APY29_RS00295	PWY-6655	xanthan biosynthesis
APY29_RS00295	PWY-6658	acetan biosynthesis
APY29_RS00310	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APY29_RS00310	PWY-622	starch biosynthesis
APY29_RS00565	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_RS00565	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_RS00565	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_RS00565	PWY-6113	superpathway of mycolate biosynthesis
APY29_RS00565	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_RS00565	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_RS00565	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_RS00565	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_RS00565	PWY-7858	APY29_RS00565
APY29_RS00565	PWYG-321	mycolate biosynthesis
APY29_RS00680	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_RS00680	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APY29_RS00680	PWY-6638	sulfolactate degradation III
APY29_RS00680	PWY-6642	(<i>R</i>)-cysteate degradation
APY29_RS00680	PWY-6643	coenzyme M biosynthesis II
APY29_RS00680	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_RS00680	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_RS00680	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_RS00685	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS00815	PWY-2622	trehalose biosynthesis IV
APY29_RS00820	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APY29_RS00820	PWY-622	starch biosynthesis
APY29_RS01050	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_RS01050	PWY-6416	quinate degradation II
APY29_RS01050	PWY-6707	gallate biosynthesis
APY29_RS01070	PWY-5530	sorbitol biosynthesis II
APY29_RS01125	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS01125	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_RS01125	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_RS01125	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS01125	PWY-5723	Rubisco shunt
APY29_RS01125	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS01125	PWY-6886	1-butanol autotrophic biosynthesis
APY29_RS01125	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS01125	PWY-7003	glycerol degradation to butanol
APY29_RS01125	PWY-7124	ethylene biosynthesis V (engineered)
APY29_RS01125	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APY29_RS01190	PWY-5132	humulone biosynthesis
APY29_RS01190	PWY-5133	cohumulone biosynthesis
APY29_RS01190	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APY29_RS01190	PWY-7118	chitin degradation to ethanol
APY29_RS01190	PWY-7857	APY29_RS01190
APY29_RS01235	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_RS01245	PWY-6012	acyl carrier protein metabolism I
APY29_RS01245	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APY29_RS01320	PWY-7701	APY29_RS01320
APY29_RS01570	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APY29_RS01630	PWY-5667	CDP-diacylglycerol biosynthesis I
APY29_RS01630	PWY-5981	CDP-diacylglycerol biosynthesis III
APY29_RS01630	PWY-6453	stigma estolide biosynthesis
APY29_RS01630	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APY29_RS01630	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
APY29_RS01630	PWY-7587	oleate biosynthesis III (cyanobacteria)
APY29_RS01630	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
APY29_RS01630	PWY-7782	APY29_RS01630
APY29_RS01635	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_RS01635	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_RS01635	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_RS01635	PWY-5994	palmitate biosynthesis I (animals and fungi)
APY29_RS01635	PWY-6113	superpathway of mycolate biosynthesis
APY29_RS01635	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_RS01635	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_RS01635	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_RS01635	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_RS01635	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_RS01635	PWY-7858	APY29_RS01635
APY29_RS01635	PWYG-321	mycolate biosynthesis
APY29_RS01725	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APY29_RS01735	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_RS01735	PWY-5743	3-hydroxypropanoate cycle
APY29_RS01735	PWY-5744	glyoxylate assimilation
APY29_RS01735	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_RS01735	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS01735	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_RS01735	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_RS01750	PWY-5392	reductive TCA cycle II
APY29_RS01750	PWY-5537	pyruvate fermentation to acetate V
APY29_RS01750	PWY-5538	pyruvate fermentation to acetate VI
APY29_RS01750	PWY-5690	TCA cycle II (plants and fungi)
APY29_RS01750	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_RS01750	PWY-6728	methylaspartate cycle
APY29_RS01750	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS01750	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_RS01770	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APY29_RS01770	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_RS01770	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_RS01770	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_RS01770	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS01770	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS01770	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_RS01770	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APY29_RS01780	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APY29_RS01780	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_RS01780	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_RS01780	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_RS01780	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS01780	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS01780	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_RS01780	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APY29_RS01815	PWY-6654	phosphopantothenate biosynthesis III
APY29_RS01815	PWY-7862	APY29_RS01815
APY29_RS01970	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_RS01970	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APY29_RS02005	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_RS02100	PWY-3961	phosphopantothenate biosynthesis II
APY29_RS02130	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APY29_RS02130	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_RS02130	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS02130	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APY29_RS02130	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_RS02130	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_RS02160	PWY-31	canavanine degradation
APY29_RS02160	PWY-4984	urea cycle
APY29_RS02160	PWY-6305	putrescine biosynthesis IV
APY29_RS02160	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APY29_RS02455	PWY-6902	chitin degradation II
APY29_RS02455	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
APY29_RS02455	PWY-7822	APY29_RS02455
APY29_RS02480	PWY-40	putrescine biosynthesis I
APY29_RS02480	PWY-43	putrescine biosynthesis II
APY29_RS02480	PWY-6305	putrescine biosynthesis IV
APY29_RS02480	PWY-6834	spermidine biosynthesis III
APY29_RS02490	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_RS02490	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_RS02490	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_RS02490	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_RS02525	PWY-7851	APY29_RS02525
APY29_RS02545	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APY29_RS02545	PWY-622	starch biosynthesis
APY29_RS02585	PWY-5686	UMP biosynthesis
APY29_RS02585	PWY-7790	APY29_RS02585
APY29_RS02585	PWY-7791	APY29_RS02585
APY29_RS02650	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
APY29_RS02650	PWY-6853	ethylene biosynthesis II (microbes)
APY29_RS02650	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APY29_RS02665	PWY-3781	aerobic respiration I (cytochrome c)
APY29_RS02665	PWY-4521	arsenite oxidation I (respiratory)
APY29_RS02665	PWY-6692	Fe(II) oxidation
APY29_RS02665	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_RS02745	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
APY29_RS02745	PWY-5368	dimorphecolate biosynthesis
APY29_RS02745	PWY-5995	linoleate biosynthesis I (plants)
APY29_RS02745	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
APY29_RS02745	PWY-6803	phosphatidylcholine acyl editing
APY29_RS02745	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
APY29_RS02745	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
APY29_RS02745	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APY29_RS02745	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APY29_RS02745	PWY-7470	phosphatidylcholine biosynthesis VII
APY29_RS02745	PWY-7618	ricinoleate biosynthesis
APY29_RS02750	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_RS02750	PWY-6148	tetrahydromethanopterin biosynthesis
APY29_RS02750	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APY29_RS02750	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_RS02790	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS02790	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_RS02790	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_RS02790	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS02790	PWY-5723	Rubisco shunt
APY29_RS02790	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS02790	PWY-6886	1-butanol autotrophic biosynthesis
APY29_RS02790	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS02790	PWY-7003	glycerol degradation to butanol
APY29_RS02790	PWY-7124	ethylene biosynthesis V (engineered)
APY29_RS02790	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APY29_RS02805	PWY-6454	vancomycin resistance I
APY29_RS02805	PWY-6455	vancomycin resistance II
APY29_RS02880	PWY-6700	queuosine biosynthesis
APY29_RS02895	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_RS02895	PWY-6549	L-glutamine biosynthesis III
APY29_RS02895	PWY-6728	methylaspartate cycle
APY29_RS02895	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS02895	PWY-7124	ethylene biosynthesis V (engineered)
