locus-tag class description BER92_RS00005 PF11638 DnaA N-terminal domain BER92_RS00005 PF00308 Bacterial dnaA protein BER92_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix BER92_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BER92_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BER92_RS00010 PF02767 DNA polymerase III beta subunit, central domain BER92_RS00020 PF02463 RecF/RecN/SMC N terminal domain BER92_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS00025 PF01751 Toprim domain BER92_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus BER92_RS00025 PF18053 DNA gyrase B subunit insert domain BER92_RS00025 PF00204 DNA gyrase B BER92_RS00035 PF01435 Peptidase family M48 BER92_RS00045 PF03544 Gram-negative bacterial TonB protein C-terminal BER92_RS00050 PF01618 MotA/TolQ/ExbB proton channel family BER92_RS00055 PF02472 Biopolymer transport protein ExbD/TolR BER92_RS00060 PF02472 Biopolymer transport protein ExbD/TolR BER92_RS00075 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BER92_RS00085 PF13396 Phospholipase_D-nuclease N-terminal BER92_RS00085 PF13091 PLD-like domain BER92_RS00100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BER92_RS00115 PF01842 ACT domain BER92_RS00115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER92_RS00115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BER92_RS00120 PF03572 Peptidase family S41 BER92_RS00120 PF13180 PDZ domain BER92_RS00125 PF01551 Peptidase family M23 BER92_RS00130 PF04389 Peptidase family M28 BER92_RS00145 PF01565 FAD binding domain BER92_RS00145 PF02913 FAD linked oxidases, C-terminal domain BER92_RS00175 PF01343 Peptidase family S49 BER92_RS00180 PF01554 MatE BER92_RS00195 PF00270 DEAD/DEAH box helicase BER92_RS00195 PF17764 3′ DNA-binding domain (3′BD) BER92_RS00195 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BER92_RS00195 PF18074 Primosomal protein N C-terminal domain BER92_RS00195 PF00271 Helicase conserved C-terminal domain BER92_RS00210 PF04545 Sigma-70, region 4 BER92_RS00210 PF04542 Sigma-70 region 2 BER92_RS00215 PF03167 Uracil DNA glycosylase superfamily BER92_RS00220 PF01339 CheB methylesterase BER92_RS00220 PF00072 Response regulator receiver domain BER92_RS00225 PF18075 FtsX extracellular domain BER92_RS00230 PF00005 ABC transporter BER92_RS00235 PF12300 ATP-dependent RNA helicase RhlB BER92_RS00235 PF00270 DEAD/DEAH box helicase BER92_RS00235 PF00271 Helicase conserved C-terminal domain BER92_RS00240 PF00085 Thioredoxin BER92_RS00245 PF07497 Rho termination factor, RNA-binding domain BER92_RS00245 PF07498 Rho termination factor, N-terminal domain BER92_RS00245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER92_RS00250 PF01609 Transposase DDE domain BER92_RS00250 PF13006 Insertion element 4 transposase N-terminal BER92_RS00255 PF03971 Monomeric isocitrate dehydrogenase BER92_RS00275 PF01476 LysM domain BER92_RS00275 PF04972 BON domain BER92_RS00280 PF14489 QueF-like protein BER92_RS00280 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BER92_RS00290 PF13533 Biotin-lipoyl like BER92_RS00295 PF00873 AcrB/AcrD/AcrF family BER92_RS00300 PF00873 AcrB/AcrD/AcrF family BER92_RS00315 PF07063 Domain of unknown function (DUF1338) BER92_RS00330 PF04349 Periplasmic glucan biosynthesis protein, MdoG BER92_RS00335 PF00265 Thymidine kinase BER92_RS00340 PF00580 UvrD/REP helicase N-terminal domain BER92_RS00340 PF13361 UvrD-like helicase C-terminal domain BER92_RS00370 PF04337 Protein of unknown function, DUF480 BER92_RS00380 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BER92_RS00400 PF01553 Acyltransferase BER92_RS00405 PF08659 KR domain BER92_RS00405 PF08990 Erythronolide synthase docking BER92_RS00405 PF09277 Erythronolide synthase, docking BER92_RS00405 PF08240 Alcohol dehydrogenase GroES-like domain BER92_RS00405 PF00109 Beta-ketoacyl synthase, N-terminal domain BER92_RS00405 PF14765 Polyketide synthase dehydratase BER92_RS00405 PF00698 Acyl transferase domain BER92_RS00405 PF16197 Ketoacyl-synthetase C-terminal extension BER92_RS00405 PF02801 Beta-ketoacyl synthase, C-terminal domain BER92_RS00405 PF00550 Phosphopantetheine attachment site BER92_RS00455 PF13276 HTH-like domain BER92_RS00455 PF13683 Integrase core domain BER92_RS00460 PF01527 Transposase BER92_RS00480 PF13340 Putative transposase of IS4/5 family (DUF4096) BER92_RS00485 PF06903 VirK protein BER92_RS00515 PF00271 Helicase conserved C-terminal domain BER92_RS00515 PF00270 DEAD/DEAH box helicase BER92_RS00520 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BER92_RS00520 PF00364 Biotin-requiring enzyme BER92_RS00520 PF02817 e3 binding domain BER92_RS00530 PF02779 Transketolase, pyrimidine binding domain BER92_RS00530 PF02780 Transketolase, C-terminal domain BER92_RS00535 PF00676 Dehydrogenase E1 component BER92_RS00540 PF03301 Tryptophan 2,3-dioxygenase BER92_RS00545 PF00854 POT family BER92_RS00560 PF01047 MarR family BER92_RS00565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BER92_RS00570 PF04209 homogentisate 1,2-dioxygenase BER92_RS00595 PF08546 Ketopantoate reductase PanE/ApbA C terminal BER92_RS00595 PF02558 Ketopantoate reductase PanE/ApbA BER92_RS00605 PF01061 ABC-2 type transporter BER92_RS00610 PF00005 ABC transporter BER92_RS00615 PF00175 Oxidoreductase NAD-binding domain BER92_RS00615 PF00970 Oxidoreductase FAD-binding domain BER92_RS00615 PF00111 2Fe-2S iron-sulfur cluster binding domain BER92_RS00630 PF00005 ABC transporter BER92_RS00640 PF03544 Gram-negative bacterial TonB protein C-terminal BER92_RS00655 PF02798 Glutathione S-transferase, N-terminal domain BER92_RS00655 PF00043 Glutathione S-transferase, C-terminal domain BER92_RS00660 PF13333 Integrase core domain BER92_RS00660 PF13276 HTH-like domain BER92_RS00660 PF00665 Integrase core domain BER92_RS00715 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS00730 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS00730 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BER92_RS00730 PF13296 Putative type VI secretion system Rhs element Vgr BER92_RS00750 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS00760 PF01555 DNA methylase BER92_RS00900 PF05598 Transposase domain (DUF772) BER92_RS00905 PF05598 Transposase domain (DUF772) BER92_RS00925 PF04545 Sigma-70, region 4 BER92_RS00925 PF04542 Sigma-70 region 2 BER92_RS00925 PF00140 Sigma-70 factor, region 1.2 BER92_RS00925 PF03979 Sigma-70 factor, region 1.1 BER92_RS00925 PF04546 Sigma-70, non-essential region BER92_RS00925 PF04539 Sigma-70 region 3 BER92_RS00930 PF02580 D-Tyr-tRNA(Tyr) deacylase BER92_RS00940 PF00583 Acetyltransferase (GNAT) family BER92_RS00945 PF00925 GTP cyclohydrolase II BER92_RS00965 PF00535 Glycosyl transferase family 2 BER92_RS00975 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase BER92_RS00980 PF01189 16S rRNA methyltransferase RsmB/F BER92_RS00980 PF01029 NusB family BER92_RS00985 PF02911 Formyl transferase, C-terminal domain BER92_RS00985 PF00551 Formyl transferase BER92_RS00990 PF01327 Polypeptide deformylase BER92_RS00995 PF01476 LysM domain BER92_RS01000 PF02481 DNA recombination-mediator protein A BER92_RS01000 PF17782 DprA winged helix domain BER92_RS01005 PF04361 Protein of unknown function (DUF494) BER92_RS01020 PF13368 Topoisomerase C-terminal repeat BER92_RS01020 PF01751 Toprim domain BER92_RS01020 PF01131 DNA topoisomerase BER92_RS01025 PF01300 Telomere recombination BER92_RS01050 PF07715 TonB-dependent Receptor Plug Domain BER92_RS01050 PF00593 TonB dependent receptor BER92_RS01055 PF01103 Surface antigen BER92_RS01055 PF17243 POTRA domain TamA domain 1 BER92_RS01060 PF04357 TamB, inner membrane protein subunit of TAM complex BER92_RS01075 PF13570 PQQ-like domain BER92_RS01075 PF13360 PQQ-like domain BER92_RS01075 PF01011 PQQ enzyme repeat BER92_RS01095 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS01095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS01100 PF02659 Putative manganese efflux pump BER92_RS01105 PF09339 IclR helix-turn-helix domain BER92_RS01105 PF01614 Bacterial transcriptional regulator BER92_RS01110 PF07690 Major Facilitator Superfamily BER92_RS01115 PF05336 L-rhamnose mutarotase BER92_RS01120 PF13378 Enolase C-terminal domain-like BER92_RS01120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BER92_RS01125 PF01557 Fumarylacetoacetate (FAA) hydrolase family BER92_RS01140 PF00248 Aldo/keto reductase family BER92_RS01145 PF00072 Response regulator receiver domain BER92_RS01145 PF00196 Bacterial regulatory proteins, luxR family BER92_RS01150 PF16177 Acetyl-coenzyme A synthetase N-terminus BER92_RS01150 PF13193 AMP-binding enzyme C-terminal domain BER92_RS01150 PF00501 AMP-binding enzyme BER92_RS01160 PF04341 Protein of unknown function, DUF485 BER92_RS01165 PF00474 Sodium:solute symporter family BER92_RS01170 PF03372 Endonuclease/Exonuclease/phosphatase family BER92_RS01180 PF04226 Transglycosylase associated protein BER92_RS01185 PF01648 4'-phosphopantetheinyl transferase superfamily BER92_RS01195 PF02527 rRNA small subunit methyltransferase G BER92_RS01200 PF00873 AcrB/AcrD/AcrF family BER92_RS01210 PF00830 Ribosomal L28 family BER92_RS01215 PF00471 Ribosomal protein L33 BER92_RS01220 PF13091 PLD-like domain BER92_RS01220 PF13396 Phospholipase_D-nuclease N-terminal BER92_RS01230 PF00580 UvrD/REP helicase N-terminal domain BER92_RS01230 PF13361 UvrD-like helicase C-terminal domain BER92_RS01245 PF05598 Transposase domain (DUF772) BER92_RS01260 PF03099 Biotin/lipoate A/B protein ligase family BER92_RS01260 PF02237 Biotin protein ligase C terminal domain BER92_RS01260 PF08279 HTH domain BER92_RS01265 PF03309 Type III pantothenate kinase BER92_RS01285 PF13333 Integrase core domain BER92_RS01285 PF13276 HTH-like domain BER92_RS01285 PF00665 Integrase core domain BER92_RS01290 PF01527 Transposase BER92_RS01295 PF01609 Transposase DDE domain BER92_RS01295 PF05598 Transposase domain (DUF772) BER92_RS01310 PF05598 Transposase domain (DUF772) BER92_RS01325 PF00892 EamA-like transporter family BER92_RS01335 PF00579 tRNA synthetases class I (W and Y) BER92_RS01350 PF00491 Arginase family BER92_RS01370 PF05598 Transposase domain (DUF772) BER92_RS01375 PF02223 Thymidylate kinase BER92_RS01380 PF05598 Transposase domain (DUF772) BER92_RS01400 PF00883 Cytosol aminopeptidase family, catalytic domain BER92_RS01400 PF02789 Cytosol aminopeptidase family, N-terminal domain BER92_RS01405 PF13419 Haloacid dehalogenase-like hydrolase BER92_RS01410 PF01594 AI-2E family transporter BER92_RS01430 PF00595 PDZ domain BER92_RS01450 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS01450 PF08521 Two-component sensor kinase N-terminal BER92_RS01455 PF00072 Response regulator receiver domain BER92_RS01455 PF00486 Transcriptional regulatory protein, C terminal BER92_RS01490 PF01370 NAD dependent epimerase/dehydratase family BER92_RS01490 PF08338 Domain of unknown function (DUF1731) BER92_RS01530 PF01609 Transposase DDE domain BER92_RS01545 PF01139 tRNA-splicing ligase RtcB BER92_RS01550 PF00440 Bacterial regulatory proteins, tetR family BER92_RS01555 PF00111 2Fe-2S iron-sulfur cluster binding domain BER92_RS01555 PF00175 Oxidoreductase NAD-binding domain BER92_RS01555 PF00970 Oxidoreductase FAD-binding domain BER92_RS01560 PF00487 Fatty acid desaturase BER92_RS01565 PF12792 CSS motif domain associated with EAL BER92_RS01565 PF00563 EAL domain BER92_RS01580 PF13335 Magnesium chelatase, subunit ChlI C-terminal BER92_RS01580 PF01078 Magnesium chelatase, subunit ChlI BER92_RS01585 PF04380 Membrane fusogenic activity BER92_RS01590 PF00543 Nitrogen regulatory protein P-II BER92_RS01595 PF00754 F5/8 type C domain BER92_RS01595 PF00041 Fibronectin type III domain BER92_RS01595 PF07555 beta-N-acetylglucosaminidase BER92_RS01595 PF02838 Glycosyl hydrolase family 20, domain 2 BER92_RS01595 PF00963 Cohesin domain BER92_RS01615 PF17284 Spermidine synthase tetramerisation domain BER92_RS01620 PF17944 Arginine decarboxylase C-terminal helical extension BER92_RS01620 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BER92_RS01620 PF17810 Arginine decarboxylase helical bundle domain BER92_RS01625 PF01609 Transposase DDE domain BER92_RS01625 PF05598 Transposase domain (DUF772) BER92_RS01630 PF06812 ImpA, N-terminal, type VI secretion system BER92_RS01640 PF00476 DNA polymerase family A BER92_RS01640 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BER92_RS01640 PF01367 5'-3' exonuclease, C-terminal SAM fold BER92_RS01640 PF01612 3'-5' exonuclease BER92_RS01645 PF01218 Coproporphyrinogen III oxidase BER92_RS01680 PF04820 Tryptophan halogenase BER92_RS01685 PF00550 Phosphopantetheine attachment site BER92_RS01695 PF01553 Acyltransferase BER92_RS01700 PF07977 FabA-like domain BER92_RS01740 PF00535 Glycosyl transferase family 2 BER92_RS01750 PF02801 Beta-ketoacyl synthase, C-terminal domain BER92_RS01750 PF00109 Beta-ketoacyl synthase, N-terminal domain BER92_RS01755 PF05166 YcgL domain BER92_RS01770 PF00723 Glycosyl hydrolases family 15 BER92_RS01775 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BER92_RS01775 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BER92_RS01780 PF00999 Sodium/hydrogen exchanger family BER92_RS01780 PF02254 TrkA-N domain BER92_RS01785 PF00194 Eukaryotic-type carbonic anhydrase BER92_RS01790 PF03448 MgtE intracellular N domain BER92_RS01790 PF01769 Divalent cation transporter BER92_RS01790 PF00571 CBS domain BER92_RS01795 PF00583 Acetyltransferase (GNAT) family BER92_RS01795 PF13607 Succinyl-CoA ligase like flavodoxin domain BER92_RS01795 PF13380 CoA binding domain BER92_RS01805 PF00317 Ribonucleotide reductase, all-alpha domain BER92_RS01805 PF02867 Ribonucleotide reductase, barrel domain BER92_RS01805 PF03477 ATP cone domain BER92_RS01810 PF00268 Ribonucleotide reductase, small chain BER92_RS01830 PF03006 Haemolysin-III related BER92_RS01835 PF00270 DEAD/DEAH box helicase BER92_RS01835 PF09369 Domain of unknown function (DUF1998) BER92_RS01835 PF00271 Helicase conserved C-terminal domain BER92_RS01870 PF00873 AcrB/AcrD/AcrF family BER92_RS01875 PF00873 AcrB/AcrD/AcrF family BER92_RS01895 PF00398 Ribosomal RNA adenine dimethylase BER92_RS01935 PF01527 Transposase BER92_RS01940 PF07055 Enoyl reductase FAD binding domain BER92_RS01940 PF12241 Trans-2-enoyl-CoA reductase catalytic region BER92_RS01940 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BER92_RS01960 PF01070 FMN-dependent dehydrogenase BER92_RS01975 PF00155 Aminotransferase class I and II BER92_RS01980 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BER92_RS02010 PF00293 NUDIX domain BER92_RS02010 PF09297 NADH pyrophosphatase zinc ribbon domain BER92_RS02020 PF01447 Thermolysin metallopeptidase, catalytic domain BER92_RS02020 PF02868 Thermolysin metallopeptidase, alpha-helical domain BER92_RS02020 PF16485 Protealysin propeptide BER92_RS02035 PF01609 Transposase DDE domain BER92_RS02050 PF02803 Thiolase, C-terminal domain BER92_RS02050 PF00108 Thiolase, N-terminal domain BER92_RS02080 PF00581 Rhodanese-like domain BER92_RS02085 PF02556 Preprotein translocase subunit SecB BER92_RS02090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BER92_RS02090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BER92_RS02100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BER92_RS02100 PF00205 Thiamine pyrophosphate enzyme, central domain BER92_RS02100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BER92_RS02110 PF00588 SpoU rRNA Methylase family BER92_RS02120 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BER92_RS02120 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER92_RS02130 PF01527 Transposase BER92_RS02135 PF13276 HTH-like domain BER92_RS02135 PF00665 Integrase core domain BER92_RS02135 PF13333 Integrase core domain BER92_RS02150 PF08032 RNA 2'-O ribose methyltransferase substrate binding BER92_RS02150 PF00588 SpoU rRNA Methylase family BER92_RS02160 PF01474 Class-II DAHP synthetase family BER92_RS02180 PF03144 Elongation factor Tu domain 2 BER92_RS02180 PF00679 Elongation factor G C-terminus BER92_RS02180 PF00009 Elongation factor Tu GTP binding domain BER92_RS02185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BER92_RS02190 PF00056 lactate/malate dehydrogenase, NAD binding domain BER92_RS02190 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BER92_RS02205 PF02798 Glutathione S-transferase, N-terminal domain BER92_RS02205 PF00043 Glutathione S-transferase, C-terminal domain BER92_RS02215 PF05598 Transposase domain (DUF772) BER92_RS02215 PF01609 Transposase DDE domain BER92_RS02225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BER92_RS02225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER92_RS02230 PF08240 Alcohol dehydrogenase GroES-like domain BER92_RS02230 PF00107 Zinc-binding dehydrogenase BER92_RS02235 PF05736 OprF membrane domain BER92_RS02235 PF00691 OmpA family BER92_RS02245 PF00849 RNA pseudouridylate synthase BER92_RS02255 PF00155 Aminotransferase class I and II BER92_RS02265 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS02270 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS02275 PF17850 CysA C-terminal regulatory domain BER92_RS02275 PF00005 ABC transporter BER92_RS02275 PF12857 TOBE-like domain BER92_RS02285 PF08240 Alcohol dehydrogenase GroES-like domain BER92_RS02285 PF00107 Zinc-binding dehydrogenase BER92_RS02295 PF05506 Domain of unknown function (DUF756) BER92_RS02295 PF04185 Phosphoesterase family BER92_RS02300 PF00300 Histidine phosphatase superfamily (branch 1) BER92_RS02320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER92_RS02320 PF00128 Alpha amylase, catalytic domain BER92_RS02335 PF08443 RimK-like ATP-grasp domain BER92_RS02335 PF18030 RimK PreATP-grasp domain BER92_RS02345 PF00486 Transcriptional regulatory protein, C terminal BER92_RS02345 PF00072 Response regulator receiver domain BER92_RS02350 PF00989 PAS fold BER92_RS02350 PF11808 Phosphate regulon sensor protein PhoR BER92_RS02350 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS02350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS02370 PF00677 Lumazine binding domain BER92_RS02375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BER92_RS02375 PF00925 GTP cyclohydrolase II BER92_RS02380 PF00885 6,7-dimethyl-8-ribityllumazine synthase BER92_RS02385 PF01029 NusB family BER92_RS02390 PF02769 AIR synthase related protein, C-terminal domain BER92_RS02390 PF00586 AIR synthase related protein, N-terminal domain BER92_RS02400 PF03814 Potassium-transporting ATPase A subunit BER92_RS02425 PF04107 Glutamate-cysteine ligase family 2(GCS2) BER92_RS02430 PF01926 50S ribosome-binding GTPase BER92_RS02435 PF00034 Cytochrome c BER92_RS02445 PF01323 DSBA-like thioredoxin domain BER92_RS02455 PF00107 Zinc-binding dehydrogenase BER92_RS02455 PF08240 Alcohol dehydrogenase GroES-like domain BER92_RS02465 PF01609 Transposase DDE domain BER92_RS02490 PF07759 Protein of unknown function (DUF1615) BER92_RS02510 PF00324 Amino acid permease BER92_RS02520 PF01544 CorA-like Mg2+ transporter protein BER92_RS02540 PF01204 Trehalase BER92_RS02565 PF03707 Bacterial signalling protein N terminal repeat BER92_RS02565 PF00563 EAL domain BER92_RS02565 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS02580 PF00553 Cellulose binding domain BER92_RS02580 PF00150 Cellulase (glycosyl hydrolase family 5) BER92_RS02585 PF01740 STAS domain BER92_RS02585 PF00916 Sulfate permease family BER92_RS02595 PF13632 Glycosyl transferase family group 2 BER92_RS02610 PF04397 LytTr DNA-binding domain BER92_RS02610 PF00072 Response regulator receiver domain BER92_RS02615 PF03900 Porphobilinogen deaminase, C-terminal domain BER92_RS02615 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BER92_RS02640 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BER92_RS02640 PF00326 Prolyl oligopeptidase family BER92_RS02655 PF00155 Aminotransferase class I and II BER92_RS02660 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BER92_RS02660 PF00326 Prolyl oligopeptidase family BER92_RS02670 PF01678 Diaminopimelate epimerase BER92_RS02680 PF00589 Phage integrase family BER92_RS02680 PF02899 Phage integrase, N-terminal SAM-like domain BER92_RS02685 PF00227 Proteasome subunit BER92_RS02690 PF07724 AAA domain (Cdc48 subfamily) BER92_RS02690 PF00004 ATPase family associated with various cellular activities (AAA) BER92_RS02690 PF10431 C-terminal, D2-small domain, of ClpB protein BER92_RS02715 PF01209 ubiE/COQ5 methyltransferase family BER92_RS02720 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS02720 PF00563 EAL domain BER92_RS02720 PF03707 Bacterial signalling protein N terminal repeat BER92_RS02725 PF01433 Peptidase family M1 domain BER92_RS02740 PF00294 pfkB family carbohydrate kinase BER92_RS02750 PF04085 rod shape-determining protein MreC BER92_RS02760 PF00905 Penicillin binding protein transpeptidase domain BER92_RS02760 PF03717 Penicillin-binding Protein dimerisation domain BER92_RS02765 PF01098 Cell cycle protein BER92_RS02770 PF00295 Glycosyl hydrolases family 28 BER92_RS02775 PF13406 Transglycosylase SLT domain BER92_RS02780 PF03330 Lytic transglycolase BER92_RS02780 PF05036 Sporulation related domain BER92_RS02785 PF00768 D-alanyl-D-alanine carboxypeptidase BER92_RS02785 PF07943 Penicillin-binding protein 5, C-terminal domain BER92_RS02795 PF04359 Protein of unknown