locus-tag	class	description
BJD09_RS00005	COG2198	Histidine kinase
BJD09_RS00005	COG0784	Response regulator, receiver
BJD09_RS00005	COG0643	Histidine kinase
BJD09_RS00040	COG1446	asparaginase
BJD09_RS00045	COG3142	Participates in the control of copper homeostasis
BJD09_RS00085	COG3537	Alpha-1,2-mannosidase
BJD09_RS00095	COG1486	melibiose metabolic process
BJD09_RS00105	COG0531	amino acid
BJD09_RS00120	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD09_RS00135	COG3858	chitin binding
BJD09_RS00135	COG1388	LysM domain
BJD09_RS00150	COG0837	glucose binding
BJD09_RS00155	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BJD09_RS00165	COG0494	nUDIX hydrolase
BJD09_RS00175	COG3956	TIGRFAM MazG family protein
BJD09_RS00180	COG1742	UPF0060 membrane protein
BJD09_RS00185	COG0330	HflC and HflK could
BJD09_RS00195	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BJD09_RS00200	COG0509	glycine decarboxylation via glycine cleavage system
BJD09_RS00225	COG1960	acyl-CoA dehydrogenase activity
BJD09_RS00235	COG1309	transcriptional regulator
BJD09_RS00245	COG4771	TonB-dependent receptor
BJD09_RS00255	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BJD09_RS00260	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD09_RS00265	COG0463	Glycosyl transferase, family 2
BJD09_RS00270	COG0516	GMP reductase activity
BJD09_RS00270	COG0517	IMP dehydrogenase activity
BJD09_RS00275	COG2982	Protein involved in outer membrane biogenesis
BJD09_RS00280	COG1272	protein, Hemolysin III
BJD09_RS00285	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BJD09_RS00290	COG0739	heme binding
BJD09_RS00295	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD09_RS00300	COG0626	cystathionine gamma-synthase activity
BJD09_RS00305	COG0527	aspartate kinase activity
BJD09_RS00305	COG0460	homoserine dehydrogenase
BJD09_RS00320	COG1760	l-serine dehydratase
BJD09_RS00340	COG2353	YceI-like domain
BJD09_RS00345	COG2205	protein histidine kinase activity
BJD09_RS00345	COG0784	Response regulator, receiver
BJD09_RS00345	COG2198	Histidine kinase
BJD09_RS00370	COG2814	Major facilitator Superfamily
BJD09_RS00445	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BJD09_RS00455	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BJD09_RS00460	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BJD09_RS00465	COG0259	pyridoxamine-phosphate oxidase activity
BJD09_RS00475	COG1842	Phage shock protein A
BJD09_RS00500	COG0754	glutathionylspermidine amidase activity
BJD09_RS00510	COG2814	Major facilitator Superfamily
BJD09_RS00555	COG1234	tRNA 3'-trailer cleavage
BJD09_RS00590	COG0531	amino acid
BJD09_RS00595	COG2197	response regulator
BJD09_RS00625	COG1113	amino acid transport
BJD09_RS00635	COG1271	oxidase subunit
BJD09_RS00640	COG1294	oxidase, subunit
BJD09_RS00655	COG2239	Acts as a magnesium transporter
BJD09_RS00660	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD09_RS00665	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD09_RS00675	COG1660	Displays ATPase and GTPase activities
BJD09_RS00680	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BJD09_RS00685	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD09_RS00700	COG1137	ATPase activity
BJD09_RS00705	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BJD09_RS00715	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BJD09_RS00725	COG0271	Belongs to the BolA IbaG family
BJD09_RS00730	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BJD09_RS00750	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BJD09_RS00760	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BJD09_RS00770	COG0628	permease
BJD09_RS00780	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BJD09_RS00785	COG3178	'Phosphotransferase
BJD09_RS00795	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD09_RS00800	COG1555	photosystem II stabilization
BJD09_RS00815	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD09_RS00820	COG1477	protein flavinylation
BJD09_RS00845	COG3128	pkhd-type hydroxylase
BJD09_RS00850	COG4774	siderophore transport
BJD09_RS00855	COG2146	nitrite reductase [NAD(P)H] activity
BJD09_RS00865	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BJD09_RS00870	COG0719	Fe-S assembly protein
BJD09_RS00875	COG0396	ATPase activity
BJD09_RS00880	COG0719	Fe-S assembly protein
BJD09_RS00885	COG1959	2 iron, 2 sulfur cluster binding
BJD09_RS00895	COG0693	protein deglycase activity
BJD09_RS00915	COG0739	heme binding
BJD09_RS00930	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BJD09_RS00945	COG5297	Belongs to the glycosyl hydrolase family 6
BJD09_RS00955	COG0519	Catalyzes the synthesis of GMP from XMP
BJD09_RS00965	COG1678	Uncharacterized ACR, COG1678
BJD09_RS00970	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BJD09_RS00975	COG0540	Belongs to the ATCase OTCase family
BJD09_RS00980	COG1764	response to oxidative stress
BJD09_RS00990	COG0384	phenazine biosynthesis protein PhzF
BJD09_RS00995	COG0384	phenazine biosynthesis protein PhzF
BJD09_RS01000	COG0527	aspartate kinase activity
BJD09_RS01015	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BJD09_RS01030	COG0142	geranyltranstransferase activity
BJD09_RS01035	COG0629	single-stranded DNA binding
BJD09_RS01040	COG5001	Diguanylate cyclase
BJD09_RS01040	COG2203	Gaf domain
BJD09_RS01040	COG4251	negative regulation of phosphorylation
BJD09_RS01040	COG3706	GGDEF domain
BJD09_RS01050	COG2080	2 iron, 2 sulfur cluster binding
BJD09_RS01055	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD09_RS01060	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD09_RS01105	COG2879	small protein
BJD09_RS01110	COG1966	Carbon starvation protein
BJD09_RS01115	COG1741	Belongs to the pirin family
BJD09_RS01130	COG1741	Belongs to the pirin family
BJD09_RS01140	COG1515	deoxyribonuclease V activity
BJD09_RS01145	COG0588	phosphoglycerate mutase activity
BJD09_RS01155	COG3590	peptidase
BJD09_RS01160	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_RS01165	COG2201	protein-glutamate methylesterase activity
BJD09_RS01170	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD09_RS01175	COG2199	diguanylate cyclase activity
BJD09_RS01175	COG2200	EAL domain
BJD09_RS01175	COG2202	Pas domain
BJD09_RS01180	COG0835	chemotaxis
BJD09_RS01185	COG0840	transmembrane signaling receptor activity
BJD09_RS01195	COG2198	Histidine kinase
BJD09_RS01195	COG0643	Histidine kinase
BJD09_RS01230	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BJD09_RS01240	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BJD09_RS01245	COG0745	RESPONSE REGULATOR receiver
BJD09_RS01250	COG2205	protein histidine kinase activity
BJD09_RS01260	COG4452	Inner membrane protein CreD
BJD09_RS01285	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD09_RS01290	COG0735	belongs to the Fur family
BJD09_RS01315	COG1309	transcriptional regulator
BJD09_RS01325	COG2207	Transcriptional regulator
BJD09_RS01335	COG0583	DNA-binding transcription factor activity
BJD09_RS01340	COG2814	Major facilitator Superfamily
BJD09_RS01350	COG0667	Aldo Keto reductase
BJD09_RS01470	COG5002	protein histidine kinase activity
BJD09_RS01470	COG5001	Diguanylate cyclase
BJD09_RS01475	COG1187	pseudouridine synthase activity
BJD09_RS01500	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD09_RS01510	COG0475	glutathione-regulated potassium exporter activity
BJD09_RS01515	COG5000	phosphorelay sensor kinase activity
BJD09_RS01515	COG5002	protein histidine kinase activity
BJD09_RS01520	COG0745	RESPONSE REGULATOR receiver
BJD09_RS01525	COG1538	Outer membrane efflux protein
BJD09_RS01555	COG1132	(ABC) transporter
BJD09_RS01600	COG2155	Conserved Protein
BJD09_RS01630	COG3118	belongs to the thioredoxin family
BJD09_RS01640	COG0495	leucyl-tRNA aminoacylation
BJD09_RS01655	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BJD09_RS01670	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BJD09_RS01685	COG2968	Membrane
BJD09_RS01690	COG0424	maF-like protein
BJD09_RS01700	COG3164	Protein of unknown function
BJD09_RS01710	COG0312	modulator of DNA gyrase
BJD09_RS01715	COG3028	Belongs to the UPF0307 family
BJD09_RS01720	COG0312	modulator of DNA gyrase
BJD09_RS01730	COG4104	PAAR repeat-containing protein
BJD09_RS01735	COG0142	geranyltranstransferase activity
BJD09_RS01740	COG1722	exodeoxyribonuclease VII activity
BJD09_RS01745	COG0037	tRNA processing
BJD09_RS01755	COG1785	Belongs to the alkaline phosphatase family
BJD09_RS01765	COG4106	trans-aconitate 2-methyltransferase activity
BJD09_RS01775	COG0791	NLP P60 protein
BJD09_RS01780	COG0791	NLP P60 protein
BJD09_RS01785	COG1047	Peptidyl-prolyl cis-trans
BJD09_RS01790	COG2311	Membrane
BJD09_RS01795	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_RS01800	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD09_RS01820	COG3590	peptidase
BJD09_RS01830	COG3590	peptidase
BJD09_RS01850	COG0489	protein tyrosine kinase activity
BJD09_RS01860	COG0717	Belongs to the dCTP deaminase family
BJD09_RS01885	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD09_RS01890	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD09_RS01910	COG0494	nUDIX hydrolase
BJD09_RS01915	COG0433	COG0433 Predicted ATPase
BJD09_RS01930	COG0688	phosphatidylethanolamine metabolic process
BJD09_RS01940	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD09_RS01945	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BJD09_RS01950	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD09_RS01955	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD09_RS01975	COG0101	tRNA pseudouridine synthase activity
BJD09_RS01980	COG0135	phosphoribosylanthranilate isomerase activity
BJD09_RS01990	COG0133	tryptophan synthase activity
BJD09_RS02000	COG0159	tryptophan synthase activity
BJD09_RS02005	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BJD09_RS02010	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD09_RS02040	COG0300	oxidoreductase activity
BJD09_RS02045	COG0149	triose-phosphate isomerase activity
BJD09_RS02060	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD09_RS02065	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD09_RS02070	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD09_RS02075	COG0649	NAD binding
BJD09_RS02080	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BJD09_RS02085	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BJD09_RS02095	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BJD09_RS02100	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD09_RS02125	COG1007	ATP synthesis coupled electron transport
BJD09_RS02135	COG0779	Required for maturation of 30S ribosomal subunits
BJD09_RS02140	COG0195	Participates in both transcription termination and antitermination
BJD09_RS02145	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BJD09_RS02150	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BJD09_RS02155	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BJD09_RS02160	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BJD09_RS02165	COG1185	polyribonucleotide nucleotidyltransferase activity
BJD09_RS02200	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD09_RS02210	COG2095	MarC family integral membrane protein
BJD09_RS02225	COG1611	Belongs to the LOG family
BJD09_RS02230	COG3275	phosphorelay sensor kinase activity
BJD09_RS02330	COG3179	chitinase
BJD09_RS02375	COG4695	Portal protein
BJD09_RS02490	COG0556	nucleotide-excision repair
BJD09_RS02505	COG3505	Type IV secretory pathway VirD4
BJD09_RS02525	COG2948	multi-organism process
BJD09_RS02545	COG3702	type iv secretory pathway
BJD09_RS02610	COG0366	Alpha amylase catalytic
BJD09_RS02640	COG1082	Xylose isomerase domain protein TIM barrel
BJD09_RS02665	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BJD09_RS02670	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BJD09_RS02685	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BJD09_RS02690	COG0072	phenylalanine-tRNA ligase activity
BJD09_RS02690	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD09_RS02740	COG0438	transferase activity, transferring glycosyl groups
BJD09_RS02745	COG0438	transferase activity, transferring glycosyl groups
BJD09_RS02755	COG0438	transferase activity, transferring glycosyl groups
BJD09_RS02780	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD09_RS02785	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD09_RS02790	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD09_RS02810	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BJD09_RS02820	COG1960	acyl-CoA dehydrogenase activity
BJD09_RS02835	COG3040	lipid binding
BJD09_RS02850	COG0322	excinuclease ABC activity
BJD09_RS02865	COG0784	Response regulator, receiver
BJD09_RS02865	COG4191	Histidine kinase
BJD09_RS02870	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BJD09_RS02875	COG1194	a g-specific adenine glycosylase
BJD09_RS02885	COG0552	protein localization to endoplasmic reticulum
BJD09_RS02895	COG3938	Belongs to the proline racemase family
BJD09_RS02900	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_RS02915	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD09_RS02925	COG0006	proline dipeptidase activity