APY29_RS02895	PWY-7254	TCA cycle VII (acetate-producers)
APY29_RS02895	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APY29_RS02915	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS03075	PWY-6825	phosphatidylcholine biosynthesis V
APY29_RS03110	PWY-6168	flavin biosynthesis III (fungi)
APY29_RS03110	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_RS03220	PWY-7799	APY29_RS03220
APY29_RS03220	PWY-7800	APY29_RS03220
APY29_RS03380	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APY29_RS03380	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APY29_RS03380	PWY-7622	UDP-galactofuranose biosynthesis
APY29_RS03390	PWY-3821	galactose degradation III
APY29_RS03390	PWY-6317	galactose degradation I (Leloir pathway)
APY29_RS03390	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APY29_RS03390	PWY-6527	stachyose degradation
APY29_RS03390	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APY29_RS03390	PWY-7344	UDP-D-galactose biosynthesis
APY29_RS03670	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_RS03835	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APY29_RS03835	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APY29_RS03875	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS03885	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS03895	PWY-3461	L-tyrosine biosynthesis II
APY29_RS03895	PWY-3462	L-phenylalanine biosynthesis II
APY29_RS03895	PWY-6120	L-tyrosine biosynthesis III
APY29_RS03895	PWY-6627	salinosporamide A biosynthesis
APY29_RS03895	PWY-7626	bacilysin biosynthesis
APY29_RS03905	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_RS03905	PWY-5667	CDP-diacylglycerol biosynthesis I
APY29_RS03905	PWY-6453	stigma estolide biosynthesis
APY29_RS03905	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APY29_RS03905	PWY-7587	oleate biosynthesis III (cyanobacteria)
APY29_RS03945	PWY-6749	CMP-legionaminate biosynthesis I
APY29_RS03980	PWY-5386	methylglyoxal degradation I
APY29_RS04020	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_RS04020	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_RS04020	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_RS04020	PWY-5994	palmitate biosynthesis I (animals and fungi)
APY29_RS04020	PWY-6113	superpathway of mycolate biosynthesis
APY29_RS04020	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_RS04020	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_RS04020	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_RS04020	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_RS04020	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_RS04020	PWY-7858	APY29_RS04020
APY29_RS04020	PWYG-321	mycolate biosynthesis
APY29_RS04030	PWY-181	photorespiration
APY29_RS04055	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APY29_RS04165	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
APY29_RS04165	PWY-5739	GDP-D-perosamine biosynthesis
APY29_RS04165	PWY-5740	GDP-L-colitose biosynthesis
APY29_RS04165	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
APY29_RS04165	PWY-7573	GDP-mycosamine biosynthesis
APY29_RS04235	PWY-3221	dTDP-L-rhamnose biosynthesis II
APY29_RS04235	PWY-6808	dTDP-D-forosamine biosynthesis
APY29_RS04235	PWY-6942	dTDP-D-desosamine biosynthesis
APY29_RS04235	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APY29_RS04235	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APY29_RS04235	PWY-6974	dTDP-L-olivose biosynthesis
APY29_RS04235	PWY-6976	dTDP-L-mycarose biosynthesis
APY29_RS04235	PWY-7104	dTDP-L-megosamine biosynthesis
APY29_RS04235	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APY29_RS04235	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APY29_RS04235	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APY29_RS04235	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APY29_RS04235	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APY29_RS04235	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APY29_RS04235	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APY29_RS04235	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APY29_RS04235	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APY29_RS04235	PWY-7688	APY29_RS04235
APY29_RS04235	PWY-7814	APY29_RS04235
APY29_RS04240	PWY-3221	dTDP-L-rhamnose biosynthesis II
APY29_RS04240	PWY-6808	dTDP-D-forosamine biosynthesis
APY29_RS04240	PWY-6942	dTDP-D-desosamine biosynthesis
APY29_RS04240	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APY29_RS04240	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APY29_RS04240	PWY-6974	dTDP-L-olivose biosynthesis
APY29_RS04240	PWY-6976	dTDP-L-mycarose biosynthesis
APY29_RS04240	PWY-7104	dTDP-L-megosamine biosynthesis
APY29_RS04240	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APY29_RS04240	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APY29_RS04240	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APY29_RS04240	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APY29_RS04240	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APY29_RS04240	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APY29_RS04240	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APY29_RS04240	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APY29_RS04240	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APY29_RS04240	PWY-7688	APY29_RS04240
APY29_RS04240	PWY-7814	APY29_RS04240
APY29_RS04255	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APY29_RS04255	PWY-7820	APY29_RS04255
APY29_RS04260	PWY-5659	GDP-mannose biosynthesis
APY29_RS04260	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
APY29_RS04265	PWY-6749	CMP-legionaminate biosynthesis I
APY29_RS04330	PWY-5669	phosphatidylethanolamine biosynthesis I
APY29_RS04430	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_RS04430	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APY29_RS04430	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APY29_RS04580	PWY-5381	pyridine nucleotide cycling (plants)
APY29_RS04595	PWY-1001	cellulose biosynthesis
APY29_RS04605	PWY-6788	cellulose degradation II (fungi)
APY29_RS04630	PWY-4202	arsenate detoxification I (glutaredoxin)
APY29_RS04630	PWY-4621	arsenate detoxification II (glutaredoxin)
APY29_RS04650	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
APY29_RS04655	PWY-6769	rhamnogalacturonan type I degradation I (fungi)
APY29_RS04655	PWY-6771	rhamnogalacturonan type I degradation II (bacteria)
APY29_RS04810	PWY-5676	acetyl-CoA fermentation to butanoate II
APY29_RS04810	PWY-5741	ethylmalonyl-CoA pathway
APY29_RS04810	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APY29_RS04900	PWY-1281	sulfoacetaldehyde degradation I
APY29_RS04900	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_RS04900	PWY-5482	pyruvate fermentation to acetate II
APY29_RS04900	PWY-5485	pyruvate fermentation to acetate IV
APY29_RS04900	PWY-5497	purine nucleobases degradation II (anaerobic)
APY29_RS04900	PWY-6637	sulfolactate degradation II
APY29_RS04900	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_RS04935	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
APY29_RS04975	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APY29_RS04980	PWY-6871	3-methylbutanol biosynthesis
APY29_RS04995	PWY-5101	L-isoleucine biosynthesis II
APY29_RS04995	PWY-5103	L-isoleucine biosynthesis III
APY29_RS04995	PWY-5104	L-isoleucine biosynthesis IV
APY29_RS04995	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APY29_RS04995	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APY29_RS04995	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APY29_RS04995	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_RS05000	PWY-5103	L-isoleucine biosynthesis III
APY29_RS05000	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_RS05005	PWY-4041	&gamma;-glutamyl cycle
APY29_RS05005	PWY-5826	hypoglycin biosynthesis
APY29_RS05025	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
APY29_RS05050	PWY-7805	APY29_RS05050
APY29_RS05050	PWY-7807	APY29_RS05050
APY29_RS05060	PWY-7805	APY29_RS05060
APY29_RS05060	PWY-7807	APY29_RS05060
APY29_RS05075	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS05075	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_RS05075	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS05075	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_RS05080	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS05165	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_RS05180	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APY29_RS05180	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APY29_RS05180	PWY-6897	thiamin salvage II
APY29_RS05180	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APY29_RS05180	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APY29_RS05180	PWY-7356	thiamin salvage IV (yeast)
APY29_RS05180	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APY29_RS05200	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_RS05200	PWY-5723	Rubisco shunt
APY29_RS05235	PWY-7799	APY29_RS05235
APY29_RS05235	PWY-7800	APY29_RS05235
APY29_RS05285	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS05405	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_RS05405	PWY-5723	Rubisco shunt
APY29_RS05405	PWY-6891	thiazole biosynthesis II (Bacillus)
APY29_RS05405	PWY-6892	thiazole biosynthesis I (E. coli)
APY29_RS05405	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS05405	PWY-7560	methylerythritol phosphate pathway II
APY29_RS05500	PWY-2582	brassinosteroid biosynthesis II
APY29_RS05500	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APY29_RS05500	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APY29_RS05500	PWY-6948	sitosterol degradation to androstenedione
APY29_RS05500	PWY-699	brassinosteroid biosynthesis I
APY29_RS05500	PWY-7299	progesterone biosynthesis
APY29_RS05505	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS05505	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS05505	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS05505	PWY-7003	glycerol degradation to butanol
APY29_RS05530	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS05530	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS05530	PWY-6886	1-butanol autotrophic biosynthesis