function (DUF493) BER92_RS02800 PF03099 Biotin/lipoate A/B protein ligase family BER92_RS02805 PF04055 Radical SAM superfamily BER92_RS02805 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BER92_RS02830 PF00595 PDZ domain BER92_RS02830 PF11818 C-terminal domain of tail specific protease (DUF3340) BER92_RS02830 PF17804 Tail specific protease N-terminal domain BER92_RS02830 PF03572 Peptidase family S41 BER92_RS02870 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BER92_RS02870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BER92_RS02875 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BER92_RS02875 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BER92_RS02880 PF04972 BON domain BER92_RS02885 PF08446 PAS fold BER92_RS02885 PF01590 GAF domain BER92_RS02885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS02885 PF00360 Phytochrome region BER92_RS02885 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS02890 PF00072 Response regulator receiver domain BER92_RS02895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS02895 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS02900 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BER92_RS02930 PF13276 HTH-like domain BER92_RS02930 PF00665 Integrase core domain BER92_RS02930 PF13333 Integrase core domain BER92_RS02935 PF01527 Transposase BER92_RS02945 PF01527 Transposase BER92_RS02950 PF00392 Bacterial regulatory proteins, gntR family BER92_RS02950 PF07702 UTRA domain BER92_RS02955 PF07690 Major Facilitator Superfamily BER92_RS02960 PF00356 Bacterial regulatory proteins, lacI family BER92_RS02965 PF01380 SIS domain BER92_RS02970 PF01979 Amidohydrolase family BER92_RS02980 PF02583 Metal-sensitive transcriptional repressor BER92_RS02985 PF08240 Alcohol dehydrogenase GroES-like domain BER92_RS02985 PF00107 Zinc-binding dehydrogenase BER92_RS02990 PF04828 Glutathione-dependent formaldehyde-activating enzyme BER92_RS02995 PF00756 Putative esterase BER92_RS03020 PF01979 Amidohydrolase family BER92_RS03030 PF05598 Transposase domain (DUF772) BER92_RS03060 PF05598 Transposase domain (DUF772) BER92_RS03065 PF01527 Transposase BER92_RS03075 PF00462 Glutaredoxin BER92_RS03080 PF01522 Polysaccharide deacetylase BER92_RS03095 PF00155 Aminotransferase class I and II BER92_RS03100 PF03412 Peptidase C39 family BER92_RS03100 PF00664 ABC transporter transmembrane region BER92_RS03100 PF00005 ABC transporter BER92_RS03120 PF02382 N-terminal domain in RTX protein BER92_RS03120 PF03497 Anthrax toxin LF subunit BER92_RS03120 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) BER92_RS03120 PF06594 Haemolysin-type calcium binding protein related domain BER92_RS03130 PF03193 RsgA GTPase BER92_RS03140 PF00128 Alpha amylase, catalytic domain BER92_RS03155 PF00356 Bacterial regulatory proteins, lacI family BER92_RS03160 PF00106 short chain dehydrogenase BER92_RS03165 PF03600 Citrate transporter BER92_RS03175 PF00072 Response regulator receiver domain BER92_RS03175 PF00486 Transcriptional regulatory protein, C terminal BER92_RS03180 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS03180 PF08521 Two-component sensor kinase N-terminal BER92_RS03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS03190 PF00072 Response regulator receiver domain BER92_RS03190 PF00196 Bacterial regulatory proteins, luxR family BER92_RS03200 PF01527 Transposase BER92_RS03215 PF01527 Transposase BER92_RS03225 PF02743 Cache domain BER92_RS03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS03225 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS03235 PF00375 Sodium:dicarboxylate symporter family BER92_RS03240 PF01515 Phosphate acetyl/butaryl transferase BER92_RS03240 PF03949 Malic enzyme, NAD binding domain BER92_RS03240 PF00390 Malic enzyme, N-terminal domain BER92_RS03265 PF03279 Bacterial lipid A biosynthesis acyltransferase BER92_RS03270 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BER92_RS03275 PF02321 Outer membrane efflux protein BER92_RS03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER92_RS03295 PF00330 Aconitase family (aconitate hydratase) BER92_RS03300 PF00694 Aconitase C-terminal domain BER92_RS03305 PF00180 Isocitrate/isopropylmalate dehydrogenase BER92_RS03310 PF07715 TonB-dependent Receptor Plug Domain BER92_RS03310 PF00593 TonB dependent receptor BER92_RS03315 PF05598 Transposase domain (DUF772) BER92_RS03320 PF08502 LeuA allosteric (dimerisation) domain BER92_RS03320 PF00682 HMGL-like BER92_RS03325 PF00291 Pyridoxal-phosphate dependent enzyme BER92_RS03335 PF00205 Thiamine pyrophosphate enzyme, central domain BER92_RS03335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BER92_RS03335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BER92_RS03340 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BER92_RS03340 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BER92_RS03360 PF01964 Radical SAM ThiC family BER92_RS03360 PF13667 ThiC-associated domain BER92_RS03370 PF05598 Transposase domain (DUF772) BER92_RS03370 PF01609 Transposase DDE domain BER92_RS03375 PF12833 Helix-turn-helix domain BER92_RS03380 PF00593 TonB dependent receptor BER92_RS03380 PF07715 TonB-dependent Receptor Plug Domain BER92_RS03390 PF00719 Inorganic pyrophosphatase BER92_RS03400 PF03030 Inorganic H+ pyrophosphatase BER92_RS03420 PF00365 Phosphofructokinase BER92_RS03430 PF08245 Mur ligase middle domain BER92_RS03430 PF01225 Mur ligase family, catalytic domain BER92_RS03430 PF02875 Mur ligase family, glutamate ligase domain BER92_RS03445 PF01569 PAP2 superfamily BER92_RS03465 PF01609 Transposase DDE domain BER92_RS03465 PF05598 Transposase domain (DUF772) BER92_RS03475 PF00202 Aminotransferase class-III BER92_RS03480 PF00202 Aminotransferase class-III BER92_RS03485 PF02581 Thiamine monophosphate synthase BER92_RS03490 PF00301 Rubredoxin BER92_RS03495 PF13369 Transglutaminase-like superfamily BER92_RS03505 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BER92_RS03515 PF01812 5-formyltetrahydrofolate cyclo-ligase family BER92_RS03525 PF05164 Cell division protein ZapA BER92_RS03535 PF03695 Uncharacterised protein family (UPF0149) BER92_RS03540 PF05195 Aminopeptidase P, N-terminal domain BER92_RS03540 PF00557 Metallopeptidase family M24 BER92_RS03545 PF00557 Metallopeptidase family M24 BER92_RS03560 PF06969 HemN C-terminal domain BER92_RS03560 PF04055 Radical SAM superfamily BER92_RS03565 PF01725 Ham1 family BER92_RS03570 PF03725 3' exoribonuclease family, domain 2 BER92_RS03570 PF01138 3' exoribonuclease family, domain 1 BER92_RS03575 PF08340 Domain of unknown function (DUF1732) BER92_RS03575 PF03755 YicC-like family, N-terminal region BER92_RS03580 PF00625 Guanylate kinase BER92_RS03585 PF01192 RNA polymerase Rpb6 BER92_RS03590 PF02824 TGS domain BER92_RS03590 PF04607 Region found in RelA / SpoT proteins BER92_RS03590 PF13291 ACT domain BER92_RS03595 PF01042 Endoribonuclease L-PSP BER92_RS03600 PF00271 Helicase conserved C-terminal domain BER92_RS03600 PF17191 RecG wedge domain BER92_RS03600 PF00270 DEAD/DEAH box helicase BER92_RS03610 PF01156 Inosine-uridine preferring nucleoside hydrolase BER92_RS03615 PF01197 Ribosomal protein L31 BER92_RS03620 PF00285 Citrate synthase, C-terminal domain BER92_RS03630 PF00905 Penicillin binding protein transpeptidase domain BER92_RS03630 PF00912 Transglycosylase BER92_RS03630 PF17092 Penicillin-binding protein OB-like domain BER92_RS03635 PF11104 Type IV pilus assembly protein PilM; BER92_RS03640 PF05137 Fimbrial assembly protein (PilN) BER92_RS03645 PF04350 Pilus assembly protein, PilO BER92_RS03650 PF04351 Pilus assembly protein, PilP BER92_RS03655 PF00263 Bacterial type II and III secretion system protein BER92_RS03655 PF07660 Secretin and TonB N terminus short domain BER92_RS03655 PF03958 Bacterial type II/III secretion system short domain BER92_RS03655 PF11741 AMIN domain BER92_RS03660 PF01609 Transposase DDE domain BER92_RS03660 PF05598 Transposase domain (DUF772) BER92_RS03690 PF01609 Transposase DDE domain BER92_RS03690 PF05598 Transposase domain (DUF772) BER92_RS03695 PF02021 Uncharacterised protein family UPF0102 BER92_RS03705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BER92_RS03735 PF02381 MraZ protein, putative antitoxin-like BER92_RS03740 PF01795 MraW methylase family BER92_RS03745 PF04999 Cell division protein FtsL BER92_RS03750 PF03717 Penicillin-binding Protein dimerisation domain BER92_RS03750 PF00905 Penicillin binding protein transpeptidase domain BER92_RS03755 PF08245 Mur ligase middle domain BER92_RS03755 PF01225 Mur ligase family, catalytic domain BER92_RS03755 PF02875 Mur ligase family, glutamate ligase domain BER92_RS03760 PF01225 Mur ligase family, catalytic domain BER92_RS03760 PF02875 Mur ligase family, glutamate ligase domain BER92_RS03760 PF08245 Mur ligase middle domain BER92_RS03765 PF00953 Glycosyl transferase family 4 BER92_RS03770 PF01098 Cell cycle protein BER92_RS03775 PF04101 Glycosyltransferase family 28 C-terminal domain BER92_RS03775 PF03033 Glycosyltransferase family 28 N-terminal domain BER92_RS03780 PF08245 Mur ligase middle domain BER92_RS03780 PF01225 Mur ligase family, catalytic domain BER92_RS03780 PF02875 Mur ligase family, glutamate ligase domain BER92_RS03785 PF01820 D-ala D-ala ligase N-terminus BER92_RS03785 PF07478 D-ala D-ala ligase C-terminus BER92_RS03790 PF03799 Cell division protein FtsQ BER92_RS03790 PF08478 POTRA domain, FtsQ-type BER92_RS03795 PF02491 SHS2 domain inserted in FTSA BER92_RS03800 PF12327 FtsZ family, C-terminal domain BER92_RS03800 PF00091 Tubulin/FtsZ family, GTPase domain BER92_RS03805 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BER92_RS03815 PF01551 Peptidase family M23 BER92_RS03815 PF01476 LysM domain BER92_RS03815 PF08525 Opacity-associated protein A N-terminal motif BER92_RS03820 PF01043 SecA preprotein cross-linking domain BER92_RS03820 PF07517 SecA DEAD-like domain BER92_RS03820 PF02810 SEC-C motif BER92_RS03820 PF07516 SecA Wing and Scaffold domain BER92_RS03830 PF00293 NUDIX domain BER92_RS03840 PF02219 Methylenetetrahydrofolate reductase BER92_RS03850 PF00550 Phosphopantetheine attachment site BER92_RS03850 PF08659 KR domain BER92_RS03850 PF00109 Beta-ketoacyl synthase, N-terminal domain BER92_RS03850 PF16197 Ketoacyl-synthetase C-terminal extension BER92_RS03850 PF00107 Zinc-binding dehydrogenase BER92_RS03850 PF08240 Alcohol dehydrogenase GroES-like domain BER92_RS03850 PF14765 Polyketide synthase dehydratase BER92_RS03850 PF02801 Beta-ketoacyl synthase, C-terminal domain BER92_RS03850 PF00698 Acyl transferase domain BER92_RS03870 PF05598 Transposase domain (DUF772) BER92_RS03875 PF01527 Transposase BER92_RS03885 PF01121 Dephospho-CoA kinase BER92_RS03890 PF06750 Bacterial Peptidase A24 N-terminal domain BER92_RS03890 PF01478 Type IV leader peptidase family BER92_RS03895 PF00482 Type II secretion system (T2SS), protein F BER92_RS03900 PF00114 Pilin (bacterial filament) BER92_RS03900 PF07963 Prokaryotic N-terminal methylation motif BER92_RS03905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BER92_RS03905 PF00437 Type II/IV secretion system protein BER92_RS03920 PF02661 Fic/DOC family BER92_RS03925 PF00158 Sigma-54 interaction domain BER92_RS03925 PF00072 Response regulator receiver domain BER92_RS03925 PF02954 Bacterial regulatory protein, Fis family BER92_RS03930 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS03930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS03935 PF00549 CoA-ligase BER92_RS03935 PF08442 ATP-grasp domain BER92_RS03940 PF02629 CoA binding domain BER92_RS03940 PF00549 CoA-ligase BER92_RS03945 PF02540 NAD synthase BER92_RS03945 PF00795 Carbon-nitrogen hydrolase BER92_RS03950 PF13525 Outer membrane lipoprotein BER92_RS03955 PF00849 RNA pseudouridylate synthase BER92_RS03960 PF02578 Multi-copper polyphenol oxidoreductase laccase BER92_RS03965 PF13360 PQQ-like domain BER92_RS03985 PF00982 Glycosyltransferase family 20 BER92_RS03990 PF00723 Glycosyl hydrolases family 15 BER92_RS03995 PF02358 Trehalose-phosphatase BER92_RS04000 PF07715 TonB-dependent Receptor Plug Domain BER92_RS04000 PF00593 TonB dependent receptor BER92_RS04030 PF01541 GIY-YIG catalytic domain BER92_RS04040 PF01527 Transposase BER92_RS04055 PF06508 Queuosine biosynthesis protein QueC BER92_RS04085 PF00271 Helicase conserved C-terminal domain BER92_RS04085 PF00570 HRDC domain BER92_RS04085 PF16124 RecQ zinc-binding BER92_RS04085 PF09382 RQC domain BER92_RS04085 PF00270 DEAD/DEAH box helicase BER92_RS04090 PF00210 Ferritin-like domain BER92_RS04095 PF04408 Helicase associated domain (HA2) BER92_RS04095 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BER92_RS04095 PF00271 Helicase conserved C-terminal domain BER92_RS04095 PF00270 DEAD/DEAH box helicase BER92_RS04095 PF11898 Domain of unknown function (DUF3418) BER92_RS04100 PF04055 Radical SAM superfamily BER92_RS04100 PF13186 Iron-sulfur cluster-binding domain BER92_RS04105 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BER92_RS04110 PF03070 TENA/THI-4/PQQC family BER92_RS04115 PF12706 Beta-lactamase superfamily domain BER92_RS04120 PF02824 TGS domain BER92_RS04120 PF04607 Region found in RelA / SpoT proteins BER92_RS04120 PF13291 ACT domain BER92_RS04135 PF14814 Bifunctional transglycosylase second domain BER92_RS04135 PF00905 Penicillin binding protein transpeptidase domain BER92_RS04135 PF00912 Transglycosylase BER92_RS04145 PF13307 Helicase C-terminal domain BER92_RS04145 PF04851 Type III restriction enzyme, res subunit BER92_RS04150 PF00814 Glycoprotease family BER92_RS04160 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BER92_RS04160 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BER92_RS04165 PF00072 Response regulator receiver domain BER92_RS04170 PF00072 Response regulator receiver domain BER92_RS04175 PF01584 CheW-like domain BER92_RS04180 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BER92_RS04180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER92_RS04185 PF00072 Response regulator receiver domain BER92_RS04185 PF01584 CheW-like domain BER92_RS04185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS04185 PF01627 Hpt domain BER92_RS04200 PF13302 Acetyltransferase (GNAT) domain BER92_RS04215 PF03932 CutC family BER92_RS04245 PF06715 Gp5 C-terminal repeat (3 copies) BER92_RS04245 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS04280 PF01527 Transposase BER92_RS04285 PF13276 HTH-like domain BER92_RS04285 PF13333 Integrase core domain BER92_RS04285 PF00665 Integrase core domain BER92_RS04290 PF10458 Valyl tRNA synthetase tRNA binding arm BER92_RS04290 PF08264 Anticodon-binding domain of tRNA BER92_RS04290 PF00133 tRNA synthetases class I (I, L, M and V) BER92_RS04300 PF00883 Cytosol aminopeptidase family, catalytic domain BER92_RS04300 PF02789 Cytosol aminopeptidase family, N-terminal domain BER92_RS04310 PF03739 Lipopolysaccharide export system permease LptF/LptG BER92_RS04325 PF02899 Phage integrase, N-terminal SAM-like domain BER92_RS04325 PF00589 Phage integrase family BER92_RS04330 PF13098 Thioredoxin-like domain BER92_RS04330 PF10411 Disulfide bond isomerase protein N-terminus BER92_RS04335 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BER92_RS04335 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BER92_RS04335 PF02769 AIR synthase related protein, C-terminal domain BER92_RS04345 PF05662 Coiled stalk of trimeric autotransporter adhesin BER92_RS04345 PF05658 Head domain of trimeric autotransporter adhesin BER92_RS04345 PF03895 YadA-like membrane anchor domain BER92_RS04345 PF13018 Extended Signal Peptide of Type V secretion system BER92_RS04350 PF00082 Subtilase family BER92_RS04350 PF04151 Bacterial pre-peptidase C-terminal domain BER92_RS04355 PF00437 Type II/IV secretion system protein BER92_RS04355 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BER92_RS04360 PF00482 Type II secretion system (T2SS), protein F BER92_RS04365 PF08334 Type II secretion system (T2SS), protein G BER92_RS04370 PF12019 Type II transport protein GspH BER92_RS04375 PF07963 Prokaryotic N-terminal methylation motif BER92_RS04385 PF03934 Type II secretion system (T2SS), protein K BER92_RS04390 PF05137 Fimbrial assembly protein (PilN) BER92_RS04395 PF10741 Type II secretion system (T2SS), protein M subtype b BER92_RS04405 PF00263 Bacterial type II and III secretion system protein BER92_RS04405 PF03958 Bacterial type II/III secretion system short domain BER92_RS04415 PF00392 Bacterial regulatory proteins, gntR family BER92_RS04415 PF07702 UTRA domain BER92_RS04425 PF07715 TonB-dependent Receptor Plug Domain BER92_RS04425 PF00593 TonB dependent receptor BER92_RS04445 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) BER92_RS04465 PF01327 Polypeptide deformylase BER92_RS04470 PF00005 ABC transporter BER92_RS04470 PF12848 ABC transporter BER92_RS04480 PF00464 Serine hydroxymethyltransferase BER92_RS04485 PF03477 ATP cone domain BER92_RS04495 PF01872 RibD C-terminal domain BER92_RS04495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BER92_RS04505 PF05598 Transposase domain (DUF772) BER92_RS04510 PF05598 Transposase domain (DUF772) BER92_RS04510 PF01609 Transposase DDE domain BER92_RS04515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BER92_RS04550 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BER92_RS04550 PF05221 S-adenosyl-L-homocysteine hydrolase BER92_RS04560 PF00311 Phosphoenolpyruvate carboxylase BER92_RS04580 PF00438 S-adenosylmethionine synthetase, N-terminal domain BER92_RS04580 PF02773 S-adenosylmethionine synthetase, C-terminal domain BER92_RS04580 PF02772 S-adenosylmethionine synthetase, central domain BER92_RS04590 PF13649 Methyltransferase domain BER92_RS04595 PF01207 Dihydrouridine synthase (Dus) BER92_RS04610 PF01219 Prokaryotic diacylglycerol kinase BER92_RS04620 PF08521 Two-component sensor kinase N-terminal BER92_RS04620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS04620 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS04625 PF00072 Response regulator receiver domain BER92_RS04625 PF00486 Transcriptional regulatory protein, C terminal BER92_RS04630 PF13472 GDSL-like Lipase/Acylhydrolase family BER92_RS04635 PF00005 ABC transporter BER92_RS04660 PF05598 Transposase domain (DUF772) BER92_RS04680 PF00248 Aldo/keto reductase family BER92_RS04685 PF07662 Na+ dependent nucleoside transporter C-terminus BER92_RS04685 PF07670 Nucleoside recognition BER92_RS04685 PF01773 Na+ dependent nucleoside transporter N-terminus BER92_RS04690 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BER92_RS04690 PF00294 pfkB family carbohydrate kinase BER92_RS04705 PF01790 Prolipoprotein diacylglyceryl transferase BER92_RS04710 PF00303 Thymidylate synthase BER92_RS04720 PF00186 Dihydrofolate reductase BER92_RS04725 PF00149 Calcineurin-like phosphoesterase BER92_RS04730 PF04379 ApaG domain BER92_RS04735 PF00398 Ribosomal RNA adenine dimethylase BER92_RS04740 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BER92_RS04745 PF00639 PPIC-type PPIASE domain BER92_RS04745 PF09312 SurA N-terminal domain BER92_RS04750 PF03968 OstA-like protein BER92_RS04750 PF04453 LPS transport system D BER92_RS04755 PF00850 Histone deacetylase domain BER92_RS04760 PF01923 Cobalamin adenosyltransferase BER92_RS04770 PF01494 FAD binding domain BER92_RS04775 PF01494 FAD binding domain BER92_RS04790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER92_RS04790 PF03466 LysR substrate binding domain BER92_RS04800 PF00378 Enoyl-CoA hydratase/isomerase BER92_RS04810 PF08450 SMP-30/Gluconolactonase/LRE-like region BER92_RS04815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BER92_RS04815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BER92_RS04820 PF18125 RlmM ferredoxin-like domain BER92_RS04820 PF01728 FtsJ-like methyltransferase BER92_RS04835 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BER92_RS04835 PF00749 tRNA synthetases class I (E and Q), catalytic domain BER92_RS04855 PF00072 Response regulator receiver domain BER92_RS04855 PF00196 Bacterial regulatory proteins, luxR family BER92_RS04860 PF01625 Peptide methionine sulfoxide reductase BER92_RS04865 PF00923 Transaldolase/Fructose-6-phosphate aldolase BER92_RS04870 PF01272 Transcription elongation factor, GreA/GreB, C-term BER92_RS04870 PF14760 Rnk N-terminus BER92_RS04875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER92_RS04875 PF03466 LysR substrate binding domain BER92_RS04880 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER92_RS04880 PF13192 Thioredoxin domain BER92_RS04885 PF00578 AhpC/TSA family BER92_RS04885 PF10417 C-terminal domain of 1-Cys peroxiredoxin BER92_RS04890 PF05175 Methyltransferase small domain BER92_RS04890 PF17827 PrmC N-terminal domain BER92_RS04895 PF00561 alpha/beta hydrolase fold BER92_RS04910 PF00293 NUDIX domain BER92_RS04915 PF01612 3'-5' exonuclease BER92_RS04915 PF01367 5'-3' exonuclease, C-terminal SAM fold BER92_RS04915 PF00476 DNA polymerase family A BER92_RS04915 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BER92_RS04940 PF04542 Sigma-70 region 2 BER92_RS04940 PF08281 Sigma-70, region 4 BER92_RS04955 PF01063 Amino-transferase class IV BER92_RS04970 PF00082 Subtilase family BER92_RS04970 PF04151 Bacterial pre-peptidase C-terminal domain BER92_RS04975 PF04073 Aminoacyl-tRNA editing domain BER92_RS04990 PF03358 