locus-tag	class	description
AMD21_RS00150	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AMD21_RS00170	COG1192	Involved in chromosome partitioning
AMD21_RS00205	COG2951	lytic endotransglycosylase activity
AMD21_RS00210	COG4644	lycopene metabolic process
AMD21_RS00340	COG2948	multi-organism process
AMD21_RS00345	COG3504	Conjugal transfer protein
AMD21_RS00450	COG4456	Virulence-associated protein
AMD21_RS00455	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AMD21_RS00485	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AMD21_RS00500	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AMD21_RS00510	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMD21_RS00515	COG0187	DNA topoisomerase II activity
AMD21_RS00525	COG0501	Belongs to the peptidase M48B family
AMD21_RS00555	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AMD21_RS00565	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD21_RS00610	COG0793	Belongs to the peptidase S41A family
AMD21_RS00615	COG4942	peptidase
AMD21_RS00625	COG2234	aminopeptidase activity
AMD21_RS00635	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD21_RS00640	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD21_RS00645	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD21_RS00650	COG1064	alcohol dehydrogenase
AMD21_RS00655	COG0493	'glutamate synthase
AMD21_RS00660	COG0067	glutamate synthase
AMD21_RS00660	COG0069	glutamate synthase activity
AMD21_RS00660	COG0070	glutamate synthase
AMD21_RS00705	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AMD21_RS00720	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
AMD21_RS00725	COG0438	transferase activity, transferring glycosyl groups
AMD21_RS00725	COG0297	glycogen (starch) synthase activity
AMD21_RS00745	COG0367	asparagine synthase
AMD21_RS00775	COG1132	(ABC) transporter
AMD21_RS00805	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AMD21_RS00885	COG1111	helicase
AMD21_RS00885	COG1205	dead DEAH box helicase
AMD21_RS00890	COG1272	protein, Hemolysin III
AMD21_RS00905	COG0300	oxidoreductase activity
AMD21_RS00910	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS00930	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMD21_RS00990	COG3237	CsbD-like
AMD21_RS01040	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD21_RS01050	COG0477	Major facilitator Superfamily
AMD21_RS01090	COG0714	Associated with various cellular activities
AMD21_RS01120	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AMD21_RS01130	COG4772	TonB-dependent receptor
AMD21_RS01140	COG0662	Cupin 2, conserved barrel domain protein
AMD21_RS01145	COG1012	belongs to the aldehyde dehydrogenase family
AMD21_RS01170	COG1304	FMN binding
AMD21_RS01185	COG4585	Histidine kinase
AMD21_RS01190	COG2197	response regulator
AMD21_RS01210	COG3710	Transcriptional regulator
AMD21_RS01215	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMD21_RS01285	COG2801	Transposase and inactivated derivatives
AMD21_RS01290	COG0366	Alpha amylase catalytic
AMD21_RS01295	COG0366	Alpha amylase catalytic
AMD21_RS01300	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMD21_RS01320	COG0657	acetylesterase activity
AMD21_RS01320	COG2755	lipolytic protein G-D-S-L family
AMD21_RS01330	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMD21_RS01345	COG3507	Belongs to the glycosyl hydrolase 43 family
AMD21_RS01350	COG1609	Transcriptional regulator
AMD21_RS01355	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
AMD21_RS01360	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS01370	COG2755	lipolytic protein G-D-S-L family
AMD21_RS01385	COG3186	Phenylalanine-4-hydroxylase
AMD21_RS01390	COG1522	sequence-specific DNA binding
AMD21_RS01400	COG1752	Esterase of the alpha-beta hydrolase superfamily
AMD21_RS01410	COG1119	ATPase activity
AMD21_RS01425	COG1125	glycine betaine transport
AMD21_RS01440	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AMD21_RS01460	COG1396	sequence-specific DNA binding
AMD21_RS01485	COG0489	protein tyrosine kinase activity
AMD21_RS01490	COG2062	phosphohistidine phosphatase, SixA
AMD21_RS01500	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD21_RS01545	COG1968	undecaprenyl-diphosphatase activity
AMD21_RS01550	COG0174	glutamine synthetase
AMD21_RS01555	COG0347	Belongs to the P(II) protein family
AMD21_RS01560	COG0004	ammonium transporteR
AMD21_RS01565	COG3852	Histidine kinase
AMD21_RS01570	COG2204	response regulator
AMD21_RS01575	COG2032	superoxide dismutase activity
AMD21_RS01580	COG2032	superoxide dismutase activity
AMD21_RS01585	COG0346	lactoylglutathione lyase activity
AMD21_RS01595	COG0183	Belongs to the thiolase family
AMD21_RS01630	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMD21_RS01635	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AMD21_RS01640	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AMD21_RS01650	COG0028	Belongs to the TPP enzyme family
AMD21_RS01655	COG2205	protein histidine kinase activity
AMD21_RS01680	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AMD21_RS01695	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD21_RS01705	COG0596	Alpha beta hydrolase
AMD21_RS01710	COG0727	PFAM Uncharacterised protein family (UPF0153)
AMD21_RS01715	COG0318	PFAM AMP-dependent synthetase and ligase
AMD21_RS01720	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMD21_RS01735	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMD21_RS01745	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMD21_RS01755	COG0564	pseudouridine synthase activity
AMD21_RS01780	COG0339	signal peptide processing
AMD21_RS01810	COG0475	glutathione-regulated potassium exporter activity
AMD21_RS01815	COG0583	DNA-binding transcription factor activity
AMD21_RS01820	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AMD21_RS01825	COG2224	Isocitrate lyase
AMD21_RS01855	COG4770	biotin carboxylase activity
AMD21_RS01860	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMD21_RS01865	COG1960	acyl-CoA dehydrogenase activity
AMD21_RS01920	COG0523	cobalamin synthesis protein
AMD21_RS01935	COG0697	spore germination
AMD21_RS01945	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMD21_RS01950	COG1846	Transcriptional regulator
AMD21_RS01955	COG1764	response to oxidative stress
AMD21_RS01985	COG2130	NADP-dependent
AMD21_RS02000	COG1187	pseudouridine synthase activity
AMD21_RS02015	COG1643	Atp-dependent helicase
AMD21_RS02025	COG4807	Protein conserved in bacteria
AMD21_RS02030	COG2351	hydroxyisourate hydrolase activity
AMD21_RS02035	COG2072	flavoprotein involved in K transport
AMD21_RS02055	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AMD21_RS02090	COG1957	nucleoside hydrolase
AMD21_RS02100	COG2252	PERMEase
AMD21_RS02125	COG0084	hydrolase, TatD family'
AMD21_RS02140	COG0583	DNA-binding transcription factor activity
AMD21_RS02145	COG2814	Major facilitator Superfamily
AMD21_RS02160	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AMD21_RS02165	COG1902	pentaerythritol trinitrate reductase activity
AMD21_RS02185	COG0745	RESPONSE REGULATOR receiver
AMD21_RS02190	COG2205	protein histidine kinase activity
AMD21_RS02195	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD21_RS02215	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMD21_RS02220	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMD21_RS02225	COG0583	DNA-binding transcription factor activity
AMD21_RS02255	COG0702	epimerase
AMD21_RS02260	COG1733	regulation of RNA biosynthetic process
AMD21_RS02285	COG2801	Transposase and inactivated derivatives
AMD21_RS02300	COG0129	dihydroxy-acid dehydratase activity
AMD21_RS02320	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AMD21_RS02375	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AMD21_RS02380	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMD21_RS02405	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AMD21_RS02410	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AMD21_RS02420	COG3485	protocatechuate 3,4-dioxygenase
AMD21_RS02425	COG3485	protocatechuate 3,4-dioxygenase
AMD21_RS02435	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMD21_RS02440	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMD21_RS02450	COG1414	Transcriptional regulator
AMD21_RS02460	COG0657	acetylesterase activity
AMD21_RS02470	COG0445	tRNA wobble uridine modification
AMD21_RS02480	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMD21_RS02510	COG2267	carboxylic ester hydrolase activity
AMD21_RS02520	COG0156	8-amino-7-oxononanoate synthase activity
AMD21_RS02525	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AMD21_RS02530	COG1040	competence protein
AMD21_RS02535	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMD21_RS02610	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMD21_RS02680	COG1511	domain protein
AMD21_RS02680	COG3264	Mechanosensitive ion channel
AMD21_RS02685	COG1368	sulfuric ester hydrolase activity
AMD21_RS02690	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMD21_RS02695	COG2354	Protein conserved in bacteria
AMD21_RS02705	COG0297	glycogen (starch) synthase activity
AMD21_RS02710	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMD21_RS02715	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AMD21_RS02740	COG0702	epimerase
AMD21_RS02745	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS02780	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD21_RS02785	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS02795	COG0513	Belongs to the DEAD box helicase family
AMD21_RS02815	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AMD21_RS02825	COG3483	tryptophan 2,3-dioxygenase activity
AMD21_RS02830	COG3104	oligopeptide transport
AMD21_RS02850	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AMD21_RS02865	COG1320	monovalent cation:proton antiporter activity
AMD21_RS02870	COG2212	antiporter activity
AMD21_RS02880	COG0651	ATP synthesis coupled electron transport
AMD21_RS02885	COG1006	Multisubunit Na H antiporter MnhC subunit
AMD21_RS02890	COG2111	Na H antiporter
AMD21_RS02890	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMD21_RS02910	COG3179	chitinase
AMD21_RS02930	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AMD21_RS02935	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AMD21_RS02950	COG0456	acetyltransferase
AMD21_RS02955	COG1597	lipid kinase activity
AMD21_RS02980	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMD21_RS02985	COG0134	indole-3-glycerol-phosphate synthase activity
AMD21_RS02995	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD21_RS03000	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
AMD21_RS03010	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
AMD21_RS03020	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AMD21_RS03035	COG1051	belongs to the nudix hydrolase family
AMD21_RS03075	COG0316	Belongs to the HesB IscA family
AMD21_RS03100	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AMD21_RS03120	COG2814	Major facilitator Superfamily
AMD21_RS03125	COG0583	DNA-binding transcription factor activity
AMD21_RS03130	COG2814	Major facilitator Superfamily
AMD21_RS03135	COG1289	transmembrane transporter activity
AMD21_RS03145	COG0151	Belongs to the GarS family
AMD21_RS03155	COG0138	bifunctional purine biosynthesis protein purh
AMD21_RS03160	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMD21_RS03165	COG2267	carboxylic ester hydrolase activity
AMD21_RS03170	COG2453	phosphatase
AMD21_RS03170	COG0671	phosphoesterase, PA-phosphatase related
AMD21_RS03195	COG4589	Belongs to the CDS family
AMD21_RS03200	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AMD21_RS03225	COG2264	protein methyltransferase activity
AMD21_RS03240	COG0439	Biotin carboxylase
AMD21_RS03250	COG0511	ligase activity, forming carbon-carbon bonds
AMD21_RS03255	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AMD21_RS03265	COG1324	tolerance protein
AMD21_RS03290	COG0300	oxidoreductase activity
AMD21_RS03295	COG2356	endonuclease I
AMD21_RS03305	COG0459	protein refolding
AMD21_RS03320	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AMD21_RS03335	COG3386	PFAM SMP-30 Gluconolaconase
AMD21_RS03345	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AMD21_RS03350	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AMD21_RS03370	COG0778	Nitroreductase
AMD21_RS03375	COG2353	YceI-like domain
AMD21_RS03405	COG3052	prosthetic group binding
AMD21_RS03430	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMD21_RS03440	COG1802	Transcriptional regulator
AMD21_RS03485	COG2801	Transposase and inactivated derivatives
AMD21_RS03495	COG4221	oxidoreductase activity
AMD21_RS03510	COG4221	oxidoreductase activity
AMD21_RS03520	COG0435	Glutathione S-transferase
AMD21_RS03545	COG2409	Drug exporters of the RND superfamily
AMD21_RS03550	COG1506	peptidase
AMD21_RS03550	COG0823	Involved in the tonB-independent uptake of proteins
AMD21_RS03590	COG0697	spore germination
AMD21_RS03605	COG1113	amino acid transport
AMD21_RS03625	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
AMD21_RS03660	COG5001	Diguanylate cyclase
