RS06480 PF01256 Carbohydrate kinase AMD22_RS06490 PF00723 Glycosyl hydrolases family 15 AMD22_RS06500 PF07971 Glycosyl hydrolase family 92 AMD22_RS06500 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD22_RS06520 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS06540 PF17755 UvrA DNA-binding domain AMD22_RS06545 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD22_RS06545 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD22_RS06550 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD22_RS06550 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD22_RS06555 PF01799 [2Fe-2S] binding domain AMD22_RS06555 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD22_RS06590 PF01726 LexA DNA binding domain AMD22_RS06590 PF00717 Peptidase S24-like AMD22_RS06605 PF02811 PHP domain AMD22_RS06605 PF14579 Helix-hairpin-helix motif AMD22_RS06605 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD22_RS06605 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD22_RS06610 PF00326 Prolyl oligopeptidase family AMD22_RS06620 PF03169 OPT oligopeptide transporter protein AMD22_RS06635 PF00326 Prolyl oligopeptidase family AMD22_RS06635 PF07676 WD40-like Beta Propeller Repeat AMD22_RS06635 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD22_RS06650 PF02311 AraC-like ligand binding domain AMD22_RS06650 PF12833 Helix-turn-helix domain AMD22_RS06665 PF18011 C-terminal domain found in long catalases AMD22_RS06665 PF06628 Catalase-related immune-responsive AMD22_RS06665 PF00199 Catalase AMD22_RS06670 PF00248 Aldo/keto reductase family AMD22_RS06675 PF00135 Carboxylesterase family AMD22_RS06680 PF02347 Glycine cleavage system P-protein AMD22_RS06685 PF07690 Major Facilitator Superfamily AMD22_RS06700 PF08019 Phosphoethanolamine transferase EptA/EptB AMD22_RS06700 PF00884 Sulfatase AMD22_RS06715 PF00072 Response regulator receiver domain AMD22_RS06715 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS06720 PF08521 Two-component sensor kinase N-terminal AMD22_RS06720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS06720 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS06730 PF03776 Septum formation topological specificity factor MinE AMD22_RS06735 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD22_RS06740 PF03775 Septum formation inhibitor MinC, C-terminal domain AMD22_RS06740 PF05209 Septum formation inhibitor MinC, N-terminal domain AMD22_RS06755 PF07730 Histidine kinase AMD22_RS06760 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS06760 PF00072 Response regulator receiver domain AMD22_RS06775 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD22_RS06800 PF02222 ATP-grasp domain AMD22_RS06810 PF04376 Arginine-tRNA-protein transferase, N terminus AMD22_RS06810 PF04377 Arginine-tRNA-protein transferase, C terminus AMD22_RS06835 PF00378 Enoyl-CoA hydratase/isomerase AMD22_RS06850 PF17760 UvrA interaction domain AMD22_RS06850 PF17755 UvrA DNA-binding domain AMD22_RS06850 PF00005 ABC transporter AMD22_RS06855 PF00829 Ribosomal prokaryotic L21 protein AMD22_RS06860 PF01016 Ribosomal L27 protein AMD22_RS06865 PF01018 GTP1/OBG AMD22_RS06865 PF01926 50S ribosome-binding GTPase AMD22_RS06870 PF01649 Ribosomal protein S20 AMD22_RS06875 PF03023 Lipid II flippase MurJ AMD22_RS06880 PF06574 FAD synthetase AMD22_RS06880 PF01687 Riboflavin kinase AMD22_RS06885 PF08264 Anticodon-binding domain of tRNA AMD22_RS06885 PF06827 Zinc finger found in FPG and IleRS AMD22_RS06885 PF00133 tRNA synthetases class I (I, L, M and V) AMD22_RS06890 PF01252 Signal peptidase (SPase) II AMD22_RS06895 PF02401 LytB protein AMD22_RS06905 PF06481 COX Aromatic Rich Motif AMD22_RS06905 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD22_RS06910 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD22_RS06915 PF00510 Cytochrome c oxidase subunit III AMD22_RS06920 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMD22_RS06930 PF18073 Rubredoxin metal binding domain AMD22_RS06935 PF05656 Protein of unknown function (DUF805) AMD22_RS06945 PF12833 Helix-turn-helix domain AMD22_RS06950 PF00183 Hsp90 protein AMD22_RS06950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS06960 PF08678 Rsbr N terminal AMD22_RS06960 PF01740 STAS domain AMD22_RS06965 PF01740 STAS domain AMD22_RS06970 PF13581 Histidine kinase-like ATPase domain AMD22_RS06980 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD22_RS06980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS06980 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS06980 PF01627 Hpt domain AMD22_RS06980 PF00072 Response regulator receiver domain AMD22_RS06980 PF00672 HAMP domain AMD22_RS06985 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS06985 PF08448 PAS fold AMD22_RS06985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS06985 PF00072 Response regulator receiver domain AMD22_RS06985 PF13188 PAS domain AMD22_RS06990 PF04616 Glycosyl hydrolases family 43 AMD22_RS06990 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD22_RS06995 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS06995 PF00593 TonB dependent receptor AMD22_RS07000 PF00085 Thioredoxin AMD22_RS07005 PF07237 Protein of unknown function (DUF1428) AMD22_RS07010 PF13493 Domain of unknown function (DUF4118) AMD22_RS07010 PF13492 GAF domain AMD22_RS07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS07010 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD22_RS07010 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS07015 PF01339 CheB methylesterase AMD22_RS07020 PF03705 CheR methyltransferase, all-alpha domain AMD22_RS07020 PF01739 CheR methyltransferase, SAM binding domain AMD22_RS07025 PF00072 Response regulator receiver domain AMD22_RS07025 PF01627 Hpt domain AMD22_RS07025 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS07025 PF00672 HAMP domain AMD22_RS07025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS07025 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD22_RS07030 PF00072 Response regulator receiver domain AMD22_RS07030 PF13426 PAS domain AMD22_RS07030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS07035 PF00072 Response regulator receiver domain AMD22_RS07040 PF00722 Glycosyl hydrolases family 16 AMD22_RS07045 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMD22_RS07055 PF01263 Aldose 1-epimerase AMD22_RS07060 PF01578 Cytochrome C assembly protein AMD22_RS07065 PF02978 Signal peptide binding domain AMD22_RS07065 PF02881 SRP54-type protein, helical bundle domain AMD22_RS07065 PF00448 SRP54-type protein, GTPase domain AMD22_RS07070 PF03060 Nitronate monooxygenase AMD22_RS07075 PF01063 Amino-transferase class IV AMD22_RS07080 PF00886 Ribosomal protein S16 AMD22_RS07085 PF05239 PRC-barrel domain AMD22_RS07085 PF01782 RimM N-terminal domain AMD22_RS07090 PF01746 tRNA (Guanine-1)-methyltransferase AMD22_RS07095 PF01245 Ribosomal protein L19 AMD22_RS07120 PF01479 S4 domain AMD22_RS07125 PF00141 Peroxidase AMD22_RS07135 PF05188 MutS domain II AMD22_RS07135 PF01624 MutS domain I AMD22_RS07135 PF00488 MutS domain V AMD22_RS07135 PF05190 MutS family domain IV AMD22_RS07135 PF05192 MutS domain III AMD22_RS07145 PF05593 RHS Repeat AMD22_RS07145 PF03527 RHS protein AMD22_RS07165 PF16355 Domain of unknown function (DUF4982) AMD22_RS07165 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD22_RS07165 PF00703 Glycosyl hydrolases family 2 AMD22_RS07165 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD22_RS07165 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD22_RS07170 PF07745 Glycosyl hydrolase family 53 AMD22_RS07180 PF01381 Helix-turn-helix AMD22_RS07180 PF06114 IrrE N-terminal-like domain AMD22_RS07180 PF09856 Predicted transcriptional regulator (DUF2083) AMD22_RS07185 PF00171 Aldehyde dehydrogenase family AMD22_RS07190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD22_RS07190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD22_RS07190 PF02770 Acyl-CoA dehydrogenase, middle domain AMD22_RS07195 PF00378 Enoyl-CoA hydratase/isomerase AMD22_RS07200 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD22_RS07200 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD22_RS07200 PF00378 Enoyl-CoA hydratase/isomerase AMD22_RS07205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD22_RS07205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD22_RS07210 PF01545 Cation efflux family AMD22_RS07215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD22_RS07215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD22_RS07215 PF00378 Enoyl-CoA hydratase/isomerase AMD22_RS07220 PF08281 Sigma-70, region 4 AMD22_RS07220 PF04542 Sigma-70 region 2 AMD22_RS07230 PF13180 PDZ domain AMD22_RS07235 PF00009 Elongation factor Tu GTP binding domain AMD22_RS07235 PF00679 Elongation factor G C-terminus AMD22_RS07235 PF06421 GTP-binding protein LepA C-terminus AMD22_RS07235 PF03144 Elongation factor Tu domain 2 AMD22_RS07240 PF10502 Signal peptidase, peptidase S26 AMD22_RS07250 PF14622 Ribonuclease-III-like AMD22_RS07250 PF00035 Double-stranded RNA binding motif AMD22_RS07255 PF07650 KH domain AMD22_RS07255 PF01926 50S ribosome-binding GTPase AMD22_RS07260 PF11967 Recombination protein O N terminal AMD22_RS07260 PF02565 Recombination protein O C terminal AMD22_RS07270 PF05958 tRNA (Uracil-5-)-methyltransferase AMD22_RS07275 PF01928 CYTH domain AMD22_RS07280 PF01323 DSBA-like thioredoxin domain AMD22_RS07285 PF01593 Flavin containing amine oxidoreductase AMD22_RS07290 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMD22_RS07295 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD22_RS07300 PF00156 Phosphoribosyl transferase domain AMD22_RS07305 PF01048 Phosphorylase superfamily AMD22_RS07310 PF00313 'Cold-shock' DNA-binding domain AMD22_RS07315 PF01494 FAD binding domain AMD22_RS07325 PF00270 DEAD/DEAH box helicase AMD22_RS07325 PF08494 DEAD/H associated AMD22_RS07325 PF00271 Helicase conserved C-terminal domain AMD22_RS07330 PF04679 ATP dependent DNA ligase C terminal region AMD22_RS07330 PF01068 ATP dependent DNA ligase domain AMD22_RS07330 PF04675 DNA ligase N terminus AMD22_RS07340 PF04675 DNA ligase N terminus AMD22_RS07340 PF01068 ATP dependent DNA ligase domain AMD22_RS07340 PF04679 ATP dependent DNA ligase C terminal region AMD22_RS07355 PF00072 Response regulator receiver domain AMD22_RS07355 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS07370 PF00108 Thiolase, N-terminal domain AMD22_RS07370 PF02803 Thiolase, C-terminal domain AMD22_RS07375 PF12951 Passenger-associated-transport-repeat AMD22_RS07375 PF00082 Subtilase family AMD22_RS07375 PF03797 Autotransporter beta-domain AMD22_RS07380 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD22_RS07380 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMD22_RS07390 PF01863 Protein of unknown function DUF45 AMD22_RS07395 PF07043 Protein of unknown function (DUF1328) AMD22_RS07405 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD22_RS07430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD22_RS07440 PF08274 PhnA Zinc-Ribbon AMD22_RS07440 PF03831 PhnA domain AMD22_RS07445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD22_RS07450 PF07690 Major Facilitator Superfamily AMD22_RS07485 PF09924 Uncharacterised conserved protein (DUF2156) AMD22_RS07485 PF03706 Lysylphosphatidylglycerol synthase TM region AMD22_RS07495 PF01042 Endoribonuclease L-PSP AMD22_RS07540 PF04545 Sigma-70, region 4 AMD22_RS07540 PF04542 Sigma-70 region 2 AMD22_RS07560 PF04060 Putative Fe-S cluster AMD22_RS07570 PF09334 tRNA synthetases class I (M) AMD22_RS07570 PF01588 Putative tRNA binding domain AMD22_RS07585 PF00005 ABC transporter AMD22_RS07585 PF13732 Domain of unknown function (DUF4162) AMD22_RS07590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD22_RS07595 PF00324 Amino acid permease AMD22_RS07600 PF02574 Homocysteine S-methyltransferase AMD22_RS07610 PF02592 Putative vitamin uptake transporter AMD22_RS07630 PF03551 Transcriptional regulator PadR-like family AMD22_RS07650 PF03653 Uncharacterised protein family (UPF0093) AMD22_RS07665 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMD22_RS07670 PF02811 PHP domain AMD22_RS07670 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD22_RS07670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD22_RS07670 PF14579 Helix-hairpin-helix motif AMD22_RS07670 PF01336 OB-fold nucleic acid binding domain AMD22_RS07675 PF01351 Ribonuclease HII AMD22_RS07680 PF02684 Lipid-A-disaccharide synthetase AMD22_RS07685 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMD22_RS07685 PF00132 Bacterial transferase hexapeptide (six repeats) AMD22_RS07690 PF07977 FabA-like domain AMD22_RS07695 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMD22_RS07695 PF00132 Bacterial transferase hexapeptide (six repeats) AMD22_RS07705 PF01103 Surface antigen AMD22_RS07705 PF07244 Surface antigen variable number repeat AMD22_RS07710 PF02163 Peptidase family M50 AMD22_RS07710 PF17820 PDZ domain AMD22_RS07715 PF13288 DXP reductoisomerase C-terminal domain AMD22_RS07715 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMD22_RS07715 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMD22_RS07725 PF01255 Putative undecaprenyl diphosphate synthase AMD22_RS07730 PF01765 Ribosome recycling factor AMD22_RS07735 PF00696 Amino acid kinase family AMD22_RS07740 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS07740 PF00072 Response regulator receiver domain AMD22_RS07745 PF00889 Elongation factor TS AMD22_RS07750 PF00318 Ribosomal protein S2 AMD22_RS07785 PF00557 Metallopeptidase family M24 AMD22_RS07790 PF08335 GlnD PII-uridylyltransferase AMD22_RS07790 PF01909 Nucleotidyltransferase domain AMD22_RS07790 PF01966 HD domain AMD22_RS07795 PF14602 Hexapeptide repeat of succinyl-transferase AMD22_RS07795 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMD22_RS07795 PF00132 Bacterial transferase hexapeptide (six repeats) AMD22_RS07800 PF03960 ArsC family AMD22_RS07805 PF07687 Peptidase dimerisation domain AMD22_RS07805 PF01546 Peptidase family M20/M25/M40 AMD22_RS07810 PF00733 Asparagine synthase AMD22_RS07810 PF13537 Glutamine amidotransferase domain AMD22_RS07820 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS07820 PF00593 TonB dependent receptor AMD22_RS07835 PF00210 Ferritin-like domain AMD22_RS07840 PF05724 Thiopurine S-methyltransferase (TPMT) AMD22_RS07850 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD22_RS07850 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD22_RS07865 PF02321 Outer membrane efflux protein AMD22_RS07870 PF00529 HlyD membrane-fusion protein of T1SS AMD22_RS07870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS07875 PF07690 Major Facilitator Superfamily AMD22_RS07885 PF14310 Fibronectin type III-like domain AMD22_RS07885 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD22_RS07885 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD22_RS07895 PF00854 POT family AMD22_RS07920 PF12802 MarR family AMD22_RS07925 PF01432 Peptidase family M3 AMD22_RS07930 PF00255 Glutathione peroxidase AMD22_RS07935 PF00970 Oxidoreductase FAD-binding domain AMD22_RS07935 PF00175 Oxidoreductase NAD-binding domain AMD22_RS07940 PF00005 ABC transporter AMD22_RS07945 PF05681 Fumarate hydratase (Fumerase) AMD22_RS07945 PF05683 Fumarase C-terminus AMD22_RS07955 PF00484 Carbonic anhydrase AMD22_RS07960 PF02253 Phospholipase A1 AMD22_RS07970 PF00313 'Cold-shock' DNA-binding domain AMD22_RS07985 PF00899 ThiF family AMD22_RS07990 PF01026 TatD related DNase AMD22_RS08005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD22_RS08005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD22_RS08005 PF02770 Acyl-CoA dehydrogenase, middle domain AMD22_RS08015 PF02798 Glutathione S-transferase, N-terminal domain AMD22_RS08015 PF00043 Glutathione S-transferase, C-terminal domain AMD22_RS08025 PF00733 Asparagine synthase AMD22_RS08025 PF13537 Glutamine amidotransferase domain AMD22_RS08030 PF03358 NADPH-dependent FMN reductase AMD22_RS08035 PF03796 DnaB-like helicase C terminal domain AMD22_RS08035 PF00772 DnaB-like helicase N terminal domain AMD22_RS08040 PF03441 FAD binding domain of DNA photolyase AMD22_RS08040 PF00875 DNA photolyase AMD22_RS08045 PF05736 OprF membrane domain AMD22_RS08045 PF00691 OmpA family AMD22_RS08050 PF03466 LysR substrate binding domain AMD22_RS08050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS08065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS08065 PF00529 HlyD membrane-fusion protein of T1SS AMD22_RS08070 PF00873 AcrB/AcrD/AcrF family AMD22_RS08075 PF00106 short chain dehydrogenase AMD22_RS08080 PF02321 Outer membrane efflux protein AMD22_RS08085 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS08095 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS08160 PF01527 Transposase AMD22_RS08195 PF00082 Subtilase family AMD22_RS08200 PF01668 SmpB protein AMD22_RS08205 PF03364 Polyketide cyclase / dehydrase and lipid transport AMD22_RS08210 PF03658 RnfH family Ubiquitin AMD22_RS08215 PF04355 SmpA / OmlA family AMD22_RS08220 PF01475 Ferric uptake regulator family AMD22_RS08225 PF02463 RecF/RecN/SMC N terminal domain AMD22_RS08230 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMD22_RS08230 PF01628 HrcA protein C terminal domain AMD22_RS08235 PF01025 GrpE AMD22_RS08240 PF00012 Hsp70 protein AMD22_RS08245 PF01556 DnaJ C terminal domain AMD22_RS08245 PF00684 DnaJ central domain AMD22_RS08245 PF00226 DnaJ domain AMD22_RS08250 PF08543 Phosphomethylpyrimidine kinase AMD22_RS08275 PF00664 ABC transporter transmembrane region AMD22_RS08275 PF00005 ABC transporter AMD22_RS08275 PF03412 Peptidase C39 family AMD22_RS08280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS08280 PF03466 LysR substrate binding domain AMD22_RS08285 PF00664 ABC transporter transmembrane region AMD22_RS08285 PF00005 ABC transporter AMD22_RS08290 PF01205 Uncharacterized protein family UPF0029 AMD22_RS08295 PF03641 Possible lysine decarboxylase AMD22_RS08300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS08300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD22_RS08305 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD22_RS08305 PF00364 Biotin-requiring enzyme AMD22_RS08305 PF02817 e3 binding domain AMD22_RS08310 PF00676 Dehydrogenase E1 component AMD22_RS08310 PF16078 2-oxoglutarate dehydrogenase N-terminus AMD22_RS08310 PF16870 2-oxoglutarate dehydrogenase C-terminal AMD22_RS08310 PF02779 Transketolase, pyrimidine binding domain AMD22_RS08320 PF08007 Cupin superfamily protein AMD22_RS08330 PF08328 Adenylosuccinate lyase C-terminal AMD22_RS08330 PF00206 Lyase AMD22_RS08340 PF00571 CBS domain AMD22_RS08340 PF03471 Transporter associated domain AMD22_RS08340 PF01595 Cyclin M transmembrane N-terminal domain AMD22_RS08345 PF00206 Lyase AMD22_RS08345 PF10415 Fumarase C