NADPH-dependent FMN reductase BER92_RS04995 PF03631 Virulence factor BrkB BER92_RS05000 PF08534 Redoxin BER92_RS05010 PF03976 Polyphosphate kinase 2 (PPK2) BER92_RS05015 PF00994 Probable molybdopterin binding domain BER92_RS05025 PF00472 RF-1 domain BER92_RS05025 PF03462 PCRF domain BER92_RS05030 PF01488 Shikimate / quinate 5-dehydrogenase BER92_RS05030 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BER92_RS05030 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BER92_RS05040 PF03550 Outer membrane lipoprotein LolB BER92_RS05045 PF08544 GHMP kinases C terminal BER92_RS05045 PF00288 GHMP kinases N terminal domain BER92_RS05055 PF14572 Phosphoribosyl synthetase-associated domain BER92_RS05055 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BER92_RS05060 PF14693 Ribosomal protein TL5, C-terminal domain BER92_RS05060 PF01386 Ribosomal L25p family BER92_RS05065 PF01195 Peptidyl-tRNA hydrolase BER92_RS05070 PF01926 50S ribosome-binding GTPase BER92_RS05070 PF06071 Protein of unknown function (DUF933) BER92_RS05090 PF03144 Elongation factor Tu domain 2 BER92_RS05090 PF00009 Elongation factor Tu GTP binding domain BER92_RS05090 PF03143 Elongation factor Tu C-terminal domain BER92_RS05100 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BER92_RS05105 PF02357 Transcription termination factor nusG BER92_RS05105 PF00467 KOW motif BER92_RS05110 PF00298 Ribosomal protein L11, RNA binding domain BER92_RS05110 PF03946 Ribosomal protein L11, N-terminal domain BER92_RS05115 PF00687 Ribosomal protein L1p/L10e family BER92_RS05120 PF00466 Ribosomal protein L10 BER92_RS05125 PF16320 Ribosomal protein L7/L12 dimerisation domain BER92_RS05125 PF00542 Ribosomal protein L7/L12 C-terminal domain BER92_RS05130 PF04560 RNA polymerase Rpb2, domain 7 BER92_RS05130 PF00562 RNA polymerase Rpb2, domain 6 BER92_RS05130 PF04565 RNA polymerase Rpb2, domain 3 BER92_RS05130 PF04563 RNA polymerase beta subunit BER92_RS05130 PF04561 RNA polymerase Rpb2, domain 2 BER92_RS05130 PF10385 RNA polymerase beta subunit external 1 domain BER92_RS05135 PF00623 RNA polymerase Rpb1, domain 2 BER92_RS05135 PF04997 RNA polymerase Rpb1, domain 1 BER92_RS05135 PF04983 RNA polymerase Rpb1, domain 3 BER92_RS05135 PF05000 RNA polymerase Rpb1, domain 4 BER92_RS05135 PF04998 RNA polymerase Rpb1, domain 5 BER92_RS05140 PF00164 Ribosomal protein S12/S23 BER92_RS05145 PF00177 Ribosomal protein S7p/S5e BER92_RS05150 PF03144 Elongation factor Tu domain 2 BER92_RS05150 PF14492 Elongation Factor G, domain II BER92_RS05150 PF03764 Elongation factor G, domain IV BER92_RS05150 PF00679 Elongation factor G C-terminus BER92_RS05150 PF00009 Elongation factor Tu GTP binding domain BER92_RS05155 PF03144 Elongation factor Tu domain 2 BER92_RS05155 PF00009 Elongation factor Tu GTP binding domain BER92_RS05155 PF03143 Elongation factor Tu C-terminal domain BER92_RS05160 PF00338 Ribosomal protein S10p/S20e BER92_RS05165 PF00297 Ribosomal protein L3 BER92_RS05170 PF00573 Ribosomal protein L4/L1 family BER92_RS05175 PF00276 Ribosomal protein L23 BER92_RS05180 PF03947 Ribosomal Proteins L2, C-terminal domain BER92_RS05180 PF00181 Ribosomal Proteins L2, RNA binding domain BER92_RS05185 PF00203 Ribosomal protein S19 BER92_RS05190 PF00237 Ribosomal protein L22p/L17e BER92_RS05195 PF00189 Ribosomal protein S3, C-terminal domain BER92_RS05195 PF07650 KH domain BER92_RS05200 PF00252 Ribosomal protein L16p/L10e BER92_RS05205 PF00831 Ribosomal L29 protein BER92_RS05210 PF00366 Ribosomal protein S17 BER92_RS05215 PF00238 Ribosomal protein L14p/L23e BER92_RS05220 PF00467 KOW motif BER92_RS05220 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BER92_RS05225 PF00673 ribosomal L5P family C-terminus BER92_RS05225 PF00281 Ribosomal protein L5 BER92_RS05230 PF00253 Ribosomal protein S14p/S29e BER92_RS05235 PF00410 Ribosomal protein S8 BER92_RS05240 PF00347 Ribosomal protein L6 BER92_RS05245 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BER92_RS05250 PF00333 Ribosomal protein S5, N-terminal domain BER92_RS05250 PF03719 Ribosomal protein S5, C-terminal domain BER92_RS05255 PF00327 Ribosomal protein L30p/L7e BER92_RS05260 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BER92_RS05265 PF00344 SecY translocase BER92_RS05270 PF00416 Ribosomal protein S13/S18 BER92_RS05275 PF00411 Ribosomal protein S11 BER92_RS05280 PF01479 S4 domain BER92_RS05280 PF00163 Ribosomal protein S4/S9 N-terminal domain BER92_RS05285 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BER92_RS05285 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BER92_RS05285 PF01000 RNA polymerase Rpb3/RpoA insert domain BER92_RS05290 PF01196 Ribosomal protein L17 BER92_RS05295 PF02600 Disulfide bond formation protein DsbB BER92_RS05315 PF00135 Carboxylesterase family BER92_RS05340 PF01741 Large-conductance mechanosensitive channel, MscL BER92_RS05345 PF01557 Fumarylacetoacetate (FAA) hydrolase family BER92_RS05355 PF03600 Citrate transporter BER92_RS05355 PF02080 TrkA-C domain BER92_RS05360 PF02390 Putative methyltransferase BER92_RS05365 PF05690 Thiazole biosynthesis protein ThiG BER92_RS05385 PF13356 Arm DNA-binding domain BER92_RS05385 PF00589 Phage integrase family BER92_RS05385 PF14659 Phage integrase, N-terminal SAM-like domain BER92_RS05410 PF01381 Helix-turn-helix BER92_RS05430 PF13276 HTH-like domain BER92_RS05430 PF13333 Integrase core domain BER92_RS05430 PF00665 Integrase core domain BER92_RS05435 PF01527 Transposase BER92_RS05445 PF00563 EAL domain BER92_RS05445 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS05445 PF08447 PAS fold BER92_RS05445 PF08448 PAS fold BER92_RS05515 PF02534 Type IV secretory system Conjugative DNA transfer BER92_RS05540 PF00005 ABC transporter BER92_RS05540 PF03412 Peptidase C39 family BER92_RS05540 PF00664 ABC transporter transmembrane region BER92_RS05580 PF01527 Transposase BER92_RS05610 PF00440 Bacterial regulatory proteins, tetR family BER92_RS05610 PF13977 BetI-type transcriptional repressor, C-terminal BER92_RS05615 PF00300 Histidine phosphatase superfamily (branch 1) BER92_RS05615 PF13456 Reverse transcriptase-like BER92_RS05620 PF01256 Carbohydrate kinase BER92_RS05650 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER92_RS05670 PF04452 RNA methyltransferase BER92_RS05675 PF00202 Aminotransferase class-III BER92_RS05680 PF00293 NUDIX domain BER92_RS05685 PF00459 Inositol monophosphatase family BER92_RS05690 PF03819 MazG nucleotide pyrophosphohydrolase domain BER92_RS05695 PF08669 Glycine cleavage T-protein C-terminal barrel domain BER92_RS05695 PF01571 Aminomethyltransferase folate-binding domain BER92_RS05700 PF01597 Glycine cleavage H-protein BER92_RS05725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER92_RS05725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER92_RS05725 PF09317 Domain of unknown function (DUF1974) BER92_RS05735 PF00440 Bacterial regulatory proteins, tetR family BER92_RS05750 PF05598 Transposase domain (DUF772) BER92_RS05760 PF01609 Transposase DDE domain BER92_RS05770 PF01527 Transposase BER92_RS05780 PF01430 Hsp33 protein BER92_RS05785 PF00912 Transglycosylase BER92_RS05790 PF00535 Glycosyl transferase family 2 BER92_RS05795 PF00571 CBS domain BER92_RS05795 PF00478 IMP dehydrogenase / GMP reductase domain BER92_RS05800 PF05170 AsmA family BER92_RS05805 PF03006 Haemolysin-III related BER92_RS05810 PF16658 Class II release factor RF3, C-terminal domain BER92_RS05810 PF00009 Elongation factor Tu GTP binding domain BER92_RS05825 PF00561 alpha/beta hydrolase fold BER92_RS05830 PF01053 Cys/Met metabolism PLP-dependent enzyme BER92_RS05835 PF00696 Amino acid kinase family BER92_RS05835 PF00742 Homoserine dehydrogenase BER92_RS05835 PF03447 Homoserine dehydrogenase, NAD binding domain BER92_RS05840 PF12697 Alpha/beta hydrolase family BER92_RS05850 PF01053 Cys/Met metabolism PLP-dependent enzyme BER92_RS05875 PF04264 YceI-like domain BER92_RS05880 PF17149 Periplasmic sensor domain found in signal transduction proteins BER92_RS05880 PF00672 HAMP domain BER92_RS05880 PF00072 Response regulator receiver domain BER92_RS05880 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS05880 PF01627 Hpt domain BER92_RS05880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS05895 PF01263 Aldose 1-epimerase BER92_RS05900 PF01578 Cytochrome C assembly protein BER92_RS05905 PF00448 SRP54-type protein, GTPase domain BER92_RS05905 PF02978 Signal peptide binding domain BER92_RS05905 PF02881 SRP54-type protein, helical bundle domain BER92_RS05915 PF03060 Nitronate monooxygenase BER92_RS05925 PF00886 Ribosomal protein S16 BER92_RS05930 PF05239 PRC-barrel domain BER92_RS05930 PF01782 RimM N-terminal domain BER92_RS05935 PF01746 tRNA (Guanine-1)-methyltransferase BER92_RS05940 PF01245 Ribosomal protein L19 BER92_RS05945 PF01554 MatE BER92_RS05950 PF01479 S4 domain BER92_RS05955 PF05598 Transposase domain (DUF772) BER92_RS05980 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS05995 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BER92_RS05995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BER92_RS05995 PF03129 Anticodon binding domain BER92_RS05995 PF02824 TGS domain BER92_RS06000 PF05198 Translation initiation factor IF-3, N-terminal domain BER92_RS06000 PF00707 Translation initiation factor IF-3, C-terminal domain BER92_RS06005 PF01632 Ribosomal protein L35 BER92_RS06010 PF00453 Ribosomal protein L20 BER92_RS06015 PF01409 tRNA synthetases class II core domain (F) BER92_RS06015 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BER92_RS06020 PF03484 tRNA synthetase B5 domain BER92_RS06020 PF03147 Ferredoxin-fold anticodon binding domain BER92_RS06020 PF01588 Putative tRNA binding domain BER92_RS06020 PF03483 B3/4 domain BER92_RS06020 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BER92_RS06025 PF00216 Bacterial DNA-binding protein BER92_RS06030 PF13411 MerR HTH family regulatory protein BER92_RS06050 PF02397 Bacterial sugar transferase BER92_RS06070 PF13439 Glycosyltransferase Family 4 BER92_RS06070 PF00534 Glycosyl transferases group 1 BER92_RS06080 PF14667 Polysaccharide biosynthesis C-terminal domain BER92_RS06090 PF04230 Polysaccharide pyruvyl transferase BER92_RS06095 PF03808 Glycosyl transferase WecB/TagA/CpsF family BER92_RS06105 PF02779 Transketolase, pyrimidine binding domain BER92_RS06105 PF02780 Transketolase, C-terminal domain BER92_RS06105 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BER92_RS06120 PF12806 Acetyl-CoA dehydrogenase C-terminal like BER92_RS06120 PF02770 Acyl-CoA dehydrogenase, middle domain BER92_RS06120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER92_RS06120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER92_RS06130 PF08212 Lipocalin-like domain BER92_RS06160 PF05175 Methyltransferase small domain BER92_RS06160 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus BER92_RS06175 PF01527 Transposase BER92_RS06180 PF04362 Bacterial Fe(2+) trafficking BER92_RS06185 PF14815 NUDIX domain BER92_RS06185 PF00730 HhH-GPD superfamily base excision DNA repair protein BER92_RS06185 PF00633 Helix-hairpin-helix motif BER92_RS06190 PF00448 SRP54-type protein, GTPase domain BER92_RS06190 PF02881 SRP54-type protein, helical bundle domain BER92_RS06200 PF05544 Proline racemase BER92_RS06205 PF01266 FAD dependent oxidoreductase BER92_RS06215 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER92_RS06215 PF04324 BFD-like [2Fe-2S] binding domain BER92_RS06220 PF00701 Dihydrodipicolinate synthetase family BER92_RS06225 PF00171 Aldehyde dehydrogenase family BER92_RS06230 PF01321 Creatinase/Prolidase N-terminal domain BER92_RS06230 PF00557 Metallopeptidase family M24 BER92_RS06245 PF13520 Amino acid permease BER92_RS06270 PF05598 Transposase domain (DUF772) BER92_RS06270 PF01609 Transposase DDE domain BER92_RS06280 PF00082 Subtilase family BER92_RS06280 PF09286 Pro-kumamolisin, activation domain BER92_RS06290 PF07715 TonB-dependent Receptor Plug Domain BER92_RS06290 PF00593 TonB dependent receptor BER92_RS06310 PF07715 TonB-dependent Receptor Plug Domain BER92_RS06310 PF00593 TonB dependent receptor BER92_RS06330 PF13683 Integrase core domain BER92_RS06330 PF13276 HTH-like domain BER92_RS06335 PF01527 Transposase BER92_RS06340 PF05598 Transposase domain (DUF772) BER92_RS06350 PF03653 Uncharacterised protein family (UPF0093) BER92_RS06355 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BER92_RS06360 PF01336 OB-fold nucleic acid binding domain BER92_RS06360 PF07733 Bacterial DNA polymerase III alpha NTPase domain BER92_RS06360 PF14579 Helix-hairpin-helix motif BER92_RS06360 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BER92_RS06360 PF02811 PHP domain BER92_RS06365 PF01351 Ribonuclease HII BER92_RS06370 PF02684 Lipid-A-disaccharide synthetase BER92_RS06375 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BER92_RS06375 PF00132 Bacterial transferase hexapeptide (six repeats) BER92_RS06380 PF07977 FabA-like domain BER92_RS06385 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BER92_RS06385 PF00132 Bacterial transferase hexapeptide (six repeats) BER92_RS06395 PF07244 Surface antigen variable number repeat BER92_RS06395 PF01103 Surface antigen BER92_RS06400 PF02163 Peptidase family M50 BER92_RS06400 PF17820 PDZ domain BER92_RS06405 PF13288 DXP reductoisomerase C-terminal domain BER92_RS06405 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BER92_RS06405 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BER92_RS06415 PF01255 Putative undecaprenyl diphosphate synthase BER92_RS06420 PF01765 Ribosome recycling factor BER92_RS06425 PF00696 Amino acid kinase family BER92_RS06435 PF00889 Elongation factor TS BER92_RS06440 PF00318 Ribosomal protein S2 BER92_RS06475 PF00557 Metallopeptidase family M24 BER92_RS06480 PF01966 HD domain BER92_RS06480 PF01909 Nucleotidyltransferase domain BER92_RS06480 PF08335 GlnD PII-uridylyltransferase BER92_RS06485 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BER92_RS06485 PF00132 Bacterial transferase hexapeptide (six repeats) BER92_RS06485 PF14602 Hexapeptide repeat of succinyl-transferase BER92_RS06490 PF03960 ArsC family BER92_RS06495 PF01546 Peptidase family M20/M25/M40 BER92_RS06495 PF07687 Peptidase dimerisation domain BER92_RS06500 PF00733 Asparagine synthase BER92_RS06500 PF13537 Glutamine amidotransferase domain BER92_RS06510 PF00593 TonB dependent receptor BER92_RS06510 PF07715 TonB-dependent Receptor Plug Domain BER92_RS06515 PF01804 Penicillin amidase BER92_RS06525 PF00210 Ferritin-like domain BER92_RS06530 PF05724 Thiopurine S-methyltransferase (TPMT) BER92_RS06535 PF00521 DNA gyrase/topoisomerase IV, subunit A BER92_RS06535 PF03989 DNA gyrase C-terminal domain, beta-propeller BER92_RS06545 PF02321 Outer membrane efflux protein BER92_RS06550 PF00529 HlyD membrane-fusion protein of T1SS BER92_RS06550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BER92_RS06555 PF07690 Major Facilitator Superfamily BER92_RS06575 PF00854 POT family BER92_RS06610 PF00255 Glutathione peroxidase BER92_RS06620 PF00970 Oxidoreductase FAD-binding domain BER92_RS06620 PF00175 Oxidoreductase NAD-binding domain BER92_RS06625 PF00005 ABC transporter BER92_RS06630 PF05681 Fumarate hydratase (Fumerase) BER92_RS06630 PF05683 Fumarase C-terminus BER92_RS06635 PF00484 Carbonic anhydrase BER92_RS06655 PF00313 'Cold-shock' DNA-binding domain BER92_RS06670 PF00899 ThiF family BER92_RS06675 PF01026 TatD related DNase BER92_RS06695 PF00043 Glutathione S-transferase, C-terminal domain BER92_RS06695 PF02798 Glutathione S-transferase, N-terminal domain BER92_RS06700 PF00733 Asparagine synthase BER92_RS06700 PF13537 Glutamine amidotransferase domain BER92_RS06705 PF03358 NADPH-dependent FMN reductase BER92_RS06710 PF03796 DnaB-like helicase C terminal domain BER92_RS06710 PF00772 DnaB-like helicase N terminal domain BER92_RS06715 PF03441 FAD binding domain of DNA photolyase BER92_RS06715 PF00875 DNA photolyase BER92_RS06720 PF05736 OprF membrane domain BER92_RS06720 PF00691 OmpA family BER92_RS06730 PF13276 HTH-like domain BER92_RS06730 PF00665 Integrase core domain BER92_RS06730 PF13333 Integrase core domain BER92_RS06735 PF01527 Transposase BER92_RS06755 PF06114 IrrE N-terminal-like domain BER92_RS06755 PF01381 Helix-turn-helix BER92_RS06755 PF09856 Predicted transcriptional regulator (DUF2083) BER92_RS06760 PF00171 Aldehyde dehydrogenase family BER92_RS06765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER92_RS06765 PF02770 Acyl-CoA dehydrogenase, middle domain BER92_RS06765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER92_RS06770 PF00378 Enoyl-CoA hydratase/isomerase BER92_RS06775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BER92_RS06775 PF00378 Enoyl-CoA hydratase/isomerase BER92_RS06775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BER92_RS06780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BER92_RS06780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BER92_RS06785 PF01545 Cation efflux family BER92_RS06790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BER92_RS06790 PF00378 Enoyl-CoA hydratase/isomerase BER92_RS06790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BER92_RS06795 PF08281 Sigma-70, region 4 BER92_RS06795 PF04542 Sigma-70 region 2 BER92_RS06805 PF13180 PDZ domain BER92_RS06810 PF05598 Transposase domain (DUF772) BER92_RS06815 PF01609 Transposase DDE domain BER92_RS06815 PF05598 Transposase domain (DUF772) BER92_RS06825 PF01527 Transposase BER92_RS06830 PF00665 Integrase core domain BER92_RS06830 PF13333 Integrase core domain BER92_RS06830 PF13276 HTH-like domain BER92_RS06850 PF03471 Transporter associated domain BER92_RS06850 PF00571 CBS domain BER92_RS06860 PF02130 Uncharacterized protein family UPF0054 BER92_RS06865 PF02562 PhoH-like protein BER92_RS06870 PF00919 Uncharacterized protein family UPF0004 BER92_RS06870 PF01938 TRAM domain BER92_RS06870 PF04055 Radical SAM superfamily BER92_RS06875 PF01464 Transglycosylase SLT domain BER92_RS06880 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BER92_RS06880 PF00355 Rieske [2Fe-2S] domain BER92_RS06885 PF00033 Cytochrome b/b6/petB BER92_RS06885 PF00032 Cytochrome b(C-terminal)/b6/petD BER92_RS06890 PF02167 Cytochrome C1 family BER92_RS06895 PF02798 Glutathione S-transferase, N-terminal domain BER92_RS06895 PF00043 Glutathione S-transferase, C-terminal domain BER92_RS06900 PF04386 Stringent starvation protein B BER92_RS06910 PF00270 DEAD/DEAH box helicase BER92_RS06910 PF08494 DEAD/H associated BER92_RS06910 PF00271 Helicase conserved C-terminal domain BER92_RS06915 PF02245 Methylpurine-DNA glycosylase (MPG) BER92_RS06940 PF01612 3'-5' exonuclease BER92_RS06940 PF00570 HRDC domain BER92_RS06945 PF03781 Sulfatase-modifying factor enzyme 1 BER92_RS06960 PF00009 Elongation factor Tu GTP binding domain BER92_RS06960 PF03144 Elongation factor Tu domain 2 BER92_RS06960 PF00679 Elongation factor G C-terminus BER92_RS06960 PF06421 GTP-binding protein LepA C-terminus BER92_RS06965 PF10502 Signal peptidase, peptidase S26 BER92_RS06975 PF14622 Ribonuclease-III-like BER92_RS06975 PF00035 Double-stranded RNA binding motif BER92_RS06980 PF07650 KH domain BER92_RS06980 PF01926 50S ribosome-binding GTPase BER92_RS06985 PF11967 Recombination protein O N terminal BER92_RS06985 PF02565 Recombination protein O C terminal BER92_RS06995 PF05958 tRNA (Uracil-5-)-methyltransferase BER92_RS07000 PF01928 CYTH domain BER92_RS07005 PF01593 Flavin containing amine oxidoreductase BER92_RS07010 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BER92_RS07015 PF00933 Glycosyl hydrolase family 3 N terminal domain BER92_RS07020 PF00156 Phosphoribosyl transferase domain BER92_RS07025 PF01048 Phosphorylase superfamily BER92_RS07030 PF00313 'Cold-shock' DNA-binding domain BER92_RS07040 PF00271 Helicase conserved C-terminal domain BER92_RS07040 PF00270 DEAD/DEAH box helicase BER92_RS07040 PF08494 DEAD/H associated BER92_RS07045 PF04679 ATP dependent DNA ligase C terminal region BER92_RS07045 PF04675 DNA ligase N terminus BER92_RS07045 PF01068 ATP dependent DNA ligase domain BER92_RS07055 PF04679 ATP dependent DNA ligase C terminal region BER92_RS07055 PF04675 DNA ligase N terminus BER92_RS07055 PF01068 ATP dependent DNA ligase domain BER92_RS07085 PF00108 Thiolase, N-terminal domain BER92_RS07085 PF02803 Thiolase, C-terminal domain BER92_RS07090 PF01609 Transposase DDE domain BER92_RS07090 PF05598 Transposase domain (DUF772) BER92_RS07095 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BER92_RS07095 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BER92_RS07105 PF01863 Protein of unknown function DUF45 BER92_RS07115 PF07043 Protein of unknown function (DUF1328) BER92_RS07125 PF05872 Bacterial protein of unknown function (DUF853) BER92_RS07145 PF01416 tRNA pseudouridine synthase BER92_RS07150 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BER92_RS07155 PF13340 Putative transposase of IS4/5 family (DUF4096) BER92_RS07160 PF05598 Transposase domain (DUF772) BER92_RS07160 PF01609 Transposase DDE domain BER92_RS07170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER92_RS07170 PF03466 LysR substrate binding domain BER92_RS07175 PF00291 Pyridoxal-phosphate dependent enzyme BER92_RS07180 PF00290 Tryptophan synthase alpha chain BER92_RS07185 PF17848 Acetyl-coA carboxylase zinc finger domain BER92_RS07185 PF01039 