locus-tag	class	description
AMD20_RS00355	COG0493	'glutamate synthase
AMD20_RS00390	COG0067	glutamate synthase
AMD20_RS00390	COG0069	glutamate synthase activity
AMD20_RS00390	COG0070	glutamate synthase
AMD20_RS00500	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AMD20_RS00510	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMD20_RS00515	COG0187	DNA topoisomerase II activity
AMD20_RS00525	COG0501	Belongs to the peptidase M48B family
AMD20_RS00555	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AMD20_RS00565	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD20_RS00610	COG0793	Belongs to the peptidase S41A family
AMD20_RS00615	COG4942	peptidase
AMD20_RS00625	COG2234	aminopeptidase activity
AMD20_RS00635	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD20_RS00640	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD20_RS00645	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD20_RS00650	COG1064	alcohol dehydrogenase
AMD20_RS00655	COG0493	'glutamate synthase
AMD20_RS00660	COG0069	glutamate synthase activity
AMD20_RS00660	COG0070	glutamate synthase
AMD20_RS00660	COG0067	glutamate synthase
AMD20_RS00705	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AMD20_RS00720	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
AMD20_RS00725	COG0297	glycogen (starch) synthase activity
AMD20_RS00725	COG0438	transferase activity, transferring glycosyl groups
AMD20_RS00745	COG0367	asparagine synthase
AMD20_RS00775	COG1132	(ABC) transporter
AMD20_RS00805	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AMD20_RS00885	COG1111	helicase
AMD20_RS00885	COG1205	dead DEAH box helicase
AMD20_RS00890	COG1272	protein, Hemolysin III
AMD20_RS00905	COG0300	oxidoreductase activity
AMD20_RS00910	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS00930	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMD20_RS00990	COG3237	CsbD-like
AMD20_RS01040	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD20_RS01050	COG0477	Major facilitator Superfamily
AMD20_RS01090	COG0714	Associated with various cellular activities
AMD20_RS01120	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AMD20_RS01130	COG4772	TonB-dependent receptor
AMD20_RS01140	COG0662	Cupin 2, conserved barrel domain protein
AMD20_RS01145	COG1012	belongs to the aldehyde dehydrogenase family
AMD20_RS01170	COG1304	FMN binding
AMD20_RS01185	COG4585	Histidine kinase
AMD20_RS01190	COG2197	response regulator
AMD20_RS01210	COG3710	Transcriptional regulator
AMD20_RS01215	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMD20_RS01285	COG2801	Transposase and inactivated derivatives
AMD20_RS01290	COG0366	Alpha amylase catalytic
AMD20_RS01295	COG0366	Alpha amylase catalytic
AMD20_RS01300	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMD20_RS01320	COG0657	acetylesterase activity
AMD20_RS01320	COG2755	lipolytic protein G-D-S-L family
AMD20_RS01330	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMD20_RS01345	COG3507	Belongs to the glycosyl hydrolase 43 family
AMD20_RS01350	COG1609	Transcriptional regulator
AMD20_RS01355	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
AMD20_RS01360	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS01370	COG2755	lipolytic protein G-D-S-L family
AMD20_RS01385	COG3186	Phenylalanine-4-hydroxylase
AMD20_RS01390	COG1522	sequence-specific DNA binding
AMD20_RS01400	COG1752	Esterase of the alpha-beta hydrolase superfamily
AMD20_RS01410	COG1119	ATPase activity
AMD20_RS01425	COG1125	glycine betaine transport
AMD20_RS01440	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AMD20_RS01460	COG1396	sequence-specific DNA binding
AMD20_RS01485	COG0489	protein tyrosine kinase activity
AMD20_RS01490	COG2062	phosphohistidine phosphatase, SixA
AMD20_RS01500	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD20_RS01545	COG1968	undecaprenyl-diphosphatase activity
AMD20_RS01550	COG0174	glutamine synthetase
AMD20_RS01555	COG0347	Belongs to the P(II) protein family
AMD20_RS01560	COG0004	ammonium transporteR
AMD20_RS01565	COG3852	Histidine kinase
AMD20_RS01570	COG2204	response regulator
AMD20_RS01575	COG2032	superoxide dismutase activity
AMD20_RS01580	COG2032	superoxide dismutase activity
AMD20_RS01585	COG0346	lactoylglutathione lyase activity
AMD20_RS01595	COG0183	Belongs to the thiolase family
AMD20_RS01630	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMD20_RS01635	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AMD20_RS01640	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AMD20_RS01650	COG0028	Belongs to the TPP enzyme family
AMD20_RS01655	COG2205	protein histidine kinase activity
AMD20_RS01680	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AMD20_RS01695	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD20_RS01705	COG0596	Alpha beta hydrolase
AMD20_RS01710	COG0727	PFAM Uncharacterised protein family (UPF0153)
AMD20_RS01715	COG0318	PFAM AMP-dependent synthetase and ligase
AMD20_RS01720	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMD20_RS01735	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMD20_RS01745	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMD20_RS01755	COG0564	pseudouridine synthase activity
AMD20_RS01780	COG0339	signal peptide processing
AMD20_RS01810	COG0475	glutathione-regulated potassium exporter activity
AMD20_RS01815	COG0583	DNA-binding transcription factor activity
AMD20_RS01820	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AMD20_RS01825	COG2224	Isocitrate lyase
AMD20_RS01855	COG4770	biotin carboxylase activity
AMD20_RS01860	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMD20_RS01865	COG1960	acyl-CoA dehydrogenase activity
AMD20_RS01920	COG0523	cobalamin synthesis protein
AMD20_RS01935	COG0697	spore germination
AMD20_RS01945	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMD20_RS01950	COG1846	Transcriptional regulator
AMD20_RS01955	COG1764	response to oxidative stress
AMD20_RS01985	COG2130	NADP-dependent
AMD20_RS02000	COG1187	pseudouridine synthase activity
AMD20_RS02015	COG1643	Atp-dependent helicase
AMD20_RS02025	COG4807	Protein conserved in bacteria
AMD20_RS02030	COG2351	hydroxyisourate hydrolase activity
AMD20_RS02035	COG2072	flavoprotein involved in K transport
AMD20_RS02055	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AMD20_RS02090	COG1957	nucleoside hydrolase
AMD20_RS02100	COG2252	PERMEase
AMD20_RS02125	COG0084	hydrolase, TatD family'
AMD20_RS02140	COG0583	DNA-binding transcription factor activity
AMD20_RS02145	COG2814	Major facilitator Superfamily
AMD20_RS02160	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AMD20_RS02165	COG1902	pentaerythritol trinitrate reductase activity
AMD20_RS02185	COG0745	RESPONSE REGULATOR receiver
AMD20_RS02190	COG2205	protein histidine kinase activity
AMD20_RS02195	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD20_RS02215	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMD20_RS02220	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMD20_RS02225	COG0583	DNA-binding transcription factor activity
AMD20_RS02255	COG0702	epimerase
AMD20_RS02260	COG1733	regulation of RNA biosynthetic process
AMD20_RS02285	COG2801	Transposase and inactivated derivatives
AMD20_RS02300	COG0129	dihydroxy-acid dehydratase activity
AMD20_RS02320	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AMD20_RS02375	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AMD20_RS02380	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMD20_RS02405	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AMD20_RS02410	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AMD20_RS02420	COG3485	protocatechuate 3,4-dioxygenase
AMD20_RS02425	COG3485	protocatechuate 3,4-dioxygenase
AMD20_RS02435	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMD20_RS02440	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMD20_RS02450	COG1414	Transcriptional regulator
AMD20_RS02460	COG0657	acetylesterase activity
AMD20_RS02470	COG0445	tRNA wobble uridine modification
AMD20_RS02480	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMD20_RS02510	COG2267	carboxylic ester hydrolase activity
AMD20_RS02520	COG0156	8-amino-7-oxononanoate synthase activity
AMD20_RS02525	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AMD20_RS02530	COG1040	competence protein
AMD20_RS02535	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMD20_RS02610	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMD20_RS02680	COG1511	domain protein
AMD20_RS02680	COG3264	Mechanosensitive ion channel
AMD20_RS02685	COG1368	sulfuric ester hydrolase activity
AMD20_RS02690	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMD20_RS02695	COG2354	Protein conserved in bacteria
AMD20_RS02705	COG0297	glycogen (starch) synthase activity
AMD20_RS02710	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMD20_RS02715	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMD20_RS02740	COG0702	epimerase
AMD20_RS02745	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS02780	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD20_RS02785	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS02795	COG0513	Belongs to the DEAD box helicase family
AMD20_RS02815	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AMD20_RS02825	COG3483	tryptophan 2,3-dioxygenase activity
AMD20_RS02830	COG3104	oligopeptide transport
AMD20_RS02850	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AMD20_RS02865	COG1320	monovalent cation:proton antiporter activity
AMD20_RS02870	COG2212	antiporter activity
AMD20_RS02880	COG0651	ATP synthesis coupled electron transport
AMD20_RS02885	COG1006	Multisubunit Na H antiporter MnhC subunit
AMD20_RS02890	COG2111	Na H antiporter
AMD20_RS02890	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMD20_RS02910	COG3179	chitinase
AMD20_RS02930	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AMD20_RS02935	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AMD20_RS02950	COG0456	acetyltransferase
AMD20_RS02955	COG1597	lipid kinase activity
AMD20_RS02980	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMD20_RS02985	COG0134	indole-3-glycerol-phosphate synthase activity
AMD20_RS02995	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD20_RS03000	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
AMD20_RS03010	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
AMD20_RS03020	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AMD20_RS03035	COG1051	belongs to the nudix hydrolase family
AMD20_RS03075	COG0316	Belongs to the HesB IscA family
AMD20_RS03100	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AMD20_RS03120	COG2814	Major facilitator Superfamily
AMD20_RS03125	COG0583	DNA-binding transcription factor activity
AMD20_RS03130	COG2814	Major facilitator Superfamily
AMD20_RS03135	COG1289	transmembrane transporter activity
AMD20_RS03145	COG0151	Belongs to the GarS family
AMD20_RS03155	COG0138	bifunctional purine biosynthesis protein purh
AMD20_RS03160	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMD20_RS03165	COG2267	carboxylic ester hydrolase activity
AMD20_RS03170	COG0671	phosphoesterase, PA-phosphatase related
AMD20_RS03170	COG2453	phosphatase
AMD20_RS03195	COG4589	Belongs to the CDS family
AMD20_RS03200	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AMD20_RS03225	COG2264	protein methyltransferase activity
AMD20_RS03240	COG0439	Biotin carboxylase
AMD20_RS03250	COG0511	ligase activity, forming carbon-carbon bonds
AMD20_RS03255	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AMD20_RS03265	COG1324	tolerance protein
AMD20_RS03290	COG0300	oxidoreductase activity
AMD20_RS03295	COG2356	endonuclease I
AMD20_RS03305	COG0459	protein refolding
AMD20_RS03320	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AMD20_RS03335	COG3386	PFAM SMP-30 Gluconolaconase
AMD20_RS03345	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AMD20_RS03350	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AMD20_RS03370	COG0778	Nitroreductase
AMD20_RS03375	COG2353	YceI-like domain
AMD20_RS03405	COG3052	prosthetic group binding
AMD20_RS03430	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMD20_RS03440	COG1802	Transcriptional regulator
AMD20_RS03485	COG2801	Transposase and inactivated derivatives
AMD20_RS03495	COG4221	oxidoreductase activity
AMD20_RS03510	COG4221	oxidoreductase activity
AMD20_RS03520	COG0435	Glutathione S-transferase
AMD20_RS03545	COG2409	Drug exporters of the RND superfamily
AMD20_RS03550	COG1506	peptidase
AMD20_RS03550	COG0823	Involved in the tonB-independent uptake of proteins
AMD20_RS03590	COG0697	spore germination
AMD20_RS03605	COG1113	amino acid transport
AMD20_RS03625	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
AMD20_RS03660	COG5001	Diguanylate cyclase
AMD20_RS03665	COG0840	transmembrane signaling receptor activity
AMD20_RS03670	COG5297	Belongs to the glycosyl hydrolase family 6
AMD20_RS03670	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD20_RS03675	COG0659	secondary active sulfate transmembrane transporter activity