C-terminus AMD22_RS08370 PF00005 ABC transporter AMD22_RS08375 PF00392 Bacterial regulatory proteins, gntR family AMD22_RS08380 PF00255 Glutathione peroxidase AMD22_RS08385 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD22_RS08385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD22_RS08390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD22_RS08390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD22_RS08390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD22_RS08395 PF04102 SlyX AMD22_RS08410 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS08415 PF07690 Major Facilitator Superfamily AMD22_RS08420 PF00294 pfkB family carbohydrate kinase AMD22_RS08430 PF02607 B12 binding domain AMD22_RS08430 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMD22_RS08430 PF02574 Homocysteine S-methyltransferase AMD22_RS08430 PF00809 Pterin binding enzyme AMD22_RS08430 PF02310 B12 binding domain AMD22_RS08435 PF02574 Homocysteine S-methyltransferase AMD22_RS08435 PF00809 Pterin binding enzyme AMD22_RS08440 PF01209 ubiE/COQ5 methyltransferase family AMD22_RS08445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD22_RS08445 PF02770 Acyl-CoA dehydrogenase, middle domain AMD22_RS08445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD22_RS08460 PF00773 RNB domain AMD22_RS08460 PF08206 Ribonuclease B OB domain AMD22_RS08460 PF08461 Ribonuclease R winged-helix domain AMD22_RS08460 PF17876 Cold shock domain AMD22_RS08460 PF00575 S1 RNA binding domain AMD22_RS08470 PF00588 SpoU rRNA Methylase family AMD22_RS08470 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD22_RS08475 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS08480 PF00929 Exonuclease AMD22_RS08490 PF01895 PhoU domain AMD22_RS08495 PF00005 ABC transporter AMD22_RS08500 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS08505 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS08510 PF12849 PBP superfamily domain AMD22_RS08515 PF12849 PBP superfamily domain AMD22_RS08530 PF00484 Carbonic anhydrase AMD22_RS08535 PF00916 Sulfate permease family AMD22_RS08535 PF01740 STAS domain AMD22_RS08540 PF10576 Iron-sulfur binding domain of endonuclease III AMD22_RS08540 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD22_RS08540 PF00633 Helix-hairpin-helix motif AMD22_RS08550 PF00378 Enoyl-CoA hydratase/isomerase AMD22_RS08555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD22_RS08555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD22_RS08560 PF00293 NUDIX domain AMD22_RS08565 PF00581 Rhodanese-like domain AMD22_RS08595 PF00005 ABC transporter AMD22_RS08595 PF16326 ABC transporter C-terminal domain AMD22_RS08595 PF12848 ABC transporter AMD22_RS08600 PF01170 Putative RNA methylase family UPF0020 AMD22_RS08600 PF02926 THUMP domain AMD22_RS08600 PF10672 S-adenosylmethionine-dependent methyltransferase AMD22_RS08605 PF01513 ATP-NAD kinase AMD22_RS08630 PF08411 Exonuclease C-terminal AMD22_RS08630 PF00929 Exonuclease AMD22_RS08635 PF01494 FAD binding domain AMD22_RS08640 PF00266 Aminotransferase class-V AMD22_RS08650 PF06052 3-hydroxyanthranilic acid dioxygenase AMD22_RS08655 PF00484 Carbonic anhydrase AMD22_RS08700 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS08700 PF00072 Response regulator receiver domain AMD22_RS08715 PF04299 Putative FMN-binding domain AMD22_RS08735 PF01336 OB-fold nucleic acid binding domain AMD22_RS08735 PF00152 tRNA synthetases class II (D, K and N) AMD22_RS08740 PF01521 Iron-sulphur cluster biosynthesis AMD22_RS08745 PF01250 Ribosomal protein S6 AMD22_RS08750 PF01084 Ribosomal protein S18 AMD22_RS08755 PF01281 Ribosomal protein L9, N-terminal domain AMD22_RS08755 PF03948 Ribosomal protein L9, C-terminal domain AMD22_RS08760 PF02463 RecF/RecN/SMC N terminal domain AMD22_RS08765 PF04354 ZipA, C-terminal FtsZ-binding domain AMD22_RS08775 PF00155 Aminotransferase class I and II AMD22_RS08780 PF03120 NAD-dependent DNA ligase OB-fold domain AMD22_RS08780 PF01653 NAD-dependent DNA ligase adenylation domain AMD22_RS08780 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMD22_RS08780 PF00533 BRCA1 C Terminus (BRCT) domain AMD22_RS08780 PF12826 Helix-hairpin-helix motif AMD22_RS08785 PF00152 tRNA synthetases class II (D, K and N) AMD22_RS08795 PF01008 Initiation factor 2 subunit family AMD22_RS08800 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD22_RS08800 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD22_RS08805 PF13360 PQQ-like domain AMD22_RS08815 PF17391 Urocanase N-terminal domain AMD22_RS08815 PF17392 Urocanase C-terminal domain AMD22_RS08815 PF01175 Urocanase Rossmann-like domain AMD22_RS08825 PF00221 Aromatic amino acid lyase AMD22_RS08830 PF07969 Amidohydrolase family AMD22_RS08845 PF07702 UTRA domain AMD22_RS08845 PF00392 Bacterial regulatory proteins, gntR family AMD22_RS08875 PF01794 Ferric reductase like transmembrane component AMD22_RS08880 PF00174 Oxidoreductase molybdopterin binding domain AMD22_RS08885 PF00266 Aminotransferase class-V AMD22_RS08890 PF00800 Prephenate dehydratase AMD22_RS08890 PF01817 Chorismate mutase type II AMD22_RS08890 PF01842 ACT domain AMD22_RS08895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD22_RS08905 PF03544 Gram-negative bacterial TonB protein C-terminal AMD22_RS08910 PF02403 Seryl-tRNA synthetase N-terminal domain AMD22_RS08910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD22_RS08915 PF02525 Flavodoxin-like fold AMD22_RS08920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS08920 PF03466 LysR substrate binding domain AMD22_RS08935 PF00672 HAMP domain AMD22_RS08935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS08935 PF02203 Tar ligand binding domain homologue AMD22_RS08940 PF01494 FAD binding domain AMD22_RS08960 PF13188 PAS domain AMD22_RS08960 PF08448 PAS fold AMD22_RS08960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS08960 PF00072 Response regulator receiver domain AMD22_RS08960 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS08965 PF00072 Response regulator receiver domain AMD22_RS08965 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD22_RS08965 PF01627 Hpt domain AMD22_RS08965 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS08965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS08965 PF00672 HAMP domain AMD22_RS08970 PF06745 KaiC AMD22_RS08975 PF00072 Response regulator receiver domain AMD22_RS08975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS08975 PF13426 PAS domain AMD22_RS08985 PF03918 Cytochrome C biogenesis protein AMD22_RS08990 PF08534 Redoxin AMD22_RS08995 PF01578 Cytochrome C assembly protein AMD22_RS08995 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD22_RS09000 PF03100 CcmE AMD22_RS09010 PF01578 Cytochrome C assembly protein AMD22_RS09015 PF00082 Subtilase family AMD22_RS09025 PF04542 Sigma-70 region 2 AMD22_RS09025 PF08281 Sigma-70, region 4 AMD22_RS09040 PF00034 Cytochrome c AMD22_RS09055 PF05523 WxcM-like, C-terminal AMD22_RS09075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD22_RS09080 PF01943 Polysaccharide biosynthesis protein AMD22_RS09085 PF00535 Glycosyl transferase family 2 AMD22_RS09100 PF08241 Methyltransferase domain AMD22_RS09120 PF13579 Glycosyl transferase 4-like domain AMD22_RS09120 PF00534 Glycosyl transferases group 1 AMD22_RS09135 PF00005 ABC transporter AMD22_RS09140 PF00664 ABC transporter transmembrane region AMD22_RS09140 PF00005 ABC transporter AMD22_RS09145 PF07690 Major Facilitator Superfamily AMD22_RS09150 PF00296 Luciferase-like monooxygenase AMD22_RS09165 PF01595 Cyclin M transmembrane N-terminal domain AMD22_RS09165 PF00571 CBS domain AMD22_RS09165 PF03471 Transporter associated domain AMD22_RS09175 PF01384 Phosphate transporter family AMD22_RS09190 PF01751 Toprim domain AMD22_RS09190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS09190 PF00986 DNA gyrase B subunit, carboxyl terminus AMD22_RS09190 PF00204 DNA gyrase B AMD22_RS09200 PF06418 CTP synthase N-terminus AMD22_RS09200 PF00117 Glutamine amidotransferase class-I AMD22_RS09205 PF00793 DAHP synthetase I family AMD22_RS09215 PF03952 Enolase, N-terminal domain AMD22_RS09215 PF00113 Enolase, C-terminal TIM barrel domain AMD22_RS09220 PF04977 Septum formation initiator AMD22_RS09225 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMD22_RS09230 PF02542 YgbB family AMD22_RS09235 PF01142 tRNA pseudouridine synthase D (TruD) AMD22_RS09240 PF01713 Smr domain AMD22_RS09245 PF01975 Survival protein SurE AMD22_RS09255 PF09335 SNARE associated Golgi protein AMD22_RS09260 PF01476 LysM domain AMD22_RS09260 PF01551 Peptidase family M23 AMD22_RS09265 PF04430 Protein of unknown function (DUF498/DUF598) AMD22_RS09270 PF01985 CRS1 / YhbY (CRM) domain AMD22_RS09275 PF01728 FtsJ-like methyltransferase AMD22_RS09280 PF01434 Peptidase family M41 AMD22_RS09280 PF00004 ATPase family associated with various cellular activities (AAA) AMD22_RS09280 PF06480 FtsH Extracellular AMD22_RS09280 PF17862 AAA+ lid domain AMD22_RS09285 PF00809 Pterin binding enzyme AMD22_RS09295 PF17209 Hfq protein AMD22_RS09300 PF01926 50S ribosome-binding GTPase AMD22_RS09300 PF13167 GTP-binding GTPase N-terminal AMD22_RS09300 PF16360 GTP-binding GTPase Middle Region AMD22_RS09305 PF02464 Competence-damaged protein AMD22_RS09310 PF03109 ABC1 family AMD22_RS09315 PF00717 Peptidase S24-like AMD22_RS09315 PF01726 LexA DNA binding domain AMD22_RS09320 PF00154 recA bacterial DNA recombination protein AMD22_RS09325 PF02631 RecX family AMD22_RS09330 PF02272 DHHA1 domain AMD22_RS09330 PF01411 tRNA synthetases class II (A) AMD22_RS09330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD22_RS09335 PF02599 Global regulator protein family AMD22_RS09345 PF13426 PAS domain AMD22_RS09345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS09345 PF08447 PAS fold AMD22_RS09350 PF02678 Pirin AMD22_RS09350 PF17954 Quercetinase C-terminal cupin domain AMD22_RS09360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS09360 PF03466 LysR substrate binding domain AMD22_RS09385 PF08543 Phosphomethylpyrimidine kinase AMD22_RS09385 PF02581 Thiamine monophosphate synthase AMD22_RS09400 PF02562 PhoH-like protein AMD22_RS09400 PF13638 PIN domain AMD22_RS09405 PF00578 AhpC/TSA family AMD22_RS09420 PF00701 Dihydrodipicolinate synthetase family AMD22_RS09430 PF11953 Domain of unknown function (DUF3470) AMD22_RS09430 PF00037 4Fe-4S binding domain AMD22_RS09435 PF05035 2-keto-3-deoxy-galactonokinase AMD22_RS09440 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD22_RS09445 PF13378 Enolase C-terminal domain-like AMD22_RS09445 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD22_RS09450 PF01081 KDPG and KHG aldolase AMD22_RS09460 PF03466 LysR substrate binding domain AMD22_RS09460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS09475 PF03442 Carbohydrate binding domain X2 AMD22_RS09475 PF00942 Cellulose binding domain AMD22_RS09490 PF16338 Domain of unknown function (DUF4968) AMD22_RS09490 PF17137 Domain of unknown function (DUF5110) AMD22_RS09490 PF01055 Glycosyl hydrolases family 31 AMD22_RS09500 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD22_RS09500 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD22_RS09510 PF00083 Sugar (and other) transporter AMD22_RS09520 PF01520 N-acetylmuramoyl-L-alanine amidase AMD22_RS09525 PF02649 Type I GTP cyclohydrolase folE2 AMD22_RS09535 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD22_RS09535 PF12626 Polymerase A arginine-rich C-terminus AMD22_RS09535 PF01743 Poly A polymerase head domain AMD22_RS09540 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD22_RS09545 PF02548 Ketopantoate hydroxymethyltransferase AMD22_RS09550 PF02569 Pantoate-beta-alanine ligase AMD22_RS09555 PF02261 Aspartate decarboxylase AMD22_RS09560 PF00342 Phosphoglucose isomerase AMD22_RS09580 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD22_RS09580 PF14310 Fibronectin type III-like domain AMD22_RS09580 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD22_RS09585 PF00474 Sodium:solute symporter family AMD22_RS09590 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS09590 PF00360 Phytochrome region AMD22_RS09590 PF00563 EAL domain AMD22_RS09590 PF01590 GAF domain AMD22_RS09595 PF02013 Cellulose or protein binding domain AMD22_RS09595 PF00150 Cellulase (glycosyl hydrolase family 5) AMD22_RS09600 PF00072 Response regulator receiver domain AMD22_RS09610 PF04551 GcpE protein AMD22_RS09615 PF01569 PAP2 superfamily AMD22_RS09620 PF07690 Major Facilitator Superfamily AMD22_RS09625 PF01177 Asp/Glu/Hydantoin racemase AMD22_RS09630 PF00892 EamA-like transporter family AMD22_RS09635 PF01565 FAD binding domain AMD22_RS09635 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMD22_RS09640 PF01180 Dihydroorotate dehydrogenase AMD22_RS09655 PF00171 Aldehyde dehydrogenase family AMD22_RS09670 PF00535 Glycosyl transferase family 2 AMD22_RS09675 PF14883 Hypothetical glycosyl hydrolase family 13 AMD22_RS09675 PF01522 Polysaccharide deacetylase AMD22_RS09685 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD22_RS09685 PF08479 POTRA domain, ShlB-type AMD22_RS09685 PF17287 POTRA domain AMD22_RS09690 PF04829 Pre-toxin domain with VENN motif AMD22_RS09690 PF05594 Haemagluttinin repeat AMD22_RS09690 PF13332 Hemagglutinin repeat AMD22_RS09695 PF04829 Pre-toxin domain with VENN motif AMD22_RS09695 PF05594 Haemagluttinin repeat AMD22_RS09695 PF13332 Hemagglutinin repeat AMD22_RS09700 PF05860 haemagglutination activity domain AMD22_RS09700 PF13332 Hemagglutinin repeat AMD22_RS09700 PF13018 Extended Signal Peptide of Type V secretion system AMD22_RS09700 PF05594 Haemagluttinin repeat AMD22_RS09700 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain AMD22_RS09710 PF01842 ACT domain AMD22_RS09710 PF00696 Amino acid kinase family AMD22_RS09710 PF00742 Homoserine dehydrogenase AMD22_RS09710 PF03447 Homoserine dehydrogenase, NAD binding domain AMD22_RS09710 PF13840 ACT domain AMD22_RS09715 PF00288 GHMP kinases N terminal domain AMD22_RS09715 PF08544 GHMP kinases C terminal AMD22_RS09725 PF00291 Pyridoxal-phosphate dependent enzyme AMD22_RS09725 PF14821 Threonine synthase N terminus AMD22_RS09735 PF13545 Crp-like helix-turn-helix domain AMD22_RS09735 PF00027 Cyclic nucleotide-binding domain AMD22_RS09740 PF13393 Histidyl-tRNA synthetase AMD22_RS09740 PF03129 Anticodon binding domain AMD22_RS09750 PF08029 HisG, C-terminal domain AMD22_RS09750 PF01634 ATP phosphoribosyltransferase AMD22_RS09755 PF00815 Histidinol dehydrogenase AMD22_RS09760 PF00155 Aminotransferase class I and II AMD22_RS09765 PF00475 Imidazoleglycerol-phosphate dehydratase AMD22_RS09770 PF00117 Glutamine amidotransferase class-I AMD22_RS09775 PF00977 Histidine biosynthesis protein AMD22_RS09780 PF00977 Histidine biosynthesis protein AMD22_RS09785 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMD22_RS09785 PF01502 Phosphoribosyl-AMP cyclohydrolase AMD22_RS09805 PF03079 ARD/ARD' family AMD22_RS09810 PF00596 Class II Aldolase and Adducin N-terminal domain AMD22_RS09815 PF13520 Amino acid permease AMD22_RS09820 PF13520 Amino acid permease AMD22_RS09830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD22_RS09830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD22_RS09830 PF01842 ACT domain AMD22_RS09835 PF01565 FAD binding domain AMD22_RS09835 PF02913 FAD linked oxidases, C-terminal domain AMD22_RS09855 PF09285 Elongation factor P, C-terminal AMD22_RS09855 PF08207 Elongation factor P (EF-P) KOW-like domain AMD22_RS09855 PF01132 Elongation factor P (EF-P) OB domain AMD22_RS09860 PF00106 short chain dehydrogenase AMD22_RS09865 PF00682 HMGL-like AMD22_RS09875 PF00378 Enoyl-CoA hydratase/isomerase AMD22_RS09885 PF07664 Ferrous iron transport protein B C terminus AMD22_RS09885 PF02421 Ferrous iron transport protein B AMD22_RS09885 PF07670 Nucleoside recognition AMD22_RS09900 PF00155 Aminotransferase class I and II AMD22_RS09905 PF03475 3-alpha domain AMD22_RS09905 PF03473 MOSC domain AMD22_RS09910 PF05173 Dihydrodipicolinate reductase, C-terminus AMD22_RS09910 PF01113 Dihydrodipicolinate reductase, N-terminus AMD22_RS09915 PF00117 Glutamine amidotransferase class-I AMD22_RS09915 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD22_RS09925 PF02142 MGS-like domain AMD22_RS09925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD22_RS09925 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD22_RS09930 PF03449 Transcription elongation factor, N-terminal AMD22_RS09930 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD22_RS09940 PF17768 RecJ OB domain AMD22_RS09940 PF02272 DHHA1 domain AMD22_RS09940 PF01368 DHH family AMD22_RS09985 PF04397 LytTr DNA-binding domain AMD22_RS09985 PF00072 Response regulator receiver domain AMD22_RS09990 PF00472 RF-1 domain AMD22_RS09990 PF03462 PCRF domain AMD22_RS09995 PF00152 tRNA synthetases class II (D, K and N) AMD22_RS09995 PF01336 OB-fold nucleic acid binding domain AMD22_RS10000 PF00072 Response regulator receiver domain AMD22_RS10005 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS10005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS10005 PF01627 Hpt domain AMD22_RS10005 PF00072 Response regulator receiver domain AMD22_RS10010 PF00378 Enoyl-CoA hydratase/isomerase AMD22_RS10015 PF13193 AMP-binding enzyme C-terminal domain AMD22_RS10015 PF00501 AMP-binding enzyme AMD22_RS10025 PF00694 Aconitase C-terminal domain AMD22_RS10025 PF00330 Aconitase family (aconitate hydratase) AMD22_RS10040 PF06434 Aconitate hydratase 2 N-terminus AMD22_RS10040 PF11791 Aconitate B N-terminal domain AMD22_RS10040 PF00330 Aconitase family (aconitate hydratase) AMD22_RS10045 PF00561 alpha/beta hydrolase fold AMD22_RS10050 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS10050 PF00563 EAL domain AMD22_RS10050 PF03707 Bacterial signalling protein N terminal repeat AMD22_RS10055 PF01339 CheB methylesterase AMD22_RS10055 PF00072 Response regulator receiver domain AMD22_RS10060 PF03975 CheD chemotactic sensory transduction AMD22_RS10065 PF03705 CheR methyltransferase, all-alpha domain AMD22_RS10065 PF01739 CheR methyltransferase, SAM binding domain AMD22_RS10070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10070 PF00672 HAMP domain AMD22_RS10070 PF02203 Tar ligand binding domain homologue AMD22_RS10075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10075 PF02203 Tar ligand binding domain homologue AMD22_RS10075 PF00672 HAMP domain AMD22_RS10080 PF02203 Tar ligand binding domain homologue AMD22_RS10080 PF00672 HAMP domain AMD22_RS10080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10090 PF02203 Tar ligand binding domain homologue AMD22_RS10090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10090 PF00672 HAMP domain AMD22_RS10095 PF00672 HAMP domain AMD22_RS10095 PF02203 Tar ligand binding domain homologue