BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 277 337 6.3E-16 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 PANTHER PTHR22617:SF20 1 659 1.3E-233 T 16-09-2016 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 SMART SM00073 4 102 3.8E-29 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 SUPERFAMILY SSF50341 523 655 1.28E-31 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 521 3.3E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 478 3.3E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 502 3.3E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 443 3.3E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 SMART SM00260 516 655 3.3E-33 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Gene3D G3DSA:2.30.30.40 524 545 7.3E-23 T 16-09-2016 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Gene3D G3DSA:2.30.30.40 611 654 7.3E-23 T 16-09-2016 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Gene3D G3DSA:1.10.287.560 276 340 1.6E-19 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 SUPERFAMILY SSF47384 277 340 5.49E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Gene3D G3DSA:1.20.120.160 2 144 1.4E-39 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Gene3D G3DSA:3.30.565.10 341 523 8.4E-34 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 SMART SM01231 276 339 2.1E-18 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 387 523 4.9E-16 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 SUPERFAMILY SSF55874 341 522 7.47E-38 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 SMART SM00387 384 524 3.6E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Gene3D G3DSA:2.40.50.180 548 610 7.5E-11 T 16-09-2016 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Pfam PF01584 CheW-like domain 529 658 8.4E-27 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 Pfam PF01627 Hpt domain 10 100 2.8E-18 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 PANTHER PTHR22617 1 659 1.3E-233 T 16-09-2016 BER92_RS09540 2396bbddf546fd801b91c756840622e1 664 SUPERFAMILY SSF47226 5 129 1.7E-31 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS11170 4df5bb3f68aa63fd3c60d28fe29dec9c 92 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 9.7E-30 T 16-09-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BER92_RS11170 4df5bb3f68aa63fd3c60d28fe29dec9c 92 SUPERFAMILY SSF50182 7 68 6.93E-24 T 16-09-2016 IPR010920 LSM domain BER92_RS11170 4df5bb3f68aa63fd3c60d28fe29dec9c 92 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.333 T 16-09-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BER92_RS11170 4df5bb3f68aa63fd3c60d28fe29dec9c 92 PANTHER PTHR34772 1 92 1.5E-40 T 16-09-2016 BER92_RS11170 4df5bb3f68aa63fd3c60d28fe29dec9c 92 Gene3D G3DSA:2.30.30.100 1 69 4.8E-37 T 16-09-2016 BER92_RS11170 4df5bb3f68aa63fd3c60d28fe29dec9c 92 PANTHER PTHR34772:SF1 1 92 1.5E-40 T 16-09-2016 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 TIGRFAM TIGR02063 RNase_R: ribonuclease R 119 815 1.5E-256 T 16-09-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 PANTHER PTHR23355 104 817 1.7E-246 T 16-09-2016 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 SUPERFAMILY SSF50249 735 814 1.72E-18 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 Pfam PF08206 Ribonuclease B OB domain 185 242 3.2E-22 T 16-09-2016 IPR013223 Ribonuclease B, N-terminal OB domain BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 SUPERFAMILY SSF50249 323 732 1.71E-135 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 Gene3D G3DSA:2.40.50.140 736 815 1.2E-17 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 PANTHER PTHR23355:SF9 104 817 1.7E-246 T 16-09-2016 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 SMART SM00316 732 815 3.4E-11 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 SUPERFAMILY SSF50249 165 245 1.22E-16 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 Pfam PF00773 RNB domain 358 685 5.9E-101 T 16-09-2016 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 SMART SM00357 184 244 2.8E-12 T 16-09-2016 IPR011129 Cold shock protein GO:0003676 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 Hamap MF_01895 Ribonuclease R [rnr]. 138 815 56.303 T 16-09-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 Pfam PF00575 S1 RNA binding domain 733 812 6.1E-11 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 174 814 4.2E-206 T 16-09-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 Gene3D G3DSA:1.10.10.10 121 150 6.3E-4 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 SMART SM00955 358 686 1.4E-170 T 16-09-2016 BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 ProSitePatterns PS01175 Ribonuclease II family signature. 653 677 - T 16-09-2016 IPR022966 Ribonuclease II/R, conserved site BER92_RS08210 861ebc340cb5c939c5e62c7207b390e9 840 SUPERFAMILY SSF50249 236 335 3.08E-11 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS17250 63774fce15a6a1105d9df756c3707d21 223 Pfam PF11445 Protein of unknown function (DUF2894) 12 195 8.9E-61 T 16-09-2016 IPR021549 Protein of unknown function DUF2894 BER92_RS05020 cf9cee559888ef86cb50f79ae68b9643 568 SMART SM00028 57 90 30.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS05020 cf9cee559888ef86cb50f79ae68b9643 568 SMART SM00028 91 124 59.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS05020 cf9cee559888ef86cb50f79ae68b9643 568 SMART SM00028 23 56 48.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS05020 cf9cee559888ef86cb50f79ae68b9643 568 Pfam PF13844 Glycosyl transferase family 41 206 357 2.0E-30 T 16-09-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 BER92_RS05020 cf9cee559888ef86cb50f79ae68b9643 568 Pfam PF13844 Glycosyl transferase family 41 367 556 8.4E-43 T 16-09-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 BER92_RS05020 cf9cee559888ef86cb50f79ae68b9643 568 PANTHER PTHR23083 9 131 9.0E-14 T 16-09-2016 BER92_RS05020 cf9cee559888ef86cb50f79ae68b9643 568 Gene3D G3DSA:1.25.40.10 12 137 9.5E-20 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS05020 cf9cee559888ef86cb50f79ae68b9643 568 SUPERFAMILY SSF48452 11 136 5.36E-18 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS05020 cf9cee559888ef86cb50f79ae68b9643 568 SUPERFAMILY SSF53756 207 556 2.42E-9 T 16-09-2016 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 Gene3D G3DSA:3.40.30.10 3 111 4.7E-33 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 TIGRFAM TIGR01068 thioredoxin: thioredoxin 14 110 1.2E-30 T 16-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 Pfam PF00085 Thioredoxin 8 111 3.7E-27 T 16-09-2016 IPR013766 Thioredoxin domain GO:0045454 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 PANTHER PTHR10438:SF281 161 179 1.8E-57 T 16-09-2016 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 PANTHER PTHR10438:SF281 6 114 1.8E-57 T 16-09-2016 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 SUPERFAMILY SSF52833 6 111 6.67E-34 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 ProSitePatterns PS00194 Thioredoxin family active site. 29 47 - T 16-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 Pfam PF14559 Tetratricopeptide repeat 135 192 2.0E-7 T 16-09-2016 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 PANTHER PTHR10438 161 179 1.8E-57 T 16-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 PANTHER PTHR10438 6 114 1.8E-57 T 16-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 PRINTS PR00421 Thioredoxin family signature 36 45 1.7E-6 T 16-09-2016 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 PRINTS PR00421 Thioredoxin family signature 28 36 1.7E-6 T 16-09-2016 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 PRINTS PR00421 Thioredoxin family signature 76 87 1.7E-6 T 16-09-2016 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 Gene3D G3DSA:1.25.40.10 200 285 2.4E-22 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 Gene3D G3DSA:1.25.40.10 134 189 1.2E-5 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 Pfam PF14561 Tetratricopeptide repeat 199 285 2.4E-18 T 16-09-2016 BER92_RS12830 b091df9e6e2b68cd346dfd40b47fcadf 285 SUPERFAMILY SSF48452 136 245 4.14E-5 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS11620 7af0d261554b51b0eee48d29df0db8d5 153 Gene3D G3DSA:1.10.760.10 57 140 2.2E-26 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS11620 7af0d261554b51b0eee48d29df0db8d5 153 PANTHER PTHR33751 53 143 1.4E-24 T 16-09-2016 BER92_RS11620 7af0d261554b51b0eee48d29df0db8d5 153 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 73 138 5.4E-7 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS11620 7af0d261554b51b0eee48d29df0db8d5 153 SUPERFAMILY SSF46626 74 142 6.16E-20 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS08105 b2b290c00f5cda9773d5f60d288bc0c1 123 PANTHER PTHR30007:SF0 1 117 5.7E-19 T 16-09-2016 BER92_RS08105 b2b290c00f5cda9773d5f60d288bc0c1 123 Pfam PF13586 Transposase DDE domain 42 117 3.3E-7 T 16-09-2016 IPR025668 Transposase DDE domain BER92_RS08105 b2b290c00f5cda9773d5f60d288bc0c1 123 PANTHER PTHR30007 1 117 5.7E-19 T 16-09-2016 BER92_RS08855 a0b29e8e5f717f01afde5b1279317625 200 Pfam PF08534 Redoxin 49 171 2.5E-16 T 16-09-2016 IPR013740 Redoxin GO:0016491 BER92_RS08855 a0b29e8e5f717f01afde5b1279317625 200 Gene3D G3DSA:3.40.30.10 21 185 1.1E-35 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS08855 a0b29e8e5f717f01afde5b1279317625 200 PANTHER PTHR10681:SF107 1 188 2.2E-57 T 16-09-2016 BER92_RS08855 a0b29e8e5f717f01afde5b1279317625 200 SUPERFAMILY SSF52833 43 183 3.42E-30 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS08855 a0b29e8e5f717f01afde5b1279317625 200 PANTHER PTHR10681 1 188 2.2E-57 T 16-09-2016 BER92_RS08855 a0b29e8e5f717f01afde5b1279317625 200 ProSitePatterns PS00194 Thioredoxin family active site. 78 96 - T 16-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 BER92_RS08855 a0b29e8e5f717f01afde5b1279317625 200 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 18 185 4.0E-51 T 16-09-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 BER92_RS18730 e08319bd78a407d94b0c7ab8562a9543 112 Gene3D G3DSA:1.10.238.10 23 107 5.9E-9 T 16-09-2016 IPR011992 EF-hand domain pair BER92_RS18730 e08319bd78a407d94b0c7ab8562a9543 112 SUPERFAMILY SSF47473 26 108 4.71E-12 T 16-09-2016 IPR011992 EF-hand domain pair BER92_RS18730 e08319bd78a407d94b0c7ab8562a9543 112 ProSitePatterns PS00018 EF-hand calcium-binding domain. 95 107 - T 16-09-2016 IPR018247 EF-Hand 1, calcium-binding site BER92_RS18730 e08319bd78a407d94b0c7ab8562a9543 112 ProSitePatterns PS00018 EF-hand calcium-binding domain. 34 46 - T 16-09-2016 IPR018247 EF-Hand 1, calcium-binding site BER92_RS18730 e08319bd78a407d94b0c7ab8562a9543 112 Pfam PF13202 EF hand 28 46 3.7E-4 T 16-09-2016 IPR002048 EF-hand domain GO:0005509 BER92_RS18730 e08319bd78a407d94b0c7ab8562a9543 112 Pfam PF13202 EF hand 95 107 0.026 T 16-09-2016 IPR002048 EF-hand domain GO:0005509 BER92_RS18730 e08319bd78a407d94b0c7ab8562a9543 112 ProSitePatterns PS00018 EF-hand calcium-binding domain. 58 70 - T 16-09-2016 IPR018247 EF-Hand 1, calcium-binding site BER92_RS00055 8523a1405472879e9b581906280387ba 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 136 2.4E-25 T 16-09-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 BER92_RS00055 8523a1405472879e9b581906280387ba 140 PANTHER PTHR30558:SF3 11 140 1.1E-39 T 16-09-2016 BER92_RS00055 8523a1405472879e9b581906280387ba 140 PANTHER PTHR30558 11 140 1.1E-39 T 16-09-2016 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 447 8.7E-121 T 16-09-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 SUPERFAMILY SSF55681 4 359 2.99E-71 T 16-09-2016 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 PANTHER PTHR11476:SF1 2 463 2.2E-213 T 16-09-2016 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 461 28.493 T 16-09-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 SUPERFAMILY SSF52954 365 456 5.23E-20 T 16-09-2016 IPR004154 Anticodon-binding BER92_RS09190 5915d12aff183226861d0f764748d46a 474 Pfam PF03129 Anticodon binding domain 376 455 4.1E-12 T 16-09-2016 IPR004154 Anticodon-binding BER92_RS09190 5915d12aff183226861d0f764748d46a 474 Gene3D G3DSA:3.30.930.10 266 358 9.6E-88 T 16-09-2016 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 Gene3D G3DSA:3.30.930.10 2 208 9.6E-88 T 16-09-2016 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 PIRSF PIRSF001549 1 459 6.8E-141 T 16-09-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 Pfam PF13393 Histidyl-tRNA synthetase 9 349 2.2E-33 T 16-09-2016 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 PANTHER PTHR11476 2 463 2.2E-213 T 16-09-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 BER92_RS09190 5915d12aff183226861d0f764748d46a 474 Gene3D G3DSA:3.40.50.800 364 455 5.2E-24 T 16-09-2016 IPR004154 Anticodon-binding BER92_RS05365 67c0ef1cfc066f793da6a95e757d638a 264 Gene3D G3DSA:3.20.20.70 18 239 4.9E-55 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS05365 67c0ef1cfc066f793da6a95e757d638a 264 SUPERFAMILY SSF110399 8 250 9.55E-88 T 16-09-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 BER92_RS05365 67c0ef1cfc066f793da6a95e757d638a 264 Pfam PF05690 Thiazole biosynthesis protein ThiG 12 258 8.9E-111 T 16-09-2016 BER92_RS05365 67c0ef1cfc066f793da6a95e757d638a 264 PANTHER PTHR34266:SF2 5 263 5.8E-154 T 16-09-2016 BER92_RS05365 67c0ef1cfc066f793da6a95e757d638a 264 Hamap MF_00443 Thiazole synthase [thiG]. 