locus-tag	class	description
AMD13_RS00045	COG0187	DNA topoisomerase II activity
AMD13_RS00095	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD13_RS00295	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD13_RS00340	COG0493	'glutamate synthase
AMD13_RS00355	COG0069	glutamate synthase activity
AMD13_RS00355	COG0070	glutamate synthase
AMD13_RS00355	COG0067	glutamate synthase
AMD13_RS00365	COG0069	glutamate synthase activity
AMD13_RS00365	COG0070	glutamate synthase
AMD13_RS00365	COG0067	glutamate synthase
AMD13_RS00465	COG0367	asparagine synthase
AMD13_RS00485	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AMD13_RS00495	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMD13_RS00500	COG0187	DNA topoisomerase II activity
AMD13_RS00510	COG0501	Belongs to the peptidase M48B family
AMD13_RS00540	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AMD13_RS00550	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD13_RS00595	COG0793	Belongs to the peptidase S41A family
AMD13_RS00600	COG4942	peptidase
AMD13_RS00610	COG2234	aminopeptidase activity
AMD13_RS00620	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD13_RS00625	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD13_RS00630	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD13_RS00635	COG1064	alcohol dehydrogenase
AMD13_RS00640	COG0493	'glutamate synthase
AMD13_RS00645	COG0070	glutamate synthase
AMD13_RS00645	COG0067	glutamate synthase
AMD13_RS00645	COG0069	glutamate synthase activity
AMD13_RS00690	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AMD13_RS00705	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
AMD13_RS00710	COG0297	glycogen (starch) synthase activity
AMD13_RS00710	COG0438	transferase activity, transferring glycosyl groups
AMD13_RS00730	COG0367	asparagine synthase
AMD13_RS00760	COG1132	(ABC) transporter
AMD13_RS00790	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AMD13_RS00870	COG1205	dead DEAH box helicase
AMD13_RS00870	COG1111	helicase
AMD13_RS00875	COG1272	protein, Hemolysin III
AMD13_RS00890	COG0300	oxidoreductase activity
AMD13_RS00895	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS00915	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMD13_RS00975	COG3237	CsbD-like
AMD13_RS01025	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD13_RS01035	COG0477	Major facilitator Superfamily
AMD13_RS01075	COG0714	Associated with various cellular activities
AMD13_RS01105	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AMD13_RS01115	COG4772	TonB-dependent receptor
AMD13_RS01125	COG0662	Cupin 2, conserved barrel domain protein
AMD13_RS01130	COG1012	belongs to the aldehyde dehydrogenase family
AMD13_RS01155	COG1304	FMN binding
AMD13_RS01170	COG4585	Histidine kinase
AMD13_RS01175	COG2197	response regulator
AMD13_RS01195	COG3710	Transcriptional regulator
AMD13_RS01200	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMD13_RS01270	COG2801	Transposase and inactivated derivatives
AMD13_RS01275	COG0366	Alpha amylase catalytic
AMD13_RS01280	COG0366	Alpha amylase catalytic
AMD13_RS01285	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMD13_RS01305	COG2755	lipolytic protein G-D-S-L family
AMD13_RS01305	COG0657	acetylesterase activity
AMD13_RS01315	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMD13_RS01330	COG3507	Belongs to the glycosyl hydrolase 43 family
AMD13_RS01335	COG1609	Transcriptional regulator
AMD13_RS01340	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
AMD13_RS01345	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS01355	COG2755	lipolytic protein G-D-S-L family
AMD13_RS01370	COG3186	Phenylalanine-4-hydroxylase
AMD13_RS01375	COG1522	sequence-specific DNA binding
AMD13_RS01385	COG1752	Esterase of the alpha-beta hydrolase superfamily
AMD13_RS01395	COG1119	ATPase activity
AMD13_RS01410	COG1125	glycine betaine transport
AMD13_RS01425	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AMD13_RS01445	COG1396	sequence-specific DNA binding
AMD13_RS01470	COG0489	protein tyrosine kinase activity
AMD13_RS01475	COG2062	phosphohistidine phosphatase, SixA
AMD13_RS01485	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD13_RS01530	COG1968	undecaprenyl-diphosphatase activity
AMD13_RS01535	COG0174	glutamine synthetase
AMD13_RS01540	COG0347	Belongs to the P(II) protein family
AMD13_RS01545	COG0004	ammonium transporteR
AMD13_RS01550	COG3852	Histidine kinase
AMD13_RS01555	COG2204	response regulator
AMD13_RS01560	COG2032	superoxide dismutase activity
AMD13_RS01565	COG2032	superoxide dismutase activity
AMD13_RS01570	COG0346	lactoylglutathione lyase activity
AMD13_RS01580	COG0183	Belongs to the thiolase family
AMD13_RS01615	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMD13_RS01620	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AMD13_RS01625	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AMD13_RS01635	COG0028	Belongs to the TPP enzyme family
AMD13_RS01640	COG2205	protein histidine kinase activity
AMD13_RS01665	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AMD13_RS01680	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD13_RS01690	COG0596	Alpha beta hydrolase
AMD13_RS01695	COG0727	PFAM Uncharacterised protein family (UPF0153)
AMD13_RS01700	COG0318	PFAM AMP-dependent synthetase and ligase
AMD13_RS01705	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMD13_RS01720	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMD13_RS01730	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMD13_RS01740	COG0564	pseudouridine synthase activity
AMD13_RS01765	COG0339	signal peptide processing
AMD13_RS01795	COG0475	glutathione-regulated potassium exporter activity
AMD13_RS01800	COG0583	DNA-binding transcription factor activity
AMD13_RS01805	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AMD13_RS01810	COG2224	Isocitrate lyase
AMD13_RS01840	COG4770	biotin carboxylase activity
AMD13_RS01845	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMD13_RS01850	COG1960	acyl-CoA dehydrogenase activity
AMD13_RS01905	COG0523	cobalamin synthesis protein
AMD13_RS01920	COG0697	spore germination
AMD13_RS01930	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMD13_RS01935	COG1846	Transcriptional regulator
AMD13_RS01940	COG1764	response to oxidative stress
AMD13_RS01970	COG2130	NADP-dependent
AMD13_RS01985	COG1187	pseudouridine synthase activity
AMD13_RS02000	COG1643	Atp-dependent helicase
AMD13_RS02010	COG4807	Protein conserved in bacteria
AMD13_RS02015	COG2351	hydroxyisourate hydrolase activity
AMD13_RS02020	COG2072	flavoprotein involved in K transport
AMD13_RS02040	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AMD13_RS02075	COG1957	nucleoside hydrolase
AMD13_RS02085	COG2252	PERMEase
AMD13_RS02110	COG0084	hydrolase, TatD family'
AMD13_RS02125	COG0583	DNA-binding transcription factor activity
AMD13_RS02130	COG2814	Major facilitator Superfamily
AMD13_RS02145	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AMD13_RS02150	COG1902	pentaerythritol trinitrate reductase activity
AMD13_RS02170	COG0745	RESPONSE REGULATOR receiver
AMD13_RS02175	COG2205	protein histidine kinase activity
AMD13_RS02180	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD13_RS02200	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMD13_RS02205	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMD13_RS02210	COG0583	DNA-binding transcription factor activity
AMD13_RS02240	COG0702	epimerase
AMD13_RS02245	COG1733	regulation of RNA biosynthetic process
AMD13_RS02270	COG2801	Transposase and inactivated derivatives
AMD13_RS02285	COG0129	dihydroxy-acid dehydratase activity
AMD13_RS02305	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AMD13_RS02360	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AMD13_RS02365	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMD13_RS02390	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AMD13_RS02395	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AMD13_RS02405	COG3485	protocatechuate 3,4-dioxygenase
AMD13_RS02410	COG3485	protocatechuate 3,4-dioxygenase
AMD13_RS02420	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMD13_RS02425	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMD13_RS02435	COG1414	Transcriptional regulator
AMD13_RS02445	COG0657	acetylesterase activity
AMD13_RS02455	COG0445	tRNA wobble uridine modification
AMD13_RS02465	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMD13_RS02495	COG2267	carboxylic ester hydrolase activity
AMD13_RS02505	COG0156	8-amino-7-oxononanoate synthase activity
AMD13_RS02510	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AMD13_RS02515	COG1040	competence protein
AMD13_RS02520	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMD13_RS02595	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMD13_RS02665	COG3264	Mechanosensitive ion channel
AMD13_RS02665	COG1511	domain protein
AMD13_RS02670	COG1368	sulfuric ester hydrolase activity
AMD13_RS02675	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMD13_RS02680	COG2354	Protein conserved in bacteria
AMD13_RS02690	COG0297	glycogen (starch) synthase activity
AMD13_RS02695	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMD13_RS02700	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMD13_RS02725	COG0702	epimerase
AMD13_RS02730	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS02765	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD13_RS02770	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS02780	COG0513	Belongs to the DEAD box helicase family
AMD13_RS02800	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AMD13_RS02810	COG3483	tryptophan 2,3-dioxygenase activity
AMD13_RS02815	COG3104	oligopeptide transport
AMD13_RS02835	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AMD13_RS02850	COG1320	monovalent cation:proton antiporter activity
AMD13_RS02855	COG2212	antiporter activity
AMD13_RS02865	COG0651	ATP synthesis coupled electron transport
AMD13_RS02870	COG1006	Multisubunit Na H antiporter MnhC subunit
AMD13_RS02875	COG2111	Na H antiporter
AMD13_RS02875	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMD13_RS02900	COG3179	chitinase
AMD13_RS02920	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AMD13_RS02925	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AMD13_RS02940	COG0456	acetyltransferase
AMD13_RS02945	COG1597	lipid kinase activity
AMD13_RS02970	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMD13_RS02975	COG0134	indole-3-glycerol-phosphate synthase activity
AMD13_RS02985	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD13_RS02990	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
AMD13_RS03000	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
AMD13_RS03010	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AMD13_RS03025	COG1051	belongs to the nudix hydrolase family
AMD13_RS03065	COG0316	Belongs to the HesB IscA family
AMD13_RS03090	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AMD13_RS03110	COG2814	Major facilitator Superfamily
AMD13_RS03115	COG0583	DNA-binding transcription factor activity
AMD13_RS03120	COG2814	Major facilitator Superfamily
AMD13_RS03125	COG1289	transmembrane transporter activity
AMD13_RS03135	COG0151	Belongs to the GarS family
AMD13_RS03145	COG0138	bifunctional purine biosynthesis protein purh
AMD13_RS03150	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMD13_RS03155	COG2267	carboxylic ester hydrolase activity
AMD13_RS03160	COG0671	phosphoesterase, PA-phosphatase related
AMD13_RS03160	COG2453	phosphatase
AMD13_RS03185	COG4589	Belongs to the CDS family
AMD13_RS03190	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AMD13_RS03215	COG2264	protein methyltransferase activity
AMD13_RS03230	COG0439	Biotin carboxylase
AMD13_RS03240	COG0511	ligase activity, forming carbon-carbon bonds
AMD13_RS03245	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AMD13_RS03255	COG1324	tolerance protein
AMD13_RS03280	COG0300	oxidoreductase activity
AMD13_RS03285	COG2356	endonuclease I
AMD13_RS03295	COG0459	protein refolding
AMD13_RS03310	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AMD13_RS03325	COG3386	PFAM SMP-30 Gluconolaconase
AMD13_RS03335	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AMD13_RS03340	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AMD13_RS03360	COG0778	Nitroreductase
AMD13_RS03365	COG2353	YceI-like domain
AMD13_RS03395	COG3052	prosthetic group binding
AMD13_RS03420	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMD13_RS03430	COG1802	Transcriptional regulator
AMD13_RS03475	COG2801	Transposase and inactivated derivatives
AMD13_RS03485	COG4221	oxidoreductase activity
AMD13_RS03500	COG4221	oxidoreductase activity
AMD13_RS03510	COG0435	Glutathione S-transferase
AMD13_RS03535	COG2409	Drug exporters of the RND superfamily
AMD13_RS03540	COG0823	Involved in the tonB-independent uptake of proteins
AMD13_RS03540	COG1506	peptidase
AMD13_RS03580	COG0697	spore germination
AMD13_RS03595	COG1113	amino acid transport
AMD13_RS03615	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
AMD13_RS03650	COG5001	Diguanylate cyclase