AMD22_RS10095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10100 PF00672 HAMP domain AMD22_RS10100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10105 PF00672 HAMP domain AMD22_RS10105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10105 PF02203 Tar ligand binding domain homologue AMD22_RS10120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10120 PF02203 Tar ligand binding domain homologue AMD22_RS10120 PF00672 HAMP domain AMD22_RS10125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10125 PF08269 Cache domain AMD22_RS10135 PF00672 HAMP domain AMD22_RS10135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10135 PF02203 Tar ligand binding domain homologue AMD22_RS10140 PF09078 CheY binding AMD22_RS10140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS10140 PF01584 CheW-like domain AMD22_RS10140 PF02895 Signal transducing histidine kinase, homodimeric domain AMD22_RS10140 PF01627 Hpt domain AMD22_RS10145 PF00072 Response regulator receiver domain AMD22_RS10155 PF01584 CheW-like domain AMD22_RS10160 PF13614 AAA domain AMD22_RS10165 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD22_RS10165 PF00691 OmpA family AMD22_RS10170 PF01618 MotA/TolQ/ExbB proton channel family AMD22_RS10185 PF03793 PASTA domain AMD22_RS10185 PF00069 Protein kinase domain AMD22_RS10255 PF13186 Iron-sulfur cluster-binding domain AMD22_RS10255 PF04055 Radical SAM superfamily AMD22_RS10270 PF01627 Hpt domain AMD22_RS10270 PF01584 CheW-like domain AMD22_RS10270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS10270 PF02895 Signal transducing histidine kinase, homodimeric domain AMD22_RS10270 PF00072 Response regulator receiver domain AMD22_RS10275 PF04344 Chemotaxis phosphatase, CheZ AMD22_RS10280 PF00072 Response regulator receiver domain AMD22_RS10285 PF04542 Sigma-70 region 2 AMD22_RS10285 PF04545 Sigma-70, region 4 AMD22_RS10285 PF04539 Sigma-70 region 3 AMD22_RS10290 PF10609 NUBPL iron-transfer P-loop NTPase AMD22_RS10295 PF00448 SRP54-type protein, GTPase domain AMD22_RS10300 PF00771 FHIPEP family AMD22_RS10305 PF01312 FlhB HrpN YscU SpaS Family AMD22_RS10310 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS10310 PF03707 Bacterial signalling protein N terminal repeat AMD22_RS10310 PF00563 EAL domain AMD22_RS10315 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS10325 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS10330 PF01311 Bacterial export proteins, family 1 AMD22_RS10335 PF01313 Bacterial export proteins, family 3 AMD22_RS10340 PF00813 FliP family AMD22_RS10345 PF04347 Flagellar biosynthesis protein, FliO AMD22_RS10350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD22_RS10355 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD22_RS10355 PF02154 Flagellar motor switch protein FliM AMD22_RS10375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD22_RS10375 PF18269 T3SS EscN ATPase C-terminal domain AMD22_RS10385 PF14841 FliG middle domain AMD22_RS10385 PF14842 FliG N-terminal domain AMD22_RS10385 PF01706 FliG C-terminal domain AMD22_RS10390 PF01514 Secretory protein of YscJ/FliF family AMD22_RS10390 PF08345 Flagellar M-ring protein C-terminal AMD22_RS10395 PF02049 Flagellar hook-basal body complex protein FliE AMD22_RS10400 PF00535 Glycosyl transferase family 2 AMD22_RS10400 PF00534 Glycosyl transferases group 1 AMD22_RS10435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD22_RS10435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD22_RS10445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD22_RS10450 PF00158 Sigma-54 interaction domain AMD22_RS10450 PF02954 Bacterial regulatory protein, Fis family AMD22_RS10450 PF06490 Flagellar regulatory protein FleQ AMD22_RS10455 PF01339 CheB methylesterase AMD22_RS10455 PF00072 Response regulator receiver domain AMD22_RS10460 PF04963 Sigma-54 factor, core binding domain AMD22_RS10460 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD22_RS10460 PF04552 Sigma-54, DNA binding domain AMD22_RS10465 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS10465 PF00072 Response regulator receiver domain AMD22_RS10480 PF02561 Flagellar protein FliS AMD22_RS10485 PF02465 Flagellar hook-associated protein 2 N-terminus AMD22_RS10485 PF07196 Flagellin hook IN motif AMD22_RS10485 PF07195 Flagellar hook-associated protein 2 C-terminus AMD22_RS10490 PF00669 Bacterial flagellin N-terminal helical region AMD22_RS10490 PF00700 Bacterial flagellin C-terminal helical region AMD22_RS10495 PF00669 Bacterial flagellin N-terminal helical region AMD22_RS10495 PF00700 Bacterial flagellin C-terminal helical region AMD22_RS10500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD22_RS10500 PF07196 Flagellin hook IN motif AMD22_RS10505 PF10135 Rod binding protein AMD22_RS10505 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD22_RS10510 PF02119 Flagellar P-ring protein AMD22_RS10515 PF02107 Flagellar L-ring protein AMD22_RS10520 PF00460 Flagella basal body rod protein AMD22_RS10520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD22_RS10525 PF00460 Flagella basal body rod protein AMD22_RS10525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD22_RS10530 PF07559 Flagellar basal body protein FlaE AMD22_RS10530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD22_RS10530 PF00460 Flagella basal body rod protein AMD22_RS10535 PF03963 Flagellar hook capping protein - N-terminal region AMD22_RS10540 PF00460 Flagella basal body rod protein AMD22_RS10540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD22_RS10550 PF01584 CheW-like domain AMD22_RS10550 PF00072 Response regulator receiver domain AMD22_RS10570 PF13188 PAS domain AMD22_RS10570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS10570 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS10570 PF13426 PAS domain AMD22_RS10570 PF00989 PAS fold AMD22_RS10575 PF03707 Bacterial signalling protein N terminal repeat AMD22_RS10575 PF00563 EAL domain AMD22_RS10575 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS10580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS10580 PF07730 Histidine kinase AMD22_RS10585 PF03707 Bacterial signalling protein N terminal repeat AMD22_RS10585 PF00563 EAL domain AMD22_RS10585 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS10595 PF12729 Four helix bundle sensory module for signal transduction AMD22_RS10595 PF00672 HAMP domain AMD22_RS10595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS10600 PF04356 Protein of unknown function (DUF489) AMD22_RS10610 PF00293 NUDIX domain AMD22_RS10615 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMD22_RS10620 PF07724 AAA domain (Cdc48 subfamily) AMD22_RS10620 PF17871 AAA lid domain AMD22_RS10620 PF02861 Clp amino terminal domain, pathogenicity island component AMD22_RS10620 PF00004 ATPase family associated with various cellular activities (AAA) AMD22_RS10620 PF10431 C-terminal, D2-small domain, of ClpB protein AMD22_RS10625 PF01176 Translation initiation factor 1A / IF-1 AMD22_RS10630 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMD22_RS10640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS10645 PF17854 FtsK alpha domain AMD22_RS10645 PF09397 Ftsk gamma domain AMD22_RS10645 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMD22_RS10645 PF01580 FtsK/SpoIIIE family AMD22_RS10655 PF03548 Outer membrane lipoprotein carrier protein LolA AMD22_RS10665 PF12002 MgsA AAA+ ATPase C terminal AMD22_RS10665 PF16193 AAA C-terminal domain AMD22_RS10665 PF00004 ATPase family associated with various cellular activities (AAA) AMD22_RS10670 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMD22_RS10680 PF00108 Thiolase, N-terminal domain AMD22_RS10680 PF02803 Thiolase, C-terminal domain AMD22_RS10685 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD22_RS10685 PF00378 Enoyl-CoA hydratase/isomerase AMD22_RS10685 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD22_RS10695 PF00334 Nucleoside diphosphate kinase AMD22_RS10700 PF04055 Radical SAM superfamily AMD22_RS10710 PF13464 Domain of unknown function (DUF4115) AMD22_RS10720 PF13360 PQQ-like domain AMD22_RS10720 PF01011 PQQ enzyme repeat AMD22_RS10725 PF01926 50S ribosome-binding GTPase AMD22_RS10725 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMD22_RS10730 PF03453 MoeA N-terminal region (domain I and II) AMD22_RS10730 PF03454 MoeA C-terminal region (domain IV) AMD22_RS10730 PF00994 Probable molybdopterin binding domain AMD22_RS10735 PF00899 ThiF family AMD22_RS10760 PF13823 Alcohol dehydrogenase GroES-associated AMD22_RS10760 PF00107 Zinc-binding dehydrogenase AMD22_RS10760 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS10770 PF03372 Endonuclease/Exonuclease/phosphatase family AMD22_RS10780 PF00994 Probable molybdopterin binding domain AMD22_RS10780 PF03454 MoeA C-terminal region (domain IV) AMD22_RS10780 PF03453 MoeA N-terminal region (domain I and II) AMD22_RS10785 PF12804 MobA-like NTP transferase domain AMD22_RS10795 PF00561 alpha/beta hydrolase fold AMD22_RS10800 PF01566 Natural resistance-associated macrophage protein AMD22_RS10805 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMD22_RS10805 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMD22_RS10810 PF14437 MafB19-like deaminase AMD22_RS10815 PF00929 Exonuclease AMD22_RS10820 PF05552 Conserved TM helix AMD22_RS10820 PF00924 Mechanosensitive ion channel AMD22_RS10825 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMD22_RS10825 PF02896 PEP-utilising enzyme, TIM barrel domain AMD22_RS10825 PF00391 PEP-utilising enzyme, mobile domain AMD22_RS10830 PF03618 Kinase/pyrophosphorylase AMD22_RS10850 PF01066 CDP-alcohol phosphatidyltransferase AMD22_RS10860 PF00561 alpha/beta hydrolase fold AMD22_RS10875 PF01266 FAD dependent oxidoreductase AMD22_RS10875 PF00355 Rieske [2Fe-2S] domain AMD22_RS10885 PF00575 S1 RNA binding domain AMD22_RS10885 PF09371 Tex-like protein N-terminal domain AMD22_RS10885 PF16921 Tex protein YqgF-like domain AMD22_RS10885 PF17674 HHH domain AMD22_RS10890 PF00072 Response regulator receiver domain AMD22_RS10890 PF09308 LuxQ, periplasmic AMD22_RS10890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS10890 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS10930 PF00034 Cytochrome c AMD22_RS10940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS10945 PF00873 AcrB/AcrD/AcrF family AMD22_RS10950 PF00873 AcrB/AcrD/AcrF family AMD22_RS10955 PF01081 KDPG and KHG aldolase AMD22_RS10960 PF00920 Dehydratase family AMD22_RS10965 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMD22_RS10970 PF02685 Glucokinase AMD22_RS10975 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD22_RS10975 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD22_RS10980 PF17912 MalK OB fold domain AMD22_RS10980 PF00005 ABC transporter AMD22_RS10990 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD22_RS10995 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD22_RS11000 PF00890 FAD binding domain AMD22_RS11000 PF02910 Fumarate reductase flavoprotein C-term AMD22_RS11010 PF13085 2Fe-2S iron-sulfur cluster binding domain AMD22_RS11015 PF03937 Flavinator of succinate dehydrogenase AMD22_RS11025 PF12704 MacB-like periplasmic core domain AMD22_RS11025 PF02687 FtsX-like permease family AMD22_RS11030 PF00005 ABC transporter AMD22_RS11040 PF00753 Metallo-beta-lactamase superfamily AMD22_RS11040 PF03772 Competence protein AMD22_RS11045 PF01618 MotA/TolQ/ExbB proton channel family AMD22_RS11050 PF02472 Biopolymer transport protein ExbD/TolR AMD22_RS11055 PF00664 ABC transporter transmembrane region AMD22_RS11055 PF00005 ABC transporter AMD22_RS11060 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMD22_RS11065 PF02348 Cytidylyltransferase AMD22_RS11070 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD22_RS11080 PF01541 GIY-YIG catalytic domain AMD22_RS11080 PF02151 UvrB/uvrC motif AMD22_RS11080 PF08459 UvrC Helix-hairpin-helix N-terminal AMD22_RS11085 PF01066 CDP-alcohol phosphatidyltransferase AMD22_RS11105 PF13193 AMP-binding enzyme C-terminal domain AMD22_RS11105 PF00501 AMP-binding enzyme AMD22_RS11105 PF00668 Condensation domain AMD22_RS11105 PF00550 Phosphopantetheine attachment site AMD22_RS11110 PF00501 AMP-binding enzyme AMD22_RS11110 PF13193 AMP-binding enzyme C-terminal domain AMD22_RS11110 PF00668 Condensation domain AMD22_RS11110 PF00550 Phosphopantetheine attachment site AMD22_RS11110 PF00975 Thioesterase domain AMD22_RS11120 PF01527 Transposase AMD22_RS11125 PF00665 Integrase core domain AMD22_RS11125 PF13333 Integrase core domain AMD22_RS11125 PF13276 HTH-like domain AMD22_RS11140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD22_RS11140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD22_RS11140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD22_RS11150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD22_RS11160 PF17773 UPF0176 acylphosphatase like domain AMD22_RS11160 PF00581 Rhodanese-like domain AMD22_RS11165 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS11165 PF00072 Response regulator receiver domain AMD22_RS11170 PF10150 Ribonuclease E/G family AMD22_RS11170 PF00575 S1 RNA binding domain AMD22_RS11170 PF12111 Polyribonucleotide phosphorylase C terminal AMD22_RS11175 PF00849 RNA pseudouridylate synthase AMD22_RS11175 PF01479 S4 domain AMD22_RS11180 PF11737 Protein of unknown function (DUF3300) AMD22_RS11185 PF02535 ZIP Zinc transporter AMD22_RS11195 PF01329 Pterin 4 alpha carbinolamine dehydratase AMD22_RS11200 PF01106 NifU-like domain AMD22_RS11245 PF08241 Methyltransferase domain AMD22_RS11245 PF12697 Alpha/beta hydrolase family AMD22_RS11255 PF00106 short chain dehydrogenase AMD22_RS11285 PF01494 FAD binding domain AMD22_RS11290 PF09335 SNARE associated Golgi protein AMD22_RS11300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD22_RS11310 PF07995 Glucose / Sorbosone dehydrogenase AMD22_RS11320 PF00144 Beta-lactamase AMD22_RS11325 PF04397 LytTr DNA-binding domain AMD22_RS11325 PF00072 Response regulator receiver domain AMD22_RS11330 PF07694 5TMR of 5TMR-LYT AMD22_RS11330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS11330 PF06580 Histidine kinase AMD22_RS11345 PF00082 Subtilase family AMD22_RS11345 PF03797 Autotransporter beta-domain AMD22_RS11350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS11355 PF00873 AcrB/AcrD/AcrF family AMD22_RS11365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS11365 PF00072 Response regulator receiver domain AMD22_RS11365 PF13426 PAS domain AMD22_RS11365 PF08448 PAS fold AMD22_RS11365 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS11370 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS11370 PF00072 Response regulator receiver domain AMD22_RS11375 PF12951 Passenger-associated-transport-repeat AMD22_RS11375 PF12951 Passenger-associated-transport-repeat AMD22_RS11380 PF08448 PAS fold AMD22_RS11380 PF08447 PAS fold AMD22_RS11380 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS11380 PF00563 EAL domain AMD22_RS11395 PF05974 Domain of unknown function (DUF892) AMD22_RS11410 PF10414 Sirohaem synthase dimerisation region AMD22_RS11410 PF14824 Sirohaem biosynthesis protein central AMD22_RS11410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD22_RS11425 PF05977 Transmembrane secretion effector AMD22_RS11435 PF07969 Amidohydrolase family AMD22_RS11445 PF00857 Isochorismatase family AMD22_RS11460 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS11460 PF00072 Response regulator receiver domain AMD22_RS11480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS11480 PF03466 LysR substrate binding domain AMD22_RS11485 PF00361 Proton-conducting membrane transporter AMD22_RS11485 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AMD22_RS11485 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD22_RS11490 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AMD22_RS11505 PF01381 Helix-turn-helix AMD22_RS11510 PF05284 Protein of unknown function (DUF736) AMD22_RS11515 PF04002 RadC-like JAB domain AMD22_RS11540 PF00589 Phage integrase family AMD22_RS11540 PF13356 Arm DNA-binding domain AMD22_RS11555 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS11555 PF00593 TonB dependent receptor AMD22_RS11570 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AMD22_RS11595 PF00593 TonB dependent receptor AMD22_RS11595 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS11605 PF10947 Protein of unknown function (DUF2628) AMD22_RS11620 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMD22_RS11620 PF00722 Glycosyl hydrolases family 16 AMD22_RS11640 PF00005 ABC transporter AMD22_RS11640 PF03412 Peptidase C39 family AMD22_RS11640 PF00664 ABC transporter transmembrane region AMD22_RS11650 PF13614 AAA domain AMD22_RS11695 PF00145 C-5 cytosine-specific DNA methylase AMD22_RS11745 PF06250 YhcG PDDEXK nuclease domain AMD22_RS11745 PF17761 DUF1016 N-terminal domain AMD22_RS11765 PF00892 EamA-like transporter family AMD22_RS11770 PF00892 EamA-like transporter family AMD22_RS11780 PF02525 Flavodoxin-like fold AMD22_RS11785 PF02798 Glutathione S-transferase, N-terminal domain AMD22_RS11785 PF00043 Glutathione S-transferase, C-terminal domain AMD22_RS11790 PF05544 Proline racemase AMD22_RS11795 PF03358 NADPH-dependent FMN reductase AMD22_RS11805 PF07690 Major Facilitator Superfamily AMD22_RS11810 PF02311 AraC-like ligand binding domain AMD22_RS11810 PF12833 Helix-turn-helix domain AMD22_RS11960 PF13361 UvrD-like helicase C-terminal domain AMD22_RS11960 PF00580 UvrD/REP helicase N-terminal domain AMD22_RS11960 PF12462 DNA helicase IV / RNA helicase N terminal AMD22_RS12035 PF03466 LysR substrate binding domain AMD22_RS12035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS12040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD22_RS12040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD22_RS12045 PF03401 Tripartite tricarboxylate transporter family receptor AMD22_RS12060 PF04002 RadC-like JAB domain AMD22_RS12095 PF13356 Arm DNA-binding domain AMD22_RS12095 PF00589 Phage integrase family AMD22_RS12100 PF02540 NAD synthase AMD22_RS12100 PF00958 GMP synthase C terminal domain AMD22_RS12100 PF00117 Glutamine amidotransferase class-I AMD22_RS12105 PF00478 IMP dehydrogenase / GMP reductase domain AMD22_RS12105 PF00571 CBS domain AMD22_RS12110 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMD22_RS12110 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMD22_RS12120 PF02254 TrkA-N domain AMD22_RS12120 PF00999 Sodium/hydrogen exchanger family AMD22_RS12125 PF00483 Nucleotidyl transferase AMD22_RS12130 PF02719 Polysaccharide biosynthesis protein AMD22_RS12135 PF00953 Glycosyl transferase family 4 AMD22_RS12140 PF18073 Rubredoxin metal binding domain AMD22_RS12150 PF00216 Bacterial DNA-binding protein AMD22_RS12155 PF00575 S1 RNA binding domain AMD22_RS12160 PF02224 