9 264 42.444 T 16-09-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 BER92_RS05365 67c0ef1cfc066f793da6a95e757d638a 264 PANTHER PTHR34266 5 263 5.8E-154 T 16-09-2016 BER92_RS05250 a4545f51385d2adc4f89efd4957d34a9 180 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 176 34.055 T 16-09-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 BER92_RS05250 a4545f51385d2adc4f89efd4957d34a9 180 SUPERFAMILY SSF54211 92 172 4.05E-25 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS05250 a4545f51385d2adc4f89efd4957d34a9 180 Pfam PF00333 Ribosomal protein S5, N-terminal domain 26 87 5.8E-25 T 16-09-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS05250 a4545f51385d2adc4f89efd4957d34a9 180 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 24 176 1.1E-63 T 16-09-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 BER92_RS05250 a4545f51385d2adc4f89efd4957d34a9 180 Gene3D G3DSA:3.30.160.20 22 85 8.8E-26 T 16-09-2016 IPR014720 Double-stranded RNA-binding domain BER92_RS05250 a4545f51385d2adc4f89efd4957d34a9 180 Pfam PF03719 Ribosomal protein S5, C-terminal domain 102 170 1.4E-28 T 16-09-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 BER92_RS05250 a4545f51385d2adc4f89efd4957d34a9 180 Gene3D G3DSA:3.30.230.10 90 172 4.7E-31 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS05250 a4545f51385d2adc4f89efd4957d34a9 180 SUPERFAMILY SSF54768 22 89 6.59E-20 T 16-09-2016 BER92_RS05250 a4545f51385d2adc4f89efd4957d34a9 180 PANTHER PTHR13718 22 177 1.9E-71 T 16-09-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 BER92_RS17135 2184c39ec295848381094250eee70595 1186 Pfam PF03705 CheR methyltransferase, all-alpha domain 227 274 1.5E-12 T 16-09-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BER92_RS17135 2184c39ec295848381094250eee70595 1186 SUPERFAMILY SSF53335 289 482 8.14E-51 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS17135 2184c39ec295848381094250eee70595 1186 SUPERFAMILY SSF47757 223 291 2.35E-12 T 16-09-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BER92_RS17135 2184c39ec295848381094250eee70595 1186 Pfam PF08447 PAS fold 884 968 1.3E-17 T 16-09-2016 IPR013655 PAS fold-3 GO:0005515 BER92_RS17135 2184c39ec295848381094250eee70595 1186 Gene3D G3DSA:3.40.50.150 288 483 5.4E-65 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS17135 2184c39ec295848381094250eee70595 1186 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 857 969 9.2E-7 T 16-09-2016 IPR000014 PAS domain BER92_RS17135 2184c39ec295848381094250eee70595 1186 PRINTS PR00996 Glutamate methyltransferase family signature 424 438 8.8E-27 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS17135 2184c39ec295848381094250eee70595 1186 PRINTS PR00996 Glutamate methyltransferase family signature 322 342 8.8E-27 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS17135 2184c39ec295848381094250eee70595 1186 PRINTS PR00996 Glutamate methyltransferase family signature 358 374 8.8E-27 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS17135 2184c39ec295848381094250eee70595 1186 PRINTS PR00996 Glutamate methyltransferase family signature 245 258 8.8E-27 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS17135 2184c39ec295848381094250eee70595 1186 PRINTS PR00996 Glutamate methyltransferase family signature 443 466 8.8E-27 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS17135 2184c39ec295848381094250eee70595 1186 PRINTS PR00996 Glutamate methyltransferase family signature 282 294 8.8E-27 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS17135 2184c39ec295848381094250eee70595 1186 SMART SM00138 223 484 5.7E-82 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS17135 2184c39ec295848381094250eee70595 1186 Gene3D G3DSA:3.40.50.180 17 206 2.2E-24 T 16-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS17135 2184c39ec295848381094250eee70595 1186 SUPERFAMILY SSF52738 21 208 1.96E-22 T 16-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS17135 2184c39ec295848381094250eee70595 1186 Pfam PF01339 CheB methylesterase 24 199 1.6E-17 T 16-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS17135 2184c39ec295848381094250eee70595 1186 PANTHER PTHR24422 113 858 0.0 T 16-09-2016 BER92_RS17135 2184c39ec295848381094250eee70595 1186 Gene3D G3DSA:3.30.450.20 858 969 1.3E-25 T 16-09-2016 BER92_RS17135 2184c39ec295848381094250eee70595 1186 SUPERFAMILY SSF55785 846 968 4.89E-19 T 16-09-2016 IPR000014 PAS domain BER92_RS17135 2184c39ec295848381094250eee70595 1186 Pfam PF01739 CheR methyltransferase, SAM binding domain 290 477 3.5E-53 T 16-09-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BER92_RS17135 2184c39ec295848381094250eee70595 1186 Gene3D G3DSA:1.10.155.10 224 286 1.0E-11 T 16-09-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BER92_RS17135 2184c39ec295848381094250eee70595 1186 Gene3D G3DSA:3.30.450.20 741 857 3.5E-8 T 16-09-2016 BER92_RS17135 2184c39ec295848381094250eee70595 1186 PANTHER PTHR24422:SF6 113 858 0.0 T 16-09-2016 BER92_RS17135 2184c39ec295848381094250eee70595 1186 Pfam PF13596 PAS domain 741 847 2.2E-21 T 16-09-2016 BER92_RS17135 2184c39ec295848381094250eee70595 1186 SMART SM00911 988 1071 5.7E-28 T 16-09-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 BER92_RS17135 2184c39ec295848381094250eee70595 1186 SUPERFAMILY SSF55785 726 847 2.09E-7 T 16-09-2016 IPR000014 PAS domain BER92_RS17135 2184c39ec295848381094250eee70595 1186 SMART SM00091 739 804 1.0 T 16-09-2016 IPR000014 PAS domain BER92_RS17135 2184c39ec295848381094250eee70595 1186 SMART SM00091 861 927 5.3E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS17135 2184c39ec295848381094250eee70595 1186 SMART SM00091 527 592 45.0 T 16-09-2016 IPR000014 PAS domain BER92_RS17135 2184c39ec295848381094250eee70595 1186 Pfam PF07536 HWE histidine kinase 988 1071 2.4E-20 T 16-09-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 BER92_RS17660 3c431bc6eb368cc5f56f050cc9285a7b 401 PANTHER PTHR13693 6 388 3.5E-159 T 16-09-2016 BER92_RS17660 3c431bc6eb368cc5f56f050cc9285a7b 401 Pfam PF00155 Aminotransferase class I and II 45 385 4.9E-49 T 16-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BER92_RS17660 3c431bc6eb368cc5f56f050cc9285a7b 401 Gene3D G3DSA:3.40.640.10 60 276 1.2E-73 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS17660 3c431bc6eb368cc5f56f050cc9285a7b 401 PANTHER PTHR13693:SF53 6 388 3.5E-159 T 16-09-2016 BER92_RS17660 3c431bc6eb368cc5f56f050cc9285a7b 401 SUPERFAMILY SSF53383 8 389 1.67E-95 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS17660 3c431bc6eb368cc5f56f050cc9285a7b 401 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 6 389 44.996 T 16-09-2016 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147|UniPathway: UPA00078 BER92_RS17660 3c431bc6eb368cc5f56f050cc9285a7b 401 Gene3D G3DSA:3.90.1150.10 277 389 1.1E-34 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS17660 3c431bc6eb368cc5f56f050cc9285a7b 401 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 23 385 8.6E-145 T 16-09-2016 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147|UniPathway: UPA00078 BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 SMART SM00852 183 320 1.9E-40 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 Pfam PF03454 MoeA C-terminal region (domain IV) 333 403 8.3E-16 T 16-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 180 310 5.1E-30 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 Gene3D G3DSA:3.90.105.10 134 165 1.4E-15 T 16-09-2016 BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 Gene3D G3DSA:3.40.980.10 166 331 6.6E-60 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 Gene3D G3DSA:2.40.340.10 332 402 1.1E-20 T 16-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 Gene3D G3DSA:2.170.190.11 52 133 8.5E-26 T 16-09-2016 BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 SUPERFAMILY SSF53218 180 324 1.44E-40 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 Pfam PF00994 Probable molybdopterin binding domain 183 318 2.7E-26 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 Pfam PF03453 MoeA N-terminal region (domain I and II) 9 170 1.5E-33 T 16-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 SUPERFAMILY SSF63882 5 179 1.2E-46 T 16-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 SUPERFAMILY SSF63867 327 404 2.35E-19 T 16-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10060 37dbb480053ec8a60664403f97125e2f 406 PANTHER PTHR10192 1 404 7.6E-135 T 16-09-2016 BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 3.5E-15 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 3.5E-15 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 3.5E-15 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 Pfam PF13404 AsnC-type helix-turn-helix domain 9 49 9.7E-15 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 SMART SM00344 9 117 3.8E-28 T 16-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 Gene3D G3DSA:1.10.10.10 9 58 1.4E-18 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 SUPERFAMILY SSF46785 9 66 7.37E-14 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 PANTHER PTHR30154:SF0 1 140 1.4E-66 T 16-09-2016 BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 PANTHER PTHR30154 1 140 1.4E-66 T 16-09-2016 BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 SUPERFAMILY SSF54909 70 139 4.83E-12 T 16-09-2016 IPR011008 Dimeric alpha-beta barrel BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 ProSitePatterns PS00519 AsnC-type HTH domain signature. 26 52 - T 16-09-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 Gene3D G3DSA:3.30.70.920 60 139 4.1E-20 T 16-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BER92_RS16085 7315f1d2b68dcabc8869bfd26feef283 140 Pfam PF01037 Lrp/AsnC ligand binding domain 74 139 1.5E-12 T 16-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 SMART SM00267 318 494 1.3E-58 T 16-09-2016 IPR000160 GGDEF domain BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 Pfam PF00990 Diguanylate cyclase, GGDEF domain 329 491 6.4E-47 T 16-09-2016 IPR000160 GGDEF domain BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 326 492 6.3E-48 T 16-09-2016 IPR000160 GGDEF domain BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 SUPERFAMILY SSF55073 334 492 5.57E-46 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 Pfam PF02743 Cache domain 44 273 6.3E-19 T 16-09-2016 IPR033479 Double Cache domain 1 BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 Gene3D G3DSA:3.30.450.20 91 172 1.6E-10 T 16-09-2016 BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 Gene3D G3DSA:3.30.70.270 332 492 2.2E-51 T 16-09-2016 BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 PANTHER PTHR10799 361 491 9.0E-25 T 16-09-2016 BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 PANTHER PTHR10799:SF728 361 491 9.0E-25 T 16-09-2016 BER92_RS13350 3e04618500b81f12326f6405be05bf63 494 Gene3D G3DSA:3.30.450.20 173 287 2.9E-10 T 16-09-2016 BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 420 6.3E-18 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 Gene3D G3DSA:3.30.565.10 280 421 1.0E-32 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 SUPERFAMILY SSF47384 196 275 3.73E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 382 6.9E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 6.9E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 6.9E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 Gene3D G3DSA:1.10.287.130 205 275 4.3E-13 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 Pfam PF00512 His Kinase A (phospho-acceptor) domain 215 276 4.4E-12 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 PANTHER PTHR24423 148 422 5.0E-58 T 16-09-2016 BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 SUPERFAMILY SSF55874 277 421 8.51E-33 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 SMART SM00388 213 279 2.5E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS04620 8f36efde76fc2a5d58f09fd76146e3f5 423 SMART SM00387 322 422 4.4E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS17180 1145a0aa133123e26798216fad9ee119 363 Gene3D G3DSA:3.90.25.10 236 309 3.7E-52 T 16-09-2016 BER92_RS17180 1145a0aa133123e26798216fad9ee119 363 Gene3D G3DSA:3.90.25.10 152 204 3.7E-52 T 16-09-2016 BER92_RS17180 1145a0aa133123e26798216fad9ee119 363 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 1 307 3.9E-116 T 16-09-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 BER92_RS17180 1145a0aa133123e26798216fad9ee119 363 PANTHER PTHR10366 1 324 2.2E-120 T 16-09-2016 BER92_RS17180 1145a0aa133123e26798216fad9ee119 363 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 297 7.8E-46 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17180 1145a0aa133123e26798216fad9ee119 363 SUPERFAMILY SSF51735 1 306 9.28E-78 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17180 1145a0aa133123e26798216fad9ee119 363 Gene3D G3DSA:3.40.50.720 1 151 4.4E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17180 1145a0aa133123e26798216fad9ee119 363 PANTHER PTHR10366:SF39 1 324 2.2E-120 T 16-09-2016 BER92_RS02880 13aa67f4f29fa5f13e948a7bea9c9119 123 Pfam PF04972 BON domain 51 113 1.6E-18 T 16-09-2016 IPR007055 BON domain BER92_RS02880 13aa67f4f29fa5f13e948a7bea9c9119 123 SMART SM00749 56 119 2.9E-9 T 16-09-2016 IPR014004 Transport-associated and nodulation domain, bacteria BER92_RS02880 13aa67f4f29fa5f13e948a7bea9c9119 123 PANTHER PTHR34606 11 123 1.4E-32 T 16-09-2016 BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 SMART SM00564 166 197 0.43 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 SMART SM00564 299 331 11.0 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 SMART SM00564 125 157 0.014 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 SMART SM00564 76 107 1.1E-4 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 SMART SM00564 210 242 0.027 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 SMART SM00564 341 372 240.0 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 Pfam PF13360 PQQ-like domain 91 330 5.0E-46 T 16-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 Gene3D G3DSA:2.140.10.10 8 403 2.0E-66 T 16-09-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 PANTHER PTHR32303 1 393 1.1E-191 T 16-09-2016 BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 5 403 38.182 T 16-09-2016 IPR017687 Outer membrane protein assembly factor BamB BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 PANTHER PTHR32303:SF8 1 393 1.1E-191 T 16-09-2016 BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 8 402 7.5E-130 T 16-09-2016 IPR017687 Outer membrane protein assembly factor BamB BER92_RS10070 aca1c0697b809118043d5629d05fd9a6 405 SUPERFAMILY SSF50998 43 395 5.0E-77 T 16-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BER92_RS08200 6d40afd4dbb8195f4f1fe9905001915e 477 SUPERFAMILY SSF52266 7 231 2.83E-37 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS08200 6d40afd4dbb8195f4f1fe9905001915e 477 SUPERFAMILY SSF52266 257 470 1.53E-48 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS08200 6d40afd4dbb8195f4f1fe9905001915e 477 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 44 220 9.3E-19 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS08200 6d40afd4dbb8195f4f1fe9905001915e 477 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 287 463 2.5E-21 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS08200 6d40afd4dbb8195f4f1fe9905001915e 477 PANTHER PTHR11852 42 202 7.1E-35 T 16-09-2016 BER92_RS08200 6d40afd4dbb8195f4f1fe9905001915e 477 Gene3D G3DSA:3.40.50.1110 7 233 6.8E-56 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS08200 6d40afd4dbb8195f4f1fe9905001915e 477 Gene3D G3DSA:3.40.50.1110 261 470 3.4E-61 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 PANTHER PTHR21089:SF3 264 351 3.1E-121 T 16-09-2016 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 164 297 9.4E-44 T 16-09-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 PANTHER PTHR21089 76 248 3.1E-121 T 16-09-2016 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 PIRSF PIRSF000445 1 417 3.6E-142 T 16-09-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 