AMD13_RS03655	COG0840	transmembrane signaling receptor activity
AMD13_RS03660	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD13_RS03660	COG5297	Belongs to the glycosyl hydrolase family 6
AMD13_RS03665	COG0659	secondary active sulfate transmembrane transporter activity
AMD13_RS03685	COG2943	transferase activity, transferring hexosyl groups
AMD13_RS03695	COG3275	phosphorelay sensor kinase activity
AMD13_RS03705	COG0181	hydroxymethylbilane synthase activity
AMD13_RS03730	COG1505	serine-type exopeptidase activity
AMD13_RS03735	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMD13_RS03740	COG0436	Aminotransferase
AMD13_RS03750	COG2832	Protein of unknown function (DUF454)
AMD13_RS03760	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMD13_RS03770	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AMD13_RS03775	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AMD13_RS03780	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AMD13_RS03805	COG2226	methyltransferase
AMD13_RS03810	COG5001	Diguanylate cyclase
AMD13_RS03810	COG3300	MHYT domain
AMD13_RS03815	COG0308	aminopeptidase N
AMD13_RS03865	COG3284	Transcriptional regulator
AMD13_RS03870	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD13_RS03875	COG1077	Cell shape determining protein MreB Mrl
AMD13_RS03880	COG1792	Involved in formation and maintenance of cell shape
AMD13_RS03895	COG0772	Belongs to the SEDS family
AMD13_RS03905	COG2951	lytic endotransglycosylase activity
AMD13_RS03910	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMD13_RS03920	COG1686	Belongs to the peptidase S11 family
AMD13_RS03930	COG2921	Belongs to the UPF0250 family
AMD13_RS03935	COG0321	lipoyl(octanoyl) transferase activity
AMD13_RS03940	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMD13_RS03955	COG0583	DNA-binding transcription factor activity
AMD13_RS03965	COG1051	belongs to the nudix hydrolase family
AMD13_RS03965	COG1056	cytidyltransferase-related domain
AMD13_RS04000	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
AMD13_RS04005	COG0673	inositol 2-dehydrogenase activity
AMD13_RS04010	COG2823	Periplasmic or secreted lipoprotein
AMD13_RS04015	COG4251	negative regulation of phosphorylation
AMD13_RS04020	COG0784	Response regulator, receiver
AMD13_RS04025	COG4191	Histidine kinase
AMD13_RS04030	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AMD13_RS04085	COG1459	type II secretion system
AMD13_RS04150	COG2188	Transcriptional regulator
AMD13_RS04160	COG1609	Transcriptional regulator
AMD13_RS04165	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMD13_RS04170	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AMD13_RS04180	COG0617	tRNA 3'-terminal CCA addition
AMD13_RS04185	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
AMD13_RS04190	COG1012	belongs to the aldehyde dehydrogenase family
AMD13_RS04195	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMD13_RS04205	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMD13_RS04220	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AMD13_RS04225	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMD13_RS04240	COG2205	protein histidine kinase activity
AMD13_RS04270	COG3791	Glutathione-dependent formaldehyde-activating
AMD13_RS04285	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMD13_RS04295	COG0697	spore germination
AMD13_RS04305	COG0488	(ABC) transporter
AMD13_RS04315	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMD13_RS04320	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AMD13_RS04330	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMD13_RS04330	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMD13_RS04350	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AMD13_RS04355	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMD13_RS04360	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AMD13_RS04380	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AMD13_RS04385	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AMD13_RS04390	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
AMD13_RS04395	COG2205	protein histidine kinase activity
AMD13_RS04400	COG0745	RESPONSE REGULATOR receiver
AMD13_RS04415	COG0277	FAD linked oxidase domain protein
AMD13_RS04420	COG1988	membrane-bound metal-dependent
AMD13_RS04425	COG0792	nuclease activity
AMD13_RS04455	COG0275	rRNA processing
AMD13_RS04460	COG3116	cell division
AMD13_RS04470	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMD13_RS04475	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMD13_RS04480	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMD13_RS04490	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AMD13_RS04495	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMD13_RS04500	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMD13_RS04505	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AMD13_RS04520	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AMD13_RS04530	COG0739	heme binding
AMD13_RS04535	COG0653	protein targeting
AMD13_RS04540	COG0494	nUDIX hydrolase
AMD13_RS04550	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMD13_RS04560	COG3321	synthase
AMD13_RS04560	COG0604	alcohol dehydrogenase
AMD13_RS04560	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS04580	COG0366	Alpha amylase catalytic
AMD13_RS04610	COG2226	methyltransferase
AMD13_RS04615	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AMD13_RS04625	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AMD13_RS04660	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AMD13_RS04670	COG4106	trans-aconitate 2-methyltransferase activity
AMD13_RS04675	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMD13_RS04685	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD13_RS04690	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AMD13_RS04695	COG0667	Aldo Keto reductase
AMD13_RS04705	COG4771	TonB-dependent receptor
AMD13_RS04725	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMD13_RS04730	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AMD13_RS04740	COG2175	clavaminate synthase activity
AMD13_RS04750	COG4181	ATPase activity
AMD13_RS04765	COG0642	Histidine kinase
AMD13_RS04775	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AMD13_RS04795	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AMD13_RS04800	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMD13_RS04815	COG3829	transcription factor binding
AMD13_RS04825	COG1116	anion transmembrane transporter activity
AMD13_RS04830	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMD13_RS04840	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMD13_RS04845	COG0431	NADPH-dependent FMN reductase
AMD13_RS04870	COG0747	negative chemotaxis
AMD13_RS04880	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMD13_RS04890	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMD13_RS04895	COG2967	ApaG domain
AMD13_RS04900	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMD13_RS04905	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AMD13_RS04910	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMD13_RS04915	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AMD13_RS04925	COG0123	including yeast histone deacetylase and acetoin utilization protein
AMD13_RS04930	COG2096	Adenosyltransferase
AMD13_RS04940	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD13_RS04945	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD13_RS04975	COG3384	dioxygenase
AMD13_RS04980	COG0583	DNA-binding transcription factor activity
AMD13_RS04995	COG1024	Enoyl-CoA hydratase
AMD13_RS05015	COG3386	PFAM SMP-30 Gluconolaconase
AMD13_RS05025	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
AMD13_RS05050	COG0697	spore germination
AMD13_RS05060	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMD13_RS05080	COG2205	protein histidine kinase activity
AMD13_RS05080	COG5002	protein histidine kinase activity
AMD13_RS05080	COG0784	Response regulator, receiver
AMD13_RS05085	COG2197	response regulator
AMD13_RS05095	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMD13_RS05105	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AMD13_RS05110	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMD13_RS05115	COG0583	DNA-binding transcription factor activity
AMD13_RS05120	COG3634	alkyl hydroperoxide reductase activity
AMD13_RS05130	COG2890	protein-(glutamine-N5) methyltransferase activity
AMD13_RS05150	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMD13_RS05150	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMD13_RS05180	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AMD13_RS05210	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AMD13_RS05225	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMD13_RS05230	COG1404	Belongs to the peptidase S8 family
AMD13_RS05235	COG1404	Belongs to the peptidase S8 family
AMD13_RS05240	COG1404	Belongs to the peptidase S8 family
AMD13_RS05245	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AMD13_RS05270	COG1295	ribonuclease BN
AMD13_RS05275	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD13_RS05280	COG1254	Belongs to the acylphosphatase family
AMD13_RS05295	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMD13_RS05305	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AMD13_RS05310	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AMD13_RS05320	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AMD13_RS05325	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AMD13_RS05335	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMD13_RS05340	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AMD13_RS05345	COG0193	aminoacyl-tRNA hydrolase activity
AMD13_RS05350	COG0012	GTP binding
AMD13_RS05370	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMD13_RS05385	COG0250	Participates in transcription elongation, termination and antitermination
AMD13_RS05390	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMD13_RS05395	COG0081	regulation of translation
AMD13_RS05400	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AMD13_RS05405	COG0222	ribosome binding
AMD13_RS05410	COG0085	RNA polymerase activity
AMD13_RS05415	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AMD13_RS05420	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AMD13_RS05425	COG0049	tRNA binding
AMD13_RS05430	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMD13_RS05435	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMD13_RS05440	COG0051	transcription antitermination factor activity, RNA binding
AMD13_RS05445	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AMD13_RS05450	COG0088	Forms part of the polypeptide exit tunnel
AMD13_RS05455	COG0089	rRNA binding
AMD13_RS05460	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AMD13_RS05465	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AMD13_RS05475	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AMD13_RS05480	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AMD13_RS05485	COG0255	Belongs to the universal ribosomal protein uL29 family
AMD13_RS05490	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AMD13_RS05500	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AMD13_RS05505	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AMD13_RS05515	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AMD13_RS05520	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AMD13_RS05525	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AMD13_RS05535	COG1841	ribosomal large subunit assembly
AMD13_RS05540	COG0200	Binds to the 23S rRNA
AMD13_RS05545	COG0201	protein transport
AMD13_RS05570	COG0203	ribosomal protein L17
AMD13_RS05575	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AMD13_RS05590	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
AMD13_RS05600	COG0154	amidase activity
AMD13_RS05610	COG1217	gtp-binding protein TYPA
AMD13_RS05615	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMD13_RS05620	COG0039	L-malate dehydrogenase activity
AMD13_RS05625	COG0625	glutathione transferase activity
AMD13_RS05635	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMD13_RS05635	COG1902	pentaerythritol trinitrate reductase activity
AMD13_RS05640	COG0604	alcohol dehydrogenase
AMD13_RS05665	COG0156	8-amino-7-oxononanoate synthase activity
AMD13_RS05670	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AMD13_RS05675	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AMD13_RS05680	COG4208	sulfate ABC transporter
AMD13_RS05685	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AMD13_RS05695	COG1063	alcohol dehydrogenase
AMD13_RS05725	COG0406	alpha-ribazole phosphatase activity
AMD13_RS05730	COG0285	dihydrofolate synthase activity
AMD13_RS05750	COG2833	Protein of unknown function (DUF455)
AMD13_RS05760	COG3291	Pkd domain containing protein
AMD13_RS05770	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD13_RS05775	COG0671	phosphoesterase, PA-phosphatase related
AMD13_RS05780	COG0438	transferase activity, transferring glycosyl groups
AMD13_RS05790	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AMD13_RS05805	COG4783	chaperone-mediated protein folding