Carboxyl transferase domain BER92_RS07190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BER92_RS07190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BER92_RS07190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BER92_RS07190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BER92_RS07205 PF03707 Bacterial signalling protein N terminal repeat BER92_RS07205 PF00563 EAL domain BER92_RS07205 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS07220 PF00106 short chain dehydrogenase BER92_RS07225 PF00121 Triosephosphate isomerase BER92_RS07240 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BER92_RS07245 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BER92_RS07250 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BER92_RS07255 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BER92_RS07265 PF10531 SLBB domain BER92_RS07265 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BER92_RS07265 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BER92_RS07270 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER92_RS07270 PF00384 Molybdopterin oxidoreductase BER92_RS07270 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BER92_RS07275 PF00146 NADH dehydrogenase BER92_RS07280 PF12838 4Fe-4S dicluster domain BER92_RS07285 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BER92_RS07290 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BER92_RS07295 PF00361 Proton-conducting membrane transporter BER92_RS07295 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BER92_RS07300 PF00361 Proton-conducting membrane transporter BER92_RS07300 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BER92_RS07305 PF00361 Proton-conducting membrane transporter BER92_RS07315 PF02576 RimP N-terminal domain BER92_RS07315 PF17384 RimP C-terminal SH3 domain BER92_RS07320 PF13184 NusA-like KH domain BER92_RS07320 PF08529 NusA N-terminal domain BER92_RS07320 PF00575 S1 RNA binding domain BER92_RS07325 PF00009 Elongation factor Tu GTP binding domain BER92_RS07325 PF11987 Translation-initiation factor 2 BER92_RS07325 PF08364 Bacterial translation initiation factor IF-2 associated region BER92_RS07325 PF04760 Translation initiation factor IF-2, N-terminal region BER92_RS07330 PF02033 Ribosome-binding factor A BER92_RS07335 PF01509 TruB family pseudouridylate synthase (N terminal domain) BER92_RS07335 PF16198 tRNA pseudouridylate synthase B C-terminal domain BER92_RS07335 PF09157 Pseudouridine synthase II TruB, C-terminal BER92_RS07340 PF00312 Ribosomal protein S15 BER92_RS07345 PF01138 3' exoribonuclease family, domain 1 BER92_RS07345 PF03725 3' exoribonuclease family, domain 2 BER92_RS07345 PF00575 S1 RNA binding domain BER92_RS07345 PF00013 KH domain BER92_RS07345 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BER92_RS07350 PF13340 Putative transposase of IS4/5 family (DUF4096) BER92_RS07355 PF01609 Transposase DDE domain BER92_RS07365 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BER92_RS07365 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BER92_RS07375 PF00731 AIR carboxylase BER92_RS07380 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BER92_RS07380 PF02222 ATP-grasp domain BER92_RS07385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BER92_RS07385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BER92_RS07390 PF00462 Glutaredoxin BER92_RS07400 PF01914 MarC family integral membrane protein BER92_RS07405 PF00593 TonB dependent receptor BER92_RS07410 PF03641 Possible lysine decarboxylase BER92_RS07410 PF11892 Domain of unknown function (DUF3412) BER92_RS07410 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BER92_RS07420 PF07694 5TMR of 5TMR-LYT BER92_RS07420 PF06580 Histidine kinase BER92_RS07425 PF07963 Prokaryotic N-terminal methylation motif BER92_RS07425 PF00114 Pilin (bacterial filament) BER92_RS07435 PF05567 Neisseria PilC beta-propeller domain BER92_RS07440 PF05598 Transposase domain (DUF772) BER92_RS07445 PF00072 Response regulator receiver domain BER92_RS07450 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS07450 PF00672 HAMP domain BER92_RS07450 PF01627 Hpt domain BER92_RS07450 PF00072 Response regulator receiver domain BER92_RS07450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS07450 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BER92_RS07455 PF04286 Protein of unknown function (DUF445) BER92_RS07460 PF00005 ABC transporter BER92_RS07470 PF07690 Major Facilitator Superfamily BER92_RS07475 PF02634 FdhD/NarQ family BER92_RS07480 PF00384 Molybdopterin oxidoreductase BER92_RS07495 PF01527 Transposase BER92_RS07500 PF13333 Integrase core domain BER92_RS07500 PF00665 Integrase core domain BER92_RS07500 PF13276 HTH-like domain BER92_RS07505 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS07505 PF00072 Response regulator receiver domain BER92_RS07510 PF01266 FAD dependent oxidoreductase BER92_RS07515 PF00120 Glutamine synthetase, catalytic domain BER92_RS07520 PF00120 Glutamine synthetase, catalytic domain BER92_RS07525 PF13416 Bacterial extracellular solute-binding protein BER92_RS07530 PF13533 Biotin-lipoyl like BER92_RS07535 PF07690 Major Facilitator Superfamily BER92_RS07540 PF02321 Outer membrane efflux protein BER92_RS07545 PF08402 TOBE domain BER92_RS07545 PF00005 ABC transporter BER92_RS07550 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS07555 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS07560 PF00171 Aldehyde dehydrogenase family BER92_RS07570 PF07536 HWE histidine kinase BER92_RS07570 PF13581 Histidine kinase-like ATPase domain BER92_RS07570 PF13426 PAS domain BER92_RS07575 PF00873 AcrB/AcrD/AcrF family BER92_RS07580 PF00529 HlyD membrane-fusion protein of T1SS BER92_RS07580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BER92_RS07590 PF05088 Bacterial NAD-glutamate dehydrogenase BER92_RS07615 PF05819 NolX protein BER92_RS07630 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH BER92_RS07655 PF01654 Cytochrome bd terminal oxidase subunit I BER92_RS07665 PF05598 Transposase domain (DUF772) BER92_RS07665 PF01609 Transposase DDE domain BER92_RS07670 PF01527 Transposase BER92_RS07675 PF13276 HTH-like domain BER92_RS07675 PF13333 Integrase core domain BER92_RS07675 PF00665 Integrase core domain BER92_RS07680 PF13276 HTH-like domain BER92_RS07680 PF00665 Integrase core domain BER92_RS07680 PF13333 Integrase core domain BER92_RS07690 PF17757 UvrB interaction domain BER92_RS07690 PF00271 Helicase conserved C-terminal domain BER92_RS07690 PF02151 UvrB/uvrC motif BER92_RS07690 PF04851 Type III restriction enzyme, res subunit BER92_RS07690 PF12344 Ultra-violet resistance protein B BER92_RS07720 PF03743 Bacterial conjugation TrbI-like protein BER92_RS07725 PF00437 Type II/IV secretion system protein BER92_RS07730 PF01464 Transglycosylase SLT domain BER92_RS07740 PF05101 Type IV secretory pathway, VirB3-like protein BER92_RS07745 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BER92_RS07760 PF05598 Transposase domain (DUF772) BER92_RS07760 PF01609 Transposase DDE domain BER92_RS07770 PF05598 Transposase domain (DUF772) BER92_RS07770 PF01609 Transposase DDE domain BER92_RS07785 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BER92_RS07810 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BER92_RS07845 PF01609 Transposase DDE domain BER92_RS07845 PF05598 Transposase domain (DUF772) BER92_RS07930 PF01668 SmpB protein BER92_RS07940 PF03658 RnfH family Ubiquitin BER92_RS07945 PF04355 SmpA / OmlA family BER92_RS07950 PF01475 Ferric uptake regulator family BER92_RS07955 PF02463 RecF/RecN/SMC N terminal domain BER92_RS07960 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BER92_RS07960 PF01628 HrcA protein C terminal domain BER92_RS07965 PF01025 GrpE BER92_RS07970 PF00012 Hsp70 protein BER92_RS07975 PF00226 DnaJ domain BER92_RS07975 PF01556 DnaJ C terminal domain BER92_RS07975 PF00684 DnaJ central domain BER92_RS07980 PF08543 Phosphomethylpyrimidine kinase BER92_RS07985 PF02153 Prephenate dehydrogenase BER92_RS07985 PF01817 Chorismate mutase type II BER92_RS08005 PF00664 ABC transporter transmembrane region BER92_RS08005 PF00005 ABC transporter BER92_RS08005 PF03412 Peptidase C39 family BER92_RS08020 PF00664 ABC transporter transmembrane region BER92_RS08020 PF00005 ABC transporter BER92_RS08030 PF03641 Possible lysine decarboxylase BER92_RS08035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER92_RS08035 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER92_RS08040 PF02817 e3 binding domain BER92_RS08040 PF00364 Biotin-requiring enzyme BER92_RS08040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BER92_RS08045 PF16870 2-oxoglutarate dehydrogenase C-terminal BER92_RS08045 PF16078 2-oxoglutarate dehydrogenase N-terminus BER92_RS08045 PF00676 Dehydrogenase E1 component BER92_RS08045 PF02779 Transketolase, pyrimidine binding domain BER92_RS08055 PF08007 Cupin superfamily protein BER92_RS08060 PF08328 Adenylosuccinate lyase C-terminal BER92_RS08060 PF00206 Lyase BER92_RS08065 PF10415 Fumarase C C-terminus BER92_RS08065 PF00206 Lyase BER92_RS08070 PF01609 Transposase DDE domain BER92_RS08070 PF05598 Transposase domain (DUF772) BER92_RS08075 PF01527 Transposase BER92_RS08080 PF13276 HTH-like domain BER92_RS08080 PF00665 Integrase core domain BER92_RS08080 PF13333 Integrase core domain BER92_RS08085 PF13276 HTH-like domain BER92_RS08085 PF00665 Integrase core domain BER92_RS08085 PF13333 Integrase core domain BER92_RS08090 PF05598 Transposase domain (DUF772) BER92_RS08090 PF01609 Transposase DDE domain BER92_RS08100 PF13340 Putative transposase of IS4/5 family (DUF4096) BER92_RS08105 PF01609 Transposase DDE domain BER92_RS08115 PF00005 ABC transporter BER92_RS08120 PF00392 Bacterial regulatory proteins, gntR family BER92_RS08130 PF00255 Glutathione peroxidase BER92_RS08135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER92_RS08135 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BER92_RS08140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BER92_RS08140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BER92_RS08140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BER92_RS08145 PF04102 SlyX BER92_RS08160 PF00356 Bacterial regulatory proteins, lacI family BER92_RS08165 PF07690 Major Facilitator Superfamily BER92_RS08170 PF00294 pfkB family carbohydrate kinase BER92_RS08180 PF02607 B12 binding domain BER92_RS08180 PF02310 B12 binding domain BER92_RS08180 PF02574 Homocysteine S-methyltransferase BER92_RS08180 PF00809 Pterin binding enzyme BER92_RS08180 PF02965 Vitamin B12 dependent methionine synthase, activation domain BER92_RS08185 PF00809 Pterin binding enzyme BER92_RS08185 PF02574 Homocysteine S-methyltransferase BER92_RS08190 PF01209 ubiE/COQ5 methyltransferase family BER92_RS08195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER92_RS08195 PF02770 Acyl-CoA dehydrogenase, middle domain BER92_RS08195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER92_RS08210 PF08461 Ribonuclease R winged-helix domain BER92_RS08210 PF08206 Ribonuclease B OB domain BER92_RS08210 PF00575 S1 RNA binding domain BER92_RS08210 PF00773 RNB domain BER92_RS08210 PF17876 Cold shock domain BER92_RS08215 PF00588 SpoU rRNA Methylase family BER92_RS08215 PF08032 RNA 2'-O ribose methyltransferase substrate binding BER92_RS08230 PF00929 Exonuclease BER92_RS08235 PF01895 PhoU domain BER92_RS08240 PF00005 ABC transporter BER92_RS08245 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS08250 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS08255 PF12849 PBP superfamily domain BER92_RS08265 PF12849 PBP superfamily domain BER92_RS08285 PF00484 Carbonic anhydrase BER92_RS08290 PF01740 STAS domain BER92_RS08290 PF00916 Sulfate permease family BER92_RS08295 PF00633 Helix-hairpin-helix motif BER92_RS08295 PF00730 HhH-GPD superfamily base excision DNA repair protein BER92_RS08295 PF10576 Iron-sulfur binding domain of endonuclease III BER92_RS08310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER92_RS08310 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BER92_RS08315 PF00293 NUDIX domain BER92_RS08320 PF00581 Rhodanese-like domain BER92_RS08355 PF01170 Putative RNA methylase family UPF0020 BER92_RS08355 PF02926 THUMP domain BER92_RS08355 PF10672 S-adenosylmethionine-dependent methyltransferase BER92_RS08360 PF01513 ATP-NAD kinase BER92_RS08370 PF05598 Transposase domain (DUF772) BER92_RS08370 PF01609 Transposase DDE domain BER92_RS08385 PF08411 Exonuclease C-terminal BER92_RS08385 PF00929 Exonuclease BER92_RS08390 PF01494 FAD binding domain BER92_RS08395 PF00266 Aminotransferase class-V BER92_RS08405 PF06052 3-hydroxyanthranilic acid dioxygenase BER92_RS08410 PF00484 Carbonic anhydrase BER92_RS08415 PF04299 Putative FMN-binding domain BER92_RS08435 PF00152 tRNA synthetases class II (D, K and N) BER92_RS08435 PF01336 OB-fold nucleic acid binding domain BER92_RS08440 PF01521 Iron-sulphur cluster biosynthesis BER92_RS08445 PF01250 Ribosomal protein S6 BER92_RS08450 PF01084 Ribosomal protein S18 BER92_RS08455 PF01281 Ribosomal protein L9, N-terminal domain BER92_RS08455 PF03948 Ribosomal protein L9, C-terminal domain BER92_RS08460 PF02463 RecF/RecN/SMC N terminal domain BER92_RS08465 PF04354 ZipA, C-terminal FtsZ-binding domain BER92_RS08470 PF03120 NAD-dependent DNA ligase OB-fold domain BER92_RS08470 PF01653 NAD-dependent DNA ligase adenylation domain BER92_RS08470 PF00533 BRCA1 C Terminus (BRCT) domain BER92_RS08470 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BER92_RS08470 PF12826 Helix-hairpin-helix motif BER92_RS08475 PF00152 tRNA synthetases class II (D, K and N) BER92_RS08490 PF01008 Initiation factor 2 subunit family BER92_RS08495 PF00521 DNA gyrase/topoisomerase IV, subunit A BER92_RS08495 PF03989 DNA gyrase C-terminal domain, beta-propeller BER92_RS08510 PF17391 Urocanase N-terminal domain BER92_RS08510 PF01175 Urocanase Rossmann-like domain BER92_RS08510 PF17392 Urocanase C-terminal domain BER92_RS08520 PF00221 Aromatic amino acid lyase BER92_RS08525 PF07969 Amidohydrolase family BER92_RS08555 PF01794 Ferric reductase like transmembrane component BER92_RS08560 PF02666 Phosphatidylserine decarboxylase BER92_RS08565 PF02630 SCO1/SenC BER92_RS08570 PF05175 Methyltransferase small domain BER92_RS08580 PF01264 Chorismate synthase BER92_RS08585 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER92_RS08585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BER92_RS08590 PF01118 Semialdehyde dehydrogenase, NAD binding domain BER92_RS08590 PF02774 Semialdehyde dehydrogenase, dimerisation domain BER92_RS08600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER92_RS08600 PF00672 HAMP domain BER92_RS08600 PF02203 Tar ligand binding domain homologue BER92_RS08605 PF06745 KaiC BER92_RS08610 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS08610 PF00072 Response regulator receiver domain BER92_RS08610 PF08448 PAS fold BER92_RS08610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS08610 PF13188 PAS domain BER92_RS08615 PF01527 Transposase BER92_RS08635 PF03918 Cytochrome C biogenesis protein BER92_RS08640 PF01578 Cytochrome C assembly protein BER92_RS08640 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BER92_RS08645 PF01578 Cytochrome C assembly protein BER92_RS08650 PF00082 Subtilase family BER92_RS08660 PF08281 Sigma-70, region 4 BER92_RS08660 PF04542 Sigma-70 region 2 BER92_RS08685 PF00083 Sugar (and other) transporter BER92_RS08690 PF00296 Luciferase-like monooxygenase BER92_RS08700 PF03471 Transporter associated domain BER92_RS08700 PF00571 CBS domain BER92_RS08700 PF01595 Cyclin M transmembrane N-terminal domain BER92_RS08710 PF01384 Phosphate transporter family BER92_RS08715 PF02698 DUF218 domain BER92_RS08725 PF01751 Toprim domain BER92_RS08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS08725 PF00986 DNA gyrase B subunit, carboxyl terminus BER92_RS08725 PF00204 DNA gyrase B BER92_RS08735 PF00117 Glutamine amidotransferase class-I BER92_RS08735 PF06418 CTP synthase N-terminus BER92_RS08740 PF00793 DAHP synthetase I family BER92_RS08745 PF03952 Enolase, N-terminal domain BER92_RS08745 PF00113 Enolase, C-terminal TIM barrel domain BER92_RS08750 PF04977 Septum formation initiator BER92_RS08755 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BER92_RS08760 PF02542 YgbB family BER92_RS08765 PF01142 tRNA pseudouridine synthase D (TruD) BER92_RS08770 PF01713 Smr domain BER92_RS08775 PF01975 Survival protein SurE BER92_RS08785 PF09335 SNARE associated Golgi protein BER92_RS08790 PF01551 Peptidase family M23 BER92_RS08790 PF01476 LysM domain BER92_RS08825 PF05598 Transposase domain (DUF772) BER92_RS08835 PF00561 alpha/beta hydrolase fold BER92_RS08840 PF05598 Transposase domain (DUF772) BER92_RS08850 PF03918 Cytochrome C biogenesis protein BER92_RS08855 PF08534 Redoxin BER92_RS08860 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BER92_RS08860 PF01578 Cytochrome C assembly protein BER92_RS08865 PF03100 CcmE BER92_RS08875 PF01578 Cytochrome C assembly protein BER92_RS08880 PF03379 CcmB protein BER92_RS08885 PF00005 ABC transporter BER92_RS08890 PF00155 Aminotransferase class I and II BER92_RS08895 PF00795 Carbon-nitrogen hydrolase BER92_RS08910 PF00849 RNA pseudouridylate synthase BER92_RS08910 PF01479 S4 domain BER92_RS08915 PF04079 Segregation and condensation complex subunit ScpB BER92_RS08920 PF02616 Segregation and condensation protein ScpA BER92_RS08925 PF03795 YCII-related domain BER92_RS08935 PF00356 Bacterial regulatory proteins, lacI family BER92_RS08955 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS08960 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS08975 PF05598 Transposase domain (DUF772) BER92_RS08990 PF00795 Carbon-nitrogen hydrolase BER92_RS08995 PF04371 Porphyromonas-type peptidyl-arginine deiminase BER92_RS09005 PF02224 Cytidylate kinase BER92_RS09010 PF00575 S1 RNA binding domain BER92_RS09015 PF00216 Bacterial DNA-binding protein BER92_RS09025 PF18073 Rubredoxin metal binding domain BER92_RS09030 PF00953 Glycosyl transferase family 4 BER92_RS09035 PF02719 Polysaccharide biosynthesis protein BER92_RS09040 PF00483 Nucleotidyl transferase BER92_RS09045 PF00999 Sodium/hydrogen exchanger family BER92_RS09045 PF02254 TrkA-N domain BER92_RS09050 PF01527 Transposase BER92_RS09055 PF13276 HTH-like domain BER92_RS09065 PF05598 Transposase domain (DUF772) BER92_RS09080 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BER92_RS09080 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BER92_RS09085 PF00478 IMP dehydrogenase / GMP reductase domain BER92_RS09085 PF00571 CBS domain BER92_RS09090 PF00958 GMP synthase C terminal domain BER92_RS09090 PF02540 NAD synthase BER92_RS09090 PF00117 Glutamine amidotransferase class-I BER92_RS09095 PF00589 Phage integrase family BER92_RS09095 PF13356 Arm DNA-binding domain BER92_RS09105 PF05598 Transposase domain (DUF772) BER92_RS09130 PF17273 Family of unknown function (DUF5338) BER92_RS09140 PF01850 PIN domain BER92_RS09150 PF01527 Transposase BER92_RS09155 PF05598 Transposase domain (DUF772) BER92_RS09160 PF13276 HTH-like domain BER92_RS09160 PF13333 Integrase core domain BER92_RS09160 PF00665 Integrase core domain BER92_RS09185 PF05598 Transposase domain (DUF772) BER92_RS09190 PF13393 Histidyl-tRNA synthetase BER92_RS09190 PF03129 Anticodon binding domain BER92_RS09200 PF08029 HisG, C-terminal domain BER92_RS09200 PF01634 ATP phosphoribosyltransferase BER92_RS09205 PF00815 Histidinol dehydrogenase BER92_RS09210 PF00155 Aminotransferase class I and II BER92_RS09215 PF00475 Imidazoleglycerol-phosphate dehydratase BER92_RS09220 PF00117 Glutamine amidotransferase class-I BER92_RS09225 PF00977 Histidine biosynthesis protein BER92_RS09230 PF00977 Histidine biosynthesis protein BER92_RS09235 PF01502 Phosphoribosyl-AMP cyclohydrolase BER92_RS09235 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BER92_RS09265 PF03079 ARD/ARD' family BER92_RS09270 PF00596 Class II Aldolase and Adducin N-terminal domain BER92_RS09275 PF13520 Amino acid permease BER92_RS09280 PF13520 Amino acid permease BER92_RS09290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BER92_RS09290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER92_RS09295 PF01565 FAD binding domain BER92_RS09295 PF02913 FAD linked oxidases, C-terminal domain BER92_RS09310 PF09285 Elongation factor P, C-terminal BER92_RS09310 PF08207 Elongation factor P (EF-P) KOW-like domain BER92_RS09310 PF01132 Elongation factor P (EF-P) OB domain BER92_RS09315 PF00106 short chain dehydrogenase BER92_RS09320 PF00682 HMGL-like BER92_RS09325 PF00378 Enoyl-CoA hydratase/isomerase BER92_RS09335 PF02421 Ferrous iron transport protein B BER92_RS09335 PF07670 Nucleoside recognition BER92_RS09335 PF07664 Ferrous iron transport protein B C terminus BER92_RS09355 PF05173 Dihydrodipicolinate reductase, C-terminus BER92_RS09355 PF01113 Dihydrodipicolinate reductase, N-terminus BER92_RS09360 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BER92_RS09360 PF00117 Glutamine amidotransferase class-I BER92_RS09375 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BER92_RS09375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BER92_RS09375 PF02142 MGS-like domain BER92_RS09380 PF03449 Transcription elongation factor, N-terminal BER92_RS09380 PF01272 Transcription elongation factor, GreA/GreB, C-term