locus-tag class description AMD15_RS00315 PF00150 Cellulase (glycosyl hydrolase family 5) AMD15_RS00325 PF00150 Cellulase (glycosyl hydrolase family 5) AMD15_RS00380 PF00310 Glutamine amidotransferases class-II AMD15_RS00380 PF04898 Glutamate synthase central domain AMD15_RS00380 PF01493 GXGXG motif AMD15_RS00380 PF01645 Conserved region in glutamate synthase AMD15_RS00490 PF08299 Bacterial dnaA protein helix-turn-helix AMD15_RS00490 PF00308 Bacterial dnaA protein AMD15_RS00490 PF11638 DnaA N-terminal domain AMD15_RS00495 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD15_RS00495 PF02767 DNA polymerase III beta subunit, central domain AMD15_RS00495 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD15_RS00500 PF02463 RecF/RecN/SMC N terminal domain AMD15_RS00505 PF01751 Toprim domain AMD15_RS00505 PF18053 DNA gyrase B subunit insert domain AMD15_RS00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS00505 PF00204 DNA gyrase B AMD15_RS00505 PF00986 DNA gyrase B subunit, carboxyl terminus AMD15_RS00515 PF01435 Peptidase family M48 AMD15_RS00525 PF03544 Gram-negative bacterial TonB protein C-terminal AMD15_RS00530 PF01618 MotA/TolQ/ExbB proton channel family AMD15_RS00535 PF02472 Biopolymer transport protein ExbD/TolR AMD15_RS00540 PF02472 Biopolymer transport protein ExbD/TolR AMD15_RS00545 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD15_RS00555 PF13396 Phospholipase_D-nuclease N-terminal AMD15_RS00555 PF13091 PLD-like domain AMD15_RS00570 PF04055 Radical SAM superfamily AMD15_RS00580 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD15_RS00595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD15_RS00595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD15_RS00600 PF03572 Peptidase family S41 AMD15_RS00600 PF13180 PDZ domain AMD15_RS00605 PF01551 Peptidase family M23 AMD15_RS00615 PF04389 Peptidase family M28 AMD15_RS00625 PF00150 Cellulase (glycosyl hydrolase family 5) AMD15_RS00630 PF00150 Cellulase (glycosyl hydrolase family 5) AMD15_RS00635 PF00150 Cellulase (glycosyl hydrolase family 5) AMD15_RS00640 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS00640 PF00107 Zinc-binding dehydrogenase AMD15_RS00645 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS00645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD15_RS00650 PF04898 Glutamate synthase central domain AMD15_RS00650 PF01645 Conserved region in glutamate synthase AMD15_RS00650 PF00310 Glutamine amidotransferases class-II AMD15_RS00650 PF01493 GXGXG motif AMD15_RS00680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS00680 PF03466 LysR substrate binding domain AMD15_RS00695 PF02397 Bacterial sugar transferase AMD15_RS00700 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD15_RS00710 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD15_RS00715 PF00534 Glycosyl transferases group 1 AMD15_RS00715 PF13439 Glycosyltransferase Family 4 AMD15_RS00735 PF13537 Glutamine amidotransferase domain AMD15_RS00735 PF00733 Asparagine synthase AMD15_RS00750 PF16363 GDP-mannose 4,6 dehydratase AMD15_RS00765 PF00005 ABC transporter AMD15_RS00765 PF00664 ABC transporter transmembrane region AMD15_RS00780 PF13537 Glutamine amidotransferase domain AMD15_RS00780 PF00733 Asparagine synthase AMD15_RS00795 PF07475 HPr Serine kinase C-terminal domain AMD15_RS00795 PF02603 HPr Serine kinase N terminus AMD15_RS00800 PF00685 Sulfotransferase domain AMD15_RS00875 PF00271 Helicase conserved C-terminal domain AMD15_RS00875 PF00270 DEAD/DEAH box helicase AMD15_RS00875 PF09369 Domain of unknown function (DUF1998) AMD15_RS00880 PF03006 Haemolysin-III related AMD15_RS00895 PF00106 short chain dehydrogenase AMD15_RS00905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS00905 PF03466 LysR substrate binding domain AMD15_RS00920 PF02525 Flavodoxin-like fold AMD15_RS00980 PF05532 CsbD-like AMD15_RS01000 PF01447 Thermolysin metallopeptidase, catalytic domain AMD15_RS01000 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD15_RS01000 PF16485 Protealysin propeptide AMD15_RS01010 PF13344 Haloacid dehalogenase-like hydrolase AMD15_RS01010 PF00293 NUDIX domain AMD15_RS01030 PF00085 Thioredoxin AMD15_RS01040 PF00083 Sugar (and other) transporter AMD15_RS01040 PF08946 Osmosensory transporter coiled coil AMD15_RS01080 PF07726 ATPase family associated with various cellular activities (AAA) AMD15_RS01080 PF17863 AAA lid domain AMD15_RS01110 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMD15_RS01115 PF00155 Aminotransferase class I and II AMD15_RS01120 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS01120 PF00593 TonB dependent receptor AMD15_RS01130 PF07883 Cupin domain AMD15_RS01135 PF00171 Aldehyde dehydrogenase family AMD15_RS01155 PF02735 Ku70/Ku80 beta-barrel domain AMD15_RS01160 PF01070 FMN-dependent dehydrogenase AMD15_RS01165 PF00144 Beta-lactamase AMD15_RS01170 PF07730 Histidine kinase AMD15_RS01175 PF00072 Response regulator receiver domain AMD15_RS01175 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS01195 PF18500 CadC C-terminal domain 1 AMD15_RS01195 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS01200 PF07055 Enoyl reductase FAD binding domain AMD15_RS01200 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMD15_RS01200 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMD15_RS01210 PF00294 pfkB family carbohydrate kinase AMD15_RS01270 PF13276 HTH-like domain AMD15_RS01270 PF00665 Integrase core domain AMD15_RS01270 PF13333 Integrase core domain AMD15_RS01275 PF11896 Domain of unknown function (DUF3416) AMD15_RS01275 PF00128 Alpha amylase, catalytic domain AMD15_RS01280 PF16657 Maltogenic Amylase, C-terminal domain AMD15_RS01280 PF00128 Alpha amylase, catalytic domain AMD15_RS01285 PF02806 Alpha amylase, C-terminal all-beta domain AMD15_RS01285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD15_RS01285 PF00128 Alpha amylase, catalytic domain AMD15_RS01295 PF00248 Aldo/keto reductase family AMD15_RS01300 PF00135 Carboxylesterase family AMD15_RS01305 PF07859 alpha/beta hydrolase fold AMD15_RS01305 PF13472 GDSL-like Lipase/Acylhydrolase family AMD15_RS01315 PF03480 Bacterial extracellular solute-binding protein, family 7 AMD15_RS01325 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMD15_RS01330 PF04616 Glycosyl hydrolases family 43 AMD15_RS01330 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD15_RS01335 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS01340 PF04962 KduI/IolB family AMD15_RS01355 PF00657 GDSL-like Lipase/Acylhydrolase AMD15_RS01370 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMD15_RS01375 PF01037 Lrp/AsnC ligand binding domain AMD15_RS01380 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS01380 PF07660 Secretin and TonB N terminus short domain AMD15_RS01380 PF00593 TonB dependent receptor AMD15_RS01385 PF01734 Patatin-like phospholipase AMD15_RS01395 PF00005 ABC transporter AMD15_RS01410 PF00005 ABC transporter AMD15_RS01415 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS01425 PF03781 Sulfatase-modifying factor enzyme 1 AMD15_RS01425 PF12867 DinB superfamily AMD15_RS01445 PF01381 Helix-turn-helix AMD15_RS01470 PF01883 Iron-sulfur cluster assembly protein AMD15_RS01470 PF10609 NUBPL iron-transfer P-loop NTPase AMD15_RS01485 PF13091 PLD-like domain AMD15_RS01490 PF03061 Thioesterase superfamily AMD15_RS01520 PF00107 Zinc-binding dehydrogenase AMD15_RS01520 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS01530 PF02673 Bacitracin resistance protein BacA AMD15_RS01535 PF00120 Glutamine synthetase, catalytic domain AMD15_RS01535 PF03951 Glutamine synthetase, beta-Grasp domain AMD15_RS01540 PF00543 Nitrogen regulatory protein P-II AMD15_RS01545 PF00909 Ammonium Transporter Family AMD15_RS01550 PF00989 PAS fold AMD15_RS01550 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS01550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS01555 PF02954 Bacterial regulatory protein, Fis family AMD15_RS01555 PF00158 Sigma-54 interaction domain AMD15_RS01555 PF00072 Response regulator receiver domain AMD15_RS01560 PF00080 Copper/zinc superoxide dismutase (SODC) AMD15_RS01565 PF00080 Copper/zinc superoxide dismutase (SODC) AMD15_RS01570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD15_RS01580 PF00108 Thiolase, N-terminal domain AMD15_RS01580 PF02803 Thiolase, C-terminal domain AMD15_RS01615 PF00581 Rhodanese-like domain AMD15_RS01620 PF02556 Preprotein translocase subunit SecB AMD15_RS01625 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD15_RS01625 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD15_RS01635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD15_RS01635 PF00205 Thiamine pyrophosphate enzyme, central domain AMD15_RS01635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD15_RS01640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS01645 PF00072 Response regulator receiver domain AMD15_RS01645 PF02954 Bacterial regulatory protein, Fis family AMD15_RS01645 PF00158 Sigma-54 interaction domain AMD15_RS01660 PF07690 Major Facilitator Superfamily AMD15_RS01665 PF00588 SpoU rRNA Methylase family AMD15_RS01680 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD15_RS01680 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD15_RS01685 PF02661 Fic/DOC family AMD15_RS01685 PF13784 Fic/DOC family N-terminal AMD15_RS01690 PF00561 alpha/beta hydrolase fold AMD15_RS01695 PF03692 Putative zinc- or iron-chelating domain AMD15_RS01700 PF00501 AMP-binding enzyme AMD15_RS01705 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD15_RS01720 PF01820 D-ala D-ala ligase N-terminus AMD15_RS01720 PF07478 D-ala D-ala ligase C-terminus AMD15_RS01730 PF03109 ABC1 family AMD15_RS01740 PF00849 RNA pseudouridylate synthase AMD15_RS01750 PF00472 RF-1 domain AMD15_RS01760 PF01112 Asparaginase AMD15_RS01765 PF01432 Peptidase family M3 AMD15_RS01770 PF12706 Beta-lactamase superfamily domain AMD15_RS01790 PF12833 Helix-turn-helix domain AMD15_RS01795 PF00999 Sodium/hydrogen exchanger family AMD15_RS01800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS01800 PF03466 LysR substrate binding domain AMD15_RS01805 PF01274 Malate synthase AMD15_RS01810 PF00463 Isocitrate lyase family AMD15_RS01815 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS01835 PF00326 Prolyl oligopeptidase family AMD15_RS01840 PF18140 Propionyl-coenzyme A carboxylase BT domain AMD15_RS01840 PF00289 Biotin carboxylase, N-terminal domain AMD15_RS01840 PF00364 Biotin-requiring enzyme AMD15_RS01840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD15_RS01840 PF02785 Biotin carboxylase C-terminal domain AMD15_RS01845 PF01039 Carboxyl transferase domain AMD15_RS01850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD15_RS01850 PF02770 Acyl-CoA dehydrogenase, middle domain AMD15_RS01850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD15_RS01905 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMD15_RS01905 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMD15_RS01930 PF03969 AFG1-like ATPase AMD15_RS01935 PF01047 MarR family AMD15_RS01940 PF02566 OsmC-like protein AMD15_RS01970 PF00107 Zinc-binding dehydrogenase AMD15_RS01970 PF16884 N-terminal domain of oxidoreductase AMD15_RS01975 PF00248 Aldo/keto reductase family AMD15_RS01985 PF00849 RNA pseudouridylate synthase AMD15_RS01990 PF00593 TonB dependent receptor AMD15_RS02000 PF00271 Helicase conserved C-terminal domain AMD15_RS02000 PF04408 Helicase associated domain (HA2) AMD15_RS02000 PF00270 DEAD/DEAH box helicase AMD15_RS02000 PF08482 ATP-dependent helicase C-terminal AMD15_RS02010 PF07308 Protein of unknown function (DUF1456) AMD15_RS02015 PF00576 HIUase/Transthyretin family AMD15_RS02020 PF13454 FAD-NAD(P)-binding AMD15_RS02025 PF09349 OHCU decarboxylase AMD15_RS02025 PF01014 Uricase AMD15_RS02040 PF00266 Aminotransferase class-V AMD15_RS02045 PF07687 Peptidase dimerisation domain AMD15_RS02045 PF01546 Peptidase family M20/M25/M40 AMD15_RS02050 PF03466 LysR substrate binding domain AMD15_RS02050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS02055 PF07690 Major Facilitator Superfamily AMD15_RS02070 PF01425 Amidase AMD15_RS02075 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD15_RS02085 PF00860 Permease family AMD15_RS02095 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD15_RS02100 PF00355 Rieske [2Fe-2S] domain AMD15_RS02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS02105 PF03466 LysR substrate binding domain AMD15_RS02110 PF01026 TatD related DNase AMD15_RS02125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS02125 PF03466 LysR substrate binding domain AMD15_RS02130 PF07690 Major Facilitator Superfamily AMD15_RS02145 PF02146 Sir2 family AMD15_RS02150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD15_RS02155 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD15_RS02155 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD15_RS02165 PF00551 Formyl transferase AMD15_RS02170 PF00072 Response regulator receiver domain AMD15_RS02170 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS02175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS02175 PF00672 HAMP domain AMD15_RS02175 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS02180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS02180 PF00529 HlyD membrane-fusion protein of T1SS AMD15_RS02185 PF00873 AcrB/AcrD/AcrF family AMD15_RS02190 PF02321 Outer membrane efflux protein AMD15_RS02200 PF02219 Methylenetetrahydrofolate reductase AMD15_RS02205 PF02677 Epoxyqueuosine reductase QueH AMD15_RS02210 PF03466 LysR substrate binding domain AMD15_RS02210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS02215 PF03358 NADPH-dependent FMN reductase AMD15_RS02225 PF08267 Cobalamin-independent synthase, N-terminal domain AMD15_RS02225 PF01717 Cobalamin-independent synthase, Catalytic domain AMD15_RS02230 PF03812 2-keto-3-deoxygluconate permease AMD15_RS02240 PF05368 NmrA-like family AMD15_RS02245 PF01638 HxlR-like helix-turn-helix AMD15_RS02270 PF13276 HTH-like domain AMD15_RS02270 PF00665 Integrase core domain AMD15_RS02270 PF13333 Integrase core domain AMD15_RS02280 PF13495 Phage integrase, N-terminal SAM-like domain AMD15_RS02280 PF00589 Phage integrase family AMD15_RS02285 PF00920 Dehydratase family AMD15_RS02305 PF00132 Bacterial transferase hexapeptide (six repeats) AMD15_RS02315 PF07690 Major Facilitator Superfamily AMD15_RS02320 PF11871 Domain of unknown function (DUF3391) AMD15_RS02320 PF01966 HD domain AMD15_RS02340 PF00171 Aldehyde dehydrogenase family AMD15_RS02350 PF01494 FAD binding domain AMD15_RS02360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD15_RS02360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD15_RS02365 PF00230 Major intrinsic protein AMD15_RS02370 PF01266 FAD dependent oxidoreductase AMD15_RS02370 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMD15_RS02375 PF00455 DeoR C terminal sensor domain AMD15_RS02375 PF08220 DeoR-like helix-turn-helix domain AMD15_RS02380 PF00970 Oxidoreductase FAD-binding domain AMD15_RS02380 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD15_RS02385 PF00355 Rieske [2Fe-2S] domain AMD15_RS02390 PF01144 Coenzyme A transferase AMD15_RS02395 PF01144 Coenzyme A transferase AMD15_RS02400 PF00108 Thiolase, N-terminal domain AMD15_RS02400 PF02803 Thiolase, C-terminal domain AMD15_RS02405 PF00775 Dioxygenase AMD15_RS02405 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMD15_RS02415 PF10397 Adenylosuccinate lyase C-terminus AMD15_RS02415 PF00206 Lyase AMD15_RS02420 PF12146 Serine aminopeptidase, S33 AMD15_RS02425 PF02627 Carboxymuconolactone decarboxylase family AMD15_RS02435 PF09339 IclR helix-turn-helix domain AMD15_RS02435 PF01614 Bacterial transcriptional regulator AMD15_RS02445 PF07859 alpha/beta hydrolase fold AMD15_RS02450 PF10677 Protein of unknown function (DUF2490) AMD15_RS02455 PF01134 Glucose inhibited division protein A AMD15_RS02455 PF13932 GidA associated domain AMD15_RS02465 PF00291 Pyridoxal-phosphate dependent enzyme AMD15_RS02485 PF13649 Methyltransferase domain AMD15_RS02495 PF12697 Alpha/beta hydrolase family AMD15_RS02505 PF00155 Aminotransferase class I and II AMD15_RS02510 PF06968 Biotin and Thiamin Synthesis associated domain AMD15_RS02510 PF04055 Radical SAM superfamily AMD15_RS02520 PF01040 UbiA prenyltransferase family AMD15_RS02535 PF05819 NolX protein AMD15_RS02570 PF01313 Bacterial export proteins, family 3 AMD15_RS02575 PF00813 FliP family AMD15_RS02590 PF00771 FHIPEP family AMD15_RS02595 PF01312 FlhB HrpN YscU SpaS Family AMD15_RS02610 PF01514 Secretory protein of YscJ/FliF family AMD15_RS02625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD15_RS02625 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD15_RS02625 PF18269 T3SS EscN ATPase C-terminal domain AMD15_RS02635 PF01311 Bacterial export proteins, family 1 AMD15_RS02640 PF00263 Bacterial type II and III secretion system protein AMD15_RS02640 PF03958 Bacterial type II/III secretion system short domain AMD15_RS02650 PF01464 Transglycosylase SLT domain AMD15_RS02665 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMD15_RS02665 PF12795 Mechanosensitive ion channel porin domain AMD15_RS02665 PF00924 Mechanosensitive ion channel AMD15_RS02670 PF00884 Sulfatase AMD15_RS02675 PF03109 ABC1 family AMD15_RS02680 PF05661 Protein of unknown function (DUF808) AMD15_RS02685 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS02690 PF00534 Glycosyl transferases group 1 AMD15_RS02690 PF08323 Starch synthase catalytic domain AMD15_RS02695 PF00128 Alpha amylase, catalytic domain AMD15_RS02695 PF02806 Alpha amylase, C-terminal all-beta domain AMD15_RS02695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD15_RS02700 PF11941 Domain of unknown function (DUF3459) AMD15_RS02700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD15_RS02700 PF00128 Alpha amylase, catalytic domain AMD15_RS02705 PF02446 4-alpha-glucanotransferase AMD15_RS02710 PF00128 Alpha amylase, catalytic domain AMD15_RS02720 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD15_RS02720 PF00128 Alpha amylase, catalytic domain AMD15_RS02725 PF13460 NAD(P)H-binding AMD15_RS02745 PF06903 VirK protein AMD15_RS02750 PF02321 Outer membrane efflux protein AMD15_RS02765 PF00873 AcrB/AcrD/AcrF family AMD15_RS02780 PF00271 Helicase conserved C-terminal domain AMD15_RS02780 PF00270 DEAD/DEAH box helicase AMD15_RS02785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD15_RS02785 PF02817 e3 binding domain AMD15_RS02785 PF00364 Biotin-requiring enzyme AMD15_RS02795 PF02779 Transketolase, pyrimidine binding domain AMD15_RS02795 PF02780 Transketolase, C-terminal domain AMD15_RS02800 PF00676 Dehydrogenase E1 component AMD15_RS02810 PF03301 Tryptophan 2,3-dioxygenase AMD15_RS02815 PF00854 POT family AMD15_RS02825 PF01047 MarR family AMD15_RS02830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD15_RS02835 PF04209 homogentisate 1,2-dioxygenase AMD15_RS02850 PF03334 Na+/H+ antiporter subunit AMD15_RS02855 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMD15_RS02865 PF00361 Proton-conducting membrane transporter AMD15_RS02870 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD15_RS02875 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD15_RS02875 PF00361 Proton-conducting membrane transporter AMD15_RS02875 PF13244 Domain of unknown function (DUF4040) AMD15_RS02875 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMD15_RS02890 PF07504 Fungalysin/Thermolysin Propeptide Motif AMD15_RS02890 PF01483 Proprotein convertase P-domain AMD15_RS02890 PF01447 Thermolysin metallopeptidase, catalytic domain AMD15_RS02890 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD15_RS02895 PF00182 Chitinase class I AMD15_RS02915 PF01259 SAICAR synthetase AMD15_RS02920 PF00226 DnaJ domain AMD15_RS02920 PF05099 Tellurite resistance protein TerB AMD15_RS02930 PF00834 Ribulose-phosphate 3 epimerase family AMD15_RS02935 PF00583 Acetyltransferase (GNAT) family AMD15_RS02940 PF00781 Diacylglycerol kinase catalytic domain AMD15_RS02945 PF04715 Anthranilate synthase component I, N terminal region AMD15_RS02945 PF00425 chorismate binding enzyme AMD15_RS02955 PF00117 Glutamine amidotransferase class-I AMD15_RS02965 PF02885 Glycosyl transferase family, helical bundle domain AMD15_RS02965 PF00591 Glycosyl transferase family, a/b domain AMD15_RS02970 PF00218 Indole-3-glycerol phosphate synthase AMD15_RS02980 PF00325 Bacterial regulatory proteins, crp family AMD15_RS02980 PF00027 Cyclic nucleotide-binding domain AMD15_RS02985 PF02675 S-adenosylmethionine decarboxylase AMD15_RS02990 PF00893 Small Multidrug Resistance protein AMD15_RS02995 PF03232 Ubiquinone biosynthesis protein COQ7 AMD15_RS03000 PF00572 Ribosomal protein L13 AMD15_RS03005 PF00380 Ribosomal protein S9/S16 AMD15_RS03020 PF00293 NUDIX domain AMD15_RS03030 PF00210 Ferritin-like domain AMD15_RS03035 PF00072 Response regulator receiver domain AMD15_RS03035 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD15_RS03035 PF01627 Hpt domain AMD15_RS03035 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS03035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS03035 PF00672 HAMP domain AMD15_RS03040 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS03040 PF00072 Response regulator receiver domain AMD15_RS03060 PF01521 Iron-sulphur cluster biosynthesis AMD15_RS03080 PF00293 NUDIX domain AMD15_RS03080 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMD15_RS03080 PF09297 NADH pyrophosphatase zinc ribbon domain AMD15_RS03085 PF17113 Regulatory signalling modulator protein AmpE AMD15_RS03085 PF03186 CobD/Cbib protein AMD15_RS03105 PF07690 Major Facilitator Superfamily AMD15_RS03110 PF03466 LysR substrate binding domain AMD15_RS03110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS03115 PF07690 Major Facilitator Superfamily AMD15_RS03120 PF12805 FUSC-like inner membrane protein yccS AMD15_RS03130 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD15_RS03130 PF02843 Phosphoribosylglycinamide synthetase, C domain AMD15_RS03130 PF02844 Phosphoribosylglycinamide synthetase, N domain AMD15_RS03140 PF01808 AICARFT/IMPCHase bienzyme AMD15_RS03140 PF02142 MGS-like domain AMD15_RS03145 PF01066 CDP-alcohol phosphatidyltransferase AMD15_RS03150 PF12146 Serine aminopeptidase, S33 AMD15_RS03150 PF12147 Putative methyltransferase AMD15_RS03155 PF00782 Dual specificity phosphatase, catalytic domain AMD15_RS03185 PF02954 Bacterial regulatory protein, Fis family AMD15_RS03200 PF01381 Helix-turn-helix AMD15_RS03225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD15_RS03225 PF00289 Biotin carboxylase, N-terminal domain AMD15_RS03225 PF02785 Biotin carboxylase C-terminal domain AMD15_RS03235 PF00364 Biotin-requiring enzyme AMD15_RS03240 PF01220 Dehydroquinase class II AMD15_RS03245 PF11412 Disulphide bond corrector protein DsbC AMD15_RS03245 PF02683 Cytochrome C biogenesis protein transmembrane region AMD15_RS03250 PF03091 CutA1 divalent ion tolerance protein AMD15_RS03265 PF01852 START domain AMD15_RS03275 PF00106 short chain dehydrogenase AMD15_RS03280 PF04231 Endonuclease I AMD15_RS03285 PF00166 Chaperonin 10 Kd subunit AMD15_RS03290 PF00118 TCP-1/cpn60 chaperonin family AMD15_RS03300 PF00593 TonB dependent receptor AMD15_RS03300 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS03305 PF00793 DAHP synthetase I family AMD15_RS03320 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD15_RS03330 PF08335 GlnD PII-uridylyltransferase AMD15_RS03330 PF03710 Glutamate-ammonia ligase adenylyltransferase AMD15_RS03335 PF02592 Putative vitamin uptake transporter AMD15_RS03355 PF00881 Nitroreductase family AMD15_RS03360 PF04264 YceI-like domain AMD15_RS03385 PF16957 Malonate decarboxylase, alpha subunit, transporter AMD15_RS03390 PF06857 Malonate decarboxylase delta subunit (MdcD) AMD15_RS03395 PF01039 Carboxyl transferase domain AMD15_RS03405 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AMD15_RS03410 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AMD15_RS03415 PF00698 Acyl transferase domain AMD15_RS03425 PF00392 Bacterial regulatory proteins, gntR family AMD15_RS03425 PF07729 FCD domain AMD15_RS03430 PF13419 Haloacid dehalogenase-like hydrolase AMD15_RS03460 PF07745 Glycosyl hydrolase family 53 AMD15_RS03465 PF17831 Pyruvate dehydrogenase E1 component middle domain AMD15_RS03465 PF00456 Transketolase, thiamine diphosphate binding domain AMD15_RS03470 PF00665 Integrase core domain AMD15_RS03470 PF13276 HTH-like domain AMD15_RS03470 PF13333 Integrase core domain AMD15_RS03480 PF00106 short chain dehydrogenase AMD15_RS03495 PF00106 short chain dehydrogenase AMD15_RS03505 PF13409 Glutathione S-transferase, N-terminal domain AMD15_RS03530 PF12823 Domain of unknown function (DUF3817) AMD15_RS03530 PF03176 MMPL family AMD15_RS03535 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD15_RS03535 PF00326 Prolyl oligopeptidase family AMD15_RS03540 PF07759 Protein of unknown function (DUF1615) AMD15_RS03550 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS03575 PF00892 EamA-like transporter family AMD15_RS03580 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD15_RS03590 PF00324 Amino acid permease AMD15_RS03600 PF01544 CorA-like Mg2+ transporter protein AMD15_RS03610 PF01204 Trehalase AMD15_RS03620 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD15_RS03620 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD15_RS03645 PF08447 PAS fold AMD15_RS03645 PF08448 PAS fold AMD15_RS03645 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS03645 PF00563 EAL domain AMD15_RS03650 PF02203 Tar ligand binding domain homologue AMD15_RS03650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS03650 PF00672 