AMD13_RS05820	COG0473	3-isopropylmalate dehydrogenase activity
AMD13_RS05950	COG2801	Transposase and inactivated derivatives
AMD13_RS05965	COG3852	Histidine kinase
AMD13_RS05975	COG0544	peptidyl-prolyl cis-trans isomerase activity
AMD13_RS05985	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AMD13_RS06015	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMD13_RS06025	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD13_RS06035	COG0328	RNA-DNA hybrid ribonuclease activity
AMD13_RS06040	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMD13_RS06045	COG0631	protein serine/threonine phosphatase activity
AMD13_RS06060	COG0859	PFAM glycosyl transferase family 9
AMD13_RS06065	COG3642	lipopolysaccharide core region biosynthetic process
AMD13_RS06070	COG1234	tRNA 3'-trailer cleavage
AMD13_RS06075	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMD13_RS06085	COG0315	cyclic pyranopterin monophosphate synthase activity
AMD13_RS06090	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AMD13_RS06095	COG0314	molybdopterin synthase activity
AMD13_RS06150	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AMD13_RS06155	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AMD13_RS06160	COG0537	adenosine 5'-monophosphoramidase activity
AMD13_RS06180	COG0714	Associated with various cellular activities
AMD13_RS06200	COG0424	maF-like protein
AMD13_RS06205	COG1399	metal-binding, possibly nucleic acid-binding protein
AMD13_RS06210	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AMD13_RS06215	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD13_RS06230	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS06245	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AMD13_RS06250	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMD13_RS06275	COG3829	transcription factor binding
AMD13_RS06295	COG3609	addiction module antidote protein, CC2985 family
AMD13_RS06315	COG2373	Large extracellular alpha-helical protein
AMD13_RS06330	COG4953	penicillin-binding protein 1C
AMD13_RS06340	COG0678	peroxiredoxin activity
AMD13_RS06360	COG0330	HflC and HflK could
AMD13_RS06365	COG0330	HflC and HflK could
AMD13_RS06375	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AMD13_RS06380	COG0308	aminopeptidase N
AMD13_RS06390	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS06395	COG1309	transcriptional regulator
AMD13_RS06465	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMD13_RS06475	COG3387	PFAM Glycoside hydrolase 15-related
AMD13_RS06480	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS06485	COG3537	Alpha-1,2-mannosidase
AMD13_RS06505	COG0492	ferredoxin-NADP+ reductase activity
AMD13_RS06530	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMD13_RS06535	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AMD13_RS06540	COG2080	2 iron, 2 sulfur cluster binding
AMD13_RS06575	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMD13_RS06590	COG0587	DNA-directed DNA polymerase activity
AMD13_RS06605	COG1297	OPT oligopeptide transporter protein
AMD13_RS06620	COG1506	peptidase
AMD13_RS06620	COG0823	Involved in the tonB-independent uptake of proteins
AMD13_RS06635	COG2207	Transcriptional regulator
AMD13_RS06635	COG1917	Cupin 2, conserved barrel domain protein
AMD13_RS06650	COG0753	catalase activity
AMD13_RS06655	COG0656	L-ascorbic acid biosynthetic process
AMD13_RS06665	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMD13_RS06665	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMD13_RS06670	COG2814	Major facilitator Superfamily
AMD13_RS06685	COG2194	sulfuric ester hydrolase activity
AMD13_RS06700	COG0745	RESPONSE REGULATOR receiver
AMD13_RS06705	COG0642	Histidine kinase
AMD13_RS06715	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AMD13_RS06720	COG2894	cell division
AMD13_RS06725	COG0850	regulation of cytokinetic process
AMD13_RS06740	COG4585	Histidine kinase
AMD13_RS06745	COG2197	response regulator
AMD13_RS06760	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
AMD13_RS06785	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AMD13_RS06795	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AMD13_RS06815	COG1946	Acyl-CoA thioesterase
AMD13_RS06830	COG0824	Thioesterase
AMD13_RS06835	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AMD13_RS06840	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AMD13_RS06845	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AMD13_RS06850	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AMD13_RS06855	COG0268	Binds directly to 16S ribosomal RNA
AMD13_RS06865	COG0196	riboflavin kinase activity
AMD13_RS06870	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AMD13_RS06875	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AMD13_RS06880	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AMD13_RS06895	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMD13_RS06900	COG1845	cytochrome c oxidase, subunit III
AMD13_RS06905	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AMD13_RS06920	COG3152	Membrane
AMD13_RS06930	COG2207	Transcriptional regulator
AMD13_RS06935	COG0326	Molecular chaperone. Has ATPase activity
AMD13_RS06945	COG1366	Belongs to the anti-sigma-factor antagonist family
AMD13_RS06950	COG1366	Belongs to the anti-sigma-factor antagonist family
AMD13_RS06955	COG2172	sigma factor antagonist activity
AMD13_RS06980	COG4771	TonB-dependent receptor
AMD13_RS06990	COG5507	3-demethylubiquinone-9 3-methyltransferase
AMD13_RS06995	COG2205	protein histidine kinase activity
AMD13_RS07005	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMD13_RS07010	COG3437	response regulator, receiver
AMD13_RS07010	COG4999	Histidine kinase
AMD13_RS07010	COG2205	protein histidine kinase activity
AMD13_RS07010	COG3850	Histidine kinase
AMD13_RS07015	COG4191	Histidine kinase
AMD13_RS07015	COG0784	Response regulator, receiver
AMD13_RS07045	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMD13_RS07050	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMD13_RS07060	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMD13_RS07065	COG0228	four-way junction DNA binding
AMD13_RS07070	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AMD13_RS07075	COG0336	Belongs to the RNA methyltransferase TrmD family
AMD13_RS07080	COG0335	large ribosomal subunit rRNA binding
AMD13_RS07110	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
AMD13_RS07120	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AMD13_RS07130	COG3209	COG3209 Rhs family protein
AMD13_RS07150	COG3250	beta-galactosidase activity
AMD13_RS07155	COG3867	Arabinogalactan endo-beta-1,4-galactanase
AMD13_RS07175	COG1960	acyl-CoA dehydrogenase activity
AMD13_RS07180	COG1024	Enoyl-CoA hydratase
AMD13_RS07200	COG1024	Enoyl-CoA hydratase
AMD13_RS07200	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMD13_RS07215	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMD13_RS07220	COG0481	GTPase activity
AMD13_RS07235	COG0571	ribonuclease III activity
AMD13_RS07240	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AMD13_RS07245	COG1381	Involved in DNA repair and RecF pathway recombination
AMD13_RS07255	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMD13_RS07260	COG2954	triphosphatase activity
AMD13_RS07265	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AMD13_RS07270	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
AMD13_RS07275	COG3046	protein related to deoxyribodipyrimidine photolyase
AMD13_RS07280	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD13_RS07285	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
AMD13_RS07290	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AMD13_RS07295	COG1278	Cold shock
AMD13_RS07300	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD13_RS07310	COG1201	RNA secondary structure unwinding
AMD13_RS07315	COG1793	dna ligase
AMD13_RS07325	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMD13_RS07325	COG1793	dna ligase
AMD13_RS07355	COG0183	Belongs to the thiolase family
AMD13_RS07375	COG1451	nucleotide metabolic process
AMD13_RS07380	COG5487	UPF0391 membrane protein
AMD13_RS07390	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMD13_RS07410	COG1077	Cell shape determining protein MreB Mrl
AMD13_RS07415	COG1047	Peptidyl-prolyl cis-trans
AMD13_RS07425	COG2824	Alkylphosphonate utilization operon protein PhnA
AMD13_RS07430	COG1902	pentaerythritol trinitrate reductase activity
AMD13_RS07435	COG2814	Major facilitator Superfamily
AMD13_RS07470	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
AMD13_RS07470	COG0392	lysyltransferase activity
AMD13_RS07480	COG0251	oxidation-reduction process
AMD13_RS07485	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMD13_RS07500	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMD13_RS07525	COG1595	DNA-templated transcription, initiation
AMD13_RS07545	COG2878	Part of a membrane complex involved in electron transport
AMD13_RS07555	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD13_RS07555	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD13_RS07570	COG1131	(ABC) transporter
AMD13_RS07575	COG0346	lactoylglutathione lyase activity
AMD13_RS07580	COG0833	amino acid
AMD13_RS07585	COG2040	homocysteine
AMD13_RS07595	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AMD13_RS07615	COG1695	Transcriptional regulator
AMD13_RS07635	COG1981	membrane
AMD13_RS07650	COG0825	malonyl-CoA metabolic process
AMD13_RS07660	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AMD13_RS07665	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD13_RS07670	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD13_RS07675	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD13_RS07680	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD13_RS07695	COG0750	zinc metalloprotease
AMD13_RS07700	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
AMD13_RS07705	COG0575	Belongs to the CDS family
AMD13_RS07710	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AMD13_RS07715	COG0233	cytoplasmic translational termination
AMD13_RS07720	COG0528	UMP kinase activity
AMD13_RS07730	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AMD13_RS07735	COG0052	Belongs to the universal ribosomal protein uS2 family
AMD13_RS07775	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
AMD13_RS07785	COG1393	Belongs to the ArsC family
AMD13_RS07790	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD13_RS07795	COG0367	asparagine synthase
AMD13_RS07805	COG4774	siderophore transport
AMD13_RS07825	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMD13_RS07855	COG1566	PFAM secretion protein HlyD family protein
AMD13_RS07860	COG2814	Major facilitator Superfamily
AMD13_RS07910	COG0339	signal peptide processing
AMD13_RS07915	COG0386	Belongs to the glutathione peroxidase family
AMD13_RS07970	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AMD13_RS07975	COG0084	hydrolase, TatD family'
AMD13_RS07990	COG1960	acyl-CoA dehydrogenase activity
AMD13_RS08010	COG0367	asparagine synthase
AMD13_RS08020	COG0305	Participates in initiation and elongation during chromosome replication
AMD13_RS08025	COG0415	Belongs to the DNA photolyase family
AMD13_RS08035	COG0583	DNA-binding transcription factor activity
AMD13_RS08080	COG3706	GGDEF domain
AMD13_RS08185	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AMD13_RS08200	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD13_RS08210	COG0497	DNA recombination
AMD13_RS08215	COG1420	regulation of RNA biosynthetic process
AMD13_RS08220	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AMD13_RS08225	COG0443	Heat shock 70 kDa protein
AMD13_RS08230	COG0484	heat shock protein binding
AMD13_RS08235	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
AMD13_RS08265	COG0583	DNA-binding transcription factor activity
AMD13_RS08270	COG1132	(ABC) transporter
AMD13_RS08305	COG2850	peptidyl-arginine hydroxylation
AMD13_RS08325	COG1253	flavin adenine dinucleotide binding
AMD13_RS08355	COG1131	(ABC) transporter
AMD13_RS08360	COG1725	Transcriptional regulator
AMD13_RS08365	COG0386	Belongs to the glutathione peroxidase family
AMD13_RS08380	COG2900	Belongs to the SlyX family
AMD13_RS08405	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD13_RS08415	COG1410	methionine synthase
AMD13_RS08415	COG0646	methionine synthase
AMD13_RS08420	COG1410	methionine synthase
AMD13_RS08420	COG0646	methionine synthase
AMD13_RS08425	COG2226	methyltransferase
AMD13_RS08430	COG1960	acyl-CoA dehydrogenase activity
AMD13_RS08445	COG0557	exoribonuclease II activity
AMD13_RS08455	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMD13_RS08465	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMD13_RS08475	COG0704	Plays a role in the regulation of phosphate uptake
AMD13_RS08480	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMD13_RS08485	COG0581	inorganic phosphate transmembrane transporter activity
AMD13_RS08490	COG0573	inorganic phosphate transmembrane transporter activity
AMD13_RS08495	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AMD13_RS08520	COG0659	secondary active sulfate transmembrane transporter activity