BER92_RS09390 PF17768 RecJ OB domain BER92_RS09390 PF02272 DHHA1 domain BER92_RS09390 PF01368 DHH family BER92_RS09395 PF03462 PCRF domain BER92_RS09395 PF00472 RF-1 domain BER92_RS09400 PF00152 tRNA synthetases class II (D, K and N) BER92_RS09400 PF01336 OB-fold nucleic acid binding domain BER92_RS09405 PF00072 Response regulator receiver domain BER92_RS09415 PF00072 Response regulator receiver domain BER92_RS09415 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS09415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS09415 PF01627 Hpt domain BER92_RS09420 PF00378 Enoyl-CoA hydratase/isomerase BER92_RS09425 PF13193 AMP-binding enzyme C-terminal domain BER92_RS09425 PF00501 AMP-binding enzyme BER92_RS09435 PF00694 Aconitase C-terminal domain BER92_RS09435 PF00330 Aconitase family (aconitate hydratase) BER92_RS09450 PF11791 Aconitate B N-terminal domain BER92_RS09450 PF06434 Aconitate hydratase 2 N-terminus BER92_RS09450 PF00330 Aconitase family (aconitate hydratase) BER92_RS09455 PF00561 alpha/beta hydrolase fold BER92_RS09460 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS09460 PF03707 Bacterial signalling protein N terminal repeat BER92_RS09460 PF00563 EAL domain BER92_RS09465 PF01339 CheB methylesterase BER92_RS09465 PF00072 Response regulator receiver domain BER92_RS09470 PF03975 CheD chemotactic sensory transduction BER92_RS09475 PF01739 CheR methyltransferase, SAM binding domain BER92_RS09475 PF03705 CheR methyltransferase, all-alpha domain BER92_RS09485 PF01584 CheW-like domain BER92_RS09495 PF00672 HAMP domain BER92_RS09495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER92_RS09495 PF02203 Tar ligand binding domain homologue BER92_RS09505 PF02203 Tar ligand binding domain homologue BER92_RS09505 PF00672 HAMP domain BER92_RS09505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER92_RS09510 PF00672 HAMP domain BER92_RS09510 PF02203 Tar ligand binding domain homologue BER92_RS09510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER92_RS09520 PF02203 Tar ligand binding domain homologue BER92_RS09520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER92_RS09520 PF00672 HAMP domain BER92_RS09540 PF01584 CheW-like domain BER92_RS09540 PF09078 CheY binding BER92_RS09540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS09540 PF01627 Hpt domain BER92_RS09540 PF02895 Signal transducing histidine kinase, homodimeric domain BER92_RS09545 PF00072 Response regulator receiver domain BER92_RS09555 PF01584 CheW-like domain BER92_RS09560 PF13614 AAA domain BER92_RS09565 PF00691 OmpA family BER92_RS09565 PF13677 Membrane MotB of proton-channel complex MotA/MotB BER92_RS09570 PF01618 MotA/TolQ/ExbB proton channel family BER92_RS09575 PF05598 Transposase domain (DUF772) BER92_RS09680 PF01106 NifU-like domain BER92_RS09685 PF01329 Pterin 4 alpha carbinolamine dehydratase BER92_RS09695 PF01527 Transposase BER92_RS09705 PF02535 ZIP Zinc transporter BER92_RS09720 PF00849 RNA pseudouridylate synthase BER92_RS09720 PF01479 S4 domain BER92_RS09725 PF00575 S1 RNA binding domain BER92_RS09725 PF10150 Ribonuclease E/G family BER92_RS09725 PF12111 Polyribonucleotide phosphorylase C terminal BER92_RS09735 PF00196 Bacterial regulatory proteins, luxR family BER92_RS09735 PF00072 Response regulator receiver domain BER92_RS09740 PF17773 UPF0176 acylphosphatase like domain BER92_RS09740 PF00581 Rhodanese-like domain BER92_RS09750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER92_RS09760 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BER92_RS09760 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BER92_RS09760 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BER92_RS09770 PF01609 Transposase DDE domain BER92_RS09770 PF05598 Transposase domain (DUF772) BER92_RS09780 PF01527 Transposase BER92_RS09785 PF13276 HTH-like domain BER92_RS09785 PF00665 Integrase core domain BER92_RS09785 PF13333 Integrase core domain BER92_RS09790 PF13333 Integrase core domain BER92_RS09790 PF00665 Integrase core domain BER92_RS09790 PF13276 HTH-like domain BER92_RS09820 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS09830 PF00004 ATPase family associated with various cellular activities (AAA) BER92_RS09830 PF17871 AAA lid domain BER92_RS09830 PF10431 C-terminal, D2-small domain, of ClpB protein BER92_RS09830 PF07724 AAA domain (Cdc48 subfamily) BER92_RS09840 PF05947 Type VI secretion system, TssF BER92_RS09855 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath BER92_RS09860 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 BER92_RS09885 PF13296 Putative type VI secretion system Rhs element Vgr BER92_RS09885 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BER92_RS09885 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS09910 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS09910 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BER92_RS09910 PF13296 Putative type VI secretion system Rhs element Vgr BER92_RS09950 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BER92_RS09950 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS09950 PF13296 Putative type VI secretion system Rhs element Vgr BER92_RS09955 PF01527 Transposase BER92_RS09975 PF12951 Passenger-associated-transport-repeat BER92_RS09975 PF12951 Passenger-associated-transport-repeat BER92_RS09995 PF05974 Domain of unknown function (DUF892) BER92_RS10010 PF01609 Transposase DDE domain BER92_RS10010 PF05598 Transposase domain (DUF772) BER92_RS10020 PF10414 Sirohaem synthase dimerisation region BER92_RS10020 PF14824 Sirohaem biosynthesis protein central BER92_RS10020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BER92_RS10030 PF12804 MobA-like NTP transferase domain BER92_RS10035 PF03454 MoeA C-terminal region (domain IV) BER92_RS10035 PF00994 Probable molybdopterin binding domain BER92_RS10035 PF03453 MoeA N-terminal region (domain I and II) BER92_RS10055 PF00899 ThiF family BER92_RS10060 PF03453 MoeA N-terminal region (domain I and II) BER92_RS10060 PF00994 Probable molybdopterin binding domain BER92_RS10060 PF03454 MoeA C-terminal region (domain IV) BER92_RS10065 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BER92_RS10065 PF01926 50S ribosome-binding GTPase BER92_RS10070 PF01011 PQQ enzyme repeat BER92_RS10070 PF13360 PQQ-like domain BER92_RS10090 PF04055 Radical SAM superfamily BER92_RS10095 PF00334 Nucleoside diphosphate kinase BER92_RS10105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BER92_RS10105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BER92_RS10105 PF00378 Enoyl-CoA hydratase/isomerase BER92_RS10110 PF02803 Thiolase, C-terminal domain BER92_RS10110 PF00108 Thiolase, N-terminal domain BER92_RS10115 PF00654 Voltage gated chloride channel BER92_RS10120 PF05598 Transposase domain (DUF772) BER92_RS10125 PF00004 ATPase family associated with various cellular activities (AAA) BER92_RS10125 PF12002 MgsA AAA+ ATPase C terminal BER92_RS10125 PF16193 AAA C-terminal domain BER92_RS10130 PF03548 Outer membrane lipoprotein carrier protein LolA BER92_RS10140 PF01580 FtsK/SpoIIIE family BER92_RS10140 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BER92_RS10140 PF17854 FtsK alpha domain BER92_RS10140 PF09397 Ftsk gamma domain BER92_RS10145 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER92_RS10155 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BER92_RS10160 PF01176 Translation initiation factor 1A / IF-1 BER92_RS10165 PF07724 AAA domain (Cdc48 subfamily) BER92_RS10165 PF17871 AAA lid domain BER92_RS10165 PF02861 Clp amino terminal domain, pathogenicity island component BER92_RS10165 PF10431 C-terminal, D2-small domain, of ClpB protein BER92_RS10165 PF00004 ATPase family associated with various cellular activities (AAA) BER92_RS10170 PF02617 ATP-dependent Clp protease adaptor protein ClpS BER92_RS10175 PF00293 NUDIX domain BER92_RS10185 PF04356 Protein of unknown function (DUF489) BER92_RS10190 PF00672 HAMP domain BER92_RS10190 PF12729 Four helix bundle sensory module for signal transduction BER92_RS10190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER92_RS10210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS10210 PF13492 GAF domain BER92_RS10210 PF07730 Histidine kinase BER92_RS10215 PF03707 Bacterial signalling protein N terminal repeat BER92_RS10215 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS10215 PF00563 EAL domain BER92_RS10220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS10220 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS10220 PF00989 PAS fold BER92_RS10220 PF13426 PAS domain BER92_RS10220 PF13188 PAS domain BER92_RS10240 PF00072 Response regulator receiver domain BER92_RS10240 PF01584 CheW-like domain BER92_RS10245 PF00460 Flagella basal body rod protein BER92_RS10250 PF00460 Flagella basal body rod protein BER92_RS10250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER92_RS10255 PF03963 Flagellar hook capping protein - N-terminal region BER92_RS10260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER92_RS10260 PF07559 Flagellar basal body protein FlaE BER92_RS10260 PF00460 Flagella basal body rod protein BER92_RS10265 PF00460 Flagella basal body rod protein BER92_RS10265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER92_RS10270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER92_RS10270 PF00460 Flagella basal body rod protein BER92_RS10275 PF02107 Flagellar L-ring protein BER92_RS10280 PF02119 Flagellar P-ring protein BER92_RS10285 PF10135 Rod binding protein BER92_RS10285 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BER92_RS10290 PF07196 Flagellin hook IN motif BER92_RS10290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER92_RS10295 PF00700 Bacterial flagellin C-terminal helical region BER92_RS10295 PF00669 Bacterial flagellin N-terminal helical region BER92_RS10300 PF00669 Bacterial flagellin N-terminal helical region BER92_RS10300 PF00700 Bacterial flagellin C-terminal helical region BER92_RS10305 PF07195 Flagellar hook-associated protein 2 C-terminus BER92_RS10305 PF07196 Flagellin hook IN motif BER92_RS10305 PF02465 Flagellar hook-associated protein 2 N-terminus BER92_RS10310 PF02561 Flagellar protein FliS BER92_RS10325 PF00196 Bacterial regulatory proteins, luxR family BER92_RS10325 PF00072 Response regulator receiver domain BER92_RS10330 PF04552 Sigma-54, DNA binding domain BER92_RS10330 PF04963 Sigma-54 factor, core binding domain BER92_RS10330 PF00309 Sigma-54 factor, Activator interacting domain (AID) BER92_RS10335 PF00072 Response regulator receiver domain BER92_RS10335 PF01339 CheB methylesterase BER92_RS10340 PF00158 Sigma-54 interaction domain BER92_RS10340 PF06490 Flagellar regulatory protein FleQ BER92_RS10340 PF02954 Bacterial regulatory protein, Fis family BER92_RS10350 PF00534 Glycosyl transferases group 1 BER92_RS10350 PF00535 Glycosyl transferase family 2 BER92_RS10360 PF02049 Flagellar hook-basal body complex protein FliE BER92_RS10365 PF08345 Flagellar M-ring protein C-terminal BER92_RS10365 PF01514 Secretory protein of YscJ/FliF family BER92_RS10370 PF01706 FliG C-terminal domain BER92_RS10370 PF14841 FliG middle domain BER92_RS10370 PF14842 FliG N-terminal domain BER92_RS10380 PF18269 T3SS EscN ATPase C-terminal domain BER92_RS10380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER92_RS10400 PF02154 Flagellar motor switch protein FliM BER92_RS10400 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BER92_RS10405 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BER92_RS10410 PF04347 Flagellar biosynthesis protein, FliO BER92_RS10415 PF00813 FliP family BER92_RS10420 PF01313 Bacterial export proteins, family 3 BER92_RS10425 PF01311 Bacterial export proteins, family 1 BER92_RS10435 PF13188 PAS domain BER92_RS10435 PF00563 EAL domain BER92_RS10435 PF03707 Bacterial signalling protein N terminal repeat BER92_RS10435 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS10440 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS10445 PF01312 FlhB HrpN YscU SpaS Family BER92_RS10450 PF00771 FHIPEP family BER92_RS10455 PF00448 SRP54-type protein, GTPase domain BER92_RS10460 PF10609 NUBPL iron-transfer P-loop NTPase BER92_RS10465 PF04545 Sigma-70, region 4 BER92_RS10465 PF04542 Sigma-70 region 2 BER92_RS10465 PF04539 Sigma-70 region 3 BER92_RS10470 PF00072 Response regulator receiver domain BER92_RS10475 PF04344 Chemotaxis phosphatase, CheZ BER92_RS10480 PF01627 Hpt domain BER92_RS10480 PF00072 Response regulator receiver domain BER92_RS10480 PF01584 CheW-like domain BER92_RS10480 PF02895 Signal transducing histidine kinase, homodimeric domain BER92_RS10480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS10535 PF01609 Transposase DDE domain BER92_RS10545 PF00082 Subtilase family BER92_RS10545 PF03797 Autotransporter beta-domain BER92_RS10550 PF00873 AcrB/AcrD/AcrF family BER92_RS10560 PF01527 Transposase BER92_RS10575 PF01609 Transposase DDE domain BER92_RS10585 PF14821 Threonine synthase N terminus BER92_RS10585 PF00291 Pyridoxal-phosphate dependent enzyme BER92_RS10595 PF07519 Tannase and feruloyl esterase BER92_RS10600 PF05598 Transposase domain (DUF772) BER92_RS10605 PF08544 GHMP kinases C terminal BER92_RS10605 PF00288 GHMP kinases N terminal domain BER92_RS10610 PF01842 ACT domain BER92_RS10610 PF00742 Homoserine dehydrogenase BER92_RS10610 PF00696 Amino acid kinase family BER92_RS10610 PF13840 ACT domain BER92_RS10610 PF03447 Homoserine dehydrogenase, NAD binding domain BER92_RS10615 PF03073 TspO/MBR family BER92_RS10620 PF01527 Transposase BER92_RS10630 PF05598 Transposase domain (DUF772) BER92_RS10630 PF01609 Transposase DDE domain BER92_RS10650 PF13195 Protein of unknown function (DUF4011) BER92_RS10650 PF13086 AAA domain BER92_RS10650 PF13087 AAA domain BER92_RS10660 PF13086 AAA domain BER92_RS10660 PF13195 Protein of unknown function (DUF4011) BER92_RS10660 PF13087 AAA domain BER92_RS10665 PF13333 Integrase core domain BER92_RS10665 PF00665 Integrase core domain BER92_RS10665 PF13276 HTH-like domain BER92_RS10670 PF01527 Transposase BER92_RS10675 PF00171 Aldehyde dehydrogenase family BER92_RS10690 PF01180 Dihydroorotate dehydrogenase BER92_RS10695 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BER92_RS10695 PF01565 FAD binding domain BER92_RS10705 PF01569 PAP2 superfamily BER92_RS10710 PF04551 GcpE protein BER92_RS10720 PF02954 Bacterial regulatory protein, Fis family BER92_RS10720 PF00072 Response regulator receiver domain BER92_RS10730 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS10730 PF01590 GAF domain BER92_RS10730 PF00563 EAL domain BER92_RS10730 PF00360 Phytochrome region BER92_RS10750 PF01609 Transposase DDE domain BER92_RS10750 PF05598 Transposase domain (DUF772) BER92_RS10770 PF00474 Sodium:solute symporter family BER92_RS10775 PF07691 PA14 domain BER92_RS10775 PF14310 Fibronectin type III-like domain BER92_RS10775 PF00933 Glycosyl hydrolase family 3 N terminal domain BER92_RS10775 PF01915 Glycosyl hydrolase family 3 C-terminal domain BER92_RS10820 PF00342 Phosphoglucose isomerase BER92_RS10825 PF02261 Aspartate decarboxylase BER92_RS10830 PF02569 Pantoate-beta-alanine ligase BER92_RS10835 PF02548 Ketopantoate hydroxymethyltransferase BER92_RS10840 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BER92_RS10845 PF01743 Poly A polymerase head domain BER92_RS10845 PF12626 Polymerase A arginine-rich C-terminus BER92_RS10845 PF12627 Probable RNA and SrmB- binding site of polymerase A BER92_RS10855 PF02649 Type I GTP cyclohydrolase folE2 BER92_RS10860 PF00083 Sugar (and other) transporter BER92_RS10870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BER92_RS10870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BER92_RS10880 PF17137 Domain of unknown function (DUF5110) BER92_RS10880 PF01055 Glycosyl hydrolases family 31 BER92_RS10880 PF16338 Domain of unknown function (DUF4968) BER92_RS10900 PF05598 Transposase domain (DUF772) BER92_RS10925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER92_RS10925 PF03466 LysR substrate binding domain BER92_RS10930 PF01081 KDPG and KHG aldolase BER92_RS10935 PF13378 Enolase C-terminal domain-like BER92_RS10935 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BER92_RS10940 PF08450 SMP-30/Gluconolactonase/LRE-like region BER92_RS10945 PF05035 2-keto-3-deoxy-galactonokinase BER92_RS10950 PF00037 4Fe-4S binding domain BER92_RS10950 PF11953 Domain of unknown function (DUF3470) BER92_RS10960 PF00701 Dihydrodipicolinate synthetase family BER92_RS10975 PF00578 AhpC/TSA family BER92_RS10980 PF02562 PhoH-like protein BER92_RS10980 PF13638 PIN domain BER92_RS10990 PF02581 Thiamine monophosphate synthase BER92_RS10990 PF08543 Phosphomethylpyrimidine kinase BER92_RS11005 PF03466 LysR substrate binding domain BER92_RS11005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER92_RS11010 PF02678 Pirin BER92_RS11010 PF17954 Quercetinase C-terminal cupin domain BER92_RS11030 PF02599 Global regulator protein family BER92_RS11035 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BER92_RS11035 PF02272 DHHA1 domain BER92_RS11035 PF01411 tRNA synthetases class II (A) BER92_RS11040 PF02631 RecX family BER92_RS11045 PF00154 recA bacterial DNA recombination protein BER92_RS11050 PF01726 LexA DNA binding domain BER92_RS11050 PF00717 Peptidase S24-like BER92_RS11055 PF03109 ABC1 family BER92_RS11105 PF01527 Transposase BER92_RS11110 PF13683 Integrase core domain BER92_RS11110 PF13276 HTH-like domain BER92_RS11115 PF13683 Integrase core domain BER92_RS11115 PF13276 HTH-like domain BER92_RS11150 PF07715 TonB-dependent Receptor Plug Domain BER92_RS11150 PF00593 TonB dependent receptor BER92_RS11155 PF02464 Competence-damaged protein BER92_RS11165 PF01926 50S ribosome-binding GTPase BER92_RS11165 PF16360 GTP-binding GTPase Middle Region BER92_RS11165 PF13167 GTP-binding GTPase N-terminal BER92_RS11170 PF17209 Hfq protein BER92_RS11180 PF00809 Pterin binding enzyme BER92_RS11185 PF00004 ATPase family associated with various cellular activities (AAA) BER92_RS11185 PF06480 FtsH Extracellular BER92_RS11185 PF17862 AAA+ lid domain BER92_RS11185 PF01434 Peptidase family M41 BER92_RS11190 PF01728 FtsJ-like methyltransferase BER92_RS11195 PF01985 CRS1 / YhbY (CRM) domain BER92_RS11200 PF04430 Protein of unknown function (DUF498/DUF598) BER92_RS11220 PF01527 Transposase BER92_RS11305 PF13296 Putative type VI secretion system Rhs element Vgr BER92_RS11305 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS11305 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BER92_RS11310 PF03781 Sulfatase-modifying factor enzyme 1 BER92_RS11320 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS11320 PF06715 Gp5 C-terminal repeat (3 copies) BER92_RS11335 PF04972 BON domain BER92_RS11335 PF00691 OmpA family BER92_RS11345 PF06761 Intracellular multiplication and human macrophage-killing BER92_RS11345 PF14331 ImcF-related N-terminal domain BER92_RS11345 PF06744 Type VI secretion protein IcmF C-terminal BER92_RS11410 PF03527 RHS protein BER92_RS11420 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS11425 PF13340 Putative transposase of IS4/5 family (DUF4096) BER92_RS11430 PF01609 Transposase DDE domain BER92_RS11435 PF05598 Transposase domain (DUF772) BER92_RS11435 PF01609 Transposase DDE domain BER92_RS11475 PF01066 CDP-alcohol phosphatidyltransferase BER92_RS11480 PF01541 GIY-YIG catalytic domain BER92_RS11480 PF02151 UvrB/uvrC motif BER92_RS11480 PF08459 UvrC Helix-hairpin-helix N-terminal BER92_RS11495 PF02348 Cytidylyltransferase BER92_RS11500 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BER92_RS11505 PF00664 ABC transporter transmembrane region BER92_RS11505 PF00005 ABC transporter BER92_RS11510 PF02472 Biopolymer transport protein ExbD/TolR BER92_RS11515 PF01618 MotA/TolQ/ExbB proton channel family BER92_RS11520 PF03772 Competence protein BER92_RS11520 PF00753 Metallo-beta-lactamase superfamily BER92_RS11530 PF00005 ABC transporter BER92_RS11535 PF12704 MacB-like periplasmic core domain BER92_RS11535 PF02687 FtsX-like permease family BER92_RS11545 PF03937 Flavinator of succinate dehydrogenase BER92_RS11550 PF13085 2Fe-2S iron-sulfur cluster binding domain BER92_RS11560 PF00890 FAD binding domain BER92_RS11560 PF02910 Fumarate reductase flavoprotein C-term BER92_RS11565 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BER92_RS11570 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BER92_RS11580 PF17912 MalK OB fold domain BER92_RS11580 PF00005 ABC transporter BER92_RS11585 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BER92_RS11585 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BER92_RS11590 PF02685 Glucokinase BER92_RS11595 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BER92_RS11600 PF00920 Dehydratase family BER92_RS11605 PF01081 KDPG and KHG aldolase BER92_RS11620 PF00034 Cytochrome c BER92_RS11635 PF05598 Transposase domain (DUF772) BER92_RS11660 PF00072 Response regulator receiver domain BER92_RS11660 PF01627 Hpt domain BER92_RS11660 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS11660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS11665 PF00575 S1 RNA binding domain BER92_RS11665 PF17674 HHH domain BER92_RS11665 PF09371 Tex-like protein N-terminal domain BER92_RS11665 PF16921 Tex protein YqgF-like domain BER92_RS11690 PF00561 alpha/beta hydrolase fold BER92_RS11700 PF01066 