SUPERFAMILY SSF69742 1 149 1.7E-47 T 16-09-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 91 114 - T 16-09-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 SUPERFAMILY SSF51735 154 306 2.68E-29 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 Gene3D G3DSA:3.40.50.720 155 302 7.2E-32 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 PANTHER PTHR21089:SF3 76 248 3.1E-121 T 16-09-2016 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 407 3.9E-120 T 16-09-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 410 28.765 T 16-09-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 PANTHER PTHR21089 264 351 3.1E-121 T 16-09-2016 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 148 9.4E-47 T 16-09-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 312 407 1.6E-18 T 16-09-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS05030 07668ce386ffef570ee9d8af43016ab0 432 SUPERFAMILY SSF69075 309 409 1.7E-22 T 16-09-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS18175 cbf4a01e67a50c5846742c97c60dfac8 469 Gene3D G3DSA:3.90.1720.10 309 415 1.5E-20 T 16-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS18175 cbf4a01e67a50c5846742c97c60dfac8 469 Pfam PF12914 SH3 domain of SH3b2 type 215 264 3.8E-9 T 16-09-2016 IPR026864 SH3b2-type SH3 domain BER92_RS18175 cbf4a01e67a50c5846742c97c60dfac8 469 PIRSF PIRSF019015 3 462 1.0E-75 T 16-09-2016 IPR027017 Uncharacterised peptidase with NlpC/P60 domain, YkfC type BER92_RS18175 cbf4a01e67a50c5846742c97c60dfac8 469 Pfam PF12913 SH3 domain (SH3b1 type) 159 205 1.4E-17 T 16-09-2016 BER92_RS18175 cbf4a01e67a50c5846742c97c60dfac8 469 SUPERFAMILY SSF54001 307 417 8.5E-18 T 16-09-2016 BER92_RS18175 cbf4a01e67a50c5846742c97c60dfac8 469 Pfam PF00877 NlpC/P60 family 325 416 8.3E-12 T 16-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Pfam PF12860 PAS fold 369 482 3.4E-40 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Pfam PF02743 Cache domain 45 190 6.1E-13 T 16-09-2016 IPR033479 Double Cache domain 1 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 SUPERFAMILY SSF52172 759 877 1.57E-21 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Gene3D G3DSA:3.30.450.20 83 182 1.9E-8 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Gene3D G3DSA:3.40.50.2300 759 877 1.5E-19 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PANTHER PTHR24423:SF479 361 493 9.4E-194 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 SUPERFAMILY SSF103190 54 191 3.14E-14 T 16-09-2016 IPR029151 Periplasmic sensor domain-like BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 SMART SM00448 761 873 2.1E-15 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 SMART SM00388 516 581 1.3E-11 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PANTHER PTHR24423:SF479 46 62 9.4E-194 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PANTHER PTHR24423:SF479 512 881 9.4E-194 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 SMART SM00387 625 735 5.6E-29 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PANTHER PTHR24423 512 881 9.4E-194 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 SUPERFAMILY SSF47384 502 582 3.73E-12 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Gene3D G3DSA:3.30.450.20 356 476 8.6E-13 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Pfam PF00512 His Kinase A (phospho-acceptor) domain 517 581 9.3E-10 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Gene3D G3DSA:1.10.287.130 509 577 2.2E-7 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PANTHER PTHR24423 361 493 9.4E-194 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PANTHER PTHR24423 46 62 9.4E-194 T 16-09-2016 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Gene3D G3DSA:3.30.565.10 583 735 4.9E-39 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Pfam PF00072 Response regulator receiver domain 763 873 3.6E-14 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 719 732 6.6E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 695 713 6.6E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 679 689 6.6E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 675 6.6E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 626 733 1.8E-18 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 SUPERFAMILY SSF55874 570 733 5.37E-38 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03225 cf227f45eb25ef59ec5d345cb49228e9 881 SUPERFAMILY SSF55785 349 466 8.17E-8 T 16-09-2016 IPR000014 PAS domain BER92_RS11870 246ca01ad72e00b0eb0d4b9662860862 203 SUPERFAMILY SSF55729 13 184 2.43E-31 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS11870 246ca01ad72e00b0eb0d4b9662860862 203 PANTHER PTHR13256 9 200 9.3E-84 T 16-09-2016 BER92_RS11870 246ca01ad72e00b0eb0d4b9662860862 203 PANTHER PTHR13256:SF20 9 200 9.3E-84 T 16-09-2016 BER92_RS11870 246ca01ad72e00b0eb0d4b9662860862 203 Gene3D G3DSA:3.40.630.30 7 200 1.0E-53 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS11870 246ca01ad72e00b0eb0d4b9662860862 203 Pfam PF13302 Acetyltransferase (GNAT) domain 22 159 1.5E-10 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 4.6E-77 T 16-09-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 PANTHER PTHR11831:SF4 1 208 2.1E-90 T 16-09-2016 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 Gene3D G3DSA:1.10.1050.10 1 102 2.0E-42 T 16-09-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 SUPERFAMILY SSF55174 2 208 6.15E-65 T 16-09-2016 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 SMART SM01390 3 96 6.4E-48 T 16-09-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 Gene3D G3DSA:3.10.290.10 103 192 9.4E-29 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 96 1.3E-30 T 16-09-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 SMART SM00363 97 161 1.5E-16 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 PANTHER PTHR11831 1 208 2.1E-90 T 16-09-2016 IPR022801 Ribosomal protein S4/S9 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 ProSitePatterns PS00632 Ribosomal protein S4 signature. 95 119 - T 16-09-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 34.661 T 16-09-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 BER92_RS05280 6c41adadd24d2bdeb4003276a68674fa 208 Pfam PF01479 S4 domain 98 144 6.0E-18 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 Gene3D G3DSA:2.40.50.230 379 460 2.5E-31 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 SUPERFAMILY SSF69349 583 705 5.02E-10 T 16-09-2016 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 SUPERFAMILY SSF69349 450 616 1.41E-43 T 16-09-2016 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 27 514 1.3E-116 T 16-09-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 SUPERFAMILY SSF69279 18 189 7.37E-43 T 16-09-2016 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 PANTHER PTHR32305:SF7 5 683 2.6E-102 T 16-09-2016 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 Gene3D G3DSA:3.55.50.10 101 193 9.8E-18 T 16-09-2016 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 SUPERFAMILY SSF69279 196 366 3.91E-23 T 16-09-2016 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 Pfam PF05954 Phage late control gene D protein (GPD) 33 340 5.6E-74 T 16-09-2016 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 SUPERFAMILY SSF69255 372 460 7.59E-28 T 16-09-2016 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 PANTHER PTHR32305 5 683 2.6E-102 T 16-09-2016 BER92_RS04245 439584a258f3a4827a355a8bc2c68663 983 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 21 531 3.1E-140 T 16-09-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 Gene3D G3DSA:3.50.50.60 5 184 4.8E-34 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 Gene3D G3DSA:3.50.50.60 270 354 4.8E-34 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.0E-19 T 16-09-2016 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 1.0E-19 T 16-09-2016 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 1.0E-19 T 16-09-2016 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 1.0E-19 T 16-09-2016 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 SUPERFAMILY SSF51905 5 179 2.41E-47 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 SUPERFAMILY SSF51905 269 381 2.41E-47 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 6 389 6.7E-130 T 16-09-2016 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.-|UniPathway: UPA00232 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 Pfam PF01494 FAD binding domain 6 345 8.7E-29 T 16-09-2016 IPR002938 FAD-binding domain GO:0071949 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 PANTHER PTHR13789 5 390 4.2E-157 T 16-09-2016 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 389 3.5E-104 T 16-09-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 BER92_RS04770 544da2a8e33a25baef948d5e0533a163 402 PANTHER PTHR13789:SF214 5 390 4.2E-157 T 16-09-2016 BER92_RS04980 b4ac61e3b21a8f72076f183802e4cf9f 161 PIRSF PIRSF001220 1 161 4.3E-20 T 16-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 BER92_RS04980 b4ac61e3b21a8f72076f183802e4cf9f 161 Pfam PF00710 Asparaginase, N-terminal 4 155 3.3E-23 T 16-09-2016 IPR027474 L-asparaginase, N-terminal BER92_RS04980 b4ac61e3b21a8f72076f183802e4cf9f 161 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 8.9E-6 T 16-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 BER92_RS04980 b4ac61e3b21a8f72076f183802e4cf9f 161 PRINTS PR00139 Asparaginase/glutaminase family signature 75 93 8.9E-6 T 16-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 BER92_RS04980 b4ac61e3b21a8f72076f183802e4cf9f 161 PIRSF PIRSF500176 1 160 3.7E-21 T 16-09-2016 BER92_RS04980 b4ac61e3b21a8f72076f183802e4cf9f 161 SUPERFAMILY SSF53774 3 156 9.55E-33 T 16-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 BER92_RS04980 b4ac61e3b21a8f72076f183802e4cf9f 161 Gene3D G3DSA:3.40.50.1170 3 158 4.0E-29 T 16-09-2016 IPR027474 L-asparaginase, N-terminal BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 PANTHER PTHR32552:SF16 481 895 1.0E-190 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 173 1.1E-14 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 SUPERFAMILY SSF56935 546 895 3.14E-97 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 SUPERFAMILY SSF56935 280 420 3.14E-97 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 SUPERFAMILY SSF56935 450 512 3.14E-97 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 SUPERFAMILY SSF56935 31 239 3.14E-97 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 PANTHER PTHR32552 33 245 1.0E-190 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 Pfam PF00593 TonB dependent receptor 636 894 1.2E-33 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 PANTHER PTHR32552:SF16 33 245 1.0E-190 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 Gene3D G3DSA:2.170.130.10 45 172 8.2E-17 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 42 895 1.7E-229 T 16-09-2016 IPR010104 Bacterial TonB-dependent receptor BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 PANTHER PTHR32552:SF16 277 404 1.0E-190 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 PANTHER PTHR32552 277 404 1.0E-190 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 PANTHER PTHR32552 481 895 1.0E-190 T 16-09-2016 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 Gene3D G3DSA:2.40.170.20 365 431 4.5E-71 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 Gene3D G3DSA:2.40.170.20 472 523 4.5E-71 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 Gene3D G3DSA:2.40.170.20 173 322 4.5E-71 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS13750 3273134a050b74247c941d4fcf7694fc 895 Gene3D G3DSA:2.40.170.20 577 895 4.5E-71 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS07475 f61cf562b84a925db9e0e9edb195d485 281 Gene3D G3DSA:3.40.140.10 135 273 1.8E-52 T 16-09-2016 BER92_RS07475 f61cf562b84a925db9e0e9edb195d485 281 Hamap MF_00187 Protein FdhD [fdhD]. 7 272 37.629 T 16-09-2016 IPR003786 Protein FdhD GO:0016783 BER92_RS07475 f61cf562b84a925db9e0e9edb195d485 281 PIRSF PIRSF015626 3 274 2.4E-87 T 16-09-2016 IPR003786 Protein FdhD GO:0016783 BER92_RS07475 f61cf562b84a925db9e0e9edb195d485 281 PANTHER PTHR30592:SF1 1 281 9.0E-126 T 16-09-2016 BER92_RS07475 f61cf562b84a925db9e0e9edb195d485 281 Gene3D G3DSA:3.10.20.10 36 121 2.5E-28 T 16-09-2016 BER92_RS07475 f61cf562b84a925db9e0e9edb195d485 281 PANTHER PTHR30592 1 281 9.0E-126 T 16-09-2016 BER92_RS07475 f61cf562b84a925db9e0e9edb195d485 281 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 30 272 3.9E-67 T 16-09-2016 IPR003786 Protein FdhD GO:0016783 BER92_RS07475 f61cf562b84a925db9e0e9edb195d485 281 SUPERFAMILY SSF53927 16 271 2.62E-81 T 16-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 BER92_RS07475 f61cf562b84a925db9e0e9edb195d485 281 Pfam PF02634 FdhD/NarQ family 34 271 8.4E-81 T 16-09-2016 IPR003786 Protein FdhD GO:0016783 BER92_RS12655 fd373cfbe9a9b87ed9d4bdc642b58f96 207 Pfam PF03602 Conserved hypothetical protein 95 16 191 2.7E-52 T 16-09-2016 BER92_RS12655 fd373cfbe9a9b87ed9d4bdc642b58f96 207 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 14 191 1.1E-42 T 16-09-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS12655 fd373cfbe9a9b87ed9d4bdc642b58f96 207 SUPERFAMILY SSF53335 15 191 3.08E-43 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS12655 fd373cfbe9a9b87ed9d4bdc642b58f96 207 PANTHER PTHR18895 6 191 3.3E-45 T 16-09-2016 BER92_RS12655 fd373cfbe9a9b87ed9d4bdc642b58f96 207 Gene3D G3DSA:3.40.50.150 9 192 1.4E-57 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS12655 fd373cfbe9a9b87ed9d4bdc642b58f96 207 PIRSF PIRSF004553 15 193 2.4E-43 T 16-09-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS12655 fd373cfbe9a9b87ed9d4bdc642b58f96 207 PANTHER PTHR18895:SF60 6 191 3.3E-45 T 16-09-2016 BER92_RS18710 618245c6546fe1d14d8bd78f5680ea3e 426 Pfam PF12867 DinB superfamily 21 151 5.4E-8 T 16-09-2016 IPR024775 DinB-like domain BER92_RS18710 618245c6546fe1d14d8bd78f5680ea3e 426 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 18 422 1.0E-161 T 16-09-2016 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255|UniPathway: UPA01014 BER92_RS18710 618245c6546fe1d14d8bd78f5680ea3e 426 PANTHER PTHR23150:SF24 18 426 2.1E-124 T 16-09-2016 BER92_RS18710 618245c6546fe1d14d8bd78f5680ea3e 426 PANTHER PTHR23150 18 426 2.1E-124 T 16-09-2016 BER92_RS18710 618245c6546fe1d14d8bd78f5680ea3e 426 Gene3D G3DSA:3.90.1580.10 202 425 7.1E-52 T 16-09-2016 IPR005532 Sulfatase-modifying factor enzyme BER92_RS18710 618245c6546fe1d14d8bd78f5680ea3e 426 Pfam PF03781 Sulfatase-modifying factor enzyme 1 343 423 5.6E-7 T 16-09-2016 IPR005532 Sulfatase-modifying factor enzyme BER92_RS18710 618245c6546fe1d14d8bd78f5680ea3e 426 Pfam PF03781 Sulfatase-modifying