BJD09_RS02940	COG0531	amino acid
BJD09_RS03020	COG0326	Molecular chaperone. Has ATPase activity
BJD09_RS03025	COG0742	ribosomal rna small subunit methyltransferase
BJD09_RS03030	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BJD09_RS03045	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BJD09_RS03050	COG0405	Gamma-glutamyltransferase
BJD09_RS03055	COG3291	Pkd domain containing protein
BJD09_RS03060	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BJD09_RS03095	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BJD09_RS03100	COG0343	queuine tRNA-ribosyltransferase activity
BJD09_RS03105	COG1862	Preprotein translocase
BJD09_RS03115	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD09_RS03160	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD09_RS03160	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD09_RS03165	COG1105	Belongs to the carbohydrate kinase PfkB family
BJD09_RS03170	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD09_RS03170	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD09_RS03175	COG1609	Transcriptional regulator
BJD09_RS03180	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_RS03185	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_RS03195	COG2902	Dehydrogenase
BJD09_RS03205	COG0477	Major facilitator Superfamily
BJD09_RS03215	COG5002	protein histidine kinase activity
BJD09_RS03215	COG2205	protein histidine kinase activity
BJD09_RS03215	COG0784	Response regulator, receiver
BJD09_RS03220	COG2733	membrane
BJD09_RS03230	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BJD09_RS03245	COG2223	nitrite transmembrane transporter activity
BJD09_RS03250	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BJD09_RS03255	COG0243	molybdopterin cofactor binding
BJD09_RS03265	COG0477	Major facilitator Superfamily
BJD09_RS03270	COG2703	oxygen carrier activity
BJD09_RS03280	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_RS03285	COG0174	glutamine synthetase
BJD09_RS03290	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BJD09_RS03305	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD09_RS03325	COG3842	ATPase activity
BJD09_RS03330	COG1176	ABC-type spermidine putrescine transport system, permease component I
BJD09_RS03335	COG1177	transmembrane transport
BJD09_RS03340	COG1012	belongs to the aldehyde dehydrogenase family
BJD09_RS03355	COG4535	Mg2 and Co2 transporter CorC
BJD09_RS03365	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BJD09_RS03375	COG1702	phosphate starvation-inducible protein PhoH
BJD09_RS03380	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD09_RS03395	COG0741	lytic transglycosylase activity
BJD09_RS03405	COG0723	plastoquinol--plastocyanin reductase activity
BJD09_RS03410	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BJD09_RS03415	COG2857	Cytochrome c1
BJD09_RS03420	COG0625	glutathione transferase activity
BJD09_RS03425	COG2969	positive regulation of protein catabolic process
BJD09_RS03445	COG1201	RNA secondary structure unwinding
BJD09_RS03450	COG2094	Belongs to the DNA glycosylase MPG family
BJD09_RS03455	COG0840	transmembrane signaling receptor activity
BJD09_RS03460	COG0835	chemotaxis
BJD09_RS03645	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD09_RS03655	COG1570	exodeoxyribonuclease VII activity
BJD09_RS03660	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD09_RS03665	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BJD09_RS03665	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD09_RS03670	COG0802	atpase or kinase
BJD09_RS03675	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD09_RS03680	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BJD09_RS03705	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS03710	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD09_RS03715	COG0501	Belongs to the peptidase M48B family
BJD09_RS03725	COG2081	HI0933 family
BJD09_RS03730	COG4681	YaeQ
BJD09_RS03740	COG0625	glutathione transferase activity
BJD09_RS03750	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BJD09_RS03755	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BJD09_RS03760	COG0513	Belongs to the DEAD box helicase family
BJD09_RS03765	COG0488	(ABC) transporter
BJD09_RS03785	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BJD09_RS03790	COG0483	inositol monophosphate 1-phosphatase activity
BJD09_RS03805	COG5001	Diguanylate cyclase
BJD09_RS03805	COG3300	MHYT domain
BJD09_RS03810	COG1509	lysine 2,3-aminomutase activity
BJD09_RS03815	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD09_RS03825	COG0402	S-adenosylhomocysteine deaminase activity
BJD09_RS03830	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BJD09_RS03860	COG2963	transposase activity
BJD09_RS03895	COG4302	ethanolamine ammonia-lyase activity
BJD09_RS03925	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BJD09_RS03930	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BJD09_RS03945	COG2166	iron-sulfur cluster assembly
BJD09_RS03950	COG0215	cysteine-tRNA ligase activity
BJD09_RS03960	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BJD09_RS03965	COG0137	argininosuccinate synthase activity
BJD09_RS03975	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD09_RS03980	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BJD09_RS03990	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BJD09_RS03995	COG0165	Argininosuccinate lyase
BJD09_RS04010	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BJD09_RS04040	COG1294	oxidase, subunit
BJD09_RS04050	COG4988	ABC transporter
BJD09_RS04055	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BJD09_RS04060	COG1278	Cold shock
BJD09_RS04065	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD09_RS04085	COG1138	Cytochrome C-type biogenesis protein
BJD09_RS04090	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD09_RS04110	COG4133	protoheme IX ABC transporter activity
BJD09_RS04115	COG0436	Aminotransferase
BJD09_RS04135	COG1187	pseudouridine synthase activity
BJD09_RS04140	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BJD09_RS04145	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BJD09_RS04150	COG2350	Protein conserved in bacteria
BJD09_RS04180	COG1175	transmembrane transport
BJD09_RS04185	COG0395	ABC-type sugar transport system, permease component
BJD09_RS04210	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD09_RS04215	COG2957	Belongs to the agmatine deiminase family
BJD09_RS04235	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BJD09_RS04240	COG0539	negative regulation of cytoplasmic translation
BJD09_RS04245	COG0776	regulation of translation
BJD09_RS04255	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BJD09_RS04260	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD09_RS04270	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BJD09_RS04275	COG0475	glutathione-regulated potassium exporter activity
BJD09_RS04275	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD09_RS04285	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BJD09_RS04295	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD09_RS04295	COG0519	Catalyzes the synthesis of GMP from XMP
BJD09_RS04300	COG0582	viral genome integration into host DNA
BJD09_RS04335	COG2003	Belongs to the UPF0758 family
BJD09_RS04355	COG2084	Dehydrogenase
BJD09_RS04435	COG0210	DNA helicase
BJD09_RS04585	COG2207	Transcriptional regulator
BJD09_RS04590	COG2807	transmembrane transport
BJD09_RS04605	COG3938	Belongs to the proline racemase family
BJD09_RS04615	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD09_RS04630	COG5006	permease, DMT superfamily
BJD09_RS04645	COG4804	nuclease activity
BJD09_RS04695	COG0270	DNA (cytosine-5-)-methyltransferase activity
BJD09_RS04750	COG2274	protein secretion by the type I secretion system
BJD09_RS04770	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
BJD09_RS04770	COG2273	Hydrolase Family 16
BJD09_RS04790	COG4206	TonB-dependent receptor
BJD09_RS04815	COG2336	PFAM SpoVT AbrB
BJD09_RS04835	COG4774	siderophore transport
BJD09_RS04850	COG0582	viral genome integration into host DNA
BJD09_RS04875	COG2003	Belongs to the UPF0758 family
BJD09_RS04880	COG5489	Protein of unknown function (DUF736)
BJD09_RS04885	COG1396	sequence-specific DNA binding
BJD09_RS04900	COG3002	Belongs to the UPF0753 family
BJD09_RS04905	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD09_RS04910	COG0583	DNA-binding transcription factor activity
BJD09_RS04925	COG2197	response regulator
BJD09_RS04940	COG1335	isochorismatase
BJD09_RS04955	COG2814	Major facilitator Superfamily
BJD09_RS04970	COG1648	precorrin-2 dehydrogenase activity
BJD09_RS04970	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD09_RS04995	COG3685	Protein conserved in bacteria
BJD09_RS05015	COG5001	Diguanylate cyclase
BJD09_RS05025	COG4566	intracellular signal transduction
BJD09_RS05075	COG3279	Response regulator of the LytR AlgR family
BJD09_RS05110	COG1238	metal cluster binding
BJD09_RS05195	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS05250	COG0316	Belongs to the HesB IscA family
BJD09_RS05250	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BJD09_RS05255	COG2154	pterin-4-alpha-carbinolamine dehydratase
BJD09_RS05265	COG0428	transporter
BJD09_RS05270	COG3064	Membrane
BJD09_RS05280	COG1530	ribonuclease E activity
BJD09_RS05290	COG1054	Belongs to the UPF0176 family
BJD09_RS05310	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BJD09_RS05320	COG0582	viral genome integration into host DNA
BJD09_RS05360	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BJD09_RS05365	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BJD09_RS05385	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD09_RS05390	COG0322	excinuclease ABC activity
BJD09_RS05400	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD09_RS05405	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BJD09_RS05410	COG1663	tetraacyldisaccharide 4'-kinase activity
BJD09_RS05415	COG1132	(ABC) transporter
BJD09_RS05425	COG0811	peptide transport
BJD09_RS05440	COG1136	(ABC) transporter
BJD09_RS05445	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD09_RS05455	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BJD09_RS05460	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BJD09_RS05475	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BJD09_RS05500	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD09_RS05505	COG0837	glucose binding
BJD09_RS05510	COG0363	glucosamine-6-phosphate deaminase activity
BJD09_RS05515	COG0129	dihydroxy-acid dehydratase activity
BJD09_RS05520	COG0800	Aldolase
BJD09_RS05600	COG2205	protein histidine kinase activity
BJD09_RS05600	COG0784	Response regulator, receiver
BJD09_RS05605	COG2183	response to ionizing radiation
BJD09_RS05615	COG0723	plastoquinol--plastocyanin reductase activity
BJD09_RS05615	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_RS05630	COG3243	poly(R)-hydroxyalkanoic acid synthase
BJD09_RS05640	COG1183	phosphatidylcholine synthase activity
BJD09_RS05645	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS05660	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BJD09_RS05670	COG0668	transmembrane transport
BJD09_RS05675	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BJD09_RS05690	COG1914	H( )-stimulated, divalent metal cation uptake system
BJD09_RS05705	COG0746	molybdenum cofactor guanylyltransferase activity
BJD09_RS05710	COG0303	'Molybdopterin
BJD09_RS05720	COG0708	Exodeoxyribonuclease III
BJD09_RS05760	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD09_RS05765	COG0303	'Molybdopterin
BJD09_RS05770	COG1160	GTP binding
BJD09_RS05775	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD09_RS05785	COG1426	Protein conserved in bacteria
BJD09_RS05795	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BJD09_RS05810	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD09_RS05810	COG1024	Enoyl-CoA hydratase
BJD09_RS05815	COG0183	Belongs to the thiolase family
BJD09_RS05825	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BJD09_RS05830	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BJD09_RS05840	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BJD09_RS05850	COG1674	ftsk spoiiie
BJD09_RS05855	COG0492	ferredoxin-NADP+ reductase activity
BJD09_RS05865	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BJD09_RS05875	COG0542	response to heat
BJD09_RS05890	COG0482	sulfurtransferase activity
BJD09_RS05895	COG2915	High frequency lysogenization protein hflD homolog
BJD09_RS05925	COG5002	protein histidine kinase activity
BJD09_RS05945	COG0784	Response regulator, receiver
BJD09_RS05945	COG0835	chemotaxis
BJD09_RS05955	COG1558	bacterial-type flagellum-dependent cell motility
BJD09_RS05960	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BJD09_RS05970	COG4787	bacterial-type flagellum-dependent cell motility
BJD09_RS05985	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
BJD09_RS05990	COG1706	bacterial-type flagellum-dependent cell motility