CDP-alcohol phosphatidyltransferase BER92_RS11715 PF03618 Kinase/pyrophosphorylase BER92_RS11720 PF00391 PEP-utilising enzyme, mobile domain BER92_RS11720 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BER92_RS11720 PF02896 PEP-utilising enzyme, TIM barrel domain BER92_RS11725 PF05552 Conserved TM helix BER92_RS11725 PF00924 Mechanosensitive ion channel BER92_RS11730 PF00929 Exonuclease BER92_RS11735 PF14437 MafB19-like deaminase BER92_RS11740 PF01325 Iron dependent repressor, N-terminal DNA binding domain BER92_RS11740 PF02742 Iron dependent repressor, metal binding and dimerisation domain BER92_RS11745 PF01566 Natural resistance-associated macrophage protein BER92_RS11750 PF00561 alpha/beta hydrolase fold BER92_RS11755 PF05598 Transposase domain (DUF772) BER92_RS11795 PF01527 Transposase BER92_RS11800 PF13683 Integrase core domain BER92_RS11800 PF13276 HTH-like domain BER92_RS11815 PF00665 Integrase core domain BER92_RS11815 PF13276 HTH-like domain BER92_RS11815 PF13333 Integrase core domain BER92_RS11820 PF01527 Transposase BER92_RS11830 PF05598 Transposase domain (DUF772) BER92_RS11840 PF00171 Aldehyde dehydrogenase family BER92_RS11845 PF01472 PUA domain BER92_RS11845 PF00696 Amino acid kinase family BER92_RS11860 PF00206 Lyase BER92_RS11865 PF01118 Semialdehyde dehydrogenase, NAD binding domain BER92_RS11875 PF00696 Amino acid kinase family BER92_RS11875 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase BER92_RS11880 PF01546 Peptidase family M20/M25/M40 BER92_RS11880 PF07687 Peptidase dimerisation domain BER92_RS11885 PF00764 Arginosuccinate synthase BER92_RS11890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BER92_RS11890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BER92_RS11900 PF09190 DALR domain BER92_RS11900 PF01406 tRNA synthetases class I (C) catalytic domain BER92_RS11905 PF02657 Fe-S metabolism associated domain BER92_RS11915 PF01258 Prokaryotic dksA/traR C4-type zinc finger BER92_RS11920 PF01979 Amidohydrolase family BER92_RS11925 PF01551 Peptidase family M23 BER92_RS11925 PF08460 Bacterial SH3 domain BER92_RS11930 PF01609 Transposase DDE domain BER92_RS11930 PF05598 Transposase domain (DUF772) BER92_RS11960 PF00295 Glycosyl hydrolases family 28 BER92_RS11970 PF13419 Haloacid dehalogenase-like hydrolase BER92_RS11980 PF01979 Amidohydrolase family BER92_RS11990 PF01132 Elongation factor P (EF-P) OB domain BER92_RS11990 PF08207 Elongation factor P (EF-P) KOW-like domain BER92_RS11990 PF09285 Elongation factor P, C-terminal BER92_RS11995 PF04055 Radical SAM superfamily BER92_RS12000 PF00588 SpoU rRNA Methylase family BER92_RS12005 PF00459 Inositol monophosphatase family BER92_RS12010 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BER92_RS12010 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BER92_RS12015 PF00545 ribonuclease BER92_RS12025 PF00005 ABC transporter BER92_RS12025 PF16326 ABC transporter C-terminal domain BER92_RS12025 PF12848 ABC transporter BER92_RS12030 PF03880 DbpA RNA binding domain BER92_RS12030 PF00270 DEAD/DEAH box helicase BER92_RS12030 PF00271 Helicase conserved C-terminal domain BER92_RS12035 PF00156 Phosphoribosyl transferase domain BER92_RS12040 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BER92_RS12050 PF02798 Glutathione S-transferase, N-terminal domain BER92_RS12050 PF14497 Glutathione S-transferase, C-terminal domain BER92_RS12055 PF00313 'Cold-shock' DNA-binding domain BER92_RS12065 PF07152 YaeQ protein BER92_RS12075 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS12075 PF00563 EAL domain BER92_RS12075 PF00072 Response regulator receiver domain BER92_RS12080 PF01435 Peptidase family M48 BER92_RS12085 PF00749 tRNA synthetases class I (E and Q), catalytic domain BER92_RS12090 PF00106 short chain dehydrogenase BER92_RS12095 PF05233 PHB accumulation regulatory domain BER92_RS12095 PF07879 PHB/PHA accumulation regulator DNA-binding domain BER92_RS12110 PF01119 DNA mismatch repair protein, C-terminal domain BER92_RS12110 PF08676 MutL C terminal dimerisation domain BER92_RS12115 PF01520 N-acetylmuramoyl-L-alanine amidase BER92_RS12115 PF11741 AMIN domain BER92_RS12125 PF01256 Carbohydrate kinase BER92_RS12125 PF03853 YjeF-related protein N-terminus BER92_RS12130 PF08331 Domain of unknown function (DUF1730) BER92_RS12135 PF02601 Exonuclease VII, large subunit BER92_RS12135 PF13742 OB-fold nucleic acid binding domain BER92_RS12155 PF02592 Putative vitamin uptake transporter BER92_RS12175 PF02574 Homocysteine S-methyltransferase BER92_RS12180 PF00324 Amino acid permease BER92_RS12190 PF09334 tRNA synthetases class I (M) BER92_RS12190 PF01588 Putative tRNA binding domain BER92_RS12200 PF04060 Putative Fe-S cluster BER92_RS12215 PF04542 Sigma-70 region 2 BER92_RS12215 PF04545 Sigma-70, region 4 BER92_RS12260 PF01042 Endoribonuclease L-PSP BER92_RS12270 PF09924 Uncharacterised conserved protein (DUF2156) BER92_RS12270 PF03706 Lysylphosphatidylglycerol synthase TM region BER92_RS12290 PF05598 Transposase domain (DUF772) BER92_RS12305 PF07690 Major Facilitator Superfamily BER92_RS12310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BER92_RS12315 PF03831 PhnA domain BER92_RS12315 PF08274 PhnA Zinc-Ribbon BER92_RS12350 PF01272 Transcription elongation factor, GreA/GreB, C-term BER92_RS12350 PF03449 Transcription elongation factor, N-terminal BER92_RS12365 PF00919 Uncharacterized protein family UPF0004 BER92_RS12365 PF18693 TRAM domain BER92_RS12365 PF04055 Radical SAM superfamily BER92_RS12380 PF01738 Dienelactone hydrolase family BER92_RS12390 PF00692 dUTPase BER92_RS12395 PF10609 NUBPL iron-transfer P-loop NTPase BER92_RS12410 PF01431 Peptidase family M13 BER92_RS12410 PF05649 Peptidase family M13 BER92_RS12430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER92_RS12430 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER92_RS12435 PF01266 FAD dependent oxidoreductase BER92_RS12440 PF04235 Protein of unknown function (DUF418) BER92_RS12445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER92_RS12450 PF00877 NlpC/P60 family BER92_RS12455 PF00877 NlpC/P60 family BER92_RS12465 PF01527 Transposase BER92_RS12470 PF13276 HTH-like domain BER92_RS12470 PF00665 Integrase core domain BER92_RS12470 PF13333 Integrase core domain BER92_RS12475 PF05598 Transposase domain (DUF772) BER92_RS12480 PF05598 Transposase domain (DUF772) BER92_RS12480 PF01609 Transposase DDE domain BER92_RS12505 PF03466 LysR substrate binding domain BER92_RS12505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER92_RS12510 PF02403 Seryl-tRNA synthetase N-terminal domain BER92_RS12510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BER92_RS12515 PF03544 Gram-negative bacterial TonB protein C-terminal BER92_RS12525 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BER92_RS12530 PF01817 Chorismate mutase type II BER92_RS12530 PF01842 ACT domain BER92_RS12530 PF00800 Prephenate dehydratase BER92_RS12535 PF00266 Aminotransferase class-V BER92_RS12540 PF00174 Oxidoreductase molybdopterin binding domain BER92_RS12545 PF00356 Bacterial regulatory proteins, lacI family BER92_RS12550 PF02896 PEP-utilising enzyme, TIM barrel domain BER92_RS12550 PF00381 PTS HPr component phosphorylation site BER92_RS12550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BER92_RS12550 PF05524 PEP-utilising enzyme, N-terminal BER92_RS12550 PF00391 PEP-utilising enzyme, mobile domain BER92_RS12555 PF00294 pfkB family carbohydrate kinase BER92_RS12560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BER92_RS12570 PF02355 Protein export membrane protein BER92_RS12570 PF07549 SecD/SecF GG Motif BER92_RS12575 PF07549 SecD/SecF GG Motif BER92_RS12575 PF02355 Protein export membrane protein BER92_RS12575 PF13721 SecD export protein N-terminal TM region BER92_RS12580 PF02699 Preprotein translocase subunit BER92_RS12585 PF01702 Queuine tRNA-ribosyltransferase BER92_RS12590 PF02547 Queuosine biosynthesis protein BER92_RS12600 PF00202 Aminotransferase class-III BER92_RS12620 PF13340 Putative transposase of IS4/5 family (DUF4096) BER92_RS12625 PF01609 Transposase DDE domain BER92_RS12630 PF00759 Glycosyl hydrolase family 9 BER92_RS12630 PF02927 Cellulase N-terminal ig-like domain BER92_RS12640 PF00037 4Fe-4S binding domain BER92_RS12650 PF01467 Cytidylyltransferase-like BER92_RS12660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS12660 PF00183 Hsp90 protein BER92_RS12685 PF01609 Transposase DDE domain BER92_RS12685 PF05598 Transposase domain (DUF772) BER92_RS12700 PF00375 Sodium:dicarboxylate symporter family BER92_RS12705 PF00245 Alkaline phosphatase BER92_RS12710 PF11734 TilS substrate C-terminal domain BER92_RS12710 PF09179 TilS substrate binding domain BER92_RS12710 PF01171 PP-loop family BER92_RS12715 PF02609 Exonuclease VII small subunit BER92_RS12720 PF00348 Polyprenyl synthetase BER92_RS12735 PF01523 Putative modulator of DNA gyrase BER92_RS12740 PF04751 Protein of unknown function (DUF615) BER92_RS12745 PF01523 Putative modulator of DNA gyrase BER92_RS12760 PF10150 Ribonuclease E/G family BER92_RS12760 PF00575 S1 RNA binding domain BER92_RS12765 PF02545 Maf-like protein BER92_RS12770 PF04402 Protein of unknown function (DUF541) BER92_RS12775 PF02590 Predicted SPOUT methyltransferase BER92_RS12780 PF01527 Transposase BER92_RS12805 PF01467 Cytidylyltransferase-like BER92_RS12820 PF13603 Leucyl-tRNA synthetase, Domain 2 BER92_RS12820 PF00133 tRNA synthetases class I (I, L, M and V) BER92_RS12820 PF08264 Anticodon-binding domain of tRNA BER92_RS12830 PF00085 Thioredoxin BER92_RS12855 PF01464 Transglycosylase SLT domain BER92_RS12865 PF00263 Bacterial type II and III secretion system protein BER92_RS12865 PF03958 Bacterial type II/III secretion system short domain BER92_RS12880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER92_RS12880 PF02874 ATP synthase alpha/beta family, beta-barrel domain BER92_RS12880 PF18269 T3SS EscN ATPase C-terminal domain BER92_RS12895 PF01514 Secretory protein of YscJ/FliF family BER92_RS12910 PF01312 FlhB HrpN YscU SpaS Family BER92_RS12915 PF00771 FHIPEP family BER92_RS12930 PF00813 FliP family BER92_RS12935 PF01313 Bacterial export proteins, family 3 BER92_RS12965 PF03211 Pectate lyase BER92_RS12990 PF04070 Domain of unknown function (DUF378) BER92_RS13015 PF01609 Transposase DDE domain BER92_RS13025 PF00005 ABC transporter BER92_RS13025 PF00664 ABC transporter transmembrane region BER92_RS13035 PF00999 Sodium/hydrogen exchanger family BER92_RS13055 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS13060 PF00849 RNA pseudouridylate synthase BER92_RS13060 PF01479 S4 domain BER92_RS13070 PF08448 PAS fold BER92_RS13070 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS13070 PF00563 EAL domain BER92_RS13075 PF00270 DEAD/DEAH box helicase BER92_RS13075 PF00271 Helicase conserved C-terminal domain BER92_RS13075 PF03880 DbpA RNA binding domain BER92_RS13120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BER92_RS13120 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BER92_RS13135 PF07715 TonB-dependent Receptor Plug Domain BER92_RS13135 PF00593 TonB dependent receptor BER92_RS13145 PF00384 Molybdopterin oxidoreductase BER92_RS13145 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER92_RS13145 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BER92_RS13145 PF12838 4Fe-4S dicluster domain BER92_RS13145 PF01568 Molydopterin dinucleotide binding domain BER92_RS13155 PF13860 FlgD Ig-like domain BER92_RS13155 PF05922 Peptidase inhibitor I9 BER92_RS13155 PF00082 Subtilase family BER92_RS13155 PF02225 PA domain BER92_RS13180 PF00150 Cellulase (glycosyl hydrolase family 5) BER92_RS13185 PF05598 Transposase domain (DUF772) BER92_RS13190 PF01475 Ferric uptake regulator family BER92_RS13195 PF00749 tRNA synthetases class I (E and Q), catalytic domain BER92_RS13225 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BER92_RS13235 PF17757 UvrB interaction domain BER92_RS13235 PF02559 CarD-like/TRCF domain BER92_RS13235 PF00270 DEAD/DEAH box helicase BER92_RS13235 PF00271 Helicase conserved C-terminal domain BER92_RS13235 PF03461 TRCF domain BER92_RS13240 PF00488 MutS domain V BER92_RS13240 PF01624 MutS domain I BER92_RS13240 PF05192 MutS domain III BER92_RS13240 PF05190 MutS family domain IV BER92_RS13240 PF05188 MutS domain II BER92_RS13245 PF00141 Peroxidase BER92_RS13255 PF01609 Transposase DDE domain BER92_RS13260 PF01527 Transposase BER92_RS13280 PF00300 Histidine phosphatase superfamily (branch 1) BER92_RS13285 PF04493 Endonuclease V BER92_RS13310 PF02554 Carbon starvation protein CstA BER92_RS13310 PF13722 5TM C-terminal transporter carbon starvation CstA BER92_RS13315 PF04328 Selenoprotein, putative BER92_RS13320 PF13419 Haloacid dehalogenase-like hydrolase BER92_RS13335 PF12804 MobA-like NTP transferase domain BER92_RS13345 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BER92_RS13345 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BER92_RS13345 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BER92_RS13345 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BER92_RS13350 PF00360 Phytochrome region BER92_RS13350 PF00563 EAL domain BER92_RS13350 PF01590 GAF domain BER92_RS13350 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS13355 PF00436 Single-strand binding protein family BER92_RS13365 PF00348 Polyprenyl synthetase BER92_RS13375 PF08245 Mur ligase middle domain BER92_RS13390 PF00696 Amino acid kinase family BER92_RS13390 PF01842 ACT domain BER92_RS13400 PF02567 Phenazine biosynthesis-like protein BER92_RS13410 PF02566 OsmC-like protein BER92_RS13415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BER92_RS13415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BER92_RS13420 PF03652 Holliday junction resolvase BER92_RS13425 PF02622 Uncharacterized ACR, COG1678 BER92_RS13445 PF00437 Type II/IV secretion system protein BER92_RS13450 PF00437 Type II/IV secretion system protein BER92_RS13455 PF01168 Alanine racemase, N-terminal domain BER92_RS13460 PF14748 Pyrroline-5-carboxylate reductase dimerisation BER92_RS13460 PF03807 NADP oxidoreductase coenzyme F420-dependent BER92_RS13490 PF02082 Transcriptional regulator BER92_RS13495 PF01458 Uncharacterized protein family (UPF0051) BER92_RS13500 PF00005 ABC transporter BER92_RS13505 PF01458 Uncharacterized protein family (UPF0051) BER92_RS13510 PF00266 Aminotransferase class-V BER92_RS13520 PF00355 Rieske [2Fe-2S] domain BER92_RS13525 PF00593 TonB dependent receptor BER92_RS13525 PF07715 TonB-dependent Receptor Plug Domain BER92_RS13530 PF13640 2OG-Fe(II) oxygenase superfamily BER92_RS13530 PF18331 PKHD-type hydroxylase C-terminal domain BER92_RS13540 PF01527 Transposase BER92_RS13565 PF07687 Peptidase dimerisation domain BER92_RS13565 PF01546 Peptidase family M20/M25/M40 BER92_RS13575 PF01636 Phosphotransferase enzyme family BER92_RS13580 PF00483 Nucleotidyl transferase BER92_RS13590 PF00308 Bacterial dnaA protein BER92_RS13595 PF01594 AI-2E family transporter BER92_RS13605 PF02769 AIR synthase related protein, C-terminal domain BER92_RS13605 PF00586 AIR synthase related protein, N-terminal domain BER92_RS13610 PF00551 Formyl transferase BER92_RS13635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BER92_RS13640 PF01722 BolA-like protein BER92_RS13645 PF00571 CBS domain BER92_RS13645 PF01380 SIS domain BER92_RS13660 PF03968 OstA-like protein BER92_RS13665 PF00005 ABC transporter BER92_RS13670 PF04552 Sigma-54, DNA binding domain BER92_RS13670 PF04963 Sigma-54 factor, core binding domain BER92_RS13670 PF00309 Sigma-54 factor, Activator interacting domain (AID) BER92_RS13675 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BER92_RS13680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BER92_RS13685 PF02603 HPr Serine kinase N terminus BER92_RS13685 PF07475 HPr Serine kinase C-terminal domain BER92_RS13690 PF03668 P-loop ATPase protein family BER92_RS13700 PF00381 PTS HPr component phosphorylation site BER92_RS13705 PF05524 PEP-utilising enzyme, N-terminal BER92_RS13705 PF02896 PEP-utilising enzyme, TIM barrel domain BER92_RS13705 PF00391 PEP-utilising enzyme, mobile domain BER92_RS13710 PF00571 CBS domain BER92_RS13710 PF01769 Divalent cation transporter BER92_RS13710 PF03448 MgtE intracellular N domain BER92_RS13715 PF01527 Transposase BER92_RS13745 PF02685 Glucokinase BER92_RS13760 PF01476 LysM domain BER92_RS13760 PF00704 Glycosyl hydrolases family 18 BER92_RS13765 PF00728 Glycosyl hydrolase family 20, catalytic domain BER92_RS13765 PF02838 Glycosyl hydrolase family 20, domain 2 BER92_RS13765 PF07691 PA14 domain BER92_RS13775 PF07691 PA14 domain BER92_RS13775 PF14310 Fibronectin type III-like domain BER92_RS13775 PF01915 Glycosyl hydrolase family 3 C-terminal domain BER92_RS13775 PF00933 Glycosyl hydrolase family 3 N terminal domain BER92_RS13780 PF00664 ABC transporter transmembrane region BER92_RS13780 PF00005 ABC transporter BER92_RS13780 PF03412 Peptidase C39 family BER92_RS13785 PF01527 Transposase BER92_RS13790 PF13276 HTH-like domain BER92_RS13790 PF13683 Integrase core domain BER92_RS13800 PF01609 Transposase DDE domain BER92_RS13805 PF05598 Transposase domain (DUF772) BER92_RS13805 PF01609 Transposase DDE domain BER92_RS13815 PF13333 Integrase core domain BER92_RS13815 PF00665 Integrase core domain BER92_RS13815 PF13276 HTH-like domain BER92_RS13820 PF01527 Transposase BER92_RS13835 PF01433 Peptidase family M1 domain BER92_RS13840 PF00709 Adenylosuccinate synthetase BER92_RS13850 PF01145 SPFH domain / Band 7 family BER92_RS13855 PF12221 Bacterial membrane protein N terminal BER92_RS13855 PF01145 SPFH domain / Band 7 family BER92_RS13860 PF00072 Response regulator receiver domain BER92_RS13865 PF00226 DnaJ domain BER92_RS13865 PF01556 DnaJ C terminal domain BER92_RS13875 PF08534 Redoxin BER92_RS13910 PF01609 Transposase DDE domain BER92_RS13920 PF07715 TonB-dependent Receptor Plug Domain BER92_RS13920 PF00593 TonB dependent receptor BER92_RS13925 PF04303 PrpF protein BER92_RS13930 PF00694 Aconitase C-terminal domain BER92_RS13930 PF00330 Aconitase family (aconitate hydratase) BER92_RS13935 PF00285 Citrate synthase, C-terminal domain BER92_RS13945 PF06506 Propionate catabolism activator BER92_RS13945 PF00158 Sigma-54 interaction domain BER92_RS13945 PF02954 Bacterial regulatory protein, Fis family BER92_RS13960 PF01609 Transposase DDE domain BER92_RS13960 PF05598 Transposase domain (DUF772) BER92_RS13980 PF09115 DNA polymerase III, delta subunit, C terminal BER92_RS13985 PF02618 YceG-like family BER92_RS13990 PF04715 Anthranilate synthase component I, N terminal region BER92_RS13990 PF00425 chorismate binding enzyme BER92_RS13995 PF00109 Beta-ketoacyl synthase, N-terminal domain BER92_RS13995 PF02801 Beta-ketoacyl synthase, C-terminal domain BER92_RS14000 PF00550 Phosphopantetheine attachment site BER92_RS14010 PF00698 Acyl transferase domain BER92_RS14015 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BER92_RS14015 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER92_RS14020 PF01783 Ribosomal L32p protein family BER92_RS14025 PF02620 Large ribosomal RNA subunit accumulation protein YceD BER92_RS14030 PF02545 Maf-like protein BER92_RS14050 PF17863 AAA lid domain BER92_RS14050 PF07726 ATPase family associated with various cellular activities (AAA) BER92_RS14060 PF11992 Domain of unknown function (DUF3488) BER92_RS14060 PF13559 Domain of unknown function (DUF4129) BER92_RS14060 PF01841 Transglutaminase-like superfamily BER92_RS14070 PF01230 HIT domain BER92_RS14075 PF02132 RecR protein BER92_RS14075 PF13662 Toprim domain BER92_RS14080 PF02575 YbaB/EbfC DNA-binding family BER92_RS14085 PF12170 DNA polymerase III tau subunit V interacting with alpha BER92_RS14085 PF12169 DNA polymerase III subunits gamma and tau domain III BER92_RS14085 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BER92_RS14100 PF02391 MoaE protein BER92_RS14110 PF01967 MoaC family BER92_RS14115 PF04055 Radical SAM superfamily BER92_RS14115 PF06463 Molybdenum Cofactor Synthesis C BER92_RS14120 PF00753 Metallo-beta-lactamase superfamily BER92_RS14130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BER92_RS14150 PF00929 Exonuclease BER92_RS14155 PF00075 RNase H BER92_RS14165 PF16123 Hydroxyacylglutathione hydrolase C-terminus BER92_RS14165 PF00753 Metallo-beta-lactamase superfamily BER92_RS14170 PF01476 LysM domain BER92_RS14170 PF05257 CHAP domain BER92_RS14180 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BER92_RS14180 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BER92_RS14180 PF06827 Zinc finger found in FPG and IleRS BER92_RS14185 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BER92_RS14185 PF07676 WD40-like Beta Propeller Repeat BER92_RS14185 PF00326 Prolyl oligopeptidase family BER92_RS14190 PF03169 OPT oligopeptide transporter protein BER92_RS14205 PF01609 Transposase DDE domain BER92_RS14220 PF02811 PHP domain BER92_RS14220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BER92_RS14220 PF07733 Bacterial DNA polymerase III alpha NTPase domain BER92_RS14220 PF14579 Helix-hairpin-helix motif BER92_RS14235 PF00717 Peptidase S24-like BER92_RS14235 PF01726 LexA DNA binding domain BER92_RS14245 PF01609 Transposase DDE domain BER92_RS14270 PF00111 2Fe-2S iron-sulfur cluster binding domain BER92_RS14270 PF01799 [2Fe-2S] binding domain BER92_RS14275 PF03450 CO