factor enzyme 1 204 338 7.9E-22 T 16-09-2016 IPR005532 Sulfatase-modifying factor enzyme BER92_RS18710 618245c6546fe1d14d8bd78f5680ea3e 426 SUPERFAMILY SSF56436 189 425 2.2E-61 T 16-09-2016 IPR016187 C-type lectin fold BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 PANTHER PTHR21197:SF0 1 392 1.3E-110 T 16-09-2016 BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 PANTHER PTHR21197 1 392 1.3E-110 T 16-09-2016 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 SUPERFAMILY SSF54373 267 332 1.61E-22 T 16-09-2016 BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 Pfam PF13450 NAD(P)-binding Rossmann-like domain 26 90 4.0E-16 T 16-09-2016 BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 22 380 1.3E-122 T 16-09-2016 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 Pfam PF03275 UDP-galactopyranose mutase 169 365 4.6E-83 T 16-09-2016 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 Gene3D G3DSA:3.40.50.720 203 276 7.5E-46 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 Gene3D G3DSA:3.40.50.720 340 381 7.5E-46 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 Gene3D G3DSA:3.40.50.720 20 100 7.5E-46 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 SUPERFAMILY SSF51971 350 385 8.59E-51 T 16-09-2016 BER92_RS17190 c763cc884971e631d8533fdb47183a20 395 SUPERFAMILY SSF51971 22 285 8.59E-51 T 16-09-2016 BER92_RS08565 3637ec66c234fb1f2a9874368dc6608f 216 PANTHER PTHR12151 8 212 1.0E-58 T 16-09-2016 IPR003782 Copper chaperone SCO1/SenC BER92_RS08565 3637ec66c234fb1f2a9874368dc6608f 216 Gene3D G3DSA:3.40.30.10 9 212 1.6E-47 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS08565 3637ec66c234fb1f2a9874368dc6608f 216 PANTHER PTHR12151:SF0 8 212 1.0E-58 T 16-09-2016 BER92_RS08565 3637ec66c234fb1f2a9874368dc6608f 216 SUPERFAMILY SSF52833 47 211 2.18E-40 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS08565 3637ec66c234fb1f2a9874368dc6608f 216 Pfam PF02630 SCO1/SenC 52 190 8.8E-22 T 16-09-2016 IPR003782 Copper chaperone SCO1/SenC BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 SUPERFAMILY SSF47819 293 360 3.71E-12 T 16-09-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 TIGRFAM TIGR01388 rnd: ribonuclease D 4 357 2.5E-117 T 16-09-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 SUPERFAMILY SSF53098 2 192 1.21E-54 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 SMART SM00474 2 169 9.6E-33 T 16-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 Pfam PF01612 3'-5' exonuclease 8 168 2.6E-30 T 16-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 Hamap MF_01899 Ribonuclease D [rnd]. 2 359 36.528 T 16-09-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 PANTHER PTHR12124:SF42 9 356 1.3E-66 T 16-09-2016 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 Pfam PF00570 HRDC domain 213 258 1.1E-5 T 16-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 SUPERFAMILY SSF47819 194 283 3.27E-16 T 16-09-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 PANTHER PTHR12124 9 356 1.3E-66 T 16-09-2016 BER92_RS06940 87e8473fbc599f48e79e248ec709b54d 364 Gene3D G3DSA:3.30.420.10 6 188 1.2E-15 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 SUPERFAMILY SSF52096 10 305 2.79E-64 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 Gene3D G3DSA:3.90.226.10 12 214 1.2E-60 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 586 2.5E-16 T 16-09-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 SUPERFAMILY SSF51735 316 495 2.22E-43 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 SUPERFAMILY SSF48179 603 681 5.36E-17 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 Gene3D G3DSA:1.10.1040.10 612 681 1.1E-11 T 16-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 SUPERFAMILY SSF48179 495 596 6.29E-22 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 PANTHER PTHR23309:SF11 13 684 1.7E-229 T 16-09-2016 BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 PANTHER PTHR23309 13 684 1.7E-229 T 16-09-2016 BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 Gene3D G3DSA:3.40.50.720 316 497 3.6E-45 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 Gene3D G3DSA:1.10.1040.10 498 587 8.6E-20 T 16-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 319 491 1.3E-45 T 16-09-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 BER92_RS06790 397035decfaec219c3df1bd3ef6a507b 693 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 207 2.5E-35 T 16-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 Pfam PF00072 Response regulator receiver domain 3 114 8.3E-26 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 SMART SM00448 1 114 1.5E-25 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 SUPERFAMILY SSF46894 139 206 5.78E-19 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 SMART SM00421 145 202 2.4E-21 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 Gene3D G3DSA:1.10.10.10 121 206 5.9E-24 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 1.5E-12 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 1.5E-12 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 1.5E-12 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 Gene3D G3DSA:3.40.50.2300 2 120 5.5E-31 T 16-09-2016 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 SUPERFAMILY SSF52172 2 130 1.28E-30 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 PANTHER PTHR26402:SF458 1 202 4.1E-79 T 16-09-2016 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 PANTHER PTHR26402 1 202 4.1E-79 T 16-09-2016 BER92_RS10325 6f6a4f412af4629db77e602d7c8b986f 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 202 2.1E-17 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS11475 d8c6a8a7db30cd0a13b28dd8ee090054 210 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 191 8.3E-52 T 16-09-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 BER92_RS11475 d8c6a8a7db30cd0a13b28dd8ee090054 210 Pfam PF01066 CDP-alcohol phosphatidyltransferase 5 71 2.7E-17 T 16-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BER92_RS11475 d8c6a8a7db30cd0a13b28dd8ee090054 210 PIRSF PIRSF000847 1 200 5.8E-43 T 16-09-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 BER92_RS11475 d8c6a8a7db30cd0a13b28dd8ee090054 210 PANTHER PTHR14269:SF13 3 191 1.0E-68 T 16-09-2016 BER92_RS11475 d8c6a8a7db30cd0a13b28dd8ee090054 210 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 16-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BER92_RS11475 d8c6a8a7db30cd0a13b28dd8ee090054 210 PANTHER PTHR14269 3 191 1.0E-68 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 Gene3D G3DSA:3.50.50.60 150 346 8.7E-49 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 48 58 - T 16-09-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 340 3.7E-64 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PIRSF PIRSF000350 1 478 1.3E-73 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 Gene3D G3DSA:3.30.390.30 347 477 1.8E-47 T 16-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 47 62 1.1E-71 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 277 291 1.1E-71 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 1.1E-71 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 355 376 1.1E-71 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 442 462 1.1E-71 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 158 1.1E-71 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 185 210 1.1E-71 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 320 327 1.1E-71 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 420 435 1.1E-71 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 185 203 9.0E-34 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 9.0E-34 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 305 327 9.0E-34 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 292 9.0E-34 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 9.0E-34 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 359 467 4.8E-36 T 16-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 SUPERFAMILY SSF51905 4 349 7.29E-58 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 Gene3D G3DSA:3.50.50.60 5 149 3.6E-34 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PANTHER PTHR22912:SF131 4 471 2.5E-290 T 16-09-2016 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 SUPERFAMILY SSF55424 356 477 1.37E-41 T 16-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 477 4.3E-150 T 16-09-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 BER92_RS08035 16b92bc9b9092bf95857e700d228f1c2 480 PANTHER PTHR22912 4 471 2.5E-290 T 16-09-2016 BER92_RS16980 c7297d4dc65af28b971df8b8c74482a1 335 SUPERFAMILY SSF53300 96 294 4.75E-36 T 16-09-2016 IPR002035 von Willebrand factor, type A BER92_RS16980 c7297d4dc65af28b971df8b8c74482a1 335 PANTHER PTHR22550:SF12 1 330 6.5E-159 T 16-09-2016 BER92_RS16980 c7297d4dc65af28b971df8b8c74482a1 335 Pfam PF00092 von Willebrand factor type A domain 101 291 7.9E-26 T 16-09-2016 IPR002035 von Willebrand factor, type A BER92_RS16980 c7297d4dc65af28b971df8b8c74482a1 335 PANTHER PTHR22550 1 330 6.5E-159 T 16-09-2016 BER92_RS16980 c7297d4dc65af28b971df8b8c74482a1 335 SMART SM00327 98 298 1.9E-22 T 16-09-2016 IPR002035 von Willebrand factor, type A BER92_RS16980 c7297d4dc65af28b971df8b8c74482a1 335 Gene3D G3DSA:3.40.50.410 96 293 1.6E-26 T 16-09-2016 IPR002035 von Willebrand factor, type A BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 253 2.2E-99 T 16-09-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 PANTHER PTHR11935:SF7 1 254 7.2E-91 T 16-09-2016 BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 Gene3D G3DSA:3.60.15.10 5 254 1.6E-80 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 PIRSF PIRSF005457 1 253 2.4E-90 T 16-09-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 SUPERFAMILY SSF56281 1 254 4.19E-63 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 253 3.9E-26 T 16-09-2016 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 253 42.56 T 16-09-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 SMART SM00849 11 165 1.7E-32 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 Pfam PF00753 Metallo-beta-lactamase superfamily 16 165 3.7E-16 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS14165 76d94cd26218e6dae164464ebef21e86 255 PANTHER PTHR11935 1 254 7.2E-91 T 16-09-2016 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 SUPERFAMILY SSF50447 805 901 2.29E-31 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 SUPERFAMILY SSF52540 400 570 3.38E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 SUPERFAMILY SSF46955 4 52 1.1E-8 T 16-09-2016 IPR009061 Putative DNA-binding domain BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 4 901 16.779 T 16-09-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 PANTHER PTHR23115 757 901 9.7E-199 T 16-09-2016 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 405 561 4.5E-31 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 320 903 1.5E-245 T 16-09-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 SUPERFAMILY SSF50447 575 658 4.99E-24 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Gene3D G3DSA:2.40.30.10 574 666 1.7E-20 T 16-09-2016 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 PANTHER PTHR23115:SF184 757 901 9.7E-199 T 16-09-2016 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Gene3D G3DSA:3.40.50.300 398 562 2.1E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Pfam PF11987 Translation-initiation factor 2 688 793 9.4E-35 T 16-09-2016 IPR023115 Translation initiation factor IF- 2, domain 3 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 SUPERFAMILY SSF52156 686 810 1.96E-33 T 16-09-2016 IPR023115 Translation initiation factor IF- 2, domain 3 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Gene3D G3DSA:3.30.56.50 3 52 1.6E-21 T 16-09-2016 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 326 376 2.2E-14 T 16-09-2016 IPR006847 Translation initiation factor IF-2, N-terminal BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 PANTHER PTHR23115:SF184 383 731 9.7E-199 T 16-09-2016 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Pfam PF00009 Elongation factor Tu GTP binding domain 407 562 5.0E-33 T 16-09-2016 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Gene3D G3DSA:2.40.30.10 805 901 1.9E-35 T 16-09-2016 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Gene3D G3DSA:3.40.50.10050 703 781 6.1E-25 T 16-09-2016 IPR023115 Translation initiation factor IF- 2, domain 3 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 PANTHER PTHR23115 383 731 9.7E-199 T 16-09-2016 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 ProSitePatterns PS01176 Initiation factor 2 signature. 