AMD21_RS03665	COG0840	transmembrane signaling receptor activity
AMD21_RS03670	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD21_RS03670	COG5297	Belongs to the glycosyl hydrolase family 6
AMD21_RS03675	COG0659	secondary active sulfate transmembrane transporter activity
AMD21_RS03695	COG2943	transferase activity, transferring hexosyl groups
AMD21_RS03705	COG3275	phosphorelay sensor kinase activity
AMD21_RS03715	COG0181	hydroxymethylbilane synthase activity
AMD21_RS03740	COG1505	serine-type exopeptidase activity
AMD21_RS03745	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMD21_RS03750	COG0436	Aminotransferase
AMD21_RS03760	COG2832	Protein of unknown function (DUF454)
AMD21_RS03770	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMD21_RS03780	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AMD21_RS03785	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AMD21_RS03790	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AMD21_RS03815	COG2226	methyltransferase
AMD21_RS03820	COG3300	MHYT domain
AMD21_RS03820	COG5001	Diguanylate cyclase
AMD21_RS03825	COG0308	aminopeptidase N
AMD21_RS03875	COG3284	Transcriptional regulator
AMD21_RS03880	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD21_RS03885	COG1077	Cell shape determining protein MreB Mrl
AMD21_RS03890	COG1792	Involved in formation and maintenance of cell shape
AMD21_RS03905	COG0772	Belongs to the SEDS family
AMD21_RS03915	COG2951	lytic endotransglycosylase activity
AMD21_RS03920	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMD21_RS03930	COG1686	Belongs to the peptidase S11 family
AMD21_RS03940	COG2921	Belongs to the UPF0250 family
AMD21_RS03945	COG0321	lipoyl(octanoyl) transferase activity
AMD21_RS03950	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMD21_RS03965	COG0583	DNA-binding transcription factor activity
AMD21_RS03975	COG1056	cytidyltransferase-related domain
AMD21_RS03975	COG1051	belongs to the nudix hydrolase family
AMD21_RS04010	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
AMD21_RS04015	COG0673	inositol 2-dehydrogenase activity
AMD21_RS04020	COG2823	Periplasmic or secreted lipoprotein
AMD21_RS04025	COG4251	negative regulation of phosphorylation
AMD21_RS04030	COG0784	Response regulator, receiver
AMD21_RS04035	COG4191	Histidine kinase
AMD21_RS04040	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AMD21_RS04095	COG1459	type II secretion system
AMD21_RS04160	COG2188	Transcriptional regulator
AMD21_RS04170	COG1609	Transcriptional regulator
AMD21_RS04175	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMD21_RS04180	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AMD21_RS04190	COG0617	tRNA 3'-terminal CCA addition
AMD21_RS04195	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
AMD21_RS04200	COG1012	belongs to the aldehyde dehydrogenase family
AMD21_RS04205	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMD21_RS04215	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMD21_RS04230	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AMD21_RS04235	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMD21_RS04280	COG3791	Glutathione-dependent formaldehyde-activating
AMD21_RS04295	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMD21_RS04305	COG0697	spore germination
AMD21_RS04315	COG0488	(ABC) transporter
AMD21_RS04325	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMD21_RS04330	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AMD21_RS04340	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMD21_RS04340	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMD21_RS04360	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AMD21_RS04365	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMD21_RS04370	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AMD21_RS04390	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AMD21_RS04395	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AMD21_RS04400	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
AMD21_RS04405	COG2205	protein histidine kinase activity
AMD21_RS04410	COG0745	RESPONSE REGULATOR receiver
AMD21_RS04425	COG0277	FAD linked oxidase domain protein
AMD21_RS04430	COG1988	membrane-bound metal-dependent
AMD21_RS04435	COG0792	nuclease activity
AMD21_RS04465	COG0275	rRNA processing
AMD21_RS04470	COG3116	cell division
AMD21_RS04480	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMD21_RS04485	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMD21_RS04490	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMD21_RS04500	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AMD21_RS04505	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMD21_RS04510	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMD21_RS04515	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AMD21_RS04530	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AMD21_RS04540	COG0739	heme binding
AMD21_RS04545	COG0653	protein targeting
AMD21_RS04550	COG0494	nUDIX hydrolase
AMD21_RS04560	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMD21_RS04570	COG0604	alcohol dehydrogenase
AMD21_RS04570	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS04570	COG3321	synthase
AMD21_RS04590	COG0366	Alpha amylase catalytic
AMD21_RS04620	COG2226	methyltransferase
AMD21_RS04625	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AMD21_RS04635	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AMD21_RS04670	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AMD21_RS04680	COG4106	trans-aconitate 2-methyltransferase activity
AMD21_RS04685	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMD21_RS04695	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD21_RS04700	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AMD21_RS04705	COG0667	Aldo Keto reductase
AMD21_RS04715	COG4771	TonB-dependent receptor
AMD21_RS04735	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMD21_RS04740	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AMD21_RS04750	COG2175	clavaminate synthase activity
AMD21_RS04760	COG4181	ATPase activity
AMD21_RS04775	COG0642	Histidine kinase
AMD21_RS04785	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AMD21_RS04805	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AMD21_RS04810	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMD21_RS04825	COG3829	transcription factor binding
AMD21_RS04835	COG1116	anion transmembrane transporter activity
AMD21_RS04840	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMD21_RS04850	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMD21_RS04855	COG0431	NADPH-dependent FMN reductase
AMD21_RS04880	COG0747	negative chemotaxis
AMD21_RS04890	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMD21_RS04900	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMD21_RS04905	COG2967	ApaG domain
AMD21_RS04910	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMD21_RS04915	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AMD21_RS04920	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMD21_RS04925	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AMD21_RS04935	COG0123	including yeast histone deacetylase and acetoin utilization protein
AMD21_RS04940	COG2096	Adenosyltransferase
AMD21_RS04950	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD21_RS04955	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD21_RS04985	COG3384	dioxygenase
AMD21_RS04990	COG0583	DNA-binding transcription factor activity
AMD21_RS05005	COG1024	Enoyl-CoA hydratase
AMD21_RS05025	COG3386	PFAM SMP-30 Gluconolaconase
AMD21_RS05035	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
AMD21_RS05060	COG0697	spore germination
AMD21_RS05070	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMD21_RS05090	COG5002	protein histidine kinase activity
AMD21_RS05090	COG2205	protein histidine kinase activity
AMD21_RS05090	COG0784	Response regulator, receiver
AMD21_RS05095	COG2197	response regulator
AMD21_RS05105	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMD21_RS05115	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AMD21_RS05120	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMD21_RS05125	COG0583	DNA-binding transcription factor activity
AMD21_RS05130	COG3634	alkyl hydroperoxide reductase activity
AMD21_RS05140	COG2890	protein-(glutamine-N5) methyltransferase activity
AMD21_RS05160	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMD21_RS05160	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMD21_RS05190	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AMD21_RS05220	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AMD21_RS05235	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMD21_RS05240	COG1404	Belongs to the peptidase S8 family
AMD21_RS05245	COG1404	Belongs to the peptidase S8 family
AMD21_RS05250	COG1404	Belongs to the peptidase S8 family
AMD21_RS05255	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AMD21_RS05280	COG1295	ribonuclease BN
AMD21_RS05285	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD21_RS05290	COG1254	Belongs to the acylphosphatase family
AMD21_RS05305	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMD21_RS05315	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AMD21_RS05320	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AMD21_RS05330	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AMD21_RS05335	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AMD21_RS05345	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMD21_RS05350	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AMD21_RS05355	COG0193	aminoacyl-tRNA hydrolase activity
AMD21_RS05360	COG0012	GTP binding
AMD21_RS05380	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMD21_RS05395	COG0250	Participates in transcription elongation, termination and antitermination
AMD21_RS05400	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMD21_RS05405	COG0081	regulation of translation
AMD21_RS05410	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AMD21_RS05415	COG0222	ribosome binding
AMD21_RS05420	COG0085	RNA polymerase activity
AMD21_RS05425	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AMD21_RS05430	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AMD21_RS05435	COG0049	tRNA binding
AMD21_RS05440	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMD21_RS05445	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMD21_RS05450	COG0051	transcription antitermination factor activity, RNA binding
AMD21_RS05455	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AMD21_RS05460	COG0088	Forms part of the polypeptide exit tunnel
AMD21_RS05465	COG0089	rRNA binding
AMD21_RS05470	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AMD21_RS05475	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AMD21_RS05485	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AMD21_RS05490	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AMD21_RS05495	COG0255	Belongs to the universal ribosomal protein uL29 family
AMD21_RS05500	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AMD21_RS05510	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AMD21_RS05515	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AMD21_RS05525	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AMD21_RS05530	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AMD21_RS05535	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AMD21_RS05545	COG1841	ribosomal large subunit assembly
AMD21_RS05550	COG0200	Binds to the 23S rRNA
AMD21_RS05555	COG0201	protein transport
AMD21_RS05580	COG0203	ribosomal protein L17
AMD21_RS05585	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AMD21_RS05600	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
AMD21_RS05610	COG0154	amidase activity
AMD21_RS05620	COG1217	gtp-binding protein TYPA
AMD21_RS05625	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMD21_RS05630	COG0039	L-malate dehydrogenase activity
AMD21_RS05635	COG0625	glutathione transferase activity
AMD21_RS05645	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMD21_RS05645	COG1902	pentaerythritol trinitrate reductase activity
AMD21_RS05650	COG0604	alcohol dehydrogenase
AMD21_RS05680	COG0156	8-amino-7-oxononanoate synthase activity
AMD21_RS05685	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AMD21_RS05690	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AMD21_RS05695	COG4208	sulfate ABC transporter
AMD21_RS05700	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AMD21_RS05710	COG1063	alcohol dehydrogenase
AMD21_RS05740	COG0406	alpha-ribazole phosphatase activity
AMD21_RS05745	COG0285	dihydrofolate synthase activity
AMD21_RS05765	COG2833	Protein of unknown function (DUF455)
AMD21_RS05775	COG3291	Pkd domain containing protein
AMD21_RS05785	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD21_RS05790	COG0671	phosphoesterase, PA-phosphatase related
AMD21_RS05795	COG0438	transferase activity, transferring glycosyl groups
AMD21_RS05805	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AMD21_RS05820	COG4783	chaperone-mediated protein folding
AMD21_RS05835	COG0473	3-isopropylmalate dehydrogenase activity