Cytidylate kinase AMD22_RS12165 PF00444 Ribosomal protein L36 AMD22_RS12175 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMD22_RS12180 PF00795 Carbon-nitrogen hydrolase AMD22_RS12205 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS12210 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS12230 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS12240 PF03795 YCII-related domain AMD22_RS12245 PF02616 Segregation and condensation protein ScpA AMD22_RS12250 PF04079 Segregation and condensation complex subunit ScpB AMD22_RS12255 PF01479 S4 domain AMD22_RS12255 PF00849 RNA pseudouridylate synthase AMD22_RS12270 PF00795 Carbon-nitrogen hydrolase AMD22_RS12275 PF00155 Aminotransferase class I and II AMD22_RS12280 PF00005 ABC transporter AMD22_RS12285 PF03379 CcmB protein AMD22_RS12290 PF01578 Cytochrome C assembly protein AMD22_RS12300 PF03100 CcmE AMD22_RS12305 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD22_RS12305 PF01578 Cytochrome C assembly protein AMD22_RS12310 PF08534 Redoxin AMD22_RS12315 PF03918 Cytochrome C biogenesis protein AMD22_RS12325 PF00561 alpha/beta hydrolase fold AMD22_RS12330 PF00313 'Cold-shock' DNA-binding domain AMD22_RS12335 PF00005 ABC transporter AMD22_RS12335 PF00664 ABC transporter transmembrane region AMD22_RS12340 PF00664 ABC transporter transmembrane region AMD22_RS12340 PF00005 ABC transporter AMD22_RS12345 PF01654 Cytochrome bd terminal oxidase subunit I AMD22_RS12350 PF02322 Cytochrome bd terminal oxidase subunit II AMD22_RS12370 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD22_RS12370 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD22_RS12375 PF00171 Aldehyde dehydrogenase family AMD22_RS12380 PF00696 Amino acid kinase family AMD22_RS12380 PF01472 PUA domain AMD22_RS12390 PF00206 Lyase AMD22_RS12395 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD22_RS12405 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase AMD22_RS12405 PF00696 Amino acid kinase family AMD22_RS12410 PF01546 Peptidase family M20/M25/M40 AMD22_RS12410 PF07687 Peptidase dimerisation domain AMD22_RS12420 PF00764 Arginosuccinate synthase AMD22_RS12425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD22_RS12425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD22_RS12435 PF01406 tRNA synthetases class I (C) catalytic domain AMD22_RS12435 PF09190 DALR domain AMD22_RS12440 PF02657 Fe-S metabolism associated domain AMD22_RS12450 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD22_RS12460 PF01809 Putative membrane protein insertion efficiency factor AMD22_RS12465 PF01979 Amidohydrolase family AMD22_RS12470 PF08460 Bacterial SH3 domain AMD22_RS12470 PF01551 Peptidase family M23 AMD22_RS12485 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMD22_RS12490 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AMD22_RS12500 PF00753 Metallo-beta-lactamase superfamily AMD22_RS12520 PF01527 Transposase AMD22_RS12525 PF00295 Glycosyl hydrolases family 28 AMD22_RS12535 PF13419 Haloacid dehalogenase-like hydrolase AMD22_RS12545 PF01979 Amidohydrolase family AMD22_RS12555 PF09285 Elongation factor P, C-terminal AMD22_RS12555 PF08207 Elongation factor P (EF-P) KOW-like domain AMD22_RS12555 PF01132 Elongation factor P (EF-P) OB domain AMD22_RS12560 PF04055 Radical SAM superfamily AMD22_RS12565 PF13188 PAS domain AMD22_RS12565 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS12565 PF00563 EAL domain AMD22_RS12565 PF03707 Bacterial signalling protein N terminal repeat AMD22_RS12575 PF00588 SpoU rRNA Methylase family AMD22_RS12580 PF00459 Inositol monophosphatase family AMD22_RS12585 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD22_RS12585 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD22_RS12590 PF00545 ribonuclease AMD22_RS12600 PF12848 ABC transporter AMD22_RS12600 PF00005 ABC transporter AMD22_RS12600 PF16326 ABC transporter C-terminal domain AMD22_RS12605 PF03880 DbpA RNA binding domain AMD22_RS12605 PF00271 Helicase conserved C-terminal domain AMD22_RS12605 PF00270 DEAD/DEAH box helicase AMD22_RS12610 PF00156 Phosphoribosyl transferase domain AMD22_RS12615 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMD22_RS12620 PF00135 Carboxylesterase family AMD22_RS12625 PF02798 Glutathione S-transferase, N-terminal domain AMD22_RS12625 PF14497 Glutathione S-transferase, C-terminal domain AMD22_RS12630 PF00313 'Cold-shock' DNA-binding domain AMD22_RS12635 PF07152 YaeQ protein AMD22_RS12645 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS12645 PF00072 Response regulator receiver domain AMD22_RS12645 PF00563 EAL domain AMD22_RS12650 PF01435 Peptidase family M48 AMD22_RS12655 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD22_RS12660 PF00106 short chain dehydrogenase AMD22_RS12665 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMD22_RS12665 PF05233 PHB accumulation regulatory domain AMD22_RS12680 PF01119 DNA mismatch repair protein, C-terminal domain AMD22_RS12680 PF08676 MutL C terminal dimerisation domain AMD22_RS12685 PF11741 AMIN domain AMD22_RS12685 PF01520 N-acetylmuramoyl-L-alanine amidase AMD22_RS12690 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMD22_RS12695 PF03853 YjeF-related protein N-terminus AMD22_RS12695 PF01256 Carbohydrate kinase AMD22_RS12700 PF08331 Domain of unknown function (DUF1730) AMD22_RS12705 PF13742 OB-fold nucleic acid binding domain AMD22_RS12705 PF02601 Exonuclease VII, large subunit AMD22_RS12715 PF03781 Sulfatase-modifying factor enzyme 1 AMD22_RS12720 PF00570 HRDC domain AMD22_RS12720 PF01612 3'-5' exonuclease AMD22_RS12725 PF04679 ATP dependent DNA ligase C terminal region AMD22_RS12725 PF01068 ATP dependent DNA ligase domain AMD22_RS12725 PF13298 DNA polymerase Ligase (LigD) AMD22_RS12745 PF00589 Phage integrase family AMD22_RS12770 PF05598 Transposase domain (DUF772) AMD22_RS12780 PF01527 Transposase AMD22_RS12800 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD22_RS12800 PF01619 Proline dehydrogenase AMD22_RS12800 PF00171 Aldehyde dehydrogenase family AMD22_RS12800 PF14850 DNA-binding domain of Proline dehydrogenase AMD22_RS12810 PF01527 Transposase AMD22_RS12815 PF00665 Integrase core domain AMD22_RS12815 PF13333 Integrase core domain AMD22_RS12815 PF13276 HTH-like domain AMD22_RS12820 PF00239 Resolvase, N terminal domain AMD22_RS12820 PF02796 Helix-turn-helix domain of resolvase AMD22_RS12835 PF02384 N-6 DNA Methylase AMD22_RS12840 PF09572 XamI restriction endonuclease AMD22_RS12895 PF01584 CheW-like domain AMD22_RS12900 PF02743 Cache domain AMD22_RS12900 PF00672 HAMP domain AMD22_RS12900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS12905 PF02245 Methylpurine-DNA glycosylase (MPG) AMD22_RS12910 PF00270 DEAD/DEAH box helicase AMD22_RS12910 PF08494 DEAD/H associated AMD22_RS12910 PF00271 Helicase conserved C-terminal domain AMD22_RS12925 PF04386 Stringent starvation protein B AMD22_RS12930 PF00043 Glutathione S-transferase, C-terminal domain AMD22_RS12930 PF02798 Glutathione S-transferase, N-terminal domain AMD22_RS12935 PF02167 Cytochrome C1 family AMD22_RS12940 PF00033 Cytochrome b/b6/petB AMD22_RS12940 PF00032 Cytochrome b(C-terminal)/b6/petD AMD22_RS12945 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMD22_RS12945 PF00355 Rieske [2Fe-2S] domain AMD22_RS12950 PF01464 Transglycosylase SLT domain AMD22_RS12965 PF04055 Radical SAM superfamily AMD22_RS12965 PF01938 TRAM domain AMD22_RS12965 PF00919 Uncharacterized protein family UPF0004 AMD22_RS12970 PF02562 PhoH-like protein AMD22_RS12980 PF02130 Uncharacterized protein family UPF0054 AMD22_RS12990 PF03471 Transporter associated domain AMD22_RS12990 PF00571 CBS domain AMD22_RS13005 PF00171 Aldehyde dehydrogenase family AMD22_RS13015 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS13020 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS13025 PF00005 ABC transporter AMD22_RS13025 PF08402 TOBE domain AMD22_RS13030 PF02321 Outer membrane efflux protein AMD22_RS13035 PF07690 Major Facilitator Superfamily AMD22_RS13040 PF13533 Biotin-lipoyl like AMD22_RS13045 PF13416 Bacterial extracellular solute-binding protein AMD22_RS13050 PF00202 Aminotransferase class-III AMD22_RS13055 PF00120 Glutamine synthetase, catalytic domain AMD22_RS13060 PF07722 Peptidase C26 AMD22_RS13065 PF00120 Glutamine synthetase, catalytic domain AMD22_RS13070 PF01266 FAD dependent oxidoreductase AMD22_RS13075 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS13075 PF00072 Response regulator receiver domain AMD22_RS13080 PF01814 Hemerythrin HHE cation binding domain AMD22_RS13085 PF07690 Major Facilitator Superfamily AMD22_RS13085 PF00083 Sugar (and other) transporter AMD22_RS13095 PF00384 Molybdopterin oxidoreductase AMD22_RS13100 PF02634 FdhD/NarQ family AMD22_RS13105 PF07690 Major Facilitator Superfamily AMD22_RS13110 PF00202 Aminotransferase class-III AMD22_RS13120 PF04286 Protein of unknown function (DUF445) AMD22_RS13125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD22_RS13125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS13125 PF00072 Response regulator receiver domain AMD22_RS13125 PF01627 Hpt domain AMD22_RS13125 PF00672 HAMP domain AMD22_RS13125 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS13130 PF00072 Response regulator receiver domain AMD22_RS13135 PF07690 Major Facilitator Superfamily AMD22_RS13140 PF05088 Bacterial NAD-glutamate dehydrogenase AMD22_RS13150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS13150 PF00529 HlyD membrane-fusion protein of T1SS AMD22_RS13155 PF00873 AcrB/AcrD/AcrF family AMD22_RS13160 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS13165 PF05524 PEP-utilising enzyme, N-terminal AMD22_RS13165 PF00391 PEP-utilising enzyme, mobile domain AMD22_RS13165 PF02896 PEP-utilising enzyme, TIM barrel domain AMD22_RS13165 PF00381 PTS HPr component phosphorylation site AMD22_RS13165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD22_RS13170 PF00294 pfkB family carbohydrate kinase AMD22_RS13175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD22_RS13210 PF07549 SecD/SecF GG Motif AMD22_RS13210 PF02355 Protein export membrane protein AMD22_RS13215 PF02355 Protein export membrane protein AMD22_RS13215 PF13721 SecD export protein N-terminal TM region AMD22_RS13215 PF07549 SecD/SecF GG Motif AMD22_RS13220 PF02699 Preprotein translocase subunit AMD22_RS13225 PF01702 Queuine tRNA-ribosyltransferase AMD22_RS13230 PF02547 Queuosine biosynthesis protein AMD22_RS13275 PF02927 Cellulase N-terminal ig-like domain AMD22_RS13275 PF00759 Glycosyl hydrolase family 9 AMD22_RS13290 PF00037 4Fe-4S binding domain AMD22_RS13305 PF01467 Cytidylyltransferase-like AMD22_RS13315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS13315 PF00183 Hsp90 protein AMD22_RS13330 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS13330 PF00593 TonB dependent receptor AMD22_RS13340 PF04616 Glycosyl hydrolases family 43 AMD22_RS13345 PF07532 Bacterial Ig-like domain (group 4) AMD22_RS13350 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS13350 PF00593 TonB dependent receptor AMD22_RS13360 PF09286 Pro-kumamolisin, activation domain AMD22_RS13360 PF00082 Subtilase family AMD22_RS13385 PF13520 Amino acid permease AMD22_RS13400 PF01321 Creatinase/Prolidase N-terminal domain AMD22_RS13400 PF00557 Metallopeptidase family M24 AMD22_RS13405 PF00171 Aldehyde dehydrogenase family AMD22_RS13410 PF00701 Dihydrodipicolinate synthetase family AMD22_RS13415 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS13415 PF04324 BFD-like [2Fe-2S] binding domain AMD22_RS13425 PF01266 FAD dependent oxidoreductase AMD22_RS13430 PF05544 Proline racemase AMD22_RS13440 PF02881 SRP54-type protein, helical bundle domain AMD22_RS13440 PF00448 SRP54-type protein, GTPase domain AMD22_RS13445 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD22_RS13445 PF14815 NUDIX domain AMD22_RS13445 PF10576 Iron-sulfur binding domain of endonuclease III AMD22_RS13445 PF00633 Helix-hairpin-helix motif AMD22_RS13450 PF04362 Bacterial Fe(2+) trafficking AMD22_RS13455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS13455 PF13426 PAS domain AMD22_RS13455 PF00072 Response regulator receiver domain AMD22_RS13485 PF08212 Lipocalin-like domain AMD22_RS13495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD22_RS13495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD22_RS13495 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMD22_RS13495 PF02770 Acyl-CoA dehydrogenase, middle domain AMD22_RS13505 PF02780 Transketolase, C-terminal domain AMD22_RS13505 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMD22_RS13505 PF02779 Transketolase, pyrimidine binding domain AMD22_RS13525 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD22_RS13530 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD22_RS13530 PF00753 Metallo-beta-lactamase superfamily AMD22_RS13535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD22_RS13535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD22_RS13550 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD22_RS13565 PF14667 Polysaccharide biosynthesis C-terminal domain AMD22_RS13575 PF13439 Glycosyltransferase Family 4 AMD22_RS13575 PF00534 Glycosyl transferases group 1 AMD22_RS13595 PF02397 Bacterial sugar transferase AMD22_RS13615 PF13411 MerR HTH family regulatory protein AMD22_RS13620 PF00216 Bacterial DNA-binding protein AMD22_RS13625 PF01588 Putative tRNA binding domain AMD22_RS13625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMD22_RS13625 PF03484 tRNA synthetase B5 domain AMD22_RS13625 PF03147 Ferredoxin-fold anticodon binding domain AMD22_RS13625 PF03483 B3/4 domain AMD22_RS13630 PF01409 tRNA synthetases class II core domain (F) AMD22_RS13630 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMD22_RS13635 PF00453 Ribosomal protein L20 AMD22_RS13640 PF01632 Ribosomal protein L35 AMD22_RS13645 PF05198 Translation initiation factor IF-3, N-terminal domain AMD22_RS13645 PF00707 Translation initiation factor IF-3, C-terminal domain AMD22_RS13650 PF03129 Anticodon binding domain AMD22_RS13650 PF02824 TGS domain AMD22_RS13650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD22_RS13650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD22_RS13655 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS13660 PF00686 Starch binding domain AMD22_RS13660 PF00128 Alpha amylase, catalytic domain AMD22_RS13665 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMD22_RS13675 PF14508 Glycosyl-hydrolase 97 N-terminal AMD22_RS13675 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD22_RS13675 PF10566 Glycoside hydrolase 97 AMD22_RS13690 PF00128 Alpha amylase, catalytic domain AMD22_RS13695 PF01527 Transposase AMD22_RS13735 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AMD22_RS13750 PF01464 Transglycosylase SLT domain AMD22_RS13755 PF00437 Type II/IV secretion system protein AMD22_RS13760 PF03743 Bacterial conjugation TrbI-like protein AMD22_RS13780 PF02534 Type IV secretory system Conjugative DNA transfer AMD22_RS13795 PF00271 Helicase conserved C-terminal domain AMD22_RS13795 PF04851 Type III restriction enzyme, res subunit AMD22_RS13795 PF12344 Ultra-violet resistance protein B AMD22_RS13795 PF17757 UvrB interaction domain AMD22_RS13795 PF02151 UvrB/uvrC motif AMD22_RS13860 PF01555 DNA methylase AMD22_RS13910 PF00182 Chitinase class I AMD22_RS13975 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor AMD22_RS13975 PF07963 Prokaryotic N-terminal methylation motif AMD22_RS13980 PF05567 Neisseria PilC beta-propeller domain AMD22_RS14005 PF06580 Histidine kinase AMD22_RS14005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS14005 PF07694 5TMR of 5TMR-LYT AMD22_RS14010 PF03641 Possible lysine decarboxylase AMD22_RS14010 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AMD22_RS14010 PF11892 Domain of unknown function (DUF3412) AMD22_RS14015 PF00593 TonB dependent receptor AMD22_RS14020 PF01914 MarC family integral membrane protein AMD22_RS14030 PF00462 Glutaredoxin AMD22_RS14035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD22_RS14035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD22_RS14040 PF02222 ATP-grasp domain AMD22_RS14040 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMD22_RS14045 PF00731 AIR carboxylase AMD22_RS14055 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMD22_RS14055 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMD22_RS14065 PF00013 KH domain AMD22_RS14065 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMD22_RS14065 PF00575 S1 RNA binding domain AMD22_RS14065 PF03725 3' exoribonuclease family, domain 2 AMD22_RS14065 PF01138 3' exoribonuclease family, domain 1 AMD22_RS14070 PF00312 Ribosomal protein S15 AMD22_RS14075 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMD22_RS14075 PF09157 Pseudouridine synthase II TruB, C-terminal AMD22_RS14075 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMD22_RS14080 PF02033 Ribosome-binding factor A AMD22_RS14085 PF08364 Bacterial translation initiation factor IF-2 associated region AMD22_RS14085 PF00009 Elongation factor Tu GTP binding domain AMD22_RS14085 PF04760 Translation initiation factor IF-2, N-terminal region AMD22_RS14085 PF11987 Translation-initiation factor 2 AMD22_RS14090 PF13184 NusA-like KH domain AMD22_RS14090 PF00575 S1 RNA binding domain AMD22_RS14090 PF08529 NusA N-terminal domain AMD22_RS14095 PF17384 RimP C-terminal SH3 domain AMD22_RS14095 PF02576 RimP N-terminal domain AMD22_RS14105 PF00361 Proton-conducting membrane transporter AMD22_RS14110 PF00361 Proton-conducting membrane transporter AMD22_RS14110 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMD22_RS14115 PF00361 Proton-conducting membrane transporter AMD22_RS14115 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD22_RS14120 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD22_RS14125 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMD22_RS14130 PF12838 4Fe-4S dicluster domain AMD22_RS14135 PF00146 NADH dehydrogenase AMD22_RS14140 PF00384 Molybdopterin oxidoreductase AMD22_RS14140 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMD22_RS14140 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD22_RS14145 PF10531 SLBB domain AMD22_RS14145 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD22_RS14145 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMD22_RS14155 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMD22_RS14160 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMD22_RS14165 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMD22_RS14170 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMD22_RS14185 PF00121 Triosephosphate isomerase AMD22_RS14190 PF00106 short chain dehydrogenase AMD22_RS14205 PF03707 Bacterial signalling protein N terminal repeat AMD22_RS14205 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS14205 