854 876 - T 16-09-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 BER92_RS07325 94076355ab38d9177da1bfe1e53af5d6 903 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 70 105 7.1E-8 T 16-09-2016 IPR013575 Initiation factor 2 associated domain, bacterial BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 PANTHER PTHR11455 1 471 6.7E-199 T 16-09-2016 BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 Gene3D G3DSA:1.25.40.80 145 168 1.2E-38 T 16-09-2016 BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 Gene3D G3DSA:1.25.40.80 201 280 1.2E-38 T 16-09-2016 BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 Pfam PF03441 FAD binding domain of DNA photolyase 272 468 6.4E-77 T 16-09-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 SUPERFAMILY SSF52425 3 180 6.8E-57 T 16-09-2016 IPR006050 DNA photolyase, N-terminal BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 Pfam PF00875 DNA photolyase 4 167 1.4E-52 T 16-09-2016 IPR006050 DNA photolyase, N-terminal BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 SUPERFAMILY SSF48173 191 471 7.46E-98 T 16-09-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 Gene3D G3DSA:3.40.50.620 2 144 3.2E-51 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 PRINTS PR00147 DNA photolyase signature 342 360 2.5E-21 T 16-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 PRINTS PR00147 DNA photolyase signature 140 156 2.5E-21 T 16-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 PRINTS PR00147 DNA photolyase signature 322 338 2.5E-21 T 16-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 PRINTS PR00147 DNA photolyase signature 381 395 2.5E-21 T 16-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 322 334 - T 16-09-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 PANTHER PTHR11455:SF18 1 471 6.7E-199 T 16-09-2016 BER92_RS06715 4bb59bb79e1705f790331392ae20a2ec 472 Gene3D G3DSA:1.10.579.10 281 471 2.8E-71 T 16-09-2016 BER92_RS06925 c3e3c428f6af22ef0175a72bf7bb8ee7 133 SMART SM00528 78 121 8.2E-18 T 16-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BER92_RS06925 c3e3c428f6af22ef0175a72bf7bb8ee7 133 SUPERFAMILY SSF81273 81 111 3.84E-6 T 16-09-2016 BER92_RS06925 c3e3c428f6af22ef0175a72bf7bb8ee7 133 Pfam PF00816 H-NS histone family 17 111 8.3E-18 T 16-09-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BER92_RS06925 c3e3c428f6af22ef0175a72bf7bb8ee7 133 Gene3D G3DSA:4.10.430.10 83 110 9.5E-7 T 16-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BER92_RS02430 5acbbd0ce7ca9dabc8c6e48defcc12db 207 Gene3D G3DSA:3.40.50.300 6 194 3.0E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02430 5acbbd0ce7ca9dabc8c6e48defcc12db 207 PANTHER PTHR11649 12 198 1.8E-51 T 16-09-2016 BER92_RS02430 5acbbd0ce7ca9dabc8c6e48defcc12db 207 Pfam PF01926 50S ribosome-binding GTPase 27 134 3.2E-18 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS02430 5acbbd0ce7ca9dabc8c6e48defcc12db 207 SUPERFAMILY SSF52540 16 197 7.99E-34 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02430 5acbbd0ce7ca9dabc8c6e48defcc12db 207 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 13 197 26.218 T 16-09-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 BER92_RS02430 5acbbd0ce7ca9dabc8c6e48defcc12db 207 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 9 192 8.3E-68 T 16-09-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 PANTHER PTHR33121 551 788 1.5E-54 T 16-09-2016 BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 Pfam PF00563 EAL domain 549 784 1.2E-58 T 16-09-2016 IPR001633 EAL domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 SUPERFAMILY SSF55073 375 533 1.26E-42 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 SMART SM00267 359 531 7.9E-51 T 16-09-2016 IPR000160 GGDEF domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 Pfam PF00990 Diguanylate cyclase, GGDEF domain 370 527 3.3E-37 T 16-09-2016 IPR000160 GGDEF domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 Gene3D G3DSA:3.30.70.270 371 533 1.4E-47 T 16-09-2016 BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 Pfam PF08447 PAS fold 270 340 8.4E-6 T 16-09-2016 IPR013655 PAS fold-3 GO:0005515 BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 SMART SM00091 247 313 3.1E-7 T 16-09-2016 IPR000014 PAS domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 245 363 3.3E-14 T 16-09-2016 IPR000014 PAS domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 SMART SM00086 317 359 5.5E-5 T 16-09-2016 IPR001610 PAC motif BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 PANTHER PTHR33121:SF10 551 788 1.5E-54 T 16-09-2016 BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 SMART SM00052 543 789 7.3E-51 T 16-09-2016 IPR001633 EAL domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 Gene3D G3DSA:3.20.20.450 548 793 2.0E-68 T 16-09-2016 IPR001633 EAL domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 SUPERFAMILY SSF141868 549 795 1.83E-67 T 16-09-2016 IPR001633 EAL domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 SUPERFAMILY SSF55785 236 357 8.55E-16 T 16-09-2016 IPR000014 PAS domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 368 529 2.8E-36 T 16-09-2016 IPR000160 GGDEF domain BER92_RS13070 1dbcc37df8cd60c22bddd774a003cf37 802 Gene3D G3DSA:3.30.450.20 236 357 3.6E-16 T 16-09-2016 BER92_RS08980 bf4b37d9004e805a63a1e060ce9b3182 410 PANTHER PTHR21530 26 322 3.5E-88 T 16-09-2016 BER92_RS08980 bf4b37d9004e805a63a1e060ce9b3182 410 PANTHER PTHR21530:SF0 26 322 3.5E-88 T 16-09-2016 BER92_RS08980 bf4b37d9004e805a63a1e060ce9b3182 410 Pfam PF01963 TraB family 25 246 1.1E-24 T 16-09-2016 IPR002816 Pheromone shutdown, TraB BER92_RS08980 bf4b37d9004e805a63a1e060ce9b3182 410 TIGRFAM TIGR00261 traB: TraB family protein 32 404 3.3E-78 T 16-09-2016 IPR005230 Pheromone shutdown, TraB, bacterial/archaeal BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 Gene3D G3DSA:3.90.190.20 336 478 2.2E-52 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 PANTHER PTHR23135 9 492 3.0E-186 T 16-09-2016 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 Pfam PF08245 Mur ligase middle domain 109 311 1.6E-49 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 20 485 7.2E-151 T 16-09-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 Pfam PF01225 Mur ligase family, catalytic domain 22 97 2.6E-11 T 16-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 SUPERFAMILY SSF63418 9 100 8.24E-19 T 16-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 333 415 1.0E-18 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 PANTHER PTHR23135:SF4 9 492 3.0E-186 T 16-09-2016 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 5 485 33.632 T 16-09-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 Gene3D G3DSA:3.40.1190.10 100 335 1.3E-79 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 SUPERFAMILY SSF53244 332 486 3.01E-45 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 Gene3D G3DSA:3.40.1390.10 13 99 1.5E-19 T 16-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03755 96df1aea7cfeaba83da13e3ddb070372 495 SUPERFAMILY SSF53623 100 331 2.09E-75 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS12180 b2e2caeada1a8d5c5813aff48e9e8c3c 465 PANTHER PTHR11785:SF399 3 456 1.5E-281 T 16-09-2016 BER92_RS12180 b2e2caeada1a8d5c5813aff48e9e8c3c 465 PANTHER PTHR11785 3 456 1.5E-281 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS12180 b2e2caeada1a8d5c5813aff48e9e8c3c 465 PIRSF PIRSF006060 1 465 1.3E-75 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS12180 b2e2caeada1a8d5c5813aff48e9e8c3c 465 ProSitePatterns PS00218 Amino acid permeases signature. 45 76 - T 16-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BER92_RS12180 b2e2caeada1a8d5c5813aff48e9e8c3c 465 Pfam PF00324 Amino acid permease 20 448 2.5E-107 T 16-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 SUPERFAMILY SSF47203 234 388 4.03E-60 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 PANTHER PTHR10909:SF305 13 393 7.9E-200 T 16-09-2016 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 16-09-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 Gene3D G3DSA:1.20.140.10 226 388 5.7E-70 T 16-09-2016 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 132 144 - T 16-09-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 125 5.2E-30 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 SUPERFAMILY SSF56645 13 249 5.89E-83 T 16-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 386 9.7E-50 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 130 224 1.2E-27 T 16-09-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 Gene3D G3DSA:2.40.110.10 130 225 4.4E-43 T 16-09-2016 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 PANTHER PTHR10909 13 393 7.9E-200 T 16-09-2016 BER92_RS06765 9dc60026f2324f57f99a55aef46e82e2 393 Gene3D G3DSA:1.10.540.10 12 125 2.7E-37 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS05510 186ee53f87db98b67c8693bae96a24ce 113 SUPERFAMILY SSF47413 7 78 3.94E-13 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS05510 186ee53f87db98b67c8693bae96a24ce 113 Pfam PF13560 Helix-turn-helix domain 10 70 5.6E-11 T 16-09-2016 BER92_RS05510 186ee53f87db98b67c8693bae96a24ce 113 Gene3D G3DSA:1.10.260.40 7 80 1.2E-18 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS05510 186ee53f87db98b67c8693bae96a24ce 113 SMART SM00530 13 72 7.3E-11 T 16-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BER92_RS03865 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03865 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS03865 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS03865 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS10500 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10500 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS10500 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS10500 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS05550 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS05550 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS05550 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS05550 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS05420 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS05420 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS05420 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS05420 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS05630 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS05630 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS05630 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS05630 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS16850 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16850 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS16850 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS16850 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS10655 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10655 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS10655 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS10655 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS16250 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16250 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS16250 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS16250 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS03670 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03670 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS03670 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS03670 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS03110 908d296cd2256c60cda29e25bf647641 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03110 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007:SF17 7 258 6.1E-133 T 16-09-2016 BER92_RS03110 908d296cd2256c60cda29e25bf647641 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS03110 908d296cd2256c60cda29e25bf647641 268 PANTHER PTHR30007 7 258 6.1E-133 T 16-09-2016 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 Pfam PF04542 Sigma-70 region 2 25 96 3.0E-17 T 16-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 Pfam PF04545 Sigma-70, region 4 190 238 1.2E-16 T 16-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 PRINTS PR00046 Major sigma-70 factor signature 226 237 2.4E-11 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 PRINTS PR00046 Major sigma-70 factor signature 211 226 2.4E-11 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 PRINTS PR00046 Major sigma-70 factor signature 51 64 2.4E-11 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 PRINTS PR00046 Major sigma-70 factor signature 194 206 2.4E-11 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 24 242 1.1E-79 T 16-09-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 Gene3D G3DSA:1.10.10.10 178 242 6.2E-12 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 10 244 64.587 T 16-09-2016 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 Pfam PF04539 Sigma-70 region 3 107 177 6.4E-13 T 16-09-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 SUPERFAMILY SSF88659 97 163 3.18E-11 T 16-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 SUPERFAMILY SSF88659 170 241 7.1E-19 T 16-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 211 237 - T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 PIRSF PIRSF000770 1 246 8.0E-39 T 16-09-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 SUPERFAMILY SSF88946 18 96 1.01E-24 T 16-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 Gene3D G3DSA:1.10.10.10 96 144 4.3E-6 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 PANTHER PTHR30385 14 242 7.5E-70 T 16-09-2016 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 PANTHER PTHR30385:SF7 14 242 7.5E-70 T 16-09-2016 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 240 4.8E-33 T 16-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS10465 aca0a689d82cd6fd4042a34a2dcc2a7b 255 Gene3D G3DSA:1.10.601.10 18 91 1.1E-15 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376 1177 1262 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 SUPERFAMILY SSF64484 16 945 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 SUPERFAMILY SSF64484 1134 1363 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1029 0.0 T 16-09-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Gene3D G3DSA:2.40.40.20 349 376 1.1E-37 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Gene3D G3DSA:2.40.40.20 417 489 1.1E-37 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376 1303 1393 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 15 1376 10.5 T 16-09-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 13 588 32.275 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Gene3D G3DSA:2.40.50.100 984 1016 1.5E-4 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Gene3D G3DSA:2.40.50.100 1157 1208 2.7E-7 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 1.1E-27 T 16-09-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Pfam PF04997 RNA polymerase Rpb1, domain 1 17 342 3.7E-86 T 16-09-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376:SF32 4 551 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376:SF32 570 944 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376:SF32 963 1158 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 SMART SM00663 235 514 1.1E-183 T 16-09-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376 4 551 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376 570 944 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376 963 1158 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 6.9E-19 T 16-09-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 1.5E-27 T 16-09-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 395 3.7E-8 T 16-09-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1314 9.8E-77 T 16-09-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376:SF32 1177 1262 0.0 T 16-09-2016 BER92_RS05135 053bafc7cfe76a5f3028de7fe707afb1 1404 PANTHER PTHR19376:SF32 1303 1393 0.0 T 16-09-2016 BER92_RS19160 98772919e107331f923dca415a86926d 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS19160 98772919e107331f923dca415a86926d 322 PANTHER PTHR35604 2 322 4.6E-239 T 16-09-2016 BER92_RS19160 98772919e107331f923dca415a86926d 322 Pfam PF05598 Transposase domain (DUF772) 50 122 5.6E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS19160 98772919e107331f923dca415a86926d 322 PANTHER PTHR35604:SF2 2 322 4.6E-239 T 16-09-2016 BER92_RS16465 98772919e107331f923dca415a86926d 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16465 98772919e107331f923dca415a86926d 322 PANTHER PTHR35604 2 322 4.6E-239 T 16-09-2016 BER92_RS16465 98772919e107331f923dca415a86926d 322 Pfam PF05598 Transposase domain (DUF772) 50 122 5.6E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS16465 98772919e107331f923dca415a86926d 322 PANTHER PTHR35604:SF2 2 322 4.6E-239 T 16-09-2016 BER92_RS19175 54aac9357d479c278a8672fe6a153982 96 SUPERFAMILY SSF47413 8 87 1.21E-25 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS19175 54aac9357d479c278a8672fe6a153982 96 PANTHER PTHR36924:SF1 1 93 4.3E-45 T 16-09-2016 BER92_RS19175 54aac9357d479c278a8672fe6a153982 96 Gene3D G3DSA:1.10.260.40 4 81 6.7E-34 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS19175 54aac9357d479c278a8672fe6a153982 96 SMART SM00530 13 67 2.9E-8 T 16-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BER92_RS19175 54aac9357d479c278a8672fe6a153982 96 Pfam PF01381 Helix-turn-helix 14 61 2.8E-10 T 16-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BER92_RS19175 54aac9357d479c278a8672fe6a153982 96 PANTHER PTHR36924 1 93 4.3E-45 T 16-09-2016 BER92_RS19175 54aac9357d479c278a8672fe6a153982 96 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 6 82 1.3E-31 T 16-09-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 PANTHER PTHR23076 8 617 0.0 T 16-09-2016 BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 Pfam PF06480 FtsH Extracellular 8 100 8.9E-10 T 16-09-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 SMART SM00382 197 336 1.6E-26 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 Gene3D G3DSA:3.40.50.300 161 344 4.8E-65 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 SUPERFAMILY SSF140990 416 616 1.83E-76 T 16-09-2016 BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 Pfam PF01434 Peptidase family M41 395 604 4.6E-82 T 16-09-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 ProSitePatterns PS00674 AAA-protein family signature. 