AMD21_RS05965	COG2801	Transposase and inactivated derivatives
AMD21_RS05980	COG3852	Histidine kinase
AMD21_RS05990	COG0544	peptidyl-prolyl cis-trans isomerase activity
AMD21_RS06000	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AMD21_RS06030	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMD21_RS06040	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD21_RS06050	COG0328	RNA-DNA hybrid ribonuclease activity
AMD21_RS06055	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMD21_RS06060	COG0631	protein serine/threonine phosphatase activity
AMD21_RS06075	COG0859	PFAM glycosyl transferase family 9
AMD21_RS06080	COG3642	lipopolysaccharide core region biosynthetic process
AMD21_RS06085	COG1234	tRNA 3'-trailer cleavage
AMD21_RS06090	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMD21_RS06100	COG0315	cyclic pyranopterin monophosphate synthase activity
AMD21_RS06105	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AMD21_RS06110	COG0314	molybdopterin synthase activity
AMD21_RS06165	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AMD21_RS06170	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AMD21_RS06175	COG0537	adenosine 5'-monophosphoramidase activity
AMD21_RS06195	COG0714	Associated with various cellular activities
AMD21_RS06215	COG0424	maF-like protein
AMD21_RS06220	COG1399	metal-binding, possibly nucleic acid-binding protein
AMD21_RS06225	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AMD21_RS06230	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD21_RS06245	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS06260	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AMD21_RS06265	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMD21_RS06290	COG3829	transcription factor binding
AMD21_RS06310	COG3609	addiction module antidote protein, CC2985 family
AMD21_RS06330	COG2373	Large extracellular alpha-helical protein
AMD21_RS06345	COG4953	penicillin-binding protein 1C
AMD21_RS06355	COG0678	peroxiredoxin activity
AMD21_RS06375	COG0330	HflC and HflK could
AMD21_RS06380	COG0330	HflC and HflK could
AMD21_RS06390	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AMD21_RS06395	COG0308	aminopeptidase N
AMD21_RS06405	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS06410	COG1309	transcriptional regulator
AMD21_RS06480	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMD21_RS06490	COG3387	PFAM Glycoside hydrolase 15-related
AMD21_RS06495	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS06500	COG3537	Alpha-1,2-mannosidase
AMD21_RS06520	COG0492	ferredoxin-NADP+ reductase activity
AMD21_RS06545	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMD21_RS06550	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AMD21_RS06555	COG2080	2 iron, 2 sulfur cluster binding
AMD21_RS06590	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMD21_RS06605	COG0587	DNA-directed DNA polymerase activity
AMD21_RS06635	COG1506	peptidase
AMD21_RS06635	COG0823	Involved in the tonB-independent uptake of proteins
AMD21_RS06650	COG2207	Transcriptional regulator
AMD21_RS06650	COG1917	Cupin 2, conserved barrel domain protein
AMD21_RS06665	COG0753	catalase activity
AMD21_RS06670	COG0656	L-ascorbic acid biosynthetic process
AMD21_RS06680	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMD21_RS06680	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMD21_RS06685	COG2814	Major facilitator Superfamily
AMD21_RS06700	COG2194	sulfuric ester hydrolase activity
AMD21_RS06715	COG0745	RESPONSE REGULATOR receiver
AMD21_RS06720	COG0642	Histidine kinase
AMD21_RS06730	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AMD21_RS06735	COG2894	cell division
AMD21_RS06740	COG0850	regulation of cytokinetic process
AMD21_RS06755	COG4585	Histidine kinase
AMD21_RS06760	COG2197	response regulator
AMD21_RS06775	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
AMD21_RS06800	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AMD21_RS06810	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AMD21_RS06830	COG1946	Acyl-CoA thioesterase
AMD21_RS06845	COG0824	Thioesterase
AMD21_RS06850	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AMD21_RS06855	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AMD21_RS06860	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AMD21_RS06865	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AMD21_RS06870	COG0268	Binds directly to 16S ribosomal RNA
AMD21_RS06880	COG0196	riboflavin kinase activity
AMD21_RS06885	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AMD21_RS06890	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AMD21_RS06895	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AMD21_RS06910	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMD21_RS06915	COG1845	cytochrome c oxidase, subunit III
AMD21_RS06920	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AMD21_RS06935	COG3152	Membrane
AMD21_RS06945	COG2207	Transcriptional regulator
AMD21_RS06950	COG0326	Molecular chaperone. Has ATPase activity
AMD21_RS06960	COG1366	Belongs to the anti-sigma-factor antagonist family
AMD21_RS06965	COG1366	Belongs to the anti-sigma-factor antagonist family
AMD21_RS06970	COG2172	sigma factor antagonist activity
AMD21_RS06995	COG4771	TonB-dependent receptor
AMD21_RS07005	COG5507	3-demethylubiquinone-9 3-methyltransferase
AMD21_RS07010	COG2205	protein histidine kinase activity
AMD21_RS07020	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMD21_RS07025	COG4999	Histidine kinase
AMD21_RS07025	COG2205	protein histidine kinase activity
AMD21_RS07025	COG3850	Histidine kinase
AMD21_RS07025	COG3437	response regulator, receiver
AMD21_RS07030	COG0784	Response regulator, receiver
AMD21_RS07030	COG4191	Histidine kinase
AMD21_RS07060	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMD21_RS07065	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMD21_RS07075	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMD21_RS07080	COG0228	four-way junction DNA binding
AMD21_RS07085	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AMD21_RS07090	COG0336	Belongs to the RNA methyltransferase TrmD family
AMD21_RS07095	COG0335	large ribosomal subunit rRNA binding
AMD21_RS07125	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
AMD21_RS07135	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AMD21_RS07145	COG3209	COG3209 Rhs family protein
AMD21_RS07165	COG3250	beta-galactosidase activity
AMD21_RS07170	COG3867	Arabinogalactan endo-beta-1,4-galactanase
AMD21_RS07190	COG1960	acyl-CoA dehydrogenase activity
AMD21_RS07195	COG1024	Enoyl-CoA hydratase
AMD21_RS07215	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMD21_RS07215	COG1024	Enoyl-CoA hydratase
AMD21_RS07230	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMD21_RS07235	COG0481	GTPase activity
AMD21_RS07250	COG0571	ribonuclease III activity
AMD21_RS07255	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AMD21_RS07260	COG1381	Involved in DNA repair and RecF pathway recombination
AMD21_RS07270	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMD21_RS07275	COG2954	triphosphatase activity
AMD21_RS07280	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AMD21_RS07285	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
AMD21_RS07290	COG3046	protein related to deoxyribodipyrimidine photolyase
AMD21_RS07295	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD21_RS07300	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
AMD21_RS07305	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AMD21_RS07310	COG1278	Cold shock
AMD21_RS07315	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD21_RS07325	COG1201	RNA secondary structure unwinding
AMD21_RS07330	COG1793	dna ligase
AMD21_RS07340	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMD21_RS07340	COG1793	dna ligase
AMD21_RS07370	COG0183	Belongs to the thiolase family
AMD21_RS07390	COG1451	nucleotide metabolic process
AMD21_RS07395	COG5487	UPF0391 membrane protein
AMD21_RS07405	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMD21_RS07425	COG1077	Cell shape determining protein MreB Mrl
AMD21_RS07430	COG1047	Peptidyl-prolyl cis-trans
AMD21_RS07440	COG2824	Alkylphosphonate utilization operon protein PhnA
AMD21_RS07445	COG1902	pentaerythritol trinitrate reductase activity
AMD21_RS07450	COG2814	Major facilitator Superfamily
AMD21_RS07485	COG0392	lysyltransferase activity
AMD21_RS07485	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
AMD21_RS07495	COG0251	oxidation-reduction process
AMD21_RS07500	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMD21_RS07515	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMD21_RS07540	COG1595	DNA-templated transcription, initiation
AMD21_RS07560	COG2878	Part of a membrane complex involved in electron transport
AMD21_RS07570	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD21_RS07570	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD21_RS07585	COG1131	(ABC) transporter
AMD21_RS07590	COG0346	lactoylglutathione lyase activity
AMD21_RS07595	COG0833	amino acid
AMD21_RS07600	COG2040	homocysteine
AMD21_RS07610	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AMD21_RS07630	COG1695	Transcriptional regulator
AMD21_RS07650	COG1981	membrane
AMD21_RS07665	COG0825	malonyl-CoA metabolic process
AMD21_RS07675	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AMD21_RS07680	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD21_RS07685	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD21_RS07690	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD21_RS07695	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMD21_RS07710	COG0750	zinc metalloprotease
AMD21_RS07715	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
AMD21_RS07720	COG0575	Belongs to the CDS family
AMD21_RS07725	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AMD21_RS07730	COG0233	cytoplasmic translational termination
AMD21_RS07735	COG0528	UMP kinase activity
AMD21_RS07745	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AMD21_RS07750	COG0052	Belongs to the universal ribosomal protein uS2 family
AMD21_RS07790	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
AMD21_RS07800	COG1393	Belongs to the ArsC family
AMD21_RS07805	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD21_RS07810	COG0367	asparagine synthase
AMD21_RS07820	COG4774	siderophore transport
AMD21_RS07840	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMD21_RS07870	COG1566	PFAM secretion protein HlyD family protein
AMD21_RS07875	COG2814	Major facilitator Superfamily
AMD21_RS07925	COG0339	signal peptide processing
AMD21_RS07930	COG0386	Belongs to the glutathione peroxidase family
AMD21_RS07985	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AMD21_RS07990	COG0084	hydrolase, TatD family'
AMD21_RS08005	COG1960	acyl-CoA dehydrogenase activity
AMD21_RS08025	COG0367	asparagine synthase
AMD21_RS08035	COG0305	Participates in initiation and elongation during chromosome replication
AMD21_RS08040	COG0415	Belongs to the DNA photolyase family
AMD21_RS08050	COG0583	DNA-binding transcription factor activity
AMD21_RS08095	COG3706	GGDEF domain
AMD21_RS08200	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AMD21_RS08215	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD21_RS08225	COG0497	DNA recombination
AMD21_RS08230	COG1420	regulation of RNA biosynthetic process
AMD21_RS08235	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AMD21_RS08240	COG0443	Heat shock 70 kDa protein
AMD21_RS08245	COG0484	heat shock protein binding
AMD21_RS08250	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
AMD21_RS08280	COG0583	DNA-binding transcription factor activity
AMD21_RS08285	COG1132	(ABC) transporter
AMD21_RS08320	COG2850	peptidyl-arginine hydroxylation
AMD21_RS08340	COG1253	flavin adenine dinucleotide binding
AMD21_RS08370	COG1131	(ABC) transporter
AMD21_RS08375	COG1725	Transcriptional regulator
AMD21_RS08380	COG0386	Belongs to the glutathione peroxidase family
AMD21_RS08395	COG2900	Belongs to the SlyX family
AMD21_RS08420	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD21_RS08430	COG0646	methionine synthase
AMD21_RS08430	COG1410	methionine synthase
AMD21_RS08435	COG0646	methionine synthase
AMD21_RS08435	COG1410	methionine synthase
AMD21_RS08440	COG2226	methyltransferase
AMD21_RS08445	COG1960	acyl-CoA dehydrogenase activity
AMD21_RS08460	COG0557	exoribonuclease II activity
AMD21_RS08470	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMD21_RS08480	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMD21_RS08490	COG0704	Plays a role in the regulation of phosphate uptake
AMD21_RS08495	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMD21_RS08500	COG0581	inorganic phosphate transmembrane transporter activity
AMD21_RS08505	COG0573	inorganic phosphate transmembrane transporter activity
AMD21_RS08510	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AMD21_RS08535	COG0659	secondary active sulfate transmembrane transporter activity
AMD21_RS08540	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AMD21_RS08550	COG1024	Enoyl-CoA hydratase