HAMP domain AMD15_RS03655 PF00150 Cellulase (glycosyl hydrolase family 5) AMD15_RS03655 PF00553 Cellulose binding domain AMD15_RS03660 PF00916 Sulfate permease family AMD15_RS03660 PF01740 STAS domain AMD15_RS03665 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS03680 PF13632 Glycosyl transferase family group 2 AMD15_RS03690 PF07694 5TMR of 5TMR-LYT AMD15_RS03690 PF06580 Histidine kinase AMD15_RS03695 PF00072 Response regulator receiver domain AMD15_RS03695 PF04397 LytTr DNA-binding domain AMD15_RS03700 PF03900 Porphobilinogen deaminase, C-terminal domain AMD15_RS03700 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMD15_RS03725 PF00326 Prolyl oligopeptidase family AMD15_RS03725 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD15_RS03735 PF00155 Aminotransferase class I and II AMD15_RS03740 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD15_RS03740 PF00326 Prolyl oligopeptidase family AMD15_RS03745 PF04304 Protein of unknown function (DUF454) AMD15_RS03755 PF01678 Diaminopimelate epimerase AMD15_RS03765 PF00589 Phage integrase family AMD15_RS03765 PF02899 Phage integrase, N-terminal SAM-like domain AMD15_RS03770 PF00227 Proteasome subunit AMD15_RS03775 PF10431 C-terminal, D2-small domain, of ClpB protein AMD15_RS03775 PF07724 AAA domain (Cdc48 subfamily) AMD15_RS03775 PF00004 ATPase family associated with various cellular activities (AAA) AMD15_RS03785 PF13673 Acetyltransferase (GNAT) domain AMD15_RS03790 PF13533 Biotin-lipoyl like AMD15_RS03800 PF01209 ubiE/COQ5 methyltransferase family AMD15_RS03805 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS03805 PF00563 EAL domain AMD15_RS03805 PF03707 Bacterial signalling protein N terminal repeat AMD15_RS03810 PF01433 Peptidase family M1 domain AMD15_RS03810 PF11838 ERAP1-like C-terminal domain AMD15_RS03830 PF13360 PQQ-like domain AMD15_RS03835 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD15_RS03850 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS03850 PF00107 Zinc-binding dehydrogenase AMD15_RS03860 PF01590 GAF domain AMD15_RS03860 PF00158 Sigma-54 interaction domain AMD15_RS03860 PF02954 Bacterial regulatory protein, Fis family AMD15_RS03865 PF00294 pfkB family carbohydrate kinase AMD15_RS03875 PF04085 rod shape-determining protein MreC AMD15_RS03885 PF00905 Penicillin binding protein transpeptidase domain AMD15_RS03885 PF03717 Penicillin-binding Protein dimerisation domain AMD15_RS03890 PF01098 Cell cycle protein AMD15_RS03895 PF00295 Glycosyl hydrolases family 28 AMD15_RS03900 PF13406 Transglycosylase SLT domain AMD15_RS03905 PF05036 Sporulation related domain AMD15_RS03905 PF03330 Lytic transglycolase AMD15_RS03915 PF07943 Penicillin-binding protein 5, C-terminal domain AMD15_RS03915 PF00768 D-alanyl-D-alanine carboxypeptidase AMD15_RS03925 PF04359 Protein of unknown function (DUF493) AMD15_RS03930 PF03099 Biotin/lipoate A/B protein ligase family AMD15_RS03935 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMD15_RS03935 PF04055 Radical SAM superfamily AMD15_RS03940 PF11818 C-terminal domain of tail specific protease (DUF3340) AMD15_RS03940 PF00595 PDZ domain AMD15_RS03940 PF03572 Peptidase family S41 AMD15_RS03940 PF17804 Tail specific protease N-terminal domain AMD15_RS03950 PF03466 LysR substrate binding domain AMD15_RS03950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS03960 PF01467 Cytidylyltransferase-like AMD15_RS03960 PF00293 NUDIX domain AMD15_RS03995 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMD15_RS03995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD15_RS04000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD15_RS04000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD15_RS04005 PF04972 BON domain AMD15_RS04010 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS04010 PF01590 GAF domain AMD15_RS04010 PF00360 Phytochrome region AMD15_RS04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS04010 PF08446 PAS fold AMD15_RS04015 PF00072 Response regulator receiver domain AMD15_RS04020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS04020 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS04025 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD15_RS04070 PF00263 Bacterial type II and III secretion system protein AMD15_RS04070 PF03958 Bacterial type II/III secretion system short domain AMD15_RS04075 PF00437 Type II/IV secretion system protein AMD15_RS04080 PF00482 Type II secretion system (T2SS), protein F AMD15_RS04085 PF08334 Type II secretion system (T2SS), protein G AMD15_RS04085 PF07963 Prokaryotic N-terminal methylation motif AMD15_RS04090 PF07963 Prokaryotic N-terminal methylation motif AMD15_RS04090 PF12019 Type II transport protein GspH AMD15_RS04095 PF02501 Type II secretion system (T2SS), protein I AMD15_RS04095 PF07963 Prokaryotic N-terminal methylation motif AMD15_RS04100 PF07963 Prokaryotic N-terminal methylation motif AMD15_RS04100 PF11612 Type II secretion system (T2SS), protein J AMD15_RS04105 PF03934 Type II secretion system (T2SS), protein K AMD15_RS04145 PF00392 Bacterial regulatory proteins, gntR family AMD15_RS04145 PF07702 UTRA domain AMD15_RS04150 PF07690 Major Facilitator Superfamily AMD15_RS04155 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS04160 PF01380 SIS domain AMD15_RS04165 PF01979 Amidohydrolase family AMD15_RS04175 PF01966 HD domain AMD15_RS04175 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD15_RS04175 PF01743 Poly A polymerase head domain AMD15_RS04180 PF00732 GMC oxidoreductase AMD15_RS04180 PF05199 GMC oxidoreductase AMD15_RS04185 PF00171 Aldehyde dehydrogenase family AMD15_RS04190 PF02028 BCCT, betaine/carnitine/choline family transporter AMD15_RS04200 PF01323 DSBA-like thioredoxin domain AMD15_RS04210 PF00034 Cytochrome c AMD15_RS04215 PF01926 50S ribosome-binding GTPase AMD15_RS04220 PF00753 Metallo-beta-lactamase superfamily AMD15_RS04220 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMD15_RS04220 PF10996 Beta-Casp domain AMD15_RS04230 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMD15_RS04240 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS04240 PF00072 Response regulator receiver domain AMD15_RS04255 PF02583 Metal-sensitive transcriptional repressor AMD15_RS04260 PF00107 Zinc-binding dehydrogenase AMD15_RS04260 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS04265 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD15_RS04270 PF00756 Putative esterase AMD15_RS04280 PF00392 Bacterial regulatory proteins, gntR family AMD15_RS04280 PF00155 Aminotransferase class I and II AMD15_RS04285 PF02567 Phenazine biosynthesis-like protein AMD15_RS04290 PF00892 EamA-like transporter family AMD15_RS04300 PF12848 ABC transporter AMD15_RS04300 PF00005 ABC transporter AMD15_RS04310 PF00464 Serine hydroxymethyltransferase AMD15_RS04315 PF03477 ATP cone domain AMD15_RS04325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD15_RS04325 PF01872 RibD C-terminal domain AMD15_RS04335 PF00677 Lumazine binding domain AMD15_RS04340 PF00925 GTP cyclohydrolase II AMD15_RS04340 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMD15_RS04345 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMD15_RS04350 PF01029 NusB family AMD15_RS04355 PF02769 AIR synthase related protein, C-terminal domain AMD15_RS04355 PF00586 AIR synthase related protein, N-terminal domain AMD15_RS04375 PF03814 Potassium-transporting ATPase A subunit AMD15_RS04385 PF02669 K+-transporting ATPase, c chain AMD15_RS04390 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD15_RS04390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS04390 PF13492 GAF domain AMD15_RS04390 PF13493 Domain of unknown function (DUF4118) AMD15_RS04390 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS04395 PF00072 Response regulator receiver domain AMD15_RS04395 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS04410 PF02913 FAD linked oxidases, C-terminal domain AMD15_RS04410 PF01565 FAD binding domain AMD15_RS04415 PF04307 LexA-binding, inner membrane-associated putative hydrolase AMD15_RS04420 PF02021 Uncharacterised protein family UPF0102 AMD15_RS04430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD15_RS04445 PF02381 MraZ protein, putative antitoxin-like AMD15_RS04450 PF01795 MraW methylase family AMD15_RS04455 PF04999 Cell division protein FtsL AMD15_RS04460 PF00905 Penicillin binding protein transpeptidase domain AMD15_RS04460 PF03717 Penicillin-binding Protein dimerisation domain AMD15_RS04465 PF01225 Mur ligase family, catalytic domain AMD15_RS04465 PF08245 Mur ligase middle domain AMD15_RS04465 PF02875 Mur ligase family, glutamate ligase domain AMD15_RS04470 PF02875 Mur ligase family, glutamate ligase domain AMD15_RS04470 PF01225 Mur ligase family, catalytic domain AMD15_RS04470 PF08245 Mur ligase middle domain AMD15_RS04475 PF00953 Glycosyl transferase family 4 AMD15_RS04480 PF01098 Cell cycle protein AMD15_RS04485 PF04101 Glycosyltransferase family 28 C-terminal domain AMD15_RS04485 PF03033 Glycosyltransferase family 28 N-terminal domain AMD15_RS04490 PF02875 Mur ligase family, glutamate ligase domain AMD15_RS04490 PF08245 Mur ligase middle domain AMD15_RS04490 PF01225 Mur ligase family, catalytic domain AMD15_RS04495 PF07478 D-ala D-ala ligase C-terminus AMD15_RS04495 PF01820 D-ala D-ala ligase N-terminus AMD15_RS04500 PF08478 POTRA domain, FtsQ-type AMD15_RS04500 PF03799 Cell division protein FtsQ AMD15_RS04505 PF02491 SHS2 domain inserted in FTSA AMD15_RS04510 PF00091 Tubulin/FtsZ family, GTPase domain AMD15_RS04510 PF12327 FtsZ family, C-terminal domain AMD15_RS04515 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMD15_RS04525 PF01551 Peptidase family M23 AMD15_RS04525 PF01476 LysM domain AMD15_RS04525 PF08525 Opacity-associated protein A N-terminal motif AMD15_RS04530 PF07517 SecA DEAD-like domain AMD15_RS04530 PF07516 SecA Wing and Scaffold domain AMD15_RS04530 PF01043 SecA preprotein cross-linking domain AMD15_RS04530 PF02810 SEC-C motif AMD15_RS04535 PF00293 NUDIX domain AMD15_RS04545 PF02219 Methylenetetrahydrofolate reductase AMD15_RS04555 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS04555 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD15_RS04555 PF00107 Zinc-binding dehydrogenase AMD15_RS04555 PF00550 Phosphopantetheine attachment site AMD15_RS04555 PF14765 Polyketide synthase dehydratase AMD15_RS04555 PF00698 Acyl transferase domain AMD15_RS04555 PF16197 Ketoacyl-synthetase C-terminal extension AMD15_RS04555 PF08659 KR domain AMD15_RS04555 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD15_RS04560 PF09286 Pro-kumamolisin, activation domain AMD15_RS04560 PF00082 Subtilase family AMD15_RS04570 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD15_RS04575 PF00128 Alpha amylase, catalytic domain AMD15_RS04605 PF13649 Methyltransferase domain AMD15_RS04610 PF05221 S-adenosyl-L-homocysteine hydrolase AMD15_RS04610 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD15_RS04620 PF00311 Phosphoenolpyruvate carboxylase AMD15_RS04650 PF00328 Histidine phosphatase superfamily (branch 2) AMD15_RS04655 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMD15_RS04655 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMD15_RS04655 PF02772 S-adenosylmethionine synthetase, central domain AMD15_RS04665 PF13649 Methyltransferase domain AMD15_RS04670 PF01207 Dihydrouridine synthase (Dus) AMD15_RS04680 PF00294 pfkB family carbohydrate kinase AMD15_RS04685 PF07662 Na+ dependent nucleoside transporter C-terminus AMD15_RS04685 PF01773 Na+ dependent nucleoside transporter N-terminus AMD15_RS04685 PF07670 Nucleoside recognition AMD15_RS04690 PF00248 Aldo/keto reductase family AMD15_RS04700 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS04700 PF00593 TonB dependent receptor AMD15_RS04720 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS04725 PF00005 ABC transporter AMD15_RS04735 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMD15_RS04745 PF00005 ABC transporter AMD15_RS04750 PF13472 GDSL-like Lipase/Acylhydrolase family AMD15_RS04755 PF00072 Response regulator receiver domain AMD15_RS04755 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS04760 PF08521 Two-component sensor kinase N-terminal AMD15_RS04760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS04760 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS04770 PF01219 Prokaryotic diacylglycerol kinase AMD15_RS04790 PF01790 Prolipoprotein diacylglyceryl transferase AMD15_RS04795 PF00303 Thymidylate synthase AMD15_RS04805 PF00186 Dihydrofolate reductase AMD15_RS04810 PF00158 Sigma-54 interaction domain AMD15_RS04815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD15_RS04815 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD15_RS04820 PF00005 ABC transporter AMD15_RS04825 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS04835 PF00296 Luciferase-like monooxygenase AMD15_RS04840 PF03358 NADPH-dependent FMN reductase AMD15_RS04860 PF00296 Luciferase-like monooxygenase AMD15_RS04865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD15_RS04870 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS04875 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS04875 PF12911 N-terminal TM domain of oligopeptide transport permease C AMD15_RS04880 PF00005 ABC transporter AMD15_RS04880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD15_RS04885 PF00149 Calcineurin-like phosphoesterase AMD15_RS04890 PF04379 ApaG domain AMD15_RS04895 PF00398 Ribosomal RNA adenine dimethylase AMD15_RS04900 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMD15_RS04905 PF09312 SurA N-terminal domain AMD15_RS04905 PF00639 PPIC-type PPIASE domain AMD15_RS04910 PF03968 OstA-like protein AMD15_RS04910 PF04453 LPS transport system D AMD15_RS04920 PF00850 Histone deacetylase domain AMD15_RS04925 PF01923 Cobalamin adenosyltransferase AMD15_RS04935 PF01494 FAD binding domain AMD15_RS04940 PF01494 FAD binding domain AMD15_RS04960 PF00392 Bacterial regulatory proteins, gntR family AMD15_RS04960 PF07729 FCD domain AMD15_RS04965 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD15_RS04970 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AMD15_RS04970 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD15_RS04975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS04975 PF03466 LysR substrate binding domain AMD15_RS04980 PF13193 AMP-binding enzyme C-terminal domain AMD15_RS04980 PF00501 AMP-binding enzyme AMD15_RS04985 PF00171 Aldehyde dehydrogenase family AMD15_RS04990 PF00378 Enoyl-CoA hydratase/isomerase AMD15_RS05010 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD15_RS05015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD15_RS05015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD15_RS05020 PF01728 FtsJ-like methyltransferase AMD15_RS05020 PF18125 RlmM ferredoxin-like domain AMD15_RS05045 PF00892 EamA-like transporter family AMD15_RS05055 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMD15_RS05055 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD15_RS05070 PF00072 Response regulator receiver domain AMD15_RS05070 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS05075 PF01627 Hpt domain AMD15_RS05075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD15_RS05075 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS05075 PF00672 HAMP domain AMD15_RS05075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS05075 PF00072 Response regulator receiver domain AMD15_RS05080 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS05080 PF00072 Response regulator receiver domain AMD15_RS05090 PF01625 Peptide methionine sulfoxide reductase AMD15_RS05100 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMD15_RS05105 PF14760 Rnk N-terminus AMD15_RS05105 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD15_RS05110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS05110 PF03466 LysR substrate binding domain AMD15_RS05115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS05115 PF13192 Thioredoxin domain AMD15_RS05120 PF00578 AhpC/TSA family AMD15_RS05120 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD15_RS05125 PF17827 PrmC N-terminal domain AMD15_RS05125 PF05175 Methyltransferase small domain AMD15_RS05130 PF00561 alpha/beta hydrolase fold AMD15_RS05140 PF00293 NUDIX domain AMD15_RS05145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD15_RS05145 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD15_RS05145 PF00476 DNA polymerase family A AMD15_RS05145 PF01612 3'-5' exonuclease AMD15_RS05175 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD15_RS05175 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMD15_RS05175 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMD15_RS05200 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD15_RS05205 PF02233 NAD(P) transhydrogenase beta subunit AMD15_RS05220 PF01063 Amino-transferase class IV AMD15_RS05225 PF04151 Bacterial pre-peptidase C-terminal domain AMD15_RS05225 PF00082 Subtilase family AMD15_RS05230 PF00082 Subtilase family AMD15_RS05230 PF04151 Bacterial pre-peptidase C-terminal domain AMD15_RS05235 PF00082 Subtilase family AMD15_RS05235 PF04151 Bacterial pre-peptidase C-terminal domain AMD15_RS05240 PF04073 Aminoacyl-tRNA editing domain AMD15_RS05260 PF03358 NADPH-dependent FMN reductase AMD15_RS05265 PF03631 Virulence factor BrkB AMD15_RS05270 PF08534 Redoxin AMD15_RS05275 PF00708 Acylphosphatase AMD15_RS05285 PF03976 Polyphosphate kinase 2 (PPK2) AMD15_RS05290 PF00994 Probable molybdopterin binding domain AMD15_RS05300 PF00472 RF-1 domain AMD15_RS05300 PF03462 PCRF domain AMD15_RS05305 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMD15_RS05305 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMD15_RS05305 PF01488 Shikimate / quinate 5-dehydrogenase AMD15_RS05315 PF03550 Outer membrane lipoprotein LolB AMD15_RS05320 PF08544 GHMP kinases C terminal AMD15_RS05320 PF00288 GHMP kinases N terminal domain AMD15_RS05330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD15_RS05330 PF14572 Phosphoribosyl synthetase-associated domain AMD15_RS05335 PF01386 Ribosomal L25p family AMD15_RS05335 PF14693 Ribosomal protein TL5, C-terminal domain AMD15_RS05340 PF01195 Peptidyl-tRNA hydrolase AMD15_RS05345 PF06071 Protein of unknown function (DUF933) AMD15_RS05345 PF01926 50S ribosome-binding GTPase AMD15_RS05365 PF03144 Elongation factor Tu domain 2 AMD15_RS05365 PF03143 Elongation factor Tu C-terminal domain AMD15_RS05365 PF00009 Elongation factor Tu GTP binding domain AMD15_RS05375 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMD15_RS05380 PF00467 KOW motif AMD15_RS05380 PF02357 Transcription termination factor nusG AMD15_RS05385 PF03946 Ribosomal protein L11, N-terminal domain AMD15_RS05385 PF00298 Ribosomal protein L11, RNA binding domain AMD15_RS05390 PF00687 Ribosomal protein L1p/L10e family AMD15_RS05395 PF00466 Ribosomal protein L10 AMD15_RS05400 PF16320 Ribosomal protein L7/L12 dimerisation domain AMD15_RS05400 PF00542 Ribosomal protein L7/L12 C-terminal domain AMD15_RS05405 PF00562 RNA polymerase Rpb2, domain 6 AMD15_RS05405 PF10385 RNA polymerase beta subunit external 1 domain AMD15_RS05405 PF04565 RNA polymerase Rpb2, domain 3 AMD15_RS05405 PF04560 RNA polymerase Rpb2, domain 7 AMD15_RS05405 PF04563 RNA polymerase beta subunit AMD15_RS05405 PF04561 RNA polymerase Rpb2, domain 2 AMD15_RS05410 PF04983 RNA polymerase Rpb1, domain 3 AMD15_RS05410 PF00623 RNA polymerase Rpb1, domain 2 AMD15_RS05410 PF05000 RNA polymerase Rpb1, domain 4 AMD15_RS05410 PF04997 RNA polymerase Rpb1, domain 1 AMD15_RS05410 PF04998 RNA polymerase Rpb1, domain 5 AMD15_RS05415 PF00164 Ribosomal protein S12/S23 AMD15_RS05420 PF00177 Ribosomal protein S7p/S5e AMD15_RS05425 PF14492 Elongation Factor G, domain II AMD15_RS05425 PF00009 Elongation factor Tu GTP binding domain AMD15_RS05425 PF03144 Elongation factor Tu domain 2 AMD15_RS05425 PF03764 Elongation factor G, domain IV AMD15_RS05425 PF00679 Elongation factor G C-terminus AMD15_RS05430 PF00009 Elongation factor Tu GTP binding domain AMD15_RS05430 PF03144 Elongation factor Tu domain 2 AMD15_RS05430 PF03143 Elongation factor Tu C-terminal domain AMD15_RS05435 PF00338 Ribosomal protein S10p/S20e AMD15_RS05440 PF00297 Ribosomal protein L3 AMD15_RS05445 PF00573 Ribosomal protein L4/L1 family AMD15_RS05450 PF00276 Ribosomal protein L23 AMD15_RS05455 PF00181 Ribosomal Proteins L2, RNA binding domain AMD15_RS05455 PF03947 Ribosomal Proteins L2, C-terminal domain AMD15_RS05460 PF00203 Ribosomal protein S19 AMD15_RS05465 PF00237 Ribosomal protein L22p/L17e AMD15_RS05470 PF07650 KH domain AMD15_RS05470 PF00189 Ribosomal protein S3, C-terminal domain AMD15_RS05475 PF00252 Ribosomal protein L16p/L10e AMD15_RS05480 PF00831 Ribosomal L29 protein AMD15_RS05485 PF00366 Ribosomal protein S17 AMD15_RS05490 PF00238 Ribosomal protein L14p/L23e AMD15_RS05495 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMD15_RS05495 PF00467 KOW motif AMD15_RS05500 PF00281 Ribosomal protein L5 AMD15_RS05500 PF00673 ribosomal L5P family C-terminus AMD15_RS05505 PF00253 Ribosomal protein S14p/S29e AMD15_RS05510 PF00410 Ribosomal protein S8 AMD15_RS05515 PF00347 Ribosomal protein L6 AMD15_RS05520 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMD15_RS05525 PF03719 Ribosomal protein S5, C-terminal domain AMD15_RS05525 PF00333 Ribosomal protein S5, N-terminal domain AMD15_RS05530 PF00327 Ribosomal protein L30p/L7e AMD15_RS05535 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMD15_RS05540 PF00344 SecY translocase AMD15_RS05545 PF00416 Ribosomal protein S13/S18 AMD15_RS05550 PF00411 Ribosomal protein S11 AMD15_RS05555 PF00163 Ribosomal protein S4/S9 N-terminal domain AMD15_RS05555 PF01479 S4 domain AMD15_RS05560 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMD15_RS05560 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMD15_RS05560 PF01000 RNA polymerase Rpb3/RpoA insert domain AMD15_RS05565 PF01196 Ribosomal protein L17 AMD15_RS05570 PF02600 Disulfide bond formation protein DsbB AMD15_RS05585 PF01474 Class-II DAHP synthetase family AMD15_RS05595 PF01425 Amidase AMD15_RS05605 PF00679 Elongation factor G C-terminus AMD15_RS05605 PF03144 Elongation factor Tu domain 2 AMD15_RS05605 PF00009 Elongation factor Tu GTP binding domain AMD15_RS05610 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD15_RS05615 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD15_RS05615 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD15_RS05620 PF02798 Glutathione S-transferase, N-terminal domain AMD15_RS05620 PF00043 Glutathione S-transferase, C-terminal domain AMD15_RS05630 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS05630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD15_RS05635 PF00107 Zinc-binding dehydrogenase AMD15_RS05635 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS05645 PF05736 OprF membrane domain AMD15_RS05645 PF00691 OmpA family AMD15_RS05655 PF00849 RNA pseudouridylate synthase AMD15_RS05665 PF00155 Aminotransferase class I and II AMD15_RS05675 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS05680 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS05685 PF00005 ABC transporter AMD15_RS05685 PF12857 TOBE-like domain AMD15_RS05685 PF17850 CysA C-terminal regulatory domain AMD15_RS05695 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS05695 PF00107 Zinc-binding dehydrogenase AMD15_RS05710 PF05506 Domain of unknown function (DUF756) AMD15_RS05710 PF04185 Phosphoesterase family AMD15_RS05715 PF10459 Peptidase S46 AMD15_RS05720 PF10459 Peptidase S46 AMD15_RS05725 PF00300 Histidine phosphatase superfamily (branch 1) AMD15_RS05730 PF02875 Mur ligase family, glutamate ligase domain AMD15_RS05730 PF08245 Mur ligase middle domain AMD15_RS05745 PF00156 Phosphoribosyl transferase domain AMD15_RS05750 PF04305 Protein of unknown function (DUF455) AMD15_RS05770 PF00149 Calcineurin-like phosphoesterase AMD15_RS05775 PF01569 PAP2 superfamily AMD15_RS05780 PF00534 Glycosyl transferases group 1 AMD15_RS05780 PF13439 Glycosyltransferase Family 4 AMD15_RS05785 PF02541 Ppx/GppA phosphatase family AMD15_RS05790 PF17941 Polyphosphate kinase C-terminal domain 1 AMD15_RS05790 PF02503 Polyphosphate kinase middle domain AMD15_RS05790 PF13089 Polyphosphate kinase N-terminal domain AMD15_RS05790 PF13090 Polyphosphate kinase C-terminal domain 2 AMD15_RS05795 PF11808 Phosphate regulon sensor protein PhoR AMD15_RS05795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS05795 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS05795 PF00989 PAS fold AMD15_RS05800 PF00072 Response regulator receiver domain AMD15_RS05800 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS05805 PF13181 Tetratricopeptide repeat AMD15_RS05805 PF01435 Peptidase family M48 AMD15_RS05810 PF00462 Glutaredoxin AMD15_RS05820 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD15_RS05950 PF13276 HTH-like domain AMD15_RS05950 PF13333 Integrase core domain AMD15_RS05950 PF00665 Integrase core domain AMD15_RS05965 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS05965 PF00989 PAS fold AMD15_RS05965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS05975 PF05698 Bacterial trigger factor protein (TF) C-terminus AMD15_RS05975 PF05697 Bacterial trigger factor protein (TF) AMD15_RS05980 PF00574 Clp protease AMD15_RS05985 PF06689 ClpX C4-type zinc finger AMD15_RS05985 PF10431 C-terminal, D2-small domain, of ClpB protein AMD15_RS05985 PF07724 AAA domain (Cdc48 subfamily) AMD15_RS05990 PF00004 ATPase family associated with various cellular activities (AAA) AMD15_RS05990 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMD15_RS05990 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD15_RS05995 