dehydrogenase flavoprotein C-terminal domain BER92_RS14275 PF00941 FAD binding domain in molybdopterin dehydrogenase BER92_RS14280 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BER92_RS14280 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BER92_RS14295 PF01609 Transposase DDE domain BER92_RS14295 PF05598 Transposase domain (DUF772) BER92_RS14305 PF01527 Transposase BER92_RS14320 PF17755 UvrA DNA-binding domain BER92_RS14330 PF05598 Transposase domain (DUF772) BER92_RS14330 PF01609 Transposase DDE domain BER92_RS14355 PF05697 Bacterial trigger factor protein (TF) BER92_RS14355 PF05698 Bacterial trigger factor protein (TF) C-terminus BER92_RS14360 PF00574 Clp protease BER92_RS14365 PF07724 AAA domain (Cdc48 subfamily) BER92_RS14365 PF06689 ClpX C4-type zinc finger BER92_RS14365 PF10431 C-terminal, D2-small domain, of ClpB protein BER92_RS14370 PF00004 ATPase family associated with various cellular activities (AAA) BER92_RS14370 PF02190 ATP-dependent protease La (LON) substrate-binding domain BER92_RS14370 PF05362 Lon protease (S16) C-terminal proteolytic domain BER92_RS14375 PF00216 Bacterial DNA-binding protein BER92_RS14420 PF04055 Radical SAM superfamily BER92_RS14430 PF00691 OmpA family BER92_RS14435 PF04052 TolB amino-terminal domain BER92_RS14435 PF07676 WD40-like Beta Propeller Repeat BER92_RS14445 PF02472 Biopolymer transport protein ExbD/TolR BER92_RS14450 PF01618 MotA/TolQ/ExbB proton channel family BER92_RS14455 PF03061 Thioesterase superfamily BER92_RS14460 PF17864 RuvB AAA lid domain BER92_RS14460 PF05491 RuvB C-terminal winged helix domain BER92_RS14460 PF05496 Holliday junction DNA helicase RuvB P-loop domain BER92_RS14465 PF02705 K+ potassium transporter BER92_RS14470 PF01330 RuvA N terminal domain BER92_RS14470 PF07499 RuvA, C-terminal domain BER92_RS14475 PF02075 Crossover junction endodeoxyribonuclease RuvC BER92_RS14480 PF01709 Transcriptional regulator BER92_RS14495 PF02938 GAD domain BER92_RS14495 PF00152 tRNA synthetases class II (D, K and N) BER92_RS14495 PF01336 OB-fold nucleic acid binding domain BER92_RS14510 PF13406 Transglycosylase SLT domain BER92_RS14515 PF00005 ABC transporter BER92_RS14515 PF12848 ABC transporter BER92_RS14520 PF07715 TonB-dependent Receptor Plug Domain BER92_RS14520 PF00593 TonB dependent receptor BER92_RS14535 PF00593 TonB dependent receptor BER92_RS14535 PF07715 TonB-dependent Receptor Plug Domain BER92_RS14540 PF00593 TonB dependent receptor BER92_RS14540 PF07715 TonB-dependent Receptor Plug Domain BER92_RS14545 PF02254 TrkA-N domain BER92_RS14545 PF00999 Sodium/hydrogen exchanger family BER92_RS14555 PF05598 Transposase domain (DUF772) BER92_RS14575 PF00324 Amino acid permease BER92_RS14580 PF05598 Transposase domain (DUF772) BER92_RS14585 PF02203 Tar ligand binding domain homologue BER92_RS14585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER92_RS14585 PF00672 HAMP domain BER92_RS14595 PF00561 alpha/beta hydrolase fold BER92_RS14600 PF00196 Bacterial regulatory proteins, luxR family BER92_RS14605 PF00324 Amino acid permease BER92_RS14635 PF03738 Glutathionylspermidine synthase preATP-grasp BER92_RS14660 PF04012 PspA/IM30 family BER92_RS14675 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BER92_RS14675 PF01243 Pyridoxamine 5'-phosphate oxidase BER92_RS14680 PF01202 Shikimate kinase BER92_RS14685 PF01761 3-dehydroquinate synthase BER92_RS14695 PF01208 Uroporphyrinogen decarboxylase (URO-D) BER92_RS14700 PF07690 Major Facilitator Superfamily BER92_RS14705 PF01609 Transposase DDE domain BER92_RS14705 PF05598 Transposase domain (DUF772) BER92_RS14710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS14710 PF01627 Hpt domain BER92_RS14710 PF00072 Response regulator receiver domain BER92_RS14710 PF00672 HAMP domain BER92_RS14710 PF17149 Periplasmic sensor domain found in signal transduction proteins BER92_RS14710 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS14715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS14715 PF09308 LuxQ, periplasmic BER92_RS14715 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS14715 PF00072 Response regulator receiver domain BER92_RS14735 PF00072 Response regulator receiver domain BER92_RS14740 PF00072 Response regulator receiver domain BER92_RS14740 PF13426 PAS domain BER92_RS14740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS14770 PF12833 Helix-turn-helix domain BER92_RS14780 PF05656 Protein of unknown function (DUF805) BER92_RS14785 PF18073 Rubredoxin metal binding domain BER92_RS14795 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BER92_RS14800 PF00510 Cytochrome c oxidase subunit III BER92_RS14805 PF00115 Cytochrome C and Quinol oxidase polypeptide I BER92_RS14810 PF06481 COX Aromatic Rich Motif BER92_RS14810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BER92_RS14820 PF02401 LytB protein BER92_RS14825 PF01252 Signal peptidase (SPase) II BER92_RS14830 PF08264 Anticodon-binding domain of tRNA BER92_RS14830 PF00133 tRNA synthetases class I (I, L, M and V) BER92_RS14830 PF06827 Zinc finger found in FPG and IleRS BER92_RS14835 PF01687 Riboflavin kinase BER92_RS14835 PF06574 FAD synthetase BER92_RS14840 PF03023 Lipid II flippase MurJ BER92_RS14845 PF01649 Ribosomal protein S20 BER92_RS14850 PF01018 GTP1/OBG BER92_RS14850 PF01926 50S ribosome-binding GTPase BER92_RS14855 PF01016 Ribosomal L27 protein BER92_RS14860 PF00829 Ribosomal prokaryotic L21 protein BER92_RS14865 PF17755 UvrA DNA-binding domain BER92_RS14865 PF00005 ABC transporter BER92_RS14865 PF17760 UvrA interaction domain BER92_RS14880 PF00378 Enoyl-CoA hydratase/isomerase BER92_RS14900 PF08281 Sigma-70, region 4 BER92_RS14900 PF04542 Sigma-70 region 2 BER92_RS14910 PF04376 Arginine-tRNA-protein transferase, N terminus BER92_RS14910 PF04377 Arginine-tRNA-protein transferase, C terminus BER92_RS14920 PF05598 Transposase domain (DUF772) BER92_RS14935 PF01527 Transposase BER92_RS14940 PF02222 ATP-grasp domain BER92_RS14940 PF01370 NAD dependent epimerase/dehydratase family BER92_RS14970 PF00730 HhH-GPD superfamily base excision DNA repair protein BER92_RS14985 PF00072 Response regulator receiver domain BER92_RS14985 PF00196 Bacterial regulatory proteins, luxR family BER92_RS14990 PF07730 Histidine kinase BER92_RS15000 PF05209 Septum formation inhibitor MinC, N-terminal domain BER92_RS15000 PF03775 Septum formation inhibitor MinC, C-terminal domain BER92_RS15005 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BER92_RS15010 PF03776 Septum formation topological specificity factor MinE BER92_RS15020 PF08521 Two-component sensor kinase N-terminal BER92_RS15020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS15020 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS15025 PF00072 Response regulator receiver domain BER92_RS15025 PF00486 Transcriptional regulatory protein, C terminal BER92_RS15040 PF08019 Phosphoethanolamine transferase EptA/EptB BER92_RS15040 PF00884 Sulfatase BER92_RS15060 PF02347 Glycine cleavage system P-protein BER92_RS15065 PF06628 Catalase-related immune-responsive BER92_RS15065 PF18011 C-terminal domain found in long catalases BER92_RS15065 PF00199 Catalase BER92_RS15075 PF02311 AraC-like ligand binding domain BER92_RS15075 PF12833 Helix-turn-helix domain BER92_RS15085 PF01609 Transposase DDE domain BER92_RS15105 PF05598 Transposase domain (DUF772) BER92_RS15120 PF00593 TonB dependent receptor BER92_RS15120 PF07660 Secretin and TonB N terminus short domain BER92_RS15120 PF07715 TonB-dependent Receptor Plug Domain BER92_RS15130 PF04183 IucA / IucC family BER92_RS15130 PF06276 Ferric iron reductase FhuF-like transporter BER92_RS15135 PF07690 Major Facilitator Superfamily BER92_RS15140 PF04183 IucA / IucC family BER92_RS15140 PF06276 Ferric iron reductase FhuF-like transporter BER92_RS15145 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BER92_RS15145 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BER92_RS15150 PF00593 TonB dependent receptor BER92_RS15150 PF07715 TonB-dependent Receptor Plug Domain BER92_RS15160 PF10431 C-terminal, D2-small domain, of ClpB protein BER92_RS15160 PF02861 Clp amino terminal domain, pathogenicity island component BER92_RS15160 PF17871 AAA lid domain BER92_RS15160 PF07724 AAA domain (Cdc48 subfamily) BER92_RS15160 PF00004 ATPase family associated with various cellular activities (AAA) BER92_RS15190 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS15215 PF04717 Type VI secretion system, phage-baseplate injector BER92_RS15220 PF00665 Integrase core domain BER92_RS15220 PF13333 Integrase core domain BER92_RS15220 PF13276 HTH-like domain BER92_RS15225 PF01527 Transposase BER92_RS15240 PF05598 Transposase domain (DUF772) BER92_RS15275 PF05598 Transposase domain (DUF772) BER92_RS15280 PF00180 Isocitrate/isopropylmalate dehydrogenase BER92_RS15290 PF00462 Glutaredoxin BER92_RS15300 PF13181 Tetratricopeptide repeat BER92_RS15300 PF01435 Peptidase family M48 BER92_RS15305 PF00486 Transcriptional regulatory protein, C terminal BER92_RS15305 PF00072 Response regulator receiver domain BER92_RS15310 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS15310 PF11808 Phosphate regulon sensor protein PhoR BER92_RS15310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS15310 PF00989 PAS fold BER92_RS15315 PF13089 Polyphosphate kinase N-terminal domain BER92_RS15315 PF17941 Polyphosphate kinase C-terminal domain 1 BER92_RS15315 PF02503 Polyphosphate kinase middle domain BER92_RS15315 PF13090 Polyphosphate kinase C-terminal domain 2 BER92_RS15320 PF02541 Ppx/GppA phosphatase family BER92_RS15330 PF01569 PAP2 superfamily BER92_RS15335 PF00149 Calcineurin-like phosphoesterase BER92_RS15355 PF04305 Protein of unknown function (DUF455) BER92_RS15360 PF00156 Phosphoribosyl transferase domain BER92_RS15375 PF08245 Mur ligase middle domain BER92_RS15375 PF02875 Mur ligase family, glutamate ligase domain BER92_RS15395 PF05598 Transposase domain (DUF772) BER92_RS15405 PF17678 Glycosyl hydrolase family 92 N-terminal domain BER92_RS15405 PF07971 Glycosyl hydrolase family 92 BER92_RS15410 PF01301 Glycosyl hydrolases family 35 BER92_RS15455 PF02384 N-6 DNA Methylase BER92_RS15455 PF12161 HsdM N-terminal domain BER92_RS15475 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BER92_RS15475 PF18766 SWI2/SNF2 ATPase BER92_RS15475 PF11867 Domain of unknown function (DUF3387) BER92_RS15495 PF01527 Transposase BER92_RS15515 PF01066 CDP-alcohol phosphatidyltransferase BER92_RS15525 PF04073 Aminoacyl-tRNA editing domain BER92_RS15525 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BER92_RS15525 PF03129 Anticodon binding domain BER92_RS15540 PF02405 Permease MlaE BER92_RS15545 PF00005 ABC transporter BER92_RS15550 PF02470 MlaD protein BER92_RS15550 PF03886 ABC-type transport auxiliary lipoprotein component BER92_RS15570 PF14307 Glycosyltransferase WbsX BER92_RS15570 PF05045 Rhamnan synthesis protein F BER92_RS15575 PF01144 Coenzyme A transferase BER92_RS15580 PF01144 Coenzyme A transferase BER92_RS15585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BER92_RS15585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BER92_RS15585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BER92_RS15585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BER92_RS15590 PF00483 Nucleotidyl transferase BER92_RS15590 PF01050 Mannose-6-phosphate isomerase BER92_RS15595 PF04321 RmlD substrate binding domain BER92_RS15600 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BER92_RS15605 PF00483 Nucleotidyl transferase BER92_RS15610 PF16363 GDP-mannose 4,6 dehydratase BER92_RS15615 PF01012 Electron transfer flavoprotein domain BER92_RS15620 PF00766 Electron transfer flavoprotein FAD-binding domain BER92_RS15620 PF01012 Electron transfer flavoprotein domain BER92_RS15630 PF00535 Glycosyl transferase family 2 BER92_RS15650 PF01370 NAD dependent epimerase/dehydratase family BER92_RS15655 PF16363 GDP-mannose 4,6 dehydratase BER92_RS15675 PF00069 Protein kinase domain BER92_RS15675 PF13847 Methyltransferase domain BER92_RS15680 PF00005 ABC transporter BER92_RS15695 PF01053 Cys/Met metabolism PLP-dependent enzyme BER92_RS15700 PF00571 CBS domain BER92_RS15700 PF00291 Pyridoxal-phosphate dependent enzyme BER92_RS15720 PF00437 Type II/IV secretion system protein BER92_RS15730 PF14497 Glutathione S-transferase, C-terminal domain BER92_RS15730 PF02798 Glutathione S-transferase, N-terminal domain BER92_RS15740 PF00271 Helicase conserved C-terminal domain BER92_RS15740 PF00270 DEAD/DEAH box helicase BER92_RS15745 PF01242 6-pyruvoyl tetrahydropterin synthase BER92_RS15760 PF13185 GAF domain BER92_RS15775 PF05598 Transposase domain (DUF772) BER92_RS15775 PF01609 Transposase DDE domain BER92_RS15780 PF01527 Transposase BER92_RS15785 PF13419 Haloacid dehalogenase-like hydrolase BER92_RS15790 PF11799 impB/mucB/samB family C-terminal domain BER92_RS15790 PF00817 impB/mucB/samB family BER92_RS15800 PF07977 FabA-like domain BER92_RS15805 PF02801 Beta-ketoacyl synthase, C-terminal domain BER92_RS15805 PF00109 Beta-ketoacyl synthase, N-terminal domain BER92_RS15815 PF01432 Peptidase family M3 BER92_RS15830 PF07731 Multicopper oxidase BER92_RS15830 PF07732 Multicopper oxidase BER92_RS15830 PF00394 Multicopper oxidase BER92_RS15835 PF05275 Copper resistance protein B precursor (CopB) BER92_RS15840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BER92_RS15850 PF01380 SIS domain BER92_RS15865 PF00989 PAS fold BER92_RS15865 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS15865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS15875 PF12804 MobA-like NTP transferase domain BER92_RS15875 PF00132 Bacterial transferase hexapeptide (six repeats) BER92_RS15875 PF14602 Hexapeptide repeat of succinyl-transferase BER92_RS15885 PF01817 Chorismate mutase type II BER92_RS15890 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BER92_RS15890 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BER92_RS15895 PF02874 ATP synthase alpha/beta family, beta-barrel domain BER92_RS15895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER92_RS15900 PF00231 ATP synthase BER92_RS15905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER92_RS15905 PF02874 ATP synthase alpha/beta family, beta-barrel domain BER92_RS15905 PF00306 ATP synthase alpha/beta chain, C terminal domain BER92_RS15910 PF00213 ATP synthase delta (OSCP) subunit BER92_RS15915 PF00430 ATP synthase B/B' CF(0) BER92_RS15920 PF00137 ATP synthase subunit C BER92_RS15925 PF00119 ATP synthase A chain BER92_RS15940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER92_RS15940 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER92_RS15945 PF00364 Biotin-requiring enzyme BER92_RS15945 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BER92_RS15945 PF02817 e3 binding domain BER92_RS15970 PF03180 NLPA lipoprotein BER92_RS15975 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS15980 PF09383 NIL domain BER92_RS15980 PF00005 ABC transporter BER92_RS15985 PF04461 Protein of unknown function (DUF520) BER92_RS16020 PF01609 Transposase DDE domain BER92_RS16030 PF00849 RNA pseudouridylate synthase BER92_RS16030 PF01479 S4 domain BER92_RS16035 PF05175 Methyltransferase small domain BER92_RS16035 PF08468 Methyltransferase small domain N-terminal BER92_RS16045 PF07995 Glucose / Sorbosone dehydrogenase BER92_RS16055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS16055 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS16055 PF00989 PAS fold BER92_RS16075 PF00842 Alanine racemase, C-terminal domain BER92_RS16075 PF01168 Alanine racemase, N-terminal domain BER92_RS16080 PF01266 FAD dependent oxidoreductase BER92_RS16085 PF01037 Lrp/AsnC ligand binding domain BER92_RS16095 PF01641 SelR domain BER92_RS16100 PF01618 MotA/TolQ/ExbB proton channel family BER92_RS16105 PF00691 OmpA family BER92_RS16105 PF13677 Membrane MotB of proton-channel complex MotA/MotB BER92_RS16175 PF12627 Probable RNA and SrmB- binding site of polymerase A BER92_RS16175 PF01743 Poly A polymerase head domain BER92_RS16175 PF01966 HD domain BER92_RS16185 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BER92_RS16185 PF01464 Transglycosylase SLT domain BER92_RS16200 PF05598 Transposase domain (DUF772) BER92_RS16205 PF13683 Integrase core domain BER92_RS16205 PF13276 HTH-like domain BER92_RS16255 PF01220 Dehydroquinase class II BER92_RS16260 PF00364 Biotin-requiring enzyme BER92_RS16270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BER92_RS16270 PF00289 Biotin carboxylase, N-terminal domain BER92_RS16270 PF02785 Biotin carboxylase C-terminal domain BER92_RS16285 PF01381 Helix-turn-helix BER92_RS16295 PF02954 Bacterial regulatory protein, Fis family BER92_RS16300 PF00818 Ice nucleation protein repeat BER92_RS16300 PF00818 Ice nucleation protein repeat BER92_RS16305 PF02142 MGS-like domain BER92_RS16305 PF01808 AICARFT/IMPCHase bienzyme BER92_RS16310 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BER92_RS16310 PF02844 Phosphoribosylglycinamide synthetase, N domain BER92_RS16310 PF02843 Phosphoribosylglycinamide synthetase, C domain BER92_RS16315 PF12805 FUSC-like inner membrane protein yccS BER92_RS16320 PF07690 Major Facilitator Superfamily BER92_RS16335 PF07690 Major Facilitator Superfamily BER92_RS16350 PF17113 Regulatory signalling modulator protein AmpE BER92_RS16350 PF03186 CobD/Cbib protein BER92_RS16355 PF09297 NADH pyrophosphatase zinc ribbon domain BER92_RS16355 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BER92_RS16355 PF00293 NUDIX domain BER92_RS16365 PF05598 Transposase domain (DUF772) BER92_RS16365 PF01609 Transposase DDE domain BER92_RS16375 PF01527 Transposase BER92_RS16380 PF00665 Integrase core domain BER92_RS16380 PF13333 Integrase core domain BER92_RS16380 PF13276 HTH-like domain BER92_RS16410 PF01717 Cobalamin-independent synthase, Catalytic domain BER92_RS16410 PF08267 Cobalamin-independent synthase, N-terminal domain BER92_RS16420 PF05368 NmrA-like family BER92_RS16425 PF01638 HxlR-like helix-turn-helix BER92_RS16430 PF00920 Dehydratase family BER92_RS16435 PF00132 Bacterial transferase hexapeptide (six repeats) BER92_RS16450 PF01527 Transposase BER92_RS16455 PF13276 HTH-like domain BER92_RS16455 PF13333 Integrase core domain BER92_RS16455 PF00665 Integrase core domain BER92_RS16465 PF05598 Transposase domain (DUF772) BER92_RS16465 PF01609 Transposase DDE domain BER92_RS16470 PF00873 AcrB/AcrD/AcrF family BER92_RS16475 PF00873 AcrB/AcrD/AcrF family BER92_RS16485 PF00551 Formyl transferase BER92_RS16490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BER92_RS16495 PF02146 Sir2 family BER92_RS16505 PF07690 Major Facilitator Superfamily BER92_RS16510 PF01026 TatD related DNase BER92_RS16515 PF07308 Protein of unknown function (DUF1456) BER92_RS16525 PF08482 ATP-dependent helicase C-terminal BER92_RS16525 PF04408 Helicase associated domain (HA2) BER92_RS16525 PF00270 DEAD/DEAH box helicase BER92_RS16525 PF00271 Helicase conserved C-terminal domain BER92_RS16540 PF05598 Transposase domain (DUF772) BER92_RS16545 PF00849 RNA pseudouridylate synthase BER92_RS16555 PF00248 Aldo/keto reductase family BER92_RS16560 PF16884 N-terminal domain of oxidoreductase BER92_RS16560 PF00107 Zinc-binding dehydrogenase BER92_RS16565 PF00248 Aldo/keto reductase family BER92_RS16575 PF02566 OsmC-like protein BER92_RS16585 PF03969 AFG1-like ATPase BER92_RS16630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER92_RS16630 PF02770 Acyl-CoA dehydrogenase, middle domain BER92_RS16630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER92_RS16635 PF01039 Carboxyl transferase domain BER92_RS16640 PF00289 Biotin carboxylase, N-terminal domain BER92_RS16640 PF00364 Biotin-requiring enzyme BER92_RS16640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BER92_RS16640 PF02785 Biotin carboxylase C-terminal domain BER92_RS16640 PF18140 Propionyl-coenzyme A carboxylase BT domain BER92_RS16650 PF01867 CRISPR associated protein Cas1 BER92_RS16655 PF18019 HD domain BER92_RS16660 PF09611 CRISPR-associated protein (Cas_Csy1) BER92_RS16665 PF09614 CRISPR-associated protein (Cas_Csy2) BER92_RS16670 PF09615 CRISPR-associated protein (Cas_Csy3) BER92_RS16675 PF09618 CRISPR-associated protein (Cas_Csy4) BER92_RS16680 PF13276 HTH-like domain BER92_RS16680 PF00665 Integrase core domain BER92_RS16680 PF13333 Integrase core domain BER92_RS16685 PF13276 HTH-like domain BER92_RS16685 PF13333 Integrase core domain BER92_RS16685 PF00665 Integrase core domain BER92_RS16690 PF01527 Transposase BER92_RS16700 PF00873 AcrB/AcrD/AcrF family BER92_RS16705 PF00529 HlyD membrane-fusion protein of T1SS BER92_RS16705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BER92_RS16710 PF00009 Elongation factor Tu GTP binding domain BER92_RS16715 PF01507 Phosphoadenosine phosphosulfate reductase family BER92_RS16720 PF00175 Oxidoreductase NAD-binding domain BER92_RS16720 PF00258 Flavodoxin BER92_RS16720 PF00667 FAD binding domain BER92_RS16725 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BER92_RS16725 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BER92_RS16730 PF01507 Phosphoadenosine phosphosulfate reductase family BER92_RS16740 PF00593 TonB dependent receptor BER92_RS16740 PF07715 TonB-dependent Receptor Plug Domain BER92_RS16750 PF00072 Response regulator receiver domain BER92_RS16750 PF01627 Hpt domain BER92_RS16750 