BJD09_RS05995	COG3951	Flagellar rod assembly protein muramidase FlgJ
BJD09_RS05995	COG1705	Flagellar rod assembly protein muramidase FlgJ
BJD09_RS06005	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD09_RS06010	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD09_RS06015	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BJD09_RS06045	COG2201	protein-glutamate methylesterase activity
BJD09_RS06065	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD09_RS06070	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS06075	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS06105	COG1677	Flagellar hook-basal body complex protein FliE
BJD09_RS06155	COG3190	flagellar
BJD09_RS06175	COG1684	flagellar biosynthetic protein fliR
BJD09_RS06205	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BJD09_RS06235	COG2198	Histidine kinase
BJD09_RS06235	COG0643	Histidine kinase
BJD09_RS06235	COG0784	Response regulator, receiver
BJD09_RS06255	COG0641	radical SAM
BJD09_RS06295	COG3002	Belongs to the UPF0753 family
BJD09_RS06370	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BJD09_RS06375	COG1360	Flagellar Motor Protein
BJD09_RS06385	COG0835	chemotaxis
BJD09_RS06395	COG0745	RESPONSE REGULATOR receiver
BJD09_RS06400	COG2198	Histidine kinase
BJD09_RS06400	COG0643	Histidine kinase
BJD09_RS06420	COG0840	transmembrane signaling receptor activity
BJD09_RS06435	COG0840	transmembrane signaling receptor activity
BJD09_RS06440	COG0840	transmembrane signaling receptor activity
BJD09_RS06445	COG0840	transmembrane signaling receptor activity
BJD09_RS06450	COG0840	transmembrane signaling receptor activity
BJD09_RS06460	COG0840	transmembrane signaling receptor activity
BJD09_RS06475	COG0840	transmembrane signaling receptor activity
BJD09_RS06480	COG0840	transmembrane signaling receptor activity
BJD09_RS06505	COG0840	transmembrane signaling receptor activity
BJD09_RS06515	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BJD09_RS06520	COG2201	protein-glutamate methylesterase activity
BJD09_RS06530	COG2267	carboxylic ester hydrolase activity
BJD09_RS06560	COG0318	PFAM AMP-dependent synthetase and ligase
BJD09_RS06565	COG1024	Enoyl-CoA hydratase
BJD09_RS06570	COG2198	Histidine kinase
BJD09_RS06570	COG2205	protein histidine kinase activity
BJD09_RS06570	COG0784	Response regulator, receiver
BJD09_RS06580	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BJD09_RS06585	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BJD09_RS06590	COG3279	Response regulator of the LytR AlgR family
BJD09_RS06630	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BJD09_RS06640	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD09_RS06645	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BJD09_RS06655	COG0505	Belongs to the CarA family
BJD09_RS06660	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BJD09_RS06665	COG2258	MOSC domain
BJD09_RS06670	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD09_RS06715	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD09_RS06735	COG0277	FAD linked oxidase domain protein
BJD09_RS06740	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD09_RS06750	COG0531	amino acid
BJD09_RS06755	COG0531	amino acid
BJD09_RS06760	COG0235	Class ii aldolase
BJD09_RS06765	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
BJD09_RS06770	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
BJD09_RS06785	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BJD09_RS06785	COG0140	phosphoribosyl-ATP diphosphatase activity
BJD09_RS06790	COG0107	imidazoleglycerol-phosphate synthase activity
BJD09_RS06795	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BJD09_RS06800	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BJD09_RS06805	COG0131	Imidazoleglycerol-phosphate dehydratase
BJD09_RS06805	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BJD09_RS06810	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD09_RS06815	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BJD09_RS06820	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BJD09_RS06830	COG0124	histidyl-tRNA synthetase
BJD09_RS06835	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD09_RS06885	COG3210	domain, Protein
BJD09_RS06895	COG3210	domain, Protein
BJD09_RS06910	COG0726	polysaccharide deacetylase
BJD09_RS06910	COG1649	PFAM Uncharacterised BCR, COG1649
BJD09_RS06915	COG1215	transferase activity, transferring glycosyl groups
BJD09_RS06930	COG1012	belongs to the aldehyde dehydrogenase family
BJD09_RS06950	COG0167	dihydroorotate dehydrogenase activity
BJD09_RS06955	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BJD09_RS06960	COG0697	spore germination
BJD09_RS06965	COG1794	racemase activity, acting on amino acids and derivatives
BJD09_RS06980	COG0671	phosphoesterase, PA-phosphatase related
BJD09_RS06985	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BJD09_RS07000	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BJD09_RS07005	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD09_RS07015	COG2203	Gaf domain
BJD09_RS07015	COG5001	Diguanylate cyclase
BJD09_RS07015	COG3706	GGDEF domain
BJD09_RS07015	COG4251	negative regulation of phosphorylation
BJD09_RS07030	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD09_RS07055	COG0166	Belongs to the GPI family
BJD09_RS07060	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BJD09_RS07065	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BJD09_RS07070	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BJD09_RS07090	COG1469	GTP cyclohydrolase I activity
BJD09_RS07095	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD09_RS07115	COG0477	Major facilitator Superfamily
BJD09_RS07120	COG2115	Belongs to the xylose isomerase family
BJD09_RS07125	COG1070	Carbohydrate kinase
BJD09_RS07135	COG1501	Belongs to the glycosyl hydrolase 31 family
BJD09_RS07175	COG0800	Aldolase
BJD09_RS07180	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_RS07190	COG3734	2-keto-3-deoxy-galactonokinase
BJD09_RS07195	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BJD09_RS07205	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD09_RS07220	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BJD09_RS07225	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BJD09_RS07240	COG0352	thiamine-phosphate diphosphorylase activity
BJD09_RS07240	COG0351	phosphomethylpyrimidine kinase
BJD09_RS07265	COG0583	DNA-binding transcription factor activity
BJD09_RS07270	COG1741	Belongs to the pirin family
BJD09_RS07290	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BJD09_RS07295	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD09_RS07300	COG2137	regulation of response to DNA damage stimulus
BJD09_RS07310	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BJD09_RS07315	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD09_RS07325	COG1546	Belongs to the CinA family
BJD09_RS07330	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BJD09_RS07340	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BJD09_RS07345	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BJD09_RS07355	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BJD09_RS07360	COG1534	Rna-binding protein
BJD09_RS07375	COG1238	metal cluster binding
BJD09_RS07380	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD09_RS07385	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BJD09_RS07390	COG2840	Smr protein MutS2
BJD09_RS07395	COG0585	pseudouridine synthase activity
BJD09_RS07400	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BJD09_RS07405	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BJD09_RS07410	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BJD09_RS07415	COG0148	phosphopyruvate hydratase activity
BJD09_RS07425	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BJD09_RS07430	COG0504	CTP synthase activity
BJD09_RS07455	COG0306	phosphate transporter
BJD09_RS07470	COG1253	flavin adenine dinucleotide binding
BJD09_RS07485	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BJD09_RS07490	COG0477	Major facilitator Superfamily
BJD09_RS07500	COG1136	(ABC) transporter
BJD09_RS07515	COG0438	transferase activity, transferring glycosyl groups
BJD09_RS07525	COG2264	protein methyltransferase activity
BJD09_RS07560	COG2244	polysaccharide biosynthetic process
BJD09_RS07615	COG1595	DNA-templated transcription, initiation
BJD09_RS07630	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD09_RS07640	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD09_RS07650	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD09_RS07665	COG0784	Response regulator, receiver
BJD09_RS07665	COG4191	Histidine kinase
BJD09_RS07670	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
BJD09_RS07705	COG0840	transmembrane signaling receptor activity
BJD09_RS07765	COG0583	DNA-binding transcription factor activity
BJD09_RS07770	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD09_RS07775	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BJD09_RS07790	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BJD09_RS07795	COG0077	Prephenate dehydratase
BJD09_RS07795	COG1605	Chorismate mutase
BJD09_RS07800	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BJD09_RS07805	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BJD09_RS07810	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BJD09_RS07855	COG1228	amidohydrolase
BJD09_RS07860	COG2986	histidine ammonia-lyase
BJD09_RS07870	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BJD09_RS07885	COG4993	Dehydrogenase
BJD09_RS07895	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
BJD09_RS07910	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BJD09_RS07915	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BJD09_RS07920	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD09_RS07930	COG3115	cell septum assembly
BJD09_RS07940	COG0359	binds to the 23S rRNA
BJD09_RS07945	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BJD09_RS07950	COG0360	Binds together with S18 to 16S ribosomal RNA
BJD09_RS07955	COG0316	Belongs to the HesB IscA family
BJD09_RS07965	COG0017	Asparaginyl-tRNA synthetase
BJD09_RS07985	COG2808	Putative FMN-binding domain
BJD09_RS08050	COG0288	reversible hydration of carbon dioxide
BJD09_RS08055	COG0662	Cupin 2, conserved barrel domain protein
BJD09_RS08065	COG3844	kynureninase activity
BJD09_RS08070	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD09_RS08080	COG2925	Exonuclease
BJD09_RS08105	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BJD09_RS08110	COG0116	Belongs to the methyltransferase superfamily
BJD09_RS08110	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD09_RS08120	COG0488	(ABC) transporter
BJD09_RS08155	COG0494	nUDIX hydrolase
BJD09_RS08165	COG1024	Enoyl-CoA hydratase
BJD09_RS08175	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BJD09_RS08180	COG0659	secondary active sulfate transmembrane transporter activity
BJD09_RS08205	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD09_RS08210	COG0573	inorganic phosphate transmembrane transporter activity
BJD09_RS08215	COG0581	inorganic phosphate transmembrane transporter activity
BJD09_RS08220	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BJD09_RS08225	COG0704	Plays a role in the regulation of phosphate uptake
BJD09_RS08235	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD09_RS08245	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD09_RS08255	COG0557	exoribonuclease II activity
BJD09_RS08275	COG1960	acyl-CoA dehydrogenase activity
BJD09_RS08280	COG1960	acyl-CoA dehydrogenase activity
BJD09_RS08285	COG1960	acyl-CoA dehydrogenase activity
BJD09_RS08290	COG1960	acyl-CoA dehydrogenase activity
BJD09_RS08295	COG2226	methyltransferase
BJD09_RS08300	COG0646	methionine synthase
BJD09_RS08300	COG1410	methionine synthase
BJD09_RS08305	COG0646	methionine synthase
BJD09_RS08305	COG1410	methionine synthase
BJD09_RS08315	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD09_RS08340	COG2900	Belongs to the SlyX family
BJD09_RS08355	COG0386	Belongs to the glutathione peroxidase family
BJD09_RS08365	COG1725	Transcriptional regulator
BJD09_RS08370	COG1131	(ABC) transporter
BJD09_RS08400	COG1253	flavin adenine dinucleotide binding
BJD09_RS08420	COG2850	peptidyl-arginine hydroxylation
BJD09_RS08455	COG1132	(ABC) transporter
BJD09_RS08460	COG0583	DNA-binding transcription factor activity
BJD09_RS08490	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BJD09_RS08500	COG0484	heat shock protein binding
BJD09_RS08505	COG0443	Heat shock 70 kDa protein
BJD09_RS08510	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BJD09_RS08515	COG1420	regulation of RNA biosynthetic process
BJD09_RS08520	COG0497	DNA recombination
BJD09_RS08530	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD09_RS08545	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BJD09_RS08670	COG3706	GGDEF domain
BJD09_RS08715	COG0583	DNA-binding transcription factor activity
BJD09_RS08740	COG0415	Belongs to the DNA photolyase family
BJD09_RS08745	COG0305	Participates in initiation and elongation during chromosome replication