304 322 - T 16-09-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 SUPERFAMILY SSF52540 159 404 7.38E-74 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 201 333 3.1E-46 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 627 37.585 T 16-09-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 111 606 1.0E-240 T 16-09-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 BER92_RS11185 63bf55677df6eb878fe6e7a0d5eb7a63 646 Gene3D G3DSA:1.10.8.60 345 418 1.9E-27 T 16-09-2016 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 SUPERFAMILY SSF52743 31 294 3.67E-65 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 SUPERFAMILY SSF52743 357 448 3.67E-65 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 SUPERFAMILY SSF52743 322 329 3.67E-65 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PANTHER PTHR10795:SF416 31 223 9.2E-64 T 16-09-2016 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 364 374 - T 16-09-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 Pfam PF00082 Subtilase family 71 436 1.2E-31 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PANTHER PTHR10795 31 223 9.2E-64 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PANTHER PTHR10795 362 566 9.2E-64 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PANTHER PTHR10795 247 303 9.2E-64 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PRINTS PR00723 Subtilisin serine protease family (S8) signature 71 90 8.5E-17 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PRINTS PR00723 Subtilisin serine protease family (S8) signature 114 127 8.5E-17 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PRINTS PR00723 Subtilisin serine protease family (S8) signature 363 379 8.5E-17 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PANTHER PTHR10795:SF416 319 333 9.2E-64 T 16-09-2016 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 118 128 - T 16-09-2016 IPR022398 Peptidase S8, subtilisin, His-active site BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 76 87 - T 16-09-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 Pfam PF01483 Proprotein convertase P-domain 490 580 1.3E-17 T 16-09-2016 IPR002884 Proprotein convertase, P GO:0004252|GO:0006508 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 SUPERFAMILY SSF49785 479 583 1.53E-17 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PANTHER PTHR10795 319 333 9.2E-64 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 Gene3D G3DSA:3.40.50.200 30 448 3.3E-79 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 Gene3D G3DSA:2.60.120.260 480 583 8.5E-19 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PANTHER PTHR10795:SF416 362 566 9.2E-64 T 16-09-2016 BER92_RS13155 56acb7f7a9bd53463558655b9685efe5 583 PANTHER PTHR10795:SF416 247 303 9.2E-64 T 16-09-2016 BER92_RS12035 d731cd1f9bd96e3b0d657f899ffe2f3f 186 Gene3D G3DSA:3.40.50.2020 19 181 1.8E-59 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS12035 d731cd1f9bd96e3b0d657f899ffe2f3f 186 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 20 183 1.2E-60 T 16-09-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 BER92_RS12035 d731cd1f9bd96e3b0d657f899ffe2f3f 186 PANTHER PTHR32315 3 185 3.1E-84 T 16-09-2016 BER92_RS12035 d731cd1f9bd96e3b0d657f899ffe2f3f 186 SUPERFAMILY SSF53271 21 178 1.85E-45 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS12035 d731cd1f9bd96e3b0d657f899ffe2f3f 186 Pfam PF00156 Phosphoribosyl transferase domain 65 175 3.5E-17 T 16-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 BER92_RS12035 d731cd1f9bd96e3b0d657f899ffe2f3f 186 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 18 186 33.505 T 16-09-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 BER92_RS05935 6a8ce834e4dd0fcdd525c249cb40347e 252 Gene3D G3DSA:3.40.1280.10 2 160 1.4E-59 T 16-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER92_RS05935 6a8ce834e4dd0fcdd525c249cb40347e 252 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 229 2.7E-81 T 16-09-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BER92_RS05935 6a8ce834e4dd0fcdd525c249cb40347e 252 Gene3D G3DSA:1.10.1270.20 162 244 1.9E-29 T 16-09-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BER92_RS05935 6a8ce834e4dd0fcdd525c249cb40347e 252 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 223 4.8E-55 T 16-09-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BER92_RS05935 6a8ce834e4dd0fcdd525c249cb40347e 252 PANTHER PTHR32125:SF1 2 230 3.6E-105 T 16-09-2016 BER92_RS05935 6a8ce834e4dd0fcdd525c249cb40347e 252 SUPERFAMILY SSF75217 2 245 2.75E-90 T 16-09-2016 IPR029028 Alpha/beta knot methyltransferases BER92_RS05935 6a8ce834e4dd0fcdd525c249cb40347e 252 PANTHER PTHR32125 2 230 3.6E-105 T 16-09-2016 BER92_RS05935 6a8ce834e4dd0fcdd525c249cb40347e 252 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 252 101.364 T 16-09-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BER92_RS05935 6a8ce834e4dd0fcdd525c249cb40347e 252 PIRSF PIRSF000386 1 249 3.7E-87 T 16-09-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 SMART SM00267 258 429 2.1E-7 T 16-09-2016 IPR000160 GGDEF domain BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 Pfam PF00563 EAL domain 447 679 1.6E-51 T 16-09-2016 IPR001633 EAL domain BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 PANTHER PTHR10799 12 36 7.7E-56 T 16-09-2016 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 PANTHER PTHR10799 302 540 7.7E-56 T 16-09-2016 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 266 427 5.1E-16 T 16-09-2016 IPR000160 GGDEF domain BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 Gene3D G3DSA:3.30.450.20 132 251 1.9E-12 T 16-09-2016 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 Gene3D G3DSA:3.40.50.2300 8 121 7.8E-4 T 16-09-2016 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 248 2.7E-7 T 16-09-2016 IPR000014 PAS domain BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 SUPERFAMILY SSF55785 132 251 8.57E-12 T 16-09-2016 IPR000014 PAS domain BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 SUPERFAMILY SSF55073 275 431 5.41E-20 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 Pfam PF00990 Diguanylate cyclase, GGDEF domain 271 418 1.3E-16 T 16-09-2016 IPR000160 GGDEF domain BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 SUPERFAMILY SSF141868 447 680 3.66E-47 T 16-09-2016 IPR001633 EAL domain BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 PANTHER PTHR10799:SF710 101 277 7.7E-56 T 16-09-2016 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 PANTHER PTHR10799:SF710 302 540 7.7E-56 T 16-09-2016 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 PANTHER PTHR10799 101 277 7.7E-56 T 16-09-2016 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 Pfam PF13188 PAS domain 148 201 4.2E-4 T 16-09-2016 IPR000014 PAS domain BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 Gene3D G3DSA:3.20.20.450 445 681 5.1E-52 T 16-09-2016 IPR001633 EAL domain BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 SUPERFAMILY SSF52172 9 157 2.85E-6 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 PANTHER PTHR10799:SF710 12 36 7.7E-56 T 16-09-2016 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 Gene3D G3DSA:3.30.70.270 271 436 3.2E-25 T 16-09-2016 BER92_RS12075 3668590f356e1ccd2c709ac538d78297 689 SMART SM00052 441 685 4.8E-25 T 16-09-2016 IPR001633 EAL domain BER92_RS15530 210421e82a4727a2b29644c064bea05a 152 SMART SM00528 77 122 6.1E-15 T 16-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BER92_RS15530 210421e82a4727a2b29644c064bea05a 152 Pfam PF00816 H-NS histone family 12 116 5.9E-23 T 16-09-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BER92_RS15530 210421e82a4727a2b29644c064bea05a 152 Gene3D G3DSA:4.10.430.10 82 123 6.6E-18 T 16-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BER92_RS15530 210421e82a4727a2b29644c064bea05a 152 SUPERFAMILY SSF81273 81 123 5.89E-13 T 16-09-2016 BER92_RS15530 210421e82a4727a2b29644c064bea05a 152 PANTHER PTHR38097 1 124 2.8E-38 T 16-09-2016 BER92_RS14190 e4bf19068b2d31ee3cfb78598f4d5561 656 PANTHER PTHR31645 410 610 4.1E-171 T 16-09-2016 BER92_RS14190 e4bf19068b2d31ee3cfb78598f4d5561 656 PANTHER PTHR31645 8 391 4.1E-171 T 16-09-2016 BER92_RS14190 e4bf19068b2d31ee3cfb78598f4d5561 656 TIGRFAM TIGR00728 OPT_sfam: oligopeptide transporter, OPT superfamily 4 293 9.2E-48 T 16-09-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 BER92_RS14190 e4bf19068b2d31ee3cfb78598f4d5561 656 TIGRFAM TIGR00728 OPT_sfam: oligopeptide transporter, OPT superfamily 315 608 2.4E-42 T 16-09-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 BER92_RS14190 e4bf19068b2d31ee3cfb78598f4d5561 656 Pfam PF03169 OPT oligopeptide transporter protein 9 611 4.1E-126 T 16-09-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 BER92_RS14190 e4bf19068b2d31ee3cfb78598f4d5561 656 PANTHER PTHR31645:SF0 410 610 4.1E-171 T 16-09-2016 BER92_RS14190 e4bf19068b2d31ee3cfb78598f4d5561 656 PANTHER PTHR31645:SF0 8 391 4.1E-171 T 16-09-2016 BER92_RS14190 e4bf19068b2d31ee3cfb78598f4d5561 656 TIGRFAM TIGR00733 TIGR00733: oligopeptide transporter, OPT family 10 612 4.2E-177 T 16-09-2016 IPR004814 Oligopeptide transporter OPT BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 484 671 1.4E-46 T 16-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 PANTHER PTHR21021:SF19 431 680 1.1E-61 T 16-09-2016 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 SUPERFAMILY SSF103190 169 242 7.45E-5 T 16-09-2016 IPR029151 Periplasmic sensor domain-like BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 Gene3D G3DSA:3.30.450.20 148 205 4.5E-9 T 16-09-2016 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 PANTHER PTHR21021 431 680 1.1E-61 T 16-09-2016 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 Pfam PF02743 Cache domain 74 328 2.8E-19 T 16-09-2016 IPR033479 Double Cache domain 1 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 Pfam PF00672 HAMP domain 346 414 4.6E-12 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 Gene3D G3DSA:3.30.450.20 206 341 2.0E-6 T 16-09-2016 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 SUPERFAMILY SSF81606 469 671 2.62E-7 T 16-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 SMART SM00331 456 671 9.3E-45 T 16-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 SUPERFAMILY SSF158472 366 415 9.94E-9 T 16-09-2016 BER92_RS17365 983ffc11291aaa874a082b93ef97e8e8 693 SMART SM00304 366 419 9.1E-9 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 222 312 2.7E-19 T 16-09-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 PIRSF PIRSF001619 1 320 1.3E-131 T 16-09-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 PANTHER PTHR22976:SF1 3 325 7.4E-163 T 16-09-2016 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 SUPERFAMILY SSF102114 7 316 3.14E-94 T 16-09-2016 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 PANTHER PTHR22976 3 325 7.4E-163 T 16-09-2016 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 Pfam PF04055 Radical SAM superfamily 51 205 2.0E-15 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 Gene3D G3DSA:3.20.20.70 7 316 1.0E-103 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 TIGRFAM TIGR00433 bioB: biotin synthase 16 312 4.4E-122 T 16-09-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 SMART SM00876 222 314 8.7E-48 T 16-09-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 Hamap MF_01694 Biotin synthase [bioB]. 