PF00563 EAL domain AMD22_RS14225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD22_RS14225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD22_RS14225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD22_RS14225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD22_RS14230 PF01039 Carboxyl transferase domain AMD22_RS14230 PF17848 Acetyl-coA carboxylase zinc finger domain AMD22_RS14235 PF00290 Tryptophan synthase alpha chain AMD22_RS14245 PF00291 Pyridoxal-phosphate dependent enzyme AMD22_RS14250 PF03466 LysR substrate binding domain AMD22_RS14250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS14255 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMD22_RS14260 PF01416 tRNA pseudouridine synthase AMD22_RS14280 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD22_RS14280 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMD22_RS14285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD22_RS14285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD22_RS14290 PF01264 Chorismate synthase AMD22_RS14295 PF05175 Methyltransferase small domain AMD22_RS14300 PF02630 SCO1/SenC AMD22_RS14305 PF02666 Phosphatidylserine decarboxylase AMD22_RS14315 PF05872 Bacterial protein of unknown function (DUF853) AMD22_RS14320 PF00293 NUDIX domain AMD22_RS14335 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD22_RS14335 PF03449 Transcription elongation factor, N-terminal AMD22_RS14340 PF18693 TRAM domain AMD22_RS14340 PF00919 Uncharacterized protein family UPF0004 AMD22_RS14340 PF04055 Radical SAM superfamily AMD22_RS14345 PF01738 Dienelactone hydrolase family AMD22_RS14365 PF00692 dUTPase AMD22_RS14370 PF10609 NUBPL iron-transfer P-loop NTPase AMD22_RS14375 PF00593 TonB dependent receptor AMD22_RS14375 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS14390 PF05649 Peptidase family M13 AMD22_RS14390 PF01431 Peptidase family M13 AMD22_RS14395 PF05649 Peptidase family M13 AMD22_RS14395 PF01431 Peptidase family M13 AMD22_RS14410 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD22_RS14415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD22_RS14415 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS14420 PF01266 FAD dependent oxidoreductase AMD22_RS14425 PF04235 Protein of unknown function (DUF418) AMD22_RS14430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD22_RS14435 PF00877 NlpC/P60 family AMD22_RS14440 PF00877 NlpC/P60 family AMD22_RS14455 PF00375 Sodium:dicarboxylate symporter family AMD22_RS14460 PF00245 Alkaline phosphatase AMD22_RS14465 PF09179 TilS substrate binding domain AMD22_RS14465 PF01171 PP-loop family AMD22_RS14465 PF11734 TilS substrate C-terminal domain AMD22_RS14470 PF02609 Exonuclease VII small subunit AMD22_RS14475 PF00348 Polyprenyl synthetase AMD22_RS14480 PF14521 Lysine-specific metallo-endopeptidase AMD22_RS14490 PF01523 Putative modulator of DNA gyrase AMD22_RS14495 PF04751 Protein of unknown function (DUF615) AMD22_RS14500 PF01523 Putative modulator of DNA gyrase AMD22_RS14510 PF13116 Protein of unknown function AMD22_RS14510 PF13502 AsmA-like C-terminal region AMD22_RS14515 PF00575 S1 RNA binding domain AMD22_RS14515 PF10150 Ribonuclease E/G family AMD22_RS14520 PF02545 Maf-like protein AMD22_RS14525 PF04402 Protein of unknown function (DUF541) AMD22_RS14540 PF02590 Predicted SPOUT methyltransferase AMD22_RS14555 PF01467 Cytidylyltransferase-like AMD22_RS14570 PF00133 tRNA synthetases class I (I, L, M and V) AMD22_RS14570 PF08264 Anticodon-binding domain of tRNA AMD22_RS14570 PF13603 Leucyl-tRNA synthetase, Domain 2 AMD22_RS14580 PF00085 Thioredoxin AMD22_RS14605 PF04070 Domain of unknown function (DUF378) AMD22_RS14610 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD22_RS14620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS14620 PF03466 LysR substrate binding domain AMD22_RS14650 PF00664 ABC transporter transmembrane region AMD22_RS14650 PF00005 ABC transporter AMD22_RS14660 PF00873 AcrB/AcrD/AcrF family AMD22_RS14675 PF02321 Outer membrane efflux protein AMD22_RS14680 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS14680 PF00072 Response regulator receiver domain AMD22_RS14685 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS14685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS14685 PF00672 HAMP domain AMD22_RS14690 PF00999 Sodium/hydrogen exchanger family AMD22_RS14695 PF00144 Beta-lactamase AMD22_RS14700 PF03737 Aldolase/RraA AMD22_RS14720 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS14725 PF00849 RNA pseudouridylate synthase AMD22_RS14725 PF01479 S4 domain AMD22_RS14730 PF00563 EAL domain AMD22_RS14730 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS14730 PF08448 PAS fold AMD22_RS14735 PF03880 DbpA RNA binding domain AMD22_RS14735 PF00270 DEAD/DEAH box helicase AMD22_RS14735 PF00271 Helicase conserved C-terminal domain AMD22_RS14785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD22_RS14785 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMD22_RS14795 PF00654 Voltage gated chloride channel AMD22_RS14800 PF00107 Zinc-binding dehydrogenase AMD22_RS14800 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS14815 PF00593 TonB dependent receptor AMD22_RS14815 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS14825 PF00082 Subtilase family AMD22_RS14825 PF01483 Proprotein convertase P-domain AMD22_RS14835 PF00082 Subtilase family AMD22_RS14835 PF01483 Proprotein convertase P-domain AMD22_RS14845 PF00248 Aldo/keto reductase family AMD22_RS14850 PF07690 Major Facilitator Superfamily AMD22_RS14855 PF03466 LysR substrate binding domain AMD22_RS14855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS14865 PF12833 Helix-turn-helix domain AMD22_RS14865 PF06719 AraC-type transcriptional regulator N-terminus AMD22_RS14875 PF00440 Bacterial regulatory proteins, tetR family AMD22_RS14875 PF16859 Tetracyclin repressor-like, C-terminal domain AMD22_RS14880 PF02321 Outer membrane efflux protein AMD22_RS14885 PF00873 AcrB/AcrD/AcrF family AMD22_RS14890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS14890 PF00529 HlyD membrane-fusion protein of T1SS AMD22_RS14900 PF01475 Ferric uptake regulator family AMD22_RS14905 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD22_RS14930 PF06123 Inner membrane protein CreD AMD22_RS14940 PF00672 HAMP domain AMD22_RS14940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS14940 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS14945 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS14945 PF00072 Response regulator receiver domain AMD22_RS14950 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMD22_RS14960 PF00270 DEAD/DEAH box helicase AMD22_RS14960 PF02559 CarD-like/TRCF domain AMD22_RS14960 PF03461 TRCF domain AMD22_RS14960 PF17757 UvrB interaction domain AMD22_RS14960 PF00271 Helicase conserved C-terminal domain AMD22_RS14995 PF01584 CheW-like domain AMD22_RS14995 PF02895 Signal transducing histidine kinase, homodimeric domain AMD22_RS14995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS14995 PF09078 CheY binding AMD22_RS14995 PF01627 Hpt domain AMD22_RS15000 PF00672 HAMP domain AMD22_RS15000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS15000 PF02203 Tar ligand binding domain homologue AMD22_RS15005 PF01584 CheW-like domain AMD22_RS15010 PF00563 EAL domain AMD22_RS15010 PF13426 PAS domain AMD22_RS15010 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS15015 PF03705 CheR methyltransferase, all-alpha domain AMD22_RS15015 PF01739 CheR methyltransferase, SAM binding domain AMD22_RS15020 PF00072 Response regulator receiver domain AMD22_RS15020 PF01339 CheB methylesterase AMD22_RS15025 PF13091 PLD-like domain AMD22_RS15030 PF01431 Peptidase family M13 AMD22_RS15030 PF05649 Peptidase family M13 AMD22_RS15040 PF00300 Histidine phosphatase superfamily (branch 1) AMD22_RS15045 PF04493 Endonuclease V AMD22_RS15055 PF02678 Pirin AMD22_RS15055 PF05726 Pirin C-terminal cupin domain AMD22_RS15070 PF02678 Pirin AMD22_RS15070 PF05726 Pirin C-terminal cupin domain AMD22_RS15075 PF02554 Carbon starvation protein CstA AMD22_RS15075 PF13722 5TM C-terminal transporter carbon starvation CstA AMD22_RS15080 PF04328 Selenoprotein, putative AMD22_RS15125 PF01527 Transposase AMD22_RS15135 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD22_RS15135 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD22_RS15140 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD22_RS15140 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD22_RS15145 PF01799 [2Fe-2S] binding domain AMD22_RS15145 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD22_RS15145 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMD22_RS15150 PF14765 Polyketide synthase dehydratase AMD22_RS15150 PF00550 Phosphopantetheine attachment site AMD22_RS15150 PF08659 KR domain AMD22_RS15150 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD22_RS15150 PF16197 Ketoacyl-synthetase C-terminal extension AMD22_RS15150 PF09277 Erythronolide synthase, docking AMD22_RS15150 PF08990 Erythronolide synthase docking AMD22_RS15150 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS15150 PF00698 Acyl transferase domain AMD22_RS15150 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD22_RS15155 PF01590 GAF domain AMD22_RS15155 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS15155 PF00360 Phytochrome region AMD22_RS15155 PF00563 EAL domain AMD22_RS15160 PF00436 Single-strand binding protein family AMD22_RS15165 PF00348 Polyprenyl synthetase AMD22_RS15175 PF02875 Mur ligase family, glutamate ligase domain AMD22_RS15175 PF08245 Mur ligase middle domain AMD22_RS15190 PF00696 Amino acid kinase family AMD22_RS15190 PF01842 ACT domain AMD22_RS15195 PF02567 Phenazine biosynthesis-like protein AMD22_RS15200 PF02567 Phenazine biosynthesis-like protein AMD22_RS15210 PF02566 OsmC-like protein AMD22_RS15215 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD22_RS15215 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD22_RS15220 PF03652 Holliday junction resolvase AMD22_RS15225 PF02622 Uncharacterized ACR, COG1678 AMD22_RS15235 PF13673 Acetyltransferase (GNAT) domain AMD22_RS15235 PF13302 Acetyltransferase (GNAT) domain AMD22_RS15235 PF00117 Glutamine amidotransferase class-I AMD22_RS15235 PF00958 GMP synthase C terminal domain AMD22_RS15235 PF03352 Methyladenine glycosylase AMD22_RS15245 PF03211 Pectate lyase AMD22_RS15250 PF00437 Type II/IV secretion system protein AMD22_RS15255 PF00437 Type II/IV secretion system protein AMD22_RS15260 PF01168 Alanine racemase, N-terminal domain AMD22_RS15265 PF03807 NADP oxidoreductase coenzyme F420-dependent AMD22_RS15265 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMD22_RS15275 PF01551 Peptidase family M23 AMD22_RS15295 PF01965 DJ-1/PfpI family AMD22_RS15305 PF02082 Transcriptional regulator AMD22_RS15310 PF01458 Uncharacterized protein family (UPF0051) AMD22_RS15315 PF00005 ABC transporter AMD22_RS15320 PF01458 Uncharacterized protein family (UPF0051) AMD22_RS15325 PF00266 Aminotransferase class-V AMD22_RS15335 PF00355 Rieske [2Fe-2S] domain AMD22_RS15340 PF00593 TonB dependent receptor AMD22_RS15340 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS15345 PF18331 PKHD-type hydroxylase C-terminal domain AMD22_RS15345 PF13640 2OG-Fe(II) oxygenase superfamily AMD22_RS15370 PF02424 ApbE family AMD22_RS15375 PF00258 Flavodoxin AMD22_RS15375 PF00667 FAD binding domain AMD22_RS15375 PF00175 Oxidoreductase NAD-binding domain AMD22_RS15395 PF07687 Peptidase dimerisation domain AMD22_RS15395 PF01546 Peptidase family M20/M25/M40 AMD22_RS15405 PF01636 Phosphotransferase enzyme family AMD22_RS15410 PF00483 Nucleotidyl transferase AMD22_RS15415 PF00308 Bacterial dnaA protein AMD22_RS15420 PF01594 AI-2E family transporter AMD22_RS15430 PF02769 AIR synthase related protein, C-terminal domain AMD22_RS15430 PF00586 AIR synthase related protein, N-terminal domain AMD22_RS15440 PF00551 Formyl transferase AMD22_RS15460 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD22_RS15465 PF01722 BolA-like protein AMD22_RS15470 PF01380 SIS domain AMD22_RS15470 PF00571 CBS domain AMD22_RS15485 PF03968 OstA-like protein AMD22_RS15490 PF00005 ABC transporter AMD22_RS15495 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD22_RS15495 PF04552 Sigma-54, DNA binding domain AMD22_RS15495 PF04963 Sigma-54 factor, core binding domain AMD22_RS15500 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD22_RS15505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD22_RS15510 PF02603 HPr Serine kinase N terminus AMD22_RS15510 PF07475 HPr Serine kinase C-terminal domain AMD22_RS15515 PF03668 P-loop ATPase protein family AMD22_RS15525 PF00381 PTS HPr component phosphorylation site AMD22_RS15530 PF02896 PEP-utilising enzyme, TIM barrel domain AMD22_RS15530 PF00391 PEP-utilising enzyme, mobile domain AMD22_RS15530 PF05524 PEP-utilising enzyme, N-terminal AMD22_RS15535 PF03448 MgtE intracellular N domain AMD22_RS15535 PF00571 CBS domain AMD22_RS15535 PF01769 Divalent cation transporter AMD22_RS15540 PF00756 Putative esterase AMD22_RS15545 PF02322 Cytochrome bd terminal oxidase subunit II AMD22_RS15550 PF01654 Cytochrome bd terminal oxidase subunit I AMD22_RS15560 PF00324 Amino acid permease AMD22_RS15565 PF00544 Pectate lyase AMD22_RS15570 PF00561 alpha/beta hydrolase fold AMD22_RS15580 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS15585 PF00324 Amino acid permease AMD22_RS15605 PF12706 Beta-lactamase superfamily domain AMD22_RS15610 PF04820 Tryptophan halogenase AMD22_RS15635 PF00376 MerR family regulatory protein AMD22_RS15635 PF09278 MerR, DNA binding AMD22_RS15640 PF07690 Major Facilitator Superfamily AMD22_RS15650 PF03738 Glutathionylspermidine synthase preATP-grasp AMD22_RS15675 PF04012 PspA/IM30 family AMD22_RS15685 PF01243 Pyridoxamine 5'-phosphate oxidase AMD22_RS15685 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMD22_RS15690 PF01202 Shikimate kinase AMD22_RS15695 PF01761 3-dehydroquinate synthase AMD22_RS15705 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMD22_RS15775 PF02954 Bacterial regulatory protein, Fis family AMD22_RS15775 PF01590 GAF domain AMD22_RS15775 PF00158 Sigma-54 interaction domain AMD22_RS15780 PF07690 Major Facilitator Superfamily AMD22_RS15785 PF01627 Hpt domain AMD22_RS15785 PF00672 HAMP domain AMD22_RS15785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS15785 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS15785 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD22_RS15785 PF00072 Response regulator receiver domain AMD22_RS15790 PF00072 Response regulator receiver domain AMD22_RS15790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS15790 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD22_RS15790 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS15790 PF01627 Hpt domain AMD22_RS15790 PF00672 HAMP domain AMD22_RS15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS15800 PF00072 Response regulator receiver domain AMD22_RS15800 PF01627 Hpt domain AMD22_RS15800 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS15805 PF04264 YceI-like domain AMD22_RS15825 PF03315 Serine dehydratase beta chain AMD22_RS15825 PF03313 Serine dehydratase alpha chain AMD22_RS15830 PF12697 Alpha/beta hydrolase family AMD22_RS15835 PF03447 Homoserine dehydrogenase, NAD binding domain AMD22_RS15835 PF00742 Homoserine dehydrogenase AMD22_RS15835 PF00696 Amino acid kinase family AMD22_RS15840 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD22_RS15845 PF00561 alpha/beta hydrolase fold AMD22_RS15850 PF08525 Opacity-associated protein A N-terminal motif AMD22_RS15850 PF01476 LysM domain AMD22_RS15850 PF01551 Peptidase family M23 AMD22_RS15855 PF00009 Elongation factor Tu GTP binding domain AMD22_RS15855 PF16658 Class II release factor RF3, C-terminal domain AMD22_RS15860 PF03006 Haemolysin-III related AMD22_RS15865 PF05170 AsmA family AMD22_RS15870 PF00571 CBS domain AMD22_RS15870 PF00478 IMP dehydrogenase / GMP reductase domain AMD22_RS15875 PF00535 Glycosyl transferase family 2 AMD22_RS15880 PF00912 Transglycosylase AMD22_RS15885 PF01430 Hsp33 protein AMD22_RS15895 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS15895 PF00593 TonB dependent receptor AMD22_RS15905 PF00440 Bacterial regulatory proteins, tetR family AMD22_RS15910 PF00561 alpha/beta hydrolase fold AMD22_RS15915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD22_RS15915 PF09317 Domain of unknown function (DUF1974) AMD22_RS15915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD22_RS15940 PF01597 Glycine cleavage H-protein AMD22_RS15945 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD22_RS15945 PF01571 Aminomethyltransferase folate-binding domain AMD22_RS15955 PF16200 C-terminal region of band_7 AMD22_RS15955 PF01145 SPFH domain / Band 7 family AMD22_RS15960 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMD22_RS15965 PF03819 MazG nucleotide pyrophosphohydrolase domain AMD22_RS15970 PF00459 Inositol monophosphatase family AMD22_RS15975 PF00293 NUDIX domain AMD22_RS15980 PF00202 Aminotransferase class-III AMD22_RS15985 PF04452 RNA methyltransferase AMD22_RS15990 PF02685 Glucokinase AMD22_RS16005 PF01476 LysM domain AMD22_RS16005 PF00704 Glycosyl hydrolases family 18 AMD22_RS16010 PF00728 Glycosyl hydrolase family 20, catalytic domain AMD22_RS16010 PF02838 Glycosyl hydrolase family 20, domain 2 AMD22_RS16010 PF07691 PA14 domain AMD22_RS16020 PF07691 PA14 domain AMD22_RS16020 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD22_RS16020 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD22_RS16020 PF14310 Fibronectin type III-like domain AMD22_RS16030 PF01301 Glycosyl hydrolases family 35 AMD22_RS16035 PF13520 Amino acid permease AMD22_RS16045 PF02056 Family 4 glycosyl hydrolase AMD22_RS16045 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMD22_RS16055 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD22_RS16055 PF07971 Glycosyl hydrolase family 92 AMD22_RS16060 PF01301 Glycosyl hydrolases family 35 AMD22_RS16090 PF03932 CutC family AMD22_RS16095 PF01112 Asparaginase AMD22_RS16105 PF13302 Acetyltransferase (GNAT) domain AMD22_RS16120 PF01584 CheW-like domain AMD22_RS16120 PF02895 Signal transducing histidine kinase, homodimeric domain AMD22_RS16120 PF01627 Hpt domain AMD22_RS16120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS16120 PF00072 Response regulator receiver domain AMD22_RS16125 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMD22_RS16125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS16130 PF01584 CheW-like domain AMD22_RS16135 PF00072 Response regulator receiver domain AMD22_RS16140 PF00072 Response regulator receiver domain AMD22_RS16145 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMD22_RS16145 