AMD21_RS08560	COG0494	nUDIX hydrolase
AMD21_RS08595	COG0488	(ABC) transporter
AMD21_RS08600	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMD21_RS08600	COG0116	Belongs to the methyltransferase superfamily
AMD21_RS08605	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMD21_RS08630	COG2925	Exonuclease
AMD21_RS08635	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMD21_RS08640	COG3844	kynureninase activity
AMD21_RS08650	COG0662	Cupin 2, conserved barrel domain protein
AMD21_RS08655	COG0288	reversible hydration of carbon dioxide
AMD21_RS08715	COG2808	Putative FMN-binding domain
AMD21_RS08735	COG0017	Asparaginyl-tRNA synthetase
AMD21_RS08740	COG0316	Belongs to the HesB IscA family
AMD21_RS08745	COG0360	Binds together with S18 to 16S ribosomal RNA
AMD21_RS08750	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AMD21_RS08755	COG0359	binds to the 23S rRNA
AMD21_RS08765	COG3115	cell septum assembly
AMD21_RS08775	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMD21_RS08780	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMD21_RS08785	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AMD21_RS08795	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
AMD21_RS08805	COG4993	Dehydrogenase
AMD21_RS08815	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AMD21_RS08825	COG2986	histidine ammonia-lyase
AMD21_RS08830	COG1228	amidohydrolase
AMD21_RS08875	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AMD21_RS08880	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AMD21_RS08885	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMD21_RS08890	COG0077	Prephenate dehydratase
AMD21_RS08890	COG1605	Chorismate mutase
AMD21_RS08895	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMD21_RS08910	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AMD21_RS08915	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AMD21_RS08920	COG0583	DNA-binding transcription factor activity
AMD21_RS08935	COG0840	transmembrane signaling receptor activity
AMD21_RS08970	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
AMD21_RS08975	COG0784	Response regulator, receiver
AMD21_RS08975	COG4191	Histidine kinase
AMD21_RS08990	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD21_RS09000	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMD21_RS09010	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMD21_RS09025	COG1595	DNA-templated transcription, initiation
AMD21_RS09080	COG2244	polysaccharide biosynthetic process
AMD21_RS09110	COG2264	protein methyltransferase activity
AMD21_RS09120	COG0438	transferase activity, transferring glycosyl groups
AMD21_RS09135	COG1136	(ABC) transporter
AMD21_RS09145	COG0477	Major facilitator Superfamily
AMD21_RS09150	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMD21_RS09165	COG1253	flavin adenine dinucleotide binding
AMD21_RS09175	COG0306	phosphate transporter
AMD21_RS09200	COG0504	CTP synthase activity
AMD21_RS09205	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AMD21_RS09215	COG0148	phosphopyruvate hydratase activity
AMD21_RS09220	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AMD21_RS09225	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
AMD21_RS09230	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AMD21_RS09235	COG0585	pseudouridine synthase activity
AMD21_RS09240	COG2840	Smr protein MutS2
AMD21_RS09245	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AMD21_RS09250	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMD21_RS09255	COG1238	metal cluster binding
AMD21_RS09270	COG1534	Rna-binding protein
AMD21_RS09275	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AMD21_RS09285	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AMD21_RS09290	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMD21_RS09300	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AMD21_RS09305	COG1546	Belongs to the CinA family
AMD21_RS09315	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMD21_RS09320	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMD21_RS09325	COG2137	regulation of response to DNA damage stimulus
AMD21_RS09330	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMD21_RS09335	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
AMD21_RS09350	COG1741	Belongs to the pirin family
AMD21_RS09360	COG0583	DNA-binding transcription factor activity
AMD21_RS09385	COG0351	phosphomethylpyrimidine kinase
AMD21_RS09385	COG0352	thiamine-phosphate diphosphorylase activity
AMD21_RS09400	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AMD21_RS09405	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMD21_RS09420	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMD21_RS09430	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AMD21_RS09435	COG3734	2-keto-3-deoxy-galactonokinase
AMD21_RS09445	COG4948	Mandelate Racemase Muconate Lactonizing
AMD21_RS09450	COG0800	Aldolase
AMD21_RS09490	COG1501	Belongs to the glycosyl hydrolase 31 family
AMD21_RS09500	COG1070	Carbohydrate kinase
AMD21_RS09505	COG2115	Belongs to the xylose isomerase family
AMD21_RS09510	COG0477	Major facilitator Superfamily
AMD21_RS09520	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMD21_RS09525	COG1469	GTP cyclohydrolase I activity
AMD21_RS09545	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AMD21_RS09550	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AMD21_RS09555	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
AMD21_RS09560	COG0166	Belongs to the GPI family
AMD21_RS09580	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD21_RS09590	COG2203	Gaf domain
AMD21_RS09590	COG4251	negative regulation of phosphorylation
AMD21_RS09590	COG5001	Diguanylate cyclase
AMD21_RS09590	COG3706	GGDEF domain
AMD21_RS09595	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
AMD21_RS09600	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AMD21_RS09610	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AMD21_RS09615	COG0671	phosphoesterase, PA-phosphatase related
AMD21_RS09625	COG1794	racemase activity, acting on amino acids and derivatives
AMD21_RS09630	COG0697	spore germination
AMD21_RS09635	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMD21_RS09640	COG0167	dihydroorotate dehydrogenase activity
AMD21_RS09655	COG1012	belongs to the aldehyde dehydrogenase family
AMD21_RS09670	COG1215	transferase activity, transferring glycosyl groups
AMD21_RS09675	COG1649	PFAM Uncharacterised BCR, COG1649
AMD21_RS09675	COG0726	polysaccharide deacetylase
AMD21_RS09690	COG3210	domain, Protein
AMD21_RS09695	COG3210	domain, Protein
AMD21_RS09735	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD21_RS09740	COG0124	histidyl-tRNA synthetase
AMD21_RS09750	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AMD21_RS09755	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AMD21_RS09760	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMD21_RS09765	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMD21_RS09765	COG0131	Imidazoleglycerol-phosphate dehydratase
AMD21_RS09770	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AMD21_RS09775	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
AMD21_RS09780	COG0107	imidazoleglycerol-phosphate synthase activity
AMD21_RS09785	COG0140	phosphoribosyl-ATP diphosphatase activity
AMD21_RS09785	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMD21_RS09800	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
AMD21_RS09805	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
AMD21_RS09810	COG0235	Class ii aldolase
AMD21_RS09815	COG0531	amino acid
AMD21_RS09820	COG0531	amino acid
AMD21_RS09830	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMD21_RS09835	COG0277	FAD linked oxidase domain protein
AMD21_RS09855	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMD21_RS09900	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMD21_RS09905	COG2258	MOSC domain
AMD21_RS09910	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AMD21_RS09915	COG0505	Belongs to the CarA family
AMD21_RS09925	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AMD21_RS09930	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMD21_RS09940	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AMD21_RS09985	COG3279	Response regulator of the LytR AlgR family
AMD21_RS09990	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AMD21_RS09995	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AMD21_RS10005	COG2205	protein histidine kinase activity
AMD21_RS10005	COG2198	Histidine kinase
AMD21_RS10005	COG0784	Response regulator, receiver
AMD21_RS10010	COG1024	Enoyl-CoA hydratase
AMD21_RS10015	COG0318	PFAM AMP-dependent synthetase and ligase
AMD21_RS10045	COG2267	carboxylic ester hydrolase activity
AMD21_RS10055	COG2201	protein-glutamate methylesterase activity
AMD21_RS10060	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
AMD21_RS10070	COG0840	transmembrane signaling receptor activity
AMD21_RS10075	COG0840	transmembrane signaling receptor activity
AMD21_RS10080	COG0840	transmembrane signaling receptor activity
AMD21_RS10090	COG0840	transmembrane signaling receptor activity
AMD21_RS10095	COG0840	transmembrane signaling receptor activity
AMD21_RS10100	COG0840	transmembrane signaling receptor activity
AMD21_RS10105	COG0840	transmembrane signaling receptor activity
AMD21_RS10120	COG0840	transmembrane signaling receptor activity
AMD21_RS10135	COG0840	transmembrane signaling receptor activity
AMD21_RS10140	COG0643	Histidine kinase
AMD21_RS10140	COG2198	Histidine kinase
AMD21_RS10145	COG0745	RESPONSE REGULATOR receiver
AMD21_RS10155	COG0835	chemotaxis
AMD21_RS10165	COG1360	Flagellar Motor Protein
AMD21_RS10170	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AMD21_RS10255	COG0641	radical SAM
AMD21_RS10270	COG0784	Response regulator, receiver
AMD21_RS10270	COG0643	Histidine kinase
AMD21_RS10270	COG2198	Histidine kinase
AMD21_RS10300	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMD21_RS10330	COG1684	flagellar biosynthetic protein fliR
AMD21_RS10345	COG3190	flagellar
AMD21_RS10395	COG1677	Flagellar hook-basal body complex protein FliE
AMD21_RS10425	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS10430	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS10435	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD21_RS10455	COG2201	protein-glutamate methylesterase activity
AMD21_RS10485	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AMD21_RS10490	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMD21_RS10495	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AMD21_RS10505	COG1705	Flagellar rod assembly protein muramidase FlgJ
AMD21_RS10505	COG3951	Flagellar rod assembly protein muramidase FlgJ
AMD21_RS10510	COG1706	bacterial-type flagellum-dependent cell motility
AMD21_RS10515	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AMD21_RS10525	COG4787	bacterial-type flagellum-dependent cell motility
AMD21_RS10535	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AMD21_RS10540	COG1558	bacterial-type flagellum-dependent cell motility
AMD21_RS10550	COG0784	Response regulator, receiver
AMD21_RS10550	COG0835	chemotaxis
AMD21_RS10570	COG5002	protein histidine kinase activity
AMD21_RS10600	COG2915	High frequency lysogenization protein hflD homolog
AMD21_RS10605	COG0482	sulfurtransferase activity
AMD21_RS10620	COG0542	response to heat
AMD21_RS10630	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AMD21_RS10640	COG0492	ferredoxin-NADP+ reductase activity
AMD21_RS10645	COG1674	ftsk spoiiie
AMD21_RS10655	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AMD21_RS10665	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMD21_RS10670	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AMD21_RS10680	COG0183	Belongs to the thiolase family
AMD21_RS10685	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMD21_RS10685	COG1024	Enoyl-CoA hydratase
AMD21_RS10700	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AMD21_RS10710	COG1426	Protein conserved in bacteria
AMD21_RS10720	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD21_RS10725	COG1160	GTP binding
AMD21_RS10730	COG0303	'Molybdopterin
AMD21_RS10735	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMD21_RS10770	COG0708	Exodeoxyribonuclease III
AMD21_RS10780	COG0303	'Molybdopterin
AMD21_RS10785	COG0746	molybdenum cofactor guanylyltransferase activity
AMD21_RS10800	COG1914	H( )-stimulated, divalent metal cation uptake system
AMD21_RS10815	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AMD21_RS10820	COG0668	transmembrane transport
AMD21_RS10830	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AMD21_RS10845	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS10850	COG1183	phosphatidylcholine synthase activity
AMD21_RS10860	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMD21_RS10875	COG0723	plastoquinol--plastocyanin reductase activity
AMD21_RS10875	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD21_RS10885	COG2183	response to ionizing radiation
AMD21_RS10890	COG2205	protein histidine kinase activity