PF00216 Bacterial DNA-binding protein AMD15_RS06020 PF05257 CHAP domain AMD15_RS06020 PF01476 LysM domain AMD15_RS06025 PF00753 Metallo-beta-lactamase superfamily AMD15_RS06025 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD15_RS06035 PF00075 RNase H AMD15_RS06040 PF00929 Exonuclease AMD15_RS06060 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMD15_RS06070 PF12706 Beta-lactamase superfamily domain AMD15_RS06070 PF00753 Metallo-beta-lactamase superfamily AMD15_RS06075 PF04055 Radical SAM superfamily AMD15_RS06075 PF06463 Molybdenum Cofactor Synthesis C AMD15_RS06085 PF01967 MoaC family AMD15_RS06090 PF02597 ThiS family AMD15_RS06095 PF02391 MoaE protein AMD15_RS06145 PF12169 DNA polymerase III subunits gamma and tau domain III AMD15_RS06145 PF12170 DNA polymerase III tau subunit V interacting with alpha AMD15_RS06145 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMD15_RS06150 PF02575 YbaB/EbfC DNA-binding family AMD15_RS06155 PF13662 Toprim domain AMD15_RS06155 PF02132 RecR protein AMD15_RS06160 PF01230 HIT domain AMD15_RS06170 PF01841 Transglutaminase-like superfamily AMD15_RS06170 PF13559 Domain of unknown function (DUF4129) AMD15_RS06170 PF11992 Domain of unknown function (DUF3488) AMD15_RS06180 PF17863 AAA lid domain AMD15_RS06180 PF07726 ATPase family associated with various cellular activities (AAA) AMD15_RS06200 PF02545 Maf-like protein AMD15_RS06205 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMD15_RS06210 PF01783 Ribosomal L32p protein family AMD15_RS06215 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD15_RS06215 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD15_RS06225 PF00698 Acyl transferase domain AMD15_RS06235 PF00550 Phosphopantetheine attachment site AMD15_RS06240 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD15_RS06240 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD15_RS06245 PF00425 chorismate binding enzyme AMD15_RS06245 PF04715 Anthranilate synthase component I, N terminal region AMD15_RS06250 PF02618 YceG-like family AMD15_RS06255 PF09115 DNA polymerase III, delta subunit, C terminal AMD15_RS06275 PF02954 Bacterial regulatory protein, Fis family AMD15_RS06275 PF06506 Propionate catabolism activator AMD15_RS06275 PF00158 Sigma-54 interaction domain AMD15_RS06285 PF00285 Citrate synthase, C-terminal domain AMD15_RS06290 PF00330 Aconitase family (aconitate hydratase) AMD15_RS06290 PF00694 Aconitase C-terminal domain AMD15_RS06295 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AMD15_RS06300 PF04303 PrpF protein AMD15_RS06305 PF00593 TonB dependent receptor AMD15_RS06305 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS06315 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AMD15_RS06315 PF17962 Bacterial macroglobulin domain 6 AMD15_RS06315 PF00207 Alpha-2-macroglobulin family AMD15_RS06315 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AMD15_RS06315 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AMD15_RS06315 PF01835 MG2 domain AMD15_RS06315 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AMD15_RS06315 PF07703 Alpha-2-macroglobulin bait region domain AMD15_RS06330 PF00905 Penicillin binding protein transpeptidase domain AMD15_RS06330 PF00912 Transglycosylase AMD15_RS06330 PF06832 Penicillin-Binding Protein C-terminus Family AMD15_RS06340 PF08534 Redoxin AMD15_RS06350 PF00226 DnaJ domain AMD15_RS06350 PF01556 DnaJ C terminal domain AMD15_RS06355 PF00072 Response regulator receiver domain AMD15_RS06360 PF12221 Bacterial membrane protein N terminal AMD15_RS06360 PF01145 SPFH domain / Band 7 family AMD15_RS06365 PF01145 SPFH domain / Band 7 family AMD15_RS06375 PF00709 Adenylosuccinate synthetase AMD15_RS06380 PF01433 Peptidase family M1 domain AMD15_RS06380 PF11838 ERAP1-like C-terminal domain AMD15_RS06395 PF00440 Bacterial regulatory proteins, tetR family AMD15_RS06460 PF13456 Reverse transcriptase-like AMD15_RS06460 PF00300 Histidine phosphatase superfamily (branch 1) AMD15_RS06465 PF01256 Carbohydrate kinase AMD15_RS06475 PF00723 Glycosyl hydrolases family 15 AMD15_RS06485 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD15_RS06485 PF07971 Glycosyl hydrolase family 92 AMD15_RS06505 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS06525 PF17755 UvrA DNA-binding domain AMD15_RS06530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD15_RS06530 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD15_RS06535 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD15_RS06535 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD15_RS06540 PF01799 [2Fe-2S] binding domain AMD15_RS06540 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD15_RS06575 PF01726 LexA DNA binding domain AMD15_RS06575 PF00717 Peptidase S24-like AMD15_RS06590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD15_RS06590 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD15_RS06590 PF14579 Helix-hairpin-helix motif AMD15_RS06590 PF02811 PHP domain AMD15_RS06595 PF00326 Prolyl oligopeptidase family AMD15_RS06605 PF03169 OPT oligopeptide transporter protein AMD15_RS06620 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD15_RS06620 PF00326 Prolyl oligopeptidase family AMD15_RS06620 PF07676 WD40-like Beta Propeller Repeat AMD15_RS06635 PF12833 Helix-turn-helix domain AMD15_RS06635 PF02311 AraC-like ligand binding domain AMD15_RS06650 PF18011 C-terminal domain found in long catalases AMD15_RS06650 PF06628 Catalase-related immune-responsive AMD15_RS06650 PF00199 Catalase AMD15_RS06655 PF00248 Aldo/keto reductase family AMD15_RS06660 PF00135 Carboxylesterase family AMD15_RS06665 PF02347 Glycine cleavage system P-protein AMD15_RS06670 PF07690 Major Facilitator Superfamily AMD15_RS06685 PF08019 Phosphoethanolamine transferase EptA/EptB AMD15_RS06685 PF00884 Sulfatase AMD15_RS06700 PF00072 Response regulator receiver domain AMD15_RS06700 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS06705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS06705 PF08521 Two-component sensor kinase N-terminal AMD15_RS06705 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS06715 PF03776 Septum formation topological specificity factor MinE AMD15_RS06720 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD15_RS06725 PF05209 Septum formation inhibitor MinC, N-terminal domain AMD15_RS06725 PF03775 Septum formation inhibitor MinC, C-terminal domain AMD15_RS06735 PF07730 Histidine kinase AMD15_RS06740 PF00072 Response regulator receiver domain AMD15_RS06740 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS06755 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD15_RS06780 PF02222 ATP-grasp domain AMD15_RS06790 PF04377 Arginine-tRNA-protein transferase, C terminus AMD15_RS06790 PF04376 Arginine-tRNA-protein transferase, N terminus AMD15_RS06815 PF00378 Enoyl-CoA hydratase/isomerase AMD15_RS06830 PF17755 UvrA DNA-binding domain AMD15_RS06830 PF17760 UvrA interaction domain AMD15_RS06830 PF00005 ABC transporter AMD15_RS06835 PF00829 Ribosomal prokaryotic L21 protein AMD15_RS06840 PF01016 Ribosomal L27 protein AMD15_RS06845 PF01018 GTP1/OBG AMD15_RS06845 PF01926 50S ribosome-binding GTPase AMD15_RS06850 PF01649 Ribosomal protein S20 AMD15_RS06855 PF03023 Lipid II flippase MurJ AMD15_RS06860 PF06574 FAD synthetase AMD15_RS06860 PF01687 Riboflavin kinase AMD15_RS06865 PF08264 Anticodon-binding domain of tRNA AMD15_RS06865 PF06827 Zinc finger found in FPG and IleRS AMD15_RS06865 PF00133 tRNA synthetases class I (I, L, M and V) AMD15_RS06870 PF01252 Signal peptidase (SPase) II AMD15_RS06875 PF02401 LytB protein AMD15_RS06885 PF06481 COX Aromatic Rich Motif AMD15_RS06885 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD15_RS06890 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD15_RS06895 PF00510 Cytochrome c oxidase subunit III AMD15_RS06900 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMD15_RS06910 PF18073 Rubredoxin metal binding domain AMD15_RS06915 PF05656 Protein of unknown function (DUF805) AMD15_RS06925 PF12833 Helix-turn-helix domain AMD15_RS06930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS06930 PF00183 Hsp90 protein AMD15_RS06940 PF08678 Rsbr N terminal AMD15_RS06940 PF01740 STAS domain AMD15_RS06945 PF01740 STAS domain AMD15_RS06950 PF13581 Histidine kinase-like ATPase domain AMD15_RS06960 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD15_RS06960 PF00072 Response regulator receiver domain AMD15_RS06960 PF00672 HAMP domain AMD15_RS06960 PF01627 Hpt domain AMD15_RS06960 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS06960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS06965 PF08448 PAS fold AMD15_RS06965 PF00072 Response regulator receiver domain AMD15_RS06965 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS06965 PF13188 PAS domain AMD15_RS06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS06970 PF04616 Glycosyl hydrolases family 43 AMD15_RS06970 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD15_RS06975 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS06975 PF00593 TonB dependent receptor AMD15_RS06980 PF00085 Thioredoxin AMD15_RS06985 PF07237 Protein of unknown function (DUF1428) AMD15_RS06990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS06990 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD15_RS06990 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS06990 PF13493 Domain of unknown function (DUF4118) AMD15_RS06990 PF13492 GAF domain AMD15_RS06995 PF01339 CheB methylesterase AMD15_RS07000 PF03705 CheR methyltransferase, all-alpha domain AMD15_RS07000 PF01739 CheR methyltransferase, SAM binding domain AMD15_RS07005 PF00672 HAMP domain AMD15_RS07005 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD15_RS07005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS07005 PF00072 Response regulator receiver domain AMD15_RS07005 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS07005 PF01627 Hpt domain AMD15_RS07010 PF00072 Response regulator receiver domain AMD15_RS07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS07010 PF13426 PAS domain AMD15_RS07015 PF00072 Response regulator receiver domain AMD15_RS07020 PF00722 Glycosyl hydrolases family 16 AMD15_RS07025 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMD15_RS07035 PF01263 Aldose 1-epimerase AMD15_RS07040 PF01578 Cytochrome C assembly protein AMD15_RS07045 PF02881 SRP54-type protein, helical bundle domain AMD15_RS07045 PF00448 SRP54-type protein, GTPase domain AMD15_RS07045 PF02978 Signal peptide binding domain AMD15_RS07050 PF03060 Nitronate monooxygenase AMD15_RS07055 PF01063 Amino-transferase class IV AMD15_RS07060 PF00886 Ribosomal protein S16 AMD15_RS07065 PF05239 PRC-barrel domain AMD15_RS07065 PF01782 RimM N-terminal domain AMD15_RS07070 PF01746 tRNA (Guanine-1)-methyltransferase AMD15_RS07075 PF01245 Ribosomal protein L19 AMD15_RS07100 PF01479 S4 domain AMD15_RS07105 PF00141 Peroxidase AMD15_RS07115 PF05188 MutS domain II AMD15_RS07115 PF01624 MutS domain I AMD15_RS07115 PF05192 MutS domain III AMD15_RS07115 PF05190 MutS family domain IV AMD15_RS07115 PF00488 MutS domain V AMD15_RS07125 PF03527 RHS protein AMD15_RS07125 PF05593 RHS Repeat AMD15_RS07145 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD15_RS07145 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD15_RS07145 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD15_RS07145 PF00703 Glycosyl hydrolases family 2 AMD15_RS07145 PF16355 Domain of unknown function (DUF4982) AMD15_RS07150 PF07745 Glycosyl hydrolase family 53 AMD15_RS07160 PF06114 IrrE N-terminal-like domain AMD15_RS07160 PF09856 Predicted transcriptional regulator (DUF2083) AMD15_RS07160 PF01381 Helix-turn-helix AMD15_RS07165 PF00171 Aldehyde dehydrogenase family AMD15_RS07170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD15_RS07170 PF02770 Acyl-CoA dehydrogenase, middle domain AMD15_RS07170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD15_RS07175 PF00378 Enoyl-CoA hydratase/isomerase AMD15_RS07180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD15_RS07180 PF00378 Enoyl-CoA hydratase/isomerase AMD15_RS07180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD15_RS07185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD15_RS07185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD15_RS07190 PF01545 Cation efflux family AMD15_RS07195 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD15_RS07195 PF00378 Enoyl-CoA hydratase/isomerase AMD15_RS07195 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD15_RS07200 PF04542 Sigma-70 region 2 AMD15_RS07200 PF08281 Sigma-70, region 4 AMD15_RS07210 PF13180 PDZ domain AMD15_RS07215 PF00009 Elongation factor Tu GTP binding domain AMD15_RS07215 PF00679 Elongation factor G C-terminus AMD15_RS07215 PF06421 GTP-binding protein LepA C-terminus AMD15_RS07215 PF03144 Elongation factor Tu domain 2 AMD15_RS07220 PF10502 Signal peptidase, peptidase S26 AMD15_RS07230 PF14622 Ribonuclease-III-like AMD15_RS07230 PF00035 Double-stranded RNA binding motif AMD15_RS07235 PF07650 KH domain AMD15_RS07235 PF01926 50S ribosome-binding GTPase AMD15_RS07240 PF02565 Recombination protein O C terminal AMD15_RS07240 PF11967 Recombination protein O N terminal AMD15_RS07250 PF05958 tRNA (Uracil-5-)-methyltransferase AMD15_RS07255 PF01928 CYTH domain AMD15_RS07260 PF01323 DSBA-like thioredoxin domain AMD15_RS07265 PF01593 Flavin containing amine oxidoreductase AMD15_RS07270 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMD15_RS07275 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD15_RS07280 PF00156 Phosphoribosyl transferase domain AMD15_RS07285 PF01048 Phosphorylase superfamily AMD15_RS07290 PF00313 'Cold-shock' DNA-binding domain AMD15_RS07295 PF01494 FAD binding domain AMD15_RS07305 PF00271 Helicase conserved C-terminal domain AMD15_RS07305 PF08494 DEAD/H associated AMD15_RS07305 PF00270 DEAD/DEAH box helicase AMD15_RS07310 PF04675 DNA ligase N terminus AMD15_RS07310 PF01068 ATP dependent DNA ligase domain AMD15_RS07310 PF04679 ATP dependent DNA ligase C terminal region AMD15_RS07320 PF04675 DNA ligase N terminus AMD15_RS07320 PF01068 ATP dependent DNA ligase domain AMD15_RS07320 PF04679 ATP dependent DNA ligase C terminal region AMD15_RS07335 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS07335 PF00072 Response regulator receiver domain AMD15_RS07350 PF00108 Thiolase, N-terminal domain AMD15_RS07350 PF02803 Thiolase, C-terminal domain AMD15_RS07355 PF03797 Autotransporter beta-domain AMD15_RS07355 PF00082 Subtilase family AMD15_RS07355 PF12951 Passenger-associated-transport-repeat AMD15_RS07360 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMD15_RS07360 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD15_RS07370 PF01863 Protein of unknown function DUF45 AMD15_RS07375 PF07043 Protein of unknown function (DUF1328) AMD15_RS07385 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD15_RS07410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD15_RS07420 PF08274 PhnA Zinc-Ribbon AMD15_RS07420 PF03831 PhnA domain AMD15_RS07425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD15_RS07430 PF07690 Major Facilitator Superfamily AMD15_RS07465 PF03706 Lysylphosphatidylglycerol synthase TM region AMD15_RS07465 PF09924 Uncharacterised conserved protein (DUF2156) AMD15_RS07475 PF01042 Endoribonuclease L-PSP AMD15_RS07520 PF04545 Sigma-70, region 4 AMD15_RS07520 PF04542 Sigma-70 region 2 AMD15_RS07540 PF04060 Putative Fe-S cluster AMD15_RS07550 PF09334 tRNA synthetases class I (M) AMD15_RS07550 PF01588 Putative tRNA binding domain AMD15_RS07565 PF13732 Domain of unknown function (DUF4162) AMD15_RS07565 PF00005 ABC transporter AMD15_RS07570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD15_RS07575 PF00324 Amino acid permease AMD15_RS07580 PF02574 Homocysteine S-methyltransferase AMD15_RS07590 PF02592 Putative vitamin uptake transporter AMD15_RS07610 PF03551 Transcriptional regulator PadR-like family AMD15_RS07630 PF03653 Uncharacterised protein family (UPF0093) AMD15_RS07645 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMD15_RS07650 PF14579 Helix-hairpin-helix motif AMD15_RS07650 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD15_RS07650 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD15_RS07650 PF02811 PHP domain AMD15_RS07650 PF01336 OB-fold nucleic acid binding domain AMD15_RS07655 PF01351 Ribonuclease HII AMD15_RS07660 PF02684 Lipid-A-disaccharide synthetase AMD15_RS07665 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMD15_RS07665 PF00132 Bacterial transferase hexapeptide (six repeats) AMD15_RS07670 PF07977 FabA-like domain AMD15_RS07675 PF00132 Bacterial transferase hexapeptide (six repeats) AMD15_RS07675 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMD15_RS07685 PF07244 Surface antigen variable number repeat AMD15_RS07685 PF01103 Surface antigen AMD15_RS07690 PF02163 Peptidase family M50 AMD15_RS07690 PF17820 PDZ domain AMD15_RS07695 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMD15_RS07695 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMD15_RS07695 PF13288 DXP reductoisomerase C-terminal domain AMD15_RS07705 PF01255 Putative undecaprenyl diphosphate synthase AMD15_RS07710 PF01765 Ribosome recycling factor AMD15_RS07715 PF00696 Amino acid kinase family AMD15_RS07720 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS07720 PF00072 Response regulator receiver domain AMD15_RS07725 PF00889 Elongation factor TS AMD15_RS07730 PF00318 Ribosomal protein S2 AMD15_RS07765 PF00557 Metallopeptidase family M24 AMD15_RS07770 PF08335 GlnD PII-uridylyltransferase AMD15_RS07770 PF01966 HD domain AMD15_RS07770 PF01909 Nucleotidyltransferase domain AMD15_RS07775 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMD15_RS07775 PF00132 Bacterial transferase hexapeptide (six repeats) AMD15_RS07775 PF14602 Hexapeptide repeat of succinyl-transferase AMD15_RS07780 PF03960 ArsC family AMD15_RS07785 PF07687 Peptidase dimerisation domain AMD15_RS07785 PF01546 Peptidase family M20/M25/M40 AMD15_RS07790 PF13537 Glutamine amidotransferase domain AMD15_RS07790 PF00733 Asparagine synthase AMD15_RS07800 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS07800 PF00593 TonB dependent receptor AMD15_RS07815 PF00210 Ferritin-like domain AMD15_RS07820 PF05724 Thiopurine S-methyltransferase (TPMT) AMD15_RS07830 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD15_RS07830 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD15_RS07845 PF02321 Outer membrane efflux protein AMD15_RS07850 PF00529 HlyD membrane-fusion protein of T1SS AMD15_RS07850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS07855 PF07690 Major Facilitator Superfamily AMD15_RS07865 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD15_RS07865 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD15_RS07865 PF14310 Fibronectin type III-like domain AMD15_RS07875 PF00854 POT family AMD15_RS07900 PF12802 MarR family AMD15_RS07905 PF01432 Peptidase family M3 AMD15_RS07910 PF00255 Glutathione peroxidase AMD15_RS07915 PF00970 Oxidoreductase FAD-binding domain AMD15_RS07915 PF00175 Oxidoreductase NAD-binding domain AMD15_RS07920 PF00005 ABC transporter AMD15_RS07925 PF05683 Fumarase C-terminus AMD15_RS07925 PF05681 Fumarate hydratase (Fumerase) AMD15_RS07935 PF00484 Carbonic anhydrase AMD15_RS07940 PF02253 Phospholipase A1 AMD15_RS07950 PF00313 'Cold-shock' DNA-binding domain AMD15_RS07965 PF00899 ThiF family AMD15_RS07970 PF01026 TatD related DNase AMD15_RS07985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD15_RS07985 PF02770 Acyl-CoA dehydrogenase, middle domain AMD15_RS07985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD15_RS07995 PF00043 Glutathione S-transferase, C-terminal domain AMD15_RS07995 PF02798 Glutathione S-transferase, N-terminal domain AMD15_RS08005 PF13537 Glutamine amidotransferase domain AMD15_RS08005 PF00733 Asparagine synthase AMD15_RS08010 PF03358 NADPH-dependent FMN reductase AMD15_RS08015 PF03796 DnaB-like helicase C terminal domain AMD15_RS08015 PF00772 DnaB-like helicase N terminal domain AMD15_RS08020 PF00875 DNA photolyase AMD15_RS08020 PF03441 FAD binding domain of DNA photolyase AMD15_RS08025 PF00691 OmpA family AMD15_RS08025 PF05736 OprF membrane domain AMD15_RS08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS08030 PF03466 LysR substrate binding domain AMD15_RS08045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS08045 PF00529 HlyD membrane-fusion protein of T1SS AMD15_RS08050 PF00873 AcrB/AcrD/AcrF family AMD15_RS08055 PF00106 short chain dehydrogenase AMD15_RS08060 PF02321 Outer membrane efflux protein AMD15_RS08065 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS08075 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS08140 PF01527 Transposase AMD15_RS08175 PF00082 Subtilase family AMD15_RS08180 PF01668 SmpB protein AMD15_RS08185 PF03364 Polyketide cyclase / dehydrase and lipid transport AMD15_RS08190 PF03658 RnfH family Ubiquitin AMD15_RS08195 PF04355 SmpA / OmlA family AMD15_RS08200 PF01475 Ferric uptake regulator family AMD15_RS08205 PF02463 RecF/RecN/SMC N terminal domain AMD15_RS08210 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMD15_RS08210 PF01628 HrcA protein C terminal domain AMD15_RS08215 PF01025 GrpE AMD15_RS08220 PF00012 Hsp70 protein AMD15_RS08225 PF00684 DnaJ central domain AMD15_RS08225 PF00226 DnaJ domain AMD15_RS08225 PF01556 DnaJ C terminal domain AMD15_RS08230 PF08543 Phosphomethylpyrimidine kinase AMD15_RS08255 PF03412 Peptidase C39 family AMD15_RS08255 PF00005 ABC transporter AMD15_RS08255 PF00664 ABC transporter transmembrane region AMD15_RS08260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS08260 PF03466 LysR substrate binding domain AMD15_RS08265 PF00005 ABC transporter AMD15_RS08265 PF00664 ABC transporter transmembrane region AMD15_RS08270 PF01205 Uncharacterized protein family UPF0029 AMD15_RS08275 PF03641 Possible lysine decarboxylase AMD15_RS08280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD15_RS08280 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS08285 PF00364 Biotin-requiring enzyme AMD15_RS08285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD15_RS08285 PF02817 e3 binding domain AMD15_RS08290 PF16078 2-oxoglutarate dehydrogenase N-terminus AMD15_RS08290 PF00676 Dehydrogenase E1 component AMD15_RS08290 PF16870 2-oxoglutarate dehydrogenase C-terminal AMD15_RS08290 PF02779 Transketolase, pyrimidine binding domain AMD15_RS08300 PF08007 Cupin superfamily protein AMD15_RS08310 PF08328 Adenylosuccinate lyase C-terminal AMD15_RS08310 PF00206 Lyase AMD15_RS08320 PF00571 CBS domain AMD15_RS08320 PF03471 Transporter associated domain AMD15_RS08320 PF01595 Cyclin M transmembrane N-terminal domain AMD15_RS08325 PF10415 Fumarase C C-terminus AMD15_RS08325 PF00206 Lyase AMD15_RS08350 PF00005 ABC transporter AMD15_RS08355 PF00392 Bacterial regulatory proteins, gntR family AMD15_RS08360 PF00255 Glutathione peroxidase AMD15_RS08365 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD15_RS08365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD15_RS08370 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD15_RS08370 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD15_RS08370 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD15_RS08375 PF04102 SlyX AMD15_RS08390 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS08395 PF07690 Major Facilitator Superfamily AMD15_RS08400 PF00294 pfkB family carbohydrate kinase AMD15_RS08410 PF02574 Homocysteine S-methyltransferase AMD15_RS08410 PF02310 B12 binding domain AMD15_RS08410 PF02607 B12 binding domain AMD15_RS08410 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMD15_RS08410 PF00809 Pterin binding enzyme AMD15_RS08415 PF02574 Homocysteine S-methyltransferase AMD15_RS08415 PF00809 Pterin binding enzyme AMD15_RS08420 PF01209 ubiE/COQ5 methyltransferase family AMD15_RS08425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD15_RS08425 PF02770 Acyl-CoA dehydrogenase, middle domain AMD15_RS08425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD15_RS08440 PF17876 Cold shock domain AMD15_RS08440 PF08206 Ribonuclease B OB domain AMD15_RS08440 PF00773 RNB domain AMD15_RS08440 PF00575 S1 RNA binding domain AMD15_RS08440 PF08461 Ribonuclease R winged-helix domain AMD15_RS08450 PF00588 SpoU rRNA Methylase family AMD15_RS08450 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD15_RS08455 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS08460 PF00929 Exonuclease AMD15_RS08470 PF01895 PhoU domain AMD15_RS08475 PF00005 ABC transporter AMD15_RS08480 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS08485 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS08490 PF12849 PBP superfamily domain AMD15_RS08495 PF12849 PBP superfamily domain AMD15_RS08510 PF00484 Carbonic anhydrase AMD15_RS08515 PF01740 STAS domain AMD15_RS08515 PF00916 Sulfate permease family AMD15_RS08520 PF10576 Iron-sulfur binding domain of endonuclease III AMD15_RS08520 PF00633 Helix-hairpin-helix motif AMD15_RS08520 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD15_RS08530 PF00378 Enoyl-CoA hydratase/isomerase AMD15_RS08535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD15_RS08535 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD15_RS08540 PF00293 NUDIX domain AMD15_RS08545 PF00581 Rhodanese-like domain AMD15_RS08575 PF12848 ABC transporter AMD15_RS08575 PF16326 ABC transporter C-terminal domain AMD15_RS08575 PF00005 ABC transporter AMD15_RS08580 PF10672 S-adenosylmethionine-dependent methyltransferase AMD15_RS08580 PF01170 Putative RNA methylase family UPF0020 AMD15_RS08580 PF02926 THUMP domain AMD15_RS08585 PF01513 ATP-NAD kinase AMD15_RS08610 PF00929 Exonuclease