APY29_RS05530	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS05530	PWY-7003	glycerol degradation to butanol
APY29_RS05540	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS05540	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_RS05540	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS05540	PWY-5723	Rubisco shunt
APY29_RS05540	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS05540	PWY-6886	1-butanol autotrophic biosynthesis
APY29_RS05540	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS05540	PWY-7003	glycerol degradation to butanol
APY29_RS05540	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APY29_RS05540	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_RS05555	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS05555	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_RS05555	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS05555	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS05555	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_RS05565	PWY-6825	phosphatidylcholine biosynthesis V
APY29_RS05570	PWY-6936	seleno-amino acid biosynthesis
APY29_RS05575	PWY-5194	siroheme biosynthesis
APY29_RS05575	PWY-5196	factor 430 biosynthesis
APY29_RS05575	PWY-5441	S-methyl-L-methionine cycle
APY29_RS05575	PWY-702	L-methionine biosynthesis II
APY29_RS05575	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APY29_RS05620	PWY-6683	sulfate reduction III (assimilatory)
APY29_RS05625	PWY-6683	sulfate reduction III (assimilatory)
APY29_RS05630	PWY-5278	sulfite oxidation III
APY29_RS05630	PWY-5340	sulfate activation for sulfonation
APY29_RS05630	PWY-6683	sulfate reduction III (assimilatory)
APY29_RS05630	PWY-6932	selenate reduction
APY29_RS05635	PWY-5278	sulfite oxidation III
APY29_RS05635	PWY-5340	sulfate activation for sulfonation
APY29_RS05635	PWY-6683	sulfate reduction III (assimilatory)
APY29_RS05635	PWY-6932	selenate reduction
APY29_RS05700	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS05760	PWY-6891	thiazole biosynthesis II (Bacillus)
APY29_RS05760	PWY-6892	thiazole biosynthesis I (E. coli)
APY29_RS05895	PWY-7851	APY29_RS05895
APY29_RS05940	PWY-5392	reductive TCA cycle II
APY29_RS05940	PWY-5537	pyruvate fermentation to acetate V
APY29_RS05940	PWY-5538	pyruvate fermentation to acetate VI
APY29_RS05940	PWY-5690	TCA cycle II (plants and fungi)
APY29_RS05940	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_RS05940	PWY-6728	methylaspartate cycle
APY29_RS05940	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS05940	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_RS05945	PWY-5392	reductive TCA cycle II
APY29_RS05945	PWY-5537	pyruvate fermentation to acetate V
APY29_RS05945	PWY-5538	pyruvate fermentation to acetate VI
APY29_RS05945	PWY-5690	TCA cycle II (plants and fungi)
APY29_RS05945	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_RS05945	PWY-6728	methylaspartate cycle
APY29_RS05945	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS05945	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_RS05960	PWY-5381	pyridine nucleotide cycling (plants)
APY29_RS05960	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APY29_RS05960	PWY-7761	APY29_RS05960
APY29_RS06115	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APY29_RS06115	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APY29_RS06115	PWY-6268	adenosylcobalamin salvage from cobalamin
APY29_RS06115	PWY-6269	adenosylcobalamin salvage from cobinamide II
APY29_RS06135	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APY29_RS06135	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APY29_RS06135	PWY-6269	adenosylcobalamin salvage from cobinamide II
APY29_RS06140	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APY29_RS06140	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APY29_RS06140	PWY-6269	adenosylcobalamin salvage from cobinamide II
APY29_RS06150	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APY29_RS06150	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APY29_RS06150	PWY-6269	adenosylcobalamin salvage from cobinamide II
APY29_RS06385	PWY-6703	preQ<sub>0</sub> biosynthesis
APY29_RS06395	PWY-6703	preQ<sub>0</sub> biosynthesis
APY29_RS06485	PWY-2722	trehalose degradation IV
APY29_RS06485	PWY-2723	trehalose degradation V
APY29_RS06485	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_RS06485	PWY-5661	GDP-glucose biosynthesis
APY29_RS06485	PWY-621	sucrose degradation III (sucrose invertase)
APY29_RS06485	PWY-7238	sucrose biosynthesis II
APY29_RS06485	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_RS06510	PWY-6420	pyrroloquinoline quinone biosynthesis
APY29_RS06545	PWY-1001	cellulose biosynthesis
APY29_RS06545	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_RS06545	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_RS06545	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_RS06545	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_RS06560	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
APY29_RS06560	PWY-5368	dimorphecolate biosynthesis
APY29_RS06560	PWY-5995	linoleate biosynthesis I (plants)
APY29_RS06560	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
APY29_RS06560	PWY-6803	phosphatidylcholine acyl editing
APY29_RS06560	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
APY29_RS06560	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
APY29_RS06560	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APY29_RS06560	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APY29_RS06560	PWY-7470	phosphatidylcholine biosynthesis VII
APY29_RS06560	PWY-7618	ricinoleate biosynthesis
APY29_RS06675	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS06730	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS06755	PWY-2722	trehalose degradation IV
APY29_RS06755	PWY-2723	trehalose degradation V
APY29_RS06755	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_RS06755	PWY-5661	GDP-glucose biosynthesis
APY29_RS06755	PWY-621	sucrose degradation III (sucrose invertase)
APY29_RS06755	PWY-7238	sucrose biosynthesis II
APY29_RS06755	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_RS06760	PWY-2201	folate transformations I
APY29_RS06925	PWY-5344	L-homocysteine biosynthesis
APY29_RS06930	PWY-801	L-homocysteine and L-cysteine interconversion
APY29_RS07000	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APY29_RS07000	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APY29_RS07000	PWY-7766	APY29_RS07000
APY29_RS07010	PWY-6164	3-dehydroquinate biosynthesis I
APY29_RS07015	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_RS07020	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APY29_RS07020	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APY29_RS07225	PWY-7533	gliotoxin biosynthesis
APY29_RS07315	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APY29_RS07315	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APY29_RS07330	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_RS07330	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_RS07350	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_RS07350	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APY29_RS07365	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_RS07365	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APY29_RS07365	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APY29_RS07470	PWY-6823	molybdenum cofactor biosynthesis
APY29_RS07470	PWY-6891	thiazole biosynthesis II (Bacillus)
APY29_RS07470	PWY-6892	thiazole biosynthesis I (E. coli)
APY29_RS07470	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APY29_RS07530	PWY-3341	L-proline biosynthesis III
APY29_RS07530	PWY-4981	L-proline biosynthesis II (from arginine)
APY29_RS07530	PWY-6344	L-ornithine degradation II (Stickland reaction)
APY29_RS07535	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_RS07580	PWY-5686	UMP biosynthesis
APY29_RS07580	PWY-7790	APY29_RS07580
APY29_RS07580	PWY-7791	APY29_RS07580
APY29_RS07605	PWY-2941	L-lysine biosynthesis II
APY29_RS07605	PWY-2942	L-lysine biosynthesis III
APY29_RS07605	PWY-5097	L-lysine biosynthesis VI
APY29_RS07605	PWY-6559	spermidine biosynthesis II
APY29_RS07605	PWY-6562	norspermidine biosynthesis
APY29_RS07605	PWY-7153	grixazone biosynthesis
APY29_RS07620	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_RS07620	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_RS07755	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_RS07755	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS07895	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_RS08285	PWY-5381	pyridine nucleotide cycling (plants)
APY29_RS08285	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APY29_RS08285	PWY-7761	APY29_RS08285
APY29_RS08300	PWY-6825	phosphatidylcholine biosynthesis V
APY29_RS08390	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APY29_RS08390	PWY-5491	diethylphosphate degradation
APY29_RS08495	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS08610	PWY-5669	phosphatidylethanolamine biosynthesis I
APY29_RS08625	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_RS08635	PWY-2941	L-lysine biosynthesis II
APY29_RS08635	PWY-2942	L-lysine biosynthesis III
APY29_RS08635	PWY-5097	L-lysine biosynthesis VI
APY29_RS08635	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_RS08635	PWY-6559	spermidine biosynthesis II
APY29_RS08635	PWY-6562	norspermidine biosynthesis
APY29_RS08635	PWY-7153	grixazone biosynthesis
APY29_RS08635	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_RS08685	PWY-6679	jadomycin biosynthesis
APY29_RS08685	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_RS08690	PWY-6749	CMP-legionaminate biosynthesis I
APY29_RS08725	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS08725	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS08725	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS08725	PWY-7003	glycerol degradation to butanol
APY29_RS08855	PWY-5316	nicotine biosynthesis
APY29_RS08855	PWY-5381	pyridine nucleotide cycling (plants)
APY29_RS08855	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APY29_RS08855	PWY-7342	superpathway of nicotine biosynthesis
APY29_RS08865	PWY-6123	inosine-5'-phosphate biosynthesis I