AMD20_RS03700	COG2943	transferase activity, transferring hexosyl groups
AMD20_RS03710	COG3275	phosphorelay sensor kinase activity
AMD20_RS03720	COG0181	hydroxymethylbilane synthase activity
AMD20_RS03745	COG1505	serine-type exopeptidase activity
AMD20_RS03750	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMD20_RS03755	COG0436	Aminotransferase
AMD20_RS03765	COG2832	Protein of unknown function (DUF454)
AMD20_RS03775	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMD20_RS03785	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AMD20_RS03790	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AMD20_RS03795	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AMD20_RS03820	COG2226	methyltransferase
AMD20_RS03825	COG5001	Diguanylate cyclase
AMD20_RS03825	COG3300	MHYT domain
AMD20_RS03830	COG0308	aminopeptidase N
AMD20_RS03880	COG3284	Transcriptional regulator
AMD20_RS03885	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD20_RS03890	COG1077	Cell shape determining protein MreB Mrl
AMD20_RS03895	COG1792	Involved in formation and maintenance of cell shape
AMD20_RS03910	COG0772	Belongs to the SEDS family
AMD20_RS03920	COG2951	lytic endotransglycosylase activity
AMD20_RS03925	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMD20_RS03935	COG1686	Belongs to the peptidase S11 family
AMD20_RS03945	COG2921	Belongs to the UPF0250 family
AMD20_RS03950	COG0321	lipoyl(octanoyl) transferase activity
AMD20_RS03955	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMD20_RS03970	COG0583	DNA-binding transcription factor activity
AMD20_RS03980	COG1051	belongs to the nudix hydrolase family
AMD20_RS03980	COG1056	cytidyltransferase-related domain
AMD20_RS04015	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
AMD20_RS04020	COG0673	inositol 2-dehydrogenase activity
AMD20_RS04025	COG2823	Periplasmic or secreted lipoprotein
AMD20_RS04030	COG4251	negative regulation of phosphorylation
AMD20_RS04035	COG0784	Response regulator, receiver
AMD20_RS04040	COG4191	Histidine kinase
AMD20_RS04045	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AMD20_RS04050	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS04100	COG1459	type II secretion system
AMD20_RS04165	COG2188	Transcriptional regulator
AMD20_RS04175	COG1609	Transcriptional regulator
AMD20_RS04180	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMD20_RS04185	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AMD20_RS04195	COG0617	tRNA 3'-terminal CCA addition
AMD20_RS04200	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
AMD20_RS04205	COG1012	belongs to the aldehyde dehydrogenase family
AMD20_RS04210	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMD20_RS04220	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMD20_RS04235	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AMD20_RS04240	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMD20_RS04255	COG2205	protein histidine kinase activity
AMD20_RS04285	COG3791	Glutathione-dependent formaldehyde-activating
AMD20_RS04300	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMD20_RS04310	COG0697	spore germination
AMD20_RS04320	COG0488	(ABC) transporter
AMD20_RS04330	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMD20_RS04335	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AMD20_RS04345	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMD20_RS04345	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMD20_RS04365	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AMD20_RS04370	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMD20_RS04375	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AMD20_RS04395	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AMD20_RS04400	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AMD20_RS04405	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
AMD20_RS04410	COG2205	protein histidine kinase activity
AMD20_RS04415	COG0745	RESPONSE REGULATOR receiver
AMD20_RS04430	COG0277	FAD linked oxidase domain protein
AMD20_RS04435	COG1988	membrane-bound metal-dependent
AMD20_RS04440	COG0792	nuclease activity
AMD20_RS04470	COG0275	rRNA processing
AMD20_RS04475	COG3116	cell division
AMD20_RS04485	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMD20_RS04490	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMD20_RS04495	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMD20_RS04505	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AMD20_RS04510	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMD20_RS04515	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMD20_RS04520	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AMD20_RS04535	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AMD20_RS04545	COG0739	heme binding
AMD20_RS04550	COG0653	protein targeting
AMD20_RS04555	COG0494	nUDIX hydrolase
AMD20_RS04565	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMD20_RS04575	COG3321	synthase
AMD20_RS04575	COG0604	alcohol dehydrogenase
AMD20_RS04575	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS04595	COG0366	Alpha amylase catalytic
AMD20_RS04625	COG2226	methyltransferase
AMD20_RS04630	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AMD20_RS04640	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AMD20_RS04675	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AMD20_RS04685	COG4106	trans-aconitate 2-methyltransferase activity
AMD20_RS04690	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMD20_RS04700	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD20_RS04705	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AMD20_RS04710	COG0667	Aldo Keto reductase
AMD20_RS04720	COG4771	TonB-dependent receptor
AMD20_RS04740	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMD20_RS04745	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AMD20_RS04755	COG2175	clavaminate synthase activity
AMD20_RS04765	COG4181	ATPase activity
AMD20_RS04780	COG0642	Histidine kinase
AMD20_RS04790	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AMD20_RS04810	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AMD20_RS04815	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMD20_RS04830	COG3829	transcription factor binding
AMD20_RS04840	COG1116	anion transmembrane transporter activity
AMD20_RS04845	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMD20_RS04855	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMD20_RS04860	COG0431	NADPH-dependent FMN reductase
AMD20_RS04885	COG0747	negative chemotaxis
AMD20_RS04895	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMD20_RS04905	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMD20_RS04910	COG2967	ApaG domain
AMD20_RS04915	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMD20_RS04920	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AMD20_RS04925	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMD20_RS04930	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AMD20_RS04940	COG0123	including yeast histone deacetylase and acetoin utilization protein
AMD20_RS04945	COG2096	Adenosyltransferase
AMD20_RS04955	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD20_RS04960	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD20_RS04990	COG3384	dioxygenase
AMD20_RS04995	COG0583	DNA-binding transcription factor activity
AMD20_RS05010	COG1024	Enoyl-CoA hydratase
AMD20_RS05030	COG3386	PFAM SMP-30 Gluconolaconase
AMD20_RS05040	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
AMD20_RS05065	COG0697	spore germination
AMD20_RS05075	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMD20_RS05095	COG2205	protein histidine kinase activity
AMD20_RS05095	COG5002	protein histidine kinase activity
AMD20_RS05095	COG0784	Response regulator, receiver
AMD20_RS05100	COG2197	response regulator
AMD20_RS05110	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMD20_RS05120	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AMD20_RS05125	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMD20_RS05130	COG0583	DNA-binding transcription factor activity
AMD20_RS05135	COG3634	alkyl hydroperoxide reductase activity
AMD20_RS05145	COG2890	protein-(glutamine-N5) methyltransferase activity
AMD20_RS05165	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMD20_RS05165	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMD20_RS05195	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AMD20_RS05225	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AMD20_RS05240	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMD20_RS05245	COG1404	Belongs to the peptidase S8 family
AMD20_RS05250	COG1404	Belongs to the peptidase S8 family
AMD20_RS05255	COG1404	Belongs to the peptidase S8 family
AMD20_RS05260	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AMD20_RS05285	COG1295	ribonuclease BN
AMD20_RS05290	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD20_RS05295	COG1254	Belongs to the acylphosphatase family
AMD20_RS05310	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMD20_RS05320	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AMD20_RS05325	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AMD20_RS05335	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AMD20_RS05340	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AMD20_RS05350	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMD20_RS05355	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AMD20_RS05360	COG0193	aminoacyl-tRNA hydrolase activity
AMD20_RS05365	COG0012	GTP binding
AMD20_RS05385	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMD20_RS05400	COG0250	Participates in transcription elongation, termination and antitermination
AMD20_RS05405	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMD20_RS05410	COG0081	regulation of translation
AMD20_RS05415	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AMD20_RS05420	COG0222	ribosome binding
AMD20_RS05425	COG0085	RNA polymerase activity
AMD20_RS05430	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AMD20_RS05435	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AMD20_RS05440	COG0049	tRNA binding
AMD20_RS05445	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMD20_RS05450	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMD20_RS05455	COG0051	transcription antitermination factor activity, RNA binding
AMD20_RS05460	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AMD20_RS05465	COG0088	Forms part of the polypeptide exit tunnel
AMD20_RS05470	COG0089	rRNA binding
AMD20_RS05475	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AMD20_RS05480	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AMD20_RS05490	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AMD20_RS05495	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AMD20_RS05500	COG0255	Belongs to the universal ribosomal protein uL29 family
AMD20_RS05505	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AMD20_RS05515	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AMD20_RS05520	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AMD20_RS05530	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AMD20_RS05535	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AMD20_RS05540	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AMD20_RS05550	COG1841	ribosomal large subunit assembly
AMD20_RS05555	COG0200	Binds to the 23S rRNA
AMD20_RS05560	COG0201	protein transport
AMD20_RS05585	COG0203	ribosomal protein L17
AMD20_RS05590	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AMD20_RS05605	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
AMD20_RS05615	COG0154	amidase activity
AMD20_RS05625	COG1217	gtp-binding protein TYPA
AMD20_RS05630	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMD20_RS05635	COG0039	L-malate dehydrogenase activity
AMD20_RS05640	COG0625	glutathione transferase activity
AMD20_RS05650	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMD20_RS05650	COG1902	pentaerythritol trinitrate reductase activity
AMD20_RS05655	COG0604	alcohol dehydrogenase
AMD20_RS05685	COG0156	8-amino-7-oxononanoate synthase activity
AMD20_RS05690	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AMD20_RS05695	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AMD20_RS05700	COG4208	sulfate ABC transporter
AMD20_RS05705	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AMD20_RS05715	COG1063	alcohol dehydrogenase
AMD20_RS05745	COG0406	alpha-ribazole phosphatase activity
AMD20_RS05750	COG0285	dihydrofolate synthase activity
AMD20_RS05770	COG2833	Protein of unknown function (DUF455)
AMD20_RS05780	COG3291	Pkd domain containing protein
AMD20_RS05790	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD20_RS05795	COG0671	phosphoesterase, PA-phosphatase related
AMD20_RS05800	COG0438	transferase activity, transferring glycosyl groups
AMD20_RS05810	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AMD20_RS05825	COG4783	chaperone-mediated protein folding
AMD20_RS05840	COG0473	3-isopropylmalate dehydrogenase activity
AMD20_RS05970	COG2801	Transposase and inactivated derivatives
AMD20_RS05985	COG3852	Histidine kinase