AMD21_RS10890	COG0784	Response regulator, receiver
AMD21_RS10955	COG0800	Aldolase
AMD21_RS10960	COG0129	dihydroxy-acid dehydratase activity
AMD21_RS10965	COG0363	glucosamine-6-phosphate deaminase activity
AMD21_RS10970	COG0837	glucose binding
AMD21_RS10975	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMD21_RS10995	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AMD21_RS11010	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AMD21_RS11015	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AMD21_RS11025	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMD21_RS11030	COG1136	(ABC) transporter
AMD21_RS11045	COG0811	peptide transport
AMD21_RS11055	COG1132	(ABC) transporter
AMD21_RS11060	COG1663	tetraacyldisaccharide 4'-kinase activity
AMD21_RS11065	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AMD21_RS11070	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMD21_RS11080	COG0322	excinuclease ABC activity
AMD21_RS11085	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMD21_RS11105	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMD21_RS11110	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMD21_RS11125	COG2801	Transposase and inactivated derivatives
AMD21_RS11135	COG0582	viral genome integration into host DNA
AMD21_RS11145	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AMD21_RS11165	COG1054	Belongs to the UPF0176 family
AMD21_RS11175	COG1530	ribonuclease E activity
AMD21_RS11185	COG3064	Membrane
AMD21_RS11190	COG0428	transporter
AMD21_RS11200	COG2154	pterin-4-alpha-carbinolamine dehydratase
AMD21_RS11205	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AMD21_RS11205	COG0316	Belongs to the HesB IscA family
AMD21_RS11250	COG2226	methyltransferase
AMD21_RS11250	COG1073	alpha beta
AMD21_RS11260	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS11290	COG1238	metal cluster binding
AMD21_RS11325	COG3279	Response regulator of the LytR AlgR family
AMD21_RS11370	COG4566	intracellular signal transduction
AMD21_RS11380	COG5001	Diguanylate cyclase
AMD21_RS11395	COG3685	Protein conserved in bacteria
AMD21_RS11410	COG1648	precorrin-2 dehydrogenase activity
AMD21_RS11410	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AMD21_RS11425	COG2814	Major facilitator Superfamily
AMD21_RS11445	COG1335	isochorismatase
AMD21_RS11460	COG2197	response regulator
AMD21_RS11480	COG0583	DNA-binding transcription factor activity
AMD21_RS11485	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMD21_RS11490	COG3002	Belongs to the UPF0753 family
AMD21_RS11505	COG1396	sequence-specific DNA binding
AMD21_RS11510	COG5489	Protein of unknown function (DUF736)
AMD21_RS11515	COG2003	Belongs to the UPF0758 family
AMD21_RS11540	COG0582	viral genome integration into host DNA
AMD21_RS11555	COG4774	siderophore transport
AMD21_RS11570	COG2336	PFAM SpoVT AbrB
AMD21_RS11595	COG4206	TonB-dependent receptor
AMD21_RS11615	COG2273	Hydrolase Family 16
AMD21_RS11615	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
AMD21_RS11635	COG2274	protein secretion by the type I secretion system
AMD21_RS11685	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMD21_RS11690	COG0270	DNA (cytosine-5-)-methyltransferase activity
AMD21_RS11740	COG4804	nuclease activity
AMD21_RS11760	COG5006	permease, DMT superfamily
AMD21_RS11775	COG2249	NAD(P)H dehydrogenase (quinone) activity
AMD21_RS11785	COG3938	Belongs to the proline racemase family
AMD21_RS11800	COG2807	transmembrane transport
AMD21_RS11805	COG2207	Transcriptional regulator
AMD21_RS11955	COG0210	DNA helicase
AMD21_RS12035	COG2084	Dehydrogenase
AMD21_RS12055	COG2003	Belongs to the UPF0758 family
AMD21_RS12090	COG0582	viral genome integration into host DNA
AMD21_RS12095	COG0519	Catalyzes the synthesis of GMP from XMP
AMD21_RS12095	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMD21_RS12105	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AMD21_RS12115	COG0475	glutathione-regulated potassium exporter activity
AMD21_RS12115	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMD21_RS12120	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMD21_RS12130	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMD21_RS12135	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AMD21_RS12145	COG0776	regulation of translation
AMD21_RS12150	COG0539	negative regulation of cytoplasmic translation
AMD21_RS12155	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AMD21_RS12170	COG2957	Belongs to the agmatine deiminase family
AMD21_RS12175	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMD21_RS12200	COG0395	ABC-type sugar transport system, permease component
AMD21_RS12205	COG1175	transmembrane transport
AMD21_RS12235	COG2350	Protein conserved in bacteria
AMD21_RS12240	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AMD21_RS12245	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AMD21_RS12250	COG1187	pseudouridine synthase activity
AMD21_RS12270	COG0436	Aminotransferase
AMD21_RS12275	COG4133	protoheme IX ABC transporter activity
AMD21_RS12295	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMD21_RS12300	COG1138	Cytochrome C-type biogenesis protein
AMD21_RS12320	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMD21_RS12325	COG1278	Cold shock
AMD21_RS12330	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AMD21_RS12335	COG4988	ABC transporter
AMD21_RS12345	COG1294	oxidase, subunit
AMD21_RS12370	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AMD21_RS12375	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AMD21_RS12385	COG0165	Argininosuccinate lyase
AMD21_RS12390	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AMD21_RS12400	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMD21_RS12405	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD21_RS12415	COG0137	argininosuccinate synthase activity
AMD21_RS12420	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMD21_RS12430	COG0215	cysteine-tRNA ligase activity
AMD21_RS12435	COG2166	iron-sulfur cluster assembly
AMD21_RS12455	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AMD21_RS12460	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AMD21_RS12485	COG4302	ethanolamine ammonia-lyase activity
AMD21_RS12515	COG2963	transposase activity
AMD21_RS12535	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMD21_RS12540	COG0402	S-adenosylhomocysteine deaminase activity
AMD21_RS12550	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMD21_RS12555	COG1509	lysine 2,3-aminomutase activity
AMD21_RS12560	COG5001	Diguanylate cyclase
AMD21_RS12560	COG3300	MHYT domain
AMD21_RS12575	COG0483	inositol monophosphate 1-phosphatase activity
AMD21_RS12580	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMD21_RS12595	COG0488	(ABC) transporter
AMD21_RS12600	COG0513	Belongs to the DEAD box helicase family
AMD21_RS12605	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AMD21_RS12610	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AMD21_RS12620	COG0625	glutathione transferase activity
AMD21_RS12630	COG4681	YaeQ
AMD21_RS12635	COG2081	HI0933 family
AMD21_RS12645	COG0501	Belongs to the peptidase M48B family
AMD21_RS12650	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMD21_RS12655	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS12675	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMD21_RS12680	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMD21_RS12685	COG0802	atpase or kinase
AMD21_RS12690	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AMD21_RS12690	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMD21_RS12695	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMD21_RS12700	COG1570	exodeoxyribonuclease VII activity
AMD21_RS12710	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AMD21_RS12890	COG0835	chemotaxis
AMD21_RS12895	COG0840	transmembrane signaling receptor activity
AMD21_RS12900	COG2094	Belongs to the DNA glycosylase MPG family
AMD21_RS12905	COG1201	RNA secondary structure unwinding
AMD21_RS12920	COG2969	positive regulation of protein catabolic process
AMD21_RS12925	COG0625	glutathione transferase activity
AMD21_RS12930	COG2857	Cytochrome c1
AMD21_RS12935	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMD21_RS12940	COG0723	plastoquinol--plastocyanin reductase activity
AMD21_RS12945	COG0741	lytic transglycosylase activity
AMD21_RS12960	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMD21_RS12965	COG1702	phosphate starvation-inducible protein PhoH
AMD21_RS12975	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AMD21_RS12985	COG4535	Mg2 and Co2 transporter CorC
AMD21_RS13000	COG1012	belongs to the aldehyde dehydrogenase family
AMD21_RS13010	COG1177	transmembrane transport
AMD21_RS13015	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMD21_RS13020	COG3842	ATPase activity
AMD21_RS13040	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AMD21_RS13055	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AMD21_RS13060	COG0174	glutamine synthetase
AMD21_RS13065	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD21_RS13075	COG2703	oxygen carrier activity
AMD21_RS13080	COG0477	Major facilitator Superfamily
AMD21_RS13090	COG0243	molybdopterin cofactor binding
AMD21_RS13095	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AMD21_RS13100	COG2223	nitrite transmembrane transporter activity
AMD21_RS13105	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMD21_RS13115	COG2733	membrane
AMD21_RS13120	COG5002	protein histidine kinase activity
AMD21_RS13120	COG2205	protein histidine kinase activity
AMD21_RS13120	COG0784	Response regulator, receiver
AMD21_RS13130	COG0477	Major facilitator Superfamily
AMD21_RS13135	COG2902	Dehydrogenase
AMD21_RS13145	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD21_RS13150	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD21_RS13155	COG1609	Transcriptional regulator
AMD21_RS13160	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD21_RS13160	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMD21_RS13165	COG1105	Belongs to the carbohydrate kinase PfkB family
AMD21_RS13170	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD21_RS13170	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD21_RS13205	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AMD21_RS13215	COG1862	Preprotein translocase
AMD21_RS13220	COG0343	queuine tRNA-ribosyltransferase activity
AMD21_RS13225	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AMD21_RS13265	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AMD21_RS13270	COG3291	Pkd domain containing protein
AMD21_RS13280	COG0405	Gamma-glutamyltransferase
AMD21_RS13285	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AMD21_RS13300	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AMD21_RS13305	COG0742	ribosomal rna small subunit methyltransferase
AMD21_RS13310	COG0326	Molecular chaperone. Has ATPase activity
AMD21_RS13380	COG0531	amino acid
AMD21_RS13395	COG0006	proline dipeptidase activity
AMD21_RS13405	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMD21_RS13420	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD21_RS13425	COG3938	Belongs to the proline racemase family
AMD21_RS13435	COG0552	protein localization to endoplasmic reticulum
AMD21_RS13440	COG1194	a g-specific adenine glycosylase
AMD21_RS13445	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
AMD21_RS13450	COG0784	Response regulator, receiver
AMD21_RS13450	COG4191	Histidine kinase
AMD21_RS13465	COG0322	excinuclease ABC activity
AMD21_RS13480	COG3040	lipid binding
AMD21_RS13490	COG1960	acyl-CoA dehydrogenase activity
AMD21_RS13500	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AMD21_RS13520	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMD21_RS13525	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD21_RS13530	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD21_RS13555	COG0438	transferase activity, transferring glycosyl groups
AMD21_RS13565	COG0438	transferase activity, transferring glycosyl groups
AMD21_RS13570	COG0438	transferase activity, transferring glycosyl groups
AMD21_RS13620	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD21_RS13620	COG0072	phenylalanine-tRNA ligase activity
AMD21_RS13625	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AMD21_RS13640	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMD21_RS13645	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AMD21_RS13670	COG1082	Xylose isomerase domain protein TIM barrel
AMD21_RS13685	COG0366	Alpha amylase catalytic
AMD21_RS13690	COG2963	transposase activity
AMD21_RS13755	COG2948	multi-organism process
AMD21_RS13775	COG3505	Type IV secretory pathway VirD4
AMD21_RS13790	COG0556	nucleotide-excision repair
AMD21_RS13860	COG4695	Portal protein
AMD21_RS13905	COG3179	chitinase
AMD21_RS14000	COG3275	phosphorelay sensor kinase activity
AMD21_RS14005	COG1611	Belongs to the LOG family
AMD21_RS14015	COG2095	MarC family integral membrane protein
AMD21_RS14025	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMD21_RS14060	COG1185	polyribonucleotide nucleotidyltransferase activity