APY29_RS08865	PWY-7234	inosine-5'-phosphate biosynthesis III
APY29_RS08875	PWY-6854	ethylene biosynthesis III (microbes)
APY29_RS09080	PWY-5941	glycogen degradation II (eukaryotic)
APY29_RS09080	PWY-6724	starch degradation II
APY29_RS09080	PWY-6737	starch degradation V
APY29_RS09080	PWY-7238	sucrose biosynthesis II
APY29_RS09155	PWY-6655	xanthan biosynthesis
APY29_RS09155	PWY-6658	acetan biosynthesis
APY29_RS09200	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APY29_RS09200	PWY-622	starch biosynthesis
APY29_RS09215	PWY-4381	fatty acid biosynthesis initiation I
APY29_RS09230	PWY-5129	sphingolipid biosynthesis (plants)
APY29_RS09230	PWY-7836	APY29_RS09230
APY29_RS09230	PWY-7838	APY29_RS09230
APY29_RS09230	PWY-7839	APY29_RS09230
APY29_RS09230	PWY-7841	APY29_RS09230
APY29_RS09240	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_RS09240	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_RS09240	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_RS09240	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_RS09245	PWY-6891	thiazole biosynthesis II (Bacillus)
APY29_RS09245	PWY-6892	thiazole biosynthesis I (E. coli)
APY29_RS09245	PWY-7560	methylerythritol phosphate pathway II
APY29_RS09490	PWY-7851	APY29_RS09490
APY29_RS09510	PWY-4041	&gamma;-glutamyl cycle
APY29_RS09510	PWY-5826	hypoglycin biosynthesis
APY29_RS09515	PWY-6788	cellulose degradation II (fungi)
APY29_RS09520	PWY-7183	pyrimidine nucleobases salvage I
APY29_RS09530	PWY-4702	phytate degradation I
APY29_RS09570	PWY-6700	queuosine biosynthesis
APY29_RS09575	PWY-6700	queuosine biosynthesis
APY29_RS09635	PWY-6619	adenine and adenosine salvage VI
APY29_RS09670	PWY-5022	4-aminobutanoate degradation V
APY29_RS09670	PWY-6728	methylaspartate cycle
APY29_RS09670	PWY-7126	ethylene biosynthesis IV
APY29_RS09765	PWY-381	nitrate reduction II (assimilatory)
APY29_RS09765	PWY-5675	nitrate reduction V (assimilatory)
APY29_RS09765	PWY-6549	L-glutamine biosynthesis III
APY29_RS09765	PWY-6963	ammonia assimilation cycle I
APY29_RS09765	PWY-6964	ammonia assimilation cycle II
APY29_RS09775	PWY-381	nitrate reduction II (assimilatory)
APY29_RS09775	PWY-5675	nitrate reduction V (assimilatory)
APY29_RS09775	PWY-6549	L-glutamine biosynthesis III
APY29_RS09775	PWY-6963	ammonia assimilation cycle I
APY29_RS09775	PWY-6964	ammonia assimilation cycle II
APY29_RS09890	PWY-3781	aerobic respiration I (cytochrome c)
APY29_RS09890	PWY-6692	Fe(II) oxidation
APY29_RS09890	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
APY29_RS09890	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_RS10040	PWY-6700	queuosine biosynthesis
APY29_RS10045	PWY-6938	NADH repair
APY29_RS10085	PWY-5676	acetyl-CoA fermentation to butanoate II
APY29_RS10085	PWY-5741	ethylmalonyl-CoA pathway
APY29_RS10085	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APY29_RS10135	PWY-6605	adenine and adenosine salvage II
APY29_RS10135	PWY-6610	adenine and adenosine salvage IV
APY29_RS10135	PWY-7805	APY29_RS10135
APY29_RS10135	PWY-7807	APY29_RS10135
APY29_RS10165	PWY-6854	ethylene biosynthesis III (microbes)
APY29_RS10170	PWY-2301	<i>myo</i>-inositol biosynthesis
APY29_RS10170	PWY-4702	phytate degradation I
APY29_RS10170	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
APY29_RS10175	PWY-6004	glycine betaine biosynthesis V (from glycine)
APY29_RS10210	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
APY29_RS10210	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
APY29_RS10210	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
APY29_RS10210	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
APY29_RS10210	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
APY29_RS10210	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
APY29_RS10210	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
APY29_RS10210	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
APY29_RS10210	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
APY29_RS10210	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
APY29_RS10215	PWY-181	photorespiration
APY29_RS10305	PWY-5686	UMP biosynthesis
APY29_RS10305	PWY-7790	APY29_RS10305
APY29_RS10305	PWY-7791	APY29_RS10305
APY29_RS10340	PWY-5686	UMP biosynthesis
APY29_RS10340	PWY-7790	APY29_RS10340
APY29_RS10340	PWY-7791	APY29_RS10340
APY29_RS10345	PWY-4983	L-citrulline-nitric oxide cycle
APY29_RS10345	PWY-4984	urea cycle
APY29_RS10345	PWY-5	canavanine biosynthesis
APY29_RS10345	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_RS10345	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_RS10360	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_RS10360	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_RS10370	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_RS10370	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_RS10375	PWY-4983	L-citrulline-nitric oxide cycle
APY29_RS10375	PWY-4984	urea cycle
APY29_RS10375	PWY-5	canavanine biosynthesis
APY29_RS10375	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_RS10375	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_RS10390	PWY-3341	L-proline biosynthesis III
APY29_RS10390	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APY29_RS10445	PWY-5344	L-homocysteine biosynthesis
APY29_RS10570	PWY-5941	glycogen degradation II (eukaryotic)
APY29_RS10570	PWY-6724	starch degradation II
APY29_RS10570	PWY-6737	starch degradation V
APY29_RS10570	PWY-7238	sucrose biosynthesis II
APY29_RS10595	PWY-43	putrescine biosynthesis II
APY29_RS10615	PWY-7205	CMP phosphorylation
APY29_RS10640	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_RS10640	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_RS10640	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_RS10640	PWY-6938	NADH repair
APY29_RS10650	PWY-3801	sucrose degradation II (sucrose synthase)
APY29_RS10650	PWY-6527	stachyose degradation
APY29_RS10650	PWY-7238	sucrose biosynthesis II
APY29_RS10650	PWY-7343	UDP-glucose biosynthesis
APY29_RS10650	PWY-7817	APY29_RS10650
APY29_RS10665	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APY29_RS10665	PWY-2201	folate transformations I
APY29_RS10665	PWY-3841	folate transformations II
APY29_RS10665	PWY-5030	L-histidine degradation III
APY29_RS10665	PWY-5497	purine nucleobases degradation II (anaerobic)
APY29_RS10665	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APY29_RS10670	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APY29_RS10670	PWY-6596	adenosine nucleotides degradation I
APY29_RS10670	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS10675	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS10905	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS10920	PWY-6502	oxidized GTP and dGTP detoxification
APY29_RS11060	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_RS11060	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APY29_RS11060	PWY-7242	D-fructuronate degradation
APY29_RS11060	PWY-7310	D-glucosaminate degradation
APY29_RS11060	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APY29_RS11065	PWY-5101	L-isoleucine biosynthesis II
APY29_RS11065	PWY-5103	L-isoleucine biosynthesis III
APY29_RS11065	PWY-5104	L-isoleucine biosynthesis IV
APY29_RS11065	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_RS11070	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_RS11070	PWY-6855	chitin degradation I (archaea)
APY29_RS11070	PWY-6906	chitin derivatives degradation
APY29_RS11075	PWY-2722	trehalose degradation IV
APY29_RS11075	PWY-2723	trehalose degradation V
APY29_RS11075	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_RS11075	PWY-5661	GDP-glucose biosynthesis
APY29_RS11075	PWY-621	sucrose degradation III (sucrose invertase)
APY29_RS11075	PWY-7238	sucrose biosynthesis II
APY29_RS11075	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_RS11080	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APY29_RS11110	PWY-3781	aerobic respiration I (cytochrome c)
APY29_RS11110	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APY29_RS11110	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_RS11110	PWY-5690	TCA cycle II (plants and fungi)
APY29_RS11110	PWY-6728	methylaspartate cycle
APY29_RS11110	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS11110	PWY-7254	TCA cycle VII (acetate-producers)
APY29_RS11110	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_RS11120	PWY-3781	aerobic respiration I (cytochrome c)
APY29_RS11120	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APY29_RS11120	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_RS11120	PWY-5690	TCA cycle II (plants and fungi)
APY29_RS11120	PWY-6728	methylaspartate cycle
APY29_RS11120	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS11120	PWY-7254	TCA cycle VII (acetate-producers)
APY29_RS11120	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_RS11175	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APY29_RS11195	PWY-5269	cardiolipin biosynthesis II
APY29_RS11195	PWY-5668	cardiolipin biosynthesis I
APY29_RS11195	PWY-7817	APY29_RS11195
APY29_RS11795	PWY-6012	acyl carrier protein metabolism I
APY29_RS11795	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APY29_RS11860	PWY-7158	L-phenylalanine degradation V
APY29_RS12130	PWY-5194	siroheme biosynthesis
APY29_RS12130	PWY-5196	factor 430 biosynthesis
APY29_RS12130	PWY-5441	S-methyl-L-methionine cycle
APY29_RS12130	PWY-702	L-methionine biosynthesis II
APY29_RS12130	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APY29_RS12140	PWY-5964	guanylyl molybdenum cofactor biosynthesis
APY29_RS12140	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
APY29_RS12145	PWY-6823	molybdenum cofactor biosynthesis
APY29_RS12320	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APY29_RS12320	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APY29_RS12480	PWY-6823	molybdenum cofactor biosynthesis
APY29_RS12510	PWY-2201	folate transformations I
APY29_RS12515	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APY29_RS12515	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APY29_RS12515	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_RS12515	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS12515	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APY29_RS12515	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_RS12515	PWY-7205	CMP phosphorylation