7 315 41.772 T 16-09-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 BER92_RS17655 488e305ba6388f24e95e2fa121d75b99 344 SMART SM00729 45 257 3.9E-36 T 16-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 SUPERFAMILY SSF53187 50 98 1.41E-62 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 SUPERFAMILY SSF53187 304 539 1.41E-62 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 SUPERFAMILY SSF52025 153 279 3.79E-5 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 Gene3D G3DSA:3.40.630.10 305 544 1.3E-58 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 Gene3D G3DSA:3.40.630.10 46 104 1.3E-58 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 PANTHER PTHR12147 510 568 2.4E-301 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 PANTHER PTHR12147:SF20 510 568 2.4E-301 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 PANTHER PTHR12147:SF20 1 226 2.4E-301 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 PANTHER PTHR12147:SF20 258 494 2.4E-301 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 Pfam PF04389 Peptidase family M28 320 537 4.9E-50 T 16-09-2016 IPR007484 Peptidase M28 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 PANTHER PTHR12147 1 226 2.4E-301 T 16-09-2016 BER92_RS00130 bc8984107e2862a54a04285eba162ef0 606 PANTHER PTHR12147 258 494 2.4E-301 T 16-09-2016 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 SUPERFAMILY SSF56935 320 647 1.94E-96 T 16-09-2016 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 SUPERFAMILY SSF56935 699 745 1.94E-96 T 16-09-2016 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 SUPERFAMILY SSF56935 775 965 1.94E-96 T 16-09-2016 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 SUPERFAMILY SSF56935 48 235 1.94E-96 T 16-09-2016 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 Gene3D G3DSA:2.170.130.10 49 177 2.3E-35 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 PANTHER PTHR30069:SF7 492 871 7.4E-112 T 16-09-2016 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 PANTHER PTHR30069:SF7 21 474 7.4E-112 T 16-09-2016 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 Gene3D G3DSA:2.40.170.20 319 448 6.8E-84 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 Gene3D G3DSA:2.40.170.20 704 965 6.8E-84 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 Gene3D G3DSA:2.40.170.20 510 672 6.8E-84 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 Gene3D G3DSA:2.40.170.20 178 253 6.8E-84 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 PANTHER PTHR30069 492 871 7.4E-112 T 16-09-2016 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 PANTHER PTHR30069 21 474 7.4E-112 T 16-09-2016 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 Pfam PF07715 TonB-dependent Receptor Plug Domain 70 175 2.4E-26 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS06310 635c56ebdb8a2bcd8d119902808c6ce7 965 Pfam PF00593 TonB dependent receptor 620 963 2.1E-31 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 Gene3D G3DSA:3.40.50.10380 8 161 1.7E-50 T 16-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 Gene3D G3DSA:3.40.50.10750 566 724 1.8E-49 T 16-09-2016 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 Pfam PF01515 Phosphate acetyl/butaryl transferase 428 748 1.0E-90 T 16-09-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 PANTHER PTHR23406 371 452 2.4E-166 T 16-09-2016 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 PANTHER PTHR23406 32 355 2.4E-166 T 16-09-2016 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 SUPERFAMILY SSF51735 164 451 9.32E-84 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 Pfam PF00390 Malic enzyme, N-terminal domain 20 152 2.9E-26 T 16-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 SUPERFAMILY SSF53659 428 751 4.52E-86 T 16-09-2016 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 SUPERFAMILY SSF53223 12 162 6.26E-51 T 16-09-2016 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 SMART SM00919 164 399 5.7E-128 T 16-09-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 Gene3D G3DSA:3.40.50.720 162 447 1.3E-85 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 PIRSF PIRSF036684 1 756 0.0 T 16-09-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 SMART SM01274 19 152 2.0E-75 T 16-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BER92_RS03240 5be205c21291c7aa88b3a0e4a5783c48 772 Pfam PF03949 Malic enzyme, NAD binding domain 166 360 2.4E-20 T 16-09-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 31 252 3.3E-84 T 16-09-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 SUPERFAMILY SSF54292 26 128 4.99E-31 T 16-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 Pfam PF13534 4Fe-4S dicluster domain 170 243 2.5E-9 T 16-09-2016 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 SUPERFAMILY SSF46548 130 257 1.1E-39 T 16-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 PANTHER PTHR11921:SF27 11 259 4.0E-205 T 16-09-2016 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 Gene3D G3DSA:1.10.1060.10 130 257 1.2E-49 T 16-09-2016 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 171 182 - T 16-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER92_RS11550 cd342f79db6395edd30970c96e176651 260 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 28 133 2.9E-33 T 16-09-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 79 87 - T 16-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 PANTHER PTHR11921 11 259 4.0E-205 T 16-09-2016 BER92_RS11550 cd342f79db6395edd30970c96e176651 260 Gene3D G3DSA:3.10.20.30 21 128 1.3E-43 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS13595 e4a3a9b040d4b7ca51d0937184333741 388 Pfam PF01594 Domain of unknown function DUF20 21 348 5.6E-58 T 16-09-2016 IPR002549 Transmembrane protein TqsA-like BER92_RS13595 e4a3a9b040d4b7ca51d0937184333741 388 PANTHER PTHR21716 5 365 2.1E-70 T 16-09-2016 IPR002549 Transmembrane protein TqsA-like BER92_RS03920 4564b22f0cddbc69eddebd8e540f0406 167 PANTHER PTHR39560:SF1 1 166 2.4E-31 T 16-09-2016 BER92_RS03920 4564b22f0cddbc69eddebd8e540f0406 167 SUPERFAMILY SSF140931 8 164 7.06E-39 T 16-09-2016 IPR003812 Fido domain BER92_RS03920 4564b22f0cddbc69eddebd8e540f0406 167 Pfam PF02661 Fic/DOC family 22 121 2.1E-20 T 16-09-2016 IPR003812 Fido domain BER92_RS03920 4564b22f0cddbc69eddebd8e540f0406 167 Gene3D G3DSA:1.10.3290.10 4 165 2.0E-47 T 16-09-2016 IPR003812 Fido domain BER92_RS03920 4564b22f0cddbc69eddebd8e540f0406 167 PANTHER PTHR39560 1 166 2.4E-31 T 16-09-2016 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 449 464 1.6E-26 T 16-09-2016 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 466 481 1.6E-26 T 16-09-2016 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 294 313 1.6E-26 T 16-09-2016 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 502 514 1.6E-26 T 16-09-2016 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 449 467 - T 16-09-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 Gene3D G3DSA:1.10.274.10 25 134 1.3E-26 T 16-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 SUPERFAMILY SSF52009 116 234 3.66E-28 T 16-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 SUPERFAMILY SSF51621 249 544 2.33E-95 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 PANTHER PTHR22931 39 552 2.2E-159 T 16-09-2016 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 252 543 3.2E-96 T 16-09-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 Pfam PF05524 PEP-utilising enzyme, N-terminal 6 129 5.3E-25 T 16-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 Pfam PF00391 PEP-utilising enzyme, mobile domain 155 226 2.6E-19 T 16-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 PANTHER PTHR22931:SF28 39 552 2.2E-159 T 16-09-2016 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 SUPERFAMILY SSF47831 27 145 3.4E-26 T 16-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 5 565 3.7E-150 T 16-09-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 Gene3D G3DSA:3.50.30.10 135 256 1.4E-35 T 16-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 Gene3D G3DSA:3.20.20.60 257 570 1.1E-98 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS13705 3a390f8a25de4126aac79c7ee5781959 576 PIRSF PIRSF000732 1 575 2.9E-197 T 16-09-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 BER92_RS04500 2c9f5a6ee5ebdf1274ceec163cfd2205 172 Pfam PF01609 Transposase DDE domain 11 169 2.3E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS04500 2c9f5a6ee5ebdf1274ceec163cfd2205 172 PANTHER PTHR30007:SF0 3 171 2.2E-29 T 16-09-2016 BER92_RS04500 2c9f5a6ee5ebdf1274ceec163cfd2205 172 PANTHER PTHR30007 3 171 2.2E-29 T 16-09-2016 BER92_RS03540 e4a8ba3aad10af63904a1c987023e05c 447 PANTHER PTHR10804 6 439 2.4E-158 T 16-09-2016 BER92_RS03540 e4a8ba3aad10af63904a1c987023e05c 447 Pfam PF05195 Aminopeptidase P, N-terminal domain 12 131 4.1E-38 T 16-09-2016 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 BER92_RS03540 e4a8ba3aad10af63904a1c987023e05c 447 SMART SM01011 7 141 4.8E-64 T 16-09-2016 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 BER92_RS03540 e4a8ba3aad10af63904a1c987023e05c 447 Gene3D G3DSA:3.40.350.10 6 183 4.5E-55 T 16-09-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BER92_RS03540 e4a8ba3aad10af63904a1c987023e05c 447 SUPERFAMILY SSF53092 7 179 6.28E-55 T 16-09-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal BER92_RS03540 e4a8ba3aad10af63904a1c987023e05c 447 SUPERFAMILY SSF55920 180 440 4.06E-81 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS03540 e4a8ba3aad10af63904a1c987023e05c 447 Gene3D G3DSA:3.90.230.10 184 436 8.7E-82 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS03540 e4a8ba3aad10af63904a1c987023e05c 447 PANTHER PTHR10804:SF17 6 439 2.4E-158 T 16-09-2016 BER92_RS03540 e4a8ba3aad10af63904a1c987023e05c 447 Pfam PF00557 Metallopeptidase family M24 186 417 4.4E-61 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS14100 f8f6039401558886f22a6a9a93091ec5 149 SUPERFAMILY SSF54690 11 144 2.22E-42 T 16-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS14100 f8f6039401558886f22a6a9a93091ec5 149 Gene3D G3DSA:3.90.1170.40 5 141 7.9E-45 T 16-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS14100 f8f6039401558886f22a6a9a93091ec5 149 Pfam PF02391 MoaE protein 14 125 1.3E-33 T 16-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS14100 f8f6039401558886f22a6a9a93091ec5 149 PANTHER PTHR23404:SF2 3 138 5.8E-39 T 16-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS14100 f8f6039401558886f22a6a9a93091ec5 149 PANTHER PTHR23404 3 138 5.8E-39 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 PIRSF PIRSF000144 1 768 0.0 T 16-09-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 SUPERFAMILY SSF50692 646 767 2.19E-17 T 16-09-2016 IPR009010 Aspartate decarboxylase-like domain BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 SUPERFAMILY SSF53706 47 630 5.37E-143 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 PANTHER PTHR11615:SF114 49 252 0.0 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 13 762 1.3E-283 T 16-09-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 PANTHER PTHR11615 49 252 0.0 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 Pfam PF00384 Molybdopterin oxidoreductase 109 494 3.1E-24 T 16-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 Gene3D G3DSA:3.40.50.740 395 626 1.2E-50 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 Gene3D G3DSA:3.40.50.740 109 182 1.2E-50 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 PANTHER PTHR11615 324 781 0.0 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 PANTHER PTHR11615:SF114 271 304 0.0 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 PANTHER PTHR11615:SF114 324 781 0.0 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 Gene3D G3DSA:2.40.40.20 644 762 2.5E-8 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 Pfam PF01568 Molydopterin dinucleotide binding domain 650 757 4.3E-10 T 16-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 Gene3D G3DSA:3.40.228.10 183 394 4.2E-51 T 16-09-2016 BER92_RS07480 3e231ea8dd80bac6dffa64923d297615 782 PANTHER PTHR11615 271 304 0.0 T 16-09-2016 BER92_RS11905 024911cd688b46895b489dbb0f34ed91 145 Pfam PF02657 Fe-S metabolism associated domain 21 138 3.1E-42 T 16-09-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 BER92_RS11905 024911cd688b46895b489dbb0f34ed91 145 PANTHER PTHR12735 1 141 1.7E-59 T 16-09-2016 BER92_RS11905 024911cd688b46895b489dbb0f34ed91 145 PANTHER PTHR12735:SF26 1 141 1.7E-59 T 16-09-2016 BER92_RS11905 024911cd688b46895b489dbb0f34ed91 145 SUPERFAMILY SSF82649 14 143 4.81E-42 T 16-09-2016 BER92_RS11905 024911cd688b46895b489dbb0f34ed91 145 Gene3D G3DSA:3.90.1010.10 9 143 5.0E-50 T 16-09-2016 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SUPERFAMILY SSF50249 104 186 2.24E-14 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SUPERFAMILY SSF50249 345 441 5.0E-22 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SUPERFAMILY SSF50249 256 372 3.36E-30 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PIRSF PIRSF002111 1 535 1.2E-213 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Pfam PF00575 S1 RNA binding domain 18 87 1.2E-4 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Pfam PF00575 S1 RNA binding domain 362 435 1.0E-19 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Pfam PF00575 S1 RNA binding domain 104 172 1.8E-10 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Pfam PF00575 S1 RNA binding domain 451 521 6.8E-13 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Pfam PF00575 S1 RNA binding domain 277 348 1.3E-22 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Pfam PF00575 S1 RNA binding domain 189 261 1.5E-22 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SUPERFAMILY SSF50249 1 113 1.64E-21 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PANTHER PTHR10724 1 515 2.6E-258 T 16-09-2016 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PRINTS PR00681 Ribosomal protein S1 signature 22 40 1.6E-86 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PRINTS PR00681 Ribosomal protein S1 signature 109 125 1.6E-86 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PRINTS PR00681 Ribosomal protein S1 signature 331 349 1.6E-86 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PRINTS PR00681 Ribosomal protein S1 signature 291 310 1.6E-86 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PRINTS PR00681 Ribosomal protein S1 signature 127 144 1.6E-86 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PRINTS PR00681 Ribosomal protein S1 signature 40 54 1.6E-86 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PRINTS PR00681 Ribosomal protein S1 signature 85 104 1.6E-86 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PRINTS PR00681 Ribosomal protein S1 signature 156 176 1.6E-86 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PRINTS PR00681 Ribosomal protein S1 signature 213 234 1.6E-86 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 PANTHER PTHR10724:SF6 1 515 2.6E-258 T 16-09-2016 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Gene3D G3DSA:2.40.50.140 103 173 5.5E-15 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SMART SM00316 363 435 1.1E-20 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SMART SM00316 104 172 7.1E-9 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SMART SM00316 191 261 1.3E-28 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SMART SM00316 450 521 1.4E-15 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SMART SM00316 276 348 1.2E-27 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SMART SM00316 20 88 5.7E-6 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Gene3D G3DSA:2.40.50.140 281 363 3.2E-31 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Gene3D G3DSA:2.40.50.140 193 279 7.5E-31 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Gene3D G3DSA:2.40.50.140 22 102 1.8E-10 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 521 4.1E-209 T 16-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SUPERFAMILY SSF50249 430 537 1.34E-20 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 SUPERFAMILY SSF50249 191 277 4.62E-27 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Gene3D G3DSA:2.40.50.140 449 532 4.2E-19 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09010 b9db3f7fb40c2250bdd7cfa17c3ef39f 561 Gene3D G3DSA:2.40.50.140 