AMD21_RS14065	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AMD21_RS14070	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMD21_RS14075	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AMD21_RS14080	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AMD21_RS14085	COG0195	Participates in both transcription termination and antitermination
AMD21_RS14090	COG0779	Required for maturation of 30S ribosomal subunits
AMD21_RS14100	COG1007	ATP synthesis coupled electron transport
AMD21_RS14125	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD21_RS14130	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AMD21_RS14140	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AMD21_RS14145	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AMD21_RS14150	COG0649	NAD binding
AMD21_RS14155	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD21_RS14160	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD21_RS14165	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMD21_RS14180	COG0149	triose-phosphate isomerase activity
AMD21_RS14185	COG0300	oxidoreductase activity
AMD21_RS14220	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMD21_RS14225	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AMD21_RS14230	COG0159	tryptophan synthase activity
AMD21_RS14240	COG0133	tryptophan synthase activity
AMD21_RS14250	COG0135	phosphoribosylanthranilate isomerase activity
AMD21_RS14255	COG0101	tRNA pseudouridine synthase activity
AMD21_RS14275	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AMD21_RS14280	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMD21_RS14285	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AMD21_RS14290	COG2890	protein-(glutamine-N5) methyltransferase activity
AMD21_RS14300	COG0688	phosphatidylethanolamine metabolic process
AMD21_RS14310	COG0433	COG0433 Predicted ATPase
AMD21_RS14315	COG0494	nUDIX hydrolase
AMD21_RS14330	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMD21_RS14335	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMD21_RS14360	COG0717	Belongs to the dCTP deaminase family
AMD21_RS14365	COG0489	protein tyrosine kinase activity
AMD21_RS14385	COG3590	peptidase
AMD21_RS14390	COG3590	peptidase
AMD21_RS14410	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMD21_RS14415	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD21_RS14420	COG2311	Membrane
AMD21_RS14425	COG1047	Peptidyl-prolyl cis-trans
AMD21_RS14430	COG0791	NLP P60 protein
AMD21_RS14435	COG0791	NLP P60 protein
AMD21_RS14445	COG4106	trans-aconitate 2-methyltransferase activity
AMD21_RS14450	COG1301	dicarboxylic acid transport
AMD21_RS14455	COG1785	Belongs to the alkaline phosphatase family
AMD21_RS14460	COG0037	tRNA processing
AMD21_RS14465	COG1722	exodeoxyribonuclease VII activity
AMD21_RS14470	COG0142	geranyltranstransferase activity
AMD21_RS14475	COG4104	PAAR repeat-containing protein
AMD21_RS14485	COG0312	modulator of DNA gyrase
AMD21_RS14490	COG3028	Belongs to the UPF0307 family
AMD21_RS14495	COG0312	modulator of DNA gyrase
AMD21_RS14505	COG3164	Protein of unknown function
AMD21_RS14515	COG0424	maF-like protein
AMD21_RS14520	COG2968	Membrane
AMD21_RS14535	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AMD21_RS14550	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AMD21_RS14565	COG0495	leucyl-tRNA aminoacylation
AMD21_RS14575	COG3118	belongs to the thioredoxin family
AMD21_RS14600	COG2155	Conserved Protein
AMD21_RS14645	COG1132	(ABC) transporter
AMD21_RS14670	COG1538	Outer membrane efflux protein
AMD21_RS14675	COG0745	RESPONSE REGULATOR receiver
AMD21_RS14680	COG5000	phosphorelay sensor kinase activity
AMD21_RS14680	COG5002	protein histidine kinase activity
AMD21_RS14685	COG0475	glutathione-regulated potassium exporter activity
AMD21_RS14695	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMD21_RS14720	COG1187	pseudouridine synthase activity
AMD21_RS14725	COG5001	Diguanylate cyclase
AMD21_RS14725	COG5002	protein histidine kinase activity
AMD21_RS14840	COG0667	Aldo Keto reductase
AMD21_RS14845	COG2814	Major facilitator Superfamily
AMD21_RS14850	COG0583	DNA-binding transcription factor activity
AMD21_RS14860	COG2207	Transcriptional regulator
AMD21_RS14870	COG1309	transcriptional regulator
AMD21_RS14895	COG0735	belongs to the Fur family
AMD21_RS14900	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMD21_RS14925	COG4452	Inner membrane protein CreD
AMD21_RS14935	COG2205	protein histidine kinase activity
AMD21_RS14940	COG0745	RESPONSE REGULATOR receiver
AMD21_RS14945	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AMD21_RS14955	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMD21_RS14990	COG2198	Histidine kinase
AMD21_RS14990	COG0643	Histidine kinase
AMD21_RS14995	COG0840	transmembrane signaling receptor activity
AMD21_RS15000	COG0835	chemotaxis
AMD21_RS15005	COG2202	Pas domain
AMD21_RS15005	COG2199	diguanylate cyclase activity
AMD21_RS15005	COG2200	EAL domain
AMD21_RS15010	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMD21_RS15015	COG2201	protein-glutamate methylesterase activity
AMD21_RS15020	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD21_RS15025	COG3590	peptidase
AMD21_RS15035	COG0588	phosphoglycerate mutase activity
AMD21_RS15040	COG1515	deoxyribonuclease V activity
AMD21_RS15050	COG1741	Belongs to the pirin family
AMD21_RS15065	COG1741	Belongs to the pirin family
AMD21_RS15070	COG1966	Carbon starvation protein
AMD21_RS15075	COG2879	small protein
AMD21_RS15130	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AMD21_RS15135	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AMD21_RS15140	COG2080	2 iron, 2 sulfur cluster binding
AMD21_RS15150	COG2203	Gaf domain
AMD21_RS15150	COG3706	GGDEF domain
AMD21_RS15150	COG5001	Diguanylate cyclase
AMD21_RS15150	COG4251	negative regulation of phosphorylation
AMD21_RS15155	COG0629	single-stranded DNA binding
AMD21_RS15160	COG0142	geranyltranstransferase activity
AMD21_RS15170	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AMD21_RS15185	COG0527	aspartate kinase activity
AMD21_RS15190	COG0384	phenazine biosynthesis protein PhzF
AMD21_RS15195	COG0384	phenazine biosynthesis protein PhzF
AMD21_RS15205	COG1764	response to oxidative stress
AMD21_RS15210	COG0540	Belongs to the ATCase OTCase family
AMD21_RS15215	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AMD21_RS15220	COG1678	Uncharacterized ACR, COG1678
AMD21_RS15230	COG0519	Catalyzes the synthesis of GMP from XMP
AMD21_RS15240	COG5297	Belongs to the glycosyl hydrolase family 6
AMD21_RS15255	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
AMD21_RS15270	COG0739	heme binding
AMD21_RS15290	COG0693	protein deglycase activity
AMD21_RS15300	COG1959	2 iron, 2 sulfur cluster binding
AMD21_RS15305	COG0719	Fe-S assembly protein
AMD21_RS15310	COG0396	ATPase activity
AMD21_RS15315	COG0719	Fe-S assembly protein
AMD21_RS15320	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AMD21_RS15330	COG2146	nitrite reductase [NAD(P)H] activity
AMD21_RS15335	COG4774	siderophore transport
AMD21_RS15340	COG3128	pkhd-type hydroxylase
AMD21_RS15365	COG1477	protein flavinylation
AMD21_RS15370	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMD21_RS15385	COG1555	photosystem II stabilization
AMD21_RS15390	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD21_RS15400	COG3178	'Phosphotransferase
AMD21_RS15405	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMD21_RS15415	COG0628	permease
AMD21_RS15425	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AMD21_RS15435	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMD21_RS15455	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AMD21_RS15460	COG0271	Belongs to the BolA IbaG family
AMD21_RS15470	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AMD21_RS15480	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AMD21_RS15485	COG1137	ATPase activity
AMD21_RS15500	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD21_RS15505	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
AMD21_RS15510	COG1660	Displays ATPase and GTPase activities
AMD21_RS15520	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD21_RS15525	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMD21_RS15530	COG2239	Acts as a magnesium transporter
AMD21_RS15540	COG1294	oxidase, subunit
AMD21_RS15545	COG1271	oxidase subunit
AMD21_RS15555	COG1113	amino acid transport
AMD21_RS15575	COG2197	response regulator
AMD21_RS15580	COG0531	amino acid
AMD21_RS15600	COG1234	tRNA 3'-trailer cleavage
AMD21_RS15635	COG2814	Major facilitator Superfamily
AMD21_RS15645	COG0754	glutathionylspermidine amidase activity
AMD21_RS15670	COG1842	Phage shock protein A
AMD21_RS15680	COG0259	pyridoxamine-phosphate oxidase activity
AMD21_RS15685	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AMD21_RS15690	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AMD21_RS15700	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AMD21_RS15775	COG2814	Major facilitator Superfamily
AMD21_RS15795	COG2198	Histidine kinase
AMD21_RS15795	COG2205	protein histidine kinase activity
AMD21_RS15795	COG0784	Response regulator, receiver
AMD21_RS15800	COG2353	YceI-like domain
AMD21_RS15820	COG1760	l-serine dehydratase
AMD21_RS15830	COG0460	homoserine dehydrogenase
AMD21_RS15830	COG0527	aspartate kinase activity
AMD21_RS15835	COG0626	cystathionine gamma-synthase activity
AMD21_RS15840	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMD21_RS15845	COG0739	heme binding
AMD21_RS15850	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AMD21_RS15855	COG1272	protein, Hemolysin III
AMD21_RS15860	COG2982	Protein involved in outer membrane biogenesis
AMD21_RS15865	COG0517	IMP dehydrogenase activity
AMD21_RS15865	COG0516	GMP reductase activity
AMD21_RS15870	COG0463	Glycosyl transferase, family 2
AMD21_RS15875	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMD21_RS15880	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AMD21_RS15890	COG4771	TonB-dependent receptor
AMD21_RS15900	COG1309	transcriptional regulator
AMD21_RS15910	COG1960	acyl-CoA dehydrogenase activity
AMD21_RS15935	COG0509	glycine decarboxylation via glycine cleavage system
AMD21_RS15940	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMD21_RS15950	COG0330	HflC and HflK could
AMD21_RS15955	COG1742	UPF0060 membrane protein
AMD21_RS15960	COG3956	TIGRFAM MazG family protein
AMD21_RS15970	COG0494	nUDIX hydrolase
AMD21_RS15980	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMD21_RS15985	COG0837	glucose binding
AMD21_RS16000	COG1388	LysM domain
AMD21_RS16000	COG3858	chitin binding
AMD21_RS16005	COG3525	Glycosyl hydrolase, family 20, catalytic domain
AMD21_RS16015	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD21_RS16030	COG0531	amino acid
AMD21_RS16040	COG1486	melibiose metabolic process
AMD21_RS16050	COG3537	Alpha-1,2-mannosidase
AMD21_RS16085	COG3142	Participates in the control of copper homeostasis
AMD21_RS16090	COG1446	asparaginase
AMD21_RS16115	COG0643	Histidine kinase
AMD21_RS16115	COG0784	Response regulator, receiver
AMD21_RS16115	COG2198	Histidine kinase
AMD21_RS16120	COG0840	transmembrane signaling receptor activity
AMD21_RS16125	COG0835	chemotaxis
AMD21_RS16140	COG0189	ligase activity
AMD21_RS16150	COG1397	ADP-ribosylglycohydrolase
AMD21_RS16160	COG1199	ATP-dependent helicase activity
AMD21_RS16170	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMD21_RS16175	COG1215	transferase activity, transferring glycosyl groups
AMD21_RS16185	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMD21_RS16190	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AMD21_RS16195	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
AMD21_RS16200	COG0535	radical SAM domain protein
AMD21_RS16205	COG0535	radical SAM domain protein
AMD21_RS16220	COG0837	glucose binding
AMD21_RS16230	COG1643	Atp-dependent helicase
AMD21_RS16235	COG0783	Belongs to the Dps family
AMD21_RS16240	COG0514	ATP-dependent DNA helicase (RecQ)
AMD21_RS16275	COG0840	transmembrane signaling receptor activity
AMD21_RS16295	COG3920	Histidine kinase
AMD21_RS16300	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AMD21_RS16310	COG0602	queuosine metabolic process
AMD21_RS16320	COG2885	chlorophyll binding
AMD21_RS16325	COG0823	Involved in the tonB-independent uptake of proteins
AMD21_RS16335	COG0848	biopolymer transport protein
AMD21_RS16345	COG0824	Thioesterase
AMD21_RS16350	COG2255	four-way junction helicase activity
AMD21_RS16360	COG3158	transport of potassium into the cell
AMD21_RS16365	COG0632	four-way junction helicase activity
AMD21_RS16370	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AMD21_RS16375	COG0217	transcriptional regulatory protein
AMD21_RS16390	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AMD21_RS16405	COG0477	Major facilitator Superfamily
AMD21_RS16440	COG0488	(ABC) transporter
AMD21_RS16475	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMD21_RS16475	COG4651	solute:proton antiporter activity
AMD21_RS16500	COG4772	TonB-dependent receptor
AMD21_RS16510	COG4264	IucA IucC family