AMD20_RS05995	COG0544	peptidyl-prolyl cis-trans isomerase activity
AMD20_RS06005	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AMD20_RS06035	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMD20_RS06045	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD20_RS06055	COG0328	RNA-DNA hybrid ribonuclease activity
AMD20_RS06060	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMD20_RS06065	COG0631	protein serine/threonine phosphatase activity
AMD20_RS06080	COG0859	PFAM glycosyl transferase family 9
AMD20_RS06085	COG3642	lipopolysaccharide core region biosynthetic process
AMD20_RS06090	COG1234	tRNA 3'-trailer cleavage
AMD20_RS06095	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMD20_RS06105	COG0315	cyclic pyranopterin monophosphate synthase activity
AMD20_RS06110	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AMD20_RS06115	COG0314	molybdopterin synthase activity
AMD20_RS06170	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AMD20_RS06175	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AMD20_RS06180	COG0537	adenosine 5'-monophosphoramidase activity
AMD20_RS06200	COG0714	Associated with various cellular activities
AMD20_RS06220	COG0424	maF-like protein
AMD20_RS06225	COG1399	metal-binding, possibly nucleic acid-binding protein
AMD20_RS06230	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AMD20_RS06235	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD20_RS06250	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS06265	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AMD20_RS06270	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMD20_RS06295	COG3829	transcription factor binding
AMD20_RS06315	COG3609	addiction module antidote protein, CC2985 family
AMD20_RS06335	COG2373	Large extracellular alpha-helical protein
AMD20_RS06350	COG4953	penicillin-binding protein 1C
AMD20_RS06360	COG0678	peroxiredoxin activity
AMD20_RS06380	COG0330	HflC and HflK could
AMD20_RS06385	COG0330	HflC and HflK could
AMD20_RS06395	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AMD20_RS06400	COG0308	aminopeptidase N
AMD20_RS06410	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS06415	COG1309	transcriptional regulator
AMD20_RS06485	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMD20_RS06495	COG3387	PFAM Glycoside hydrolase 15-related
AMD20_RS06500	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS06505	COG3537	Alpha-1,2-mannosidase
AMD20_RS06525	COG0492	ferredoxin-NADP+ reductase activity
AMD20_RS06550	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMD20_RS06555	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AMD20_RS06560	COG2080	2 iron, 2 sulfur cluster binding
AMD20_RS06595	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMD20_RS06610	COG0587	DNA-directed DNA polymerase activity
AMD20_RS06640	COG0823	Involved in the tonB-independent uptake of proteins
AMD20_RS06640	COG1506	peptidase
AMD20_RS06655	COG2207	Transcriptional regulator
AMD20_RS06655	COG1917	Cupin 2, conserved barrel domain protein
AMD20_RS06670	COG0753	catalase activity
AMD20_RS06675	COG0656	L-ascorbic acid biosynthetic process
AMD20_RS06685	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMD20_RS06685	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMD20_RS06690	COG2814	Major facilitator Superfamily
AMD20_RS06705	COG2194	sulfuric ester hydrolase activity
AMD20_RS06720	COG0745	RESPONSE REGULATOR receiver
AMD20_RS06725	COG0642	Histidine kinase
AMD20_RS06735	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AMD20_RS06740	COG2894	cell division
AMD20_RS06745	COG0850	regulation of cytokinetic process
AMD20_RS06760	COG4585	Histidine kinase
AMD20_RS06765	COG2197	response regulator
AMD20_RS06780	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
AMD20_RS06805	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AMD20_RS06815	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AMD20_RS06835	COG1946	Acyl-CoA thioesterase
AMD20_RS06850	COG0824	Thioesterase
AMD20_RS06855	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AMD20_RS06860	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AMD20_RS06865	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AMD20_RS06870	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AMD20_RS06875	COG0268	Binds directly to 16S ribosomal RNA
AMD20_RS06885	COG0196	riboflavin kinase activity
AMD20_RS06890	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AMD20_RS06895	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AMD20_RS06900	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AMD20_RS06915	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMD20_RS06920	COG1845	cytochrome c oxidase, subunit III
AMD20_RS06925	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AMD20_RS06940	COG3152	Membrane
AMD20_RS06950	COG2207	Transcriptional regulator
AMD20_RS06955	COG0326	Molecular chaperone. Has ATPase activity
AMD20_RS06965	COG1366	Belongs to the anti-sigma-factor antagonist family
AMD20_RS06970	COG1366	Belongs to the anti-sigma-factor antagonist family
AMD20_RS06975	COG2172	sigma factor antagonist activity
AMD20_RS07000	COG4771	TonB-dependent receptor
AMD20_RS07010	COG5507	3-demethylubiquinone-9 3-methyltransferase
AMD20_RS07015	COG2205	protein histidine kinase activity
AMD20_RS07025	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMD20_RS07030	COG4999	Histidine kinase
AMD20_RS07030	COG3850	Histidine kinase
AMD20_RS07030	COG3437	response regulator, receiver
AMD20_RS07030	COG2205	protein histidine kinase activity
AMD20_RS07035	COG4191	Histidine kinase
AMD20_RS07035	COG0784	Response regulator, receiver
AMD20_RS07065	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMD20_RS07070	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMD20_RS07080	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMD20_RS07085	COG0228	four-way junction DNA binding
AMD20_RS07090	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AMD20_RS07095	COG0336	Belongs to the RNA methyltransferase TrmD family
AMD20_RS07100	COG0335	large ribosomal subunit rRNA binding
AMD20_RS07130	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
AMD20_RS07140	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AMD20_RS07150	COG3209	COG3209 Rhs family protein
AMD20_RS07170	COG3250	beta-galactosidase activity
AMD20_RS07175	COG3867	Arabinogalactan endo-beta-1,4-galactanase
AMD20_RS07195	COG1960	acyl-CoA dehydrogenase activity
AMD20_RS07200	COG1024	Enoyl-CoA hydratase
AMD20_RS07220	COG1024	Enoyl-CoA hydratase
AMD20_RS07220	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMD20_RS07235	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMD20_RS07240	COG0481	GTPase activity
AMD20_RS07255	COG0571	ribonuclease III activity
AMD20_RS07260	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AMD20_RS07265	COG1381	Involved in DNA repair and RecF pathway recombination
AMD20_RS07275	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMD20_RS07280	COG2954	triphosphatase activity
AMD20_RS07285	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AMD20_RS07290	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
AMD20_RS07295	COG3046	protein related to deoxyribodipyrimidine photolyase
AMD20_RS07300	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD20_RS07305	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
AMD20_RS07310	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AMD20_RS07315	COG1278	Cold shock
AMD20_RS07320	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD20_RS07330	COG1201	RNA secondary structure unwinding
AMD20_RS07335	COG1793	dna ligase
AMD20_RS07345	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMD20_RS07345	COG1793	dna ligase
AMD20_RS07375	COG0183	Belongs to the thiolase family
AMD20_RS07395	COG1451	nucleotide metabolic process
AMD20_RS07400	COG5487	UPF0391 membrane protein
AMD20_RS07410	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMD20_RS07430	COG1077	Cell shape determining protein MreB Mrl
AMD20_RS07435	COG1047	Peptidyl-prolyl cis-trans
AMD20_RS07445	COG2824	Alkylphosphonate utilization operon protein PhnA
AMD20_RS07450	COG1902	pentaerythritol trinitrate reductase activity
AMD20_RS07455	COG2814	Major facilitator Superfamily
AMD20_RS07490	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
AMD20_RS07490	COG0392	lysyltransferase activity
AMD20_RS07500	COG0251	oxidation-reduction process
AMD20_RS07505	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMD20_RS07520	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMD20_RS07545	COG1595	DNA-templated transcription, initiation
AMD20_RS07565	COG2878	Part of a membrane complex involved in electron transport
AMD20_RS07575	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD20_RS07575	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD20_RS07590	COG1131	(ABC) transporter
AMD20_RS07595	COG0346	lactoylglutathione lyase activity
AMD20_RS07600	COG0833	amino acid
AMD20_RS07605	COG2040	homocysteine
AMD20_RS07615	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AMD20_RS07635	COG1695	Transcriptional regulator
AMD20_RS07655	COG1981	membrane
AMD20_RS07670	COG0825	malonyl-CoA metabolic process
AMD20_RS07680	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AMD20_RS07685	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD20_RS07690	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD20_RS07695	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD20_RS07700	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD20_RS07715	COG0750	zinc metalloprotease
AMD20_RS07720	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
AMD20_RS07725	COG0575	Belongs to the CDS family
AMD20_RS07730	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AMD20_RS07735	COG0233	cytoplasmic translational termination
AMD20_RS07740	COG0528	UMP kinase activity
AMD20_RS07750	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AMD20_RS07755	COG0052	Belongs to the universal ribosomal protein uS2 family
AMD20_RS07795	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
AMD20_RS07805	COG1393	Belongs to the ArsC family
AMD20_RS07810	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD20_RS07815	COG0367	asparagine synthase
AMD20_RS07825	COG4774	siderophore transport
AMD20_RS07845	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMD20_RS07875	COG1566	PFAM secretion protein HlyD family protein
AMD20_RS07880	COG2814	Major facilitator Superfamily
AMD20_RS07930	COG0339	signal peptide processing
AMD20_RS07935	COG0386	Belongs to the glutathione peroxidase family
AMD20_RS07990	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AMD20_RS07995	COG0084	hydrolase, TatD family'
AMD20_RS08010	COG1960	acyl-CoA dehydrogenase activity
AMD20_RS08030	COG0367	asparagine synthase
AMD20_RS08040	COG0305	Participates in initiation and elongation during chromosome replication
AMD20_RS08045	COG0415	Belongs to the DNA photolyase family
AMD20_RS08055	COG0583	DNA-binding transcription factor activity
AMD20_RS08100	COG3706	GGDEF domain
AMD20_RS08205	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AMD20_RS08220	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD20_RS08230	COG0497	DNA recombination
AMD20_RS08235	COG1420	regulation of RNA biosynthetic process
AMD20_RS08240	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AMD20_RS08245	COG0443	Heat shock 70 kDa protein
AMD20_RS08250	COG0484	heat shock protein binding
AMD20_RS08255	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
AMD20_RS08285	COG0583	DNA-binding transcription factor activity
AMD20_RS08290	COG1132	(ABC) transporter
AMD20_RS08325	COG2850	peptidyl-arginine hydroxylation
AMD20_RS08345	COG1253	flavin adenine dinucleotide binding
AMD20_RS08375	COG1131	(ABC) transporter
AMD20_RS08380	COG1725	Transcriptional regulator
AMD20_RS08385	COG0386	Belongs to the glutathione peroxidase family
AMD20_RS08400	COG2900	Belongs to the SlyX family
AMD20_RS08425	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD20_RS08435	COG0646	methionine synthase
AMD20_RS08435	COG1410	methionine synthase
AMD20_RS08440	COG0646	methionine synthase
AMD20_RS08440	COG1410	methionine synthase
AMD20_RS08445	COG2226	methyltransferase
AMD20_RS08450	COG1960	acyl-CoA dehydrogenase activity
AMD20_RS08465	COG0557	exoribonuclease II activity
AMD20_RS08475	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMD20_RS08485	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMD20_RS08495	COG0704	Plays a role in the regulation of phosphate uptake
AMD20_RS08500	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMD20_RS08505	COG0581	inorganic phosphate transmembrane transporter activity
AMD20_RS08510	COG0573	inorganic phosphate transmembrane transporter activity
AMD20_RS08515	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AMD20_RS08540	COG0659	secondary active sulfate transmembrane transporter activity
AMD20_RS08545	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AMD20_RS08555	COG1024	Enoyl-CoA hydratase