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMD22_RS16155 PF03747 ADP-ribosylglycohydrolase AMD22_RS16160 PF00814 Glycoprotease family AMD22_RS16165 PF13307 Helicase C-terminal domain AMD22_RS16165 PF04851 Type III restriction enzyme, res subunit AMD22_RS16175 PF14814 Bifunctional transglycosylase second domain AMD22_RS16175 PF00905 Penicillin binding protein transpeptidase domain AMD22_RS16175 PF00912 Transglycosylase AMD22_RS16180 PF00535 Glycosyl transferase family 2 AMD22_RS16190 PF02824 TGS domain AMD22_RS16190 PF04607 Region found in RelA / SpoT proteins AMD22_RS16190 PF13291 ACT domain AMD22_RS16195 PF12706 Beta-lactamase superfamily domain AMD22_RS16200 PF03070 TENA/THI-4/PQQC family AMD22_RS16205 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMD22_RS16210 PF13186 Iron-sulfur cluster-binding domain AMD22_RS16210 PF04055 Radical SAM superfamily AMD22_RS16225 PF02685 Glucokinase AMD22_RS16235 PF00270 DEAD/DEAH box helicase AMD22_RS16235 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMD22_RS16235 PF00271 Helicase conserved C-terminal domain AMD22_RS16235 PF04408 Helicase associated domain (HA2) AMD22_RS16235 PF11898 Domain of unknown function (DUF3418) AMD22_RS16240 PF00210 Ferritin-like domain AMD22_RS16245 PF09382 RQC domain AMD22_RS16245 PF16124 RecQ zinc-binding AMD22_RS16245 PF00570 HRDC domain AMD22_RS16245 PF00271 Helicase conserved C-terminal domain AMD22_RS16245 PF00270 DEAD/DEAH box helicase AMD22_RS16280 PF00672 HAMP domain AMD22_RS16280 PF02203 Tar ligand binding domain homologue AMD22_RS16280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS16285 PF01810 LysE type translocator AMD22_RS16290 PF03466 LysR substrate binding domain AMD22_RS16290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS16300 PF13426 PAS domain AMD22_RS16300 PF07536 HWE histidine kinase AMD22_RS16300 PF13581 Histidine kinase-like ATPase domain AMD22_RS16305 PF06508 Queuosine biosynthesis protein QueC AMD22_RS16315 PF04055 Radical SAM superfamily AMD22_RS16325 PF00691 OmpA family AMD22_RS16330 PF07676 WD40-like Beta Propeller Repeat AMD22_RS16330 PF04052 TolB amino-terminal domain AMD22_RS16340 PF02472 Biopolymer transport protein ExbD/TolR AMD22_RS16345 PF01618 MotA/TolQ/ExbB proton channel family AMD22_RS16350 PF03061 Thioesterase superfamily AMD22_RS16355 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMD22_RS16355 PF05491 RuvB C-terminal winged helix domain AMD22_RS16355 PF17864 RuvB AAA lid domain AMD22_RS16365 PF02705 K+ potassium transporter AMD22_RS16370 PF07499 RuvA, C-terminal domain AMD22_RS16370 PF01330 RuvA N terminal domain AMD22_RS16375 PF02075 Crossover junction endodeoxyribonuclease RuvC AMD22_RS16380 PF01709 Transcriptional regulator AMD22_RS16395 PF02938 GAD domain AMD22_RS16395 PF00152 tRNA synthetases class II (D, K and N) AMD22_RS16395 PF01336 OB-fold nucleic acid binding domain AMD22_RS16410 PF07690 Major Facilitator Superfamily AMD22_RS16435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS16435 PF03466 LysR substrate binding domain AMD22_RS16445 PF00005 ABC transporter AMD22_RS16445 PF12848 ABC transporter AMD22_RS16450 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS16450 PF00593 TonB dependent receptor AMD22_RS16465 PF00593 TonB dependent receptor AMD22_RS16465 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS16470 PF00593 TonB dependent receptor AMD22_RS16470 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS16475 PF00067 Cytochrome P450 AMD22_RS16480 PF00999 Sodium/hydrogen exchanger family AMD22_RS16480 PF02254 TrkA-N domain AMD22_RS16505 PF00593 TonB dependent receptor AMD22_RS16505 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS16505 PF07660 Secretin and TonB N terminus short domain AMD22_RS16515 PF04183 IucA / IucC family AMD22_RS16515 PF06276 Ferric iron reductase FhuF-like transporter AMD22_RS16520 PF07690 Major Facilitator Superfamily AMD22_RS16525 PF06276 Ferric iron reductase FhuF-like transporter AMD22_RS16525 PF04183 IucA / IucC family AMD22_RS16530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD22_RS16530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD22_RS16545 PF02654 Cobalamin-5-phosphate synthase AMD22_RS16555 PF02277 Phosphoribosyltransferase AMD22_RS16560 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMD22_RS16565 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMD22_RS16565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD22_RS16570 PF00155 Aminotransferase class I and II AMD22_RS16575 PF03186 CobD/Cbib protein AMD22_RS16575 PF17113 Regulatory signalling modulator protein AmpE AMD22_RS16580 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMD22_RS16580 PF12557 Cob(I)alamin adenosyltransferase N terminal AMD22_RS16595 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS16595 PF00593 TonB dependent receptor AMD22_RS16600 PF00004 ATPase family associated with various cellular activities (AAA) AMD22_RS16600 PF07724 AAA domain (Cdc48 subfamily) AMD22_RS16600 PF02861 Clp amino terminal domain, pathogenicity island component AMD22_RS16600 PF10431 C-terminal, D2-small domain, of ClpB protein AMD22_RS16600 PF17871 AAA lid domain AMD22_RS16605 PF00005 ABC transporter AMD22_RS16610 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS16615 PF09084 NMT1/THI5 like AMD22_RS16620 PF00248 Aldo/keto reductase family AMD22_RS16625 PF00296 Luciferase-like monooxygenase AMD22_RS16630 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS16630 PF00593 TonB dependent receptor AMD22_RS16635 PF01541 GIY-YIG catalytic domain AMD22_RS16670 PF00593 TonB dependent receptor AMD22_RS16670 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS16675 PF02358 Trehalose-phosphatase AMD22_RS16680 PF00723 Glycosyl hydrolases family 15 AMD22_RS16685 PF00982 Glycosyltransferase family 20 AMD22_RS16690 PF01011 PQQ enzyme repeat AMD22_RS16695 PF02203 Tar ligand binding domain homologue AMD22_RS16695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS16695 PF00672 HAMP domain AMD22_RS16700 PF04134 Protein of unknown function, DUF393 AMD22_RS16710 PF02578 Multi-copper polyphenol oxidoreductase laccase AMD22_RS16715 PF00849 RNA pseudouridylate synthase AMD22_RS16720 PF13525 Outer membrane lipoprotein AMD22_RS16730 PF02540 NAD synthase AMD22_RS16730 PF00795 Carbon-nitrogen hydrolase AMD22_RS16760 PF13406 Transglycosylase SLT domain AMD22_RS16765 PF13700 Domain of unknown function (DUF4158) AMD22_RS16765 PF01526 Tn3 transposase DDE domain AMD22_RS16785 PF01129 NAD:arginine ADP-ribosyltransferase AMD22_RS16805 PF00549 CoA-ligase AMD22_RS16805 PF02629 CoA binding domain AMD22_RS16810 PF00549 CoA-ligase AMD22_RS16810 PF08442 ATP-grasp domain AMD22_RS16815 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS16815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS16820 PF00158 Sigma-54 interaction domain AMD22_RS16820 PF02954 Bacterial regulatory protein, Fis family AMD22_RS16820 PF00072 Response regulator receiver domain AMD22_RS16825 PF00437 Type II/IV secretion system protein AMD22_RS16825 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD22_RS16830 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD22_RS16830 PF00437 Type II/IV secretion system protein AMD22_RS16835 PF00437 Type II/IV secretion system protein AMD22_RS16835 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD22_RS16840 PF07963 Prokaryotic N-terminal methylation motif AMD22_RS16840 PF00114 Pilin (bacterial filament) AMD22_RS16845 PF00114 Pilin (bacterial filament) AMD22_RS16845 PF07963 Prokaryotic N-terminal methylation motif AMD22_RS16850 PF00482 Type II secretion system (T2SS), protein F AMD22_RS16855 PF06750 Bacterial Peptidase A24 N-terminal domain AMD22_RS16855 PF01478 Type IV leader peptidase family AMD22_RS16860 PF01121 Dephospho-CoA kinase AMD22_RS16880 PF00665 Integrase core domain AMD22_RS16880 PF13333 Integrase core domain AMD22_RS16880 PF13276 HTH-like domain AMD22_RS16885 PF00989 PAS fold AMD22_RS16885 PF16736 Single Cache-like AMD22_RS16885 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS16885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS16890 PF00072 Response regulator receiver domain AMD22_RS16890 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS16900 PF08443 RimK-like ATP-grasp domain AMD22_RS16900 PF18030 RimK PreATP-grasp domain AMD22_RS16905 PF00128 Alpha amylase, catalytic domain AMD22_RS16905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD22_RS16960 PF04002 RadC-like JAB domain AMD22_RS16985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS16985 PF00072 Response regulator receiver domain AMD22_RS16985 PF13426 PAS domain AMD22_RS16990 PF00072 Response regulator receiver domain AMD22_RS16990 PF13426 PAS domain AMD22_RS16990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS17030 PF01527 Transposase AMD22_RS17075 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS17075 PF08448 PAS fold AMD22_RS17075 PF13188 PAS domain AMD22_RS17075 PF00072 Response regulator receiver domain AMD22_RS17075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS17100 PF13676 TIR domain AMD22_RS17115 PF03797 Autotransporter beta-domain AMD22_RS17115 PF00657 GDSL-like Lipase/Acylhydrolase AMD22_RS17125 PF05690 Thiazole biosynthesis protein ThiG AMD22_RS17130 PF02390 Putative methyltransferase AMD22_RS17135 PF02080 TrkA-C domain AMD22_RS17135 PF03600 Citrate transporter AMD22_RS17150 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD22_RS17155 PF01741 Large-conductance mechanosensitive channel, MscL AMD22_RS17170 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS17180 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMD22_RS17180 PF00703 Glycosyl hydrolases family 2 AMD22_RS17180 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD22_RS17185 PF10566 Glycoside hydrolase 97 AMD22_RS17185 PF14508 Glycosyl-hydrolase 97 N-terminal AMD22_RS17185 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD22_RS17195 PF00135 Carboxylesterase family AMD22_RS17200 PF00588 SpoU rRNA Methylase family AMD22_RS17200 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD22_RS17210 PF01433 Peptidase family M1 domain AMD22_RS17210 PF11838 ERAP1-like C-terminal domain AMD22_RS17260 PF00873 AcrB/AcrD/AcrF family AMD22_RS17265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS17265 PF00529 HlyD membrane-fusion protein of T1SS AMD22_RS17270 PF00009 Elongation factor Tu GTP binding domain AMD22_RS17275 PF01507 Phosphoadenosine phosphosulfate reductase family AMD22_RS17280 PF00175 Oxidoreductase NAD-binding domain AMD22_RS17280 PF00667 FAD binding domain AMD22_RS17280 PF00258 Flavodoxin AMD22_RS17285 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD22_RS17285 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD22_RS17290 PF01507 Phosphoadenosine phosphosulfate reductase family AMD22_RS17310 PF01627 Hpt domain AMD22_RS17310 PF00072 Response regulator receiver domain AMD22_RS17310 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS17325 PF03466 LysR substrate binding domain AMD22_RS17325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS17330 PF14824 Sirohaem biosynthesis protein central AMD22_RS17330 PF10414 Sirohaem synthase dimerisation region AMD22_RS17330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD22_RS17335 PF00291 Pyridoxal-phosphate dependent enzyme AMD22_RS17345 PF01661 Macro domain AMD22_RS17350 PF00274 Fructose-bisphosphate aldolase class-I AMD22_RS17355 PF02887 Pyruvate kinase, alpha/beta domain AMD22_RS17355 PF00224 Pyruvate kinase, barrel domain AMD22_RS17360 PF13419 Haloacid dehalogenase-like hydrolase AMD22_RS17365 PF00162 Phosphoglycerate kinase AMD22_RS17385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD22_RS17385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD22_RS17395 PF03922 OmpW family AMD22_RS17400 PF03922 OmpW family AMD22_RS17410 PF04273 Putative phosphatase (DUF442) AMD22_RS17410 PF00753 Metallo-beta-lactamase superfamily AMD22_RS17420 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS17425 PF03459 TOBE domain AMD22_RS17425 PF00005 ABC transporter AMD22_RS17460 PF01476 LysM domain AMD22_RS17460 PF03734 L,D-transpeptidase catalytic domain AMD22_RS17465 PF04225 Opacity-associated protein A LysM-like domain AMD22_RS17465 PF01551 Peptidase family M23 AMD22_RS17475 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS17475 PF00593 TonB dependent receptor AMD22_RS17490 PF02779 Transketolase, pyrimidine binding domain AMD22_RS17490 PF02780 Transketolase, C-terminal domain AMD22_RS17490 PF00456 Transketolase, thiamine diphosphate binding domain AMD22_RS17495 PF00375 Sodium:dicarboxylate symporter family AMD22_RS17505 PF07584 Aerotolerance regulator N-terminal AMD22_RS17505 PF00092 von Willebrand factor type A domain AMD22_RS17525 PF07726 ATPase family associated with various cellular activities (AAA) AMD22_RS17525 PF17863 AAA lid domain AMD22_RS17530 PF11741 AMIN domain AMD22_RS17530 PF03958 Bacterial type II/III secretion system short domain AMD22_RS17530 PF07660 Secretin and TonB N terminus short domain AMD22_RS17530 PF00263 Bacterial type II and III secretion system protein AMD22_RS17535 PF04351 Pilus assembly protein, PilP AMD22_RS17540 PF04350 Pilus assembly protein, PilO AMD22_RS17545 PF05137 Fimbrial assembly protein (PilN) AMD22_RS17550 PF11104 Type IV pilus assembly protein PilM; AMD22_RS17555 PF17092 Penicillin-binding protein OB-like domain AMD22_RS17555 PF00912 Transglycosylase AMD22_RS17555 PF00905 Penicillin binding protein transpeptidase domain AMD22_RS17565 PF00285 Citrate synthase, C-terminal domain AMD22_RS17570 PF01197 Ribosomal protein L31 AMD22_RS17575 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD22_RS17580 PF00270 DEAD/DEAH box helicase AMD22_RS17580 PF17191 RecG wedge domain AMD22_RS17580 PF00271 Helicase conserved C-terminal domain AMD22_RS17585 PF01042 Endoribonuclease L-PSP AMD22_RS17590 PF02824 TGS domain AMD22_RS17590 PF04607 Region found in RelA / SpoT proteins AMD22_RS17590 PF13291 ACT domain AMD22_RS17595 PF01192 RNA polymerase Rpb6 AMD22_RS17600 PF00625 Guanylate kinase AMD22_RS17605 PF08340 Domain of unknown function (DUF1732) AMD22_RS17605 PF03755 YicC-like family, N-terminal region AMD22_RS17610 PF01138 3' exoribonuclease family, domain 1 AMD22_RS17610 PF03725 3' exoribonuclease family, domain 2 AMD22_RS17620 PF01725 Ham1 family AMD22_RS17625 PF06969 HemN C-terminal domain AMD22_RS17625 PF04055 Radical SAM superfamily AMD22_RS17640 PF00557 Metallopeptidase family M24 AMD22_RS17650 PF00557 Metallopeptidase family M24 AMD22_RS17650 PF05195 Aminopeptidase P, N-terminal domain AMD22_RS17655 PF03695 Uncharacterised protein family (UPF0149) AMD22_RS17665 PF05164 Cell division protein ZapA AMD22_RS17670 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMD22_RS17680 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMD22_RS17690 PF13369 Transglutaminase-like superfamily AMD22_RS17695 PF00301 Rubredoxin AMD22_RS17700 PF02581 Thiamine monophosphate synthase AMD22_RS17715 PF00202 Aminotransferase class-III AMD22_RS17720 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS17720 PF17874 MalT-like TPR region AMD22_RS17725 PF00127 Copper binding proteins, plastocyanin/azurin family AMD22_RS17730 PF00155 Aminotransferase class I and II AMD22_RS17740 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD22_RS17740 PF00034 Cytochrome c AMD22_RS17745 PF01593 Flavin containing amine oxidoreductase AMD22_RS17760 PF00202 Aminotransferase class-III AMD22_RS17765 PF00027 Cyclic nucleotide-binding domain AMD22_RS17765 PF00520 Ion transport protein AMD22_RS17780 PF01569 PAP2 superfamily AMD22_RS17785 PF01062 Bestrophin, RFP-TM, chloride channel AMD22_RS17795 PF01225 Mur ligase family, catalytic domain AMD22_RS17795 PF08245 Mur ligase middle domain AMD22_RS17795 PF02875 Mur ligase family, glutamate ligase domain AMD22_RS17805 PF00365 Phosphofructokinase AMD22_RS17815 PF03030 Inorganic H+ pyrophosphatase AMD22_RS17825 PF00719 Inorganic pyrophosphatase AMD22_RS17835 PF00593 TonB dependent receptor AMD22_RS17835 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS17840 PF12833 Helix-turn-helix domain AMD22_RS17845 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS17845 PF18500 CadC C-terminal domain 1 AMD22_RS17850 PF01964 Radical SAM ThiC family AMD22_RS17850 PF13667 ThiC-associated domain AMD22_RS17855 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS17855 PF00593 TonB dependent receptor AMD22_RS17860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS17860 PF00672 HAMP domain AMD22_RS17870 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMD22_RS17870 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMD22_RS17875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD22_RS17875 PF00205 Thiamine pyrophosphate enzyme, central domain AMD22_RS17875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD22_RS17885 PF00291 Pyridoxal-phosphate dependent enzyme AMD22_RS17890 PF00682 HMGL-like AMD22_RS17890 PF08502 LeuA allosteric (dimerisation) domain AMD22_RS17895 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD22_RS17900 PF00694 Aconitase C-terminal domain AMD22_RS17905 PF00330 Aconitase family (aconitate hydratase) AMD22_RS17910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS17915 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS17930 PF02321 Outer membrane efflux protein AMD22_RS17935 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMD22_RS17940 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD22_RS17965 PF03949 Malic enzyme, NAD binding domain AMD22_RS17965 PF01515 Phosphate acetyl/butaryl transferase AMD22_RS17965 PF00390 Malic enzyme, N-terminal domain AMD22_RS17970 PF00375 Sodium:dicarboxylate symporter family AMD22_RS17980 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS17980 PF02743 Cache domain AMD22_RS17980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS17985 PF07690 Major Facilitator Superfamily AMD22_RS17995 PF03466 LysR substrate binding domain AMD22_RS17995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS18000 PF00248 Aldo/keto reductase family AMD22_RS18015 PF00072 Response regulator receiver domain AMD22_RS18015 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS18025 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS18025 PF08521 Two-component sensor kinase N-terminal AMD22_RS18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS18030 PF00072 Response regulator receiver domain AMD22_RS18030 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS18040 PF03600 Citrate transporter AMD22_RS18045 PF00106 short chain dehydrogenase AMD22_RS18050 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS18065 PF00128 Alpha amylase, catalytic domain AMD22_RS18080 PF03193 RsgA GTPase AMD22_RS18085 PF00155 Aminotransferase