AMD21_RS16525	COG0019	diaminopimelate decarboxylase activity
AMD21_RS16550	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AMD21_RS16560	COG1492	cobalamin metabolic process
AMD21_RS16570	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AMD21_RS16590	COG4206	TonB-dependent receptor
AMD21_RS16595	COG0542	response to heat
AMD21_RS16600	COG1116	anion transmembrane transporter activity
AMD21_RS16605	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMD21_RS16610	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMD21_RS16615	COG0667	Aldo Keto reductase
AMD21_RS16620	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMD21_RS16625	COG4771	TonB-dependent receptor
AMD21_RS16630	COG2827	Endonuclease containing a URI domain
AMD21_RS16670	COG1877	trehalose-phosphatase activity
AMD21_RS16675	COG3387	PFAM Glycoside hydrolase 15-related
AMD21_RS16690	COG0840	transmembrane signaling receptor activity
AMD21_RS16695	COG3011	Protein conserved in bacteria
AMD21_RS16710	COG0564	pseudouridine synthase activity
AMD21_RS16715	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD21_RS16725	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMD21_RS16725	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AMD21_RS16755	COG2951	lytic endotransglycosylase activity
AMD21_RS16760	COG4644	lycopene metabolic process
AMD21_RS16780	COG2369	cell adhesion
AMD21_RS16805	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AMD21_RS16810	COG0045	succinate-CoA ligase (ADP-forming) activity
AMD21_RS16825	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD21_RS16855	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AMD21_RS16860	COG0237	dephospho-CoA kinase activity
AMD21_RS16880	COG2801	Transposase and inactivated derivatives
AMD21_RS16885	COG5002	protein histidine kinase activity
AMD21_RS16890	COG0745	RESPONSE REGULATOR receiver
AMD21_RS16900	COG0189	ligase activity
AMD21_RS16960	COG2003	Belongs to the UPF0758 family
AMD21_RS16985	COG0784	Response regulator, receiver
AMD21_RS16985	COG4191	Histidine kinase
AMD21_RS16990	COG0784	Response regulator, receiver
AMD21_RS16990	COG4191	Histidine kinase
AMD21_RS17100	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AMD21_RS17125	COG2022	thiamine diphosphate biosynthetic process
AMD21_RS17130	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AMD21_RS17135	COG3273	potassium ion transport
AMD21_RS17135	COG0471	metal ion transport
AMD21_RS17155	COG1970	mechanosensitive ion channel activity
AMD21_RS17180	COG3250	beta-galactosidase activity
AMD21_RS17185	COG4948	Mandelate Racemase Muconate Lactonizing
AMD21_RS17200	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMD21_RS17210	COG0308	aminopeptidase N
AMD21_RS17260	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD21_RS17270	COG0529	Catalyzes the synthesis of activated sulfate
AMD21_RS17270	COG2895	sulfate adenylyltransferase (ATP) activity
AMD21_RS17275	COG0175	sulfate reduction
AMD21_RS17280	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AMD21_RS17285	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMD21_RS17290	COG0175	sulfate reduction
AMD21_RS17310	COG0784	Response regulator, receiver
AMD21_RS17310	COG2198	Histidine kinase
AMD21_RS17310	COG2205	protein histidine kinase activity
AMD21_RS17345	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
AMD21_RS17350	COG3588	fructose-bisphosphate aldolase
AMD21_RS17355	COG0469	pyruvate kinase activity
AMD21_RS17365	COG0126	phosphoglycerate kinase activity
AMD21_RS17385	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AMD21_RS17395	COG3047	cAMP biosynthetic process
AMD21_RS17400	COG3047	cAMP biosynthetic process
AMD21_RS17410	COG3453	Protein conserved in bacteria
AMD21_RS17410	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD21_RS17415	COG0725	ABC transporter, periplasmic molybdate-binding protein
AMD21_RS17420	COG4149	molybdate abc transporter
AMD21_RS17425	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AMD21_RS17460	COG1376	ErfK ybiS ycfS ynhG family protein
AMD21_RS17465	COG0739	heme binding
AMD21_RS17475	COG4773	Receptor
AMD21_RS17490	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AMD21_RS17495	COG1301	dicarboxylic acid transport
AMD21_RS17505	COG2304	oxidoreductase activity
AMD21_RS17525	COG0714	Associated with various cellular activities
AMD21_RS17555	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AMD21_RS17580	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMD21_RS17590	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMD21_RS17600	COG0194	GDP metabolic process
AMD21_RS17605	COG1561	YicC-like family, N-terminal region
AMD21_RS17610	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AMD21_RS17620	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AMD21_RS17625	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMD21_RS17640	COG0006	proline dipeptidase activity
AMD21_RS17650	COG0006	proline dipeptidase activity
AMD21_RS17655	COG3079	Belongs to the UPF0149 family
AMD21_RS17670	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMD21_RS17680	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AMD21_RS17690	COG2912	Transglutaminase-like superfamily
AMD21_RS17695	COG1773	rubredoxin
AMD21_RS17700	COG0352	thiamine-phosphate diphosphorylase activity
AMD21_RS17715	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AMD21_RS17730	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMD21_RS17760	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMD21_RS17765	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD21_RS17770	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS17780	COG0671	phosphoesterase, PA-phosphatase related
AMD21_RS17785	COG3781	membrane
AMD21_RS17795	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMD21_RS17800	COG0563	adenylate kinase activity
AMD21_RS17815	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
AMD21_RS17825	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMD21_RS17845	COG3710	Transcriptional regulator
AMD21_RS17850	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AMD21_RS17860	COG0840	transmembrane signaling receptor activity
AMD21_RS17865	COG0405	Gamma-glutamyltransferase
AMD21_RS17870	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AMD21_RS17890	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMD21_RS17895	COG0473	3-isopropylmalate dehydrogenase activity
AMD21_RS17900	COG0066	3-isopropylmalate dehydratase activity
AMD21_RS17905	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AMD21_RS17925	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMD21_RS17930	COG1538	Outer membrane efflux protein
AMD21_RS17935	COG1519	Transferase
AMD21_RS17940	COG1560	Kdo2-lipid A biosynthetic process
AMD21_RS17965	COG0281	malic enzyme
AMD21_RS17965	COG0280	phosphate acetyltransferase
AMD21_RS17970	COG1301	dicarboxylic acid transport
AMD21_RS17995	COG0583	DNA-binding transcription factor activity
AMD21_RS18000	COG0667	Aldo Keto reductase
AMD21_RS18015	COG2197	response regulator
AMD21_RS18025	COG0642	Histidine kinase
AMD21_RS18040	COG2851	Citrate transporter
AMD21_RS18045	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS18050	COG1609	Transcriptional regulator
AMD21_RS18055	COG2211	Major facilitator Superfamily
AMD21_RS18080	COG1162	GTPase activity
AMD21_RS18100	COG4773	Receptor
AMD21_RS18105	COG0726	polysaccharide deacetylase
AMD21_RS18110	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMD21_RS18125	COG2963	transposase activity
AMD21_RS18130	COG2801	Transposase and inactivated derivatives
AMD21_RS18145	COG1307	EDD domain protein, DegV family
AMD21_RS18150	COG0242	peptide deformylase activity
AMD21_RS18170	COG0457	Tetratricopeptide repeat
AMD21_RS18175	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AMD21_RS18180	COG1215	transferase activity, transferring glycosyl groups
AMD21_RS18185	COG1215	transferase activity, transferring glycosyl groups
AMD21_RS18200	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AMD21_RS18255	COG2188	Transcriptional regulator
AMD21_RS18265	COG1450	Type ii and iii secretion system protein
AMD21_RS18280	COG3166	PFAM Fimbrial assembly family protein
AMD21_RS18285	COG3156	type II secretion system protein K
AMD21_RS18290	COG4795	General secretion pathway protein
AMD21_RS18295	COG2165	general secretion pathway protein
AMD21_RS18300	COG4970	Tfp pilus assembly protein FimT
AMD21_RS18305	COG2165	general secretion pathway protein
AMD21_RS18310	COG1459	type II secretion system
AMD21_RS18315	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD21_RS18320	COG1404	Belongs to the peptidase S8 family
AMD21_RS18325	COG5295	Hep Hag repeat protein
AMD21_RS18330	COG1404	Belongs to the peptidase S8 family
AMD21_RS18335	COG5295	Hep Hag repeat protein
AMD21_RS18345	COG0047	phosphoribosylformylglycinamidine synthase activity
AMD21_RS18345	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMD21_RS18350	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMD21_RS18355	COG4974	Belongs to the 'phage' integrase family
AMD21_RS18370	COG0795	lipopolysaccharide-transporting ATPase activity
AMD21_RS18380	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMD21_RS18395	COG0525	valine-tRNA ligase activity
AMD21_RS18425	COG1183	phosphatidylcholine synthase activity
AMD21_RS18435	COG0442	prolyl-tRNA aminoacylation
AMD21_RS18450	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMD21_RS18455	COG1127	ABC transporter
AMD21_RS18460	COG3218	ABC-type transport auxiliary lipoprotein component
AMD21_RS18460	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMD21_RS18495	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMD21_RS18500	COG0662	Cupin 2, conserved barrel domain protein
AMD21_RS18500	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
AMD21_RS18530	COG2086	electron transfer activity
AMD21_RS18545	COG0546	phosphoglycolate phosphatase activity
AMD21_RS18545	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMD21_RS18550	COG0277	FAD linked oxidase domain protein
AMD21_RS18565	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AMD21_RS18595	COG0438	transferase activity, transferring glycosyl groups
AMD21_RS18595	COG1216	Glycosyl transferase, family 2
AMD21_RS18615	COG0626	cystathionine gamma-synthase activity
AMD21_RS18650	COG0625	glutathione transferase activity
AMD21_RS18660	COG0513	Belongs to the DEAD box helicase family
AMD21_RS18670	COG4206	TonB-dependent receptor
AMD21_RS18675	COG0720	synthase
AMD21_RS18685	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AMD21_RS18695	COG1956	GAF domain-containing protein
AMD21_RS18705	COG2819	hydrolase of the alpha beta superfamily
AMD21_RS18720	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMD21_RS18725	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD21_RS18740	COG0339	signal peptide processing
AMD21_RS18790	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMD21_RS18795	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD21_RS18800	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMD21_RS18800	COG1136	(ABC) transporter
AMD21_RS18805	COG1136	(ABC) transporter
AMD21_RS18805	COG0577	efflux transmembrane transporter activity
AMD21_RS18810	COG0577	efflux transmembrane transporter activity
AMD21_RS18825	COG4191	Histidine kinase
AMD21_RS18830	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AMD21_RS18845	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AMD21_RS18850	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AMD21_RS18855	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AMD21_RS18860	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AMD21_RS18865	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AMD21_RS18870	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AMD21_RS18880	COG0356	it plays a direct role in the translocation of protons across the membrane
AMD21_RS18900	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMD21_RS18910	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMD21_RS18955	COG2011	ABC-type metal ion transport system permease component
AMD21_RS18960	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AMD21_RS18965	COG0697	spore germination
AMD21_RS18970	COG1666	GTP binding
AMD21_RS18980	COG5002	protein histidine kinase activity
AMD21_RS18980	COG2198	Histidine kinase
AMD21_RS18980	COG0784	Response regulator, receiver
AMD21_RS19005	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMD21_RS19010	COG1187	pseudouridine synthase activity
AMD21_RS19015	COG2813	Specifically methylates the guanine in position
AMD21_RS19035	COG2202	Pas domain
AMD21_RS19035	COG2205	protein histidine kinase activity
AMD21_RS19055	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AMD21_RS19060	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD21_RS19115	COG0842	Transport permease protein
AMD21_RS19120	COG1131	(ABC) transporter
AMD21_RS19125	COG0025	NhaP-type Na H and K H
AMD21_RS19130	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
AMD21_RS19135	COG1573	uracil-dna glycosylase
AMD21_RS19145	COG3384	dioxygenase
AMD21_RS19155	COG0583	DNA-binding transcription factor activity