AMD20_RS08565	COG0494	nUDIX hydrolase
AMD20_RS08600	COG0488	(ABC) transporter
AMD20_RS08605	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMD20_RS08605	COG0116	Belongs to the methyltransferase superfamily
AMD20_RS08610	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMD20_RS08635	COG2925	Exonuclease
AMD20_RS08640	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD20_RS08645	COG3844	kynureninase activity
AMD20_RS08655	COG0662	Cupin 2, conserved barrel domain protein
AMD20_RS08660	COG0288	reversible hydration of carbon dioxide
AMD20_RS08720	COG2808	Putative FMN-binding domain
AMD20_RS08740	COG0017	Asparaginyl-tRNA synthetase
AMD20_RS08745	COG0316	Belongs to the HesB IscA family
AMD20_RS08750	COG0360	Binds together with S18 to 16S ribosomal RNA
AMD20_RS08755	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AMD20_RS08760	COG0359	binds to the 23S rRNA
AMD20_RS08770	COG3115	cell septum assembly
AMD20_RS08780	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMD20_RS08785	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMD20_RS08790	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AMD20_RS08800	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
AMD20_RS08810	COG4993	Dehydrogenase
AMD20_RS08820	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AMD20_RS08830	COG2986	histidine ammonia-lyase
AMD20_RS08835	COG1228	amidohydrolase
AMD20_RS08880	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AMD20_RS08885	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AMD20_RS08890	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMD20_RS08895	COG0077	Prephenate dehydratase
AMD20_RS08895	COG1605	Chorismate mutase
AMD20_RS08900	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMD20_RS08915	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AMD20_RS08920	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AMD20_RS08925	COG0583	DNA-binding transcription factor activity
AMD20_RS08940	COG0840	transmembrane signaling receptor activity
AMD20_RS08975	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
AMD20_RS08980	COG0784	Response regulator, receiver
AMD20_RS08980	COG4191	Histidine kinase
AMD20_RS08995	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD20_RS09005	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMD20_RS09015	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMD20_RS09030	COG1595	DNA-templated transcription, initiation
AMD20_RS09085	COG2244	polysaccharide biosynthetic process
AMD20_RS09115	COG2264	protein methyltransferase activity
AMD20_RS09125	COG0438	transferase activity, transferring glycosyl groups
AMD20_RS09140	COG1136	(ABC) transporter
AMD20_RS09150	COG0477	Major facilitator Superfamily
AMD20_RS09155	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMD20_RS09170	COG1253	flavin adenine dinucleotide binding
AMD20_RS09180	COG0306	phosphate transporter
AMD20_RS09205	COG0504	CTP synthase activity
AMD20_RS09210	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AMD20_RS09220	COG0148	phosphopyruvate hydratase activity
AMD20_RS09225	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AMD20_RS09230	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
AMD20_RS09235	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AMD20_RS09240	COG0585	pseudouridine synthase activity
AMD20_RS09245	COG2840	Smr protein MutS2
AMD20_RS09250	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AMD20_RS09255	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMD20_RS09260	COG1238	metal cluster binding
AMD20_RS09275	COG1534	Rna-binding protein
AMD20_RS09280	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AMD20_RS09290	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AMD20_RS09295	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMD20_RS09305	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AMD20_RS09310	COG1546	Belongs to the CinA family
AMD20_RS09320	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMD20_RS09325	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMD20_RS09330	COG2137	regulation of response to DNA damage stimulus
AMD20_RS09335	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMD20_RS09340	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
AMD20_RS09355	COG1741	Belongs to the pirin family
AMD20_RS09365	COG0583	DNA-binding transcription factor activity
AMD20_RS09390	COG0351	phosphomethylpyrimidine kinase
AMD20_RS09390	COG0352	thiamine-phosphate diphosphorylase activity
AMD20_RS09405	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AMD20_RS09410	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMD20_RS09425	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMD20_RS09435	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AMD20_RS09440	COG3734	2-keto-3-deoxy-galactonokinase
AMD20_RS09450	COG4948	Mandelate Racemase Muconate Lactonizing
AMD20_RS09455	COG0800	Aldolase
AMD20_RS09495	COG1501	Belongs to the glycosyl hydrolase 31 family
AMD20_RS09505	COG1070	Carbohydrate kinase
AMD20_RS09510	COG2115	Belongs to the xylose isomerase family
AMD20_RS09515	COG0477	Major facilitator Superfamily
AMD20_RS09525	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMD20_RS09530	COG1469	GTP cyclohydrolase I activity
AMD20_RS09550	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AMD20_RS09555	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AMD20_RS09560	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
AMD20_RS09565	COG0166	Belongs to the GPI family
AMD20_RS09585	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD20_RS09595	COG5001	Diguanylate cyclase
AMD20_RS09595	COG4251	negative regulation of phosphorylation
AMD20_RS09595	COG3706	GGDEF domain
AMD20_RS09595	COG2203	Gaf domain
AMD20_RS09600	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD20_RS09605	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AMD20_RS09615	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AMD20_RS09620	COG0671	phosphoesterase, PA-phosphatase related
AMD20_RS09630	COG1794	racemase activity, acting on amino acids and derivatives
AMD20_RS09635	COG0697	spore germination
AMD20_RS09640	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMD20_RS09645	COG0167	dihydroorotate dehydrogenase activity
AMD20_RS09660	COG1012	belongs to the aldehyde dehydrogenase family
AMD20_RS09675	COG1215	transferase activity, transferring glycosyl groups
AMD20_RS09680	COG1649	PFAM Uncharacterised BCR, COG1649
AMD20_RS09680	COG0726	polysaccharide deacetylase
AMD20_RS09695	COG3210	domain, Protein
AMD20_RS09700	COG3210	domain, Protein
AMD20_RS09740	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD20_RS09745	COG0124	histidyl-tRNA synthetase
AMD20_RS09755	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AMD20_RS09760	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AMD20_RS09765	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMD20_RS09770	COG0131	Imidazoleglycerol-phosphate dehydratase
AMD20_RS09770	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMD20_RS09775	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AMD20_RS09780	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
AMD20_RS09785	COG0107	imidazoleglycerol-phosphate synthase activity
AMD20_RS09790	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMD20_RS09790	COG0140	phosphoribosyl-ATP diphosphatase activity
AMD20_RS09805	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
AMD20_RS09810	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
AMD20_RS09815	COG0235	Class ii aldolase
AMD20_RS09820	COG0531	amino acid
AMD20_RS09825	COG0531	amino acid
AMD20_RS09835	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMD20_RS09840	COG0277	FAD linked oxidase domain protein
AMD20_RS09860	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMD20_RS09905	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMD20_RS09910	COG2258	MOSC domain
AMD20_RS09915	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AMD20_RS09920	COG0505	Belongs to the CarA family
AMD20_RS09930	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AMD20_RS09935	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMD20_RS09945	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AMD20_RS09990	COG3279	Response regulator of the LytR AlgR family
AMD20_RS09995	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AMD20_RS10000	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AMD20_RS10010	COG0784	Response regulator, receiver
AMD20_RS10010	COG2198	Histidine kinase
AMD20_RS10010	COG2205	protein histidine kinase activity
AMD20_RS10015	COG1024	Enoyl-CoA hydratase
AMD20_RS10020	COG0318	PFAM AMP-dependent synthetase and ligase
AMD20_RS10050	COG2267	carboxylic ester hydrolase activity
AMD20_RS10060	COG2201	protein-glutamate methylesterase activity
AMD20_RS10065	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AMD20_RS10075	COG0840	transmembrane signaling receptor activity
AMD20_RS10080	COG0840	transmembrane signaling receptor activity
AMD20_RS10085	COG0840	transmembrane signaling receptor activity
AMD20_RS10095	COG0840	transmembrane signaling receptor activity
AMD20_RS10100	COG0840	transmembrane signaling receptor activity
AMD20_RS10125	COG0840	transmembrane signaling receptor activity
AMD20_RS10140	COG0840	transmembrane signaling receptor activity
AMD20_RS10145	COG0643	Histidine kinase
AMD20_RS10145	COG2198	Histidine kinase
AMD20_RS10150	COG0745	RESPONSE REGULATOR receiver
AMD20_RS10160	COG0835	chemotaxis
AMD20_RS10170	COG1360	Flagellar Motor Protein
AMD20_RS10175	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AMD20_RS10260	COG0641	radical SAM
AMD20_RS10275	COG0643	Histidine kinase
AMD20_RS10275	COG0784	Response regulator, receiver
AMD20_RS10275	COG2198	Histidine kinase
AMD20_RS10305	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMD20_RS10335	COG1684	flagellar biosynthetic protein fliR
AMD20_RS10350	COG3190	flagellar
AMD20_RS10400	COG1677	Flagellar hook-basal body complex protein FliE
AMD20_RS10430	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS10435	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS10440	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD20_RS10460	COG2201	protein-glutamate methylesterase activity
AMD20_RS10490	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AMD20_RS10495	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMD20_RS10500	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMD20_RS10510	COG1705	Flagellar rod assembly protein muramidase FlgJ
AMD20_RS10510	COG3951	Flagellar rod assembly protein muramidase FlgJ
AMD20_RS10515	COG1706	bacterial-type flagellum-dependent cell motility
AMD20_RS10520	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AMD20_RS10530	COG4787	bacterial-type flagellum-dependent cell motility
AMD20_RS10540	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AMD20_RS10545	COG1558	bacterial-type flagellum-dependent cell motility
AMD20_RS10555	COG0835	chemotaxis
AMD20_RS10555	COG0784	Response regulator, receiver
AMD20_RS10575	COG5002	protein histidine kinase activity
AMD20_RS10605	COG2915	High frequency lysogenization protein hflD homolog
AMD20_RS10610	COG0482	sulfurtransferase activity
AMD20_RS10625	COG0542	response to heat
AMD20_RS10635	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AMD20_RS10645	COG0492	ferredoxin-NADP+ reductase activity
AMD20_RS10650	COG1674	ftsk spoiiie
AMD20_RS10660	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AMD20_RS10670	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMD20_RS10675	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AMD20_RS10685	COG0183	Belongs to the thiolase family
AMD20_RS10690	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMD20_RS10690	COG1024	Enoyl-CoA hydratase
AMD20_RS10705	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AMD20_RS10715	COG1426	Protein conserved in bacteria
AMD20_RS10725	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD20_RS10730	COG1160	GTP binding
AMD20_RS10735	COG0303	'Molybdopterin
AMD20_RS10740	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMD20_RS10775	COG0708	Exodeoxyribonuclease III
AMD20_RS10785	COG0303	'Molybdopterin
AMD20_RS10790	COG0746	molybdenum cofactor guanylyltransferase activity
AMD20_RS10805	COG1914	H( )-stimulated, divalent metal cation uptake system
AMD20_RS10820	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AMD20_RS10825	COG0668	transmembrane transport
AMD20_RS10835	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AMD20_RS10850	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS10855	COG1183	phosphatidylcholine synthase activity
AMD20_RS10865	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMD20_RS10880	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD20_RS10880	COG0723	plastoquinol--plastocyanin reductase activity
AMD20_RS10890	COG2183	response to ionizing radiation
AMD20_RS10895	COG0784	Response regulator, receiver
AMD20_RS10895	COG2205	protein histidine kinase activity
AMD20_RS10960	COG0800	Aldolase
AMD20_RS10965	COG0129	dihydroxy-acid dehydratase activity