AMD15_RS08610 PF08411 Exonuclease C-terminal AMD15_RS08615 PF01494 FAD binding domain AMD15_RS08620 PF00266 Aminotransferase class-V AMD15_RS08630 PF06052 3-hydroxyanthranilic acid dioxygenase AMD15_RS08635 PF00484 Carbonic anhydrase AMD15_RS08680 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS08680 PF00072 Response regulator receiver domain AMD15_RS08695 PF04299 Putative FMN-binding domain AMD15_RS08715 PF00152 tRNA synthetases class II (D, K and N) AMD15_RS08715 PF01336 OB-fold nucleic acid binding domain AMD15_RS08720 PF01521 Iron-sulphur cluster biosynthesis AMD15_RS08725 PF01250 Ribosomal protein S6 AMD15_RS08730 PF01084 Ribosomal protein S18 AMD15_RS08735 PF03948 Ribosomal protein L9, C-terminal domain AMD15_RS08735 PF01281 Ribosomal protein L9, N-terminal domain AMD15_RS08740 PF02463 RecF/RecN/SMC N terminal domain AMD15_RS08745 PF04354 ZipA, C-terminal FtsZ-binding domain AMD15_RS08755 PF00155 Aminotransferase class I and II AMD15_RS08760 PF03120 NAD-dependent DNA ligase OB-fold domain AMD15_RS08760 PF00533 BRCA1 C Terminus (BRCT) domain AMD15_RS08760 PF01653 NAD-dependent DNA ligase adenylation domain AMD15_RS08760 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMD15_RS08760 PF12826 Helix-hairpin-helix motif AMD15_RS08765 PF00152 tRNA synthetases class II (D, K and N) AMD15_RS08775 PF01008 Initiation factor 2 subunit family AMD15_RS08780 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD15_RS08780 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD15_RS08785 PF13360 PQQ-like domain AMD15_RS08795 PF01175 Urocanase Rossmann-like domain AMD15_RS08795 PF17392 Urocanase C-terminal domain AMD15_RS08795 PF17391 Urocanase N-terminal domain AMD15_RS08805 PF00221 Aromatic amino acid lyase AMD15_RS08810 PF07969 Amidohydrolase family AMD15_RS08825 PF00392 Bacterial regulatory proteins, gntR family AMD15_RS08825 PF07702 UTRA domain AMD15_RS08855 PF01794 Ferric reductase like transmembrane component AMD15_RS08860 PF00174 Oxidoreductase molybdopterin binding domain AMD15_RS08865 PF00266 Aminotransferase class-V AMD15_RS08870 PF01817 Chorismate mutase type II AMD15_RS08870 PF01842 ACT domain AMD15_RS08870 PF00800 Prephenate dehydratase AMD15_RS08875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD15_RS08885 PF03544 Gram-negative bacterial TonB protein C-terminal AMD15_RS08890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD15_RS08890 PF02403 Seryl-tRNA synthetase N-terminal domain AMD15_RS08895 PF02525 Flavodoxin-like fold AMD15_RS08900 PF03466 LysR substrate binding domain AMD15_RS08900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS08915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS08915 PF00672 HAMP domain AMD15_RS08915 PF02203 Tar ligand binding domain homologue AMD15_RS08920 PF01494 FAD binding domain AMD15_RS08940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS08940 PF00072 Response regulator receiver domain AMD15_RS08940 PF13188 PAS domain AMD15_RS08940 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS08940 PF08448 PAS fold AMD15_RS08945 PF00072 Response regulator receiver domain AMD15_RS08945 PF00672 HAMP domain AMD15_RS08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS08945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD15_RS08945 PF01627 Hpt domain AMD15_RS08945 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS08950 PF06745 KaiC AMD15_RS08955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS08955 PF13426 PAS domain AMD15_RS08955 PF00072 Response regulator receiver domain AMD15_RS08965 PF03918 Cytochrome C biogenesis protein AMD15_RS08970 PF08534 Redoxin AMD15_RS08975 PF01578 Cytochrome C assembly protein AMD15_RS08975 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD15_RS08980 PF03100 CcmE AMD15_RS08990 PF01578 Cytochrome C assembly protein AMD15_RS08995 PF00082 Subtilase family AMD15_RS09005 PF08281 Sigma-70, region 4 AMD15_RS09005 PF04542 Sigma-70 region 2 AMD15_RS09020 PF00034 Cytochrome c AMD15_RS09035 PF05523 WxcM-like, C-terminal AMD15_RS09055 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD15_RS09060 PF01943 Polysaccharide biosynthesis protein AMD15_RS09065 PF00535 Glycosyl transferase family 2 AMD15_RS09080 PF08241 Methyltransferase domain AMD15_RS09100 PF13579 Glycosyl transferase 4-like domain AMD15_RS09100 PF00534 Glycosyl transferases group 1 AMD15_RS09115 PF00005 ABC transporter AMD15_RS09120 PF00005 ABC transporter AMD15_RS09120 PF00664 ABC transporter transmembrane region AMD15_RS09125 PF07690 Major Facilitator Superfamily AMD15_RS09130 PF00296 Luciferase-like monooxygenase AMD15_RS09145 PF00571 CBS domain AMD15_RS09145 PF03471 Transporter associated domain AMD15_RS09145 PF01595 Cyclin M transmembrane N-terminal domain AMD15_RS09155 PF01384 Phosphate transporter family AMD15_RS09170 PF00204 DNA gyrase B AMD15_RS09170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS09170 PF01751 Toprim domain AMD15_RS09170 PF00986 DNA gyrase B subunit, carboxyl terminus AMD15_RS09180 PF06418 CTP synthase N-terminus AMD15_RS09180 PF00117 Glutamine amidotransferase class-I AMD15_RS09185 PF00793 DAHP synthetase I family AMD15_RS09195 PF03952 Enolase, N-terminal domain AMD15_RS09195 PF00113 Enolase, C-terminal TIM barrel domain AMD15_RS09200 PF04977 Septum formation initiator AMD15_RS09205 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMD15_RS09210 PF02542 YgbB family AMD15_RS09215 PF01142 tRNA pseudouridine synthase D (TruD) AMD15_RS09220 PF01713 Smr domain AMD15_RS09225 PF01975 Survival protein SurE AMD15_RS09235 PF09335 SNARE associated Golgi protein AMD15_RS09240 PF01476 LysM domain AMD15_RS09240 PF01551 Peptidase family M23 AMD15_RS09245 PF04430 Protein of unknown function (DUF498/DUF598) AMD15_RS09250 PF01985 CRS1 / YhbY (CRM) domain AMD15_RS09255 PF01728 FtsJ-like methyltransferase AMD15_RS09260 PF00004 ATPase family associated with various cellular activities (AAA) AMD15_RS09260 PF17862 AAA+ lid domain AMD15_RS09260 PF06480 FtsH Extracellular AMD15_RS09260 PF01434 Peptidase family M41 AMD15_RS09265 PF00809 Pterin binding enzyme AMD15_RS09275 PF17209 Hfq protein AMD15_RS09280 PF01926 50S ribosome-binding GTPase AMD15_RS09280 PF13167 GTP-binding GTPase N-terminal AMD15_RS09280 PF16360 GTP-binding GTPase Middle Region AMD15_RS09285 PF02464 Competence-damaged protein AMD15_RS09290 PF03109 ABC1 family AMD15_RS09295 PF00717 Peptidase S24-like AMD15_RS09295 PF01726 LexA DNA binding domain AMD15_RS09300 PF00154 recA bacterial DNA recombination protein AMD15_RS09305 PF02631 RecX family AMD15_RS09310 PF02272 DHHA1 domain AMD15_RS09310 PF01411 tRNA synthetases class II (A) AMD15_RS09310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD15_RS09315 PF02599 Global regulator protein family AMD15_RS09325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS09325 PF08447 PAS fold AMD15_RS09325 PF13426 PAS domain AMD15_RS09330 PF02678 Pirin AMD15_RS09330 PF17954 Quercetinase C-terminal cupin domain AMD15_RS09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS09340 PF03466 LysR substrate binding domain AMD15_RS09365 PF02581 Thiamine monophosphate synthase AMD15_RS09365 PF08543 Phosphomethylpyrimidine kinase AMD15_RS09380 PF13638 PIN domain AMD15_RS09380 PF02562 PhoH-like protein AMD15_RS09385 PF00578 AhpC/TSA family AMD15_RS09400 PF00701 Dihydrodipicolinate synthetase family AMD15_RS09410 PF11953 Domain of unknown function (DUF3470) AMD15_RS09410 PF00037 4Fe-4S binding domain AMD15_RS09415 PF05035 2-keto-3-deoxy-galactonokinase AMD15_RS09420 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD15_RS09425 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD15_RS09425 PF13378 Enolase C-terminal domain-like AMD15_RS09430 PF01081 KDPG and KHG aldolase AMD15_RS09440 PF03466 LysR substrate binding domain AMD15_RS09440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS09455 PF00942 Cellulose binding domain AMD15_RS09455 PF03442 Carbohydrate binding domain X2 AMD15_RS09470 PF01055 Glycosyl hydrolases family 31 AMD15_RS09470 PF17137 Domain of unknown function (DUF5110) AMD15_RS09470 PF16338 Domain of unknown function (DUF4968) AMD15_RS09480 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD15_RS09480 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD15_RS09490 PF00083 Sugar (and other) transporter AMD15_RS09500 PF01520 N-acetylmuramoyl-L-alanine amidase AMD15_RS09505 PF02649 Type I GTP cyclohydrolase folE2 AMD15_RS09515 PF01743 Poly A polymerase head domain AMD15_RS09515 PF12626 Polymerase A arginine-rich C-terminus AMD15_RS09515 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD15_RS09520 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD15_RS09525 PF02548 Ketopantoate hydroxymethyltransferase AMD15_RS09530 PF02569 Pantoate-beta-alanine ligase AMD15_RS09535 PF02261 Aspartate decarboxylase AMD15_RS09540 PF00342 Phosphoglucose isomerase AMD15_RS09560 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD15_RS09560 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD15_RS09560 PF14310 Fibronectin type III-like domain AMD15_RS09565 PF00474 Sodium:solute symporter family AMD15_RS09570 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS09570 PF01590 GAF domain AMD15_RS09570 PF00563 EAL domain AMD15_RS09570 PF00360 Phytochrome region AMD15_RS09575 PF02013 Cellulose or protein binding domain AMD15_RS09575 PF00150 Cellulase (glycosyl hydrolase family 5) AMD15_RS09580 PF00072 Response regulator receiver domain AMD15_RS09590 PF04551 GcpE protein AMD15_RS09595 PF01569 PAP2 superfamily AMD15_RS09600 PF07690 Major Facilitator Superfamily AMD15_RS09605 PF01177 Asp/Glu/Hydantoin racemase AMD15_RS09610 PF00892 EamA-like transporter family AMD15_RS09615 PF01565 FAD binding domain AMD15_RS09615 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMD15_RS09620 PF01180 Dihydroorotate dehydrogenase AMD15_RS09635 PF00171 Aldehyde dehydrogenase family AMD15_RS09650 PF00535 Glycosyl transferase family 2 AMD15_RS09655 PF14883 Hypothetical glycosyl hydrolase family 13 AMD15_RS09655 PF01522 Polysaccharide deacetylase AMD15_RS09665 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD15_RS09665 PF17287 POTRA domain AMD15_RS09665 PF08479 POTRA domain, ShlB-type AMD15_RS09670 PF05594 Haemagluttinin repeat AMD15_RS09670 PF04829 Pre-toxin domain with VENN motif AMD15_RS09670 PF13332 Hemagglutinin repeat AMD15_RS09675 PF13332 Hemagglutinin repeat AMD15_RS09675 PF04829 Pre-toxin domain with VENN motif AMD15_RS09675 PF05594 Haemagluttinin repeat AMD15_RS09680 PF05594 Haemagluttinin repeat AMD15_RS09680 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain AMD15_RS09680 PF13018 Extended Signal Peptide of Type V secretion system AMD15_RS09680 PF05860 haemagglutination activity domain AMD15_RS09680 PF13332 Hemagglutinin repeat AMD15_RS09690 PF00696 Amino acid kinase family AMD15_RS09690 PF01842 ACT domain AMD15_RS09690 PF03447 Homoserine dehydrogenase, NAD binding domain AMD15_RS09690 PF13840 ACT domain AMD15_RS09690 PF00742 Homoserine dehydrogenase AMD15_RS09695 PF00288 GHMP kinases N terminal domain AMD15_RS09695 PF08544 GHMP kinases C terminal AMD15_RS09705 PF00291 Pyridoxal-phosphate dependent enzyme AMD15_RS09705 PF14821 Threonine synthase N terminus AMD15_RS09715 PF13545 Crp-like helix-turn-helix domain AMD15_RS09715 PF00027 Cyclic nucleotide-binding domain AMD15_RS09720 PF03129 Anticodon binding domain AMD15_RS09720 PF13393 Histidyl-tRNA synthetase AMD15_RS09730 PF01634 ATP phosphoribosyltransferase AMD15_RS09730 PF08029 HisG, C-terminal domain AMD15_RS09735 PF00815 Histidinol dehydrogenase AMD15_RS09740 PF00155 Aminotransferase class I and II AMD15_RS09745 PF00475 Imidazoleglycerol-phosphate dehydratase AMD15_RS09750 PF00117 Glutamine amidotransferase class-I AMD15_RS09755 PF00977 Histidine biosynthesis protein AMD15_RS09760 PF00977 Histidine biosynthesis protein AMD15_RS09765 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMD15_RS09765 PF01502 Phosphoribosyl-AMP cyclohydrolase AMD15_RS09785 PF03079 ARD/ARD' family AMD15_RS09790 PF00596 Class II Aldolase and Adducin N-terminal domain AMD15_RS09795 PF13520 Amino acid permease AMD15_RS09800 PF13520 Amino acid permease AMD15_RS09810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD15_RS09810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD15_RS09810 PF01842 ACT domain AMD15_RS09815 PF02913 FAD linked oxidases, C-terminal domain AMD15_RS09815 PF01565 FAD binding domain AMD15_RS09835 PF01132 Elongation factor P (EF-P) OB domain AMD15_RS09835 PF09285 Elongation factor P, C-terminal AMD15_RS09835 PF08207 Elongation factor P (EF-P) KOW-like domain AMD15_RS09840 PF00106 short chain dehydrogenase AMD15_RS09845 PF00682 HMGL-like AMD15_RS09855 PF00378 Enoyl-CoA hydratase/isomerase AMD15_RS09865 PF07664 Ferrous iron transport protein B C terminus AMD15_RS09865 PF07670 Nucleoside recognition AMD15_RS09865 PF02421 Ferrous iron transport protein B AMD15_RS09880 PF00155 Aminotransferase class I and II AMD15_RS09885 PF03475 3-alpha domain AMD15_RS09885 PF03473 MOSC domain AMD15_RS09890 PF01113 Dihydrodipicolinate reductase, N-terminus AMD15_RS09890 PF05173 Dihydrodipicolinate reductase, C-terminus AMD15_RS09895 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD15_RS09895 PF00117 Glutamine amidotransferase class-I AMD15_RS09905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD15_RS09905 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD15_RS09905 PF02142 MGS-like domain AMD15_RS09910 PF03449 Transcription elongation factor, N-terminal AMD15_RS09910 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD15_RS09920 PF17768 RecJ OB domain AMD15_RS09920 PF02272 DHHA1 domain AMD15_RS09920 PF01368 DHH family AMD15_RS09965 PF00072 Response regulator receiver domain AMD15_RS09965 PF04397 LytTr DNA-binding domain AMD15_RS09970 PF00472 RF-1 domain AMD15_RS09970 PF03462 PCRF domain AMD15_RS09975 PF01336 OB-fold nucleic acid binding domain AMD15_RS09975 PF00152 tRNA synthetases class II (D, K and N) AMD15_RS09980 PF00072 Response regulator receiver domain AMD15_RS09985 PF00072 Response regulator receiver domain AMD15_RS09985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS09985 PF01627 Hpt domain AMD15_RS09985 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS09990 PF00378 Enoyl-CoA hydratase/isomerase AMD15_RS09995 PF13193 AMP-binding enzyme C-terminal domain AMD15_RS09995 PF00501 AMP-binding enzyme AMD15_RS10005 PF00330 Aconitase family (aconitate hydratase) AMD15_RS10005 PF00694 Aconitase C-terminal domain AMD15_RS10020 PF06434 Aconitate hydratase 2 N-terminus AMD15_RS10020 PF11791 Aconitate B N-terminal domain AMD15_RS10020 PF00330 Aconitase family (aconitate hydratase) AMD15_RS10025 PF00561 alpha/beta hydrolase fold AMD15_RS10030 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS10030 PF00563 EAL domain AMD15_RS10030 PF03707 Bacterial signalling protein N terminal repeat AMD15_RS10035 PF00072 Response regulator receiver domain AMD15_RS10035 PF01339 CheB methylesterase AMD15_RS10040 PF03975 CheD chemotactic sensory transduction AMD15_RS10045 PF03705 CheR methyltransferase, all-alpha domain AMD15_RS10045 PF01739 CheR methyltransferase, SAM binding domain AMD15_RS10050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10050 PF02203 Tar ligand binding domain homologue AMD15_RS10050 PF00672 HAMP domain AMD15_RS10055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10055 PF00672 HAMP domain AMD15_RS10055 PF02203 Tar ligand binding domain homologue AMD15_RS10060 PF02203 Tar ligand binding domain homologue AMD15_RS10060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10060 PF00672 HAMP domain AMD15_RS10070 PF00672 HAMP domain AMD15_RS10070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10070 PF02203 Tar ligand binding domain homologue AMD15_RS10075 PF00672 HAMP domain AMD15_RS10075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10075 PF02203 Tar ligand binding domain homologue AMD15_RS10080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10080 PF00672 HAMP domain AMD15_RS10085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10085 PF00672 HAMP domain AMD15_RS10085 PF02203 Tar ligand binding domain homologue AMD15_RS10100 PF02203 Tar ligand binding domain homologue AMD15_RS10100 PF00672 HAMP domain AMD15_RS10100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10105 PF08269 Cache domain AMD15_RS10105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10115 PF00672 HAMP domain AMD15_RS10115 PF02203 Tar ligand binding domain homologue AMD15_RS10115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS10120 PF01627 Hpt domain AMD15_RS10120 PF01584 CheW-like domain AMD15_RS10120 PF09078 CheY binding AMD15_RS10120 PF02895 Signal transducing histidine kinase, homodimeric domain AMD15_RS10125 PF00072 Response regulator receiver domain AMD15_RS10135 PF01584 CheW-like domain AMD15_RS10140 PF13614 AAA domain AMD15_RS10145 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD15_RS10145 PF00691 OmpA family AMD15_RS10150 PF01618 MotA/TolQ/ExbB proton channel family AMD15_RS10165 PF03793 PASTA domain AMD15_RS10165 PF00069 Protein kinase domain AMD15_RS10235 PF13186 Iron-sulfur cluster-binding domain AMD15_RS10235 PF04055 Radical SAM superfamily AMD15_RS10250 PF02895 Signal transducing histidine kinase, homodimeric domain AMD15_RS10250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS10250 PF01627 Hpt domain AMD15_RS10250 PF00072 Response regulator receiver domain AMD15_RS10250 PF01584 CheW-like domain AMD15_RS10255 PF04344 Chemotaxis phosphatase, CheZ AMD15_RS10260 PF00072 Response regulator receiver domain AMD15_RS10265 PF04545 Sigma-70, region 4 AMD15_RS10265 PF04542 Sigma-70 region 2 AMD15_RS10265 PF04539 Sigma-70 region 3 AMD15_RS10270 PF10609 NUBPL iron-transfer P-loop NTPase AMD15_RS10275 PF00448 SRP54-type protein, GTPase domain AMD15_RS10280 PF00771 FHIPEP family AMD15_RS10285 PF01312 FlhB HrpN YscU SpaS Family AMD15_RS10290 PF03707 Bacterial signalling protein N terminal repeat AMD15_RS10290 PF00563 EAL domain AMD15_RS10290 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS10295 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS10305 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS10310 PF01311 Bacterial export proteins, family 1 AMD15_RS10315 PF01313 Bacterial export proteins, family 3 AMD15_RS10320 PF00813 FliP family AMD15_RS10325 PF04347 Flagellar biosynthesis protein, FliO AMD15_RS10330 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD15_RS10335 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD15_RS10335 PF02154 Flagellar motor switch protein FliM AMD15_RS10355 PF18269 T3SS EscN ATPase C-terminal domain AMD15_RS10355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD15_RS10365 PF01706 FliG C-terminal domain AMD15_RS10365 PF14841 FliG middle domain AMD15_RS10365 PF14842 FliG N-terminal domain AMD15_RS10370 PF01514 Secretory protein of YscJ/FliF family AMD15_RS10370 PF08345 Flagellar M-ring protein C-terminal AMD15_RS10375 PF02049 Flagellar hook-basal body complex protein FliE AMD15_RS10380 PF00534 Glycosyl transferases group 1 AMD15_RS10380 PF00535 Glycosyl transferase family 2 AMD15_RS10415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD15_RS10415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD15_RS10425 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD15_RS10430 PF02954 Bacterial regulatory protein, Fis family AMD15_RS10430 PF00158 Sigma-54 interaction domain AMD15_RS10430 PF06490 Flagellar regulatory protein FleQ AMD15_RS10435 PF01339 CheB methylesterase AMD15_RS10435 PF00072 Response regulator receiver domain AMD15_RS10440 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD15_RS10440 PF04963 Sigma-54 factor, core binding domain AMD15_RS10440 PF04552 Sigma-54, DNA binding domain AMD15_RS10445 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS10445 PF00072 Response regulator receiver domain AMD15_RS10460 PF02561 Flagellar protein FliS AMD15_RS10465 PF02465 Flagellar hook-associated protein 2 N-terminus AMD15_RS10465 PF07195 Flagellar hook-associated protein 2 C-terminus AMD15_RS10465 PF07196 Flagellin hook IN motif AMD15_RS10470 PF00700 Bacterial flagellin C-terminal helical region AMD15_RS10470 PF00669 Bacterial flagellin N-terminal helical region AMD15_RS10475 PF00669 Bacterial flagellin N-terminal helical region AMD15_RS10475 PF00700 Bacterial flagellin C-terminal helical region AMD15_RS10480 PF07196 Flagellin hook IN motif AMD15_RS10480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD15_RS10485 PF10135 Rod binding protein AMD15_RS10485 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD15_RS10490 PF02119 Flagellar P-ring protein AMD15_RS10495 PF02107 Flagellar L-ring protein AMD15_RS10500 PF00460 Flagella basal body rod protein AMD15_RS10500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD15_RS10505 PF00460 Flagella basal body rod protein AMD15_RS10505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD15_RS10510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD15_RS10510 PF07559 Flagellar basal body protein FlaE AMD15_RS10510 PF00460 Flagella basal body rod protein AMD15_RS10515 PF03963 Flagellar hook capping protein - N-terminal region AMD15_RS10520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD15_RS10520 PF00460 Flagella basal body rod protein AMD15_RS10530 PF01584 CheW-like domain AMD15_RS10530 PF00072 Response regulator receiver domain AMD15_RS10550 PF13426 PAS domain AMD15_RS10550 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS10550 PF00989 PAS fold AMD15_RS10550 PF13188 PAS domain AMD15_RS10550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS10555 PF03707 Bacterial signalling protein N terminal repeat AMD15_RS10555 PF00563 EAL domain AMD15_RS10555 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS10560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS10560 PF07730 Histidine kinase AMD15_RS10565 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS10565 PF00563 EAL domain AMD15_RS10565 PF03707 Bacterial signalling protein N terminal repeat AMD15_RS10575 PF00672 HAMP domain AMD15_RS10575 PF12729 Four helix bundle sensory module for signal transduction AMD15_RS10575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS10580 PF04356 Protein of unknown function (DUF489) AMD15_RS10590 PF00293 NUDIX domain AMD15_RS10595 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMD15_RS10600 PF17871 AAA lid domain AMD15_RS10600 PF10431 C-terminal, D2-small domain, of ClpB protein AMD15_RS10600 PF02861 Clp amino terminal domain, pathogenicity island component AMD15_RS10600 PF07724 AAA domain (Cdc48 subfamily) AMD15_RS10600 PF00004 ATPase family associated with various cellular activities (AAA) AMD15_RS10605 PF01176 Translation initiation factor 1A / IF-1 AMD15_RS10610 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMD15_RS10620 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS10625 PF17854 FtsK alpha domain AMD15_RS10625 PF01580 FtsK/SpoIIIE family AMD15_RS10625 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMD15_RS10625 PF09397 Ftsk gamma domain AMD15_RS10635 PF03548 Outer membrane lipoprotein carrier protein LolA AMD15_RS10645 PF12002 MgsA AAA+ ATPase C terminal AMD15_RS10645 PF00004 ATPase family associated with various cellular activities (AAA) AMD15_RS10645 PF16193 AAA C-terminal domain AMD15_RS10650 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMD15_RS10660 PF00108 Thiolase, N-terminal domain AMD15_RS10660 PF02803 Thiolase, C-terminal domain AMD15_RS10665 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD15_RS10665 PF00378 Enoyl-CoA hydratase/isomerase AMD15_RS10665 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD15_RS10675 PF00334 Nucleoside diphosphate kinase AMD15_RS10680 PF04055 Radical SAM superfamily AMD15_RS10690 PF13464 Domain of unknown function (DUF4115) AMD15_RS10700 PF13360 PQQ-like domain AMD15_RS10700 PF01011 PQQ enzyme repeat AMD15_RS10705 PF01926 50S ribosome-binding GTPase AMD15_RS10705 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMD15_RS10710 PF03453 MoeA N-terminal region (domain I and II) AMD15_RS10710 PF03454 MoeA C-terminal region (domain IV) AMD15_RS10710 PF00994 Probable molybdopterin binding domain AMD15_RS10715 PF00899 ThiF family AMD15_RS10740 PF00107 Zinc-binding dehydrogenase AMD15_RS10740 PF13823 Alcohol dehydrogenase GroES-associated AMD15_RS10740 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS10750 PF03372 Endonuclease/Exonuclease/phosphatase family AMD15_RS10760 PF03454 MoeA C-terminal region (domain IV) AMD15_RS10760 PF00994 Probable molybdopterin binding domain AMD15_RS10760 PF03453 MoeA N-terminal region (domain I and II) AMD15_RS10765 PF12804 MobA-like NTP transferase domain AMD15_RS10775 PF00561 alpha/beta hydrolase fold AMD15_RS10780 PF01566 Natural resistance-associated macrophage protein AMD15_RS10785 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMD15_RS10785 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMD15_RS10790 PF14437 MafB19-like deaminase AMD15_RS10795 PF00929 Exonuclease AMD15_RS10800 PF00924 Mechanosensitive ion channel AMD15_RS10800 PF05552 Conserved TM helix AMD15_RS10805 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMD15_RS10805 PF00391 PEP-utilising enzyme, mobile domain AMD15_RS10805 PF02896 PEP-utilising enzyme, TIM barrel domain AMD15_RS10810 PF03618 Kinase/pyrophosphorylase AMD15_RS10830 PF01066 CDP-alcohol phosphatidyltransferase AMD15_RS10840 PF00561 alpha/beta hydrolase fold AMD15_RS10855 PF00355 Rieske [2Fe-2S] domain AMD15_RS10855 PF01266 FAD dependent oxidoreductase AMD15_RS10865 PF00575 S1 RNA binding domain AMD15_RS10865 PF16921 Tex protein YqgF-like domain AMD15_RS10865 