AMD13_RS08525	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AMD13_RS08535	COG1024	Enoyl-CoA hydratase
AMD13_RS08545	COG0494	nUDIX hydrolase
AMD13_RS08580	COG0488	(ABC) transporter
AMD13_RS08585	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMD13_RS08585	COG0116	Belongs to the methyltransferase superfamily
AMD13_RS08590	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMD13_RS08615	COG2925	Exonuclease
AMD13_RS08620	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD13_RS08625	COG3844	kynureninase activity
AMD13_RS08635	COG0662	Cupin 2, conserved barrel domain protein
AMD13_RS08640	COG0288	reversible hydration of carbon dioxide
AMD13_RS08700	COG2808	Putative FMN-binding domain
AMD13_RS08720	COG0017	Asparaginyl-tRNA synthetase
AMD13_RS08725	COG0316	Belongs to the HesB IscA family
AMD13_RS08730	COG0360	Binds together with S18 to 16S ribosomal RNA
AMD13_RS08735	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AMD13_RS08740	COG0359	binds to the 23S rRNA
AMD13_RS08750	COG3115	cell septum assembly
AMD13_RS08760	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMD13_RS08765	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMD13_RS08770	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AMD13_RS08780	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
AMD13_RS08800	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AMD13_RS08810	COG2986	histidine ammonia-lyase
AMD13_RS08815	COG1228	amidohydrolase
AMD13_RS08860	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AMD13_RS08865	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AMD13_RS08870	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMD13_RS08875	COG0077	Prephenate dehydratase
AMD13_RS08875	COG1605	Chorismate mutase
AMD13_RS08880	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMD13_RS08895	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AMD13_RS08900	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AMD13_RS08905	COG0583	DNA-binding transcription factor activity
AMD13_RS08940	COG2801	Transposase and inactivated derivatives
AMD13_RS08960	COG0840	transmembrane signaling receptor activity
AMD13_RS08995	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
AMD13_RS09000	COG4191	Histidine kinase
AMD13_RS09000	COG0784	Response regulator, receiver
AMD13_RS09015	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD13_RS09025	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMD13_RS09035	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMD13_RS09050	COG1595	DNA-templated transcription, initiation
AMD13_RS09105	COG2244	polysaccharide biosynthetic process
AMD13_RS09135	COG2264	protein methyltransferase activity
AMD13_RS09145	COG0438	transferase activity, transferring glycosyl groups
AMD13_RS09160	COG1136	(ABC) transporter
AMD13_RS09170	COG0477	Major facilitator Superfamily
AMD13_RS09175	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMD13_RS09190	COG1253	flavin adenine dinucleotide binding
AMD13_RS09200	COG0306	phosphate transporter
AMD13_RS09225	COG0504	CTP synthase activity
AMD13_RS09230	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AMD13_RS09240	COG0148	phosphopyruvate hydratase activity
AMD13_RS09245	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AMD13_RS09250	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
AMD13_RS09255	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AMD13_RS09260	COG0585	pseudouridine synthase activity
AMD13_RS09265	COG2840	Smr protein MutS2
AMD13_RS09270	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AMD13_RS09275	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMD13_RS09280	COG1238	metal cluster binding
AMD13_RS09295	COG1534	Rna-binding protein
AMD13_RS09300	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AMD13_RS09310	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AMD13_RS09315	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMD13_RS09325	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AMD13_RS09330	COG1546	Belongs to the CinA family
AMD13_RS09340	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMD13_RS09345	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMD13_RS09350	COG2137	regulation of response to DNA damage stimulus
AMD13_RS09355	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMD13_RS09360	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
AMD13_RS09375	COG1741	Belongs to the pirin family
AMD13_RS09385	COG0583	DNA-binding transcription factor activity
AMD13_RS09410	COG0351	phosphomethylpyrimidine kinase
AMD13_RS09410	COG0352	thiamine-phosphate diphosphorylase activity
AMD13_RS09425	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AMD13_RS09430	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMD13_RS09445	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMD13_RS09455	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AMD13_RS09460	COG3734	2-keto-3-deoxy-galactonokinase
AMD13_RS09470	COG4948	Mandelate Racemase Muconate Lactonizing
AMD13_RS09475	COG0800	Aldolase
AMD13_RS09515	COG1501	Belongs to the glycosyl hydrolase 31 family
AMD13_RS09525	COG1070	Carbohydrate kinase
AMD13_RS09530	COG2115	Belongs to the xylose isomerase family
AMD13_RS09535	COG0477	Major facilitator Superfamily
AMD13_RS09545	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMD13_RS09550	COG1469	GTP cyclohydrolase I activity
AMD13_RS09570	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AMD13_RS09575	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AMD13_RS09580	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
AMD13_RS09585	COG0166	Belongs to the GPI family
AMD13_RS09605	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD13_RS09615	COG4251	negative regulation of phosphorylation
AMD13_RS09615	COG3706	GGDEF domain
AMD13_RS09615	COG5001	Diguanylate cyclase
AMD13_RS09615	COG2203	Gaf domain
AMD13_RS09620	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD13_RS09625	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AMD13_RS09635	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AMD13_RS09640	COG0671	phosphoesterase, PA-phosphatase related
AMD13_RS09650	COG1794	racemase activity, acting on amino acids and derivatives
AMD13_RS09655	COG0697	spore germination
AMD13_RS09660	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMD13_RS09665	COG0167	dihydroorotate dehydrogenase activity
AMD13_RS09680	COG1012	belongs to the aldehyde dehydrogenase family
AMD13_RS09695	COG1215	transferase activity, transferring glycosyl groups
AMD13_RS09700	COG0726	polysaccharide deacetylase
AMD13_RS09700	COG1649	PFAM Uncharacterised BCR, COG1649
AMD13_RS09715	COG3210	domain, Protein
AMD13_RS09720	COG3210	domain, Protein
AMD13_RS09760	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD13_RS09765	COG0124	histidyl-tRNA synthetase
AMD13_RS09775	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AMD13_RS09780	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AMD13_RS09785	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMD13_RS09790	COG0131	Imidazoleglycerol-phosphate dehydratase
AMD13_RS09790	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMD13_RS09795	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AMD13_RS09800	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
AMD13_RS09805	COG0107	imidazoleglycerol-phosphate synthase activity
AMD13_RS09810	COG0140	phosphoribosyl-ATP diphosphatase activity
AMD13_RS09810	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMD13_RS09825	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
AMD13_RS09830	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
AMD13_RS09835	COG0235	Class ii aldolase
AMD13_RS09840	COG0531	amino acid
AMD13_RS09845	COG0531	amino acid
AMD13_RS09855	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMD13_RS09860	COG0277	FAD linked oxidase domain protein
AMD13_RS09880	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMD13_RS09925	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMD13_RS09930	COG2258	MOSC domain
AMD13_RS09935	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AMD13_RS09940	COG0505	Belongs to the CarA family
AMD13_RS09950	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AMD13_RS09955	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMD13_RS09965	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AMD13_RS10010	COG3279	Response regulator of the LytR AlgR family
AMD13_RS10015	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AMD13_RS10020	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AMD13_RS10030	COG2205	protein histidine kinase activity
AMD13_RS10030	COG2198	Histidine kinase
AMD13_RS10030	COG0784	Response regulator, receiver
AMD13_RS10035	COG1024	Enoyl-CoA hydratase
AMD13_RS10040	COG0318	PFAM AMP-dependent synthetase and ligase
AMD13_RS10070	COG2267	carboxylic ester hydrolase activity
AMD13_RS10080	COG2201	protein-glutamate methylesterase activity
AMD13_RS10085	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AMD13_RS10095	COG0840	transmembrane signaling receptor activity
AMD13_RS10100	COG0840	transmembrane signaling receptor activity
AMD13_RS10105	COG0840	transmembrane signaling receptor activity
AMD13_RS10115	COG0840	transmembrane signaling receptor activity
AMD13_RS10120	COG0840	transmembrane signaling receptor activity
AMD13_RS10125	COG0840	transmembrane signaling receptor activity
AMD13_RS10130	COG0840	transmembrane signaling receptor activity
AMD13_RS10145	COG0840	transmembrane signaling receptor activity
AMD13_RS10160	COG0840	transmembrane signaling receptor activity
AMD13_RS10165	COG2198	Histidine kinase
AMD13_RS10165	COG0643	Histidine kinase
AMD13_RS10170	COG0745	RESPONSE REGULATOR receiver
AMD13_RS10180	COG0835	chemotaxis
AMD13_RS10190	COG1360	Flagellar Motor Protein
AMD13_RS10195	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AMD13_RS10280	COG0641	radical SAM
AMD13_RS10295	COG0643	Histidine kinase
AMD13_RS10295	COG0784	Response regulator, receiver
AMD13_RS10295	COG2198	Histidine kinase
AMD13_RS10325	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMD13_RS10355	COG1684	flagellar biosynthetic protein fliR
AMD13_RS10370	COG3190	flagellar
AMD13_RS10420	COG1677	Flagellar hook-basal body complex protein FliE
AMD13_RS10450	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS10455	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS10460	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD13_RS10480	COG2201	protein-glutamate methylesterase activity
AMD13_RS10510	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AMD13_RS10515	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMD13_RS10520	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMD13_RS10530	COG1705	Flagellar rod assembly protein muramidase FlgJ
AMD13_RS10530	COG3951	Flagellar rod assembly protein muramidase FlgJ
AMD13_RS10535	COG1706	bacterial-type flagellum-dependent cell motility
AMD13_RS10540	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AMD13_RS10550	COG4787	bacterial-type flagellum-dependent cell motility
AMD13_RS10560	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AMD13_RS10565	COG1558	bacterial-type flagellum-dependent cell motility
AMD13_RS10575	COG0835	chemotaxis
AMD13_RS10575	COG0784	Response regulator, receiver
AMD13_RS10595	COG5002	protein histidine kinase activity
AMD13_RS10625	COG2915	High frequency lysogenization protein hflD homolog
AMD13_RS10630	COG0482	sulfurtransferase activity
AMD13_RS10645	COG0542	response to heat
AMD13_RS10655	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AMD13_RS10665	COG0492	ferredoxin-NADP+ reductase activity
AMD13_RS10670	COG1674	ftsk spoiiie
AMD13_RS10680	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AMD13_RS10690	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMD13_RS10695	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AMD13_RS10705	COG0183	Belongs to the thiolase family
AMD13_RS10710	COG1024	Enoyl-CoA hydratase
AMD13_RS10710	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMD13_RS10725	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AMD13_RS10735	COG1426	Protein conserved in bacteria
AMD13_RS10745	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD13_RS10750	COG1160	GTP binding
AMD13_RS10755	COG0303	'Molybdopterin
AMD13_RS10760	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMD13_RS10795	COG0708	Exodeoxyribonuclease III
AMD13_RS10805	COG0303	'Molybdopterin
AMD13_RS10810	COG0746	molybdenum cofactor guanylyltransferase activity
AMD13_RS10825	COG1914	H( )-stimulated, divalent metal cation uptake system
AMD13_RS10840	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AMD13_RS10845	COG0668	transmembrane transport
AMD13_RS10855	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AMD13_RS10870	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS10875	COG1183	phosphatidylcholine synthase activity
AMD13_RS10885	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMD13_RS10900	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD13_RS10900	COG0723	plastoquinol--plastocyanin reductase activity