AMD20_RS10970	COG0363	glucosamine-6-phosphate deaminase activity
AMD20_RS10975	COG0837	glucose binding
AMD20_RS10980	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMD20_RS11000	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AMD20_RS11015	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AMD20_RS11020	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AMD20_RS11030	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMD20_RS11035	COG1136	(ABC) transporter
AMD20_RS11050	COG0811	peptide transport
AMD20_RS11060	COG1132	(ABC) transporter
AMD20_RS11065	COG1663	tetraacyldisaccharide 4'-kinase activity
AMD20_RS11070	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AMD20_RS11075	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMD20_RS11085	COG0322	excinuclease ABC activity
AMD20_RS11090	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMD20_RS11110	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMD20_RS11115	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMD20_RS11130	COG2801	Transposase and inactivated derivatives
AMD20_RS11145	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AMD20_RS11165	COG1054	Belongs to the UPF0176 family
AMD20_RS11175	COG1530	ribonuclease E activity
AMD20_RS11185	COG3064	Membrane
AMD20_RS11190	COG0428	transporter
AMD20_RS11200	COG2154	pterin-4-alpha-carbinolamine dehydratase
AMD20_RS11205	COG0316	Belongs to the HesB IscA family
AMD20_RS11205	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AMD20_RS11250	COG1073	alpha beta
AMD20_RS11250	COG2226	methyltransferase
AMD20_RS11260	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS11290	COG1238	metal cluster binding
AMD20_RS11325	COG3279	Response regulator of the LytR AlgR family
AMD20_RS11370	COG4566	intracellular signal transduction
AMD20_RS11380	COG5001	Diguanylate cyclase
AMD20_RS11395	COG3685	Protein conserved in bacteria
AMD20_RS11410	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AMD20_RS11410	COG1648	precorrin-2 dehydrogenase activity
AMD20_RS11425	COG2814	Major facilitator Superfamily
AMD20_RS11445	COG1335	isochorismatase
AMD20_RS11460	COG2197	response regulator
AMD20_RS11480	COG0583	DNA-binding transcription factor activity
AMD20_RS11485	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMD20_RS11490	COG3002	Belongs to the UPF0753 family
AMD20_RS11505	COG1396	sequence-specific DNA binding
AMD20_RS11510	COG5489	Protein of unknown function (DUF736)
AMD20_RS11515	COG2003	Belongs to the UPF0758 family
AMD20_RS11540	COG0582	viral genome integration into host DNA
AMD20_RS11555	COG4774	siderophore transport
AMD20_RS11570	COG2336	PFAM SpoVT AbrB
AMD20_RS11595	COG4206	TonB-dependent receptor
AMD20_RS11615	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
AMD20_RS11615	COG2273	Hydrolase Family 16
AMD20_RS11635	COG2274	protein secretion by the type I secretion system
AMD20_RS11690	COG0270	DNA (cytosine-5-)-methyltransferase activity
AMD20_RS11740	COG4804	nuclease activity
AMD20_RS11760	COG5006	permease, DMT superfamily
AMD20_RS11775	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMD20_RS11785	COG3938	Belongs to the proline racemase family
AMD20_RS11800	COG2807	transmembrane transport
AMD20_RS11805	COG2207	Transcriptional regulator
AMD20_RS11955	COG0210	DNA helicase
AMD20_RS12035	COG2084	Dehydrogenase
AMD20_RS12055	COG2003	Belongs to the UPF0758 family
AMD20_RS12090	COG0582	viral genome integration into host DNA
AMD20_RS12095	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMD20_RS12095	COG0519	Catalyzes the synthesis of GMP from XMP
AMD20_RS12105	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AMD20_RS12115	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMD20_RS12115	COG0475	glutathione-regulated potassium exporter activity
AMD20_RS12120	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMD20_RS12130	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMD20_RS12135	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AMD20_RS12145	COG0776	regulation of translation
AMD20_RS12150	COG0539	negative regulation of cytoplasmic translation
AMD20_RS12155	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AMD20_RS12170	COG2957	Belongs to the agmatine deiminase family
AMD20_RS12175	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMD20_RS12200	COG0395	ABC-type sugar transport system, permease component
AMD20_RS12205	COG1175	transmembrane transport
AMD20_RS12235	COG2350	Protein conserved in bacteria
AMD20_RS12240	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AMD20_RS12245	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AMD20_RS12250	COG1187	pseudouridine synthase activity
AMD20_RS12270	COG0436	Aminotransferase
AMD20_RS12275	COG4133	protoheme IX ABC transporter activity
AMD20_RS12295	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMD20_RS12300	COG1138	Cytochrome C-type biogenesis protein
AMD20_RS12320	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMD20_RS12325	COG1278	Cold shock
AMD20_RS12330	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AMD20_RS12335	COG4988	ABC transporter
AMD20_RS12345	COG1294	oxidase, subunit
AMD20_RS12370	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AMD20_RS12375	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AMD20_RS12385	COG0165	Argininosuccinate lyase
AMD20_RS12390	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AMD20_RS12400	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMD20_RS12405	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD20_RS12415	COG0137	argininosuccinate synthase activity
AMD20_RS12420	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMD20_RS12430	COG0215	cysteine-tRNA ligase activity
AMD20_RS12435	COG2166	iron-sulfur cluster assembly
AMD20_RS12455	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AMD20_RS12460	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AMD20_RS12485	COG4302	ethanolamine ammonia-lyase activity
AMD20_RS12515	COG2963	transposase activity
AMD20_RS12535	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMD20_RS12540	COG0402	S-adenosylhomocysteine deaminase activity
AMD20_RS12550	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMD20_RS12555	COG1509	lysine 2,3-aminomutase activity
AMD20_RS12560	COG5001	Diguanylate cyclase
AMD20_RS12560	COG3300	MHYT domain
AMD20_RS12575	COG0483	inositol monophosphate 1-phosphatase activity
AMD20_RS12580	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMD20_RS12595	COG0488	(ABC) transporter
AMD20_RS12600	COG0513	Belongs to the DEAD box helicase family
AMD20_RS12605	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AMD20_RS12610	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AMD20_RS12620	COG0625	glutathione transferase activity
AMD20_RS12630	COG4681	YaeQ
AMD20_RS12635	COG2081	HI0933 family
AMD20_RS12645	COG0501	Belongs to the peptidase M48B family
AMD20_RS12650	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMD20_RS12655	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS12675	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMD20_RS12680	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMD20_RS12685	COG0802	atpase or kinase
AMD20_RS12690	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMD20_RS12690	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AMD20_RS12695	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMD20_RS12700	COG1570	exodeoxyribonuclease VII activity
AMD20_RS12710	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AMD20_RS12890	COG0835	chemotaxis
AMD20_RS12895	COG0840	transmembrane signaling receptor activity
AMD20_RS12900	COG2094	Belongs to the DNA glycosylase MPG family
AMD20_RS12905	COG1201	RNA secondary structure unwinding
AMD20_RS12920	COG2969	positive regulation of protein catabolic process
AMD20_RS12925	COG0625	glutathione transferase activity
AMD20_RS12930	COG2857	Cytochrome c1
AMD20_RS12935	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMD20_RS12940	COG0723	plastoquinol--plastocyanin reductase activity
AMD20_RS12945	COG0741	lytic transglycosylase activity
AMD20_RS12960	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMD20_RS12965	COG1702	phosphate starvation-inducible protein PhoH
AMD20_RS12975	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AMD20_RS12985	COG4535	Mg2 and Co2 transporter CorC
AMD20_RS13000	COG1012	belongs to the aldehyde dehydrogenase family
AMD20_RS13010	COG1177	transmembrane transport
AMD20_RS13015	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMD20_RS13020	COG3842	ATPase activity
AMD20_RS13040	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AMD20_RS13055	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AMD20_RS13060	COG0174	glutamine synthetase
AMD20_RS13065	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD20_RS13075	COG2703	oxygen carrier activity
AMD20_RS13080	COG0477	Major facilitator Superfamily
AMD20_RS13090	COG0243	molybdopterin cofactor binding
AMD20_RS13095	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AMD20_RS13100	COG2223	nitrite transmembrane transporter activity
AMD20_RS13110	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMD20_RS13120	COG2733	membrane
AMD20_RS13125	COG5002	protein histidine kinase activity
AMD20_RS13125	COG0784	Response regulator, receiver
AMD20_RS13125	COG2205	protein histidine kinase activity
AMD20_RS13135	COG0477	Major facilitator Superfamily
AMD20_RS13140	COG2902	Dehydrogenase
AMD20_RS13150	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD20_RS13155	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD20_RS13160	COG1609	Transcriptional regulator
AMD20_RS13165	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD20_RS13165	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMD20_RS13170	COG1105	Belongs to the carbohydrate kinase PfkB family
AMD20_RS13175	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD20_RS13175	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD20_RS13210	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AMD20_RS13220	COG1862	Preprotein translocase
AMD20_RS13225	COG0343	queuine tRNA-ribosyltransferase activity
AMD20_RS13230	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AMD20_RS13270	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AMD20_RS13275	COG3291	Pkd domain containing protein
AMD20_RS13285	COG0405	Gamma-glutamyltransferase
AMD20_RS13290	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AMD20_RS13305	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AMD20_RS13310	COG0742	ribosomal rna small subunit methyltransferase
AMD20_RS13315	COG0326	Molecular chaperone. Has ATPase activity
AMD20_RS13385	COG0531	amino acid
AMD20_RS13400	COG0006	proline dipeptidase activity
AMD20_RS13410	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMD20_RS13425	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD20_RS13430	COG3938	Belongs to the proline racemase family
AMD20_RS13440	COG0552	protein localization to endoplasmic reticulum
AMD20_RS13445	COG1194	a g-specific adenine glycosylase
AMD20_RS13450	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
AMD20_RS13455	COG0784	Response regulator, receiver
AMD20_RS13455	COG4191	Histidine kinase
AMD20_RS13470	COG0322	excinuclease ABC activity
AMD20_RS13485	COG3040	lipid binding
AMD20_RS13495	COG1960	acyl-CoA dehydrogenase activity
AMD20_RS13505	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AMD20_RS13525	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMD20_RS13530	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD20_RS13535	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD20_RS13560	COG0438	transferase activity, transferring glycosyl groups
AMD20_RS13570	COG0438	transferase activity, transferring glycosyl groups
AMD20_RS13575	COG0438	transferase activity, transferring glycosyl groups
AMD20_RS13625	COG0072	phenylalanine-tRNA ligase activity
AMD20_RS13625	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD20_RS13630	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AMD20_RS13645	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMD20_RS13650	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AMD20_RS13675	COG1082	Xylose isomerase domain protein TIM barrel
AMD20_RS13690	COG0366	Alpha amylase catalytic
AMD20_RS13695	COG2963	transposase activity
AMD20_RS13760	COG2948	multi-organism process
AMD20_RS13780	COG3505	Type IV secretory pathway VirD4
AMD20_RS13795	COG0556	nucleotide-excision repair
AMD20_RS13865	COG4695	Portal protein
AMD20_RS13910	COG3179	chitinase
AMD20_RS14005	COG3275	phosphorelay sensor kinase activity
AMD20_RS14010	COG1611	Belongs to the LOG family
AMD20_RS14020	COG2095	MarC family integral membrane protein
AMD20_RS14030	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMD20_RS14065	COG1185	polyribonucleotide nucleotidyltransferase activity
AMD20_RS14070	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AMD20_RS14075	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMD20_RS14080	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AMD20_RS14085	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AMD20_RS14090	COG0195	Participates in both transcription termination and antitermination