BJD09_RS08755	COG0367	asparagine synthase
BJD09_RS08775	COG1960	acyl-CoA dehydrogenase activity
BJD09_RS08790	COG0084	hydrolase, TatD family'
BJD09_RS08795	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BJD09_RS08850	COG0386	Belongs to the glutathione peroxidase family
BJD09_RS08860	COG0339	signal peptide processing
BJD09_RS08910	COG2814	Major facilitator Superfamily
BJD09_RS08915	COG1566	PFAM secretion protein HlyD family protein
BJD09_RS08945	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD09_RS08965	COG4774	siderophore transport
BJD09_RS08975	COG0367	asparagine synthase
BJD09_RS08980	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD09_RS08985	COG1393	Belongs to the ArsC family
BJD09_RS08995	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BJD09_RS09035	COG0052	Belongs to the universal ribosomal protein uS2 family
BJD09_RS09040	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BJD09_RS09050	COG0528	UMP kinase activity
BJD09_RS09055	COG0233	cytoplasmic translational termination
BJD09_RS09060	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BJD09_RS09065	COG0575	Belongs to the CDS family
BJD09_RS09070	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BJD09_RS09075	COG0750	zinc metalloprotease
BJD09_RS09090	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD09_RS09095	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD09_RS09100	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD09_RS09105	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD09_RS09110	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BJD09_RS09120	COG0825	malonyl-CoA metabolic process
BJD09_RS09135	COG1981	membrane
BJD09_RS09155	COG1695	Transcriptional regulator
BJD09_RS09175	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD09_RS09185	COG2040	homocysteine
BJD09_RS09190	COG0833	amino acid
BJD09_RS09195	COG0346	lactoylglutathione lyase activity
BJD09_RS09200	COG1131	(ABC) transporter
BJD09_RS09215	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD09_RS09215	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD09_RS09225	COG2878	Part of a membrane complex involved in electron transport
BJD09_RS09245	COG1595	DNA-templated transcription, initiation
BJD09_RS09270	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD09_RS09285	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD09_RS09290	COG0251	oxidation-reduction process
BJD09_RS09335	COG2814	Major facilitator Superfamily
BJD09_RS09340	COG1902	pentaerythritol trinitrate reductase activity
BJD09_RS09350	COG2824	Alkylphosphonate utilization operon protein PhnA
BJD09_RS09360	COG1047	Peptidyl-prolyl cis-trans
BJD09_RS09365	COG1077	Cell shape determining protein MreB Mrl
BJD09_RS09380	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD09_RS09390	COG5487	UPF0391 membrane protein
BJD09_RS09395	COG1451	nucleotide metabolic process
BJD09_RS09420	COG0183	Belongs to the thiolase family
BJD09_RS09455	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD09_RS09455	COG1793	dna ligase
BJD09_RS09465	COG1793	dna ligase
BJD09_RS09470	COG1201	RNA secondary structure unwinding
BJD09_RS09480	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD09_RS09485	COG1278	Cold shock
BJD09_RS09490	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BJD09_RS09495	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
BJD09_RS09500	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD09_RS09505	COG3046	protein related to deoxyribodipyrimidine photolyase
BJD09_RS09510	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
BJD09_RS09515	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BJD09_RS09520	COG2954	triphosphatase activity
BJD09_RS09525	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD09_RS09535	COG1381	Involved in DNA repair and RecF pathway recombination
BJD09_RS09540	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BJD09_RS09545	COG0571	ribonuclease III activity
BJD09_RS09560	COG0481	GTPase activity
BJD09_RS09565	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD09_RS09580	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD09_RS09580	COG1024	Enoyl-CoA hydratase
BJD09_RS09600	COG1024	Enoyl-CoA hydratase
BJD09_RS09605	COG1960	acyl-CoA dehydrogenase activity
BJD09_RS09625	COG3867	Arabinogalactan endo-beta-1,4-galactanase
BJD09_RS09630	COG3250	beta-galactosidase activity
BJD09_RS09655	COG3209	COG3209 Rhs family protein
BJD09_RS09675	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BJD09_RS09685	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BJD09_RS09705	COG0534	Mate efflux family protein
BJD09_RS09710	COG0534	Mate efflux family protein
BJD09_RS09715	COG0335	large ribosomal subunit rRNA binding
BJD09_RS09720	COG0336	Belongs to the RNA methyltransferase TrmD family
BJD09_RS09725	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BJD09_RS09730	COG0228	four-way junction DNA binding
BJD09_RS09735	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD09_RS09745	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BJD09_RS09750	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD09_RS09775	COG0784	Response regulator, receiver
BJD09_RS09775	COG4191	Histidine kinase
BJD09_RS09780	COG2205	protein histidine kinase activity
BJD09_RS09780	COG3850	Histidine kinase
BJD09_RS09780	COG4999	Histidine kinase
BJD09_RS09780	COG3437	response regulator, receiver
BJD09_RS09785	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD09_RS09795	COG2205	protein histidine kinase activity
BJD09_RS09800	COG5507	3-demethylubiquinone-9 3-methyltransferase
BJD09_RS09810	COG4771	TonB-dependent receptor
BJD09_RS09835	COG2172	sigma factor antagonist activity
BJD09_RS09840	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD09_RS09845	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD09_RS09860	COG0326	Molecular chaperone. Has ATPase activity
BJD09_RS09865	COG2207	Transcriptional regulator
BJD09_RS09875	COG3152	Membrane
BJD09_RS09890	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BJD09_RS09895	COG1845	cytochrome c oxidase, subunit III
BJD09_RS09900	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BJD09_RS09915	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BJD09_RS09920	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BJD09_RS09925	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BJD09_RS09930	COG0196	riboflavin kinase activity
BJD09_RS09940	COG0268	Binds directly to 16S ribosomal RNA
BJD09_RS09945	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BJD09_RS09950	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BJD09_RS09955	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BJD09_RS09960	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BJD09_RS09965	COG0824	Thioesterase
BJD09_RS09980	COG1946	Acyl-CoA thioesterase
BJD09_RS10000	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BJD09_RS10010	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BJD09_RS10040	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD09_RS10055	COG2197	response regulator
BJD09_RS10060	COG4585	Histidine kinase
BJD09_RS10075	COG0850	regulation of cytokinetic process
BJD09_RS10080	COG2894	cell division
BJD09_RS10085	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BJD09_RS10095	COG0642	Histidine kinase
BJD09_RS10100	COG0745	RESPONSE REGULATOR receiver
BJD09_RS10115	COG2194	sulfuric ester hydrolase activity
BJD09_RS10130	COG2814	Major facilitator Superfamily
BJD09_RS10135	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD09_RS10135	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD09_RS10145	COG0656	L-ascorbic acid biosynthetic process
BJD09_RS10150	COG0753	catalase activity
BJD09_RS10165	COG2207	Transcriptional regulator
BJD09_RS10165	COG1917	Cupin 2, conserved barrel domain protein
BJD09_RS10185	COG1506	peptidase
BJD09_RS10185	COG0823	Involved in the tonB-independent uptake of proteins
BJD09_RS10200	COG1297	OPT oligopeptide transporter protein
BJD09_RS10220	COG0587	DNA-directed DNA polymerase activity
BJD09_RS10235	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD09_RS10270	COG2080	2 iron, 2 sulfur cluster binding
BJD09_RS10275	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD09_RS10280	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD09_RS10305	COG0492	ferredoxin-NADP+ reductase activity
BJD09_RS10325	COG3537	Alpha-1,2-mannosidase
BJD09_RS10335	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS10340	COG3387	PFAM Glycoside hydrolase 15-related
BJD09_RS10350	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD09_RS10385	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
BJD09_RS10430	COG1309	transcriptional regulator
BJD09_RS10435	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS10440	COG0308	aminopeptidase N
BJD09_RS10445	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BJD09_RS10460	COG0330	HflC and HflK could
BJD09_RS10465	COG0330	HflC and HflK could
BJD09_RS10485	COG0678	peroxiredoxin activity
BJD09_RS10495	COG4953	penicillin-binding protein 1C
BJD09_RS10515	COG2373	Large extracellular alpha-helical protein
BJD09_RS10545	COG3609	addiction module antidote protein, CC2985 family
BJD09_RS10565	COG3829	transcription factor binding
BJD09_RS10590	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BJD09_RS10595	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BJD09_RS10610	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS10625	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD09_RS10630	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BJD09_RS10635	COG1399	metal-binding, possibly nucleic acid-binding protein
BJD09_RS10640	COG0424	maF-like protein
BJD09_RS10665	COG0714	Associated with various cellular activities
BJD09_RS10685	COG0537	adenosine 5'-monophosphoramidase activity
BJD09_RS10690	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BJD09_RS10695	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BJD09_RS10750	COG0314	molybdopterin synthase activity
BJD09_RS10755	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BJD09_RS10760	COG0315	cyclic pyranopterin monophosphate synthase activity
BJD09_RS10770	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BJD09_RS10775	COG1234	tRNA 3'-trailer cleavage
BJD09_RS10780	COG3642	lipopolysaccharide core region biosynthetic process
BJD09_RS10785	COG0859	PFAM glycosyl transferase family 9
BJD09_RS10800	COG0631	protein serine/threonine phosphatase activity
BJD09_RS10805	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD09_RS10810	COG0328	RNA-DNA hybrid ribonuclease activity
BJD09_RS10820	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD09_RS10830	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD09_RS10855	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BJD09_RS10865	COG0544	peptidyl-prolyl cis-trans isomerase activity
BJD09_RS11025	COG0473	3-isopropylmalate dehydrogenase activity
BJD09_RS11040	COG4783	chaperone-mediated protein folding
BJD09_RS11055	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BJD09_RS11065	COG0438	transferase activity, transferring glycosyl groups
BJD09_RS11070	COG0671	phosphoesterase, PA-phosphatase related
BJD09_RS11075	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD09_RS11085	COG3291	Pkd domain containing protein
BJD09_RS11095	COG2833	Protein of unknown function (DUF455)
BJD09_RS11115	COG0285	dihydrofolate synthase activity
BJD09_RS11120	COG0406	alpha-ribazole phosphatase activity
BJD09_RS11150	COG1063	alcohol dehydrogenase
BJD09_RS11160	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BJD09_RS11165	COG4208	sulfate ABC transporter
BJD09_RS11170	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BJD09_RS11175	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BJD09_RS11180	COG0156	8-amino-7-oxononanoate synthase activity
BJD09_RS11210	COG0604	alcohol dehydrogenase
BJD09_RS11215	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD09_RS11215	COG1902	pentaerythritol trinitrate reductase activity
BJD09_RS11230	COG0625	glutathione transferase activity
BJD09_RS11235	COG0039	L-malate dehydrogenase activity
BJD09_RS11240	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD09_RS11245	COG1217	gtp-binding protein TYPA
BJD09_RS11255	COG0154	amidase activity
BJD09_RS11265	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
BJD09_RS11285	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BJD09_RS11290	COG0203	ribosomal protein L17
BJD09_RS11315	COG0201	protein transport
BJD09_RS11320	COG0200	Binds to the 23S rRNA
BJD09_RS11325	COG1841	ribosomal large subunit assembly
BJD09_RS11335	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BJD09_RS11340	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BJD09_RS11345	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BJD09_RS11355	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BJD09_RS11360	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BJD09_RS11370	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BJD09_RS11375	COG0255	Belongs to the universal ribosomal protein uL29 family