AMD13_RS10910	COG2183	response to ionizing radiation
AMD13_RS10915	COG2205	protein histidine kinase activity
AMD13_RS10915	COG0784	Response regulator, receiver
AMD13_RS10980	COG0800	Aldolase
AMD13_RS10985	COG0129	dihydroxy-acid dehydratase activity
AMD13_RS10990	COG0363	glucosamine-6-phosphate deaminase activity
AMD13_RS10995	COG0837	glucose binding
AMD13_RS11000	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMD13_RS11020	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AMD13_RS11035	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AMD13_RS11040	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AMD13_RS11050	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMD13_RS11055	COG1136	(ABC) transporter
AMD13_RS11070	COG0811	peptide transport
AMD13_RS11080	COG1132	(ABC) transporter
AMD13_RS11085	COG1663	tetraacyldisaccharide 4'-kinase activity
AMD13_RS11090	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AMD13_RS11095	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMD13_RS11105	COG0322	excinuclease ABC activity
AMD13_RS11110	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMD13_RS11130	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMD13_RS11135	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMD13_RS11150	COG2801	Transposase and inactivated derivatives
AMD13_RS11165	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AMD13_RS11185	COG1054	Belongs to the UPF0176 family
AMD13_RS11195	COG1530	ribonuclease E activity
AMD13_RS11205	COG3064	Membrane
AMD13_RS11210	COG0428	transporter
AMD13_RS11220	COG2154	pterin-4-alpha-carbinolamine dehydratase
AMD13_RS11225	COG0316	Belongs to the HesB IscA family
AMD13_RS11225	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AMD13_RS11280	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS11315	COG1238	metal cluster binding
AMD13_RS11350	COG3279	Response regulator of the LytR AlgR family
AMD13_RS11395	COG4566	intracellular signal transduction
AMD13_RS11405	COG5001	Diguanylate cyclase
AMD13_RS11420	COG3685	Protein conserved in bacteria
AMD13_RS11435	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AMD13_RS11435	COG1648	precorrin-2 dehydrogenase activity
AMD13_RS11450	COG2814	Major facilitator Superfamily
AMD13_RS11470	COG1335	isochorismatase
AMD13_RS11485	COG2197	response regulator
AMD13_RS11505	COG0583	DNA-binding transcription factor activity
AMD13_RS11510	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMD13_RS11515	COG3002	Belongs to the UPF0753 family
AMD13_RS11530	COG1396	sequence-specific DNA binding
AMD13_RS11535	COG5489	Protein of unknown function (DUF736)
AMD13_RS11540	COG2003	Belongs to the UPF0758 family
AMD13_RS11565	COG0582	viral genome integration into host DNA
AMD13_RS11580	COG4774	siderophore transport
AMD13_RS11595	COG2336	PFAM SpoVT AbrB
AMD13_RS11620	COG4206	TonB-dependent receptor
AMD13_RS11640	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
AMD13_RS11640	COG2273	Hydrolase Family 16
AMD13_RS11660	COG2274	protein secretion by the type I secretion system
AMD13_RS11715	COG0270	DNA (cytosine-5-)-methyltransferase activity
AMD13_RS11765	COG4804	nuclease activity
AMD13_RS11785	COG5006	permease, DMT superfamily
AMD13_RS11800	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMD13_RS11810	COG3938	Belongs to the proline racemase family
AMD13_RS11825	COG2807	transmembrane transport
AMD13_RS11830	COG2207	Transcriptional regulator
AMD13_RS11980	COG0210	DNA helicase
AMD13_RS12060	COG2084	Dehydrogenase
AMD13_RS12080	COG2003	Belongs to the UPF0758 family
AMD13_RS12115	COG0582	viral genome integration into host DNA
AMD13_RS12120	COG0519	Catalyzes the synthesis of GMP from XMP
AMD13_RS12120	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMD13_RS12130	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AMD13_RS12140	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMD13_RS12140	COG0475	glutathione-regulated potassium exporter activity
AMD13_RS12145	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMD13_RS12155	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMD13_RS12160	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AMD13_RS12170	COG0776	regulation of translation
AMD13_RS12175	COG0539	negative regulation of cytoplasmic translation
AMD13_RS12180	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AMD13_RS12195	COG2957	Belongs to the agmatine deiminase family
AMD13_RS12200	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMD13_RS12225	COG0395	ABC-type sugar transport system, permease component
AMD13_RS12230	COG1175	transmembrane transport
AMD13_RS12260	COG2350	Protein conserved in bacteria
AMD13_RS12265	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AMD13_RS12270	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AMD13_RS12275	COG1187	pseudouridine synthase activity
AMD13_RS12295	COG0436	Aminotransferase
AMD13_RS12300	COG4133	protoheme IX ABC transporter activity
AMD13_RS12320	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMD13_RS12325	COG1138	Cytochrome C-type biogenesis protein
AMD13_RS12345	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMD13_RS12350	COG1278	Cold shock
AMD13_RS12355	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AMD13_RS12360	COG4988	ABC transporter
AMD13_RS12370	COG1294	oxidase, subunit
AMD13_RS12395	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AMD13_RS12400	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AMD13_RS12410	COG0165	Argininosuccinate lyase
AMD13_RS12415	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AMD13_RS12425	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMD13_RS12430	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD13_RS12440	COG0137	argininosuccinate synthase activity
AMD13_RS12445	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMD13_RS12455	COG0215	cysteine-tRNA ligase activity
AMD13_RS12460	COG2166	iron-sulfur cluster assembly
AMD13_RS12480	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AMD13_RS12485	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AMD13_RS12510	COG4302	ethanolamine ammonia-lyase activity
AMD13_RS12540	COG2963	transposase activity
AMD13_RS12560	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMD13_RS12565	COG0402	S-adenosylhomocysteine deaminase activity
AMD13_RS12575	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMD13_RS12580	COG1509	lysine 2,3-aminomutase activity
AMD13_RS12585	COG3300	MHYT domain
AMD13_RS12585	COG5001	Diguanylate cyclase
AMD13_RS12600	COG0483	inositol monophosphate 1-phosphatase activity
AMD13_RS12605	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMD13_RS12620	COG0488	(ABC) transporter
AMD13_RS12625	COG0513	Belongs to the DEAD box helicase family
AMD13_RS12630	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AMD13_RS12635	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AMD13_RS12645	COG0625	glutathione transferase activity
AMD13_RS12655	COG4681	YaeQ
AMD13_RS12660	COG2081	HI0933 family
AMD13_RS12670	COG0501	Belongs to the peptidase M48B family
AMD13_RS12675	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMD13_RS12680	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS12700	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMD13_RS12705	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMD13_RS12710	COG0802	atpase or kinase
AMD13_RS12715	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMD13_RS12715	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AMD13_RS12720	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMD13_RS12725	COG1570	exodeoxyribonuclease VII activity
AMD13_RS12735	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AMD13_RS12915	COG0835	chemotaxis
AMD13_RS12920	COG0840	transmembrane signaling receptor activity
AMD13_RS12925	COG2094	Belongs to the DNA glycosylase MPG family
AMD13_RS12930	COG1201	RNA secondary structure unwinding
AMD13_RS12945	COG2969	positive regulation of protein catabolic process
AMD13_RS12950	COG0625	glutathione transferase activity
AMD13_RS12955	COG2857	Cytochrome c1
AMD13_RS12960	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMD13_RS12965	COG0723	plastoquinol--plastocyanin reductase activity
AMD13_RS12970	COG0741	lytic transglycosylase activity
AMD13_RS12985	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMD13_RS12990	COG1702	phosphate starvation-inducible protein PhoH
AMD13_RS13000	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AMD13_RS13010	COG4535	Mg2 and Co2 transporter CorC
AMD13_RS13025	COG1012	belongs to the aldehyde dehydrogenase family
AMD13_RS13035	COG1177	transmembrane transport
AMD13_RS13040	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMD13_RS13045	COG3842	ATPase activity
AMD13_RS13065	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AMD13_RS13080	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AMD13_RS13085	COG0174	glutamine synthetase
AMD13_RS13090	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD13_RS13100	COG2703	oxygen carrier activity
AMD13_RS13105	COG0477	Major facilitator Superfamily
AMD13_RS13115	COG0243	molybdopterin cofactor binding
AMD13_RS13120	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AMD13_RS13125	COG2223	nitrite transmembrane transporter activity
AMD13_RS13130	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMD13_RS13140	COG2733	membrane
AMD13_RS13145	COG5002	protein histidine kinase activity
AMD13_RS13145	COG2205	protein histidine kinase activity
AMD13_RS13145	COG0784	Response regulator, receiver
AMD13_RS13155	COG0477	Major facilitator Superfamily
AMD13_RS13160	COG2902	Dehydrogenase
AMD13_RS13170	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD13_RS13175	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD13_RS13180	COG1609	Transcriptional regulator
AMD13_RS13185	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMD13_RS13185	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD13_RS13190	COG1105	Belongs to the carbohydrate kinase PfkB family
AMD13_RS13195	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD13_RS13195	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD13_RS13230	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AMD13_RS13240	COG1862	Preprotein translocase
AMD13_RS13245	COG0343	queuine tRNA-ribosyltransferase activity
AMD13_RS13250	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AMD13_RS13290	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AMD13_RS13295	COG3291	Pkd domain containing protein
AMD13_RS13305	COG0405	Gamma-glutamyltransferase
AMD13_RS13310	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AMD13_RS13325	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AMD13_RS13330	COG0742	ribosomal rna small subunit methyltransferase
AMD13_RS13335	COG0326	Molecular chaperone. Has ATPase activity
AMD13_RS13405	COG0531	amino acid
AMD13_RS13420	COG0006	proline dipeptidase activity
AMD13_RS13430	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMD13_RS13445	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD13_RS13450	COG3938	Belongs to the proline racemase family
AMD13_RS13460	COG0552	protein localization to endoplasmic reticulum
AMD13_RS13465	COG1194	a g-specific adenine glycosylase
AMD13_RS13470	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
AMD13_RS13475	COG4191	Histidine kinase
AMD13_RS13475	COG0784	Response regulator, receiver
AMD13_RS13490	COG0322	excinuclease ABC activity
AMD13_RS13505	COG3040	lipid binding
AMD13_RS13515	COG1960	acyl-CoA dehydrogenase activity
AMD13_RS13525	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AMD13_RS13545	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMD13_RS13550	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD13_RS13555	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD13_RS13580	COG0438	transferase activity, transferring glycosyl groups
AMD13_RS13590	COG0438	transferase activity, transferring glycosyl groups
AMD13_RS13595	COG0438	transferase activity, transferring glycosyl groups
AMD13_RS13645	COG0072	phenylalanine-tRNA ligase activity
AMD13_RS13645	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD13_RS13650	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AMD13_RS13665	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMD13_RS13670	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AMD13_RS13695	COG1082	Xylose isomerase domain protein TIM barrel
AMD13_RS13710	COG0366	Alpha amylase catalytic
AMD13_RS13715	COG2963	transposase activity
AMD13_RS13780	COG2948	multi-organism process
AMD13_RS13800	COG3505	Type IV secretory pathway VirD4
AMD13_RS13815	COG0556	nucleotide-excision repair
AMD13_RS13885	COG4695	Portal protein
AMD13_RS13930	COG3179	chitinase
AMD13_RS14025	COG3275	phosphorelay sensor kinase activity
AMD13_RS14030	COG1611	Belongs to the LOG family
AMD13_RS14040	COG2095	MarC family integral membrane protein
AMD13_RS14050	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMD13_RS14085	COG1185	polyribonucleotide nucleotidyltransferase activity