class I and II AMD22_RS18100 PF00593 TonB dependent receptor AMD22_RS18100 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS18105 PF01522 Polysaccharide deacetylase AMD22_RS18110 PF00462 Glutaredoxin AMD22_RS18125 PF01527 Transposase AMD22_RS18145 PF02645 Uncharacterised protein, DegV family COG1307 AMD22_RS18150 PF01327 Polypeptide deformylase AMD22_RS18155 PF03960 ArsC family AMD22_RS18170 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AMD22_RS18175 PF01270 Glycosyl hydrolases family 8 AMD22_RS18180 PF03170 Bacterial cellulose synthase subunit AMD22_RS18185 PF00535 Glycosyl transferase family 2 AMD22_RS18185 PF07238 PilZ domain AMD22_RS18185 PF03552 Cellulose synthase AMD22_RS18200 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMD22_RS18200 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD22_RS18245 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS18245 PF00593 TonB dependent receptor AMD22_RS18255 PF07702 UTRA domain AMD22_RS18255 PF00392 Bacterial regulatory proteins, gntR family AMD22_RS18265 PF00263 Bacterial type II and III secretion system protein AMD22_RS18265 PF03958 Bacterial type II/III secretion system short domain AMD22_RS18275 PF10741 Type II secretion system (T2SS), protein M subtype b AMD22_RS18280 PF05137 Fimbrial assembly protein (PilN) AMD22_RS18285 PF03934 Type II secretion system (T2SS), protein K AMD22_RS18295 PF07963 Prokaryotic N-terminal methylation motif AMD22_RS18300 PF12019 Type II transport protein GspH AMD22_RS18305 PF08334 Type II secretion system (T2SS), protein G AMD22_RS18310 PF00482 Type II secretion system (T2SS), protein F AMD22_RS18315 PF00437 Type II/IV secretion system protein AMD22_RS18315 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD22_RS18320 PF04151 Bacterial pre-peptidase C-terminal domain AMD22_RS18320 PF00082 Subtilase family AMD22_RS18325 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD22_RS18325 PF05658 Head domain of trimeric autotransporter adhesin AMD22_RS18325 PF03895 YadA-like membrane anchor domain AMD22_RS18325 PF13018 Extended Signal Peptide of Type V secretion system AMD22_RS18330 PF04151 Bacterial pre-peptidase C-terminal domain AMD22_RS18330 PF00082 Subtilase family AMD22_RS18335 PF13018 Extended Signal Peptide of Type V secretion system AMD22_RS18335 PF05658 Head domain of trimeric autotransporter adhesin AMD22_RS18335 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD22_RS18335 PF03895 YadA-like membrane anchor domain AMD22_RS18345 PF02769 AIR synthase related protein, C-terminal domain AMD22_RS18345 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMD22_RS18345 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMD22_RS18350 PF13098 Thioredoxin-like domain AMD22_RS18350 PF10411 Disulfide bond isomerase protein N-terminus AMD22_RS18355 PF00589 Phage integrase family AMD22_RS18355 PF02899 Phage integrase, N-terminal SAM-like domain AMD22_RS18370 PF03739 Lipopolysaccharide export system permease LptF/LptG AMD22_RS18380 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD22_RS18380 PF00883 Cytosol aminopeptidase family, catalytic domain AMD22_RS18395 PF10458 Valyl tRNA synthetase tRNA binding arm AMD22_RS18395 PF00133 tRNA synthetases class I (I, L, M and V) AMD22_RS18395 PF08264 Anticodon-binding domain of tRNA AMD22_RS18400 PF00593 TonB dependent receptor AMD22_RS18400 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS18405 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AMD22_RS18405 PF01464 Transglycosylase SLT domain AMD22_RS18410 PF00544 Pectate lyase AMD22_RS18425 PF01066 CDP-alcohol phosphatidyltransferase AMD22_RS18435 PF04073 Aminoacyl-tRNA editing domain AMD22_RS18435 PF03129 Anticodon binding domain AMD22_RS18435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD22_RS18440 PF00816 H-NS histone family AMD22_RS18450 PF02405 Permease MlaE AMD22_RS18455 PF00005 ABC transporter AMD22_RS18460 PF02470 MlaD protein AMD22_RS18460 PF03886 ABC-type transport auxiliary lipoprotein component AMD22_RS18480 PF05045 Rhamnan synthesis protein F AMD22_RS18480 PF14307 Glycosyltransferase WbsX AMD22_RS18485 PF01144 Coenzyme A transferase AMD22_RS18490 PF01144 Coenzyme A transferase AMD22_RS18495 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD22_RS18495 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD22_RS18495 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD22_RS18495 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD22_RS18500 PF00483 Nucleotidyl transferase AMD22_RS18500 PF01050 Mannose-6-phosphate isomerase AMD22_RS18505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD22_RS18505 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD22_RS18505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD22_RS18510 PF04321 RmlD substrate binding domain AMD22_RS18515 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMD22_RS18520 PF00483 Nucleotidyl transferase AMD22_RS18525 PF16363 GDP-mannose 4,6 dehydratase AMD22_RS18530 PF01012 Electron transfer flavoprotein domain AMD22_RS18535 PF01012 Electron transfer flavoprotein domain AMD22_RS18535 PF00766 Electron transfer flavoprotein FAD-binding domain AMD22_RS18545 PF01040 UbiA prenyltransferase family AMD22_RS18550 PF04030 D-arabinono-1,4-lactone oxidase AMD22_RS18550 PF01565 FAD binding domain AMD22_RS18555 PF00106 short chain dehydrogenase AMD22_RS18565 PF01370 NAD dependent epimerase/dehydratase family AMD22_RS18570 PF01593 Flavin containing amine oxidoreductase AMD22_RS18595 PF00535 Glycosyl transferase family 2 AMD22_RS18605 PF14524 Wzt C-terminal domain AMD22_RS18605 PF00005 ABC transporter AMD22_RS18615 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD22_RS18620 PF00291 Pyridoxal-phosphate dependent enzyme AMD22_RS18620 PF00571 CBS domain AMD22_RS18640 PF00437 Type II/IV secretion system protein AMD22_RS18650 PF14497 Glutathione S-transferase, C-terminal domain AMD22_RS18650 PF02798 Glutathione S-transferase, N-terminal domain AMD22_RS18660 PF00270 DEAD/DEAH box helicase AMD22_RS18660 PF00271 Helicase conserved C-terminal domain AMD22_RS18670 PF00593 TonB dependent receptor AMD22_RS18670 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS18675 PF01242 6-pyruvoyl tetrahydropterin synthase AMD22_RS18695 PF13185 GAF domain AMD22_RS18705 PF00756 Putative esterase AMD22_RS18710 PF00593 TonB dependent receptor AMD22_RS18710 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS18715 PF13419 Haloacid dehalogenase-like hydrolase AMD22_RS18720 PF00817 impB/mucB/samB family AMD22_RS18720 PF11799 impB/mucB/samB family C-terminal domain AMD22_RS18725 PF07977 FabA-like domain AMD22_RS18730 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD22_RS18730 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD22_RS18740 PF01432 Peptidase family M3 AMD22_RS18755 PF00394 Multicopper oxidase AMD22_RS18755 PF07731 Multicopper oxidase AMD22_RS18755 PF07732 Multicopper oxidase AMD22_RS18760 PF05275 Copper resistance protein B precursor (CopB) AMD22_RS18765 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD22_RS18790 PF01380 SIS domain AMD22_RS18795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS18800 PF02687 FtsX-like permease family AMD22_RS18800 PF12704 MacB-like periplasmic core domain AMD22_RS18800 PF00005 ABC transporter AMD22_RS18805 PF00005 ABC transporter AMD22_RS18805 PF02687 FtsX-like permease family AMD22_RS18805 PF12704 MacB-like periplasmic core domain AMD22_RS18810 PF02687 FtsX-like permease family AMD22_RS18810 PF12704 MacB-like periplasmic core domain AMD22_RS18820 PF00158 Sigma-54 interaction domain AMD22_RS18820 PF00072 Response regulator receiver domain AMD22_RS18820 PF02954 Bacterial regulatory protein, Fis family AMD22_RS18825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS18825 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS18830 PF00132 Bacterial transferase hexapeptide (six repeats) AMD22_RS18830 PF12804 MobA-like NTP transferase domain AMD22_RS18830 PF14602 Hexapeptide repeat of succinyl-transferase AMD22_RS18845 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMD22_RS18845 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMD22_RS18850 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD22_RS18850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD22_RS18855 PF00231 ATP synthase AMD22_RS18860 PF00306 ATP synthase alpha/beta chain, C terminal domain AMD22_RS18860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD22_RS18860 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD22_RS18865 PF00213 ATP synthase delta (OSCP) subunit AMD22_RS18870 PF00430 ATP synthase B/B' CF(0) AMD22_RS18875 PF00137 ATP synthase subunit C AMD22_RS18880 PF00119 ATP synthase A chain AMD22_RS18900 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS18900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD22_RS18910 PF02817 e3 binding domain AMD22_RS18910 PF00364 Biotin-requiring enzyme AMD22_RS18910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD22_RS18950 PF03180 NLPA lipoprotein AMD22_RS18955 PF00528 Binding-protein-dependent transport system inner membrane component AMD22_RS18960 PF09383 NIL domain AMD22_RS18960 PF00005 ABC transporter AMD22_RS18965 PF00892 EamA-like transporter family AMD22_RS18970 PF04461 Protein of unknown function (DUF520) AMD22_RS18980 PF00072 Response regulator receiver domain AMD22_RS18980 PF00989 PAS fold AMD22_RS18980 PF01627 Hpt domain AMD22_RS18980 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMD22_RS18980 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS18980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS19005 PF13419 Haloacid dehalogenase-like hydrolase AMD22_RS19010 PF00849 RNA pseudouridylate synthase AMD22_RS19010 PF01479 S4 domain AMD22_RS19015 PF08468 Methyltransferase small domain N-terminal AMD22_RS19015 PF05175 Methyltransferase small domain AMD22_RS19025 PF07995 Glucose / Sorbosone dehydrogenase AMD22_RS19035 PF00989 PAS fold AMD22_RS19035 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS19035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS19055 PF01168 Alanine racemase, N-terminal domain AMD22_RS19055 PF00842 Alanine racemase, C-terminal domain AMD22_RS19060 PF01266 FAD dependent oxidoreductase AMD22_RS19065 PF01037 Lrp/AsnC ligand binding domain AMD22_RS19075 PF01641 SelR domain AMD22_RS19085 PF01618 MotA/TolQ/ExbB proton channel family AMD22_RS19090 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD22_RS19090 PF00691 OmpA family AMD22_RS19115 PF01061 ABC-2 type transporter AMD22_RS19120 PF00005 ABC transporter AMD22_RS19125 PF00999 Sodium/hydrogen exchanger family AMD22_RS19130 PF02469 Fasciclin domain AMD22_RS19135 PF03167 Uracil DNA glycosylase superfamily AMD22_RS19145 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD22_RS19155 PF03466 LysR substrate binding domain AMD22_RS19155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS19160 PF03358 NADPH-dependent FMN reductase AMD22_RS19165 PF00248 Aldo/keto reductase family AMD22_RS19175 PF05649 Peptidase family M13 AMD22_RS19175 PF01431 Peptidase family M13 AMD22_RS19195 PF13520 Amino acid permease AMD22_RS19205 PF00072 Response regulator receiver domain AMD22_RS19205 PF04397 LytTr DNA-binding domain AMD22_RS19210 PF02743 Cache domain AMD22_RS19210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS19210 PF06580 Histidine kinase AMD22_RS19210 PF00672 HAMP domain AMD22_RS19225 PF05974 Domain of unknown function (DUF892) AMD22_RS19230 PF05067 Manganese containing catalase AMD22_RS19250 PF08448 PAS fold AMD22_RS19250 PF03705 CheR methyltransferase, all-alpha domain AMD22_RS19250 PF01739 CheR methyltransferase, SAM binding domain AMD22_RS19250 PF01339 CheB methylesterase AMD22_RS19265 PF00158 Sigma-54 interaction domain AMD22_RS19265 PF00072 Response regulator receiver domain AMD22_RS19265 PF02954 Bacterial regulatory protein, Fis family AMD22_RS19275 PF01654 Cytochrome bd terminal oxidase subunit I AMD22_RS19280 PF02322 Cytochrome bd terminal oxidase subunit II AMD22_RS19300 PF16363 GDP-mannose 4,6 dehydratase AMD22_RS19310 PF03275 UDP-galactopyranose mutase AMD22_RS19320 PF00664 ABC transporter transmembrane region AMD22_RS19320 PF00005 ABC transporter AMD22_RS19335 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS19335 PF13823 Alcohol dehydrogenase GroES-associated AMD22_RS19335 PF00107 Zinc-binding dehydrogenase AMD22_RS19380 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS19380 PF00593 TonB dependent receptor AMD22_RS19395 PF00005 ABC transporter AMD22_RS19405 PF03466 LysR substrate binding domain AMD22_RS19405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS19410 PF01042 Endoribonuclease L-PSP AMD22_RS19420 PF01527 Transposase AMD22_RS19440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD22_RS19440 PF00672 HAMP domain AMD22_RS19440 PF02203 Tar ligand binding domain homologue AMD22_RS19455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS19455 PF03466 LysR substrate binding domain AMD22_RS19460 PF02525 Flavodoxin-like fold AMD22_RS19500 PF00557 Metallopeptidase family M24 AMD22_RS19520 PF04539 Sigma-70 region 3 AMD22_RS19520 PF03979 Sigma-70 factor, region 1.1 AMD22_RS19520 PF04546 Sigma-70, non-essential region AMD22_RS19520 PF00140 Sigma-70 factor, region 1.2 AMD22_RS19520 PF04542 Sigma-70 region 2 AMD22_RS19520 PF04545 Sigma-70, region 4 AMD22_RS19525 PF02580 D-Tyr-tRNA(Tyr) deacylase AMD22_RS19530 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD22_RS19545 PF00925 GTP cyclohydrolase II AMD22_RS19565 PF00535 Glycosyl transferase family 2 AMD22_RS19580 PF01189 16S rRNA methyltransferase RsmB/F AMD22_RS19580 PF01029 NusB family AMD22_RS19585 PF02911 Formyl transferase, C-terminal domain AMD22_RS19585 PF00551 Formyl transferase AMD22_RS19590 PF01327 Polypeptide deformylase AMD22_RS19595 PF01476 LysM domain AMD22_RS19600 PF02481 DNA recombination-mediator protein A AMD22_RS19600 PF17782 DprA winged helix domain AMD22_RS19605 PF04361 Protein of unknown function (DUF494) AMD22_RS19610 PF00114 Pilin (bacterial filament) AMD22_RS19610 PF07963 Prokaryotic N-terminal methylation motif AMD22_RS19620 PF13368 Topoisomerase C-terminal repeat AMD22_RS19620 PF01751 Toprim domain AMD22_RS19620 PF01131 DNA topoisomerase AMD22_RS19625 PF01300 Telomere recombination AMD22_RS19650 PF01343 Peptidase family S49 AMD22_RS19655 PF01554 MatE AMD22_RS19675 PF00270 DEAD/DEAH box helicase AMD22_RS19675 PF00271 Helicase conserved C-terminal domain AMD22_RS19675 PF17764 3′ DNA-binding domain (3′BD) AMD22_RS19675 PF18074 Primosomal protein N C-terminal domain AMD22_RS19675 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMD22_RS19680 PF00043 Glutathione S-transferase, C-terminal domain AMD22_RS19680 PF13417 Glutathione S-transferase, N-terminal domain AMD22_RS19695 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD22_RS19700 PF03458 UPF0126 domain AMD22_RS19705 PF04545 Sigma-70, region 4 AMD22_RS19705 PF04542 Sigma-70 region 2 AMD22_RS19710 PF03167 Uracil DNA glycosylase superfamily AMD22_RS19715 PF00072 Response regulator receiver domain AMD22_RS19715 PF01339 CheB methylesterase AMD22_RS19720 PF18075 FtsX extracellular domain AMD22_RS19725 PF00005 ABC transporter AMD22_RS19730 PF00271 Helicase conserved C-terminal domain AMD22_RS19730 PF00270 DEAD/DEAH box helicase AMD22_RS19730 PF12300 ATP-dependent RNA helicase RhlB AMD22_RS19735 PF00085 Thioredoxin AMD22_RS19740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD22_RS19740 PF07498 Rho termination factor, N-terminal domain AMD22_RS19740 PF07497 Rho termination factor, RNA-binding domain AMD22_RS19745 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMD22_RS19750 PF03466 LysR substrate binding domain AMD22_RS19750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS19760 PF03971 Monomeric isocitrate dehydrogenase AMD22_RS19775 PF09704 CRISPR-associated protein (Cas_Cas5) AMD22_RS19795 PF01867 CRISPR associated protein Cas1 AMD22_RS19800 PF09827 CRISPR associated protein Cas2 AMD22_RS19810 PF04972 BON domain AMD22_RS19810 PF01476 LysM domain AMD22_RS19815 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMD22_RS19815 PF14489 QueF-like protein AMD22_RS19820 PF07687 Peptidase dimerisation domain AMD22_RS19820 PF01546 Peptidase family M20/M25/M40 AMD22_RS19825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS19830 PF00873 AcrB/AcrD/AcrF family AMD22_RS19835 PF00873 AcrB/AcrD/AcrF family AMD22_RS19840 PF07063 Domain of unknown function (DUF1338) AMD22_RS19880 PF01427 D-ala-D-ala dipeptidase AMD22_RS19885 PF01510 N-acetylmuramoyl-L-alanine amidase AMD22_RS19895 PF13378 Enolase C-terminal domain-like AMD22_RS19895 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD22_RS19905 PF13520 Amino acid permease AMD22_RS19920 PF05360 yiaA/B two helix domain AMD22_RS19925 PF07995 Glucose / Sorbosone dehydrogenase AMD22_RS19930 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD22_RS19930 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD22_RS19930 PF14310 Fibronectin type III-like domain AMD22_RS19935 PF02152 Dihydroneopterin aldolase AMD22_RS19940 PF00814 Glycoprotease family AMD22_RS19945 PF01165 Ribosomal protein S21 AMD22_RS19950 PF09424 Yqey-like protein AMD22_RS19955 PF03631 Virulence factor BrkB AMD22_RS19960 PF10410 DnaB-helicase binding domain of primase AMD22_RS19960 PF08278 DNA primase DnaG DnaB-binding AMD22_RS19960 PF01807 CHC2 zinc finger AMD22_RS19960 PF08275 DNA primase catalytic core, N-terminal domain AMD22_RS19965 PF13593 SBF-like CPA transporter family (DUF4137) AMD22_RS19975 PF01040 UbiA prenyltransferase family AMD22_RS20000 PF00510 Cytochrome c oxidase subunit III AMD22_RS20005 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMD22_RS20010 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD22_RS20015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD22_RS20015 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMD22_RS20025 PF00171 Aldehyde dehydrogenase family AMD22_RS20025 PF14850 DNA-binding domain of Proline dehydrogenase AMD22_RS20025 PF01619 Proline dehydrogenase AMD22_RS20025 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD22_RS20060 PF00579 tRNA synthetases class I (W and Y) AMD22_RS20065 PF04225 Opacity-associated protein A LysM-like domain AMD22_RS20065 PF01551 Peptidase family M23 AMD22_RS20070 PF03702 Anhydro-N-acetylmuramic acid kinase AMD22_RS20080 PF07690 Major Facilitator Superfamily AMD22_RS20085 PF03372 Endonuclease/Exonuclease/phosphatase family AMD22_RS20090 PF00156 Phosphoribosyl transferase domain AMD22_RS20100 PF13614 AAA domain AMD22_RS20105 PF02195 ParB-like nuclease domain AMD22_RS20105 PF17762 HTH domain found in ParB protein AMD22_RS20115 PF01370 NAD dependent epimerase/dehydratase family AMD22_RS20120 PF00535 Glycosyl transferase family 2 