PF17674 HHH domain AMD15_RS10865 PF09371 Tex-like protein N-terminal domain AMD15_RS10870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS10870 PF00072 Response regulator receiver domain AMD15_RS10870 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS10870 PF09308 LuxQ, periplasmic AMD15_RS10910 PF00034 Cytochrome c AMD15_RS10920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS10925 PF00873 AcrB/AcrD/AcrF family AMD15_RS10930 PF00873 AcrB/AcrD/AcrF family AMD15_RS10935 PF01081 KDPG and KHG aldolase AMD15_RS10940 PF00920 Dehydratase family AMD15_RS10945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMD15_RS10950 PF02685 Glucokinase AMD15_RS10955 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD15_RS10955 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD15_RS10960 PF17912 MalK OB fold domain AMD15_RS10960 PF00005 ABC transporter AMD15_RS10970 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD15_RS10975 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD15_RS10980 PF00890 FAD binding domain AMD15_RS10980 PF02910 Fumarate reductase flavoprotein C-term AMD15_RS10990 PF13085 2Fe-2S iron-sulfur cluster binding domain AMD15_RS10995 PF03937 Flavinator of succinate dehydrogenase AMD15_RS11005 PF02687 FtsX-like permease family AMD15_RS11005 PF12704 MacB-like periplasmic core domain AMD15_RS11010 PF00005 ABC transporter AMD15_RS11020 PF03772 Competence protein AMD15_RS11020 PF00753 Metallo-beta-lactamase superfamily AMD15_RS11025 PF01618 MotA/TolQ/ExbB proton channel family AMD15_RS11035 PF00005 ABC transporter AMD15_RS11035 PF00664 ABC transporter transmembrane region AMD15_RS11040 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMD15_RS11045 PF02348 Cytidylyltransferase AMD15_RS11050 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD15_RS11060 PF02151 UvrB/uvrC motif AMD15_RS11060 PF01541 GIY-YIG catalytic domain AMD15_RS11060 PF08459 UvrC Helix-hairpin-helix N-terminal AMD15_RS11065 PF01066 CDP-alcohol phosphatidyltransferase AMD15_RS11085 PF00550 Phosphopantetheine attachment site AMD15_RS11085 PF00668 Condensation domain AMD15_RS11085 PF13193 AMP-binding enzyme C-terminal domain AMD15_RS11085 PF00501 AMP-binding enzyme AMD15_RS11090 PF00975 Thioesterase domain AMD15_RS11090 PF13193 AMP-binding enzyme C-terminal domain AMD15_RS11090 PF00550 Phosphopantetheine attachment site AMD15_RS11090 PF00668 Condensation domain AMD15_RS11090 PF00501 AMP-binding enzyme AMD15_RS11100 PF01527 Transposase AMD15_RS11105 PF13333 Integrase core domain AMD15_RS11105 PF00665 Integrase core domain AMD15_RS11105 PF13276 HTH-like domain AMD15_RS11120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD15_RS11120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD15_RS11120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD15_RS11130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD15_RS11140 PF17773 UPF0176 acylphosphatase like domain AMD15_RS11140 PF00581 Rhodanese-like domain AMD15_RS11145 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS11145 PF00072 Response regulator receiver domain AMD15_RS11150 PF12111 Polyribonucleotide phosphorylase C terminal AMD15_RS11150 PF10150 Ribonuclease E/G family AMD15_RS11150 PF00575 S1 RNA binding domain AMD15_RS11155 PF01479 S4 domain AMD15_RS11155 PF00849 RNA pseudouridylate synthase AMD15_RS11160 PF11737 Protein of unknown function (DUF3300) AMD15_RS11165 PF02535 ZIP Zinc transporter AMD15_RS11175 PF01329 Pterin 4 alpha carbinolamine dehydratase AMD15_RS11180 PF01106 NifU-like domain AMD15_RS11225 PF12697 Alpha/beta hydrolase family AMD15_RS11225 PF08241 Methyltransferase domain AMD15_RS11235 PF00106 short chain dehydrogenase AMD15_RS11255 PF01494 FAD binding domain AMD15_RS11260 PF09335 SNARE associated Golgi protein AMD15_RS11270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD15_RS11280 PF07995 Glucose / Sorbosone dehydrogenase AMD15_RS11290 PF00144 Beta-lactamase AMD15_RS11295 PF04397 LytTr DNA-binding domain AMD15_RS11295 PF00072 Response regulator receiver domain AMD15_RS11300 PF06580 Histidine kinase AMD15_RS11300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS11300 PF07694 5TMR of 5TMR-LYT AMD15_RS11315 PF00082 Subtilase family AMD15_RS11315 PF03797 Autotransporter beta-domain AMD15_RS11320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS11325 PF00873 AcrB/AcrD/AcrF family AMD15_RS11335 PF00072 Response regulator receiver domain AMD15_RS11335 PF13426 PAS domain AMD15_RS11335 PF08448 PAS fold AMD15_RS11335 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS11335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS11340 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS11340 PF00072 Response regulator receiver domain AMD15_RS11345 PF12951 Passenger-associated-transport-repeat AMD15_RS11345 PF12951 Passenger-associated-transport-repeat AMD15_RS11350 PF00563 EAL domain AMD15_RS11350 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS11350 PF08448 PAS fold AMD15_RS11350 PF08447 PAS fold AMD15_RS11365 PF05974 Domain of unknown function (DUF892) AMD15_RS11380 PF10414 Sirohaem synthase dimerisation region AMD15_RS11380 PF14824 Sirohaem biosynthesis protein central AMD15_RS11380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD15_RS11395 PF05977 Transmembrane secretion effector AMD15_RS11405 PF07969 Amidohydrolase family AMD15_RS11415 PF00857 Isochorismatase family AMD15_RS11430 PF00072 Response regulator receiver domain AMD15_RS11430 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS11450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS11450 PF03466 LysR substrate binding domain AMD15_RS11455 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AMD15_RS11455 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD15_RS11455 PF00361 Proton-conducting membrane transporter AMD15_RS11460 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AMD15_RS11475 PF01381 Helix-turn-helix AMD15_RS11480 PF05284 Protein of unknown function (DUF736) AMD15_RS11485 PF04002 RadC-like JAB domain AMD15_RS11510 PF00589 Phage integrase family AMD15_RS11510 PF13356 Arm DNA-binding domain AMD15_RS11525 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS11525 PF00593 TonB dependent receptor AMD15_RS11540 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AMD15_RS11565 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS11565 PF00593 TonB dependent receptor AMD15_RS11575 PF10947 Protein of unknown function (DUF2628) AMD15_RS11585 PF00722 Glycosyl hydrolases family 16 AMD15_RS11585 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMD15_RS11605 PF00664 ABC transporter transmembrane region AMD15_RS11605 PF00005 ABC transporter AMD15_RS11605 PF03412 Peptidase C39 family AMD15_RS11615 PF13614 AAA domain AMD15_RS11655 PF01131 DNA topoisomerase AMD15_RS11655 PF01751 Toprim domain AMD15_RS11660 PF00145 C-5 cytosine-specific DNA methylase AMD15_RS11710 PF17761 DUF1016 N-terminal domain AMD15_RS11710 PF06250 YhcG PDDEXK nuclease domain AMD15_RS11730 PF00892 EamA-like transporter family AMD15_RS11735 PF00892 EamA-like transporter family AMD15_RS11745 PF02525 Flavodoxin-like fold AMD15_RS11750 PF02798 Glutathione S-transferase, N-terminal domain AMD15_RS11750 PF00043 Glutathione S-transferase, C-terminal domain AMD15_RS11755 PF05544 Proline racemase AMD15_RS11760 PF03358 NADPH-dependent FMN reductase AMD15_RS11770 PF07690 Major Facilitator Superfamily AMD15_RS11775 PF12833 Helix-turn-helix domain AMD15_RS11775 PF02311 AraC-like ligand binding domain AMD15_RS11925 PF12462 DNA helicase IV / RNA helicase N terminal AMD15_RS11925 PF13361 UvrD-like helicase C-terminal domain AMD15_RS11925 PF00580 UvrD/REP helicase N-terminal domain AMD15_RS12000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS12000 PF03466 LysR substrate binding domain AMD15_RS12005 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD15_RS12005 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD15_RS12010 PF03401 Tripartite tricarboxylate transporter family receptor AMD15_RS12025 PF04002 RadC-like JAB domain AMD15_RS12060 PF13356 Arm DNA-binding domain AMD15_RS12060 PF00589 Phage integrase family AMD15_RS12065 PF02540 NAD synthase AMD15_RS12065 PF00958 GMP synthase C terminal domain AMD15_RS12065 PF00117 Glutamine amidotransferase class-I AMD15_RS12070 PF00478 IMP dehydrogenase / GMP reductase domain AMD15_RS12070 PF00571 CBS domain AMD15_RS12075 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMD15_RS12075 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMD15_RS12085 PF00999 Sodium/hydrogen exchanger family AMD15_RS12085 PF02254 TrkA-N domain AMD15_RS12090 PF00483 Nucleotidyl transferase AMD15_RS12095 PF02719 Polysaccharide biosynthesis protein AMD15_RS12100 PF00953 Glycosyl transferase family 4 AMD15_RS12105 PF18073 Rubredoxin metal binding domain AMD15_RS12115 PF00216 Bacterial DNA-binding protein AMD15_RS12120 PF00575 S1 RNA binding domain AMD15_RS12125 PF02224 Cytidylate kinase AMD15_RS12130 PF00444 Ribosomal protein L36 AMD15_RS12140 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMD15_RS12145 PF00795 Carbon-nitrogen hydrolase AMD15_RS12170 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS12175 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS12195 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS12205 PF03795 YCII-related domain AMD15_RS12210 PF02616 Segregation and condensation protein ScpA AMD15_RS12215 PF04079 Segregation and condensation complex subunit ScpB AMD15_RS12220 PF01479 S4 domain AMD15_RS12220 PF00849 RNA pseudouridylate synthase AMD15_RS12235 PF00795 Carbon-nitrogen hydrolase AMD15_RS12240 PF00155 Aminotransferase class I and II AMD15_RS12245 PF00005 ABC transporter AMD15_RS12250 PF03379 CcmB protein AMD15_RS12255 PF01578 Cytochrome C assembly protein AMD15_RS12265 PF03100 CcmE AMD15_RS12270 PF01578 Cytochrome C assembly protein AMD15_RS12270 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD15_RS12275 PF08534 Redoxin AMD15_RS12280 PF03918 Cytochrome C biogenesis protein AMD15_RS12290 PF00561 alpha/beta hydrolase fold AMD15_RS12295 PF00313 'Cold-shock' DNA-binding domain AMD15_RS12300 PF00664 ABC transporter transmembrane region AMD15_RS12300 PF00005 ABC transporter AMD15_RS12305 PF00664 ABC transporter transmembrane region AMD15_RS12305 PF00005 ABC transporter AMD15_RS12310 PF01654 Cytochrome bd terminal oxidase subunit I AMD15_RS12315 PF02322 Cytochrome bd terminal oxidase subunit II AMD15_RS12335 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD15_RS12335 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD15_RS12340 PF00171 Aldehyde dehydrogenase family AMD15_RS12345 PF00696 Amino acid kinase family AMD15_RS12345 PF01472 PUA domain AMD15_RS12355 PF00206 Lyase AMD15_RS12360 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD15_RS12370 PF00696 Amino acid kinase family AMD15_RS12370 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase AMD15_RS12375 PF01546 Peptidase family M20/M25/M40 AMD15_RS12375 PF07687 Peptidase dimerisation domain AMD15_RS12385 PF00764 Arginosuccinate synthase AMD15_RS12390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD15_RS12390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD15_RS12400 PF09190 DALR domain AMD15_RS12400 PF01406 tRNA synthetases class I (C) catalytic domain AMD15_RS12405 PF02657 Fe-S metabolism associated domain AMD15_RS12415 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD15_RS12425 PF01809 Putative membrane protein insertion efficiency factor AMD15_RS12430 PF01979 Amidohydrolase family AMD15_RS12435 PF01551 Peptidase family M23 AMD15_RS12435 PF08460 Bacterial SH3 domain AMD15_RS12450 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMD15_RS12455 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AMD15_RS12465 PF00753 Metallo-beta-lactamase superfamily AMD15_RS12485 PF01527 Transposase AMD15_RS12490 PF00295 Glycosyl hydrolases family 28 AMD15_RS12500 PF13419 Haloacid dehalogenase-like hydrolase AMD15_RS12510 PF01979 Amidohydrolase family AMD15_RS12520 PF09285 Elongation factor P, C-terminal AMD15_RS12520 PF08207 Elongation factor P (EF-P) KOW-like domain AMD15_RS12520 PF01132 Elongation factor P (EF-P) OB domain AMD15_RS12525 PF04055 Radical SAM superfamily AMD15_RS12530 PF00563 EAL domain AMD15_RS12530 PF03707 Bacterial signalling protein N terminal repeat AMD15_RS12530 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS12530 PF13188 PAS domain AMD15_RS12540 PF00588 SpoU rRNA Methylase family AMD15_RS12545 PF00459 Inositol monophosphatase family AMD15_RS12550 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD15_RS12550 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD15_RS12555 PF00545 ribonuclease AMD15_RS12565 PF16326 ABC transporter C-terminal domain AMD15_RS12565 PF12848 ABC transporter AMD15_RS12565 PF00005 ABC transporter AMD15_RS12570 PF03880 DbpA RNA binding domain AMD15_RS12570 PF00270 DEAD/DEAH box helicase AMD15_RS12570 PF00271 Helicase conserved C-terminal domain AMD15_RS12575 PF00156 Phosphoribosyl transferase domain AMD15_RS12580 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMD15_RS12585 PF00135 Carboxylesterase family AMD15_RS12590 PF14497 Glutathione S-transferase, C-terminal domain AMD15_RS12590 PF02798 Glutathione S-transferase, N-terminal domain AMD15_RS12595 PF00313 'Cold-shock' DNA-binding domain AMD15_RS12600 PF07152 YaeQ protein AMD15_RS12610 PF00072 Response regulator receiver domain AMD15_RS12610 PF00563 EAL domain AMD15_RS12610 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS12615 PF01435 Peptidase family M48 AMD15_RS12620 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD15_RS12625 PF00106 short chain dehydrogenase AMD15_RS12630 PF05233 PHB accumulation regulatory domain AMD15_RS12630 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMD15_RS12645 PF08676 MutL C terminal dimerisation domain AMD15_RS12645 PF01119 DNA mismatch repair protein, C-terminal domain AMD15_RS12650 PF11741 AMIN domain AMD15_RS12650 PF01520 N-acetylmuramoyl-L-alanine amidase AMD15_RS12655 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMD15_RS12660 PF01256 Carbohydrate kinase AMD15_RS12660 PF03853 YjeF-related protein N-terminus AMD15_RS12665 PF08331 Domain of unknown function (DUF1730) AMD15_RS12670 PF02601 Exonuclease VII, large subunit AMD15_RS12670 PF13742 OB-fold nucleic acid binding domain AMD15_RS12680 PF03781 Sulfatase-modifying factor enzyme 1 AMD15_RS12685 PF00570 HRDC domain AMD15_RS12685 PF01612 3'-5' exonuclease AMD15_RS12690 PF13298 DNA polymerase Ligase (LigD) AMD15_RS12690 PF01068 ATP dependent DNA ligase domain AMD15_RS12690 PF04679 ATP dependent DNA ligase C terminal region AMD15_RS12710 PF00589 Phage integrase family AMD15_RS12735 PF05598 Transposase domain (DUF772) AMD15_RS12745 PF01527 Transposase AMD15_RS12765 PF14850 DNA-binding domain of Proline dehydrogenase AMD15_RS12765 PF01619 Proline dehydrogenase AMD15_RS12765 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD15_RS12765 PF00171 Aldehyde dehydrogenase family AMD15_RS12775 PF01527 Transposase AMD15_RS12780 PF00665 Integrase core domain AMD15_RS12780 PF13276 HTH-like domain AMD15_RS12780 PF13333 Integrase core domain AMD15_RS12785 PF00239 Resolvase, N terminal domain AMD15_RS12785 PF02796 Helix-turn-helix domain of resolvase AMD15_RS12800 PF02384 N-6 DNA Methylase AMD15_RS12805 PF09572 XamI restriction endonuclease AMD15_RS12860 PF01584 CheW-like domain AMD15_RS12865 PF02743 Cache domain AMD15_RS12865 PF00672 HAMP domain AMD15_RS12865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS12870 PF02245 Methylpurine-DNA glycosylase (MPG) AMD15_RS12875 PF00271 Helicase conserved C-terminal domain AMD15_RS12875 PF08494 DEAD/H associated AMD15_RS12875 PF00270 DEAD/DEAH box helicase AMD15_RS12890 PF04386 Stringent starvation protein B AMD15_RS12895 PF02798 Glutathione S-transferase, N-terminal domain AMD15_RS12895 PF00043 Glutathione S-transferase, C-terminal domain AMD15_RS12900 PF02167 Cytochrome C1 family AMD15_RS12905 PF00032 Cytochrome b(C-terminal)/b6/petD AMD15_RS12905 PF00033 Cytochrome b/b6/petB AMD15_RS12910 PF00355 Rieske [2Fe-2S] domain AMD15_RS12910 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMD15_RS12915 PF01464 Transglycosylase SLT domain AMD15_RS12930 PF04055 Radical SAM superfamily AMD15_RS12930 PF00919 Uncharacterized protein family UPF0004 AMD15_RS12930 PF01938 TRAM domain AMD15_RS12935 PF02562 PhoH-like protein AMD15_RS12945 PF02130 Uncharacterized protein family UPF0054 AMD15_RS12955 PF00571 CBS domain AMD15_RS12955 PF03471 Transporter associated domain AMD15_RS12970 PF00171 Aldehyde dehydrogenase family AMD15_RS12980 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS12985 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS12990 PF08402 TOBE domain AMD15_RS12990 PF00005 ABC transporter AMD15_RS12995 PF02321 Outer membrane efflux protein AMD15_RS13000 PF07690 Major Facilitator Superfamily AMD15_RS13005 PF13533 Biotin-lipoyl like AMD15_RS13010 PF13416 Bacterial extracellular solute-binding protein AMD15_RS13015 PF00202 Aminotransferase class-III AMD15_RS13020 PF00120 Glutamine synthetase, catalytic domain AMD15_RS13025 PF07722 Peptidase C26 AMD15_RS13030 PF00120 Glutamine synthetase, catalytic domain AMD15_RS13035 PF01266 FAD dependent oxidoreductase AMD15_RS13040 PF00072 Response regulator receiver domain AMD15_RS13040 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS13045 PF01814 Hemerythrin HHE cation binding domain AMD15_RS13050 PF00083 Sugar (and other) transporter AMD15_RS13050 PF07690 Major Facilitator Superfamily AMD15_RS13060 PF00384 Molybdopterin oxidoreductase AMD15_RS13065 PF02634 FdhD/NarQ family AMD15_RS13070 PF07690 Major Facilitator Superfamily AMD15_RS13075 PF00202 Aminotransferase class-III AMD15_RS13085 PF04286 Protein of unknown function (DUF445) AMD15_RS13090 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD15_RS13090 PF00072 Response regulator receiver domain AMD15_RS13090 PF01627 Hpt domain AMD15_RS13090 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS13090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS13090 PF00672 HAMP domain AMD15_RS13095 PF00072 Response regulator receiver domain AMD15_RS13100 PF07690 Major Facilitator Superfamily AMD15_RS13105 PF05088 Bacterial NAD-glutamate dehydrogenase AMD15_RS13115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS13115 PF00529 HlyD membrane-fusion protein of T1SS AMD15_RS13120 PF00873 AcrB/AcrD/AcrF family AMD15_RS13125 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS13130 PF00381 PTS HPr component phosphorylation site AMD15_RS13130 PF05524 PEP-utilising enzyme, N-terminal AMD15_RS13130 PF00391 PEP-utilising enzyme, mobile domain AMD15_RS13130 PF02896 PEP-utilising enzyme, TIM barrel domain AMD15_RS13130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD15_RS13135 PF00294 pfkB family carbohydrate kinase AMD15_RS13140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD15_RS13175 PF07549 SecD/SecF GG Motif AMD15_RS13175 PF02355 Protein export membrane protein AMD15_RS13180 PF02355 Protein export membrane protein AMD15_RS13180 PF07549 SecD/SecF GG Motif AMD15_RS13180 PF13721 SecD export protein N-terminal TM region AMD15_RS13185 PF02699 Preprotein translocase subunit AMD15_RS13190 PF01702 Queuine tRNA-ribosyltransferase AMD15_RS13195 PF02547 Queuosine biosynthesis protein AMD15_RS13240 PF02927 Cellulase N-terminal ig-like domain AMD15_RS13240 PF00759 Glycosyl hydrolase family 9 AMD15_RS13255 PF00037 4Fe-4S binding domain AMD15_RS13270 PF01467 Cytidylyltransferase-like AMD15_RS13280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS13280 PF00183 Hsp90 protein AMD15_RS13295 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS13295 PF00593 TonB dependent receptor AMD15_RS13305 PF04616 Glycosyl hydrolases family 43 AMD15_RS13310 PF07532 Bacterial Ig-like domain (group 4) AMD15_RS13315 PF00593 TonB dependent receptor AMD15_RS13315 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS13325 PF00082 Subtilase family AMD15_RS13325 PF09286 Pro-kumamolisin, activation domain AMD15_RS13350 PF13520 Amino acid permease AMD15_RS13365 PF01321 Creatinase/Prolidase N-terminal domain AMD15_RS13365 PF00557 Metallopeptidase family M24 AMD15_RS13370 PF00171 Aldehyde dehydrogenase family AMD15_RS13375 PF00701 Dihydrodipicolinate synthetase family AMD15_RS13380 PF04324 BFD-like [2Fe-2S] binding domain AMD15_RS13380 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS13390 PF01266 FAD dependent oxidoreductase AMD15_RS13395 PF05544 Proline racemase AMD15_RS13405 PF00448 SRP54-type protein, GTPase domain AMD15_RS13405 PF02881 SRP54-type protein, helical bundle domain AMD15_RS13410 PF14815 NUDIX domain AMD15_RS13410 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD15_RS13410 PF00633 Helix-hairpin-helix motif AMD15_RS13410 PF10576 Iron-sulfur binding domain of endonuclease III AMD15_RS13415 PF04362 Bacterial Fe(2+) trafficking AMD15_RS13420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS13420 PF00072 Response regulator receiver domain AMD15_RS13420 PF13426 PAS domain AMD15_RS13450 PF08212 Lipocalin-like domain AMD15_RS13460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD15_RS13460 PF02770 Acyl-CoA dehydrogenase, middle domain AMD15_RS13460 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMD15_RS13460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD15_RS13470 PF02780 Transketolase, C-terminal domain AMD15_RS13470 PF02779 Transketolase, pyrimidine binding domain AMD15_RS13470 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMD15_RS13490 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD15_RS13495 PF00753 Metallo-beta-lactamase superfamily AMD15_RS13495 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD15_RS13500 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD15_RS13500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD15_RS13515 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD15_RS13530 PF14667 Polysaccharide biosynthesis C-terminal domain AMD15_RS13540 PF00534 Glycosyl transferases group 1 AMD15_RS13540 PF13439 Glycosyltransferase Family 4 AMD15_RS13560 PF02397 Bacterial sugar transferase AMD15_RS13580 PF13411 MerR HTH family regulatory protein AMD15_RS13585 PF00216 Bacterial DNA-binding protein AMD15_RS13590 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMD15_RS13590 PF01588 Putative tRNA binding domain AMD15_RS13590 PF03483 B3/4 domain AMD15_RS13590 PF03147 Ferredoxin-fold anticodon binding domain AMD15_RS13590 PF03484 tRNA synthetase B5 domain AMD15_RS13595 PF01409 tRNA synthetases class II core domain (F) AMD15_RS13595 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMD15_RS13600 PF00453 Ribosomal protein L20 AMD15_RS13605 PF01632 Ribosomal protein L35 AMD15_RS13610 PF05198 Translation initiation factor IF-3, N-terminal domain AMD15_RS13610 PF00707 Translation initiation factor IF-3, C-terminal domain AMD15_RS13615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD15_RS13615 PF03129 Anticodon binding domain AMD15_RS13615 PF02824 TGS domain AMD15_RS13615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD15_RS13620 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS13625 PF00686 Starch binding domain AMD15_RS13625 PF00128 Alpha amylase, catalytic domain AMD15_RS13630 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMD15_RS13640 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD15_RS13640 PF14508 Glycosyl-hydrolase 97 N-terminal AMD15_RS13640 PF10566 Glycoside hydrolase 97 AMD15_RS13655 PF00128 Alpha amylase, catalytic domain AMD15_RS13660 PF01527 Transposase AMD15_RS13700 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AMD15_RS13715 PF01464 Transglycosylase SLT domain AMD15_RS13720 PF00437 Type II/IV secretion system protein AMD15_RS13725 PF03743 Bacterial conjugation TrbI-like protein AMD15_RS13745 PF02534 Type IV secretory system Conjugative DNA transfer AMD15_RS13760 PF12344 Ultra-violet resistance protein B AMD15_RS13760 PF17757 UvrB interaction domain AMD15_RS13760 PF02151 UvrB/uvrC motif AMD15_RS13760 PF04851 Type III restriction enzyme, res subunit AMD15_RS13760 PF00271 Helicase conserved C-terminal domain AMD15_RS13825 PF01555 DNA methylase AMD15_RS13875 PF00182 Chitinase class I AMD15_RS13940 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor AMD15_RS13940 PF07963 Prokaryotic N-terminal methylation motif AMD15_RS13945 PF05567 Neisseria PilC beta-propeller domain AMD15_RS13970 PF06580 Histidine kinase AMD15_RS13970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS13970 PF07694 5TMR of 5TMR-LYT AMD15_RS13975 PF03641 Possible lysine decarboxylase AMD15_RS13975 PF11892 Domain of unknown function (DUF3412) AMD15_RS13975 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AMD15_RS13980 PF00593 TonB dependent receptor AMD15_RS13985 PF01914 MarC family integral membrane protein AMD15_RS13995 PF00462 Glutaredoxin AMD15_RS14000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD15_RS14000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD15_RS14005 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMD15_RS14005 PF02222 ATP-grasp domain AMD15_RS14010 PF00731 AIR carboxylase AMD15_RS14020 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMD15_RS14020 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMD15_RS14030 PF01138 3' exoribonuclease family, domain 1 AMD15_RS14030 PF00013 KH domain AMD15_RS14030 PF00575 S1 RNA binding domain AMD15_RS14030 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMD15_RS14030 PF03725 3' exoribonuclease family, domain 2 AMD15_RS14035 PF00312 Ribosomal protein S15 AMD15_RS14040 PF09157 Pseudouridine synthase II TruB, C-terminal