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS16750 PF00672 HAMP domain BER92_RS16750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS16760 PF03466 LysR substrate binding domain BER92_RS16760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER92_RS16765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BER92_RS16765 PF14824 Sirohaem biosynthesis protein central BER92_RS16765 PF10414 Sirohaem synthase dimerisation region BER92_RS16770 PF00291 Pyridoxal-phosphate dependent enzyme BER92_RS16775 PF01661 Macro domain BER92_RS16780 PF00274 Fructose-bisphosphate aldolase class-I BER92_RS16785 PF00224 Pyruvate kinase, barrel domain BER92_RS16785 PF02887 Pyruvate kinase, alpha/beta domain BER92_RS16790 PF13419 Haloacid dehalogenase-like hydrolase BER92_RS16795 PF00162 Phosphoglycerate kinase BER92_RS16820 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS16820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS16820 PF00672 HAMP domain BER92_RS16820 PF16527 Two-component sensor protein CpxA, periplasmic domain BER92_RS16825 PF00266 Aminotransferase class-V BER92_RS16860 PF01527 Transposase BER92_RS16865 PF00665 Integrase core domain BER92_RS16865 PF13333 Integrase core domain BER92_RS16865 PF13276 HTH-like domain BER92_RS16875 PF01609 Transposase DDE domain BER92_RS16875 PF05598 Transposase domain (DUF772) BER92_RS16890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BER92_RS16890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BER92_RS16905 PF04273 Putative phosphatase (DUF442) BER92_RS16905 PF00753 Metallo-beta-lactamase superfamily BER92_RS16915 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS16920 PF03459 TOBE domain BER92_RS16920 PF00005 ABC transporter BER92_RS16935 PF03965 Penicillinase repressor BER92_RS16945 PF03734 L,D-transpeptidase catalytic domain BER92_RS16945 PF01476 LysM domain BER92_RS16950 PF01464 Transglycosylase SLT domain BER92_RS16950 PF10145 Phage-related minor tail protein BER92_RS16950 PF01551 Peptidase family M23 BER92_RS16955 PF07715 TonB-dependent Receptor Plug Domain BER92_RS16955 PF00593 TonB dependent receptor BER92_RS16960 PF02779 Transketolase, pyrimidine binding domain BER92_RS16960 PF02780 Transketolase, C-terminal domain BER92_RS16960 PF00456 Transketolase, thiamine diphosphate binding domain BER92_RS16965 PF00375 Sodium:dicarboxylate symporter family BER92_RS16975 PF13519 von Willebrand factor type A domain BER92_RS16995 PF07726 ATPase family associated with various cellular activities (AAA) BER92_RS16995 PF17863 AAA lid domain BER92_RS17020 PF01609 Transposase DDE domain BER92_RS17020 PF05598 Transposase domain (DUF772) BER92_RS17035 PF00999 Sodium/hydrogen exchanger family BER92_RS17055 PF01609 Transposase DDE domain BER92_RS17060 PF02469 Fasciclin domain BER92_RS17065 PF03167 Uracil DNA glycosylase superfamily BER92_RS17075 PF00248 Aldo/keto reductase family BER92_RS17085 PF01431 Peptidase family M13 BER92_RS17085 PF05649 Peptidase family M13 BER92_RS17100 PF13520 Amino acid permease BER92_RS17115 PF05974 Domain of unknown function (DUF892) BER92_RS17120 PF05067 Manganese containing catalase BER92_RS17135 PF01339 CheB methylesterase BER92_RS17135 PF08448 PAS fold BER92_RS17135 PF03705 CheR methyltransferase, all-alpha domain BER92_RS17135 PF01739 CheR methyltransferase, SAM binding domain BER92_RS17150 PF02954 Bacterial regulatory protein, Fis family BER92_RS17150 PF00072 Response regulator receiver domain BER92_RS17150 PF00158 Sigma-54 interaction domain BER92_RS17180 PF16363 GDP-mannose 4,6 dehydratase BER92_RS17190 PF03275 UDP-galactopyranose mutase BER92_RS17200 PF00664 ABC transporter transmembrane region BER92_RS17200 PF00005 ABC transporter BER92_RS17215 PF08240 Alcohol dehydrogenase GroES-like domain BER92_RS17215 PF13823 Alcohol dehydrogenase GroES-associated BER92_RS17215 PF00107 Zinc-binding dehydrogenase BER92_RS17255 PF07715 TonB-dependent Receptor Plug Domain BER92_RS17255 PF00593 TonB dependent receptor BER92_RS17270 PF00005 ABC transporter BER92_RS17300 PF01740 STAS domain BER92_RS17300 PF00916 Sulfate permease family BER92_RS17325 PF01527 Transposase BER92_RS17345 PF00456 Transketolase, thiamine diphosphate binding domain BER92_RS17345 PF17831 Pyruvate dehydrogenase E1 component middle domain BER92_RS17390 PF00550 Phosphopantetheine attachment site BER92_RS17390 PF08659 KR domain BER92_RS17390 PF02801 Beta-ketoacyl synthase, C-terminal domain BER92_RS17390 PF00109 Beta-ketoacyl synthase, N-terminal domain BER92_RS17390 PF16197 Ketoacyl-synthetase C-terminal extension BER92_RS17390 PF00698 Acyl transferase domain BER92_RS17395 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BER92_RS17400 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BER92_RS17410 PF01039 Carboxyl transferase domain BER92_RS17415 PF06857 Malonate decarboxylase delta subunit (MdcD) BER92_RS17430 PF13006 Insertion element 4 transposase N-terminal BER92_RS17430 PF01609 Transposase DDE domain BER92_RS17435 PF04264 YceI-like domain BER92_RS17440 PF00881 Nitroreductase family BER92_RS17450 PF02592 Putative vitamin uptake transporter BER92_RS17455 PF03710 Glutamate-ammonia ligase adenylyltransferase BER92_RS17455 PF08335 GlnD PII-uridylyltransferase BER92_RS17465 PF08450 SMP-30/Gluconolactonase/LRE-like region BER92_RS17475 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BER92_RS17475 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BER92_RS17485 PF00793 DAHP synthetase I family BER92_RS17500 PF01609 Transposase DDE domain BER92_RS17500 PF13006 Insertion element 4 transposase N-terminal BER92_RS17505 PF00118 TCP-1/cpn60 chaperonin family BER92_RS17510 PF00166 Chaperonin 10 Kd subunit BER92_RS17525 PF03091 CutA1 divalent ion tolerance protein BER92_RS17530 PF02683 Cytochrome C biogenesis protein transmembrane region BER92_RS17530 PF11412 Disulphide bond corrector protein DsbC BER92_RS17545 PF05598 Transposase domain (DUF772) BER92_RS17560 PF00665 Integrase core domain BER92_RS17560 PF13333 Integrase core domain BER92_RS17560 PF13276 HTH-like domain BER92_RS17565 PF01527 Transposase BER92_RS17570 PF13460 NAD(P)H-binding BER92_RS17575 PF00128 Alpha amylase, catalytic domain BER92_RS17575 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER92_RS17585 PF00128 Alpha amylase, catalytic domain BER92_RS17590 PF02446 4-alpha-glucanotransferase BER92_RS17595 PF00128 Alpha amylase, catalytic domain BER92_RS17595 PF11941 Domain of unknown function (DUF3459) BER92_RS17595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER92_RS17600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER92_RS17600 PF00128 Alpha amylase, catalytic domain BER92_RS17600 PF02806 Alpha amylase, C-terminal all-beta domain BER92_RS17605 PF08323 Starch synthase catalytic domain BER92_RS17605 PF00534 Glycosyl transferases group 1 BER92_RS17610 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS17615 PF02638 Glycosyl hydrolase-like 10 BER92_RS17620 PF05661 Protein of unknown function (DUF808) BER92_RS17625 PF03109 ABC1 family BER92_RS17630 PF12794 Mechanosensitive ion channel inner membrane domain 1 BER92_RS17630 PF00924 Mechanosensitive ion channel BER92_RS17630 PF12795 Mechanosensitive ion channel porin domain BER92_RS17645 PF01040 UbiA prenyltransferase family BER92_RS17655 PF04055 Radical SAM superfamily BER92_RS17655 PF06968 Biotin and Thiamin Synthesis associated domain BER92_RS17660 PF00155 Aminotransferase class I and II BER92_RS17670 PF12697 Alpha/beta hydrolase family BER92_RS17685 PF13649 Methyltransferase domain BER92_RS17705 PF00291 Pyridoxal-phosphate dependent enzyme BER92_RS17715 PF01134 Glucose inhibited division protein A BER92_RS17715 PF13932 GidA associated domain BER92_RS17740 PF08220 DeoR-like helix-turn-helix domain BER92_RS17740 PF00455 DeoR C terminal sensor domain BER92_RS17745 PF01266 FAD dependent oxidoreductase BER92_RS17745 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BER92_RS17750 PF00230 Major intrinsic protein BER92_RS17755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BER92_RS17755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BER92_RS17765 PF01527 Transposase BER92_RS17780 PF01432 Peptidase family M3 BER92_RS17795 PF00472 RF-1 domain BER92_RS17825 PF03109 ABC1 family BER92_RS17845 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BER92_RS17850 PF00501 AMP-binding enzyme BER92_RS17855 PF03692 Putative zinc- or iron-chelating domain BER92_RS17860 PF00561 alpha/beta hydrolase fold BER92_RS17880 PF01521 Iron-sulphur cluster biosynthesis BER92_RS17900 PF00563 EAL domain BER92_RS17900 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS17900 PF03707 Bacterial signalling protein N terminal repeat BER92_RS17905 PF00672 HAMP domain BER92_RS17905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS17905 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS17905 PF01627 Hpt domain BER92_RS17905 PF00072 Response regulator receiver domain BER92_RS17905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BER92_RS17910 PF00210 Ferritin-like domain BER92_RS17920 PF00293 NUDIX domain BER92_RS17935 PF00380 Ribosomal protein S9/S16 BER92_RS17940 PF00572 Ribosomal protein L13 BER92_RS17945 PF03232 Ubiquinone biosynthesis protein COQ7 BER92_RS17950 PF00893 Small Multidrug Resistance protein BER92_RS17955 PF02675 S-adenosylmethionine decarboxylase BER92_RS17960 PF00027 Cyclic nucleotide-binding domain BER92_RS17960 PF00325 Bacterial regulatory proteins, crp family BER92_RS17970 PF00218 Indole-3-glycerol phosphate synthase BER92_RS17975 PF00591 Glycosyl transferase family, a/b domain BER92_RS17975 PF02885 Glycosyl transferase family, helical bundle domain BER92_RS17985 PF00117 Glutamine amidotransferase class-I BER92_RS18005 PF00266 Aminotransferase class-V BER92_RS18010 PF01053 Cys/Met metabolism PLP-dependent enzyme BER92_RS18030 PF04204 Homoserine O-succinyltransferase BER92_RS18035 PF00120 Glutamine synthetase, catalytic domain BER92_RS18040 PF00425 chorismate binding enzyme BER92_RS18040 PF04715 Anthranilate synthase component I, N terminal region BER92_RS18045 PF00781 Diacylglycerol kinase catalytic domain BER92_RS18050 PF00583 Acetyltransferase (GNAT) family BER92_RS18055 PF00834 Ribulose-phosphate 3 epimerase family BER92_RS18065 PF05099 Tellurite resistance protein TerB BER92_RS18065 PF00226 DnaJ domain BER92_RS18070 PF01259 SAICAR synthetase BER92_RS18105 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BER92_RS18105 PF00361 Proton-conducting membrane transporter BER92_RS18105 PF13244 Domain of unknown function (DUF4040) BER92_RS18105 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BER92_RS18110 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BER92_RS18115 PF00361 Proton-conducting membrane transporter BER92_RS18125 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BER92_RS18130 PF03334 Na+/H+ antiporter subunit BER92_RS18135 PF01609 Transposase DDE domain BER92_RS18135 PF05598 Transposase domain (DUF772) BER92_RS18165 PF01427 D-ala-D-ala dipeptidase BER92_RS18170 PF01510 N-acetylmuramoyl-L-alanine amidase BER92_RS18180 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BER92_RS18180 PF13378 Enolase C-terminal domain-like BER92_RS18190 PF13520 Amino acid permease BER92_RS18210 PF07995 Glucose / Sorbosone dehydrogenase BER92_RS18215 PF00933 Glycosyl hydrolase family 3 N terminal domain BER92_RS18215 PF14310 Fibronectin type III-like domain BER92_RS18215 PF01915 Glycosyl hydrolase family 3 C-terminal domain BER92_RS18220 PF02152 Dihydroneopterin aldolase BER92_RS18225 PF00814 Glycoprotease family BER92_RS18230 PF01165 Ribosomal protein S21 BER92_RS18240 PF03631 Virulence factor BrkB BER92_RS18245 PF01807 CHC2 zinc finger BER92_RS18245 PF08275 DNA primase catalytic core, N-terminal domain BER92_RS18245 PF08278 DNA primase DnaG DnaB-binding BER92_RS18245 PF10410 DnaB-helicase binding domain of primase BER92_RS18250 PF13593 SBF-like CPA transporter family (DUF4137) BER92_RS18260 PF01040 UbiA prenyltransferase family BER92_RS18285 PF00510 Cytochrome c oxidase subunit III BER92_RS18290 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BER92_RS18295 PF00115 Cytochrome C and Quinol oxidase polypeptide I BER92_RS18300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BER92_RS18300 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BER92_RS18315 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BER92_RS18315 PF01619 Proline dehydrogenase BER92_RS18315 PF14850 DNA-binding domain of Proline dehydrogenase BER92_RS18315 PF00171 Aldehyde dehydrogenase family BER92_RS18320 PF00579 tRNA synthetases class I (W and Y) BER92_RS18325 PF04225 Opacity-associated protein A LysM-like domain BER92_RS18325 PF01551 Peptidase family M23 BER92_RS18330 PF03702 Anhydro-N-acetylmuramic acid kinase BER92_RS18340 PF07690 Major Facilitator Superfamily BER92_RS18350 PF03372 Endonuclease/Exonuclease/phosphatase family BER92_RS18355 PF00156 Phosphoribosyl transferase domain BER92_RS18365 PF13614 AAA domain BER92_RS18370 PF02195 ParB-like nuclease domain BER92_RS18370 PF17762 HTH domain found in ParB protein BER92_RS18385 PF01370 NAD dependent epimerase/dehydratase family BER92_RS18390 PF00535 Glycosyl transferase family 2 BER92_RS18405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BER92_RS18405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BER92_RS18405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BER92_RS18405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BER92_RS18410 PF00692 dUTPase BER92_RS18415 PF02441 Flavoprotein BER92_RS18415 PF04127 DNA / pantothenate metabolism flavoprotein BER92_RS18420 PF04002 RadC-like JAB domain BER92_RS18425 PF00750 tRNA synthetases class I (R) BER92_RS18425 PF05746 DALR anticodon binding domain BER92_RS18425 PF03485 Arginyl tRNA synthetase N terminal domain BER92_RS18435 PF00106 short chain dehydrogenase BER92_RS18465 PF03033 Glycosyltransferase family 28 N-terminal domain BER92_RS18470 PF00550 Phosphopantetheine attachment site BER92_RS18470 PF13193 AMP-binding enzyme C-terminal domain BER92_RS18470 PF00668 Condensation domain BER92_RS18470 PF00501 AMP-binding enzyme BER92_RS18470 PF00975 Thioesterase domain BER92_RS18475 PF05598 Transposase domain (DUF772) BER92_RS18480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS18485 PF00486 Transcriptional regulatory protein, C terminal BER92_RS18485 PF00072 Response regulator receiver domain BER92_RS18495 PF01207 Dihydrouridine synthase (Dus) BER92_RS18515 PF06628 Catalase-related immune-responsive BER92_RS18515 PF00199 Catalase BER92_RS18520 PF13307 Helicase C-terminal domain BER92_RS18520 PF06733 DEAD_2 BER92_RS18530 PF01488 Shikimate / quinate 5-dehydrogenase BER92_RS18530 PF08501 Shikimate dehydrogenase substrate binding domain BER92_RS18530 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BER92_RS18540 PF00667 FAD binding domain BER92_RS18540 PF00175 Oxidoreductase NAD-binding domain BER92_RS18540 PF00258 Flavodoxin BER92_RS18545 PF00490 Delta-aminolevulinic acid dehydratase BER92_RS18560 PF05598 Transposase domain (DUF772) BER92_RS18585 PF02673 Bacitracin resistance protein BacA BER92_RS18590 PF03951 Glutamine synthetase, beta-Grasp domain BER92_RS18590 PF00120 Glutamine synthetase, catalytic domain BER92_RS18595 PF00543 Nitrogen regulatory protein P-II BER92_RS18600 PF00909 Ammonium Transporter Family BER92_RS18605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER92_RS18605 PF00512 His Kinase A (phospho-acceptor) domain BER92_RS18605 PF00989 PAS fold BER92_RS18610 PF02954 Bacterial regulatory protein, Fis family BER92_RS18610 PF00072 Response regulator receiver domain BER92_RS18610 PF00158 Sigma-54 interaction domain BER92_RS18615 PF00080 Copper/zinc superoxide dismutase (SODC) BER92_RS18620 PF00080 Copper/zinc superoxide dismutase (SODC) BER92_RS18630 PF13340 Putative transposase of IS4/5 family (DUF4096) BER92_RS18650 PF01553 Acyltransferase BER92_RS18655 PF03061 Thioesterase superfamily BER92_RS18660 PF13091 PLD-like domain BER92_RS18675 PF10609 NUBPL iron-transfer P-loop NTPase BER92_RS18675 PF01883 Iron-sulfur cluster assembly protein BER92_RS18710 PF12867 DinB superfamily BER92_RS18710 PF03781 Sulfatase-modifying factor enzyme 1 BER92_RS18720 PF00528 Binding-protein-dependent transport system inner membrane component BER92_RS18725 PF00005 ABC transporter BER92_RS18735 PF00005 ABC transporter BER92_RS18740 PF01037 Lrp/AsnC ligand binding domain BER92_RS18745 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BER92_RS18755 PF04962 KduI/IolB family BER92_RS18765 PF00356 Bacterial regulatory proteins, lacI family BER92_RS18780 PF03480 Bacterial extracellular solute-binding protein, family 7 BER92_RS18790 PF13472 GDSL-like Lipase/Acylhydrolase family BER92_RS18790 PF07859 alpha/beta hydrolase fold BER92_RS18795 PF00135 Carboxylesterase family BER92_RS18800 PF00248 Aldo/keto reductase family BER92_RS18805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER92_RS18805 PF02806 Alpha amylase, C-terminal all-beta domain BER92_RS18805 PF00128 Alpha amylase, catalytic domain BER92_RS18810 PF00128 Alpha amylase, catalytic domain BER92_RS18810 PF16657 Maltogenic Amylase, C-terminal domain BER92_RS18815 PF11896 Domain of unknown function (DUF3416) BER92_RS18815 PF00128 Alpha amylase, catalytic domain BER92_RS18870 PF01609 Transposase DDE domain BER92_RS18875 PF13340 Putative transposase of IS4/5 family (DUF4096) BER92_RS18885 PF00150 Cellulase (glycosyl hydrolase family 5) BER92_RS18895 PF00150 Cellulase (glycosyl hydrolase family 5) BER92_RS18900 PF08240 Alcohol dehydrogenase GroES-like domain BER92_RS18900 PF00107 Zinc-binding dehydrogenase BER92_RS18905 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BER92_RS18905 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER92_RS18910 PF01493 GXGXG motif BER92_RS18910 PF01645 Conserved region in glutamate synthase BER92_RS18910 PF04898 Glutamate synthase central domain BER92_RS18910 PF00310 Glutamine amidotransferases class-II BER92_RS18925 PF02092 Glycyl-tRNA synthetase beta subunit BER92_RS18925 PF05746 DALR anticodon binding domain BER92_RS18930 PF02091 Glycyl-tRNA synthetase alpha subunit BER92_RS18935 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BER92_RS18935 PF00437 Type II/IV secretion system protein BER92_RS18940 PF00958 GMP synthase C terminal domain BER92_RS18940 PF00117 Glutamine amidotransferase class-I BER92_RS18950 PF00902 Sec-independent protein translocase protein (TatC) BER92_RS18955 PF02416 mttA/Hcf106 family BER92_RS18960 PF02416 mttA/Hcf106 family BER92_RS18970 PF00762 Ferrochelatase BER92_RS18975 PF12697 Alpha/beta hydrolase family BER92_RS18985 PF04381 Putative exonuclease, RdgC BER92_RS18990 PF01171 PP-loop family BER92_RS18995 PF00356 Bacterial regulatory proteins, lacI family BER92_RS19000 PF03648 Glycosyl hydrolase family 67 N-terminus BER92_RS19000 PF07477 Glycosyl hydrolase family 67 C-terminus BER92_RS19000 PF07488 Glycosyl hydrolase family 67 middle domain BER92_RS19025 PF00665 Integrase core domain BER92_RS19025 PF13276 HTH-like domain BER92_RS19025 PF13333 Integrase core domain BER92_RS19030 PF01527 Transposase BER92_RS19055 PF01126 Heme oxygenase BER92_RS19070 PF01263 Aldose 1-epimerase BER92_RS19080 PF02810 SEC-C motif BER92_RS19085 PF01925 Sulfite exporter TauE/SafE BER92_RS19125 PF01227 GTP cyclohydrolase I BER92_RS19130 PF00083 Sugar (and other) transporter BER92_RS19155 PF13683 Integrase core domain BER92_RS19155 PF13276 HTH-like domain BER92_RS19160 PF01609 Transposase DDE domain BER92_RS19160 PF05598 Transposase domain (DUF772) BER92_RS19165 PF05598 Transposase domain (DUF772) BER92_RS19175 PF01381 Helix-turn-helix BER92_RS19180 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BER92_RS19185 PF13538 UvrD-like helicase C-terminal domain BER92_RS19190 PF12705 PD-(D/E)XK nuclease superfamily BER92_RS19190 PF00580 UvrD/REP helicase N-terminal domain BER92_RS19190 PF13361 UvrD-like helicase C-terminal domain BER92_RS19195 PF17946 RecC C-terminal domain BER92_RS19200 PF00005 ABC transporter BER92_RS19205 PF02405 Permease MlaE BER92_RS19210 PF02470 MlaD protein BER92_RS19215 PF05494 MlaC protein BER92_RS19225 PF04333 MlaA lipoprotein BER92_RS19235 PF00255 Glutathione peroxidase BER92_RS19245 PF02646 RmuC family BER92_RS19255 PF13520 Amino acid permease BER92_RS19265 PF00990 Diguanylate cyclase, GGDEF domain BER92_RS19270 PF02595 Glycerate kinase family BER92_RS19275 PF07690 Major Facilitator Superfamily BER92_RS19285 PF10672 S-adenosylmethionine-dependent methyltransferase BER92_RS19285 PF17785 PUA-like domain BER92_RS19290 PF03741 Integral membrane protein TerC family BER92_RS19295 PF03009 Glycerophosphoryl diester phosphodiesterase family BER92_RS19300 PF01527 Transposase BER92_RS19310 PF10396 GTP-binding protein TrmE N-terminus BER92_RS19310 PF01926 50S ribosome-binding GTPase BER92_RS19310 PF12631 MnmE helical domain BER92_RS19315 PF02096 60Kd inner membrane protein BER92_RS19315 PF14849 YidC periplasmic domain BER92_RS19320 PF00825 Ribonuclease P BER92_RS19325 PF00468 Ribosomal protein L34 BER92_RS19505 PF00308 Bacterial dnaA protein BER92_RS19505 PF11638 DnaA N-terminal domain BER92_RS19505 PF08299 Bacterial dnaA protein helix-turn-helix BER92_RS19540 PF02463 RecF/RecN/SMC N terminal domain BER92_RS19600 PF02472 Biopolymer transport protein ExbD/TolR