AMD20_RS14095	COG0779	Required for maturation of 30S ribosomal subunits
AMD20_RS14105	COG1007	ATP synthesis coupled electron transport
AMD20_RS14130	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD20_RS14135	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AMD20_RS14145	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AMD20_RS14150	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AMD20_RS14155	COG0649	NAD binding
AMD20_RS14160	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD20_RS14165	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD20_RS14170	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD20_RS14185	COG0149	triose-phosphate isomerase activity
AMD20_RS14190	COG0300	oxidoreductase activity
AMD20_RS14225	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMD20_RS14230	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AMD20_RS14235	COG0159	tryptophan synthase activity
AMD20_RS14245	COG0133	tryptophan synthase activity
AMD20_RS14255	COG0135	phosphoribosylanthranilate isomerase activity
AMD20_RS14260	COG0101	tRNA pseudouridine synthase activity
AMD20_RS14280	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AMD20_RS14285	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMD20_RS14290	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AMD20_RS14295	COG2890	protein-(glutamine-N5) methyltransferase activity
AMD20_RS14305	COG0688	phosphatidylethanolamine metabolic process
AMD20_RS14315	COG0433	COG0433 Predicted ATPase
AMD20_RS14320	COG0494	nUDIX hydrolase
AMD20_RS14335	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMD20_RS14340	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMD20_RS14365	COG0717	Belongs to the dCTP deaminase family
AMD20_RS14370	COG0489	protein tyrosine kinase activity
AMD20_RS14390	COG3590	peptidase
AMD20_RS14395	COG3590	peptidase
AMD20_RS14415	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMD20_RS14420	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD20_RS14425	COG2311	Membrane
AMD20_RS14430	COG1047	Peptidyl-prolyl cis-trans
AMD20_RS14435	COG0791	NLP P60 protein
AMD20_RS14440	COG0791	NLP P60 protein
AMD20_RS14450	COG4106	trans-aconitate 2-methyltransferase activity
AMD20_RS14455	COG1301	dicarboxylic acid transport
AMD20_RS14460	COG1785	Belongs to the alkaline phosphatase family
AMD20_RS14465	COG0037	tRNA processing
AMD20_RS14470	COG1722	exodeoxyribonuclease VII activity
AMD20_RS14475	COG0142	geranyltranstransferase activity
AMD20_RS14480	COG4104	PAAR repeat-containing protein
AMD20_RS14490	COG0312	modulator of DNA gyrase
AMD20_RS14495	COG3028	Belongs to the UPF0307 family
AMD20_RS14500	COG0312	modulator of DNA gyrase
AMD20_RS14510	COG3164	Protein of unknown function
AMD20_RS14520	COG0424	maF-like protein
AMD20_RS14525	COG2968	Membrane
AMD20_RS14540	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AMD20_RS14555	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AMD20_RS14570	COG0495	leucyl-tRNA aminoacylation
AMD20_RS14580	COG3118	belongs to the thioredoxin family
AMD20_RS14605	COG2155	Conserved Protein
AMD20_RS14650	COG1132	(ABC) transporter
AMD20_RS14675	COG1538	Outer membrane efflux protein
AMD20_RS14680	COG0745	RESPONSE REGULATOR receiver
AMD20_RS14685	COG5000	phosphorelay sensor kinase activity
AMD20_RS14685	COG5002	protein histidine kinase activity
AMD20_RS14690	COG0475	glutathione-regulated potassium exporter activity
AMD20_RS14700	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMD20_RS14725	COG1187	pseudouridine synthase activity
AMD20_RS14730	COG5002	protein histidine kinase activity
AMD20_RS14730	COG5001	Diguanylate cyclase
AMD20_RS14845	COG0667	Aldo Keto reductase
AMD20_RS14850	COG2814	Major facilitator Superfamily
AMD20_RS14855	COG0583	DNA-binding transcription factor activity
AMD20_RS14865	COG2207	Transcriptional regulator
AMD20_RS14875	COG1309	transcriptional regulator
AMD20_RS14900	COG0735	belongs to the Fur family
AMD20_RS14905	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMD20_RS14930	COG4452	Inner membrane protein CreD
AMD20_RS14940	COG2205	protein histidine kinase activity
AMD20_RS14945	COG0745	RESPONSE REGULATOR receiver
AMD20_RS14950	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AMD20_RS14960	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMD20_RS14995	COG0643	Histidine kinase
AMD20_RS14995	COG2198	Histidine kinase
AMD20_RS15000	COG0840	transmembrane signaling receptor activity
AMD20_RS15005	COG0835	chemotaxis
AMD20_RS15010	COG2202	Pas domain
AMD20_RS15010	COG2200	EAL domain
AMD20_RS15010	COG2199	diguanylate cyclase activity
AMD20_RS15015	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMD20_RS15020	COG2201	protein-glutamate methylesterase activity
AMD20_RS15025	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD20_RS15030	COG3590	peptidase
AMD20_RS15040	COG0588	phosphoglycerate mutase activity
AMD20_RS15045	COG1515	deoxyribonuclease V activity
AMD20_RS15055	COG1741	Belongs to the pirin family
AMD20_RS15070	COG1741	Belongs to the pirin family
AMD20_RS15075	COG1966	Carbon starvation protein
AMD20_RS15080	COG2879	small protein
AMD20_RS15135	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMD20_RS15140	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AMD20_RS15145	COG2080	2 iron, 2 sulfur cluster binding
AMD20_RS15155	COG5001	Diguanylate cyclase
AMD20_RS15155	COG3706	GGDEF domain
AMD20_RS15155	COG2203	Gaf domain
AMD20_RS15155	COG4251	negative regulation of phosphorylation
AMD20_RS15160	COG0629	single-stranded DNA binding
AMD20_RS15165	COG0142	geranyltranstransferase activity
AMD20_RS15175	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AMD20_RS15190	COG0527	aspartate kinase activity
AMD20_RS15195	COG0384	phenazine biosynthesis protein PhzF
AMD20_RS15200	COG0384	phenazine biosynthesis protein PhzF
AMD20_RS15210	COG1764	response to oxidative stress
AMD20_RS15215	COG0540	Belongs to the ATCase OTCase family
AMD20_RS15220	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AMD20_RS15225	COG1678	Uncharacterized ACR, COG1678
AMD20_RS15235	COG0519	Catalyzes the synthesis of GMP from XMP
AMD20_RS15245	COG5297	Belongs to the glycosyl hydrolase family 6
AMD20_RS15260	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
AMD20_RS15275	COG0739	heme binding
AMD20_RS15295	COG0693	protein deglycase activity
AMD20_RS15305	COG1959	2 iron, 2 sulfur cluster binding
AMD20_RS15310	COG0719	Fe-S assembly protein
AMD20_RS15315	COG0396	ATPase activity
AMD20_RS15320	COG0719	Fe-S assembly protein
AMD20_RS15325	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AMD20_RS15335	COG2146	nitrite reductase [NAD(P)H] activity
AMD20_RS15340	COG4774	siderophore transport
AMD20_RS15345	COG3128	pkhd-type hydroxylase
AMD20_RS15370	COG1477	protein flavinylation
AMD20_RS15375	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMD20_RS15390	COG1555	photosystem II stabilization
AMD20_RS15395	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD20_RS15405	COG3178	'Phosphotransferase
AMD20_RS15410	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMD20_RS15420	COG0628	permease
AMD20_RS15430	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AMD20_RS15440	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMD20_RS15460	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AMD20_RS15465	COG0271	Belongs to the BolA IbaG family
AMD20_RS15475	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AMD20_RS15485	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AMD20_RS15490	COG1137	ATPase activity
AMD20_RS15505	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD20_RS15510	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AMD20_RS15515	COG1660	Displays ATPase and GTPase activities
AMD20_RS15525	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD20_RS15530	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMD20_RS15535	COG2239	Acts as a magnesium transporter
AMD20_RS15545	COG1294	oxidase, subunit
AMD20_RS15550	COG1271	oxidase subunit
AMD20_RS15560	COG1113	amino acid transport
AMD20_RS15580	COG2197	response regulator
AMD20_RS15585	COG0531	amino acid
AMD20_RS15605	COG1234	tRNA 3'-trailer cleavage
AMD20_RS15640	COG2814	Major facilitator Superfamily
AMD20_RS15650	COG0754	glutathionylspermidine amidase activity
AMD20_RS15675	COG1842	Phage shock protein A
AMD20_RS15685	COG0259	pyridoxamine-phosphate oxidase activity
AMD20_RS15690	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AMD20_RS15695	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AMD20_RS15705	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AMD20_RS15780	COG2814	Major facilitator Superfamily
AMD20_RS15800	COG2198	Histidine kinase
AMD20_RS15800	COG2205	protein histidine kinase activity
AMD20_RS15800	COG0784	Response regulator, receiver
AMD20_RS15805	COG2353	YceI-like domain
AMD20_RS15825	COG1760	l-serine dehydratase
AMD20_RS15835	COG0527	aspartate kinase activity
AMD20_RS15835	COG0460	homoserine dehydrogenase
AMD20_RS15840	COG0626	cystathionine gamma-synthase activity
AMD20_RS15845	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMD20_RS15850	COG0739	heme binding
AMD20_RS15855	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AMD20_RS15860	COG1272	protein, Hemolysin III
AMD20_RS15865	COG2982	Protein involved in outer membrane biogenesis
AMD20_RS15870	COG0516	GMP reductase activity
AMD20_RS15870	COG0517	IMP dehydrogenase activity
AMD20_RS15875	COG0463	Glycosyl transferase, family 2
AMD20_RS15880	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMD20_RS15885	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AMD20_RS15895	COG4771	TonB-dependent receptor
AMD20_RS15905	COG1309	transcriptional regulator
AMD20_RS15915	COG1960	acyl-CoA dehydrogenase activity
AMD20_RS15940	COG0509	glycine decarboxylation via glycine cleavage system
AMD20_RS15945	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMD20_RS15955	COG0330	HflC and HflK could
AMD20_RS15960	COG1742	UPF0060 membrane protein
AMD20_RS15965	COG3956	TIGRFAM MazG family protein
AMD20_RS15975	COG0494	nUDIX hydrolase
AMD20_RS15985	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMD20_RS15990	COG0837	glucose binding
AMD20_RS16005	COG1388	LysM domain
AMD20_RS16005	COG3858	chitin binding
AMD20_RS16010	COG3525	Glycosyl hydrolase, family 20, catalytic domain
AMD20_RS16020	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD20_RS16035	COG0531	amino acid
AMD20_RS16045	COG1486	melibiose metabolic process
AMD20_RS16055	COG3537	Alpha-1,2-mannosidase
AMD20_RS16090	COG3142	Participates in the control of copper homeostasis
AMD20_RS16095	COG1446	asparaginase
AMD20_RS16120	COG0784	Response regulator, receiver
AMD20_RS16120	COG2198	Histidine kinase
AMD20_RS16120	COG0643	Histidine kinase
AMD20_RS16125	COG0840	transmembrane signaling receptor activity
AMD20_RS16130	COG0835	chemotaxis
AMD20_RS16145	COG0189	ligase activity
AMD20_RS16155	COG1397	ADP-ribosylglycohydrolase
AMD20_RS16165	COG1199	ATP-dependent helicase activity
AMD20_RS16175	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMD20_RS16180	COG1215	transferase activity, transferring glycosyl groups
AMD20_RS16190	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMD20_RS16195	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AMD20_RS16200	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
AMD20_RS16205	COG0535	radical SAM domain protein
AMD20_RS16210	COG0535	radical SAM domain protein
AMD20_RS16225	COG0837	glucose binding
AMD20_RS16235	COG1643	Atp-dependent helicase
AMD20_RS16240	COG0783	Belongs to the Dps family
AMD20_RS16245	COG0514	ATP-dependent DNA helicase (RecQ)
AMD20_RS16280	COG0840	transmembrane signaling receptor activity
AMD20_RS16300	COG3920	Histidine kinase
AMD20_RS16305	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AMD20_RS16315	COG0602	queuosine metabolic process
AMD20_RS16325	COG2885	chlorophyll binding
AMD20_RS16330	COG0823	Involved in the tonB-independent uptake of proteins
AMD20_RS16340	COG0848	biopolymer transport protein
AMD20_RS16350	COG0824	Thioesterase
AMD20_RS16355	COG2255	four-way junction helicase activity
AMD20_RS16365	COG3158	transport of potassium into the cell
AMD20_RS16370	COG0632	four-way junction helicase activity
AMD20_RS16375	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AMD20_RS16380	COG0217	transcriptional regulatory protein
AMD20_RS16395	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AMD20_RS16410	COG0477	Major facilitator Superfamily
AMD20_RS16445	COG0488	(ABC) transporter
AMD20_RS16480	COG4651	solute:proton antiporter activity
AMD20_RS16480	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMD20_RS16505	COG4772	TonB-dependent receptor
AMD20_RS16515	COG4264	IucA IucC family
AMD20_RS16530	COG0019	diaminopimelate decarboxylase activity
AMD20_RS16555	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AMD20_RS16565	COG1492	cobalamin metabolic process