AMD21_RS19165	COG0667	Aldo Keto reductase
AMD21_RS19175	COG3590	peptidase
AMD21_RS19195	COG0531	amino acid
AMD21_RS19210	COG2972	Histidine kinase
AMD21_RS19225	COG3685	Protein conserved in bacteria
AMD21_RS19230	COG3546	catalase activity
AMD21_RS19275	COG1271	oxidase subunit
AMD21_RS19280	COG1294	oxidase, subunit
AMD21_RS19295	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS19300	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMD21_RS19320	COG1132	(ABC) transporter
AMD21_RS19335	COG1063	alcohol dehydrogenase
AMD21_RS19410	COG0251	oxidation-reduction process
AMD21_RS19440	COG0840	transmembrane signaling receptor activity
AMD21_RS19460	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AMD21_RS19500	COG0024	Methionine aminopeptidase
AMD21_RS19520	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMD21_RS19525	COG1490	D-aminoacyl-tRNA deacylase activity
AMD21_RS19530	COG1560	Kdo2-lipid A biosynthetic process
AMD21_RS19580	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMD21_RS19580	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMD21_RS19585	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AMD21_RS19590	COG0242	peptide deformylase activity
AMD21_RS19595	COG1652	LysM domain
AMD21_RS19600	COG0758	DNA mediated transformation
AMD21_RS19605	COG2922	Belongs to the Smg family
AMD21_RS19620	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMD21_RS19620	COG1754	DNA topoisomerase type I activity
AMD21_RS19625	COG0009	L-threonylcarbamoyladenylate synthase
AMD21_RS19640	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS19650	COG0616	signal peptide processing
AMD21_RS19655	COG0534	Mate efflux family protein
AMD21_RS19675	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AMD21_RS19680	COG0625	glutathione transferase activity
AMD21_RS19695	COG1252	NADH dehydrogenase
AMD21_RS19700	COG2860	membrane
AMD21_RS19705	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMD21_RS19710	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMD21_RS19715	COG2201	protein-glutamate methylesterase activity
AMD21_RS19720	COG2177	Part of the ABC transporter FtsEX involved in
AMD21_RS19725	COG2884	Cell division ATP-binding protein ftsE
AMD21_RS19730	COG0513	Belongs to the DEAD box helicase family
AMD21_RS19735	COG3118	belongs to the thioredoxin family
AMD21_RS19740	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMD21_RS19745	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
AMD21_RS19750	COG0583	DNA-binding transcription factor activity
AMD21_RS19795	COG1518	maintenance of DNA repeat elements
AMD21_RS19800	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
AMD21_RS19810	COG1652	LysM domain
AMD21_RS19815	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AMD21_RS19815	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AMD21_RS19820	COG1473	amidohydrolase
AMD21_RS19825	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD21_RS19830	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMD21_RS19840	COG5383	Protein conserved in bacteria
AMD21_RS19880	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
AMD21_RS19885	COG3023	N-Acetylmuramoyl-L-alanine amidase
AMD21_RS19895	COG4948	Mandelate Racemase Muconate Lactonizing
AMD21_RS19905	COG0531	amino acid
AMD21_RS19920	COG4682	membrane
AMD21_RS19925	COG2133	pyrroloquinoline quinone binding
AMD21_RS19935	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AMD21_RS19940	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AMD21_RS19950	COG1610	YqeY-like protein
AMD21_RS19955	COG1295	ribonuclease BN
AMD21_RS19960	COG0358	DNA primase activity
AMD21_RS19975	COG0109	protoheme IX farnesyltransferase activity
AMD21_RS20005	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AMD21_RS20015	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMD21_RS20060	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AMD21_RS20065	COG0739	heme binding
AMD21_RS20070	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AMD21_RS20080	COG2223	nitrite transmembrane transporter activity
AMD21_RS20085	COG0708	Exodeoxyribonuclease III
AMD21_RS20090	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AMD21_RS20100	COG1192	Involved in chromosome partitioning
AMD21_RS20105	COG1475	DNA binding
AMD21_RS20120	COG0463	Glycosyl transferase, family 2
AMD21_RS20140	COG0756	dUTP diphosphatase activity
AMD21_RS20145	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMD21_RS20150	COG2003	Belongs to the UPF0758 family
AMD21_RS20155	COG0018	arginyl-trna synthetase
AMD21_RS20170	COG4221	oxidoreductase activity
AMD21_RS20175	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMD21_RS20175	COG2755	lipolytic protein G-D-S-L family
AMD21_RS20185	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AMD21_RS20195	COG1166	arginine decarboxylase activity
AMD21_RS20200	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AMD21_RS20240	COG0606	chelatase, subunit chli
AMD21_RS20255	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AMD21_RS20290	COG1690	Belongs to the RtcB family
AMD21_RS20330	COG1090	epimerase
AMD21_RS20340	COG0642	Histidine kinase
AMD21_RS20360	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMD21_RS20385	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMD21_RS20390	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AMD21_RS20405	COG0753	catalase activity
AMD21_RS20420	COG2197	response regulator
AMD21_RS20425	COG4585	Histidine kinase
AMD21_RS20430	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD21_RS20435	COG1136	(ABC) transporter
AMD21_RS20460	COG0697	spore germination
AMD21_RS20475	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMD21_RS20480	COG0180	Tryptophanyl-tRNA synthetase
AMD21_RS20485	COG3237	CsbD-like
AMD21_RS20525	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AMD21_RS20540	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AMD21_RS20585	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMD21_RS20605	COG1199	ATP-dependent helicase activity
AMD21_RS20620	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AMD21_RS20680	COG0625	glutathione transferase activity
AMD21_RS20720	COG4555	ABC transporter
AMD21_RS20730	COG1476	TRANSCRIPTIONal
AMD21_RS20775	COG0543	2 iron, 2 sulfur cluster binding
AMD21_RS20775	COG0633	Ferredoxin
AMD21_RS20780	COG1131	(ABC) transporter
AMD21_RS20785	COG0842	Transport permease protein
AMD21_RS20795	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMD21_RS20825	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMD21_RS20830	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMD21_RS20840	COG0045	succinate-CoA ligase (ADP-forming) activity
AMD21_RS20840	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AMD21_RS20840	COG1042	CoA-binding domain protein
AMD21_RS20845	COG2239	Acts as a magnesium transporter
AMD21_RS20850	COG3338	carbonate dehydratase activity
AMD21_RS20860	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AMD21_RS20865	COG3387	PFAM Glycoside hydrolase 15-related
AMD21_RS20880	COG3100	YcgL domain-containing protein
AMD21_RS20885	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMD21_RS20895	COG0463	Glycosyl transferase, family 2
AMD21_RS20910	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS20950	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD21_RS20965	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMD21_RS20990	COG4946	Tricorn protease homolog
AMD21_RS20990	COG1506	peptidase
AMD21_RS20990	COG0823	Involved in the tonB-independent uptake of proteins
AMD21_RS21005	COG0408	coproporphyrinogen oxidase activity
AMD21_RS21040	COG2815	serine threonine protein kinase
AMD21_RS21040	COG0515	serine threonine protein kinase
AMD21_RS21045	COG0631	protein serine/threonine phosphatase activity
AMD21_RS21205	COG0210	DNA helicase
AMD21_RS21220	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD21_RS21225	COG0583	DNA-binding transcription factor activity
AMD21_RS21230	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMD21_RS21240	COG2159	amidohydrolase
AMD21_RS21260	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD21_RS21280	COG0357	Ribosomal RNA small subunit methyltransferase G
AMD21_RS21285	COG3540	Alkaline phosphatase
AMD21_RS21295	COG2091	lysine biosynthetic process via aminoadipic acid
AMD21_RS21315	COG0708	Exodeoxyribonuclease III
AMD21_RS21320	COG1940	carbohydrate kinase activity
AMD21_RS21320	COG1846	Transcriptional regulator
AMD21_RS21330	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMD21_RS21340	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMD21_RS21345	COG3162	membrane
AMD21_RS21355	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMD21_RS21385	COG3507	Belongs to the glycosyl hydrolase 43 family
AMD21_RS21405	COG1028	Short-chain dehydrogenase reductase Sdr
AMD21_RS21410	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMD21_RS21415	COG4948	Mandelate Racemase Muconate Lactonizing
AMD21_RS21425	COG3254	rhamnose metabolic process
AMD21_RS21430	COG0738	Major facilitator superfamily
AMD21_RS21435	COG1414	Transcriptional regulator
AMD21_RS21440	COG1971	Probably functions as a manganese efflux pump
AMD21_RS21445	COG2205	protein histidine kinase activity
AMD21_RS21460	COG3459	Glycosyltransferase 36 associated
AMD21_RS21465	COG2211	Major facilitator Superfamily
AMD21_RS21470	COG3265	gluconokinase activity
AMD21_RS21475	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMD21_RS21495	COG2911	Protein conserved in bacteria
AMD21_RS21500	COG0729	surface antigen
AMD21_RS21540	COG0752	glycyl-tRNA synthetase alpha subunit
AMD21_RS21545	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD21_RS21555	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMD21_RS21555	COG0519	Catalyzes the synthesis of GMP from XMP
AMD21_RS21565	COG0805	protein transport
AMD21_RS21570	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMD21_RS21575	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMD21_RS21585	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AMD21_RS21605	COG2974	May be involved in recombination
AMD21_RS21610	COG0037	tRNA processing
AMD21_RS21615	COG2115	Belongs to the xylose isomerase family
AMD21_RS21625	COG3661	Belongs to the glycosyl hydrolase 67 family
AMD21_RS21635	COG4948	Mandelate Racemase Muconate Lactonizing
AMD21_RS21645	COG1472	Belongs to the glycosyl hydrolase 3 family
AMD21_RS21650	COG0246	Mannitol dehydrogenase
AMD21_RS21725	COG3386	PFAM SMP-30 Gluconolaconase
AMD21_RS21735	COG3250	beta-galactosidase activity
AMD21_RS21740	COG1904	glucuronate isomerase
AMD21_RS21745	COG3693	PFAM glycoside hydrolase, family 10
AMD21_RS21760	COG3693	PFAM glycoside hydrolase, family 10
AMD21_RS21775	COG2211	Major facilitator Superfamily
AMD21_RS21820	COG2937	Belongs to the GPAT DAPAT family
AMD21_RS21855	COG0284	orotidine-5'-phosphate decarboxylase activity
AMD21_RS21860	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
AMD21_RS21865	COG3132	Protein of unknown function, DUF480
AMD21_RS21880	COG0210	DNA helicase
AMD21_RS21885	COG1435	thymidine kinase activity
AMD21_RS21895	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
AMD21_RS21905	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AMD21_RS21940	COG3135	benzoate transporter
AMD21_RS21960	COG0676	glucose-6-phosphate 1-epimerase activity
AMD21_RS21970	COG3012	SEC-C Motif Domain Protein
AMD21_RS21975	COG0730	response to heat
AMD21_RS21995	COG0302	gtp cyclohydrolase
AMD21_RS22010	COG1566	PFAM secretion protein HlyD family protein
AMD21_RS22020	COG1289	transmembrane transporter activity
AMD21_RS22025	COG0477	Major facilitator Superfamily
AMD21_RS22035	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD21_RS22055	COG4691	Plasmid stability protein
AMD21_RS22060	COG1487	ribonuclease activity
AMD21_RS22085	COG0564	pseudouridine synthase activity
AMD21_RS22120	COG0439	Biotin carboxylase
AMD21_RS22160	COG1074	ATP-dependent DNA helicase activity
AMD21_RS22165	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AMD21_RS22180	COG1127	ABC transporter
AMD21_RS22185	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMD21_RS22190	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMD21_RS22205	COG2853	Lipoprotein
AMD21_RS22215	COG0386	Belongs to the glutathione peroxidase family
AMD21_RS22225	COG1322	Protein conserved in bacteria
AMD21_RS22230	COG0604	alcohol dehydrogenase
AMD21_RS22245	COG0625	glutathione transferase activity
AMD21_RS22255	COG0531	amino acid
AMD21_RS22260	COG3537	Alpha-1,2-mannosidase
AMD21_RS22270	COG3706	GGDEF domain
AMD21_RS22275	COG3835	regulator
AMD21_RS22280	COG1929	Belongs to the glycerate kinase type-1 family
AMD21_RS22285	COG2271	Major facilitator Superfamily
AMD21_RS22300	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMD21_RS22305	COG0861	Integral membrane protein TerC family
AMD21_RS22315	COG0584	glycerophosphoryl diester phosphodiesterase
AMD21_RS22330	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AMD21_RS22335	COG0726	polysaccharide deacetylase
AMD21_RS22345	COG0706	membrane insertase activity
AMD21_RS22350	COG0594	ribonuclease P activity