AMD13_RS14090	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AMD13_RS14095	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMD13_RS14100	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AMD13_RS14105	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AMD13_RS14110	COG0195	Participates in both transcription termination and antitermination
AMD13_RS14115	COG0779	Required for maturation of 30S ribosomal subunits
AMD13_RS14125	COG1007	ATP synthesis coupled electron transport
AMD13_RS14150	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD13_RS14155	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AMD13_RS14165	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AMD13_RS14170	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AMD13_RS14175	COG0649	NAD binding
AMD13_RS14180	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD13_RS14185	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD13_RS14190	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD13_RS14205	COG0149	triose-phosphate isomerase activity
AMD13_RS14210	COG0300	oxidoreductase activity
AMD13_RS14245	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMD13_RS14250	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AMD13_RS14255	COG0159	tryptophan synthase activity
AMD13_RS14265	COG0133	tryptophan synthase activity
AMD13_RS14275	COG0135	phosphoribosylanthranilate isomerase activity
AMD13_RS14280	COG0101	tRNA pseudouridine synthase activity
AMD13_RS14300	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AMD13_RS14305	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMD13_RS14310	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AMD13_RS14315	COG2890	protein-(glutamine-N5) methyltransferase activity
AMD13_RS14325	COG0688	phosphatidylethanolamine metabolic process
AMD13_RS14335	COG0433	COG0433 Predicted ATPase
AMD13_RS14340	COG0494	nUDIX hydrolase
AMD13_RS14355	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMD13_RS14360	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMD13_RS14385	COG0717	Belongs to the dCTP deaminase family
AMD13_RS14390	COG0489	protein tyrosine kinase activity
AMD13_RS14410	COG3590	peptidase
AMD13_RS14415	COG3590	peptidase
AMD13_RS14435	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMD13_RS14440	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD13_RS14445	COG2311	Membrane
AMD13_RS14450	COG1047	Peptidyl-prolyl cis-trans
AMD13_RS14455	COG0791	NLP P60 protein
AMD13_RS14460	COG0791	NLP P60 protein
AMD13_RS14470	COG4106	trans-aconitate 2-methyltransferase activity
AMD13_RS14475	COG1301	dicarboxylic acid transport
AMD13_RS14480	COG1785	Belongs to the alkaline phosphatase family
AMD13_RS14485	COG0037	tRNA processing
AMD13_RS14490	COG1722	exodeoxyribonuclease VII activity
AMD13_RS14495	COG0142	geranyltranstransferase activity
AMD13_RS14500	COG4104	PAAR repeat-containing protein
AMD13_RS14510	COG0312	modulator of DNA gyrase
AMD13_RS14515	COG3028	Belongs to the UPF0307 family
AMD13_RS14520	COG0312	modulator of DNA gyrase
AMD13_RS14530	COG3164	Protein of unknown function
AMD13_RS14540	COG0424	maF-like protein
AMD13_RS14545	COG2968	Membrane
AMD13_RS14560	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AMD13_RS14575	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AMD13_RS14590	COG0495	leucyl-tRNA aminoacylation
AMD13_RS14600	COG3118	belongs to the thioredoxin family
AMD13_RS14625	COG2155	Conserved Protein
AMD13_RS14670	COG1132	(ABC) transporter
AMD13_RS14695	COG1538	Outer membrane efflux protein
AMD13_RS14700	COG0745	RESPONSE REGULATOR receiver
AMD13_RS14705	COG5000	phosphorelay sensor kinase activity
AMD13_RS14705	COG5002	protein histidine kinase activity
AMD13_RS14710	COG0475	glutathione-regulated potassium exporter activity
AMD13_RS14720	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMD13_RS14745	COG1187	pseudouridine synthase activity
AMD13_RS14750	COG5001	Diguanylate cyclase
AMD13_RS14750	COG5002	protein histidine kinase activity
AMD13_RS14865	COG0667	Aldo Keto reductase
AMD13_RS14870	COG2814	Major facilitator Superfamily
AMD13_RS14875	COG0583	DNA-binding transcription factor activity
AMD13_RS14885	COG2207	Transcriptional regulator
AMD13_RS14895	COG1309	transcriptional regulator
AMD13_RS14920	COG0735	belongs to the Fur family
AMD13_RS14925	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMD13_RS14950	COG4452	Inner membrane protein CreD
AMD13_RS14960	COG2205	protein histidine kinase activity
AMD13_RS14965	COG0745	RESPONSE REGULATOR receiver
AMD13_RS14970	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AMD13_RS14980	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMD13_RS15015	COG0643	Histidine kinase
AMD13_RS15015	COG2198	Histidine kinase
AMD13_RS15020	COG0840	transmembrane signaling receptor activity
AMD13_RS15025	COG0835	chemotaxis
AMD13_RS15030	COG2202	Pas domain
AMD13_RS15030	COG2200	EAL domain
AMD13_RS15030	COG2199	diguanylate cyclase activity
AMD13_RS15035	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMD13_RS15040	COG2201	protein-glutamate methylesterase activity
AMD13_RS15045	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD13_RS15050	COG3590	peptidase
AMD13_RS15060	COG0588	phosphoglycerate mutase activity
AMD13_RS15065	COG1515	deoxyribonuclease V activity
AMD13_RS15075	COG1741	Belongs to the pirin family
AMD13_RS15090	COG1741	Belongs to the pirin family
AMD13_RS15095	COG1966	Carbon starvation protein
AMD13_RS15100	COG2879	small protein
AMD13_RS15155	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMD13_RS15160	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AMD13_RS15165	COG2080	2 iron, 2 sulfur cluster binding
AMD13_RS15175	COG3706	GGDEF domain
AMD13_RS15175	COG2203	Gaf domain
AMD13_RS15175	COG4251	negative regulation of phosphorylation
AMD13_RS15175	COG5001	Diguanylate cyclase
AMD13_RS15215	COG0629	single-stranded DNA binding
AMD13_RS15220	COG0142	geranyltranstransferase activity
AMD13_RS15230	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AMD13_RS15245	COG0527	aspartate kinase activity
AMD13_RS15250	COG0384	phenazine biosynthesis protein PhzF
AMD13_RS15255	COG0384	phenazine biosynthesis protein PhzF
AMD13_RS15265	COG1764	response to oxidative stress
AMD13_RS15270	COG0540	Belongs to the ATCase OTCase family
AMD13_RS15275	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AMD13_RS15280	COG1678	Uncharacterized ACR, COG1678
AMD13_RS15290	COG0519	Catalyzes the synthesis of GMP from XMP
AMD13_RS15300	COG5297	Belongs to the glycosyl hydrolase family 6
AMD13_RS15315	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
AMD13_RS15330	COG0739	heme binding
AMD13_RS15350	COG0693	protein deglycase activity
AMD13_RS15360	COG1959	2 iron, 2 sulfur cluster binding
AMD13_RS15365	COG0719	Fe-S assembly protein
AMD13_RS15370	COG0396	ATPase activity
AMD13_RS15375	COG0719	Fe-S assembly protein
AMD13_RS15380	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AMD13_RS15390	COG2146	nitrite reductase [NAD(P)H] activity
AMD13_RS15395	COG4774	siderophore transport
AMD13_RS15400	COG3128	pkhd-type hydroxylase
AMD13_RS15425	COG1477	protein flavinylation
AMD13_RS15430	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMD13_RS15445	COG1555	photosystem II stabilization
AMD13_RS15450	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD13_RS15460	COG3178	'Phosphotransferase
AMD13_RS15465	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMD13_RS15475	COG0628	permease
AMD13_RS15485	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AMD13_RS15495	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMD13_RS15515	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AMD13_RS15520	COG0271	Belongs to the BolA IbaG family
AMD13_RS15530	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AMD13_RS15540	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AMD13_RS15545	COG1137	ATPase activity
AMD13_RS15560	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD13_RS15565	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AMD13_RS15570	COG1660	Displays ATPase and GTPase activities
AMD13_RS15580	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD13_RS15585	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMD13_RS15590	COG2239	Acts as a magnesium transporter
AMD13_RS15600	COG1294	oxidase, subunit
AMD13_RS15605	COG1271	oxidase subunit
AMD13_RS15615	COG1113	amino acid transport
AMD13_RS15635	COG2197	response regulator
AMD13_RS15640	COG0531	amino acid
AMD13_RS15660	COG1234	tRNA 3'-trailer cleavage
AMD13_RS15695	COG2814	Major facilitator Superfamily
AMD13_RS15705	COG0754	glutathionylspermidine amidase activity
AMD13_RS15730	COG1842	Phage shock protein A
AMD13_RS15740	COG0259	pyridoxamine-phosphate oxidase activity
AMD13_RS15745	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AMD13_RS15750	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AMD13_RS15760	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AMD13_RS15835	COG2814	Major facilitator Superfamily
AMD13_RS15855	COG2198	Histidine kinase
AMD13_RS15855	COG2205	protein histidine kinase activity
AMD13_RS15855	COG0784	Response regulator, receiver
AMD13_RS15860	COG2353	YceI-like domain
AMD13_RS15880	COG1760	l-serine dehydratase
AMD13_RS15890	COG0460	homoserine dehydrogenase
AMD13_RS15890	COG0527	aspartate kinase activity
AMD13_RS15895	COG0626	cystathionine gamma-synthase activity
AMD13_RS15900	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMD13_RS15905	COG0739	heme binding
AMD13_RS15910	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AMD13_RS15915	COG1272	protein, Hemolysin III
AMD13_RS15920	COG2982	Protein involved in outer membrane biogenesis
AMD13_RS15925	COG0517	IMP dehydrogenase activity
AMD13_RS15925	COG0516	GMP reductase activity
AMD13_RS15930	COG0463	Glycosyl transferase, family 2
AMD13_RS15935	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMD13_RS15940	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AMD13_RS15950	COG4771	TonB-dependent receptor
AMD13_RS15960	COG1309	transcriptional regulator
AMD13_RS15970	COG1960	acyl-CoA dehydrogenase activity
AMD13_RS15995	COG0509	glycine decarboxylation via glycine cleavage system
AMD13_RS16000	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMD13_RS16010	COG0330	HflC and HflK could
AMD13_RS16015	COG1742	UPF0060 membrane protein
AMD13_RS16020	COG3956	TIGRFAM MazG family protein
AMD13_RS16030	COG0494	nUDIX hydrolase
AMD13_RS16040	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMD13_RS16045	COG0837	glucose binding
AMD13_RS16060	COG1388	LysM domain
AMD13_RS16060	COG3858	chitin binding
AMD13_RS16065	COG3525	Glycosyl hydrolase, family 20, catalytic domain
AMD13_RS16075	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD13_RS16090	COG0531	amino acid
AMD13_RS16100	COG1486	melibiose metabolic process
AMD13_RS16110	COG3537	Alpha-1,2-mannosidase
AMD13_RS16145	COG3142	Participates in the control of copper homeostasis
AMD13_RS16150	COG1446	asparaginase
AMD13_RS16175	COG2198	Histidine kinase
AMD13_RS16175	COG0784	Response regulator, receiver
AMD13_RS16175	COG0643	Histidine kinase
AMD13_RS16180	COG0840	transmembrane signaling receptor activity
AMD13_RS16185	COG0835	chemotaxis
AMD13_RS16200	COG0189	ligase activity
AMD13_RS16210	COG1397	ADP-ribosylglycohydrolase
AMD13_RS16220	COG1199	ATP-dependent helicase activity
AMD13_RS16230	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMD13_RS16235	COG1215	transferase activity, transferring glycosyl groups
AMD13_RS16245	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMD13_RS16250	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AMD13_RS16255	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
AMD13_RS16260	COG0535	radical SAM domain protein
AMD13_RS16265	COG0535	radical SAM domain protein
AMD13_RS16280	COG0837	glucose binding
AMD13_RS16290	COG1643	Atp-dependent helicase
AMD13_RS16295	COG0783	Belongs to the Dps family
AMD13_RS16300	COG0514	ATP-dependent DNA helicase (RecQ)
AMD13_RS16335	COG0840	transmembrane signaling receptor activity
AMD13_RS16355	COG3920	Histidine kinase
AMD13_RS16360	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AMD13_RS16370	COG0602	queuosine metabolic process
AMD13_RS16380	COG2885	chlorophyll binding
AMD13_RS16385	COG0823	Involved in the tonB-independent uptake of proteins
AMD13_RS16395	COG0848	biopolymer transport protein
AMD13_RS16405	COG0824	Thioesterase
AMD13_RS16410	COG2255	four-way junction helicase activity
AMD13_RS16420	COG3158	transport of potassium into the cell
AMD13_RS16425	COG0632	four-way junction helicase activity
AMD13_RS16430	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AMD13_RS16435	COG0217	transcriptional regulatory protein
AMD13_RS16450	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AMD13_RS16465	COG0477	Major facilitator Superfamily
AMD13_RS16500	COG0488	(ABC) transporter
AMD13_RS16535	COG4651	solute:proton antiporter activity
AMD13_RS16535	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMD13_RS16560	COG4772	TonB-dependent receptor
AMD13_RS16570	COG4264	IucA IucC family
AMD13_RS16585	COG0019	diaminopimelate decarboxylase activity