BJD09_RS11380	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BJD09_RS11385	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BJD09_RS11395	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BJD09_RS11400	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BJD09_RS11405	COG0089	rRNA binding
BJD09_RS11410	COG0088	Forms part of the polypeptide exit tunnel
BJD09_RS11415	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BJD09_RS11420	COG0051	transcription antitermination factor activity, RNA binding
BJD09_RS11425	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD09_RS11430	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD09_RS11435	COG0049	tRNA binding
BJD09_RS11440	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BJD09_RS11445	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BJD09_RS11450	COG0085	RNA polymerase activity
BJD09_RS11455	COG0222	ribosome binding
BJD09_RS11460	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BJD09_RS11465	COG0081	regulation of translation
BJD09_RS11470	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BJD09_RS11475	COG0250	Participates in transcription elongation, termination and antitermination
BJD09_RS11490	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD09_RS11510	COG0012	GTP binding
BJD09_RS11515	COG0193	aminoacyl-tRNA hydrolase activity
BJD09_RS11520	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BJD09_RS11525	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BJD09_RS11535	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BJD09_RS11540	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BJD09_RS11555	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BJD09_RS11565	COG0521	Mo-molybdopterin cofactor biosynthetic process
BJD09_RS11585	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD09_RS11590	COG1295	ribonuclease BN
BJD09_RS11615	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BJD09_RS11620	COG1404	Belongs to the peptidase S8 family
BJD09_RS11630	COG1404	Belongs to the peptidase S8 family
BJD09_RS11635	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD09_RS11650	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BJD09_RS11675	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD09_RS11705	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD09_RS11705	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD09_RS11725	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD09_RS11735	COG3634	alkyl hydroperoxide reductase activity
BJD09_RS11740	COG0583	DNA-binding transcription factor activity
BJD09_RS11750	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD09_RS11755	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BJD09_RS11765	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD09_RS11775	COG2197	response regulator
BJD09_RS11780	COG5002	protein histidine kinase activity
BJD09_RS11780	COG2205	protein histidine kinase activity
BJD09_RS11780	COG0784	Response regulator, receiver
BJD09_RS11800	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD09_RS11810	COG0697	spore germination
BJD09_RS11835	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
BJD09_RS11850	COG3386	PFAM SMP-30 Gluconolaconase
BJD09_RS11870	COG1024	Enoyl-CoA hydratase
BJD09_RS11885	COG0583	DNA-binding transcription factor activity
BJD09_RS11890	COG3384	dioxygenase
BJD09_RS11920	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD09_RS11925	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD09_RS11940	COG2096	Adenosyltransferase
BJD09_RS11945	COG0123	including yeast histone deacetylase and acetoin utilization protein
BJD09_RS11960	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BJD09_RS11965	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD09_RS11970	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BJD09_RS11975	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BJD09_RS11980	COG2967	ApaG domain
BJD09_RS11985	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BJD09_RS11995	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BJD09_RS12005	COG0747	negative chemotaxis
BJD09_RS12030	COG0431	NADPH-dependent FMN reductase
BJD09_RS12035	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BJD09_RS12045	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD09_RS12050	COG1116	anion transmembrane transporter activity
BJD09_RS12060	COG3829	transcription factor binding
BJD09_RS12075	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BJD09_RS12080	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BJD09_RS12100	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD09_RS12110	COG0642	Histidine kinase
BJD09_RS12125	COG4181	ATPase activity
BJD09_RS12135	COG2175	clavaminate synthase activity
BJD09_RS12145	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BJD09_RS12150	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD09_RS12170	COG4771	TonB-dependent receptor
BJD09_RS12180	COG0667	Aldo Keto reductase
BJD09_RS12190	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD09_RS12195	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD09_RS12205	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD09_RS12210	COG4106	trans-aconitate 2-methyltransferase activity
BJD09_RS12220	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BJD09_RS12265	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BJD09_RS12280	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BJD09_RS12285	COG2226	methyltransferase
BJD09_RS12320	COG0366	Alpha amylase catalytic
BJD09_RS12350	COG0604	alcohol dehydrogenase
BJD09_RS12350	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS12350	COG3321	synthase
BJD09_RS12365	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD09_RS12375	COG0494	nUDIX hydrolase
BJD09_RS12380	COG0653	protein targeting
BJD09_RS12385	COG0739	heme binding
BJD09_RS12395	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BJD09_RS12410	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BJD09_RS12415	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD09_RS12420	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD09_RS12425	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BJD09_RS12435	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD09_RS12440	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BJD09_RS12445	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BJD09_RS12455	COG3116	cell division
BJD09_RS12460	COG0275	rRNA processing
BJD09_RS12495	COG0792	nuclease activity
BJD09_RS12500	COG1988	membrane-bound metal-dependent
BJD09_RS12505	COG0277	FAD linked oxidase domain protein
BJD09_RS12520	COG0745	RESPONSE REGULATOR receiver
BJD09_RS12525	COG2205	protein histidine kinase activity
BJD09_RS12530	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
BJD09_RS12535	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BJD09_RS12540	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BJD09_RS12565	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BJD09_RS12570	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD09_RS12575	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BJD09_RS12595	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD09_RS12595	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD09_RS12605	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BJD09_RS12610	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BJD09_RS12620	COG0488	(ABC) transporter
BJD09_RS12630	COG0697	spore germination
BJD09_RS12640	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD09_RS12655	COG3791	Glutathione-dependent formaldehyde-activating
BJD09_RS12685	COG2205	protein histidine kinase activity
BJD09_RS12705	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD09_RS12710	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BJD09_RS12725	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD09_RS12740	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BJD09_RS12745	COG1012	belongs to the aldehyde dehydrogenase family
BJD09_RS12750	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BJD09_RS12755	COG0617	tRNA 3'-terminal CCA addition
BJD09_RS12765	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD09_RS12770	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD09_RS12775	COG1609	Transcriptional regulator
BJD09_RS12785	COG2188	Transcriptional regulator
BJD09_RS12850	COG1459	type II secretion system
BJD09_RS12910	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD09_RS12915	COG4191	Histidine kinase
BJD09_RS12920	COG0784	Response regulator, receiver
BJD09_RS12925	COG4251	negative regulation of phosphorylation
BJD09_RS12930	COG2823	Periplasmic or secreted lipoprotein
BJD09_RS12935	COG0673	inositol 2-dehydrogenase activity
BJD09_RS12940	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
BJD09_RS12975	COG1051	belongs to the nudix hydrolase family
BJD09_RS12975	COG1056	cytidyltransferase-related domain
BJD09_RS12985	COG0583	DNA-binding transcription factor activity
BJD09_RS13000	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BJD09_RS13005	COG0321	lipoyl(octanoyl) transferase activity
BJD09_RS13010	COG2921	Belongs to the UPF0250 family
BJD09_RS13020	COG1686	Belongs to the peptidase S11 family
BJD09_RS13030	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BJD09_RS13035	COG2951	lytic endotransglycosylase activity
BJD09_RS13045	COG0772	Belongs to the SEDS family
BJD09_RS13060	COG1792	Involved in formation and maintenance of cell shape
BJD09_RS13065	COG1077	Cell shape determining protein MreB Mrl
BJD09_RS13070	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD09_RS13075	COG3284	Transcriptional regulator
BJD09_RS13125	COG0308	aminopeptidase N
BJD09_RS13130	COG3300	MHYT domain
BJD09_RS13130	COG5001	Diguanylate cyclase
BJD09_RS13135	COG2226	methyltransferase
BJD09_RS13160	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BJD09_RS13165	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BJD09_RS13170	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BJD09_RS13180	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BJD09_RS13190	COG2832	Protein of unknown function (DUF454)
BJD09_RS13205	COG0436	Aminotransferase
BJD09_RS13210	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BJD09_RS13215	COG1505	serine-type exopeptidase activity
BJD09_RS13245	COG0181	hydroxymethylbilane synthase activity
BJD09_RS13255	COG3275	phosphorelay sensor kinase activity
BJD09_RS13265	COG2943	transferase activity, transferring hexosyl groups
BJD09_RS13295	COG0659	secondary active sulfate transmembrane transporter activity
BJD09_RS13300	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD09_RS13300	COG5297	Belongs to the glycosyl hydrolase family 6
BJD09_RS13305	COG0840	transmembrane signaling receptor activity
BJD09_RS13355	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BJD09_RS13375	COG1113	amino acid transport
BJD09_RS13390	COG0697	spore germination
BJD09_RS13430	COG0823	Involved in the tonB-independent uptake of proteins
BJD09_RS13430	COG1506	peptidase
BJD09_RS13440	COG2409	Drug exporters of the RND superfamily
BJD09_RS13465	COG0435	Glutathione S-transferase
BJD09_RS13475	COG4221	oxidoreductase activity
BJD09_RS13490	COG4221	oxidoreductase activity
BJD09_RS13550	COG1802	Transcriptional regulator
BJD09_RS13560	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BJD09_RS13585	COG3052	prosthetic group binding
BJD09_RS13615	COG2353	YceI-like domain
BJD09_RS13620	COG0778	Nitroreductase
BJD09_RS13640	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD09_RS13645	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BJD09_RS13655	COG3386	PFAM SMP-30 Gluconolaconase
BJD09_RS13670	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD09_RS13685	COG0459	protein refolding
BJD09_RS13700	COG2356	endonuclease I
BJD09_RS13705	COG0300	oxidoreductase activity
BJD09_RS13735	COG1324	tolerance protein
BJD09_RS13745	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BJD09_RS13750	COG0511	ligase activity, forming carbon-carbon bonds
BJD09_RS13760	COG0439	Biotin carboxylase
BJD09_RS13780	COG2264	protein methyltransferase activity
BJD09_RS13800	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BJD09_RS13805	COG4589	Belongs to the CDS family
BJD09_RS13830	COG0671	phosphoesterase, PA-phosphatase related
BJD09_RS13830	COG2453	phosphatase
BJD09_RS13835	COG2267	carboxylic ester hydrolase activity
BJD09_RS13840	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD09_RS13845	COG0138	bifunctional purine biosynthesis protein purh
BJD09_RS13855	COG0151	Belongs to the GarS family
BJD09_RS13870	COG2814	Major facilitator Superfamily
BJD09_RS13875	COG0583	DNA-binding transcription factor activity
BJD09_RS13880	COG2814	Major facilitator Superfamily
BJD09_RS13900	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD09_RS13930	COG0316	Belongs to the HesB IscA family
BJD09_RS13970	COG1051	belongs to the nudix hydrolase family
BJD09_RS13985	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BJD09_RS13995	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
BJD09_RS14005	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