AMD15_RS14040 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMD15_RS14040 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMD15_RS14045 PF02033 Ribosome-binding factor A AMD15_RS14050 PF04760 Translation initiation factor IF-2, N-terminal region AMD15_RS14050 PF00009 Elongation factor Tu GTP binding domain AMD15_RS14050 PF08364 Bacterial translation initiation factor IF-2 associated region AMD15_RS14050 PF11987 Translation-initiation factor 2 AMD15_RS14055 PF00575 S1 RNA binding domain AMD15_RS14055 PF13184 NusA-like KH domain AMD15_RS14055 PF08529 NusA N-terminal domain AMD15_RS14060 PF02576 RimP N-terminal domain AMD15_RS14060 PF17384 RimP C-terminal SH3 domain AMD15_RS14070 PF00361 Proton-conducting membrane transporter AMD15_RS14075 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMD15_RS14075 PF00361 Proton-conducting membrane transporter AMD15_RS14080 PF00361 Proton-conducting membrane transporter AMD15_RS14080 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD15_RS14085 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD15_RS14090 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMD15_RS14095 PF12838 4Fe-4S dicluster domain AMD15_RS14100 PF00146 NADH dehydrogenase AMD15_RS14105 PF00384 Molybdopterin oxidoreductase AMD15_RS14105 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMD15_RS14105 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD15_RS14110 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD15_RS14110 PF10531 SLBB domain AMD15_RS14110 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMD15_RS14120 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMD15_RS14125 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMD15_RS14130 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMD15_RS14135 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMD15_RS14150 PF00121 Triosephosphate isomerase AMD15_RS14155 PF00106 short chain dehydrogenase AMD15_RS14170 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS14170 PF03707 Bacterial signalling protein N terminal repeat AMD15_RS14170 PF00563 EAL domain AMD15_RS14190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD15_RS14190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD15_RS14190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD15_RS14190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD15_RS14195 PF01039 Carboxyl transferase domain AMD15_RS14195 PF17848 Acetyl-coA carboxylase zinc finger domain AMD15_RS14200 PF00290 Tryptophan synthase alpha chain AMD15_RS14210 PF00291 Pyridoxal-phosphate dependent enzyme AMD15_RS14215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS14215 PF03466 LysR substrate binding domain AMD15_RS14220 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMD15_RS14225 PF01416 tRNA pseudouridine synthase AMD15_RS14245 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMD15_RS14245 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD15_RS14250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD15_RS14250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD15_RS14255 PF01264 Chorismate synthase AMD15_RS14260 PF05175 Methyltransferase small domain AMD15_RS14265 PF02630 SCO1/SenC AMD15_RS14270 PF02666 Phosphatidylserine decarboxylase AMD15_RS14280 PF05872 Bacterial protein of unknown function (DUF853) AMD15_RS14285 PF00293 NUDIX domain AMD15_RS14300 PF03449 Transcription elongation factor, N-terminal AMD15_RS14300 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD15_RS14305 PF18693 TRAM domain AMD15_RS14305 PF00919 Uncharacterized protein family UPF0004 AMD15_RS14305 PF04055 Radical SAM superfamily AMD15_RS14310 PF01738 Dienelactone hydrolase family AMD15_RS14330 PF00692 dUTPase AMD15_RS14335 PF10609 NUBPL iron-transfer P-loop NTPase AMD15_RS14340 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS14340 PF00593 TonB dependent receptor AMD15_RS14355 PF01431 Peptidase family M13 AMD15_RS14355 PF05649 Peptidase family M13 AMD15_RS14360 PF01431 Peptidase family M13 AMD15_RS14360 PF05649 Peptidase family M13 AMD15_RS14375 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD15_RS14380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD15_RS14380 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS14385 PF01266 FAD dependent oxidoreductase AMD15_RS14390 PF04235 Protein of unknown function (DUF418) AMD15_RS14395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD15_RS14400 PF00877 NlpC/P60 family AMD15_RS14405 PF00877 NlpC/P60 family AMD15_RS14420 PF00375 Sodium:dicarboxylate symporter family AMD15_RS14425 PF00245 Alkaline phosphatase AMD15_RS14430 PF09179 TilS substrate binding domain AMD15_RS14430 PF11734 TilS substrate C-terminal domain AMD15_RS14430 PF01171 PP-loop family AMD15_RS14435 PF02609 Exonuclease VII small subunit AMD15_RS14440 PF00348 Polyprenyl synthetase AMD15_RS14445 PF14521 Lysine-specific metallo-endopeptidase AMD15_RS14455 PF01523 Putative modulator of DNA gyrase AMD15_RS14460 PF04751 Protein of unknown function (DUF615) AMD15_RS14465 PF01523 Putative modulator of DNA gyrase AMD15_RS14475 PF13116 Protein of unknown function AMD15_RS14475 PF13502 AsmA-like C-terminal region AMD15_RS14480 PF00575 S1 RNA binding domain AMD15_RS14480 PF10150 Ribonuclease E/G family AMD15_RS14485 PF02545 Maf-like protein AMD15_RS14490 PF04402 Protein of unknown function (DUF541) AMD15_RS14505 PF02590 Predicted SPOUT methyltransferase AMD15_RS14520 PF01467 Cytidylyltransferase-like AMD15_RS14535 PF13603 Leucyl-tRNA synthetase, Domain 2 AMD15_RS14535 PF08264 Anticodon-binding domain of tRNA AMD15_RS14535 PF00133 tRNA synthetases class I (I, L, M and V) AMD15_RS14545 PF00085 Thioredoxin AMD15_RS14570 PF04070 Domain of unknown function (DUF378) AMD15_RS14575 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD15_RS14585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS14585 PF03466 LysR substrate binding domain AMD15_RS14615 PF00664 ABC transporter transmembrane region AMD15_RS14615 PF00005 ABC transporter AMD15_RS14625 PF00873 AcrB/AcrD/AcrF family AMD15_RS14640 PF02321 Outer membrane efflux protein AMD15_RS14645 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS14645 PF00072 Response regulator receiver domain AMD15_RS14650 PF00672 HAMP domain AMD15_RS14650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS14650 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS14655 PF00999 Sodium/hydrogen exchanger family AMD15_RS14660 PF00144 Beta-lactamase AMD15_RS14665 PF03737 Aldolase/RraA AMD15_RS14685 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS14690 PF01479 S4 domain AMD15_RS14690 PF00849 RNA pseudouridylate synthase AMD15_RS14695 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS14695 PF00563 EAL domain AMD15_RS14695 PF08448 PAS fold AMD15_RS14700 PF03880 DbpA RNA binding domain AMD15_RS14700 PF00270 DEAD/DEAH box helicase AMD15_RS14700 PF00271 Helicase conserved C-terminal domain AMD15_RS14750 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMD15_RS14750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD15_RS14760 PF00654 Voltage gated chloride channel AMD15_RS14765 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS14765 PF00107 Zinc-binding dehydrogenase AMD15_RS14780 PF00593 TonB dependent receptor AMD15_RS14780 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS14790 PF01483 Proprotein convertase P-domain AMD15_RS14790 PF00082 Subtilase family AMD15_RS14800 PF01483 Proprotein convertase P-domain AMD15_RS14800 PF00082 Subtilase family AMD15_RS14810 PF00248 Aldo/keto reductase family AMD15_RS14815 PF07690 Major Facilitator Superfamily AMD15_RS14820 PF03466 LysR substrate binding domain AMD15_RS14820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS14830 PF12833 Helix-turn-helix domain AMD15_RS14830 PF06719 AraC-type transcriptional regulator N-terminus AMD15_RS14840 PF00440 Bacterial regulatory proteins, tetR family AMD15_RS14840 PF16859 Tetracyclin repressor-like, C-terminal domain AMD15_RS14845 PF02321 Outer membrane efflux protein AMD15_RS14850 PF00873 AcrB/AcrD/AcrF family AMD15_RS14855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS14855 PF00529 HlyD membrane-fusion protein of T1SS AMD15_RS14865 PF01475 Ferric uptake regulator family AMD15_RS14870 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD15_RS14895 PF06123 Inner membrane protein CreD AMD15_RS14905 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS14905 PF00672 HAMP domain AMD15_RS14905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS14910 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS14910 PF00072 Response regulator receiver domain AMD15_RS14915 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMD15_RS14925 PF00271 Helicase conserved C-terminal domain AMD15_RS14925 PF03461 TRCF domain AMD15_RS14925 PF17757 UvrB interaction domain AMD15_RS14925 PF02559 CarD-like/TRCF domain AMD15_RS14925 PF00270 DEAD/DEAH box helicase AMD15_RS14960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS14960 PF01627 Hpt domain AMD15_RS14960 PF02895 Signal transducing histidine kinase, homodimeric domain AMD15_RS14960 PF09078 CheY binding AMD15_RS14960 PF01584 CheW-like domain AMD15_RS14965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS14965 PF02203 Tar ligand binding domain homologue AMD15_RS14965 PF00672 HAMP domain AMD15_RS14970 PF01584 CheW-like domain AMD15_RS14975 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS14975 PF00563 EAL domain AMD15_RS14975 PF13426 PAS domain AMD15_RS14980 PF03705 CheR methyltransferase, all-alpha domain AMD15_RS14980 PF01739 CheR methyltransferase, SAM binding domain AMD15_RS14985 PF01339 CheB methylesterase AMD15_RS14985 PF00072 Response regulator receiver domain AMD15_RS14990 PF13091 PLD-like domain AMD15_RS14995 PF05649 Peptidase family M13 AMD15_RS14995 PF01431 Peptidase family M13 AMD15_RS15005 PF00300 Histidine phosphatase superfamily (branch 1) AMD15_RS15010 PF04493 Endonuclease V AMD15_RS15020 PF05726 Pirin C-terminal cupin domain AMD15_RS15020 PF02678 Pirin AMD15_RS15035 PF02678 Pirin AMD15_RS15035 PF05726 Pirin C-terminal cupin domain AMD15_RS15040 PF02554 Carbon starvation protein CstA AMD15_RS15040 PF13722 5TM C-terminal transporter carbon starvation CstA AMD15_RS15045 PF04328 Selenoprotein, putative AMD15_RS15090 PF01527 Transposase AMD15_RS15100 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD15_RS15100 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD15_RS15105 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD15_RS15105 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD15_RS15110 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMD15_RS15110 PF01799 [2Fe-2S] binding domain AMD15_RS15110 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD15_RS15115 PF09277 Erythronolide synthase, docking AMD15_RS15115 PF16197 Ketoacyl-synthetase C-terminal extension AMD15_RS15115 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD15_RS15115 PF08990 Erythronolide synthase docking AMD15_RS15115 PF08659 KR domain AMD15_RS15115 PF00550 Phosphopantetheine attachment site AMD15_RS15115 PF14765 Polyketide synthase dehydratase AMD15_RS15115 PF00698 Acyl transferase domain AMD15_RS15115 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD15_RS15115 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS15120 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS15120 PF00563 EAL domain AMD15_RS15120 PF01590 GAF domain AMD15_RS15120 PF00360 Phytochrome region AMD15_RS15125 PF00436 Single-strand binding protein family AMD15_RS15130 PF00348 Polyprenyl synthetase AMD15_RS15140 PF08245 Mur ligase middle domain AMD15_RS15140 PF02875 Mur ligase family, glutamate ligase domain AMD15_RS15155 PF00696 Amino acid kinase family AMD15_RS15155 PF01842 ACT domain AMD15_RS15160 PF02567 Phenazine biosynthesis-like protein AMD15_RS15165 PF02567 Phenazine biosynthesis-like protein AMD15_RS15175 PF02566 OsmC-like protein AMD15_RS15180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD15_RS15180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD15_RS15185 PF03652 Holliday junction resolvase AMD15_RS15190 PF02622 Uncharacterized ACR, COG1678 AMD15_RS15200 PF00958 GMP synthase C terminal domain AMD15_RS15200 PF00117 Glutamine amidotransferase class-I AMD15_RS15200 PF03352 Methyladenine glycosylase AMD15_RS15200 PF13302 Acetyltransferase (GNAT) domain AMD15_RS15200 PF13673 Acetyltransferase (GNAT) domain AMD15_RS15210 PF03211 Pectate lyase AMD15_RS15215 PF00437 Type II/IV secretion system protein AMD15_RS15220 PF00437 Type II/IV secretion system protein AMD15_RS15225 PF01168 Alanine racemase, N-terminal domain AMD15_RS15230 PF03807 NADP oxidoreductase coenzyme F420-dependent AMD15_RS15230 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMD15_RS15240 PF01551 Peptidase family M23 AMD15_RS15260 PF01965 DJ-1/PfpI family AMD15_RS15270 PF02082 Transcriptional regulator AMD15_RS15275 PF01458 Uncharacterized protein family (UPF0051) AMD15_RS15280 PF00005 ABC transporter AMD15_RS15285 PF01458 Uncharacterized protein family (UPF0051) AMD15_RS15290 PF00266 Aminotransferase class-V AMD15_RS15300 PF00355 Rieske [2Fe-2S] domain AMD15_RS15305 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS15305 PF00593 TonB dependent receptor AMD15_RS15310 PF13640 2OG-Fe(II) oxygenase superfamily AMD15_RS15310 PF18331 PKHD-type hydroxylase C-terminal domain AMD15_RS15335 PF02424 ApbE family AMD15_RS15340 PF00667 FAD binding domain AMD15_RS15340 PF00258 Flavodoxin AMD15_RS15340 PF00175 Oxidoreductase NAD-binding domain AMD15_RS15360 PF01546 Peptidase family M20/M25/M40 AMD15_RS15360 PF07687 Peptidase dimerisation domain AMD15_RS15370 PF01636 Phosphotransferase enzyme family AMD15_RS15375 PF00483 Nucleotidyl transferase AMD15_RS15380 PF00308 Bacterial dnaA protein AMD15_RS15385 PF01594 AI-2E family transporter AMD15_RS15395 PF00586 AIR synthase related protein, N-terminal domain AMD15_RS15395 PF02769 AIR synthase related protein, C-terminal domain AMD15_RS15405 PF00551 Formyl transferase AMD15_RS15425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD15_RS15430 PF01722 BolA-like protein AMD15_RS15435 PF00571 CBS domain AMD15_RS15435 PF01380 SIS domain AMD15_RS15450 PF03968 OstA-like protein AMD15_RS15455 PF00005 ABC transporter AMD15_RS15460 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD15_RS15460 PF04963 Sigma-54 factor, core binding domain AMD15_RS15460 PF04552 Sigma-54, DNA binding domain AMD15_RS15465 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD15_RS15470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD15_RS15475 PF07475 HPr Serine kinase C-terminal domain AMD15_RS15475 PF02603 HPr Serine kinase N terminus AMD15_RS15480 PF03668 P-loop ATPase protein family AMD15_RS15490 PF00381 PTS HPr component phosphorylation site AMD15_RS15495 PF02896 PEP-utilising enzyme, TIM barrel domain AMD15_RS15495 PF00391 PEP-utilising enzyme, mobile domain AMD15_RS15495 PF05524 PEP-utilising enzyme, N-terminal AMD15_RS15500 PF00571 CBS domain AMD15_RS15500 PF03448 MgtE intracellular N domain AMD15_RS15500 PF01769 Divalent cation transporter AMD15_RS15505 PF00756 Putative esterase AMD15_RS15510 PF02322 Cytochrome bd terminal oxidase subunit II AMD15_RS15515 PF01654 Cytochrome bd terminal oxidase subunit I AMD15_RS15525 PF00324 Amino acid permease AMD15_RS15530 PF00544 Pectate lyase AMD15_RS15535 PF00561 alpha/beta hydrolase fold AMD15_RS15545 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS15550 PF00324 Amino acid permease AMD15_RS15570 PF12706 Beta-lactamase superfamily domain AMD15_RS15575 PF04820 Tryptophan halogenase AMD15_RS15600 PF00376 MerR family regulatory protein AMD15_RS15600 PF09278 MerR, DNA binding AMD15_RS15605 PF07690 Major Facilitator Superfamily AMD15_RS15615 PF03738 Glutathionylspermidine synthase preATP-grasp AMD15_RS15640 PF04012 PspA/IM30 family AMD15_RS15650 PF01243 Pyridoxamine 5'-phosphate oxidase AMD15_RS15650 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMD15_RS15655 PF01202 Shikimate kinase AMD15_RS15660 PF01761 3-dehydroquinate synthase AMD15_RS15670 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMD15_RS15740 PF02954 Bacterial regulatory protein, Fis family AMD15_RS15740 PF00158 Sigma-54 interaction domain AMD15_RS15740 PF01590 GAF domain AMD15_RS15745 PF07690 Major Facilitator Superfamily AMD15_RS15750 PF00072 Response regulator receiver domain AMD15_RS15750 PF01627 Hpt domain AMD15_RS15750 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS15750 PF00672 HAMP domain AMD15_RS15750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS15750 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD15_RS15755 PF00072 Response regulator receiver domain AMD15_RS15755 PF00672 HAMP domain AMD15_RS15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS15755 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS15755 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD15_RS15755 PF01627 Hpt domain AMD15_RS15765 PF00072 Response regulator receiver domain AMD15_RS15765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS15765 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS15765 PF01627 Hpt domain AMD15_RS15770 PF04264 YceI-like domain AMD15_RS15790 PF03315 Serine dehydratase beta chain AMD15_RS15790 PF03313 Serine dehydratase alpha chain AMD15_RS15795 PF12697 Alpha/beta hydrolase family AMD15_RS15800 PF03447 Homoserine dehydrogenase, NAD binding domain AMD15_RS15800 PF00696 Amino acid kinase family AMD15_RS15800 PF00742 Homoserine dehydrogenase AMD15_RS15805 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD15_RS15810 PF00561 alpha/beta hydrolase fold AMD15_RS15815 PF08525 Opacity-associated protein A N-terminal motif AMD15_RS15815 PF01476 LysM domain AMD15_RS15815 PF01551 Peptidase family M23 AMD15_RS15820 PF00009 Elongation factor Tu GTP binding domain AMD15_RS15820 PF16658 Class II release factor RF3, C-terminal domain AMD15_RS15825 PF03006 Haemolysin-III related AMD15_RS15830 PF05170 AsmA family AMD15_RS15835 PF00478 IMP dehydrogenase / GMP reductase domain AMD15_RS15835 PF00571 CBS domain AMD15_RS15840 PF00535 Glycosyl transferase family 2 AMD15_RS15845 PF00912 Transglycosylase AMD15_RS15850 PF01430 Hsp33 protein AMD15_RS15860 PF00593 TonB dependent receptor AMD15_RS15860 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS15870 PF00440 Bacterial regulatory proteins, tetR family AMD15_RS15875 PF00561 alpha/beta hydrolase fold AMD15_RS15880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD15_RS15880 PF09317 Domain of unknown function (DUF1974) AMD15_RS15880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD15_RS15905 PF01597 Glycine cleavage H-protein AMD15_RS15910 PF01571 Aminomethyltransferase folate-binding domain AMD15_RS15910 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD15_RS15920 PF16200 C-terminal region of band_7 AMD15_RS15920 PF01145 SPFH domain / Band 7 family AMD15_RS15925 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMD15_RS15930 PF03819 MazG nucleotide pyrophosphohydrolase domain AMD15_RS15935 PF00459 Inositol monophosphatase family AMD15_RS15940 PF00293 NUDIX domain AMD15_RS15945 PF00202 Aminotransferase class-III AMD15_RS15950 PF04452 RNA methyltransferase AMD15_RS15955 PF02685 Glucokinase AMD15_RS15970 PF00704 Glycosyl hydrolases family 18 AMD15_RS15970 PF01476 LysM domain AMD15_RS15975 PF02838 Glycosyl hydrolase family 20, domain 2 AMD15_RS15975 PF00728 Glycosyl hydrolase family 20, catalytic domain AMD15_RS15975 PF07691 PA14 domain AMD15_RS15985 PF14310 Fibronectin type III-like domain AMD15_RS15985 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD15_RS15985 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD15_RS15985 PF07691 PA14 domain AMD15_RS15995 PF01301 Glycosyl hydrolases family 35 AMD15_RS16000 PF13520 Amino acid permease AMD15_RS16010 PF02056 Family 4 glycosyl hydrolase AMD15_RS16010 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMD15_RS16020 PF07971 Glycosyl hydrolase family 92 AMD15_RS16020 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD15_RS16025 PF01301 Glycosyl hydrolases family 35 AMD15_RS16055 PF03932 CutC family AMD15_RS16060 PF01112 Asparaginase AMD15_RS16070 PF13302 Acetyltransferase (GNAT) domain AMD15_RS16085 PF00072 Response regulator receiver domain AMD15_RS16085 PF01584 CheW-like domain AMD15_RS16085 PF01627 Hpt domain AMD15_RS16085 PF02895 Signal transducing histidine kinase, homodimeric domain AMD15_RS16085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS16090 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMD15_RS16090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS16095 PF01584 CheW-like domain AMD15_RS16100 PF00072 Response regulator receiver domain AMD15_RS16105 PF00072 Response regulator receiver domain AMD15_RS16110 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMD15_RS16110 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMD15_RS16120 PF03747 ADP-ribosylglycohydrolase AMD15_RS16125 PF00814 Glycoprotease family AMD15_RS16130 PF04851 Type III restriction enzyme, res subunit AMD15_RS16130 PF13307 Helicase C-terminal domain AMD15_RS16140 PF00912 Transglycosylase AMD15_RS16140 PF00905 Penicillin binding protein transpeptidase domain AMD15_RS16140 PF14814 Bifunctional transglycosylase second domain AMD15_RS16145 PF00535 Glycosyl transferase family 2 AMD15_RS16155 PF13291 ACT domain AMD15_RS16155 PF04607 Region found in RelA / SpoT proteins AMD15_RS16155 PF02824 TGS domain AMD15_RS16160 PF12706 Beta-lactamase superfamily domain AMD15_RS16165 PF03070 TENA/THI-4/PQQC family AMD15_RS16170 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMD15_RS16175 PF04055 Radical SAM superfamily AMD15_RS16175 PF13186 Iron-sulfur cluster-binding domain AMD15_RS16190 PF02685 Glucokinase AMD15_RS16200 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMD15_RS16200 PF11898 Domain of unknown function (DUF3418) AMD15_RS16200 PF00270 DEAD/DEAH box helicase AMD15_RS16200 PF04408 Helicase associated domain (HA2) AMD15_RS16200 PF00271 Helicase conserved C-terminal domain AMD15_RS16205 PF00210 Ferritin-like domain AMD15_RS16210 PF00570 HRDC domain AMD15_RS16210 PF00271 Helicase conserved C-terminal domain AMD15_RS16210 PF16124 RecQ zinc-binding AMD15_RS16210 PF00270 DEAD/DEAH box helicase AMD15_RS16210 PF09382 RQC domain AMD15_RS16245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS16245 PF02203 Tar ligand binding domain homologue AMD15_RS16245 PF00672 HAMP domain AMD15_RS16250 PF01810 LysE type translocator AMD15_RS16255 PF03466 LysR substrate binding domain AMD15_RS16255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS16265 PF13426 PAS domain AMD15_RS16265 PF07536 HWE histidine kinase AMD15_RS16265 PF13581 Histidine kinase-like ATPase domain AMD15_RS16270 PF06508 Queuosine biosynthesis protein QueC AMD15_RS16280 PF04055 Radical SAM superfamily AMD15_RS16290 PF00691 OmpA family AMD15_RS16295 PF07676 WD40-like Beta Propeller Repeat AMD15_RS16295 PF04052 TolB amino-terminal domain AMD15_RS16305 PF02472 Biopolymer transport protein ExbD/TolR AMD15_RS16310 PF01618 MotA/TolQ/ExbB proton channel family AMD15_RS16315 PF03061 Thioesterase superfamily AMD15_RS16320 PF05491 RuvB C-terminal winged helix domain AMD15_RS16320 PF17864 RuvB AAA lid domain AMD15_RS16320 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMD15_RS16330 PF02705 K+ potassium transporter AMD15_RS16335 PF07499 RuvA, C-terminal domain AMD15_RS16335 PF01330 RuvA N terminal domain AMD15_RS16340 PF02075 Crossover junction endodeoxyribonuclease RuvC AMD15_RS16345 PF01709 Transcriptional regulator AMD15_RS16360 PF01336 OB-fold nucleic acid binding domain AMD15_RS16360 PF02938 GAD domain AMD15_RS16360 PF00152 tRNA synthetases class II (D, K and N) AMD15_RS16375 PF07690 Major Facilitator Superfamily AMD15_RS16400 PF03466 LysR substrate binding domain AMD15_RS16400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS16410 PF00005 ABC transporter AMD15_RS16410 PF12848 ABC transporter AMD15_RS16415 PF00593 TonB dependent receptor AMD15_RS16415 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS16430 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS16430 PF00593 TonB dependent receptor AMD15_RS16435 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS16435 PF00593 TonB dependent receptor AMD15_RS16440 PF00067 Cytochrome P450 AMD15_RS16445 PF02254 TrkA-N domain AMD15_RS16445 PF00999 Sodium/hydrogen exchanger family AMD15_RS16470 PF07660 Secretin and TonB N terminus short domain AMD15_RS16470 PF00593 TonB dependent receptor AMD15_RS16470 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS16480 PF06276 Ferric iron reductase FhuF-like transporter AMD15_RS16480 PF04183 IucA / IucC family AMD15_RS16485 PF07690 Major Facilitator Superfamily AMD15_RS16490 PF04183 IucA / IucC family AMD15_RS16490 PF06276 Ferric iron reductase FhuF-like transporter AMD15_RS16495 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD15_RS16495 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD15_RS16510 PF02654 Cobalamin-5-phosphate synthase AMD15_RS16520 PF02277 Phosphoribosyltransferase AMD15_RS16525 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMD15_RS16530 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD15_RS16530 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMD15_RS16535 PF00155 Aminotransferase class I and II AMD15_RS16540 PF17113 Regulatory signalling modulator protein AmpE AMD15_RS16540 PF03186 CobD/Cbib protein AMD15_RS16545 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMD15_RS16545 PF12557 Cob(I)alamin adenosyltransferase N terminal AMD15_RS16560 PF00593 TonB dependent receptor AMD15_RS16560 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS16565 