APY29_RS12515	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_RS12515	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS12515	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS12515	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS12515	PWY-7224	purine deoxyribonucleosides salvage
APY29_RS12515	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_RS12515	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APY29_RS12525	PWY-1361	benzoyl-CoA degradation I (aerobic)
APY29_RS12525	PWY-5109	2-methylbutanoate biosynthesis
APY29_RS12525	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APY29_RS12525	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APY29_RS12525	PWY-5177	glutaryl-CoA degradation
APY29_RS12525	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_RS12525	PWY-6435	4-hydroxybenzoate biosynthesis V
APY29_RS12525	PWY-6583	pyruvate fermentation to butanol I
APY29_RS12525	PWY-6863	pyruvate fermentation to hexanol
APY29_RS12525	PWY-6883	pyruvate fermentation to butanol II
APY29_RS12525	PWY-6944	androstenedione degradation
APY29_RS12525	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APY29_RS12525	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APY29_RS12525	PWY-7007	methyl ketone biosynthesis
APY29_RS12525	PWY-7046	4-coumarate degradation (anaerobic)
APY29_RS12525	PWY-7094	fatty acid salvage
APY29_RS12525	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APY29_RS12525	PWY-735	jasmonic acid biosynthesis
APY29_RS12525	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APY29_RS12525	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APY29_RS12525	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
APY29_RS12525	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
APY29_RS12525	PWY-7726	APY29_RS12525
APY29_RS12525	PWY-7778	APY29_RS12525
APY29_RS12525	PWY-7779	APY29_RS12525
APY29_RS12525	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
APY29_RS12580	PWY-7801	APY29_RS12580
APY29_RS12790	PWY-4381	fatty acid biosynthesis initiation I
APY29_RS12865	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS13225	PWY-5747	2-methylcitrate cycle II
APY29_RS13315	PWY-7805	APY29_RS13315
APY29_RS13315	PWY-7807	APY29_RS13315
APY29_RS13330	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_RS13330	PWY-5686	UMP biosynthesis
APY29_RS13330	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_RS13330	PWY-7790	APY29_RS13330
APY29_RS13330	PWY-7791	APY29_RS13330
APY29_RS13340	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_RS13340	PWY-5686	UMP biosynthesis
APY29_RS13340	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_RS13340	PWY-7790	APY29_RS13340
APY29_RS13340	PWY-7791	APY29_RS13340
APY29_RS13345	PWY-2941	L-lysine biosynthesis II
APY29_RS13345	PWY-2942	L-lysine biosynthesis III
APY29_RS13345	PWY-5097	L-lysine biosynthesis VI
APY29_RS13445	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APY29_RS13445	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_RS13445	PWY-6416	quinate degradation II
APY29_RS13445	PWY-6707	gallate biosynthesis
APY29_RS13450	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APY29_RS13450	PWY-5389	3-methylthiopropanoate biosynthesis
APY29_RS13540	PWY-702	L-methionine biosynthesis II
APY29_RS13545	PWY-2941	L-lysine biosynthesis II
APY29_RS13545	PWY-2942	L-lysine biosynthesis III
APY29_RS13545	PWY-5097	L-lysine biosynthesis VI
APY29_RS13545	PWY-6559	spermidine biosynthesis II
APY29_RS13545	PWY-6562	norspermidine biosynthesis
APY29_RS13545	PWY-7153	grixazone biosynthesis
APY29_RS13620	PWY-5686	UMP biosynthesis
APY29_RS13625	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_RS13625	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_RS13640	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_RS13640	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_RS13730	PWY-3801	sucrose degradation II (sucrose synthase)
APY29_RS13730	PWY-5054	sorbitol biosynthesis I
APY29_RS13730	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APY29_RS13730	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_RS13730	PWY-5659	GDP-mannose biosynthesis
APY29_RS13730	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS13730	PWY-621	sucrose degradation III (sucrose invertase)
APY29_RS13730	PWY-622	starch biosynthesis
APY29_RS13730	PWY-6981	chitin biosynthesis
APY29_RS13730	PWY-6992	1,5-anhydrofructose degradation
APY29_RS13730	PWY-7238	sucrose biosynthesis II
APY29_RS13730	PWY-7347	sucrose biosynthesis III
APY29_RS13730	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_RS13735	PWY-5155	&beta;-alanine biosynthesis III
APY29_RS13745	PWY-6654	phosphopantothenate biosynthesis III
APY29_RS13750	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_RS13750	PWY-6148	tetrahydromethanopterin biosynthesis
APY29_RS13750	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APY29_RS13750	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_RS13750	PWY-7852	APY29_RS13750
APY29_RS13750	PWY-7853	APY29_RS13750
APY29_RS13765	PWY-5663	tetrahydrobiopterin biosynthesis I
APY29_RS13765	PWY-5664	tetrahydrobiopterin biosynthesis II
APY29_RS13765	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_RS13765	PWY-6703	preQ<sub>0</sub> biosynthesis
APY29_RS13765	PWY-6983	tetrahydrobiopterin biosynthesis III
APY29_RS13765	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APY29_RS13765	PWY-7852	APY29_RS13765
APY29_RS13800	PWY-4261	glycerol degradation I
APY29_RS13815	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS13820	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS13850	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_RS13850	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APY29_RS13850	PWY-7242	D-fructuronate degradation
APY29_RS13850	PWY-7310	D-glucosaminate degradation
APY29_RS13850	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APY29_RS13855	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS13855	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_RS13855	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_RS13855	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS13855	PWY-5723	Rubisco shunt
APY29_RS13855	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS13855	PWY-6886	1-butanol autotrophic biosynthesis
APY29_RS13855	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS13855	PWY-7003	glycerol degradation to butanol
APY29_RS13855	PWY-7124	ethylene biosynthesis V (engineered)
APY29_RS13855	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APY29_RS13865	PWY-7130	L-glucose degradation
APY29_RS13880	PWY-2941	L-lysine biosynthesis II
APY29_RS13880	PWY-2942	L-lysine biosynthesis III
APY29_RS13880	PWY-5097	L-lysine biosynthesis VI
APY29_RS13915	PWY-6910	hydroxymethylpyrimidine salvage
APY29_RS13915	PWY-7356	thiamin salvage IV (yeast)
APY29_RS13915	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APY29_RS14015	PWY-2781	<i>cis</i>-zeatin biosynthesis
APY29_RS14020	PWY-6614	tetrahydrofolate biosynthesis
APY29_RS14060	PWY-5381	pyridine nucleotide cycling (plants)
APY29_RS14060	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APY29_RS14060	PWY-6596	adenosine nucleotides degradation I
APY29_RS14060	PWY-6606	guanosine nucleotides degradation II
APY29_RS14060	PWY-6607	guanosine nucleotides degradation I
APY29_RS14060	PWY-6608	guanosine nucleotides degradation III
APY29_RS14060	PWY-7185	UTP and CTP dephosphorylation I
APY29_RS14060	PWY-7821	APY29_RS14060
APY29_RS14075	PWY-7560	methylerythritol phosphate pathway II
APY29_RS14090	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS14090	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_RS14090	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_RS14090	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS14090	PWY-5723	Rubisco shunt
APY29_RS14090	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS14090	PWY-6886	1-butanol autotrophic biosynthesis
APY29_RS14090	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS14090	PWY-7003	glycerol degradation to butanol
APY29_RS14090	PWY-7124	ethylene biosynthesis V (engineered)
APY29_RS14090	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APY29_RS14100	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APY29_RS14100	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APY29_RS14105	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APY29_RS14105	PWY-7177	UTP and CTP dephosphorylation II
APY29_RS14105	PWY-7185	UTP and CTP dephosphorylation I
APY29_RS14260	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APY29_RS14260	PWY-7688	APY29_RS14260
APY29_RS14470	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APY29_RS14485	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_RS14545	PWY-5028	L-histidine degradation II
APY29_RS14545	PWY-5030	L-histidine degradation III
APY29_RS14550	PWY-5028	L-histidine degradation II
APY29_RS14550	PWY-5030	L-histidine degradation III
APY29_RS14560	PWY-5028	L-histidine degradation II
APY29_RS14560	PWY-5030	L-histidine degradation III
APY29_RS14580	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APY29_RS14580	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
APY29_RS14745	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_RS14745	PWY-5743	3-hydroxypropanoate cycle
APY29_RS14745	PWY-5744	glyoxylate assimilation
APY29_RS14745	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_RS14745	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS14745	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_RS14745	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_RS14750	PWY-5647	2-nitrobenzoate degradation I
APY29_RS14750	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APY29_RS14750	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APY29_RS14750	PWY-6505	L-tryptophan degradation XII (Geobacillus)
APY29_RS14760	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APY29_RS14760	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APY29_RS14765	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APY29_RS14765	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APY29_RS14765	PWY-7717	APY29_RS14765