AMD20_RS16575	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AMD20_RS16595	COG4206	TonB-dependent receptor
AMD20_RS16600	COG0542	response to heat
AMD20_RS16605	COG1116	anion transmembrane transporter activity
AMD20_RS16610	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMD20_RS16615	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMD20_RS16620	COG0667	Aldo Keto reductase
AMD20_RS16625	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMD20_RS16630	COG4771	TonB-dependent receptor
AMD20_RS16635	COG2827	Endonuclease containing a URI domain
AMD20_RS16675	COG1877	trehalose-phosphatase activity
AMD20_RS16680	COG3387	PFAM Glycoside hydrolase 15-related
AMD20_RS16695	COG0840	transmembrane signaling receptor activity
AMD20_RS16700	COG3011	Protein conserved in bacteria
AMD20_RS16715	COG0564	pseudouridine synthase activity
AMD20_RS16720	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD20_RS16730	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AMD20_RS16730	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMD20_RS16760	COG2951	lytic endotransglycosylase activity
AMD20_RS16765	COG4644	lycopene metabolic process
AMD20_RS16785	COG2369	cell adhesion
AMD20_RS16810	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AMD20_RS16815	COG0045	succinate-CoA ligase (ADP-forming) activity
AMD20_RS16830	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD20_RS16860	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AMD20_RS16865	COG0237	dephospho-CoA kinase activity
AMD20_RS16885	COG2801	Transposase and inactivated derivatives
AMD20_RS16890	COG5002	protein histidine kinase activity
AMD20_RS16895	COG0745	RESPONSE REGULATOR receiver
AMD20_RS16905	COG0189	ligase activity
AMD20_RS16965	COG2003	Belongs to the UPF0758 family
AMD20_RS16990	COG4191	Histidine kinase
AMD20_RS16990	COG0784	Response regulator, receiver
AMD20_RS16995	COG4191	Histidine kinase
AMD20_RS16995	COG0784	Response regulator, receiver
AMD20_RS17105	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AMD20_RS17130	COG2022	thiamine diphosphate biosynthetic process
AMD20_RS17135	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AMD20_RS17140	COG3273	potassium ion transport
AMD20_RS17140	COG0471	metal ion transport
AMD20_RS17160	COG1970	mechanosensitive ion channel activity
AMD20_RS17185	COG3250	beta-galactosidase activity
AMD20_RS17190	COG4948	Mandelate Racemase Muconate Lactonizing
AMD20_RS17205	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMD20_RS17215	COG0308	aminopeptidase N
AMD20_RS17265	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD20_RS17275	COG2895	sulfate adenylyltransferase (ATP) activity
AMD20_RS17275	COG0529	Catalyzes the synthesis of activated sulfate
AMD20_RS17280	COG0175	sulfate reduction
AMD20_RS17285	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMD20_RS17290	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMD20_RS17295	COG0175	sulfate reduction
AMD20_RS17315	COG0784	Response regulator, receiver
AMD20_RS17315	COG2205	protein histidine kinase activity
AMD20_RS17315	COG2198	Histidine kinase
AMD20_RS17350	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
AMD20_RS17355	COG3588	fructose-bisphosphate aldolase
AMD20_RS17360	COG0469	pyruvate kinase activity
AMD20_RS17370	COG0126	phosphoglycerate kinase activity
AMD20_RS17390	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AMD20_RS17400	COG3047	cAMP biosynthetic process
AMD20_RS17405	COG3047	cAMP biosynthetic process
AMD20_RS17415	COG3453	Protein conserved in bacteria
AMD20_RS17415	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD20_RS17420	COG0725	ABC transporter, periplasmic molybdate-binding protein
AMD20_RS17425	COG4149	molybdate abc transporter
AMD20_RS17430	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AMD20_RS17465	COG1376	ErfK ybiS ycfS ynhG family protein
AMD20_RS17470	COG0739	heme binding
AMD20_RS17480	COG4773	Receptor
AMD20_RS17495	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AMD20_RS17500	COG1301	dicarboxylic acid transport
AMD20_RS17510	COG2304	oxidoreductase activity
AMD20_RS17530	COG0714	Associated with various cellular activities
AMD20_RS17560	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AMD20_RS17585	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMD20_RS17595	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMD20_RS17605	COG0194	GDP metabolic process
AMD20_RS17610	COG1561	YicC-like family, N-terminal region
AMD20_RS17615	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AMD20_RS17625	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AMD20_RS17630	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMD20_RS17645	COG0006	proline dipeptidase activity
AMD20_RS17655	COG0006	proline dipeptidase activity
AMD20_RS17660	COG3079	Belongs to the UPF0149 family
AMD20_RS17675	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMD20_RS17685	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AMD20_RS17695	COG2912	Transglutaminase-like superfamily
AMD20_RS17700	COG1773	rubredoxin
AMD20_RS17705	COG0352	thiamine-phosphate diphosphorylase activity
AMD20_RS17720	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AMD20_RS17735	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMD20_RS17765	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMD20_RS17770	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD20_RS17775	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS17785	COG0671	phosphoesterase, PA-phosphatase related
AMD20_RS17790	COG3781	membrane
AMD20_RS17800	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMD20_RS17805	COG0563	adenylate kinase activity
AMD20_RS17820	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
AMD20_RS17830	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMD20_RS17850	COG3710	Transcriptional regulator
AMD20_RS17855	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AMD20_RS17865	COG0840	transmembrane signaling receptor activity
AMD20_RS17870	COG0405	Gamma-glutamyltransferase
AMD20_RS17875	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AMD20_RS17895	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMD20_RS17900	COG0473	3-isopropylmalate dehydrogenase activity
AMD20_RS17905	COG0066	3-isopropylmalate dehydratase activity
AMD20_RS17910	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AMD20_RS17930	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMD20_RS17935	COG1538	Outer membrane efflux protein
AMD20_RS17940	COG1519	Transferase
AMD20_RS17945	COG1560	Kdo2-lipid A biosynthetic process
AMD20_RS17970	COG0280	phosphate acetyltransferase
AMD20_RS17970	COG0281	malic enzyme
AMD20_RS17975	COG1301	dicarboxylic acid transport
AMD20_RS18000	COG0583	DNA-binding transcription factor activity
AMD20_RS18005	COG0667	Aldo Keto reductase
AMD20_RS18020	COG2197	response regulator
AMD20_RS18030	COG0642	Histidine kinase
AMD20_RS18045	COG2851	Citrate transporter
AMD20_RS18050	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS18055	COG1609	Transcriptional regulator
AMD20_RS18060	COG2211	Major facilitator Superfamily
AMD20_RS18085	COG1162	GTPase activity
AMD20_RS18105	COG4773	Receptor
AMD20_RS18110	COG0726	polysaccharide deacetylase
AMD20_RS18115	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMD20_RS18130	COG2963	transposase activity
AMD20_RS18135	COG2801	Transposase and inactivated derivatives
AMD20_RS18150	COG1307	EDD domain protein, DegV family
AMD20_RS18155	COG0242	peptide deformylase activity
AMD20_RS18175	COG0457	Tetratricopeptide repeat
AMD20_RS18180	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AMD20_RS18185	COG1215	transferase activity, transferring glycosyl groups
AMD20_RS18190	COG1215	transferase activity, transferring glycosyl groups
AMD20_RS18205	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AMD20_RS18260	COG2188	Transcriptional regulator
AMD20_RS18270	COG1450	Type ii and iii secretion system protein
AMD20_RS18285	COG3166	PFAM Fimbrial assembly family protein
AMD20_RS18290	COG3156	type II secretion system protein K
AMD20_RS18295	COG4795	General secretion pathway protein
AMD20_RS18300	COG2165	general secretion pathway protein
AMD20_RS18305	COG4970	Tfp pilus assembly protein FimT
AMD20_RS18310	COG2165	general secretion pathway protein
AMD20_RS18315	COG1459	type II secretion system
AMD20_RS18320	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD20_RS18325	COG1404	Belongs to the peptidase S8 family
AMD20_RS18330	COG5295	Hep Hag repeat protein
AMD20_RS18335	COG1404	Belongs to the peptidase S8 family
AMD20_RS18340	COG5295	Hep Hag repeat protein
AMD20_RS18350	COG0047	phosphoribosylformylglycinamidine synthase activity
AMD20_RS18350	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMD20_RS18355	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMD20_RS18360	COG4974	Belongs to the 'phage' integrase family
AMD20_RS18375	COG0795	lipopolysaccharide-transporting ATPase activity
AMD20_RS18385	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMD20_RS18400	COG0525	valine-tRNA ligase activity
AMD20_RS18430	COG1183	phosphatidylcholine synthase activity
AMD20_RS18440	COG0442	prolyl-tRNA aminoacylation
AMD20_RS18455	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMD20_RS18460	COG1127	ABC transporter
AMD20_RS18465	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMD20_RS18465	COG3218	ABC-type transport auxiliary lipoprotein component
AMD20_RS18500	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMD20_RS18505	COG0662	Cupin 2, conserved barrel domain protein
AMD20_RS18505	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
AMD20_RS18535	COG2086	electron transfer activity
AMD20_RS18550	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMD20_RS18550	COG0546	phosphoglycolate phosphatase activity
AMD20_RS18555	COG0277	FAD linked oxidase domain protein
AMD20_RS18570	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMD20_RS18600	COG1216	Glycosyl transferase, family 2
AMD20_RS18600	COG0438	transferase activity, transferring glycosyl groups
AMD20_RS18620	COG0626	cystathionine gamma-synthase activity
AMD20_RS18655	COG0625	glutathione transferase activity
AMD20_RS18665	COG0513	Belongs to the DEAD box helicase family
AMD20_RS18680	COG4206	TonB-dependent receptor
AMD20_RS18685	COG0720	synthase
AMD20_RS18695	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AMD20_RS18705	COG1956	GAF domain-containing protein
AMD20_RS18715	COG2819	hydrolase of the alpha beta superfamily
AMD20_RS18730	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMD20_RS18735	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD20_RS18750	COG0339	signal peptide processing
AMD20_RS18800	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMD20_RS18805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD20_RS18810	COG1136	(ABC) transporter
AMD20_RS18810	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMD20_RS18815	COG0577	efflux transmembrane transporter activity
AMD20_RS18815	COG1136	(ABC) transporter
AMD20_RS18820	COG0577	efflux transmembrane transporter activity
AMD20_RS18835	COG4191	Histidine kinase
AMD20_RS18840	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AMD20_RS18855	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AMD20_RS18860	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AMD20_RS18865	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AMD20_RS18870	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AMD20_RS18875	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AMD20_RS18880	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AMD20_RS18890	COG0356	it plays a direct role in the translocation of protons across the membrane
AMD20_RS18910	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMD20_RS18920	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMD20_RS18965	COG2011	ABC-type metal ion transport system permease component
AMD20_RS18970	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AMD20_RS18975	COG0697	spore germination
AMD20_RS18980	COG1666	GTP binding
AMD20_RS18990	COG0784	Response regulator, receiver
AMD20_RS18990	COG2198	Histidine kinase
AMD20_RS18990	COG5002	protein histidine kinase activity
AMD20_RS19015	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMD20_RS19020	COG1187	pseudouridine synthase activity
AMD20_RS19025	COG2813	Specifically methylates the guanine in position
AMD20_RS19045	COG2205	protein histidine kinase activity
AMD20_RS19045	COG2202	Pas domain
AMD20_RS19065	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AMD20_RS19070	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD20_RS19125	COG0842	Transport permease protein
AMD20_RS19130	COG1131	(ABC) transporter
AMD20_RS19135	COG0025	NhaP-type Na H and K H
AMD20_RS19140	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
AMD20_RS19145	COG1573	uracil-dna glycosylase
AMD20_RS19155	COG3384	dioxygenase
AMD20_RS19165	COG0583	DNA-binding transcription factor activity
AMD20_RS19175	COG0667	Aldo Keto reductase