AMD22_RS20135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD22_RS20135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD22_RS20135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD22_RS20135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD22_RS20140 PF00692 dUTPase AMD22_RS20145 PF02441 Flavoprotein AMD22_RS20145 PF04127 DNA / pantothenate metabolism flavoprotein AMD22_RS20150 PF04002 RadC-like JAB domain AMD22_RS20155 PF00750 tRNA synthetases class I (R) AMD22_RS20155 PF05746 DALR anticodon binding domain AMD22_RS20155 PF03485 Arginyl tRNA synthetase N terminal domain AMD22_RS20170 PF00106 short chain dehydrogenase AMD22_RS20175 PF01757 Acyltransferase family AMD22_RS20180 PF03033 Glycosyltransferase family 28 N-terminal domain AMD22_RS20185 PF00501 AMP-binding enzyme AMD22_RS20185 PF00550 Phosphopantetheine attachment site AMD22_RS20185 PF00975 Thioesterase domain AMD22_RS20185 PF00668 Condensation domain AMD22_RS20185 PF13193 AMP-binding enzyme C-terminal domain AMD22_RS20195 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD22_RS20195 PF17944 Arginine decarboxylase C-terminal helical extension AMD22_RS20195 PF17810 Arginine decarboxylase helical bundle domain AMD22_RS20200 PF17284 Spermidine synthase tetramerisation domain AMD22_RS20230 PF00543 Nitrogen regulatory protein P-II AMD22_RS20235 PF04380 Membrane fusogenic activity AMD22_RS20240 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMD22_RS20240 PF01078 Magnesium chelatase, subunit ChlI AMD22_RS20255 PF00563 EAL domain AMD22_RS20255 PF12792 CSS motif domain associated with EAL AMD22_RS20260 PF00487 Fatty acid desaturase AMD22_RS20265 PF00970 Oxidoreductase FAD-binding domain AMD22_RS20265 PF00175 Oxidoreductase NAD-binding domain AMD22_RS20265 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD22_RS20270 PF00440 Bacterial regulatory proteins, tetR family AMD22_RS20290 PF01139 tRNA-splicing ligase RtcB AMD22_RS20330 PF01370 NAD dependent epimerase/dehydratase family AMD22_RS20330 PF08338 Domain of unknown function (DUF1731) AMD22_RS20335 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS20335 PF00072 Response regulator receiver domain AMD22_RS20340 PF08521 Two-component sensor kinase N-terminal AMD22_RS20340 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS20340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS20360 PF00595 PDZ domain AMD22_RS20380 PF01594 AI-2E family transporter AMD22_RS20385 PF13419 Haloacid dehalogenase-like hydrolase AMD22_RS20390 PF00883 Cytosol aminopeptidase family, catalytic domain AMD22_RS20390 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD22_RS20400 PF08281 Sigma-70, region 4 AMD22_RS20400 PF04542 Sigma-70 region 2 AMD22_RS20405 PF00199 Catalase AMD22_RS20420 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS20420 PF00072 Response regulator receiver domain AMD22_RS20425 PF07730 Histidine kinase AMD22_RS20430 PF13533 Biotin-lipoyl like AMD22_RS20435 PF00005 ABC transporter AMD22_RS20460 PF00892 EamA-like transporter family AMD22_RS20475 PF00753 Metallo-beta-lactamase superfamily AMD22_RS20480 PF00579 tRNA synthetases class I (W and Y) AMD22_RS20485 PF05532 CsbD-like AMD22_RS20500 PF00491 Arginase family AMD22_RS20525 PF02223 Thymidylate kinase AMD22_RS20540 PF03309 Type III pantothenate kinase AMD22_RS20545 PF03099 Biotin/lipoate A/B protein ligase family AMD22_RS20545 PF02237 Biotin protein ligase C terminal domain AMD22_RS20545 PF08279 HTH domain AMD22_RS20555 PF06167 Glucose-regulated metallo-peptidase M90 AMD22_RS20570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS20575 PF00486 Transcriptional regulatory protein, C terminal AMD22_RS20575 PF00072 Response regulator receiver domain AMD22_RS20585 PF01207 Dihydrouridine synthase (Dus) AMD22_RS20605 PF06733 DEAD_2 AMD22_RS20605 PF13307 Helicase C-terminal domain AMD22_RS20620 PF01488 Shikimate / quinate 5-dehydrogenase AMD22_RS20620 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMD22_RS20620 PF08501 Shikimate dehydrogenase substrate binding domain AMD22_RS20630 PF00667 FAD binding domain AMD22_RS20630 PF00258 Flavodoxin AMD22_RS20630 PF00175 Oxidoreductase NAD-binding domain AMD22_RS20640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS20640 PF03466 LysR substrate binding domain AMD22_RS20650 PF00490 Delta-aminolevulinic acid dehydratase AMD22_RS20675 PF00326 Prolyl oligopeptidase family AMD22_RS20675 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD22_RS20680 PF00043 Glutathione S-transferase, C-terminal domain AMD22_RS20680 PF02798 Glutathione S-transferase, N-terminal domain AMD22_RS20705 PF04820 Tryptophan halogenase AMD22_RS20720 PF00005 ABC transporter AMD22_RS20730 PF01381 Helix-turn-helix AMD22_RS20740 PF01229 Glycosyl hydrolases family 39 AMD22_RS20745 PF02583 Metal-sensitive transcriptional repressor AMD22_RS20750 PF16916 Dimerisation domain of Zinc Transporter AMD22_RS20750 PF01545 Cation efflux family AMD22_RS20760 PF07715 TonB-dependent Receptor Plug Domain AMD22_RS20760 PF00593 TonB dependent receptor AMD22_RS20770 PF01965 DJ-1/PfpI family AMD22_RS20770 PF12833 Helix-turn-helix domain AMD22_RS20775 PF00175 Oxidoreductase NAD-binding domain AMD22_RS20775 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD22_RS20775 PF00970 Oxidoreductase FAD-binding domain AMD22_RS20780 PF00005 ABC transporter AMD22_RS20785 PF01061 ABC-2 type transporter AMD22_RS20795 PF02558 Ketopantoate reductase PanE/ApbA AMD22_RS20795 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMD22_RS20825 PF00268 Ribonucleotide reductase, small chain AMD22_RS20830 PF03477 ATP cone domain AMD22_RS20830 PF02867 Ribonucleotide reductase, barrel domain AMD22_RS20830 PF00317 Ribonucleotide reductase, all-alpha domain AMD22_RS20840 PF13380 CoA binding domain AMD22_RS20840 PF00583 Acetyltransferase (GNAT) family AMD22_RS20840 PF13607 Succinyl-CoA ligase like flavodoxin domain AMD22_RS20845 PF00571 CBS domain AMD22_RS20845 PF03448 MgtE intracellular N domain AMD22_RS20845 PF01769 Divalent cation transporter AMD22_RS20850 PF00194 Eukaryotic-type carbonic anhydrase AMD22_RS20855 PF02254 TrkA-N domain AMD22_RS20855 PF00999 Sodium/hydrogen exchanger family AMD22_RS20860 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD22_RS20860 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD22_RS20865 PF00723 Glycosyl hydrolases family 15 AMD22_RS20880 PF05166 YcgL domain AMD22_RS20885 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD22_RS20885 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD22_RS20895 PF00535 Glycosyl transferase family 2 AMD22_RS20950 PF07977 FabA-like domain AMD22_RS20955 PF01553 Acyltransferase AMD22_RS20965 PF00550 Phosphopantetheine attachment site AMD22_RS20970 PF04820 Tryptophan halogenase AMD22_RS20990 PF00326 Prolyl oligopeptidase family AMD22_RS20990 PF07676 WD40-like Beta Propeller Repeat AMD22_RS21005 PF01218 Coproporphyrinogen III oxidase AMD22_RS21010 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD22_RS21010 PF01612 3'-5' exonuclease AMD22_RS21010 PF00476 DNA polymerase family A AMD22_RS21010 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD22_RS21020 PF06812 ImpA, N-terminal, type VI secretion system AMD22_RS21040 PF00069 Protein kinase domain AMD22_RS21040 PF03793 PASTA domain AMD22_RS21055 PF06761 Intracellular multiplication and human macrophage-killing AMD22_RS21055 PF14331 ImcF-related N-terminal domain AMD22_RS21055 PF06744 Type VI secretion protein IcmF C-terminal AMD22_RS21065 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AMD22_RS21080 PF04717 Type VI secretion system, phage-baseplate injector AMD22_RS21095 PF03793 PASTA domain AMD22_RS21095 PF00069 Protein kinase domain AMD22_RS21105 PF08281 Sigma-70, region 4 AMD22_RS21105 PF04542 Sigma-70 region 2 AMD22_RS21120 PF00328 Histidine phosphatase superfamily (branch 2) AMD22_RS21150 PF07724 AAA domain (Cdc48 subfamily) AMD22_RS21150 PF17871 AAA lid domain AMD22_RS21150 PF10431 C-terminal, D2-small domain, of ClpB protein AMD22_RS21150 PF00004 ATPase family associated with various cellular activities (AAA) AMD22_RS21160 PF05947 Type VI secretion system, TssF AMD22_RS21165 PF04965 Gene 25-like lysozyme AMD22_RS21170 PF07024 ImpE protein AMD22_RS21175 PF05638 Type VI secretion system effector, Hcp AMD22_RS21180 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMD22_RS21185 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMD22_RS21200 PF12464 Maltose acetyltransferase AMD22_RS21200 PF14602 Hexapeptide repeat of succinyl-transferase AMD22_RS21205 PF13361 UvrD-like helicase C-terminal domain AMD22_RS21205 PF00580 UvrD/REP helicase N-terminal domain AMD22_RS21220 PF13091 PLD-like domain AMD22_RS21220 PF13396 Phospholipase_D-nuclease N-terminal AMD22_RS21225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS21225 PF03466 LysR substrate binding domain AMD22_RS21230 PF03737 Aldolase/RraA AMD22_RS21235 PF04303 PrpF protein AMD22_RS21240 PF04909 Amidohydrolase AMD22_RS21245 PF00471 Ribosomal protein L33 AMD22_RS21250 PF00830 Ribosomal L28 family AMD22_RS21255 PF00873 AcrB/AcrD/AcrF family AMD22_RS21260 PF13533 Biotin-lipoyl like AMD22_RS21280 PF02527 rRNA small subunit methyltransferase G AMD22_RS21285 PF16655 PhoD-like phosphatase, N-terminal domain AMD22_RS21285 PF09423 PhoD-like phosphatase AMD22_RS21290 PF09423 PhoD-like phosphatase AMD22_RS21290 PF16655 PhoD-like phosphatase, N-terminal domain AMD22_RS21295 PF01648 4'-phosphopantetheinyl transferase superfamily AMD22_RS21305 PF04226 Transglycosylase associated protein AMD22_RS21315 PF03372 Endonuclease/Exonuclease/phosphatase family AMD22_RS21320 PF00480 ROK family AMD22_RS21330 PF09312 SurA N-terminal domain AMD22_RS21340 PF00474 Sodium:solute symporter family AMD22_RS21345 PF04341 Protein of unknown function, DUF485 AMD22_RS21355 PF00501 AMP-binding enzyme AMD22_RS21355 PF13193 AMP-binding enzyme C-terminal domain AMD22_RS21355 PF16177 Acetyl-coenzyme A synthetase N-terminus AMD22_RS21360 PF00196 Bacterial regulatory proteins, luxR family AMD22_RS21360 PF00072 Response regulator receiver domain AMD22_RS21385 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD22_RS21385 PF04616 Glycosyl hydrolases family 43 AMD22_RS21395 PF00248 Aldo/keto reductase family AMD22_RS21410 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD22_RS21415 PF13378 Enolase C-terminal domain-like AMD22_RS21415 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD22_RS21425 PF05336 L-rhamnose mutarotase AMD22_RS21430 PF07690 Major Facilitator Superfamily AMD22_RS21435 PF09339 IclR helix-turn-helix domain AMD22_RS21435 PF01614 Bacterial transcriptional regulator AMD22_RS21440 PF02659 Putative manganese efflux pump AMD22_RS21445 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS21445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS21460 PF06165 Glycosyltransferase family 36 AMD22_RS21460 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AMD22_RS21475 PF13570 PQQ-like domain AMD22_RS21475 PF13360 PQQ-like domain AMD22_RS21475 PF01011 PQQ enzyme repeat AMD22_RS21495 PF04357 TamB, inner membrane protein subunit of TAM complex AMD22_RS21500 PF17243 POTRA domain TamA domain 1 AMD22_RS21500 PF01103 Surface antigen AMD22_RS21530 PF00005 ABC transporter AMD22_RS21530 PF03412 Peptidase C39 family AMD22_RS21530 PF00664 ABC transporter transmembrane region AMD22_RS21535 PF05746 DALR anticodon binding domain AMD22_RS21535 PF02092 Glycyl-tRNA synthetase beta subunit AMD22_RS21540 PF02091 Glycyl-tRNA synthetase alpha subunit AMD22_RS21545 PF00437 Type II/IV secretion system protein AMD22_RS21545 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD22_RS21555 PF00958 GMP synthase C terminal domain AMD22_RS21555 PF00117 Glutamine amidotransferase class-I AMD22_RS21565 PF00902 Sec-independent protein translocase protein (TatC) AMD22_RS21570 PF02416 mttA/Hcf106 family AMD22_RS21575 PF02416 mttA/Hcf106 family AMD22_RS21585 PF00762 Ferrochelatase AMD22_RS21590 PF12697 Alpha/beta hydrolase family AMD22_RS21605 PF04381 Putative exonuclease, RdgC AMD22_RS21610 PF01171 PP-loop family AMD22_RS21620 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS21625 PF07488 Glycosyl hydrolase family 67 middle domain AMD22_RS21625 PF03648 Glycosyl hydrolase family 67 N-terminus AMD22_RS21625 PF07477 Glycosyl hydrolase family 67 C-terminus AMD22_RS21635 PF13378 Enolase C-terminal domain-like AMD22_RS21635 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD22_RS21640 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD22_RS21640 PF04616 Glycosyl hydrolases family 43 AMD22_RS21645 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD22_RS21645 PF14310 Fibronectin type III-like domain AMD22_RS21645 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD22_RS21645 PF07691 PA14 domain AMD22_RS21650 PF01232 Mannitol dehydrogenase Rossmann domain AMD22_RS21650 PF08125 Mannitol dehydrogenase C-terminal domain AMD22_RS21675 PF00171 Aldehyde dehydrogenase family AMD22_RS21700 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD22_RS21700 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD22_RS21725 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD22_RS21730 PF00331 Glycosyl hydrolase family 10 AMD22_RS21735 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD22_RS21735 PF00703 Glycosyl hydrolases family 2 AMD22_RS21735 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD22_RS21735 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD22_RS21735 PF16355 Domain of unknown function (DUF4982) AMD22_RS21740 PF02614 Glucuronate isomerase AMD22_RS21745 PF00331 Glycosyl hydrolase family 10 AMD22_RS21745 PF00553 Cellulose binding domain AMD22_RS21745 PF03422 Carbohydrate binding module (family 6) AMD22_RS21760 PF00331 Glycosyl hydrolase family 10 AMD22_RS21760 PF00553 Cellulose binding domain AMD22_RS21760 PF03422 Carbohydrate binding module (family 6) AMD22_RS21780 PF04616 Glycosyl hydrolases family 43 AMD22_RS21815 PF14765 Polyketide synthase dehydratase AMD22_RS21815 PF16197 Ketoacyl-synthetase C-terminal extension AMD22_RS21815 PF00107 Zinc-binding dehydrogenase AMD22_RS21815 PF00550 Phosphopantetheine attachment site AMD22_RS21815 PF00698 Acyl transferase domain AMD22_RS21815 PF08659 KR domain AMD22_RS21815 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS21815 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD22_RS21815 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD22_RS21820 PF01553 Acyltransferase AMD22_RS21830 PF00356 Bacterial regulatory proteins, lacI family AMD22_RS21850 PF04820 Tryptophan halogenase AMD22_RS21855 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD22_RS21860 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMD22_RS21865 PF04337 Protein of unknown function, DUF480 AMD22_RS21880 PF00580 UvrD/REP helicase N-terminal domain AMD22_RS21880 PF13361 UvrD-like helicase C-terminal domain AMD22_RS21885 PF00265 Thymidine kinase AMD22_RS21890 PF00512 His Kinase A (phospho-acceptor) domain AMD22_RS21890 PF08446 PAS fold AMD22_RS21890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD22_RS21890 PF01590 GAF domain AMD22_RS21890 PF00360 Phytochrome region AMD22_RS21895 PF04349 Periplasmic glucan biosynthesis protein, MdoG AMD22_RS21905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD22_RS21905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD22_RS21905 PF06827 Zinc finger found in FPG and IleRS AMD22_RS21940 PF03594 Benzoate membrane transport protein AMD22_RS21945 PF00360 Phytochrome region AMD22_RS21945 PF13426 PAS domain AMD22_RS21945 PF08446 PAS fold AMD22_RS21945 PF01590 GAF domain AMD22_RS21950 PF01126 Heme oxygenase AMD22_RS21955 PF07690 Major Facilitator Superfamily AMD22_RS21960 PF01263 Aldose 1-epimerase AMD22_RS21970 PF02810 SEC-C motif AMD22_RS21975 PF01925 Sulfite exporter TauE/SafE AMD22_RS21995 PF01227 GTP cyclohydrolase I AMD22_RS22005 PF07869 Protein of unknown function (DUF1656) AMD22_RS22010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD22_RS22010 PF00529 HlyD membrane-fusion protein of T1SS AMD22_RS22015 PF02321 Outer membrane efflux protein AMD22_RS22020 PF04632 Fusaric acid resistance protein family AMD22_RS22025 PF00083 Sugar (and other) transporter AMD22_RS22030 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMD22_RS22035 PF13091 PLD-like domain AMD22_RS22035 PF13396 Phospholipase_D-nuclease N-terminal AMD22_RS22060 PF01850 PIN domain AMD22_RS22085 PF00849 RNA pseudouridylate synthase AMD22_RS22120 PF02785 Biotin carboxylase C-terminal domain AMD22_RS22120 PF00289 Biotin carboxylase, N-terminal domain AMD22_RS22120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD22_RS22125 PF01425 Amidase AMD22_RS22155 PF13538 UvrD-like helicase C-terminal domain AMD22_RS22160 PF12705 PD-(D/E)XK nuclease superfamily AMD22_RS22160 PF00580 UvrD/REP helicase N-terminal domain AMD22_RS22160 PF13361 UvrD-like helicase C-terminal domain AMD22_RS22165 PF17946 RecC C-terminal domain AMD22_RS22180 PF00005 ABC transporter AMD22_RS22185 PF02405 Permease MlaE AMD22_RS22190 PF02470 MlaD protein AMD22_RS22195 PF05494 MlaC protein AMD22_RS22205 PF04333 MlaA lipoprotein AMD22_RS22215 PF00255 Glutathione peroxidase AMD22_RS22225 PF02646 RmuC family AMD22_RS22230 PF08240 Alcohol dehydrogenase GroES-like domain AMD22_RS22230 PF00107 Zinc-binding dehydrogenase AMD22_RS22235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD22_RS22235 PF03466 LysR substrate binding domain AMD22_RS22245 PF00043 Glutathione S-transferase, C-terminal domain AMD22_RS22245 PF13417 Glutathione S-transferase, N-terminal domain AMD22_RS22255 PF13520 Amino acid permease AMD22_RS22260 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD22_RS22260 PF07971 Glycosyl hydrolase family 92 AMD22_RS22265 PF10947 Protein of unknown function (DUF2628) AMD22_RS22270 PF00990 Diguanylate cyclase, GGDEF domain AMD22_RS22275 PF13556 PucR C-terminal helix-turn-helix domain AMD22_RS22275 PF17853 GGDEF-like domain AMD22_RS22275 PF05651 Putative sugar diacid recognition AMD22_RS22280 PF02595 Glycerate kinase family AMD22_RS22285 PF07690 Major Facilitator Superfamily AMD22_RS22300 PF10672 S-adenosylmethionine-dependent methyltransferase AMD22_RS22300 PF17785 PUA-like domain AMD22_RS22305 PF03741 Integral membrane protein TerC family AMD22_RS22310 PF01694 Rhomboid family AMD22_RS22315 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD22_RS22325 PF01569 PAP2 superfamily AMD22_RS22330 PF10396 GTP-binding protein TrmE N-terminus AMD22_RS22330 PF12631 MnmE helical domain AMD22_RS22330 PF01926 50S ribosome-binding GTPase AMD22_RS22335 PF01522 Polysaccharide deacetylase AMD22_RS22345 PF02096 60Kd inner membrane protein AMD22_RS22345 PF14849 YidC periplasmic domain AMD22_RS22350 PF00825 Ribonuclease P AMD22_RS22355 PF00468 Ribosomal protein L34