APY29_RS14765	PWY-7765	APY29_RS14765
APY29_RS14790	PWY-5381	pyridine nucleotide cycling (plants)
APY29_RS14790	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APY29_RS14790	PWY-6596	adenosine nucleotides degradation I
APY29_RS14790	PWY-6606	guanosine nucleotides degradation II
APY29_RS14790	PWY-6607	guanosine nucleotides degradation I
APY29_RS14790	PWY-6608	guanosine nucleotides degradation III
APY29_RS14790	PWY-7185	UTP and CTP dephosphorylation I
APY29_RS14790	PWY-7821	APY29_RS14790
APY29_RS14795	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APY29_RS14795	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APY29_RS14795	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APY29_RS14800	PWY-6825	phosphatidylcholine biosynthesis V
APY29_RS14875	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_RS14875	PWY-5743	3-hydroxypropanoate cycle
APY29_RS14875	PWY-5744	glyoxylate assimilation
APY29_RS14875	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_RS14875	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS14875	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_RS14875	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_RS14945	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_RS14995	PWY-2201	folate transformations I
APY29_RS14995	PWY-3841	folate transformations II
APY29_RS15035	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APY29_RS15035	PWY-7820	APY29_RS15035
APY29_RS15085	PWY-5392	reductive TCA cycle II
APY29_RS15085	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_RS15085	PWY-5690	TCA cycle II (plants and fungi)
APY29_RS15085	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_RS15085	PWY-6728	methylaspartate cycle
APY29_RS15085	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS15085	PWY-7254	TCA cycle VII (acetate-producers)
APY29_RS15085	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_RS15120	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APY29_RS15125	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APY29_RS15130	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APY29_RS15130	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APY29_RS15175	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
APY29_RS15180	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APY29_RS15180	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APY29_RS15440	PWY-6803	phosphatidylcholine acyl editing
APY29_RS15440	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APY29_RS15440	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APY29_RS15440	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
APY29_RS15440	PWY-7783	APY29_RS15440
APY29_RS15445	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_RS15445	PWY-5743	3-hydroxypropanoate cycle
APY29_RS15445	PWY-5744	glyoxylate assimilation
APY29_RS15445	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_RS15445	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS15445	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_RS15445	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_RS15455	PWY-5392	reductive TCA cycle II
APY29_RS15455	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_RS15455	PWY-5690	TCA cycle II (plants and fungi)
APY29_RS15455	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_RS15455	PWY-6728	methylaspartate cycle
APY29_RS15455	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS15455	PWY-7254	TCA cycle VII (acetate-producers)
APY29_RS15455	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_RS15615	PWY-7799	APY29_RS15615
APY29_RS15615	PWY-7800	APY29_RS15615
APY29_RS15680	PWY-5667	CDP-diacylglycerol biosynthesis I
APY29_RS15680	PWY-5981	CDP-diacylglycerol biosynthesis III
APY29_RS15680	PWY-7817	APY29_RS15680
APY29_RS15685	PWY-7294	xylose degradation IV
APY29_RS15685	PWY-7295	L-arabinose degradation IV
APY29_RS15685	PWY-7560	methylerythritol phosphate pathway II
APY29_RS15710	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_RS15710	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_RS15710	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_RS15710	PWY-5994	palmitate biosynthesis I (animals and fungi)
APY29_RS15710	PWY-6113	superpathway of mycolate biosynthesis
APY29_RS15710	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_RS15710	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_RS15710	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_RS15710	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_RS15710	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_RS15710	PWY-7858	APY29_RS15710
APY29_RS15710	PWYG-321	mycolate biosynthesis
APY29_RS15720	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APY29_RS15720	PWY-622	starch biosynthesis
APY29_RS15735	PWY-6679	jadomycin biosynthesis
APY29_RS15735	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_RS16110	PWY-6902	chitin degradation II
APY29_RS16110	PWY-7822	APY29_RS16110
APY29_RS16190	PWY-1361	benzoyl-CoA degradation I (aerobic)
APY29_RS16190	PWY-5109	2-methylbutanoate biosynthesis
APY29_RS16190	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APY29_RS16190	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APY29_RS16190	PWY-5177	glutaryl-CoA degradation
APY29_RS16190	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_RS16190	PWY-6435	4-hydroxybenzoate biosynthesis V
APY29_RS16190	PWY-6583	pyruvate fermentation to butanol I
APY29_RS16190	PWY-6863	pyruvate fermentation to hexanol
APY29_RS16190	PWY-6883	pyruvate fermentation to butanol II
APY29_RS16190	PWY-6944	androstenedione degradation
APY29_RS16190	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APY29_RS16190	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APY29_RS16190	PWY-7007	methyl ketone biosynthesis
APY29_RS16190	PWY-7046	4-coumarate degradation (anaerobic)
APY29_RS16190	PWY-7094	fatty acid salvage
APY29_RS16190	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APY29_RS16190	PWY-735	jasmonic acid biosynthesis
APY29_RS16190	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APY29_RS16190	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APY29_RS16190	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
APY29_RS16190	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
APY29_RS16190	PWY-7726	APY29_RS16190
APY29_RS16190	PWY-7778	APY29_RS16190
APY29_RS16190	PWY-7779	APY29_RS16190
APY29_RS16190	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
APY29_RS16220	PWY-5642	2,4-dinitrotoluene degradation
APY29_RS16220	PWY-6373	acrylate degradation
APY29_RS16240	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS16310	PWY-5506	methanol oxidation to formaldehyde IV
APY29_RS16340	PWY-6829	tRNA methylation (yeast)
APY29_RS16340	PWY-7285	methylwyosine biosynthesis
APY29_RS16340	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
APY29_RS16360	PWY-723	alkylnitronates degradation
APY29_RS16385	PWY-6317	galactose degradation I (Leloir pathway)
APY29_RS16530	PWY-3781	aerobic respiration I (cytochrome c)
APY29_RS16530	PWY-4521	arsenite oxidation I (respiratory)
APY29_RS16530	PWY-6692	Fe(II) oxidation
APY29_RS16530	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_RS16530	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
APY29_RS16675	PWY-7560	methylerythritol phosphate pathway II
APY29_RS16690	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APY29_RS16690	PWY-6167	flavin biosynthesis II (archaea)
APY29_RS16690	PWY-6168	flavin biosynthesis III (fungi)
APY29_RS16690	PWY-7863	APY29_RS16690
APY29_RS16765	PWY-7799	APY29_RS16765
APY29_RS17240	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS17345	PWY-5747	2-methylcitrate cycle II
APY29_RS17380	PWY-5958	acridone alkaloid biosynthesis
APY29_RS17380	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APY29_RS17380	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APY29_RS17395	PWY-5367	petroselinate biosynthesis
APY29_RS17395	PWY-5515	L-arabinose degradation II
APY29_RS17395	PWY-5525	D-glucuronate degradation I
APY29_RS17395	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_RS17395	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_RS17395	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_RS17395	PWY-5994	palmitate biosynthesis I (animals and fungi)
APY29_RS17395	PWY-6113	superpathway of mycolate biosynthesis
APY29_RS17395	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_RS17395	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_RS17395	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_RS17395	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_RS17395	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_RS17395	PWY-7858	APY29_RS17395
APY29_RS17395	PWYG-321	mycolate biosynthesis
APY29_RS17400	PWY-4381	fatty acid biosynthesis initiation I
APY29_RS17400	PWY-6799	fatty acid biosynthesis (plant mitochondria)
APY29_RS17400	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_RS17410	PWY-4381	fatty acid biosynthesis initiation I
APY29_RS17495	PWY-6823	molybdenum cofactor biosynthesis
APY29_RS17520	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
APY29_RS17520	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
APY29_RS17560	PWY-5386	methylglyoxal degradation I
APY29_RS17735	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_RS17735	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APY29_RS17735	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APY29_RS17735	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APY29_RS17750	PWY-2161	folate polyglutamylation
APY29_RS17770	PWY-7782	APY29_RS17770
APY29_RS17770	PWY-7783	APY29_RS17770
APY29_RS17785	PWY-5515	L-arabinose degradation II
APY29_RS17785	PWY-5525	D-glucuronate degradation I
APY29_RS17785	PWY-7378	aminopropanol phosphate biosynthesis II
APY29_RS17875	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_RS17875	PWY-5392	reductive TCA cycle II
APY29_RS17875	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_RS17875	PWY-5690	TCA cycle II (plants and fungi)
APY29_RS17875	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_RS17875	PWY-6728	methylaspartate cycle