AMD13_RS16610	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AMD13_RS16620	COG1492	cobalamin metabolic process
AMD13_RS16630	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AMD13_RS16650	COG4206	TonB-dependent receptor
AMD13_RS16655	COG0542	response to heat
AMD13_RS16660	COG1116	anion transmembrane transporter activity
AMD13_RS16665	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMD13_RS16670	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMD13_RS16675	COG0667	Aldo Keto reductase
AMD13_RS16680	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMD13_RS16685	COG4771	TonB-dependent receptor
AMD13_RS16690	COG2827	Endonuclease containing a URI domain
AMD13_RS16730	COG1877	trehalose-phosphatase activity
AMD13_RS16735	COG3387	PFAM Glycoside hydrolase 15-related
AMD13_RS16750	COG0840	transmembrane signaling receptor activity
AMD13_RS16755	COG3011	Protein conserved in bacteria
AMD13_RS16770	COG0564	pseudouridine synthase activity
AMD13_RS16775	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD13_RS16785	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AMD13_RS16785	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMD13_RS16815	COG2951	lytic endotransglycosylase activity
AMD13_RS16820	COG4644	lycopene metabolic process
AMD13_RS16840	COG2369	cell adhesion
AMD13_RS16860	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AMD13_RS16865	COG0045	succinate-CoA ligase (ADP-forming) activity
AMD13_RS16880	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD13_RS16910	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AMD13_RS16915	COG0237	dephospho-CoA kinase activity
AMD13_RS16935	COG2801	Transposase and inactivated derivatives
AMD13_RS16940	COG5002	protein histidine kinase activity
AMD13_RS16945	COG0745	RESPONSE REGULATOR receiver
AMD13_RS16955	COG0189	ligase activity
AMD13_RS17015	COG2003	Belongs to the UPF0758 family
AMD13_RS17040	COG0784	Response regulator, receiver
AMD13_RS17040	COG4191	Histidine kinase
AMD13_RS17045	COG4191	Histidine kinase
AMD13_RS17045	COG0784	Response regulator, receiver
AMD13_RS17155	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AMD13_RS17180	COG2022	thiamine diphosphate biosynthetic process
AMD13_RS17185	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AMD13_RS17190	COG3273	potassium ion transport
AMD13_RS17190	COG0471	metal ion transport
AMD13_RS17210	COG1970	mechanosensitive ion channel activity
AMD13_RS17235	COG3250	beta-galactosidase activity
AMD13_RS17240	COG4948	Mandelate Racemase Muconate Lactonizing
AMD13_RS17255	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMD13_RS17265	COG0308	aminopeptidase N
AMD13_RS17315	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD13_RS17325	COG0529	Catalyzes the synthesis of activated sulfate
AMD13_RS17325	COG2895	sulfate adenylyltransferase (ATP) activity
AMD13_RS17330	COG0175	sulfate reduction
AMD13_RS17335	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMD13_RS17340	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMD13_RS17345	COG0175	sulfate reduction
AMD13_RS17365	COG2205	protein histidine kinase activity
AMD13_RS17365	COG2198	Histidine kinase
AMD13_RS17365	COG0784	Response regulator, receiver
AMD13_RS17400	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
AMD13_RS17405	COG3588	fructose-bisphosphate aldolase
AMD13_RS17410	COG0469	pyruvate kinase activity
AMD13_RS17420	COG0126	phosphoglycerate kinase activity
AMD13_RS17440	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AMD13_RS17450	COG3047	cAMP biosynthetic process
AMD13_RS17455	COG3047	cAMP biosynthetic process
AMD13_RS17465	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD13_RS17465	COG3453	Protein conserved in bacteria
AMD13_RS17470	COG0725	ABC transporter, periplasmic molybdate-binding protein
AMD13_RS17475	COG4149	molybdate abc transporter
AMD13_RS17480	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AMD13_RS17515	COG1376	ErfK ybiS ycfS ynhG family protein
AMD13_RS17520	COG0739	heme binding
AMD13_RS17530	COG4773	Receptor
AMD13_RS17545	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AMD13_RS17550	COG1301	dicarboxylic acid transport
AMD13_RS17560	COG2304	oxidoreductase activity
AMD13_RS17580	COG0714	Associated with various cellular activities
AMD13_RS17610	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AMD13_RS17635	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMD13_RS17645	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMD13_RS17655	COG0194	GDP metabolic process
AMD13_RS17660	COG1561	YicC-like family, N-terminal region
AMD13_RS17665	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AMD13_RS17675	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AMD13_RS17680	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMD13_RS17695	COG0006	proline dipeptidase activity
AMD13_RS17705	COG0006	proline dipeptidase activity
AMD13_RS17710	COG3079	Belongs to the UPF0149 family
AMD13_RS17725	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMD13_RS17735	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AMD13_RS17745	COG2912	Transglutaminase-like superfamily
AMD13_RS17750	COG1773	rubredoxin
AMD13_RS17755	COG0352	thiamine-phosphate diphosphorylase activity
AMD13_RS17770	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AMD13_RS17785	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMD13_RS17815	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMD13_RS17820	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD13_RS17825	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS17835	COG0671	phosphoesterase, PA-phosphatase related
AMD13_RS17840	COG3781	membrane
AMD13_RS17850	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMD13_RS17855	COG0563	adenylate kinase activity
AMD13_RS17870	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
AMD13_RS17880	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMD13_RS17900	COG3710	Transcriptional regulator
AMD13_RS17905	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AMD13_RS17915	COG0840	transmembrane signaling receptor activity
AMD13_RS17920	COG0405	Gamma-glutamyltransferase
AMD13_RS17925	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AMD13_RS17945	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMD13_RS17950	COG0473	3-isopropylmalate dehydrogenase activity
AMD13_RS17955	COG0066	3-isopropylmalate dehydratase activity
AMD13_RS17960	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AMD13_RS17980	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMD13_RS17985	COG1538	Outer membrane efflux protein
AMD13_RS17990	COG1519	Transferase
AMD13_RS17995	COG1560	Kdo2-lipid A biosynthetic process
AMD13_RS18020	COG0280	phosphate acetyltransferase
AMD13_RS18020	COG0281	malic enzyme
AMD13_RS18025	COG1301	dicarboxylic acid transport
AMD13_RS18050	COG0583	DNA-binding transcription factor activity
AMD13_RS18055	COG0667	Aldo Keto reductase
AMD13_RS18070	COG2197	response regulator
AMD13_RS18080	COG0642	Histidine kinase
AMD13_RS18095	COG2851	Citrate transporter
AMD13_RS18100	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS18105	COG1609	Transcriptional regulator
AMD13_RS18110	COG2211	Major facilitator Superfamily
AMD13_RS18135	COG1162	GTPase activity
AMD13_RS18155	COG4773	Receptor
AMD13_RS18160	COG0726	polysaccharide deacetylase
AMD13_RS18165	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMD13_RS18180	COG2963	transposase activity
AMD13_RS18185	COG2801	Transposase and inactivated derivatives
AMD13_RS18200	COG1307	EDD domain protein, DegV family
AMD13_RS18205	COG0242	peptide deformylase activity
AMD13_RS18225	COG0457	Tetratricopeptide repeat
AMD13_RS18230	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AMD13_RS18235	COG1215	transferase activity, transferring glycosyl groups
AMD13_RS18240	COG1215	transferase activity, transferring glycosyl groups
AMD13_RS18255	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AMD13_RS18310	COG2188	Transcriptional regulator
AMD13_RS18320	COG1450	Type ii and iii secretion system protein
AMD13_RS18335	COG3166	PFAM Fimbrial assembly family protein
AMD13_RS18340	COG3156	type II secretion system protein K
AMD13_RS18345	COG4795	General secretion pathway protein
AMD13_RS18350	COG2165	general secretion pathway protein
AMD13_RS18355	COG4970	Tfp pilus assembly protein FimT
AMD13_RS18360	COG2165	general secretion pathway protein
AMD13_RS18365	COG1459	type II secretion system
AMD13_RS18370	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD13_RS18375	COG1404	Belongs to the peptidase S8 family
AMD13_RS18380	COG5295	Hep Hag repeat protein
AMD13_RS18385	COG1404	Belongs to the peptidase S8 family
AMD13_RS18390	COG5295	Hep Hag repeat protein
AMD13_RS18400	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMD13_RS18400	COG0047	phosphoribosylformylglycinamidine synthase activity
AMD13_RS18405	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMD13_RS18410	COG4974	Belongs to the 'phage' integrase family
AMD13_RS18425	COG0795	lipopolysaccharide-transporting ATPase activity
AMD13_RS18435	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMD13_RS18450	COG0525	valine-tRNA ligase activity
AMD13_RS18480	COG1183	phosphatidylcholine synthase activity
AMD13_RS18490	COG0442	prolyl-tRNA aminoacylation
AMD13_RS18505	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMD13_RS18510	COG1127	ABC transporter
AMD13_RS18515	COG3218	ABC-type transport auxiliary lipoprotein component
AMD13_RS18515	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMD13_RS18550	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMD13_RS18555	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
AMD13_RS18555	COG0662	Cupin 2, conserved barrel domain protein
AMD13_RS18585	COG2086	electron transfer activity
AMD13_RS18600	COG0546	phosphoglycolate phosphatase activity
AMD13_RS18600	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMD13_RS18605	COG0277	FAD linked oxidase domain protein
AMD13_RS18620	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMD13_RS18650	COG0438	transferase activity, transferring glycosyl groups
AMD13_RS18650	COG1216	Glycosyl transferase, family 2
AMD13_RS18670	COG0626	cystathionine gamma-synthase activity
AMD13_RS18705	COG0625	glutathione transferase activity
AMD13_RS18715	COG0513	Belongs to the DEAD box helicase family
AMD13_RS18725	COG4206	TonB-dependent receptor
AMD13_RS18730	COG0720	synthase
AMD13_RS18740	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AMD13_RS18750	COG1956	GAF domain-containing protein
AMD13_RS18760	COG2819	hydrolase of the alpha beta superfamily
AMD13_RS18775	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMD13_RS18780	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD13_RS18795	COG0339	signal peptide processing
AMD13_RS18845	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMD13_RS18850	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD13_RS18855	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMD13_RS18855	COG1136	(ABC) transporter
AMD13_RS18860	COG0577	efflux transmembrane transporter activity
AMD13_RS18860	COG1136	(ABC) transporter
AMD13_RS18865	COG0577	efflux transmembrane transporter activity
AMD13_RS18880	COG4191	Histidine kinase
AMD13_RS18885	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AMD13_RS18900	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AMD13_RS18905	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AMD13_RS18910	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AMD13_RS18915	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AMD13_RS18920	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AMD13_RS18925	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AMD13_RS18935	COG0356	it plays a direct role in the translocation of protons across the membrane
AMD13_RS18955	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMD13_RS18965	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMD13_RS19010	COG2011	ABC-type metal ion transport system permease component
AMD13_RS19015	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AMD13_RS19020	COG0697	spore germination
AMD13_RS19025	COG1666	GTP binding
AMD13_RS19035	COG2198	Histidine kinase
AMD13_RS19035	COG0784	Response regulator, receiver
AMD13_RS19035	COG5002	protein histidine kinase activity
AMD13_RS19060	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMD13_RS19065	COG1187	pseudouridine synthase activity
AMD13_RS19070	COG2813	Specifically methylates the guanine in position
AMD13_RS19090	COG2202	Pas domain
AMD13_RS19090	COG2205	protein histidine kinase activity
AMD13_RS19110	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AMD13_RS19115	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD13_RS19170	COG0842	Transport permease protein
AMD13_RS19175	COG1131	(ABC) transporter
AMD13_RS19180	COG0025	NhaP-type Na H and K H
AMD13_RS19185	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
AMD13_RS19190	COG1573	uracil-dna glycosylase
AMD13_RS19200	COG3384	dioxygenase
AMD13_RS19210	COG0583	DNA-binding transcription factor activity
AMD13_RS19220	COG0667	Aldo Keto reductase