BJD09_RS14010	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD09_RS14020	COG0134	indole-3-glycerol-phosphate synthase activity
BJD09_RS14025	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BJD09_RS14050	COG1597	lipid kinase activity
BJD09_RS14055	COG0456	acetyltransferase
BJD09_RS14070	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BJD09_RS14075	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BJD09_RS14095	COG3179	chitinase
BJD09_RS14120	COG2111	Na H antiporter
BJD09_RS14120	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD09_RS14125	COG1006	Multisubunit Na H antiporter MnhC subunit
BJD09_RS14130	COG0651	ATP synthesis coupled electron transport
BJD09_RS14140	COG2212	antiporter activity
BJD09_RS14145	COG1320	monovalent cation:proton antiporter activity
BJD09_RS14165	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BJD09_RS14195	COG3483	tryptophan 2,3-dioxygenase activity
BJD09_RS14205	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BJD09_RS14225	COG0513	Belongs to the DEAD box helicase family
BJD09_RS14235	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS14240	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_RS14275	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS14280	COG0702	epimerase
BJD09_RS14305	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD09_RS14310	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD09_RS14315	COG0297	glycogen (starch) synthase activity
BJD09_RS14325	COG2354	Protein conserved in bacteria
BJD09_RS14330	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD09_RS14340	COG1368	sulfuric ester hydrolase activity
BJD09_RS14345	COG3264	Mechanosensitive ion channel
BJD09_RS14345	COG1511	domain protein
BJD09_RS14415	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BJD09_RS14500	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BJD09_RS14505	COG1040	competence protein
BJD09_RS14510	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BJD09_RS14515	COG0156	8-amino-7-oxononanoate synthase activity
BJD09_RS14525	COG2267	carboxylic ester hydrolase activity
BJD09_RS14555	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BJD09_RS14565	COG0445	tRNA wobble uridine modification
BJD09_RS14575	COG0657	acetylesterase activity
BJD09_RS14585	COG1414	Transcriptional regulator
BJD09_RS14595	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BJD09_RS14600	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD09_RS14610	COG3485	protocatechuate 3,4-dioxygenase
BJD09_RS14615	COG3485	protocatechuate 3,4-dioxygenase
BJD09_RS14625	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BJD09_RS14630	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BJD09_RS14655	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BJD09_RS14660	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BJD09_RS14715	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BJD09_RS14730	COG0129	dihydroxy-acid dehydratase activity
BJD09_RS14770	COG1733	regulation of RNA biosynthetic process
BJD09_RS14775	COG0702	epimerase
BJD09_RS14810	COG0583	DNA-binding transcription factor activity
BJD09_RS14815	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD09_RS14820	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD09_RS14840	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_RS14845	COG2205	protein histidine kinase activity
BJD09_RS14850	COG0745	RESPONSE REGULATOR receiver
BJD09_RS14870	COG1902	pentaerythritol trinitrate reductase activity
BJD09_RS14875	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BJD09_RS14890	COG2814	Major facilitator Superfamily
BJD09_RS14895	COG0583	DNA-binding transcription factor activity
BJD09_RS14910	COG0084	hydrolase, TatD family'
BJD09_RS14935	COG2252	PERMEase
BJD09_RS14980	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD09_RS15000	COG2072	flavoprotein involved in K transport
BJD09_RS15005	COG2351	hydroxyisourate hydrolase activity
BJD09_RS15010	COG4807	Protein conserved in bacteria
BJD09_RS15020	COG1643	Atp-dependent helicase
BJD09_RS15035	COG1187	pseudouridine synthase activity
BJD09_RS15050	COG2130	NADP-dependent
BJD09_RS15080	COG1764	response to oxidative stress
BJD09_RS15085	COG1846	Transcriptional regulator
BJD09_RS15090	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BJD09_RS15100	COG0697	spore germination
BJD09_RS15110	COG0523	cobalamin synthesis protein
BJD09_RS15170	COG1960	acyl-CoA dehydrogenase activity
BJD09_RS15175	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BJD09_RS15180	COG4770	biotin carboxylase activity
BJD09_RS15210	COG2224	Isocitrate lyase
BJD09_RS15215	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BJD09_RS15220	COG0583	DNA-binding transcription factor activity
BJD09_RS15225	COG0475	glutathione-regulated potassium exporter activity
BJD09_RS15255	COG0339	signal peptide processing
BJD09_RS15280	COG0564	pseudouridine synthase activity
BJD09_RS15290	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD09_RS15305	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD09_RS15320	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD09_RS15325	COG0318	PFAM AMP-dependent synthetase and ligase
BJD09_RS15330	COG0727	PFAM Uncharacterised protein family (UPF0153)
BJD09_RS15335	COG0596	Alpha beta hydrolase
BJD09_RS15345	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD09_RS15360	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BJD09_RS15385	COG2205	protein histidine kinase activity
BJD09_RS15390	COG0028	Belongs to the TPP enzyme family
BJD09_RS15405	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BJD09_RS15410	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BJD09_RS15415	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD09_RS15450	COG0183	Belongs to the thiolase family
BJD09_RS15460	COG0346	lactoylglutathione lyase activity
BJD09_RS15470	COG2032	superoxide dismutase activity
BJD09_RS15475	COG2032	superoxide dismutase activity
BJD09_RS15480	COG2204	response regulator
BJD09_RS15485	COG3852	Histidine kinase
BJD09_RS15490	COG0004	ammonium transporteR
BJD09_RS15495	COG0347	Belongs to the P(II) protein family
BJD09_RS15500	COG0174	glutamine synthetase
BJD09_RS15510	COG1968	undecaprenyl-diphosphatase activity
BJD09_RS15555	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_RS15565	COG2062	phosphohistidine phosphatase, SixA
BJD09_RS15570	COG0489	protein tyrosine kinase activity
BJD09_RS15595	COG1396	sequence-specific DNA binding
BJD09_RS15615	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD09_RS15630	COG1125	glycine betaine transport
BJD09_RS15645	COG1119	ATPase activity
BJD09_RS15655	COG1752	Esterase of the alpha-beta hydrolase superfamily
BJD09_RS15665	COG1522	sequence-specific DNA binding
BJD09_RS15670	COG3186	Phenylalanine-4-hydroxylase
BJD09_RS15685	COG2755	lipolytic protein G-D-S-L family
BJD09_RS15695	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS15700	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BJD09_RS15710	COG1609	Transcriptional regulator
BJD09_RS15715	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD09_RS15730	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BJD09_RS15740	COG0657	acetylesterase activity
BJD09_RS15740	COG2755	lipolytic protein G-D-S-L family
BJD09_RS15765	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD09_RS15770	COG0366	Alpha amylase catalytic
BJD09_RS15775	COG0366	Alpha amylase catalytic
BJD09_RS15860	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD09_RS15865	COG3710	Transcriptional regulator
BJD09_RS15885	COG2197	response regulator
BJD09_RS15890	COG4585	Histidine kinase
BJD09_RS15905	COG1304	FMN binding
BJD09_RS15930	COG1012	belongs to the aldehyde dehydrogenase family
BJD09_RS15935	COG0662	Cupin 2, conserved barrel domain protein
BJD09_RS15945	COG4772	TonB-dependent receptor
BJD09_RS15955	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
BJD09_RS15985	COG0714	Associated with various cellular activities
BJD09_RS16025	COG0477	Major facilitator Superfamily
BJD09_RS16035	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD09_RS16085	COG3237	CsbD-like
BJD09_RS16155	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD09_RS16180	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS16185	COG0300	oxidoreductase activity
BJD09_RS16205	COG1272	protein, Hemolysin III
BJD09_RS16210	COG1111	helicase
BJD09_RS16210	COG1205	dead DEAH box helicase
BJD09_RS16305	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BJD09_RS16335	COG1132	(ABC) transporter
BJD09_RS16365	COG0367	asparagine synthase
BJD09_RS16385	COG0297	glycogen (starch) synthase activity
BJD09_RS16385	COG0438	transferase activity, transferring glycosyl groups
BJD09_RS16390	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
BJD09_RS16405	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BJD09_RS16455	COG0070	glutamate synthase
BJD09_RS16455	COG0067	glutamate synthase
BJD09_RS16455	COG0069	glutamate synthase activity
BJD09_RS16460	COG0493	'glutamate synthase
BJD09_RS16470	COG1064	alcohol dehydrogenase
BJD09_RS16485	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD09_RS16495	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD09_RS16505	COG2234	aminopeptidase activity
BJD09_RS16515	COG4942	peptidase
BJD09_RS16520	COG0793	Belongs to the peptidase S41A family
BJD09_RS16565	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_RS16575	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BJD09_RS16605	COG0501	Belongs to the peptidase M48B family
BJD09_RS16615	COG0187	DNA topoisomerase II activity
BJD09_RS16620	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD09_RS16630	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BJD09_RS16645	COG0594	ribonuclease P activity
BJD09_RS16650	COG0706	membrane insertase activity
BJD09_RS16655	COG0726	polysaccharide deacetylase
BJD09_RS16660	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BJD09_RS16675	COG0584	glycerophosphoryl diester phosphodiesterase
BJD09_RS16690	COG0861	Integral membrane protein TerC family
BJD09_RS16700	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD09_RS16715	COG2271	Major facilitator Superfamily
BJD09_RS16720	COG1929	Belongs to the glycerate kinase type-1 family
BJD09_RS16725	COG3835	regulator
BJD09_RS16730	COG3706	GGDEF domain
BJD09_RS16745	COG3537	Alpha-1,2-mannosidase
BJD09_RS16750	COG0531	amino acid
BJD09_RS16760	COG0625	glutathione transferase activity
BJD09_RS16780	COG0604	alcohol dehydrogenase
BJD09_RS16785	COG1322	Protein conserved in bacteria
BJD09_RS16795	COG0386	Belongs to the glutathione peroxidase family
BJD09_RS16805	COG2853	Lipoprotein
BJD09_RS16820	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD09_RS16825	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD09_RS16830	COG1127	ABC transporter
BJD09_RS16845	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BJD09_RS16850	COG1074	ATP-dependent DNA helicase activity
BJD09_RS16890	COG0439	Biotin carboxylase
BJD09_RS16940	COG0564	pseudouridine synthase activity
BJD09_RS16965	COG1487	ribonuclease activity
BJD09_RS16970	COG4691	Plasmid stability protein
BJD09_RS16990	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_RS17000	COG0477	Major facilitator Superfamily
BJD09_RS17005	COG1289	transmembrane transporter activity
BJD09_RS17015	COG1566	PFAM secretion protein HlyD family protein
BJD09_RS17030	COG0302	gtp cyclohydrolase
BJD09_RS17050	COG0730	response to heat
BJD09_RS17055	COG3012	SEC-C Motif Domain Protein
BJD09_RS17065	COG0676	glucose-6-phosphate 1-epimerase activity
BJD09_RS17085	COG3135	benzoate transporter
BJD09_RS17120	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BJD09_RS17130	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
BJD09_RS17140	COG1435	thymidine kinase activity
BJD09_RS17145	COG0210	DNA helicase
BJD09_RS17160	COG3132	Protein of unknown function, DUF480
BJD09_RS17170	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BJD09_RS17175	COG0284	orotidine-5'-phosphate decarboxylase activity
BJD09_RS17205	COG2937	Belongs to the GPAT DAPAT family
BJD09_RS17270	COG2211	Major facilitator Superfamily
BJD09_RS17285	COG3693	PFAM glycoside hydrolase, family 10
BJD09_RS17300	COG1904	glucuronate isomerase
BJD09_RS17305	COG3250	beta-galactosidase activity
BJD09_RS17315	COG3386	PFAM SMP-30 Gluconolaconase
BJD09_RS17390	COG0246	Mannitol dehydrogenase
BJD09_RS17395	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD09_RS17405	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_RS17415	COG3661	Belongs to the glycosyl hydrolase 67 family
BJD09_RS17425	COG2115	Belongs to the xylose isomerase family
BJD09_RS17435	COG0037	tRNA processing
BJD09_RS17440	COG2974	May be involved in recombination
BJD09_RS17465	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BJD09_RS17475	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD09_RS17480	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD09_RS17485	COG0805	protein transport
BJD09_RS17495	COG0519	Catalyzes the synthesis of GMP from XMP