PF00004 ATPase family associated with various cellular activities (AAA) AMD15_RS16565 PF10431 C-terminal, D2-small domain, of ClpB protein AMD15_RS16565 PF02861 Clp amino terminal domain, pathogenicity island component AMD15_RS16565 PF07724 AAA domain (Cdc48 subfamily) AMD15_RS16565 PF17871 AAA lid domain AMD15_RS16570 PF00005 ABC transporter AMD15_RS16575 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS16580 PF09084 NMT1/THI5 like AMD15_RS16585 PF00248 Aldo/keto reductase family AMD15_RS16590 PF00296 Luciferase-like monooxygenase AMD15_RS16595 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS16595 PF00593 TonB dependent receptor AMD15_RS16600 PF01541 GIY-YIG catalytic domain AMD15_RS16635 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS16635 PF00593 TonB dependent receptor AMD15_RS16640 PF02358 Trehalose-phosphatase AMD15_RS16645 PF00723 Glycosyl hydrolases family 15 AMD15_RS16650 PF00982 Glycosyltransferase family 20 AMD15_RS16655 PF01011 PQQ enzyme repeat AMD15_RS16660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS16660 PF00672 HAMP domain AMD15_RS16660 PF02203 Tar ligand binding domain homologue AMD15_RS16665 PF04134 Protein of unknown function, DUF393 AMD15_RS16675 PF02578 Multi-copper polyphenol oxidoreductase laccase AMD15_RS16680 PF00849 RNA pseudouridylate synthase AMD15_RS16685 PF13525 Outer membrane lipoprotein AMD15_RS16695 PF02540 NAD synthase AMD15_RS16695 PF00795 Carbon-nitrogen hydrolase AMD15_RS16725 PF13406 Transglycosylase SLT domain AMD15_RS16730 PF01526 Tn3 transposase DDE domain AMD15_RS16730 PF13700 Domain of unknown function (DUF4158) AMD15_RS16750 PF01129 NAD:arginine ADP-ribosyltransferase AMD15_RS16775 PF00549 CoA-ligase AMD15_RS16775 PF02629 CoA binding domain AMD15_RS16780 PF08442 ATP-grasp domain AMD15_RS16780 PF00549 CoA-ligase AMD15_RS16785 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS16785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS16790 PF02954 Bacterial regulatory protein, Fis family AMD15_RS16790 PF00158 Sigma-54 interaction domain AMD15_RS16790 PF00072 Response regulator receiver domain AMD15_RS16795 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD15_RS16795 PF00437 Type II/IV secretion system protein AMD15_RS16800 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD15_RS16800 PF00437 Type II/IV secretion system protein AMD15_RS16805 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD15_RS16805 PF00437 Type II/IV secretion system protein AMD15_RS16810 PF07963 Prokaryotic N-terminal methylation motif AMD15_RS16810 PF00114 Pilin (bacterial filament) AMD15_RS16815 PF00114 Pilin (bacterial filament) AMD15_RS16815 PF07963 Prokaryotic N-terminal methylation motif AMD15_RS16820 PF00482 Type II secretion system (T2SS), protein F AMD15_RS16825 PF01478 Type IV leader peptidase family AMD15_RS16825 PF06750 Bacterial Peptidase A24 N-terminal domain AMD15_RS16830 PF01121 Dephospho-CoA kinase AMD15_RS16850 PF13276 HTH-like domain AMD15_RS16850 PF00665 Integrase core domain AMD15_RS16850 PF13333 Integrase core domain AMD15_RS16855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS16855 PF00989 PAS fold AMD15_RS16855 PF16736 Single Cache-like AMD15_RS16855 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS16860 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS16860 PF00072 Response regulator receiver domain AMD15_RS16870 PF08443 RimK-like ATP-grasp domain AMD15_RS16870 PF18030 RimK PreATP-grasp domain AMD15_RS16875 PF00128 Alpha amylase, catalytic domain AMD15_RS16875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD15_RS16930 PF04002 RadC-like JAB domain AMD15_RS16955 PF00072 Response regulator receiver domain AMD15_RS16955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS16955 PF13426 PAS domain AMD15_RS16960 PF00072 Response regulator receiver domain AMD15_RS16960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS16960 PF13426 PAS domain AMD15_RS17000 PF01527 Transposase AMD15_RS17045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS17045 PF13188 PAS domain AMD15_RS17045 PF08448 PAS fold AMD15_RS17045 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS17045 PF00072 Response regulator receiver domain AMD15_RS17070 PF13676 TIR domain AMD15_RS17085 PF00657 GDSL-like Lipase/Acylhydrolase AMD15_RS17085 PF03797 Autotransporter beta-domain AMD15_RS17095 PF05690 Thiazole biosynthesis protein ThiG AMD15_RS17100 PF02390 Putative methyltransferase AMD15_RS17105 PF03600 Citrate transporter AMD15_RS17105 PF02080 TrkA-C domain AMD15_RS17120 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD15_RS17125 PF01741 Large-conductance mechanosensitive channel, MscL AMD15_RS17140 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS17150 PF00703 Glycosyl hydrolases family 2 AMD15_RS17150 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMD15_RS17150 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD15_RS17155 PF10566 Glycoside hydrolase 97 AMD15_RS17155 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD15_RS17155 PF14508 Glycosyl-hydrolase 97 N-terminal AMD15_RS17165 PF00135 Carboxylesterase family AMD15_RS17170 PF00588 SpoU rRNA Methylase family AMD15_RS17170 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD15_RS17180 PF11838 ERAP1-like C-terminal domain AMD15_RS17180 PF01433 Peptidase family M1 domain AMD15_RS17230 PF00873 AcrB/AcrD/AcrF family AMD15_RS17235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS17235 PF00529 HlyD membrane-fusion protein of T1SS AMD15_RS17240 PF00009 Elongation factor Tu GTP binding domain AMD15_RS17245 PF01507 Phosphoadenosine phosphosulfate reductase family AMD15_RS17250 PF00667 FAD binding domain AMD15_RS17250 PF00175 Oxidoreductase NAD-binding domain AMD15_RS17250 PF00258 Flavodoxin AMD15_RS17255 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD15_RS17255 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD15_RS17260 PF01507 Phosphoadenosine phosphosulfate reductase family AMD15_RS17280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS17280 PF01627 Hpt domain AMD15_RS17280 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS17280 PF00072 Response regulator receiver domain AMD15_RS17295 PF03466 LysR substrate binding domain AMD15_RS17295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS17300 PF10414 Sirohaem synthase dimerisation region AMD15_RS17300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD15_RS17300 PF14824 Sirohaem biosynthesis protein central AMD15_RS17305 PF00291 Pyridoxal-phosphate dependent enzyme AMD15_RS17315 PF01661 Macro domain AMD15_RS17320 PF00274 Fructose-bisphosphate aldolase class-I AMD15_RS17325 PF00224 Pyruvate kinase, barrel domain AMD15_RS17325 PF02887 Pyruvate kinase, alpha/beta domain AMD15_RS17330 PF13419 Haloacid dehalogenase-like hydrolase AMD15_RS17335 PF00162 Phosphoglycerate kinase AMD15_RS17355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD15_RS17355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD15_RS17365 PF03922 OmpW family AMD15_RS17370 PF03922 OmpW family AMD15_RS17380 PF04273 Putative phosphatase (DUF442) AMD15_RS17380 PF00753 Metallo-beta-lactamase superfamily AMD15_RS17390 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS17395 PF03459 TOBE domain AMD15_RS17395 PF00005 ABC transporter AMD15_RS17430 PF01476 LysM domain AMD15_RS17430 PF03734 L,D-transpeptidase catalytic domain AMD15_RS17435 PF01551 Peptidase family M23 AMD15_RS17435 PF04225 Opacity-associated protein A LysM-like domain AMD15_RS17445 PF00593 TonB dependent receptor AMD15_RS17445 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS17465 PF02780 Transketolase, C-terminal domain AMD15_RS17465 PF02779 Transketolase, pyrimidine binding domain AMD15_RS17465 PF00456 Transketolase, thiamine diphosphate binding domain AMD15_RS17470 PF00375 Sodium:dicarboxylate symporter family AMD15_RS17480 PF00092 von Willebrand factor type A domain AMD15_RS17480 PF07584 Aerotolerance regulator N-terminal AMD15_RS17500 PF17863 AAA lid domain AMD15_RS17500 PF07726 ATPase family associated with various cellular activities (AAA) AMD15_RS17505 PF11741 AMIN domain AMD15_RS17505 PF07660 Secretin and TonB N terminus short domain AMD15_RS17505 PF03958 Bacterial type II/III secretion system short domain AMD15_RS17505 PF00263 Bacterial type II and III secretion system protein AMD15_RS17510 PF04351 Pilus assembly protein, PilP AMD15_RS17515 PF04350 Pilus assembly protein, PilO AMD15_RS17520 PF05137 Fimbrial assembly protein (PilN) AMD15_RS17525 PF11104 Type IV pilus assembly protein PilM; AMD15_RS17530 PF00905 Penicillin binding protein transpeptidase domain AMD15_RS17530 PF00912 Transglycosylase AMD15_RS17530 PF17092 Penicillin-binding protein OB-like domain AMD15_RS17540 PF00285 Citrate synthase, C-terminal domain AMD15_RS17545 PF01197 Ribosomal protein L31 AMD15_RS17550 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD15_RS17555 PF00271 Helicase conserved C-terminal domain AMD15_RS17555 PF00270 DEAD/DEAH box helicase AMD15_RS17555 PF17191 RecG wedge domain AMD15_RS17560 PF01042 Endoribonuclease L-PSP AMD15_RS17565 PF04607 Region found in RelA / SpoT proteins AMD15_RS17565 PF02824 TGS domain AMD15_RS17565 PF13291 ACT domain AMD15_RS17570 PF01192 RNA polymerase Rpb6 AMD15_RS17575 PF00625 Guanylate kinase AMD15_RS17580 PF03755 YicC-like family, N-terminal region AMD15_RS17580 PF08340 Domain of unknown function (DUF1732) AMD15_RS17585 PF01138 3' exoribonuclease family, domain 1 AMD15_RS17585 PF03725 3' exoribonuclease family, domain 2 AMD15_RS17595 PF01725 Ham1 family AMD15_RS17600 PF04055 Radical SAM superfamily AMD15_RS17600 PF06969 HemN C-terminal domain AMD15_RS17615 PF00557 Metallopeptidase family M24 AMD15_RS17630 PF03695 Uncharacterised protein family (UPF0149) AMD15_RS17640 PF05164 Cell division protein ZapA AMD15_RS17645 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMD15_RS17655 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMD15_RS17665 PF13369 Transglutaminase-like superfamily AMD15_RS17670 PF00301 Rubredoxin AMD15_RS17675 PF02581 Thiamine monophosphate synthase AMD15_RS17690 PF00202 Aminotransferase class-III AMD15_RS17695 PF17874 MalT-like TPR region AMD15_RS17695 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS17700 PF00127 Copper binding proteins, plastocyanin/azurin family AMD15_RS17705 PF00155 Aminotransferase class I and II AMD15_RS17715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD15_RS17715 PF00034 Cytochrome c AMD15_RS17720 PF01593 Flavin containing amine oxidoreductase AMD15_RS17735 PF00202 Aminotransferase class-III AMD15_RS17740 PF00520 Ion transport protein AMD15_RS17740 PF00027 Cyclic nucleotide-binding domain AMD15_RS17755 PF01569 PAP2 superfamily AMD15_RS17760 PF01062 Bestrophin, RFP-TM, chloride channel AMD15_RS17770 PF01225 Mur ligase family, catalytic domain AMD15_RS17770 PF02875 Mur ligase family, glutamate ligase domain AMD15_RS17770 PF08245 Mur ligase middle domain AMD15_RS17780 PF00365 Phosphofructokinase AMD15_RS17790 PF03030 Inorganic H+ pyrophosphatase AMD15_RS17800 PF00719 Inorganic pyrophosphatase AMD15_RS17810 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS17810 PF00593 TonB dependent receptor AMD15_RS17815 PF12833 Helix-turn-helix domain AMD15_RS17820 PF18500 CadC C-terminal domain 1 AMD15_RS17820 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS17825 PF13667 ThiC-associated domain AMD15_RS17825 PF01964 Radical SAM ThiC family AMD15_RS17830 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS17830 PF00593 TonB dependent receptor AMD15_RS17835 PF00672 HAMP domain AMD15_RS17835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS17845 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMD15_RS17845 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMD15_RS17850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD15_RS17850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD15_RS17850 PF00205 Thiamine pyrophosphate enzyme, central domain AMD15_RS17860 PF00291 Pyridoxal-phosphate dependent enzyme AMD15_RS17865 PF08502 LeuA allosteric (dimerisation) domain AMD15_RS17865 PF00682 HMGL-like AMD15_RS17870 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD15_RS17875 PF00694 Aconitase C-terminal domain AMD15_RS17880 PF00330 Aconitase family (aconitate hydratase) AMD15_RS17885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS17890 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS17905 PF02321 Outer membrane efflux protein AMD15_RS17910 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMD15_RS17915 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD15_RS17940 PF00390 Malic enzyme, N-terminal domain AMD15_RS17940 PF03949 Malic enzyme, NAD binding domain AMD15_RS17940 PF01515 Phosphate acetyl/butaryl transferase AMD15_RS17945 PF00375 Sodium:dicarboxylate symporter family AMD15_RS17955 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS17955 PF02743 Cache domain AMD15_RS17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS17960 PF07690 Major Facilitator Superfamily AMD15_RS17970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS17970 PF03466 LysR substrate binding domain AMD15_RS17975 PF00248 Aldo/keto reductase family AMD15_RS17990 PF00072 Response regulator receiver domain AMD15_RS17990 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS18000 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS18000 PF08521 Two-component sensor kinase N-terminal AMD15_RS18000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS18005 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS18005 PF00072 Response regulator receiver domain AMD15_RS18015 PF03600 Citrate transporter AMD15_RS18020 PF00106 short chain dehydrogenase AMD15_RS18025 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS18040 PF00128 Alpha amylase, catalytic domain AMD15_RS18055 PF03193 RsgA GTPase AMD15_RS18060 PF00155 Aminotransferase class I and II AMD15_RS18075 PF00593 TonB dependent receptor AMD15_RS18075 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS18080 PF01522 Polysaccharide deacetylase AMD15_RS18085 PF00462 Glutaredoxin AMD15_RS18100 PF01527 Transposase AMD15_RS18120 PF02645 Uncharacterised protein, DegV family COG1307 AMD15_RS18125 PF01327 Polypeptide deformylase AMD15_RS18130 PF03960 ArsC family AMD15_RS18145 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AMD15_RS18150 PF01270 Glycosyl hydrolases family 8 AMD15_RS18155 PF03170 Bacterial cellulose synthase subunit AMD15_RS18160 PF07238 PilZ domain AMD15_RS18160 PF00535 Glycosyl transferase family 2 AMD15_RS18160 PF03552 Cellulose synthase AMD15_RS18175 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD15_RS18175 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMD15_RS18220 PF00593 TonB dependent receptor AMD15_RS18220 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS18230 PF00392 Bacterial regulatory proteins, gntR family AMD15_RS18230 PF07702 UTRA domain AMD15_RS18240 PF00263 Bacterial type II and III secretion system protein AMD15_RS18240 PF03958 Bacterial type II/III secretion system short domain AMD15_RS18250 PF10741 Type II secretion system (T2SS), protein M subtype b AMD15_RS18255 PF05137 Fimbrial assembly protein (PilN) AMD15_RS18260 PF03934 Type II secretion system (T2SS), protein K AMD15_RS18270 PF07963 Prokaryotic N-terminal methylation motif AMD15_RS18275 PF12019 Type II transport protein GspH AMD15_RS18280 PF08334 Type II secretion system (T2SS), protein G AMD15_RS18285 PF00482 Type II secretion system (T2SS), protein F AMD15_RS18290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD15_RS18290 PF00437 Type II/IV secretion system protein AMD15_RS18295 PF04151 Bacterial pre-peptidase C-terminal domain AMD15_RS18295 PF00082 Subtilase family AMD15_RS18300 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD15_RS18300 PF03895 YadA-like membrane anchor domain AMD15_RS18300 PF13018 Extended Signal Peptide of Type V secretion system AMD15_RS18300 PF05658 Head domain of trimeric autotransporter adhesin AMD15_RS18305 PF04151 Bacterial pre-peptidase C-terminal domain AMD15_RS18305 PF00082 Subtilase family AMD15_RS18310 PF13018 Extended Signal Peptide of Type V secretion system AMD15_RS18310 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD15_RS18310 PF05658 Head domain of trimeric autotransporter adhesin AMD15_RS18310 PF03895 YadA-like membrane anchor domain AMD15_RS18320 PF02769 AIR synthase related protein, C-terminal domain AMD15_RS18320 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMD15_RS18320 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMD15_RS18325 PF13098 Thioredoxin-like domain AMD15_RS18325 PF10411 Disulfide bond isomerase protein N-terminus AMD15_RS18330 PF00589 Phage integrase family AMD15_RS18330 PF02899 Phage integrase, N-terminal SAM-like domain AMD15_RS18345 PF03739 Lipopolysaccharide export system permease LptF/LptG AMD15_RS18355 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD15_RS18355 PF00883 Cytosol aminopeptidase family, catalytic domain AMD15_RS18370 PF00133 tRNA synthetases class I (I, L, M and V) AMD15_RS18370 PF10458 Valyl tRNA synthetase tRNA binding arm AMD15_RS18370 PF08264 Anticodon-binding domain of tRNA AMD15_RS18375 PF00593 TonB dependent receptor AMD15_RS18375 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS18380 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AMD15_RS18380 PF01464 Transglycosylase SLT domain AMD15_RS18385 PF00544 Pectate lyase AMD15_RS18400 PF01066 CDP-alcohol phosphatidyltransferase AMD15_RS18410 PF03129 Anticodon binding domain AMD15_RS18410 PF04073 Aminoacyl-tRNA editing domain AMD15_RS18410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD15_RS18415 PF00816 H-NS histone family AMD15_RS18425 PF02405 Permease MlaE AMD15_RS18430 PF00005 ABC transporter AMD15_RS18435 PF02470 MlaD protein AMD15_RS18435 PF03886 ABC-type transport auxiliary lipoprotein component AMD15_RS18455 PF14307 Glycosyltransferase WbsX AMD15_RS18455 PF05045 Rhamnan synthesis protein F AMD15_RS18460 PF01144 Coenzyme A transferase AMD15_RS18465 PF01144 Coenzyme A transferase AMD15_RS18470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD15_RS18470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD15_RS18470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD15_RS18470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD15_RS18475 PF00483 Nucleotidyl transferase AMD15_RS18475 PF01050 Mannose-6-phosphate isomerase AMD15_RS18480 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD15_RS18480 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD15_RS18480 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD15_RS18485 PF04321 RmlD substrate binding domain AMD15_RS18490 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMD15_RS18495 PF00483 Nucleotidyl transferase AMD15_RS18500 PF16363 GDP-mannose 4,6 dehydratase AMD15_RS18505 PF01012 Electron transfer flavoprotein domain AMD15_RS18510 PF00766 Electron transfer flavoprotein FAD-binding domain AMD15_RS18510 PF01012 Electron transfer flavoprotein domain AMD15_RS18520 PF01040 UbiA prenyltransferase family AMD15_RS18525 PF04030 D-arabinono-1,4-lactone oxidase AMD15_RS18525 PF01565 FAD binding domain AMD15_RS18530 PF00106 short chain dehydrogenase AMD15_RS18540 PF01370 NAD dependent epimerase/dehydratase family AMD15_RS18545 PF01593 Flavin containing amine oxidoreductase AMD15_RS18570 PF00535 Glycosyl transferase family 2 AMD15_RS18580 PF00005 ABC transporter AMD15_RS18580 PF14524 Wzt C-terminal domain AMD15_RS18590 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD15_RS18595 PF00291 Pyridoxal-phosphate dependent enzyme AMD15_RS18595 PF00571 CBS domain AMD15_RS18615 PF00437 Type II/IV secretion system protein AMD15_RS18625 PF14497 Glutathione S-transferase, C-terminal domain AMD15_RS18625 PF02798 Glutathione S-transferase, N-terminal domain AMD15_RS18635 PF00271 Helicase conserved C-terminal domain AMD15_RS18635 PF00270 DEAD/DEAH box helicase AMD15_RS18645 PF00593 TonB dependent receptor AMD15_RS18645 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS18650 PF01242 6-pyruvoyl tetrahydropterin synthase AMD15_RS18670 PF13185 GAF domain AMD15_RS18680 PF00756 Putative esterase AMD15_RS18685 PF00593 TonB dependent receptor AMD15_RS18685 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS18690 PF13419 Haloacid dehalogenase-like hydrolase AMD15_RS18695 PF11799 impB/mucB/samB family C-terminal domain AMD15_RS18695 PF00817 impB/mucB/samB family AMD15_RS18700 PF07977 FabA-like domain AMD15_RS18705 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD15_RS18705 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD15_RS18715 PF01432 Peptidase family M3 AMD15_RS18730 PF07731 Multicopper oxidase AMD15_RS18730 PF00394 Multicopper oxidase AMD15_RS18730 PF07732 Multicopper oxidase AMD15_RS18735 PF05275 Copper resistance protein B precursor (CopB) AMD15_RS18740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD15_RS18765 PF01380 SIS domain AMD15_RS18770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS18775 PF02687 FtsX-like permease family AMD15_RS18775 PF12704 MacB-like periplasmic core domain AMD15_RS18775 PF00005 ABC transporter AMD15_RS18780 PF12704 MacB-like periplasmic core domain AMD15_RS18780 PF02687 FtsX-like permease family AMD15_RS18780 PF00005 ABC transporter AMD15_RS18785 PF12704 MacB-like periplasmic core domain AMD15_RS18785 PF02687 FtsX-like permease family AMD15_RS18795 PF02954 Bacterial regulatory protein, Fis family AMD15_RS18795 PF00072 Response regulator receiver domain AMD15_RS18795 PF00158 Sigma-54 interaction domain AMD15_RS18800 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS18800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS18805 PF12804 MobA-like NTP transferase domain AMD15_RS18805 PF14602 Hexapeptide repeat of succinyl-transferase AMD15_RS18805 PF00132 Bacterial transferase hexapeptide (six repeats) AMD15_RS18820 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMD15_RS18820 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMD15_RS18825 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD15_RS18825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD15_RS18830 PF00231 ATP synthase AMD15_RS18835 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD15_RS18835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD15_RS18835 PF00306 ATP synthase alpha/beta chain, C terminal domain AMD15_RS18840 PF00213 ATP synthase delta (OSCP) subunit AMD15_RS18845 PF00430 ATP synthase B/B' CF(0) AMD15_RS18850 PF00137 ATP synthase subunit C AMD15_RS18855 PF00119 ATP synthase A chain AMD15_RS18875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS18875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD15_RS18885 PF02817 e3 binding domain AMD15_RS18885 PF00364 Biotin-requiring enzyme AMD15_RS18885 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD15_RS18925 PF03180 NLPA lipoprotein AMD15_RS18930 PF00528 Binding-protein-dependent transport system inner membrane component AMD15_RS18935 PF09383 NIL domain AMD15_RS18935 PF00005 ABC transporter AMD15_RS18940 PF00892 EamA-like transporter family AMD15_RS18945 PF04461 Protein of unknown function (DUF520) AMD15_RS18955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS18955 PF00989 PAS fold AMD15_RS18955 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMD15_RS18955 PF01627 Hpt domain AMD15_RS18955 PF00072 Response regulator receiver domain AMD15_RS18955 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS18980 PF13419 Haloacid dehalogenase-like hydrolase AMD15_RS18985 PF01479 S4 domain AMD15_RS18985 PF00849 RNA pseudouridylate synthase AMD15_RS18990 PF08468 Methyltransferase small domain N-terminal AMD15_RS18990 PF05175 Methyltransferase small domain AMD15_RS19000 PF07995 Glucose / Sorbosone dehydrogenase AMD15_RS19010 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS19010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS19010 PF00989 PAS fold AMD15_RS19030 PF01168 Alanine racemase, N-terminal domain AMD15_RS19030 PF00842 Alanine racemase, C-terminal domain AMD15_RS19035 PF01266 FAD dependent oxidoreductase AMD15_RS19040 PF01037 Lrp/AsnC ligand binding domain AMD15_RS19050 PF01641 SelR domain AMD15_RS19060 PF01618 MotA/TolQ/ExbB proton channel family AMD15_RS19065 PF00691 OmpA family AMD15_RS19065 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD15_RS19090 PF01061 ABC-2 type transporter AMD15_RS19095 PF00005 ABC transporter AMD15_RS19100 PF00999 Sodium/hydrogen exchanger family AMD15_RS19105 PF02469 Fasciclin domain AMD15_RS19110 PF03167 Uracil DNA glycosylase superfamily AMD15_RS19120 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD15_RS19130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS19130 PF03466 LysR substrate binding domain AMD15_RS19135 PF03358 NADPH-dependent FMN reductase AMD15_RS19140 PF00248 Aldo/keto reductase family AMD15_RS19150 PF01431 Peptidase family M13 AMD15_RS19150 PF05649 Peptidase family M13 AMD15_RS19170 PF13520 Amino acid permease AMD15_RS19180 PF04397 LytTr DNA-binding domain AMD15_RS19180 PF00072 Response regulator receiver domain AMD15_RS19185 PF00672 HAMP domain AMD15_RS19185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS19185 PF06580 Histidine kinase AMD15_RS19185 PF02743 Cache domain AMD15_RS19200 PF05974 Domain of unknown function (DUF892) AMD15_RS19205 PF05067 Manganese containing catalase AMD15_RS19225 PF01739 CheR methyltransferase, SAM binding domain AMD15_RS19225 PF01339 CheB methylesterase AMD15_RS19225 PF03705 CheR methyltransferase, all-alpha domain AMD15_RS19225 PF08448 PAS fold AMD15_RS19240 PF00158 Sigma-54 interaction domain AMD15_RS19240 PF00072 