APY29_RS17875	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS17875	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_RS17875	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_RS17905	PWY-6164	3-dehydroquinate biosynthesis I
APY29_RS18155	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
APY29_RS18175	PWY-7560	methylerythritol phosphate pathway II
APY29_RS18190	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_RS18235	PWY-7731	APY29_RS18235
APY29_RS18275	PWY-5057	L-valine degradation II
APY29_RS18275	PWY-5076	L-leucine degradation III
APY29_RS18275	PWY-5078	L-isoleucine degradation II
APY29_RS18275	PWY-5101	L-isoleucine biosynthesis II
APY29_RS18275	PWY-5103	L-isoleucine biosynthesis III
APY29_RS18275	PWY-5104	L-isoleucine biosynthesis IV
APY29_RS18275	PWY-5108	L-isoleucine biosynthesis V
APY29_RS18275	PWY-7767	APY29_RS18275
APY29_RS18395	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_RS18395	PWY-5723	Rubisco shunt
APY29_RS18410	PWY-2582	brassinosteroid biosynthesis II
APY29_RS18410	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APY29_RS18410	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APY29_RS18410	PWY-6948	sitosterol degradation to androstenedione
APY29_RS18410	PWY-699	brassinosteroid biosynthesis I
APY29_RS18410	PWY-7299	progesterone biosynthesis
APY29_RS18440	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_RS18485	PWY-5530	sorbitol biosynthesis II
APY29_RS18580	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APY29_RS18580	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APY29_RS18580	PWY-6268	adenosylcobalamin salvage from cobalamin
APY29_RS18580	PWY-6269	adenosylcobalamin salvage from cobinamide II
APY29_RS18610	PWY-7294	xylose degradation IV
APY29_RS18610	PWY-7295	L-arabinose degradation IV
APY29_RS18670	PWY-7723	APY29_RS18670
APY29_RS18705	PWY-3841	folate transformations II
APY29_RS18705	PWY-6614	tetrahydrofolate biosynthesis
APY29_RS18715	PWY-3841	folate transformations II
APY29_RS18715	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_RS18715	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_RS18715	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_RS18715	PWY-7199	pyrimidine deoxyribonucleosides salvage
APY29_RS18715	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_RS18740	PWY-7039	phosphatidate metabolism, as a signaling molecule
APY29_RS18740	PWY-7817	APY29_RS18740
APY29_RS18860	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APY29_RS18860	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
APY29_RS18900	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_RS18900	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_RS18900	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_RS18900	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS18900	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
APY29_RS18900	PWY-6549	L-glutamine biosynthesis III
APY29_RS18900	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_RS18900	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_RS18900	PWY-7124	ethylene biosynthesis V (engineered)
APY29_RS18910	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APY29_RS18980	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS18985	PWY-2201	folate transformations I
APY29_RS18985	PWY-3841	folate transformations II
APY29_RS18995	PWY-6502	oxidized GTP and dGTP detoxification
APY29_RS18995	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APY29_RS18995	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APY29_RS18995	PWY-6897	thiamin salvage II
APY29_RS18995	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APY29_RS18995	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APY29_RS18995	PWY-7356	thiamin salvage IV (yeast)
APY29_RS18995	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APY29_RS19015	PWY-2201	folate transformations I
APY29_RS19015	PWY-5497	purine nucleobases degradation II (anaerobic)
APY29_RS19035	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_RS19035	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_RS19040	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_RS19040	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_RS19045	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_RS19045	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_RS19045	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_RS19045	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_RS19055	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_RS19055	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_RS19055	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_RS19060	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_RS19060	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_RS19080	PWY-2201	folate transformations I
APY29_RS19110	PWY-2201	folate transformations I
APY29_RS19200	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APY29_RS19200	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APY29_RS19200	PWY-6896	thiamin salvage I
APY29_RS19200	PWY-6897	thiamin salvage II
APY29_RS19210	PWY-6167	flavin biosynthesis II (archaea)
APY29_RS19210	PWY-6168	flavin biosynthesis III (fungi)
APY29_RS19215	PWY-6167	flavin biosynthesis II (archaea)
APY29_RS19215	PWY-6168	flavin biosynthesis III (fungi)
APY29_RS19215	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_RS19220	PWY-6167	flavin biosynthesis II (archaea)
APY29_RS19220	PWY-6168	flavin biosynthesis III (fungi)
APY29_RS19220	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS19235	PWY-5525	D-glucuronate degradation I
APY29_RS19250	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_RS19250	PWY-181	photorespiration
APY29_RS19250	PWY-2161	folate polyglutamylation
APY29_RS19250	PWY-2201	folate transformations I
APY29_RS19250	PWY-3661	glycine betaine degradation I
APY29_RS19250	PWY-3661-1	glycine betaine degradation II (mammalian)
APY29_RS19250	PWY-3841	folate transformations II
APY29_RS19250	PWY-5497	purine nucleobases degradation II (anaerobic)
APY29_RS19290	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_RS19295	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_RS19300	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_RS19300	PWY-3162	L-tryptophan degradation V (side chain pathway)
APY29_RS19300	PWY-5057	L-valine degradation II
APY29_RS19300	PWY-5076	L-leucine degradation III
APY29_RS19300	PWY-5078	L-isoleucine degradation II
APY29_RS19300	PWY-5079	L-phenylalanine degradation III
APY29_RS19300	PWY-5082	L-methionine degradation III
APY29_RS19300	PWY-5480	pyruvate fermentation to ethanol I
APY29_RS19300	PWY-5486	pyruvate fermentation to ethanol II
APY29_RS19300	PWY-5751	phenylethanol biosynthesis
APY29_RS19300	PWY-6313	serotonin degradation
APY29_RS19300	PWY-6333	acetaldehyde biosynthesis I
APY29_RS19300	PWY-6342	noradrenaline and adrenaline degradation
APY29_RS19300	PWY-6454	vancomycin resistance I
APY29_RS19300	PWY-6587	pyruvate fermentation to ethanol III
APY29_RS19300	PWY-6802	salidroside biosynthesis
APY29_RS19300	PWY-6871	3-methylbutanol biosynthesis
APY29_RS19300	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS19300	PWY-7013	L-1,2-propanediol degradation
APY29_RS19300	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_RS19300	PWY-7118	chitin degradation to ethanol
APY29_RS19300	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APY29_RS19300	PWY-7798	APY29_RS19300
APY29_RS19330	PWY-6840	homoglutathione biosynthesis
APY29_RS19330	PWY-7255	ergothioneine biosynthesis I (bacteria)
APY29_RS19385	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
APY29_RS19385	PWY-7494	choline degradation IV
APY29_RS19390	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
APY29_RS19390	PWY-7494	choline degradation IV
APY29_RS19405	PWY-6906	chitin derivatives degradation
APY29_RS19405	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
APY29_RS19405	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
APY29_RS19440	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS19550	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_RS19550	PWY-6148	tetrahydromethanopterin biosynthesis
APY29_RS19550	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APY29_RS19550	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_RS19550	PWY-7852	APY29_RS19550
APY29_RS19550	PWY-7853	APY29_RS19550
APY29_RS19610	PWY-5381	pyridine nucleotide cycling (plants)
APY29_RS19640	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APY29_RS19640	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APY29_RS19645	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APY29_RS19645	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APY29_RS19660	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_RS19660	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_RS19725	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_RS19725	PWY-3162	L-tryptophan degradation V (side chain pathway)
APY29_RS19725	PWY-5057	L-valine degradation II
APY29_RS19725	PWY-5076	L-leucine degradation III
APY29_RS19725	PWY-5078	L-isoleucine degradation II
APY29_RS19725	PWY-5079	L-phenylalanine degradation III
APY29_RS19725	PWY-5082	L-methionine degradation III
APY29_RS19725	PWY-5480	pyruvate fermentation to ethanol I
APY29_RS19725	PWY-5486	pyruvate fermentation to ethanol II
APY29_RS19725	PWY-5751	phenylethanol biosynthesis
APY29_RS19725	PWY-6313	serotonin degradation
APY29_RS19725	PWY-6333	acetaldehyde biosynthesis I
APY29_RS19725	PWY-6342	noradrenaline and adrenaline degradation
APY29_RS19725	PWY-6454	vancomycin resistance I
APY29_RS19725	PWY-6587	pyruvate fermentation to ethanol III
APY29_RS19725	PWY-6802	salidroside biosynthesis
APY29_RS19725	PWY-6871	3-methylbutanol biosynthesis
APY29_RS19725	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS19725	PWY-7013	L-1,2-propanediol degradation
APY29_RS19725	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_RS19725	PWY-7118	chitin degradation to ethanol
APY29_RS19725	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APY29_RS19725	PWY-7798	APY29_RS19725
APY29_RS19775	PWY-5839	menaquinol-7 biosynthesis
APY29_RS19775	PWY-5844	menaquinol-9 biosynthesis
APY29_RS19775	PWY-5849	menaquinol-6 biosynthesis
APY29_RS19775	PWY-5890	menaquinol-10 biosynthesis