AMD13_RS19230	COG3590	peptidase
AMD13_RS19250	COG0531	amino acid
AMD13_RS19265	COG2972	Histidine kinase
AMD13_RS19280	COG3685	Protein conserved in bacteria
AMD13_RS19285	COG3546	catalase activity
AMD13_RS19330	COG1271	oxidase subunit
AMD13_RS19335	COG1294	oxidase, subunit
AMD13_RS19350	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS19355	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMD13_RS19375	COG1132	(ABC) transporter
AMD13_RS19390	COG1063	alcohol dehydrogenase
AMD13_RS19465	COG0251	oxidation-reduction process
AMD13_RS19495	COG0840	transmembrane signaling receptor activity
AMD13_RS19515	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AMD13_RS19555	COG0024	Methionine aminopeptidase
AMD13_RS19575	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMD13_RS19580	COG1490	D-aminoacyl-tRNA deacylase activity
AMD13_RS19585	COG1560	Kdo2-lipid A biosynthetic process
AMD13_RS19635	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMD13_RS19635	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMD13_RS19640	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AMD13_RS19645	COG0242	peptide deformylase activity
AMD13_RS19650	COG1652	LysM domain
AMD13_RS19655	COG0758	DNA mediated transformation
AMD13_RS19660	COG2922	Belongs to the Smg family
AMD13_RS19675	COG1754	DNA topoisomerase type I activity
AMD13_RS19675	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMD13_RS19680	COG0009	L-threonylcarbamoyladenylate synthase
AMD13_RS19695	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS19705	COG0616	signal peptide processing
AMD13_RS19710	COG0534	Mate efflux family protein
AMD13_RS19730	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AMD13_RS19735	COG0625	glutathione transferase activity
AMD13_RS19750	COG1252	NADH dehydrogenase
AMD13_RS19755	COG2860	membrane
AMD13_RS19760	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMD13_RS19765	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMD13_RS19770	COG2201	protein-glutamate methylesterase activity
AMD13_RS19775	COG2177	Part of the ABC transporter FtsEX involved in
AMD13_RS19780	COG2884	Cell division ATP-binding protein ftsE
AMD13_RS19785	COG0513	Belongs to the DEAD box helicase family
AMD13_RS19790	COG3118	belongs to the thioredoxin family
AMD13_RS19795	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMD13_RS19800	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
AMD13_RS19805	COG0583	DNA-binding transcription factor activity
AMD13_RS19850	COG1518	maintenance of DNA repeat elements
AMD13_RS19855	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
AMD13_RS19865	COG1652	LysM domain
AMD13_RS19870	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AMD13_RS19870	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AMD13_RS19875	COG1473	amidohydrolase
AMD13_RS19880	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD13_RS19885	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD13_RS19895	COG5383	Protein conserved in bacteria
AMD13_RS19935	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
AMD13_RS19940	COG3023	N-Acetylmuramoyl-L-alanine amidase
AMD13_RS19950	COG4948	Mandelate Racemase Muconate Lactonizing
AMD13_RS19960	COG0531	amino acid
AMD13_RS19975	COG4682	membrane
AMD13_RS19980	COG2133	pyrroloquinoline quinone binding
AMD13_RS19990	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AMD13_RS19995	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AMD13_RS20005	COG1610	YqeY-like protein
AMD13_RS20010	COG1295	ribonuclease BN
AMD13_RS20015	COG0358	DNA primase activity
AMD13_RS20030	COG0109	protoheme IX farnesyltransferase activity
AMD13_RS20060	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AMD13_RS20070	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMD13_RS20115	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AMD13_RS20120	COG0739	heme binding
AMD13_RS20125	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AMD13_RS20135	COG2223	nitrite transmembrane transporter activity
AMD13_RS20140	COG0708	Exodeoxyribonuclease III
AMD13_RS20145	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AMD13_RS20155	COG1192	Involved in chromosome partitioning
AMD13_RS20160	COG1475	DNA binding
AMD13_RS20175	COG0463	Glycosyl transferase, family 2
AMD13_RS20195	COG0756	dUTP diphosphatase activity
AMD13_RS20200	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMD13_RS20205	COG2003	Belongs to the UPF0758 family
AMD13_RS20210	COG0018	arginyl-trna synthetase
AMD13_RS20225	COG4221	oxidoreductase activity
AMD13_RS20230	COG2755	lipolytic protein G-D-S-L family
AMD13_RS20230	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMD13_RS20240	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMD13_RS20250	COG1166	arginine decarboxylase activity
AMD13_RS20255	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AMD13_RS20295	COG0606	chelatase, subunit chli
AMD13_RS20390	COG0606	chelatase, subunit chli
AMD13_RS20405	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AMD13_RS20440	COG1690	Belongs to the RtcB family
AMD13_RS20480	COG1090	epimerase
AMD13_RS20490	COG0642	Histidine kinase
AMD13_RS20510	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMD13_RS20535	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMD13_RS20540	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMD13_RS20555	COG0753	catalase activity
AMD13_RS20570	COG2197	response regulator
AMD13_RS20575	COG4585	Histidine kinase
AMD13_RS20580	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD13_RS20585	COG1136	(ABC) transporter
AMD13_RS20610	COG0697	spore germination
AMD13_RS20625	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD13_RS20630	COG0180	Tryptophanyl-tRNA synthetase
AMD13_RS20635	COG3237	CsbD-like
AMD13_RS20675	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AMD13_RS20690	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AMD13_RS20735	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMD13_RS20755	COG1199	ATP-dependent helicase activity
AMD13_RS20770	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AMD13_RS20830	COG0625	glutathione transferase activity
AMD13_RS20870	COG4555	ABC transporter
AMD13_RS20880	COG1476	TRANSCRIPTIONal
AMD13_RS20925	COG0543	2 iron, 2 sulfur cluster binding
AMD13_RS20925	COG0633	Ferredoxin
AMD13_RS20930	COG1131	(ABC) transporter
AMD13_RS20935	COG0842	Transport permease protein
AMD13_RS20945	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMD13_RS20975	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMD13_RS20980	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMD13_RS20990	COG1042	CoA-binding domain protein
AMD13_RS20990	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AMD13_RS20990	COG0045	succinate-CoA ligase (ADP-forming) activity
AMD13_RS20995	COG2239	Acts as a magnesium transporter
AMD13_RS21000	COG3338	carbonate dehydratase activity
AMD13_RS21010	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMD13_RS21015	COG3387	PFAM Glycoside hydrolase 15-related
AMD13_RS21030	COG3100	YcgL domain-containing protein
AMD13_RS21035	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMD13_RS21045	COG0463	Glycosyl transferase, family 2
AMD13_RS21060	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS21100	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD13_RS21115	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMD13_RS21140	COG1506	peptidase
AMD13_RS21140	COG0823	Involved in the tonB-independent uptake of proteins
AMD13_RS21140	COG4946	Tricorn protease homolog
AMD13_RS21155	COG0408	coproporphyrinogen oxidase activity
AMD13_RS21190	COG0515	serine threonine protein kinase
AMD13_RS21190	COG2815	serine threonine protein kinase
AMD13_RS21195	COG0631	protein serine/threonine phosphatase activity
AMD13_RS21355	COG0210	DNA helicase
AMD13_RS21370	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD13_RS21375	COG0583	DNA-binding transcription factor activity
AMD13_RS21380	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMD13_RS21390	COG2159	amidohydrolase
AMD13_RS21410	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD13_RS21430	COG0357	Ribosomal RNA small subunit methyltransferase G
AMD13_RS21435	COG3540	Alkaline phosphatase
AMD13_RS21445	COG2091	lysine biosynthetic process via aminoadipic acid
AMD13_RS21465	COG0708	Exodeoxyribonuclease III
AMD13_RS21470	COG1940	carbohydrate kinase activity
AMD13_RS21470	COG1846	Transcriptional regulator
AMD13_RS21480	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMD13_RS21490	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMD13_RS21495	COG3162	membrane
AMD13_RS21505	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMD13_RS21535	COG3507	Belongs to the glycosyl hydrolase 43 family
AMD13_RS21555	COG1028	Short-chain dehydrogenase reductase Sdr
AMD13_RS21560	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMD13_RS21565	COG4948	Mandelate Racemase Muconate Lactonizing
AMD13_RS21575	COG3254	rhamnose metabolic process
AMD13_RS21580	COG0738	Major facilitator superfamily
AMD13_RS21585	COG1414	Transcriptional regulator
AMD13_RS21590	COG1971	Probably functions as a manganese efflux pump
AMD13_RS21595	COG2205	protein histidine kinase activity
AMD13_RS21610	COG3459	Glycosyltransferase 36 associated
AMD13_RS21615	COG2211	Major facilitator Superfamily
AMD13_RS21620	COG3265	gluconokinase activity
AMD13_RS21625	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD13_RS21645	COG2911	Protein conserved in bacteria
AMD13_RS21650	COG0729	surface antigen
AMD13_RS21690	COG0752	glycyl-tRNA synthetase alpha subunit
AMD13_RS21695	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD13_RS21705	COG0519	Catalyzes the synthesis of GMP from XMP
AMD13_RS21705	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMD13_RS21715	COG0805	protein transport
AMD13_RS21720	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMD13_RS21725	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMD13_RS21735	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AMD13_RS21755	COG2974	May be involved in recombination
AMD13_RS21760	COG0037	tRNA processing
AMD13_RS21765	COG2115	Belongs to the xylose isomerase family
AMD13_RS21775	COG3661	Belongs to the glycosyl hydrolase 67 family
AMD13_RS21785	COG4948	Mandelate Racemase Muconate Lactonizing
AMD13_RS21795	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD13_RS21800	COG0246	Mannitol dehydrogenase
AMD13_RS21875	COG3386	PFAM SMP-30 Gluconolaconase
AMD13_RS21885	COG3250	beta-galactosidase activity
AMD13_RS21890	COG1904	glucuronate isomerase
AMD13_RS21895	COG3693	PFAM glycoside hydrolase, family 10
AMD13_RS21910	COG3693	PFAM glycoside hydrolase, family 10
AMD13_RS21925	COG2211	Major facilitator Superfamily
AMD13_RS21970	COG2937	Belongs to the GPAT DAPAT family
AMD13_RS22005	COG0284	orotidine-5'-phosphate decarboxylase activity
AMD13_RS22010	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
AMD13_RS22015	COG3132	Protein of unknown function, DUF480
AMD13_RS22030	COG0210	DNA helicase
AMD13_RS22035	COG1435	thymidine kinase activity
AMD13_RS22045	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
AMD13_RS22055	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AMD13_RS22090	COG3135	benzoate transporter
AMD13_RS22110	COG0676	glucose-6-phosphate 1-epimerase activity
AMD13_RS22120	COG3012	SEC-C Motif Domain Protein
AMD13_RS22125	COG0730	response to heat
AMD13_RS22145	COG0302	gtp cyclohydrolase
AMD13_RS22160	COG1566	PFAM secretion protein HlyD family protein
AMD13_RS22170	COG1289	transmembrane transporter activity
AMD13_RS22175	COG0477	Major facilitator Superfamily
AMD13_RS22185	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD13_RS22205	COG4691	Plasmid stability protein
AMD13_RS22210	COG1487	ribonuclease activity
AMD13_RS22235	COG0564	pseudouridine synthase activity
AMD13_RS22270	COG0439	Biotin carboxylase
AMD13_RS22310	COG1074	ATP-dependent DNA helicase activity
AMD13_RS22315	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AMD13_RS22330	COG1127	ABC transporter
AMD13_RS22335	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMD13_RS22340	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMD13_RS22355	COG2853	Lipoprotein
AMD13_RS22365	COG0386	Belongs to the glutathione peroxidase family
AMD13_RS22375	COG1322	Protein conserved in bacteria
AMD13_RS22380	COG0604	alcohol dehydrogenase
AMD13_RS22395	COG0625	glutathione transferase activity
AMD13_RS22405	COG0531	amino acid
AMD13_RS22410	COG3537	Alpha-1,2-mannosidase
AMD13_RS22420	COG3706	GGDEF domain
AMD13_RS22425	COG3835	regulator
AMD13_RS22430	COG1929	Belongs to the glycerate kinase type-1 family
AMD13_RS22435	COG2271	Major facilitator Superfamily
AMD13_RS22450	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMD13_RS22455	COG0861	Integral membrane protein TerC family
AMD13_RS22465	COG0584	glycerophosphoryl diester phosphodiesterase
AMD13_RS22480	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AMD13_RS22485	COG0726	polysaccharide deacetylase
AMD13_RS22495	COG0706	membrane insertase activity
AMD13_RS22500	COG0594	ribonuclease P activity