BJD09_RS17495	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD09_RS17510	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD09_RS17515	COG0752	glycyl-tRNA synthetase alpha subunit
BJD09_RS17550	COG0729	surface antigen
BJD09_RS17555	COG2911	Protein conserved in bacteria
BJD09_RS17575	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD09_RS17585	COG3265	gluconokinase activity
BJD09_RS17590	COG2211	Major facilitator Superfamily
BJD09_RS17595	COG3459	Glycosyltransferase 36 associated
BJD09_RS17610	COG2205	protein histidine kinase activity
BJD09_RS17615	COG1971	Probably functions as a manganese efflux pump
BJD09_RS17620	COG1414	Transcriptional regulator
BJD09_RS17625	COG0738	Major facilitator superfamily
BJD09_RS17630	COG3254	rhamnose metabolic process
BJD09_RS17640	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_RS17650	COG0179	Fumarylacetoacetate (FAA) hydrolase
BJD09_RS17655	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS17675	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD09_RS17705	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BJD09_RS17715	COG3162	membrane
BJD09_RS17720	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD09_RS17730	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD09_RS17740	COG1940	carbohydrate kinase activity
BJD09_RS17740	COG1846	Transcriptional regulator
BJD09_RS17745	COG0708	Exodeoxyribonuclease III
BJD09_RS17760	COG2091	lysine biosynthetic process via aminoadipic acid
BJD09_RS17770	COG3540	Alkaline phosphatase
BJD09_RS17775	COG0357	Ribosomal RNA small subunit methyltransferase G
BJD09_RS17795	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_RS17815	COG2159	amidohydrolase
BJD09_RS17830	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD09_RS17835	COG0583	DNA-binding transcription factor activity
BJD09_RS17840	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_RS17855	COG0210	DNA helicase
BJD09_RS18025	COG0631	protein serine/threonine phosphatase activity
BJD09_RS18030	COG2815	serine threonine protein kinase
BJD09_RS18030	COG0515	serine threonine protein kinase
BJD09_RS18070	COG0408	coproporphyrinogen oxidase activity
BJD09_RS18090	COG0823	Involved in the tonB-independent uptake of proteins
BJD09_RS18090	COG1506	peptidase
BJD09_RS18090	COG4946	Tricorn protease homolog
BJD09_RS18120	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD09_RS18135	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD09_RS18175	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS18195	COG0463	Glycosyl transferase, family 2
BJD09_RS18205	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD09_RS18210	COG3100	YcgL domain-containing protein
BJD09_RS18225	COG3387	PFAM Glycoside hydrolase 15-related
BJD09_RS18230	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD09_RS18250	COG2239	Acts as a magnesium transporter
BJD09_RS18255	COG1042	CoA-binding domain protein
BJD09_RS18255	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD09_RS18255	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD09_RS18270	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD09_RS18280	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD09_RS18315	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD09_RS18325	COG0842	Transport permease protein
BJD09_RS18330	COG1131	(ABC) transporter
BJD09_RS18335	COG0543	2 iron, 2 sulfur cluster binding
BJD09_RS18335	COG0633	Ferredoxin
BJD09_RS18380	COG1476	TRANSCRIPTIONal
BJD09_RS18390	COG4555	ABC transporter
BJD09_RS18430	COG0625	glutathione transferase activity
BJD09_RS18495	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BJD09_RS18510	COG1199	ATP-dependent helicase activity
BJD09_RS18550	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD09_RS18600	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BJD09_RS18615	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BJD09_RS18660	COG3237	CsbD-like
BJD09_RS18665	COG0180	Tryptophanyl-tRNA synthetase
BJD09_RS18670	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD09_RS18690	COG0697	spore germination
BJD09_RS18715	COG1136	(ABC) transporter
BJD09_RS18720	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_RS18725	COG4585	Histidine kinase
BJD09_RS18730	COG2197	response regulator
BJD09_RS18745	COG0753	catalase activity
BJD09_RS18760	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD09_RS18765	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD09_RS18790	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD09_RS18820	COG0642	Histidine kinase
BJD09_RS18830	COG1090	epimerase
BJD09_RS18865	COG1690	Belongs to the RtcB family
BJD09_RS18905	COG4943	cyclic-guanylate-specific phosphodiesterase activity
BJD09_RS18920	COG0606	chelatase, subunit chli
BJD09_RS18960	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BJD09_RS18965	COG1166	arginine decarboxylase activity
BJD09_RS18970	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BJD09_RS18980	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BJD09_RS18980	COG2755	lipolytic protein G-D-S-L family
BJD09_RS18985	COG4221	oxidoreductase activity
BJD09_RS19000	COG0018	arginyl-trna synthetase
BJD09_RS19005	COG2003	Belongs to the UPF0758 family
BJD09_RS19010	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BJD09_RS19015	COG0756	dUTP diphosphatase activity
BJD09_RS19035	COG0463	Glycosyl transferase, family 2
BJD09_RS19055	COG1475	DNA binding
BJD09_RS19060	COG1192	Involved in chromosome partitioning
BJD09_RS19070	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BJD09_RS19075	COG0708	Exodeoxyribonuclease III
BJD09_RS19080	COG2211	Major facilitator Superfamily
BJD09_RS19090	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BJD09_RS19095	COG0739	heme binding
BJD09_RS19100	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BJD09_RS19145	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BJD09_RS19160	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BJD09_RS19190	COG0109	protoheme IX farnesyltransferase activity
BJD09_RS19205	COG0358	DNA primase activity
BJD09_RS19210	COG1295	ribonuclease BN
BJD09_RS19220	COG1610	YqeY-like protein
BJD09_RS19230	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BJD09_RS19235	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BJD09_RS19245	COG2133	pyrroloquinoline quinone binding
BJD09_RS19250	COG4682	membrane
BJD09_RS19265	COG0531	amino acid
BJD09_RS19275	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_RS19285	COG3023	N-Acetylmuramoyl-L-alanine amidase
BJD09_RS19290	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
BJD09_RS19335	COG5383	Protein conserved in bacteria
BJD09_RS19345	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_RS19350	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_RS19355	COG1473	amidohydrolase
BJD09_RS19360	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD09_RS19360	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD09_RS19365	COG1652	LysM domain
BJD09_RS19375	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
BJD09_RS19380	COG1518	maintenance of DNA repeat elements
BJD09_RS19425	COG0583	DNA-binding transcription factor activity
BJD09_RS19430	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
BJD09_RS19435	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BJD09_RS19440	COG3118	belongs to the thioredoxin family
BJD09_RS19445	COG0513	Belongs to the DEAD box helicase family
BJD09_RS19450	COG2884	Cell division ATP-binding protein ftsE
BJD09_RS19455	COG2177	Part of the ABC transporter FtsEX involved in
BJD09_RS19460	COG3437	response regulator, receiver
BJD09_RS19465	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BJD09_RS19470	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD09_RS19475	COG2860	membrane
BJD09_RS19480	COG1252	NADH dehydrogenase
BJD09_RS19495	COG0625	glutathione transferase activity
BJD09_RS19500	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BJD09_RS19520	COG0534	Mate efflux family protein
BJD09_RS19525	COG0616	signal peptide processing
BJD09_RS19535	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS19550	COG0009	L-threonylcarbamoyladenylate synthase
BJD09_RS19555	COG1754	DNA topoisomerase type I activity
BJD09_RS19555	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD09_RS19570	COG2922	Belongs to the Smg family
BJD09_RS19575	COG0758	DNA mediated transformation
BJD09_RS19580	COG1652	LysM domain
BJD09_RS19585	COG0242	peptide deformylase activity
BJD09_RS19590	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BJD09_RS19595	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD09_RS19595	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD09_RS19650	COG1560	Kdo2-lipid A biosynthetic process
BJD09_RS19655	COG1490	D-aminoacyl-tRNA deacylase activity
BJD09_RS19660	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD09_RS19695	COG0024	Methionine aminopeptidase
BJD09_RS19740	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD09_RS19760	COG0840	transmembrane signaling receptor activity
BJD09_RS19795	COG0251	oxidation-reduction process
BJD09_RS19870	COG1063	alcohol dehydrogenase
BJD09_RS19885	COG1132	(ABC) transporter
BJD09_RS19905	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BJD09_RS19910	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS19925	COG1294	oxidase, subunit
BJD09_RS19930	COG1271	oxidase subunit
BJD09_RS19980	COG3546	catalase activity
BJD09_RS19985	COG3685	Protein conserved in bacteria
BJD09_RS20010	COG2972	Histidine kinase
BJD09_RS20025	COG0531	amino acid
BJD09_RS20060	COG0667	Aldo Keto reductase
BJD09_RS20070	COG0583	DNA-binding transcription factor activity
BJD09_RS20080	COG3384	dioxygenase
BJD09_RS20090	COG1573	uracil-dna glycosylase
BJD09_RS20095	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
BJD09_RS20105	COG0025	NhaP-type Na H and K H
BJD09_RS20110	COG1131	(ABC) transporter
BJD09_RS20115	COG0842	Transport permease protein
BJD09_RS20175	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_RS20180	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BJD09_RS20200	COG2205	protein histidine kinase activity
BJD09_RS20200	COG2202	Pas domain
BJD09_RS20220	COG2813	Specifically methylates the guanine in position
BJD09_RS20225	COG1187	pseudouridine synthase activity
BJD09_RS20230	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD09_RS20250	COG0784	Response regulator, receiver
BJD09_RS20250	COG2198	Histidine kinase
BJD09_RS20250	COG5002	protein histidine kinase activity
BJD09_RS20260	COG1666	GTP binding
BJD09_RS20265	COG0697	spore germination
BJD09_RS20270	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BJD09_RS20275	COG2011	ABC-type metal ion transport system permease component
BJD09_RS20315	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD09_RS20325	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD09_RS20345	COG0356	it plays a direct role in the translocation of protons across the membrane
BJD09_RS20355	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BJD09_RS20360	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BJD09_RS20365	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BJD09_RS20370	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BJD09_RS20375	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BJD09_RS20380	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BJD09_RS20395	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BJD09_RS20400	COG4191	Histidine kinase
BJD09_RS20415	COG0577	efflux transmembrane transporter activity
BJD09_RS20420	COG0577	efflux transmembrane transporter activity
BJD09_RS20420	COG1136	(ABC) transporter
BJD09_RS20425	COG1136	(ABC) transporter
BJD09_RS20425	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD09_RS20430	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_RS20435	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD09_RS20490	COG0339	signal peptide processing
BJD09_RS20505	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD09_RS20510	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BJD09_RS20525	COG2819	hydrolase of the alpha beta superfamily
BJD09_RS20535	COG1956	GAF domain-containing protein
BJD09_RS20540	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BJD09_RS20550	COG0720	synthase
BJD09_RS20560	COG4206	TonB-dependent receptor
BJD09_RS20570	COG0513	Belongs to the DEAD box helicase family
BJD09_RS20585	COG0625	glutathione transferase activity
BJD09_RS20620	COG0626	cystathionine gamma-synthase activity
BJD09_RS20640	COG1216	Glycosyl transferase, family 2
BJD09_RS20640	COG0438	transferase activity, transferring glycosyl groups
BJD09_RS20670	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD09_RS20685	COG0277	FAD linked oxidase domain protein
BJD09_RS20690	COG0546	phosphoglycolate phosphatase activity
BJD09_RS20690	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BJD09_RS20705	COG2086	electron transfer activity
BJD09_RS20740	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
BJD09_RS20740	COG0662	Cupin 2, conserved barrel domain protein
BJD09_RS20745	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD09_RS20780	COG3218	ABC-type transport auxiliary lipoprotein component