Response regulator receiver domain AMD15_RS19240 PF02954 Bacterial regulatory protein, Fis family AMD15_RS19250 PF01654 Cytochrome bd terminal oxidase subunit I AMD15_RS19255 PF02322 Cytochrome bd terminal oxidase subunit II AMD15_RS19275 PF16363 GDP-mannose 4,6 dehydratase AMD15_RS19285 PF03275 UDP-galactopyranose mutase AMD15_RS19295 PF00005 ABC transporter AMD15_RS19295 PF00664 ABC transporter transmembrane region AMD15_RS19310 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS19310 PF00107 Zinc-binding dehydrogenase AMD15_RS19310 PF13823 Alcohol dehydrogenase GroES-associated AMD15_RS19355 PF00593 TonB dependent receptor AMD15_RS19355 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS19370 PF00005 ABC transporter AMD15_RS19380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS19380 PF03466 LysR substrate binding domain AMD15_RS19385 PF01042 Endoribonuclease L-PSP AMD15_RS19395 PF01527 Transposase AMD15_RS19415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD15_RS19415 PF02203 Tar ligand binding domain homologue AMD15_RS19415 PF00672 HAMP domain AMD15_RS19430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS19430 PF03466 LysR substrate binding domain AMD15_RS19435 PF02525 Flavodoxin-like fold AMD15_RS19475 PF00557 Metallopeptidase family M24 AMD15_RS19495 PF04542 Sigma-70 region 2 AMD15_RS19495 PF00140 Sigma-70 factor, region 1.2 AMD15_RS19495 PF04545 Sigma-70, region 4 AMD15_RS19495 PF04539 Sigma-70 region 3 AMD15_RS19495 PF03979 Sigma-70 factor, region 1.1 AMD15_RS19495 PF04546 Sigma-70, non-essential region AMD15_RS19500 PF02580 D-Tyr-tRNA(Tyr) deacylase AMD15_RS19505 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD15_RS19520 PF00925 GTP cyclohydrolase II AMD15_RS19540 PF00535 Glycosyl transferase family 2 AMD15_RS19555 PF01029 NusB family AMD15_RS19555 PF01189 16S rRNA methyltransferase RsmB/F AMD15_RS19560 PF00551 Formyl transferase AMD15_RS19560 PF02911 Formyl transferase, C-terminal domain AMD15_RS19565 PF01327 Polypeptide deformylase AMD15_RS19570 PF01476 LysM domain AMD15_RS19575 PF17782 DprA winged helix domain AMD15_RS19575 PF02481 DNA recombination-mediator protein A AMD15_RS19580 PF04361 Protein of unknown function (DUF494) AMD15_RS19585 PF07963 Prokaryotic N-terminal methylation motif AMD15_RS19585 PF00114 Pilin (bacterial filament) AMD15_RS19595 PF01751 Toprim domain AMD15_RS19595 PF01131 DNA topoisomerase AMD15_RS19595 PF13368 Topoisomerase C-terminal repeat AMD15_RS19600 PF01300 Telomere recombination AMD15_RS19625 PF01343 Peptidase family S49 AMD15_RS19630 PF01554 MatE AMD15_RS19650 PF00270 DEAD/DEAH box helicase AMD15_RS19650 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMD15_RS19650 PF18074 Primosomal protein N C-terminal domain AMD15_RS19650 PF17764 3′ DNA-binding domain (3′BD) AMD15_RS19650 PF00271 Helicase conserved C-terminal domain AMD15_RS19655 PF13417 Glutathione S-transferase, N-terminal domain AMD15_RS19655 PF00043 Glutathione S-transferase, C-terminal domain AMD15_RS19670 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD15_RS19675 PF03458 UPF0126 domain AMD15_RS19680 PF04542 Sigma-70 region 2 AMD15_RS19680 PF04545 Sigma-70, region 4 AMD15_RS19685 PF03167 Uracil DNA glycosylase superfamily AMD15_RS19690 PF00072 Response regulator receiver domain AMD15_RS19690 PF01339 CheB methylesterase AMD15_RS19695 PF18075 FtsX extracellular domain AMD15_RS19700 PF00005 ABC transporter AMD15_RS19705 PF00270 DEAD/DEAH box helicase AMD15_RS19705 PF00271 Helicase conserved C-terminal domain AMD15_RS19705 PF12300 ATP-dependent RNA helicase RhlB AMD15_RS19710 PF00085 Thioredoxin AMD15_RS19715 PF07498 Rho termination factor, N-terminal domain AMD15_RS19715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD15_RS19715 PF07497 Rho termination factor, RNA-binding domain AMD15_RS19720 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMD15_RS19725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS19725 PF03466 LysR substrate binding domain AMD15_RS19735 PF03971 Monomeric isocitrate dehydrogenase AMD15_RS19750 PF09704 CRISPR-associated protein (Cas_Cas5) AMD15_RS19770 PF01867 CRISPR associated protein Cas1 AMD15_RS19775 PF09827 CRISPR associated protein Cas2 AMD15_RS19785 PF04972 BON domain AMD15_RS19785 PF01476 LysM domain AMD15_RS19790 PF14489 QueF-like protein AMD15_RS19790 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMD15_RS19795 PF01546 Peptidase family M20/M25/M40 AMD15_RS19795 PF07687 Peptidase dimerisation domain AMD15_RS19800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS19805 PF00873 AcrB/AcrD/AcrF family AMD15_RS19810 PF00873 AcrB/AcrD/AcrF family AMD15_RS19815 PF07063 Domain of unknown function (DUF1338) AMD15_RS19855 PF01427 D-ala-D-ala dipeptidase AMD15_RS19860 PF01510 N-acetylmuramoyl-L-alanine amidase AMD15_RS19870 PF13378 Enolase C-terminal domain-like AMD15_RS19870 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD15_RS19880 PF13520 Amino acid permease AMD15_RS19895 PF05360 yiaA/B two helix domain AMD15_RS19900 PF07995 Glucose / Sorbosone dehydrogenase AMD15_RS19905 PF14310 Fibronectin type III-like domain AMD15_RS19905 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD15_RS19905 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD15_RS19910 PF02152 Dihydroneopterin aldolase AMD15_RS19915 PF00814 Glycoprotease family AMD15_RS19920 PF01165 Ribosomal protein S21 AMD15_RS19925 PF09424 Yqey-like protein AMD15_RS19930 PF03631 Virulence factor BrkB AMD15_RS19935 PF10410 DnaB-helicase binding domain of primase AMD15_RS19935 PF08278 DNA primase DnaG DnaB-binding AMD15_RS19935 PF08275 DNA primase catalytic core, N-terminal domain AMD15_RS19935 PF01807 CHC2 zinc finger AMD15_RS19940 PF13593 SBF-like CPA transporter family (DUF4137) AMD15_RS19950 PF01040 UbiA prenyltransferase family AMD15_RS19975 PF00510 Cytochrome c oxidase subunit III AMD15_RS19980 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMD15_RS19985 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD15_RS19990 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMD15_RS19990 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD15_RS20000 PF00171 Aldehyde dehydrogenase family AMD15_RS20000 PF01619 Proline dehydrogenase AMD15_RS20000 PF14850 DNA-binding domain of Proline dehydrogenase AMD15_RS20000 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD15_RS20035 PF00579 tRNA synthetases class I (W and Y) AMD15_RS20040 PF04225 Opacity-associated protein A LysM-like domain AMD15_RS20040 PF01551 Peptidase family M23 AMD15_RS20045 PF03702 Anhydro-N-acetylmuramic acid kinase AMD15_RS20055 PF07690 Major Facilitator Superfamily AMD15_RS20060 PF03372 Endonuclease/Exonuclease/phosphatase family AMD15_RS20065 PF00156 Phosphoribosyl transferase domain AMD15_RS20075 PF13614 AAA domain AMD15_RS20080 PF02195 ParB-like nuclease domain AMD15_RS20080 PF17762 HTH domain found in ParB protein AMD15_RS20090 PF01370 NAD dependent epimerase/dehydratase family AMD15_RS20095 PF00535 Glycosyl transferase family 2 AMD15_RS20110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD15_RS20110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD15_RS20110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD15_RS20110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD15_RS20115 PF00692 dUTPase AMD15_RS20120 PF04127 DNA / pantothenate metabolism flavoprotein AMD15_RS20120 PF02441 Flavoprotein AMD15_RS20125 PF04002 RadC-like JAB domain AMD15_RS20130 PF00750 tRNA synthetases class I (R) AMD15_RS20130 PF05746 DALR anticodon binding domain AMD15_RS20130 PF03485 Arginyl tRNA synthetase N terminal domain AMD15_RS20145 PF00106 short chain dehydrogenase AMD15_RS20150 PF01757 Acyltransferase family AMD15_RS20155 PF03033 Glycosyltransferase family 28 N-terminal domain AMD15_RS20160 PF00501 AMP-binding enzyme AMD15_RS20160 PF13193 AMP-binding enzyme C-terminal domain AMD15_RS20160 PF00975 Thioesterase domain AMD15_RS20160 PF00668 Condensation domain AMD15_RS20160 PF00550 Phosphopantetheine attachment site AMD15_RS20170 PF17810 Arginine decarboxylase helical bundle domain AMD15_RS20170 PF17944 Arginine decarboxylase C-terminal helical extension AMD15_RS20170 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD15_RS20175 PF17284 Spermidine synthase tetramerisation domain AMD15_RS20205 PF00543 Nitrogen regulatory protein P-II AMD15_RS20210 PF04380 Membrane fusogenic activity AMD15_RS20215 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMD15_RS20215 PF01078 Magnesium chelatase, subunit ChlI AMD15_RS20230 PF12792 CSS motif domain associated with EAL AMD15_RS20230 PF00563 EAL domain AMD15_RS20235 PF00487 Fatty acid desaturase AMD15_RS20240 PF00175 Oxidoreductase NAD-binding domain AMD15_RS20240 PF00970 Oxidoreductase FAD-binding domain AMD15_RS20240 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD15_RS20245 PF00440 Bacterial regulatory proteins, tetR family AMD15_RS20265 PF01139 tRNA-splicing ligase RtcB AMD15_RS20305 PF08338 Domain of unknown function (DUF1731) AMD15_RS20305 PF01370 NAD dependent epimerase/dehydratase family AMD15_RS20310 PF00072 Response regulator receiver domain AMD15_RS20310 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS20315 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS20315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS20315 PF08521 Two-component sensor kinase N-terminal AMD15_RS20335 PF00595 PDZ domain AMD15_RS20355 PF01594 AI-2E family transporter AMD15_RS20360 PF13419 Haloacid dehalogenase-like hydrolase AMD15_RS20365 PF00883 Cytosol aminopeptidase family, catalytic domain AMD15_RS20365 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD15_RS20375 PF04542 Sigma-70 region 2 AMD15_RS20375 PF08281 Sigma-70, region 4 AMD15_RS20380 PF00199 Catalase AMD15_RS20395 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS20395 PF00072 Response regulator receiver domain AMD15_RS20400 PF07730 Histidine kinase AMD15_RS20405 PF13533 Biotin-lipoyl like AMD15_RS20410 PF00005 ABC transporter AMD15_RS20435 PF00892 EamA-like transporter family AMD15_RS20450 PF00753 Metallo-beta-lactamase superfamily AMD15_RS20455 PF00579 tRNA synthetases class I (W and Y) AMD15_RS20460 PF05532 CsbD-like AMD15_RS20475 PF00491 Arginase family AMD15_RS20500 PF02223 Thymidylate kinase AMD15_RS20515 PF03309 Type III pantothenate kinase AMD15_RS20520 PF08279 HTH domain AMD15_RS20520 PF02237 Biotin protein ligase C terminal domain AMD15_RS20520 PF03099 Biotin/lipoate A/B protein ligase family AMD15_RS20530 PF06167 Glucose-regulated metallo-peptidase M90 AMD15_RS20545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS20550 PF00072 Response regulator receiver domain AMD15_RS20550 PF00486 Transcriptional regulatory protein, C terminal AMD15_RS20560 PF01207 Dihydrouridine synthase (Dus) AMD15_RS20580 PF06733 DEAD_2 AMD15_RS20580 PF13307 Helicase C-terminal domain AMD15_RS20595 PF01488 Shikimate / quinate 5-dehydrogenase AMD15_RS20595 PF08501 Shikimate dehydrogenase substrate binding domain AMD15_RS20595 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMD15_RS20605 PF00258 Flavodoxin AMD15_RS20605 PF00667 FAD binding domain AMD15_RS20605 PF00175 Oxidoreductase NAD-binding domain AMD15_RS20615 PF03466 LysR substrate binding domain AMD15_RS20615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS20625 PF00490 Delta-aminolevulinic acid dehydratase AMD15_RS20650 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD15_RS20650 PF00326 Prolyl oligopeptidase family AMD15_RS20655 PF00043 Glutathione S-transferase, C-terminal domain AMD15_RS20655 PF02798 Glutathione S-transferase, N-terminal domain AMD15_RS20680 PF04820 Tryptophan halogenase AMD15_RS20695 PF00005 ABC transporter AMD15_RS20705 PF01381 Helix-turn-helix AMD15_RS20715 PF01229 Glycosyl hydrolases family 39 AMD15_RS20720 PF02583 Metal-sensitive transcriptional repressor AMD15_RS20725 PF01545 Cation efflux family AMD15_RS20725 PF16916 Dimerisation domain of Zinc Transporter AMD15_RS20735 PF00593 TonB dependent receptor AMD15_RS20735 PF07715 TonB-dependent Receptor Plug Domain AMD15_RS20745 PF01965 DJ-1/PfpI family AMD15_RS20745 PF12833 Helix-turn-helix domain AMD15_RS20750 PF00175 Oxidoreductase NAD-binding domain AMD15_RS20750 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD15_RS20750 PF00970 Oxidoreductase FAD-binding domain AMD15_RS20755 PF00005 ABC transporter AMD15_RS20760 PF01061 ABC-2 type transporter AMD15_RS20770 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMD15_RS20770 PF02558 Ketopantoate reductase PanE/ApbA AMD15_RS20800 PF00268 Ribonucleotide reductase, small chain AMD15_RS20805 PF03477 ATP cone domain AMD15_RS20805 PF02867 Ribonucleotide reductase, barrel domain AMD15_RS20805 PF00317 Ribonucleotide reductase, all-alpha domain AMD15_RS20815 PF13607 Succinyl-CoA ligase like flavodoxin domain AMD15_RS20815 PF13380 CoA binding domain AMD15_RS20815 PF00583 Acetyltransferase (GNAT) family AMD15_RS20820 PF01769 Divalent cation transporter AMD15_RS20820 PF03448 MgtE intracellular N domain AMD15_RS20820 PF00571 CBS domain AMD15_RS20825 PF00194 Eukaryotic-type carbonic anhydrase AMD15_RS20830 PF00999 Sodium/hydrogen exchanger family AMD15_RS20830 PF02254 TrkA-N domain AMD15_RS20835 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD15_RS20835 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD15_RS20840 PF00723 Glycosyl hydrolases family 15 AMD15_RS20855 PF05166 YcgL domain AMD15_RS20860 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD15_RS20860 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD15_RS20870 PF00535 Glycosyl transferase family 2 AMD15_RS20925 PF07977 FabA-like domain AMD15_RS20930 PF01553 Acyltransferase AMD15_RS20940 PF00550 Phosphopantetheine attachment site AMD15_RS20945 PF04820 Tryptophan halogenase AMD15_RS20965 PF07676 WD40-like Beta Propeller Repeat AMD15_RS20965 PF00326 Prolyl oligopeptidase family AMD15_RS20980 PF01218 Coproporphyrinogen III oxidase AMD15_RS20985 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD15_RS20985 PF00476 DNA polymerase family A AMD15_RS20985 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD15_RS20985 PF01612 3'-5' exonuclease AMD15_RS20995 PF06812 ImpA, N-terminal, type VI secretion system AMD15_RS21015 PF03793 PASTA domain AMD15_RS21015 PF00069 Protein kinase domain AMD15_RS21030 PF06761 Intracellular multiplication and human macrophage-killing AMD15_RS21030 PF06744 Type VI secretion protein IcmF C-terminal AMD15_RS21030 PF14331 ImcF-related N-terminal domain AMD15_RS21040 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AMD15_RS21055 PF04717 Type VI secretion system, phage-baseplate injector AMD15_RS21070 PF00069 Protein kinase domain AMD15_RS21070 PF03793 PASTA domain AMD15_RS21080 PF04542 Sigma-70 region 2 AMD15_RS21080 PF08281 Sigma-70, region 4 AMD15_RS21095 PF00328 Histidine phosphatase superfamily (branch 2) AMD15_RS21125 PF07724 AAA domain (Cdc48 subfamily) AMD15_RS21125 PF17871 AAA lid domain AMD15_RS21125 PF10431 C-terminal, D2-small domain, of ClpB protein AMD15_RS21125 PF00004 ATPase family associated with various cellular activities (AAA) AMD15_RS21135 PF05947 Type VI secretion system, TssF AMD15_RS21140 PF04965 Gene 25-like lysozyme AMD15_RS21145 PF07024 ImpE protein AMD15_RS21150 PF05638 Type VI secretion system effector, Hcp AMD15_RS21155 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMD15_RS21160 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMD15_RS21175 PF12464 Maltose acetyltransferase AMD15_RS21175 PF14602 Hexapeptide repeat of succinyl-transferase AMD15_RS21195 PF13396 Phospholipase_D-nuclease N-terminal AMD15_RS21195 PF13091 PLD-like domain AMD15_RS21200 PF03466 LysR substrate binding domain AMD15_RS21200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS21205 PF03737 Aldolase/RraA AMD15_RS21210 PF04303 PrpF protein AMD15_RS21215 PF04909 Amidohydrolase AMD15_RS21220 PF00471 Ribosomal protein L33 AMD15_RS21225 PF00830 Ribosomal L28 family AMD15_RS21230 PF00873 AcrB/AcrD/AcrF family AMD15_RS21235 PF13533 Biotin-lipoyl like AMD15_RS21255 PF02527 rRNA small subunit methyltransferase G AMD15_RS21260 PF09423 PhoD-like phosphatase AMD15_RS21260 PF16655 PhoD-like phosphatase, N-terminal domain AMD15_RS21265 PF16655 PhoD-like phosphatase, N-terminal domain AMD15_RS21265 PF09423 PhoD-like phosphatase AMD15_RS21270 PF01648 4'-phosphopantetheinyl transferase superfamily AMD15_RS21280 PF04226 Transglycosylase associated protein AMD15_RS21290 PF03372 Endonuclease/Exonuclease/phosphatase family AMD15_RS21295 PF00480 ROK family AMD15_RS21305 PF09312 SurA N-terminal domain AMD15_RS21315 PF00474 Sodium:solute symporter family AMD15_RS21320 PF04341 Protein of unknown function, DUF485 AMD15_RS21330 PF16177 Acetyl-coenzyme A synthetase N-terminus AMD15_RS21330 PF00501 AMP-binding enzyme AMD15_RS21330 PF13193 AMP-binding enzyme C-terminal domain AMD15_RS21335 PF00072 Response regulator receiver domain AMD15_RS21335 PF00196 Bacterial regulatory proteins, luxR family AMD15_RS21360 PF04616 Glycosyl hydrolases family 43 AMD15_RS21360 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD15_RS21370 PF00248 Aldo/keto reductase family AMD15_RS21385 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD15_RS21390 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD15_RS21390 PF13378 Enolase C-terminal domain-like AMD15_RS21400 PF05336 L-rhamnose mutarotase AMD15_RS21405 PF07690 Major Facilitator Superfamily AMD15_RS21410 PF01614 Bacterial transcriptional regulator AMD15_RS21410 PF09339 IclR helix-turn-helix domain AMD15_RS21415 PF02659 Putative manganese efflux pump AMD15_RS21420 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS21420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS21435 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AMD15_RS21435 PF06165 Glycosyltransferase family 36 AMD15_RS21450 PF13570 PQQ-like domain AMD15_RS21450 PF13360 PQQ-like domain AMD15_RS21450 PF01011 PQQ enzyme repeat AMD15_RS21470 PF04357 TamB, inner membrane protein subunit of TAM complex AMD15_RS21475 PF17243 POTRA domain TamA domain 1 AMD15_RS21475 PF01103 Surface antigen AMD15_RS21505 PF00664 ABC transporter transmembrane region AMD15_RS21505 PF03412 Peptidase C39 family AMD15_RS21505 PF00005 ABC transporter AMD15_RS21510 PF05746 DALR anticodon binding domain AMD15_RS21510 PF02092 Glycyl-tRNA synthetase beta subunit AMD15_RS21515 PF02091 Glycyl-tRNA synthetase alpha subunit AMD15_RS21520 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD15_RS21520 PF00437 Type II/IV secretion system protein AMD15_RS21530 PF00117 Glutamine amidotransferase class-I AMD15_RS21530 PF00958 GMP synthase C terminal domain AMD15_RS21540 PF00902 Sec-independent protein translocase protein (TatC) AMD15_RS21545 PF02416 mttA/Hcf106 family AMD15_RS21550 PF02416 mttA/Hcf106 family AMD15_RS21560 PF00762 Ferrochelatase AMD15_RS21565 PF12697 Alpha/beta hydrolase family AMD15_RS21580 PF04381 Putative exonuclease, RdgC AMD15_RS21585 PF01171 PP-loop family AMD15_RS21595 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS21600 PF07477 Glycosyl hydrolase family 67 C-terminus AMD15_RS21600 PF03648 Glycosyl hydrolase family 67 N-terminus AMD15_RS21600 PF07488 Glycosyl hydrolase family 67 middle domain AMD15_RS21610 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD15_RS21610 PF13378 Enolase C-terminal domain-like AMD15_RS21615 PF04616 Glycosyl hydrolases family 43 AMD15_RS21615 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD15_RS21620 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD15_RS21620 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD15_RS21620 PF14310 Fibronectin type III-like domain AMD15_RS21620 PF07691 PA14 domain AMD15_RS21625 PF01232 Mannitol dehydrogenase Rossmann domain AMD15_RS21625 PF08125 Mannitol dehydrogenase C-terminal domain AMD15_RS21650 PF00171 Aldehyde dehydrogenase family AMD15_RS21675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD15_RS21675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD15_RS21700 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD15_RS21705 PF00331 Glycosyl hydrolase family 10 AMD15_RS21710 PF00703 Glycosyl hydrolases family 2 AMD15_RS21710 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD15_RS21710 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD15_RS21710 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD15_RS21710 PF16355 Domain of unknown function (DUF4982) AMD15_RS21715 PF02614 Glucuronate isomerase AMD15_RS21720 PF00331 Glycosyl hydrolase family 10 AMD15_RS21720 PF00553 Cellulose binding domain AMD15_RS21720 PF03422 Carbohydrate binding module (family 6) AMD15_RS21735 PF00553 Cellulose binding domain AMD15_RS21735 PF03422 Carbohydrate binding module (family 6) AMD15_RS21735 PF00331 Glycosyl hydrolase family 10 AMD15_RS21755 PF04616 Glycosyl hydrolases family 43 AMD15_RS21790 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD15_RS21790 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD15_RS21790 PF00107 Zinc-binding dehydrogenase AMD15_RS21790 PF00550 Phosphopantetheine attachment site AMD15_RS21790 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS21790 PF14765 Polyketide synthase dehydratase AMD15_RS21790 PF00698 Acyl transferase domain AMD15_RS21790 PF16197 Ketoacyl-synthetase C-terminal extension AMD15_RS21790 PF08659 KR domain AMD15_RS21795 PF01553 Acyltransferase AMD15_RS21805 PF00356 Bacterial regulatory proteins, lacI family AMD15_RS21825 PF04820 Tryptophan halogenase AMD15_RS21830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD15_RS21835 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMD15_RS21840 PF04337 Protein of unknown function, DUF480 AMD15_RS21855 PF00580 UvrD/REP helicase N-terminal domain AMD15_RS21855 PF13361 UvrD-like helicase C-terminal domain AMD15_RS21860 PF00265 Thymidine kinase AMD15_RS21865 PF00512 His Kinase A (phospho-acceptor) domain AMD15_RS21865 PF08446 PAS fold AMD15_RS21865 PF00360 Phytochrome region AMD15_RS21865 PF01590 GAF domain AMD15_RS21865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD15_RS21870 PF04349 Periplasmic glucan biosynthesis protein, MdoG AMD15_RS21880 PF06827 Zinc finger found in FPG and IleRS AMD15_RS21880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD15_RS21880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD15_RS21915 PF03594 Benzoate membrane transport protein AMD15_RS21920 PF01590 GAF domain AMD15_RS21920 PF08446 PAS fold AMD15_RS21920 PF00360 Phytochrome region AMD15_RS21920 PF13426 PAS domain AMD15_RS21925 PF01126 Heme oxygenase AMD15_RS21930 PF07690 Major Facilitator Superfamily AMD15_RS21935 PF01263 Aldose 1-epimerase AMD15_RS21945 PF02810 SEC-C motif AMD15_RS21950 PF01925 Sulfite exporter TauE/SafE AMD15_RS21970 PF01227 GTP cyclohydrolase I AMD15_RS21980 PF07869 Protein of unknown function (DUF1656) AMD15_RS21985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD15_RS21985 PF00529 HlyD membrane-fusion protein of T1SS AMD15_RS21990 PF02321 Outer membrane efflux protein AMD15_RS21995 PF04632 Fusaric acid resistance protein family AMD15_RS22000 PF00083 Sugar (and other) transporter AMD15_RS22005 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMD15_RS22010 PF13091 PLD-like domain AMD15_RS22010 PF13396 Phospholipase_D-nuclease N-terminal AMD15_RS22035 PF01850 PIN domain AMD15_RS22060 PF00849 RNA pseudouridylate synthase AMD15_RS22095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD15_RS22095 PF00289 Biotin carboxylase, N-terminal domain AMD15_RS22095 PF02785 Biotin carboxylase C-terminal domain AMD15_RS22100 PF01425 Amidase AMD15_RS22130 PF13538 UvrD-like helicase C-terminal domain AMD15_RS22135 PF13361 UvrD-like helicase C-terminal domain AMD15_RS22135 PF00580 UvrD/REP helicase N-terminal domain AMD15_RS22135 PF12705 PD-(D/E)XK nuclease superfamily AMD15_RS22140 PF17946 RecC C-terminal domain AMD15_RS22155 PF00005 ABC transporter AMD15_RS22160 PF02405 Permease MlaE AMD15_RS22165 PF02470 MlaD protein AMD15_RS22170 PF05494 MlaC protein AMD15_RS22180 PF04333 MlaA lipoprotein AMD15_RS22190 PF00255 Glutathione peroxidase AMD15_RS22200 PF02646 RmuC family AMD15_RS22205 PF08240 Alcohol dehydrogenase GroES-like domain AMD15_RS22205 PF00107 Zinc-binding dehydrogenase AMD15_RS22210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD15_RS22210 PF03466 LysR substrate binding domain AMD15_RS22220 PF00043 Glutathione S-transferase, C-terminal domain AMD15_RS22220 PF13417 Glutathione S-transferase, N-terminal domain AMD15_RS22230 PF13520 Amino acid permease AMD15_RS22235 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD15_RS22235 PF07971 Glycosyl hydrolase family 92 AMD15_RS22240 PF10947 Protein of unknown function (DUF2628) AMD15_RS22245 PF00990 Diguanylate cyclase, GGDEF domain AMD15_RS22250 PF17853 GGDEF-like domain AMD15_RS22250 PF13556 PucR C-terminal helix-turn-helix domain AMD15_RS22250 PF05651 Putative sugar diacid recognition AMD15_RS22255 PF02595 Glycerate kinase family AMD15_RS22260 PF07690 Major Facilitator Superfamily AMD15_RS22275 PF17785 PUA-like domain AMD15_RS22275 PF10672 S-adenosylmethionine-dependent methyltransferase AMD15_RS22280 PF03741 Integral membrane protein TerC family AMD15_RS22285 PF01694 Rhomboid family AMD15_RS22290 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD15_RS22300 PF01569 PAP2 superfamily AMD15_RS22305 PF12631 MnmE helical domain AMD15_RS22305 PF01926 50S ribosome-binding GTPase AMD15_RS22305 PF10396 GTP-binding protein TrmE N-terminus AMD15_RS22310 PF01522 Polysaccharide deacetylase AMD15_RS22320 PF02096 60Kd inner membrane protein AMD15_RS22320 PF14849 YidC periplasmic domain AMD15_RS22325 PF00825 Ribonuclease P AMD15_RS22330 PF00468 Ribosomal protein L34