AMD20_RS19185	COG3590	peptidase
AMD20_RS19205	COG0531	amino acid
AMD20_RS19220	COG2972	Histidine kinase
AMD20_RS19235	COG3685	Protein conserved in bacteria
AMD20_RS19240	COG3546	catalase activity
AMD20_RS19285	COG1271	oxidase subunit
AMD20_RS19290	COG1294	oxidase, subunit
AMD20_RS19305	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS19310	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMD20_RS19330	COG1132	(ABC) transporter
AMD20_RS19345	COG1063	alcohol dehydrogenase
AMD20_RS19420	COG0251	oxidation-reduction process
AMD20_RS19450	COG0840	transmembrane signaling receptor activity
AMD20_RS19470	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AMD20_RS19510	COG0024	Methionine aminopeptidase
AMD20_RS19530	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMD20_RS19535	COG1490	D-aminoacyl-tRNA deacylase activity
AMD20_RS19540	COG1560	Kdo2-lipid A biosynthetic process
AMD20_RS19590	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMD20_RS19590	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMD20_RS19595	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AMD20_RS19600	COG0242	peptide deformylase activity
AMD20_RS19605	COG1652	LysM domain
AMD20_RS19610	COG0758	DNA mediated transformation
AMD20_RS19615	COG2922	Belongs to the Smg family
AMD20_RS19630	COG1754	DNA topoisomerase type I activity
AMD20_RS19630	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMD20_RS19635	COG0009	L-threonylcarbamoyladenylate synthase
AMD20_RS19650	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS19660	COG0616	signal peptide processing
AMD20_RS19665	COG0534	Mate efflux family protein
AMD20_RS19685	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AMD20_RS19690	COG0625	glutathione transferase activity
AMD20_RS19705	COG1252	NADH dehydrogenase
AMD20_RS19710	COG2860	membrane
AMD20_RS19715	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMD20_RS19720	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMD20_RS19725	COG2201	protein-glutamate methylesterase activity
AMD20_RS19730	COG2177	Part of the ABC transporter FtsEX involved in
AMD20_RS19735	COG2884	Cell division ATP-binding protein ftsE
AMD20_RS19740	COG0513	Belongs to the DEAD box helicase family
AMD20_RS19745	COG3118	belongs to the thioredoxin family
AMD20_RS19750	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMD20_RS19755	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
AMD20_RS19760	COG0583	DNA-binding transcription factor activity
AMD20_RS19805	COG1518	maintenance of DNA repeat elements
AMD20_RS19810	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
AMD20_RS19820	COG1652	LysM domain
AMD20_RS19825	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AMD20_RS19825	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AMD20_RS19830	COG1473	amidohydrolase
AMD20_RS19835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD20_RS19840	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD20_RS19850	COG5383	Protein conserved in bacteria
AMD20_RS19890	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
AMD20_RS19895	COG3023	N-Acetylmuramoyl-L-alanine amidase
AMD20_RS19905	COG4948	Mandelate Racemase Muconate Lactonizing
AMD20_RS19915	COG0531	amino acid
AMD20_RS19930	COG4682	membrane
AMD20_RS19935	COG2133	pyrroloquinoline quinone binding
AMD20_RS19945	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AMD20_RS19950	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AMD20_RS19960	COG1610	YqeY-like protein
AMD20_RS19965	COG1295	ribonuclease BN
AMD20_RS19970	COG0358	DNA primase activity
AMD20_RS19985	COG0109	protoheme IX farnesyltransferase activity
AMD20_RS20015	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AMD20_RS20025	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMD20_RS20070	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AMD20_RS20075	COG0739	heme binding
AMD20_RS20080	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AMD20_RS20090	COG2223	nitrite transmembrane transporter activity
AMD20_RS20095	COG0708	Exodeoxyribonuclease III
AMD20_RS20100	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AMD20_RS20110	COG1192	Involved in chromosome partitioning
AMD20_RS20115	COG1475	DNA binding
AMD20_RS20130	COG0463	Glycosyl transferase, family 2
AMD20_RS20150	COG0756	dUTP diphosphatase activity
AMD20_RS20155	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMD20_RS20160	COG2003	Belongs to the UPF0758 family
AMD20_RS20165	COG0018	arginyl-trna synthetase
AMD20_RS20180	COG4221	oxidoreductase activity
AMD20_RS20185	COG2755	lipolytic protein G-D-S-L family
AMD20_RS20185	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMD20_RS20195	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMD20_RS20205	COG1166	arginine decarboxylase activity
AMD20_RS20210	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AMD20_RS20250	COG0606	chelatase, subunit chli
AMD20_RS20265	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AMD20_RS20300	COG1690	Belongs to the RtcB family
AMD20_RS20340	COG1090	epimerase
AMD20_RS20350	COG0642	Histidine kinase
AMD20_RS20370	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMD20_RS20395	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMD20_RS20400	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMD20_RS20415	COG0753	catalase activity
AMD20_RS20430	COG2197	response regulator
AMD20_RS20435	COG4585	Histidine kinase
AMD20_RS20440	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD20_RS20445	COG1136	(ABC) transporter
AMD20_RS20470	COG0697	spore germination
AMD20_RS20485	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD20_RS20490	COG0180	Tryptophanyl-tRNA synthetase
AMD20_RS20495	COG3237	CsbD-like
AMD20_RS20535	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AMD20_RS20550	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AMD20_RS20595	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMD20_RS20615	COG1199	ATP-dependent helicase activity
AMD20_RS20630	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AMD20_RS20690	COG0625	glutathione transferase activity
AMD20_RS20730	COG4555	ABC transporter
AMD20_RS20740	COG1476	TRANSCRIPTIONal
AMD20_RS20785	COG0543	2 iron, 2 sulfur cluster binding
AMD20_RS20785	COG0633	Ferredoxin
AMD20_RS20790	COG1131	(ABC) transporter
AMD20_RS20795	COG0842	Transport permease protein
AMD20_RS20805	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMD20_RS20835	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMD20_RS20840	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMD20_RS20850	COG1042	CoA-binding domain protein
AMD20_RS20850	COG0045	succinate-CoA ligase (ADP-forming) activity
AMD20_RS20850	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AMD20_RS20855	COG2239	Acts as a magnesium transporter
AMD20_RS20860	COG3338	carbonate dehydratase activity
AMD20_RS20870	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMD20_RS20875	COG3387	PFAM Glycoside hydrolase 15-related
AMD20_RS20890	COG3100	YcgL domain-containing protein
AMD20_RS20895	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMD20_RS20905	COG0463	Glycosyl transferase, family 2
AMD20_RS20920	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS20960	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD20_RS20975	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMD20_RS21000	COG4946	Tricorn protease homolog
AMD20_RS21000	COG0823	Involved in the tonB-independent uptake of proteins
AMD20_RS21000	COG1506	peptidase
AMD20_RS21015	COG0408	coproporphyrinogen oxidase activity
AMD20_RS21050	COG2815	serine threonine protein kinase
AMD20_RS21050	COG0515	serine threonine protein kinase
AMD20_RS21055	COG0631	protein serine/threonine phosphatase activity
AMD20_RS21215	COG0210	DNA helicase
AMD20_RS21230	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD20_RS21235	COG0583	DNA-binding transcription factor activity
AMD20_RS21240	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMD20_RS21250	COG2159	amidohydrolase
AMD20_RS21270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD20_RS21290	COG0357	Ribosomal RNA small subunit methyltransferase G
AMD20_RS21295	COG3540	Alkaline phosphatase
AMD20_RS21305	COG2091	lysine biosynthetic process via aminoadipic acid
AMD20_RS21325	COG0708	Exodeoxyribonuclease III
AMD20_RS21330	COG1940	carbohydrate kinase activity
AMD20_RS21330	COG1846	Transcriptional regulator
AMD20_RS21340	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMD20_RS21350	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMD20_RS21355	COG3162	membrane
AMD20_RS21365	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMD20_RS21395	COG3507	Belongs to the glycosyl hydrolase 43 family
AMD20_RS21415	COG1028	Short-chain dehydrogenase reductase Sdr
AMD20_RS21420	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMD20_RS21425	COG4948	Mandelate Racemase Muconate Lactonizing
AMD20_RS21435	COG3254	rhamnose metabolic process
AMD20_RS21440	COG0738	Major facilitator superfamily
AMD20_RS21445	COG1414	Transcriptional regulator
AMD20_RS21450	COG1971	Probably functions as a manganese efflux pump
AMD20_RS21455	COG2205	protein histidine kinase activity
AMD20_RS21470	COG3459	Glycosyltransferase 36 associated
AMD20_RS21475	COG2211	Major facilitator Superfamily
AMD20_RS21480	COG3265	gluconokinase activity
AMD20_RS21485	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD20_RS21505	COG2911	Protein conserved in bacteria
AMD20_RS21510	COG0729	surface antigen
AMD20_RS21550	COG0752	glycyl-tRNA synthetase alpha subunit
AMD20_RS21555	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD20_RS21565	COG0519	Catalyzes the synthesis of GMP from XMP
AMD20_RS21565	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMD20_RS21575	COG0805	protein transport
AMD20_RS21580	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMD20_RS21585	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMD20_RS21595	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AMD20_RS21615	COG2974	May be involved in recombination
AMD20_RS21620	COG0037	tRNA processing
AMD20_RS21625	COG2115	Belongs to the xylose isomerase family
AMD20_RS21635	COG3661	Belongs to the glycosyl hydrolase 67 family
AMD20_RS21645	COG4948	Mandelate Racemase Muconate Lactonizing
AMD20_RS21655	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD20_RS21660	COG0246	Mannitol dehydrogenase
AMD20_RS21735	COG3386	PFAM SMP-30 Gluconolaconase
AMD20_RS21745	COG3250	beta-galactosidase activity
AMD20_RS21750	COG1904	glucuronate isomerase
AMD20_RS21755	COG3693	PFAM glycoside hydrolase, family 10
AMD20_RS21770	COG3693	PFAM glycoside hydrolase, family 10
AMD20_RS21785	COG2211	Major facilitator Superfamily
AMD20_RS21830	COG2937	Belongs to the GPAT DAPAT family
AMD20_RS21865	COG0284	orotidine-5'-phosphate decarboxylase activity
AMD20_RS21870	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
AMD20_RS21875	COG3132	Protein of unknown function, DUF480
AMD20_RS21890	COG0210	DNA helicase
AMD20_RS21895	COG1435	thymidine kinase activity
AMD20_RS21905	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
AMD20_RS21915	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AMD20_RS21950	COG3135	benzoate transporter
AMD20_RS21970	COG0676	glucose-6-phosphate 1-epimerase activity
AMD20_RS21980	COG3012	SEC-C Motif Domain Protein
AMD20_RS21985	COG0730	response to heat
AMD20_RS22005	COG0302	gtp cyclohydrolase
AMD20_RS22020	COG1566	PFAM secretion protein HlyD family protein
AMD20_RS22030	COG1289	transmembrane transporter activity
AMD20_RS22035	COG0477	Major facilitator Superfamily
AMD20_RS22045	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD20_RS22065	COG4691	Plasmid stability protein
AMD20_RS22070	COG1487	ribonuclease activity
AMD20_RS22095	COG0564	pseudouridine synthase activity
AMD20_RS22130	COG0439	Biotin carboxylase
AMD20_RS22170	COG1074	ATP-dependent DNA helicase activity
AMD20_RS22175	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AMD20_RS22190	COG1127	ABC transporter
AMD20_RS22195	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMD20_RS22200	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMD20_RS22215	COG2853	Lipoprotein
AMD20_RS22225	COG0386	Belongs to the glutathione peroxidase family
AMD20_RS22235	COG1322	Protein conserved in bacteria
AMD20_RS22240	COG0604	alcohol dehydrogenase
AMD20_RS22255	COG0625	glutathione transferase activity
AMD20_RS22265	COG0531	amino acid
AMD20_RS22270	COG3537	Alpha-1,2-mannosidase
AMD20_RS22280	COG3706	GGDEF domain
AMD20_RS22285	COG3835	regulator
AMD20_RS22290	COG1929	Belongs to the glycerate kinase type-1 family
AMD20_RS22295	COG2271	Major facilitator Superfamily
AMD20_RS22310	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMD20_RS22315	COG0861	Integral membrane protein TerC family
AMD20_RS22325	COG0584	glycerophosphoryl diester phosphodiesterase
AMD20_RS22340	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AMD20_RS22345	COG0726	polysaccharide deacetylase
AMD20_RS22355	COG0706	membrane insertase activity
AMD20_RS22360	COG0594	ribonuclease P activity