APY29_RS19775	PWY-5891	menaquinol-11 biosynthesis
APY29_RS19775	PWY-5892	menaquinol-12 biosynthesis
APY29_RS19775	PWY-5895	menaquinol-13 biosynthesis
APY29_RS19820	PWY-2941	L-lysine biosynthesis II
APY29_RS19820	PWY-5097	L-lysine biosynthesis VI
APY29_RS19880	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_RS19880	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APY29_RS20105	PWY-4061	glutathione-mediated detoxification I
APY29_RS20105	PWY-6842	glutathione-mediated detoxification II
APY29_RS20105	PWY-7112	4-hydroxy-2-nonenal detoxification
APY29_RS20105	PWY-7533	gliotoxin biosynthesis
APY29_RS20185	PWY-6891	thiazole biosynthesis II (Bacillus)
APY29_RS20185	PWY-6892	thiazole biosynthesis I (E. coli)
APY29_RS20185	PWY-7560	methylerythritol phosphate pathway II
APY29_RS20240	PWY-5796	malonate decarboxylase activation
APY29_RS20245	PWY-5796	malonate decarboxylase activation
APY29_RS20250	PWY-6060	malonate degradation II (biotin-dependent)
APY29_RS20255	PWY-6060	malonate degradation II (biotin-dependent)
APY29_RS20255	PWY-6679	jadomycin biosynthesis
APY29_RS20255	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_RS20265	PWY-5794	malonate degradation I (biotin-independent)
APY29_RS20265	PWY-6060	malonate degradation II (biotin-dependent)
APY29_RS20345	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APY29_RS20345	PWY-6164	3-dehydroquinate biosynthesis I
APY29_RS20345	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APY29_RS20420	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_RS20420	PWY-6416	quinate degradation II
APY29_RS20420	PWY-6707	gallate biosynthesis
APY29_RS20535	PWY-6123	inosine-5'-phosphate biosynthesis I
APY29_RS20535	PWY-6124	inosine-5'-phosphate biosynthesis II
APY29_RS20535	PWY-7234	inosine-5'-phosphate biosynthesis III
APY29_RS20545	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_RS20545	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APY29_RS20545	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APY29_RS20595	PWY-5381	pyridine nucleotide cycling (plants)
APY29_RS20595	PWY-7761	APY29_RS20595
APY29_RS20600	PWY-6857	retinol biosynthesis
APY29_RS20685	PWY-6834	spermidine biosynthesis III
APY29_RS20715	PWY-5958	acridone alkaloid biosynthesis
APY29_RS20715	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APY29_RS20715	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APY29_RS20725	PWY-5958	acridone alkaloid biosynthesis
APY29_RS20725	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APY29_RS20725	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APY29_RS20740	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_RS20740	PWY-5723	Rubisco shunt
APY29_RS20755	PWY-6123	inosine-5'-phosphate biosynthesis I
APY29_RS20755	PWY-6124	inosine-5'-phosphate biosynthesis II
APY29_RS20755	PWY-7234	inosine-5'-phosphate biosynthesis III
APY29_RS20775	PWY-6855	chitin degradation I (archaea)
APY29_RS20775	PWY-6902	chitin degradation II
APY29_RS20775	PWY-7822	APY29_RS20775
APY29_RS20970	PWY-2661	trehalose biosynthesis V
APY29_RS20975	PWY-5941	glycogen degradation II (eukaryotic)
APY29_RS20975	PWY-6724	starch degradation II
APY29_RS20975	PWY-6737	starch degradation V
APY29_RS20975	PWY-7238	sucrose biosynthesis II
APY29_RS20980	PWY-2661	trehalose biosynthesis V
APY29_RS20980	PWY-6855	chitin degradation I (archaea)
APY29_RS20980	PWY-6902	chitin degradation II
APY29_RS20980	PWY-7822	APY29_RS20980
APY29_RS20985	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APY29_RS20985	PWY-622	starch biosynthesis
APY29_RS20990	PWY-622	starch biosynthesis
APY29_RS21060	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS21180	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APY29_RS21185	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_RS21185	PWY-6578	8-amino-7-oxononanoate biosynthesis III
APY29_RS21185	PWY-7147	8-amino-7-oxononanoate biosynthesis II
APY29_RS21195	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_RS21205	PWY-2201	folate transformations I
APY29_RS21205	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_RS21270	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
APY29_RS21275	PWY-6123	inosine-5'-phosphate biosynthesis I
APY29_RS21275	PWY-6124	inosine-5'-phosphate biosynthesis II
APY29_RS21275	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_RS21275	PWY-7234	inosine-5'-phosphate biosynthesis III
APY29_RS21290	PWY-1361	benzoyl-CoA degradation I (aerobic)
APY29_RS21290	PWY-2361	3-oxoadipate degradation
APY29_RS21290	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
APY29_RS21320	PWY-4261	glycerol degradation I
APY29_RS21320	PWY-6118	glycerol-3-phosphate shuttle
APY29_RS21320	PWY-6952	glycerophosphodiester degradation
APY29_RS21330	PWY-4261	glycerol degradation I
APY29_RS21405	PWY-5101	L-isoleucine biosynthesis II
APY29_RS21405	PWY-5103	L-isoleucine biosynthesis III
APY29_RS21405	PWY-5104	L-isoleucine biosynthesis IV
APY29_RS21405	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_RS21485	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APY29_RS21485	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APY29_RS21485	PWY-6936	seleno-amino acid biosynthesis
APY29_RS21485	PWY-702	L-methionine biosynthesis II
APY29_RS21495	PWY-7723	APY29_RS21495
APY29_RS21510	PWY-2201	folate transformations I
APY29_RS21510	PWY-3841	folate transformations II
APY29_RS21545	PWY-2201	folate transformations I
APY29_RS21545	PWY-5497	purine nucleobases degradation II (anaerobic)
APY29_RS21655	PWY-5169	cyanurate degradation
APY29_RS21655	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APY29_RS21660	PWY-4041	&gamma;-glutamyl cycle
APY29_RS21660	PWY-5826	hypoglycin biosynthesis
APY29_RS21685	PWY-6832	2-aminoethylphosphonate degradation II
APY29_RS21700	PWY-5691	urate degradation to allantoin I
APY29_RS21700	PWY-7394	urate degradation to allantoin II
APY29_RS21700	PWY-7849	APY29_RS21700
APY29_RS21710	PWY-5691	urate degradation to allantoin I
APY29_RS21710	PWY-7394	urate degradation to allantoin II
APY29_RS21710	PWY-7849	APY29_RS21710
APY29_RS21885	PWY-6679	jadomycin biosynthesis
APY29_RS21885	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_RS21920	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS21925	PWY-6728	methylaspartate cycle
APY29_RS21925	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_RS21925	PWY-7118	chitin degradation to ethanol
APY29_RS21925	PWY-7294	xylose degradation IV
APY29_RS21925	PWY-7295	L-arabinose degradation IV
APY29_RS21925	PWY-7854	APY29_RS21925
APY29_RS22010	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_RS22010	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_RS22055	PWY-4381	fatty acid biosynthesis initiation I
APY29_RS22070	PWY-6004	glycine betaine biosynthesis V (from glycine)
APY29_RS22115	PWY-5667	CDP-diacylglycerol biosynthesis I
APY29_RS22115	PWY-5981	CDP-diacylglycerol biosynthesis III
APY29_RS22145	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_RS22145	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APY29_RS22175	PWY-6854	ethylene biosynthesis III (microbes)
APY29_RS22180	PWY-6854	ethylene biosynthesis III (microbes)
APY29_RS22205	PWY-381	nitrate reduction II (assimilatory)
APY29_RS22205	PWY-5675	nitrate reduction V (assimilatory)
APY29_RS22205	PWY-6549	L-glutamine biosynthesis III
APY29_RS22205	PWY-6963	ammonia assimilation cycle I
APY29_RS22205	PWY-6964	ammonia assimilation cycle II
APY29_RS22210	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
APY29_RS22305	PWY-7255	ergothioneine biosynthesis I (bacteria)
APY29_RS22305	PWY-7550	ergothioneine biosynthesis II (fungi)
APY29_RS22365	PWY-6134	L-tyrosine biosynthesis IV
APY29_RS22365	PWY-7158	L-phenylalanine degradation V
APY29_RS22390	PWY-5515	L-arabinose degradation II
APY29_RS22390	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APY29_RS22390	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APY29_RS22395	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APY29_RS22605	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS22610	PWY-1042	glycolysis IV (plant cytosol)
APY29_RS22610	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_RS22610	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_RS22610	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_RS22610	PWY-5723	Rubisco shunt
APY29_RS22610	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_RS22610	PWY-6886	1-butanol autotrophic biosynthesis
APY29_RS22610	PWY-6901	superpathway of glucose and xylose degradation
APY29_RS22610	PWY-7003	glycerol degradation to butanol
APY29_RS22610	PWY-7124	ethylene biosynthesis V (engineered)
APY29_RS22610	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APY29_RS22625	PWY-6531	mannitol cycle
APY29_RS22685	PWY-4261	glycerol degradation I
APY29_RS22710	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
APY29_RS22715	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_RS22720	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
APY29_RS22720	PWY-7248	pectin degradation III
APY29_RS22735	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
APY29_RS22825	PWY-5667	CDP-diacylglycerol biosynthesis I
APY29_RS22825	PWY-6453	stigma estolide biosynthesis
APY29_RS22825	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APY29_RS22825	PWY-7587	oleate biosynthesis III (cyanobacteria)
APY29_RS22860	PWY-5686	UMP biosynthesis
APY29_RS22860	PWY-7790	APY29_RS22860
APY29_RS22860	PWY-7791	APY29_RS22860
APY29_RS22895	PWY-7199	pyrimidine deoxyribonucleosides salvage
APY29_RS22955	PWY-5874	heme degradation
APY29_RS23000	PWY-5663	tetrahydrobiopterin biosynthesis I
APY29_RS23000	PWY-5664	tetrahydrobiopterin biosynthesis II
APY29_RS23000	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_RS23000	PWY-6703	preQ<sub>0</sub> biosynthesis
APY29_RS23000	PWY-6983	tetrahydrobiopterin biosynthesis III
APY29_RS23000	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APY29_RS23000	PWY-7852	APY29_RS23000
APY29_RS23110	PWY-5169	cyanurate degradation
APY29_RS23110	PWY-5703	urea degradation I
APY29_RS23115	PWY-5169	cyanurate degradation
APY29_RS23115	PWY-5703	urea degradation I
APY29_RS23115	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APY29_RS23330	PWY-6348	phosphate acquisition