BJD09_RS20780	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD09_RS20785	COG1127	ABC transporter
BJD09_RS20790	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD09_RS20805	COG0442	prolyl-tRNA aminoacylation
BJD09_RS20815	COG1183	phosphatidylcholine synthase activity
BJD09_RS20845	COG0525	valine-tRNA ligase activity
BJD09_RS20860	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD09_RS20870	COG0795	lipopolysaccharide-transporting ATPase activity
BJD09_RS20885	COG4974	Belongs to the 'phage' integrase family
BJD09_RS20895	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD09_RS20910	COG0047	phosphoribosylformylglycinamidine synthase activity
BJD09_RS20910	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BJD09_RS20920	COG5295	Hep Hag repeat protein
BJD09_RS20925	COG1404	Belongs to the peptidase S8 family
BJD09_RS20930	COG5295	Hep Hag repeat protein
BJD09_RS20935	COG1404	Belongs to the peptidase S8 family
BJD09_RS20940	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD09_RS20950	COG1459	type II secretion system
BJD09_RS20955	COG2165	general secretion pathway protein
BJD09_RS20960	COG4970	Tfp pilus assembly protein FimT
BJD09_RS20965	COG2165	general secretion pathway protein
BJD09_RS20970	COG4795	General secretion pathway protein
BJD09_RS20975	COG3156	type II secretion system protein K
BJD09_RS20980	COG3166	PFAM Fimbrial assembly family protein
BJD09_RS20995	COG1450	Type ii and iii secretion system protein
BJD09_RS21005	COG2188	Transcriptional regulator
BJD09_RS21060	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BJD09_RS21075	COG1215	transferase activity, transferring glycosyl groups
BJD09_RS21080	COG1215	transferase activity, transferring glycosyl groups
BJD09_RS21085	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BJD09_RS21090	COG0457	Tetratricopeptide repeat
BJD09_RS21120	COG0242	peptide deformylase activity
BJD09_RS21125	COG1307	EDD domain protein, DegV family
BJD09_RS21170	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD09_RS21175	COG0726	polysaccharide deacetylase
BJD09_RS21180	COG4773	Receptor
BJD09_RS21210	COG1162	GTPase activity
BJD09_RS21235	COG2211	Major facilitator Superfamily
BJD09_RS21240	COG1609	Transcriptional regulator
BJD09_RS21245	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS21250	COG2851	Citrate transporter
BJD09_RS21270	COG0642	Histidine kinase
BJD09_RS21285	COG2197	response regulator
BJD09_RS21300	COG0667	Aldo Keto reductase
BJD09_RS21310	COG0583	DNA-binding transcription factor activity
BJD09_RS21335	COG1301	dicarboxylic acid transport
BJD09_RS21340	COG0280	phosphate acetyltransferase
BJD09_RS21340	COG0281	malic enzyme
BJD09_RS21365	COG1560	Kdo2-lipid A biosynthetic process
BJD09_RS21375	COG1519	Transferase
BJD09_RS21380	COG1538	Outer membrane efflux protein
BJD09_RS21385	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD09_RS21405	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BJD09_RS21410	COG0066	3-isopropylmalate dehydratase activity
BJD09_RS21415	COG0473	3-isopropylmalate dehydrogenase activity
BJD09_RS21440	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BJD09_RS21445	COG0405	Gamma-glutamyltransferase
BJD09_RS21450	COG0840	transmembrane signaling receptor activity
BJD09_RS21465	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BJD09_RS21470	COG3710	Transcriptional regulator
BJD09_RS21490	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BJD09_RS21500	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
BJD09_RS21515	COG0563	adenylate kinase activity
BJD09_RS21520	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD09_RS21530	COG3781	membrane
BJD09_RS21535	COG0671	phosphoesterase, PA-phosphatase related
BJD09_RS21545	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_RS21555	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD09_RS21560	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BJD09_RS21590	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD09_RS21605	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BJD09_RS21620	COG0352	thiamine-phosphate diphosphorylase activity
BJD09_RS21625	COG1773	rubredoxin
BJD09_RS21630	COG2912	Transglutaminase-like superfamily
BJD09_RS21640	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BJD09_RS21650	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BJD09_RS21670	COG3079	Belongs to the UPF0149 family
BJD09_RS21675	COG0006	proline dipeptidase activity
BJD09_RS21685	COG0006	proline dipeptidase activity
BJD09_RS21700	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BJD09_RS21705	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BJD09_RS21715	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BJD09_RS21720	COG1561	YicC-like family, N-terminal region
BJD09_RS21725	COG0194	GDP metabolic process
BJD09_RS21735	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD09_RS21745	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD09_RS21770	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BJD09_RS21825	COG2304	oxidoreductase activity
BJD09_RS21840	COG1301	dicarboxylic acid transport
BJD09_RS21845	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD09_RS21850	COG0596	Alpha beta hydrolase
BJD09_RS21855	COG4773	Receptor
BJD09_RS21865	COG0739	heme binding
BJD09_RS21870	COG1376	ErfK ybiS ycfS ynhG family protein
BJD09_RS21905	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
BJD09_RS21910	COG4149	molybdate abc transporter
BJD09_RS21915	COG0725	ABC transporter, periplasmic molybdate-binding protein
BJD09_RS21920	COG3453	Protein conserved in bacteria
BJD09_RS21920	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD09_RS21930	COG3047	cAMP biosynthetic process
BJD09_RS21935	COG3047	cAMP biosynthetic process
BJD09_RS21945	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD09_RS21970	COG0126	phosphoglycerate kinase activity
BJD09_RS21980	COG0469	pyruvate kinase activity
BJD09_RS21995	COG3588	fructose-bisphosphate aldolase
BJD09_RS22000	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BJD09_RS22015	COG1648	precorrin-2 dehydrogenase activity
BJD09_RS22015	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD09_RS22035	COG2198	Histidine kinase
BJD09_RS22035	COG0784	Response regulator, receiver
BJD09_RS22035	COG2205	protein histidine kinase activity
BJD09_RS22055	COG0175	sulfate reduction
BJD09_RS22060	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD09_RS22065	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD09_RS22070	COG0175	sulfate reduction
BJD09_RS22075	COG2895	sulfate adenylyltransferase (ATP) activity
BJD09_RS22075	COG0529	Catalyzes the synthesis of activated sulfate
BJD09_RS22085	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_RS22125	COG0308	aminopeptidase N
BJD09_RS22135	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD09_RS22150	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_RS22155	COG3250	beta-galactosidase activity
BJD09_RS22165	COG1609	Transcriptional regulator
BJD09_RS22175	COG1970	mechanosensitive ion channel activity
BJD09_RS22200	COG3273	potassium ion transport
BJD09_RS22200	COG0471	metal ion transport
BJD09_RS22205	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BJD09_RS22215	COG2022	thiamine diphosphate biosynthetic process
BJD09_RS22245	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BJD09_RS22370	COG0784	Response regulator, receiver
BJD09_RS22370	COG4191	Histidine kinase
BJD09_RS22375	COG4191	Histidine kinase
BJD09_RS22375	COG0784	Response regulator, receiver
BJD09_RS22400	COG2003	Belongs to the UPF0758 family
BJD09_RS22485	COG0745	RESPONSE REGULATOR receiver
BJD09_RS22490	COG5002	protein histidine kinase activity
BJD09_RS22520	COG0237	dephospho-CoA kinase activity
BJD09_RS22525	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BJD09_RS22560	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD09_RS22575	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD09_RS22580	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BJD09_RS22605	COG2369	cell adhesion
BJD09_RS22635	COG2951	lytic endotransglycosylase activity
BJD09_RS22665	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD09_RS22665	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BJD09_RS22675	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD09_RS22680	COG0564	pseudouridine synthase activity
BJD09_RS22695	COG3011	Protein conserved in bacteria
BJD09_RS22700	COG0840	transmembrane signaling receptor activity
BJD09_RS22720	COG3387	PFAM Glycoside hydrolase 15-related
BJD09_RS22725	COG1877	trehalose-phosphatase activity
BJD09_RS22765	COG2827	Endonuclease containing a URI domain
BJD09_RS22770	COG4771	TonB-dependent receptor
BJD09_RS22775	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BJD09_RS22780	COG0667	Aldo Keto reductase
BJD09_RS22785	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BJD09_RS22790	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD09_RS22795	COG1116	anion transmembrane transporter activity
BJD09_RS22800	COG0542	response to heat
BJD09_RS22805	COG4206	TonB-dependent receptor
BJD09_RS22825	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD09_RS22835	COG1492	cobalamin metabolic process
BJD09_RS22845	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BJD09_RS22870	COG0019	diaminopimelate decarboxylase activity
BJD09_RS22885	COG4264	IucA IucC family
BJD09_RS22895	COG4772	TonB-dependent receptor
BJD09_RS22920	COG4651	solute:proton antiporter activity
BJD09_RS22920	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD09_RS22960	COG0488	(ABC) transporter
BJD09_RS23005	COG0477	Major facilitator Superfamily
BJD09_RS23020	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BJD09_RS23035	COG0217	transcriptional regulatory protein
BJD09_RS23040	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BJD09_RS23045	COG0632	four-way junction helicase activity
BJD09_RS23050	COG3158	transport of potassium into the cell
BJD09_RS23060	COG2255	four-way junction helicase activity
BJD09_RS23065	COG0824	Thioesterase
BJD09_RS23075	COG0848	biopolymer transport protein
BJD09_RS23085	COG0823	Involved in the tonB-independent uptake of proteins
BJD09_RS23090	COG2885	chlorophyll binding
BJD09_RS23100	COG0602	queuosine metabolic process
BJD09_RS23110	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BJD09_RS23115	COG3920	Histidine kinase
BJD09_RS23135	COG0840	transmembrane signaling receptor activity
BJD09_RS23170	COG0514	ATP-dependent DNA helicase (RecQ)
BJD09_RS23180	COG0783	Belongs to the Dps family
BJD09_RS23185	COG1643	Atp-dependent helicase
BJD09_RS23200	COG0837	glucose binding
BJD09_RS23220	COG0535	radical SAM domain protein
BJD09_RS23225	COG0535	radical SAM domain protein
BJD09_RS23230	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
BJD09_RS23235	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BJD09_RS23245	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD09_RS23260	COG1215	transferase activity, transferring glycosyl groups
BJD09_RS23265	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD09_RS23275	COG1199	ATP-dependent helicase activity
BJD09_RS23285	COG1397	ADP-ribosylglycohydrolase
BJD09_RS23295	COG0189	ligase activity
BJD09_RS23310	COG0835	chemotaxis
BJD09_RS23315	COG0840	transmembrane signaling receptor activity
BJD09_RS23470	COG1199	ATP-dependent helicase activity
BJD09_RS23480	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
BJD09_RS23490	COG0745	RESPONSE REGULATOR receiver
BJD09_RS23640	COG1475	DNA binding
BJD09_RS23675	COG0629	single-stranded DNA binding
BJD09_RS23700	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD09_RS23800	COG4232	protein-disulfide reductase activity
BJD09_RS23890	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_RS23895	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_RS23910	COG0010	Belongs to the arginase family
BJD09_RS23965	COG2132	Multicopper oxidase
BJD09_RS23995	COG0653	protein targeting
BJD09_RS24020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD09_RS24035	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD09_RS24045	COG0431	NADPH-dependent FMN reductase
BJD09_RS24050	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BJD09_RS24095	COG4644	lycopene metabolic process
BJD09_RS24120	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BJD09_RS24440	COG3318	Belongs to the UPF0149 family
BJD09_RS24440	COG3012	SEC-C Motif Domain Protein
BJD09_RS24505	COG3318	Belongs to the UPF0149 family
BJD09_RS24505	COG3012	SEC-C Motif Domain Protein
BJD09_RS24525	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD09_RS24570	COG2951	lytic endotransglycosylase activity
BJD09_RS24680	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD09_RS24715	COG1192	Involved in chromosome partitioning
BJD09_RS24840	COG2948	multi-organism process
BJD09_RS24845	COG3504	Conjugal transfer protein
BJD09_RS24960	COG4456	Virulence-associated protein
BJD09_RS24965	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD09_RS24970	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD09_RS25240	COG1525	nuclease