364 445 9.4E-26 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 PANTHER PTHR11645 17 284 2.6E-108 T 16-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 15 279 26.3 T 16-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 SUPERFAMILY SSF51735 17 172 3.72E-35 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 Gene3D G3DSA:3.40.50.720 17 172 5.5E-44 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 17 277 8.7E-83 T 16-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 175 277 9.9E-34 T 16-09-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 PANTHER PTHR11645:SF0 17 284 2.6E-108 T 16-09-2016 BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 PIRSF PIRSF000193 15 282 4.3E-71 T 16-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 234 257 - T 16-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 SUPERFAMILY SSF48179 174 279 8.5E-33 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 Gene3D G3DSA:1.10.3730.10 175 277 1.0E-35 T 16-09-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 BER92_RS13460 607acdc40e7fdba57008365cd7ab347e 284 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 17 111 4.6E-18 T 16-09-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal BER92_RS07120 c166b3a92f434d6484abeba538435d5d 84 Pfam PF10982 Protein of unknown function (DUF2789) 1 75 6.3E-30 T 16-09-2016 IPR021250 Protein of unknown function DUF2789 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PRINTS PR00344 Bacterial sensor protein C-terminal signature 964 982 1.6E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PRINTS PR00344 Bacterial sensor protein C-terminal signature 988 1001 1.6E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PRINTS PR00344 Bacterial sensor protein C-terminal signature 947 957 1.6E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PRINTS PR00344 Bacterial sensor protein C-terminal signature 929 943 1.6E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PANTHER PTHR24423:SF439 51 98 7.0E-244 T 16-09-2016 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PANTHER PTHR24423:SF439 9 33 7.0E-244 T 16-09-2016 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 Gene3D G3DSA:3.40.50.2300 1022 1142 2.3E-19 T 16-09-2016 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 SUPERFAMILY SSF55874 839 1002 1.19E-38 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 SMART SM00448 1026 1137 2.0E-13 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 Gene3D G3DSA:3.30.450.20 628 751 1.5E-14 T 16-09-2016 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 Gene3D G3DSA:1.10.287.130 776 845 5.5E-10 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 Pfam PF00512 His Kinase A (phospho-acceptor) domain 783 849 1.4E-11 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 Gene3D G3DSA:3.30.565.10 851 1003 1.2E-36 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 894 1001 5.8E-18 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PANTHER PTHR24423 51 98 7.0E-244 T 16-09-2016 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 SUPERFAMILY SSF47384 768 850 1.33E-13 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PANTHER PTHR24423 635 1140 7.0E-244 T 16-09-2016 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PANTHER PTHR24423 9 33 7.0E-244 T 16-09-2016 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 SMART SM00388 783 849 1.4E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 SUPERFAMILY SSF52172 1025 1142 5.27E-19 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 SMART SM00387 893 1004 7.0E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 PANTHER PTHR24423:SF439 635 1140 7.0E-244 T 16-09-2016 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 Pfam PF12860 PAS fold 643 757 1.1E-43 T 16-09-2016 BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 SUPERFAMILY SSF55785 628 750 5.14E-10 T 16-09-2016 IPR000014 PAS domain BER92_RS01095 cae0a62bffc784b976ca4e805387c9fd 1146 Pfam PF00072 Response regulator receiver domain 1028 1135 1.8E-10 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 PANTHER PTHR22762 67 102 0.0 T 16-09-2016 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 PANTHER PTHR22762 371 960 0.0 T 16-09-2016 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 Pfam PF17137 Domain of unknown function (DUF5110) 860 928 1.1E-19 T 16-09-2016 IPR033403 Domain of unknown function DUF5110 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 SUPERFAMILY SSF56988 276 351 2.62E-11 T 16-09-2016 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 PANTHER PTHR22762 128 218 0.0 T 16-09-2016 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 SUPERFAMILY SSF51445 399 754 1.11E-47 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 Pfam PF07691 PA14 domain 275 351 1.5E-9 T 16-09-2016 IPR011658 PA14 domain BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 SUPERFAMILY SSF74650 57 216 3.14E-25 T 16-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 SMART SM00758 238 376 2.2E-27 T 16-09-2016 IPR011658 PA14 domain BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 Pfam PF16338 Domain of unknown function (DUF4968) 55 135 3.5E-13 T 16-09-2016 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 Gene3D G3DSA:3.90.182.10 228 351 8.7E-18 T 16-09-2016 IPR011658 PA14 domain BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 PANTHER PTHR22762:SF86 67 102 0.0 T 16-09-2016 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 PANTHER PTHR22762:SF86 128 218 0.0 T 16-09-2016 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 PANTHER PTHR22762:SF86 371 960 0.0 T 16-09-2016 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 Pfam PF01055 Glycosyl hydrolases family 31 388 844 1.6E-124 T 16-09-2016 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 BER92_RS10880 bd3d3157ceae7e8dac185b0754e8228b 967 SUPERFAMILY SSF51011 760 839 1.44E-21 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 PANTHER PTHR32552 613 664 3.5E-49 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 Pfam PF13620 Carboxypeptidase regulatory-like domain 39 113 5.3E-11 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 SUPERFAMILY SSF49452 32 113 6.08E-8 T 16-09-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 PANTHER PTHR32552 717 738 3.5E-49 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 SUPERFAMILY SSF56935 793 989 4.03E-54 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 SUPERFAMILY SSF56935 120 589 4.03E-54 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 SUPERFAMILY SSF56935 719 766 4.03E-54 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 SUPERFAMILY SSF56935 618 659 4.03E-54 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 PANTHER PTHR32552 355 586 3.5E-49 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 PANTHER PTHR32552 85 319 3.5E-49 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 Gene3D G3DSA:2.170.130.10 144 248 3.5E-4 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 Gene3D G3DSA:2.60.40.1120 39 112 2.2E-6 T 16-09-2016 IPR014766 Carboxypeptidase, regulatory domain BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 PANTHER PTHR32552:SF0 717 738 3.5E-49 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 PANTHER PTHR32552:SF0 613 664 3.5E-49 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 PANTHER PTHR32552:SF0 355 586 3.5E-49 T 16-09-2016 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 Gene3D G3DSA:2.40.170.20 255 579 1.6E-43 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 Gene3D G3DSA:2.40.170.20 621 683 1.6E-43 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 Gene3D G3DSA:2.40.170.20 724 989 1.6E-43 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS08940 407293a1e28a2637fa03adeab46bcb42 992 PANTHER PTHR32552:SF0 85 319 3.5E-49 T 16-09-2016 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 PIRSF PIRSF003095 1 428 5.9E-103 T 16-09-2016 IPR005215 Trigger factor GO:0015031 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 Pfam PF05697 Bacterial trigger factor protein (TF) 1 140 3.7E-36 T 16-09-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 PANTHER PTHR30560:SF3 1 430 5.3E-117 T 16-09-2016 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 SUPERFAMILY SSF109998 244 428 2.49E-38 T 16-09-2016 IPR027304 Trigger factor/SurA domain BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 SUPERFAMILY SSF102735 1 126 5.1E-31 T 16-09-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 260 413 3.4E-36 T 16-09-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 PANTHER PTHR30560 1 430 5.3E-117 T 16-09-2016 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 Hamap MF_00303 Trigger factor [tig]. 1 418 17.553 T 16-09-2016 IPR005215 Trigger factor GO:0015031 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 TIGRFAM TIGR00115 tig: trigger factor 11 411 1.1E-107 T 16-09-2016 IPR005215 Trigger factor GO:0015031 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 SUPERFAMILY SSF54534 128 242 5.89E-16 T 16-09-2016 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 Gene3D G3DSA:1.10.3120.10 200 388 1.1E-44 T 16-09-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 BER92_RS14355 a7644fb90343652cd12f9015b4dc8c7a 430 Gene3D G3DSA:3.30.70.1050 1 111 2.1E-31 T 16-09-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 Gene3D G3DSA:3.40.50.300 256 389 3.9E-32 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 SMART SM00487 19 236 1.4E-30 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 SUPERFAMILY SSF52540 31 212 4.63E-49 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 SUPERFAMILY SSF52540 248 374 4.63E-49 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 PANTHER PTHR24031 11 388 2.6E-77 T 16-09-2016 BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 PANTHER PTHR24031:SF336 411 459 2.6E-77 T 16-09-2016 BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 Pfam PF08494 DEAD/H associated 633 835 2.4E-51 T 16-09-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 Pfam PF00270 DEAD/DEAH box helicase 24 210 1.2E-26 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 SMART SM00490 290 373 6.4E-18 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 PANTHER PTHR24031 411 459 2.6E-77 T 16-09-2016 BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 PANTHER PTHR24031 1437 1442 2.6E-77 T 16-09-2016 BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 Gene3D G3DSA:3.40.50.300 12 208 6.5E-44 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 Pfam PF00271 Helicase conserved C-terminal domain 266 371 5.0E-18 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 PANTHER PTHR24031:SF336 1437 1442 2.6E-77 T 16-09-2016 BER92_RS06910 1fd8e96900b742dee97b91418600384e 1464 PANTHER PTHR24031:SF336 11 388 2.6E-77 T 16-09-2016 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 Pfam PF01583 Adenylylsulphate kinase 489 641 2.1E-69 T 16-09-2016 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 Gene3D G3DSA:2.40.30.10 270 350 2.5E-15 T 16-09-2016 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 486 658 37.934 T 16-09-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 SUPERFAMILY SSF50447 267 355 2.29E-21 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 Gene3D G3DSA:3.40.50.300 467 655 1.4E-82 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 53 457 3.2E-206 T 16-09-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 SUPERFAMILY SSF52540 45 260 4.21E-57 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 Pfam PF00009 Elongation factor Tu GTP binding domain 52 238 4.4E-41 T 16-09-2016 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 Gene3D G3DSA:2.40.30.10 354 457 7.1E-9 T 16-09-2016 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 472 654 3.4E-76 T 16-09-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 PANTHER PTHR11055 467 654 4.4E-115 T 16-09-2016 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 108 123 - T 16-09-2016 IPR031157 Tr-type G domain, conserved site BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 SUPERFAMILY SSF52540 484 654 1.13E-35 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 Gene3D G3DSA:3.40.50.300 45 261 5.6E-65 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 SUPERFAMILY SSF50465 356 457 1.87E-33 T 16-09-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 PRINTS PR00315 GTP-binding elongation factor signature 54 67 2.3E-13 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 PRINTS PR00315 GTP-binding elongation factor signature 151 162 2.3E-13 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 PRINTS PR00315 GTP-binding elongation factor signature 115 123 2.3E-13 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 PRINTS PR00315 GTP-binding elongation factor signature 135 145 2.3E-13 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 PRINTS PR00315 GTP-binding elongation factor signature 188 197 2.3E-13 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS16710 01ee997fb787e414a10c626c7d34919d 658 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 44 487 51.819 T 16-09-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 Gene3D G3DSA:1.10.1750.10 341 412 1.2E-28 T 16-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 4 412 7.4E-153 T 16-09-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 Pfam PF11638 DnaA N-terminal domain 1 62 6.2E-15 T 16-09-2016 IPR024633 DnaA N-terminal domain BER92_RS19505 a93105256e3cef6551b65f29445436af 412 Gene3D G3DSA:3.40.50.300 101 271 8.3E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19505 a93105256e3cef6551b65f29445436af 412 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 412 28.114 T 16-09-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 SMART SM00382 139 270 6.0E-5 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS19505 a93105256e3cef6551b65f29445436af 412 SMART SM00760 350 412 6.0E-27 T 16-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 PANTHER PTHR30050 1 412 9.6E-198 T 16-09-2016 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 140 160 5.2E-42 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS19505 a93105256e3cef6551b65f29445436af 412 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 204 218 5.2E-42 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS19505 a93105256e3cef6551b65f29445436af 412 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 400 412 5.2E-42 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS19505 a93105256e3cef6551b65f29445436af 412 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 172 186 5.2E-42 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS19505 a93105256e3cef6551b65f29445436af 412 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 238 265 5.2E-42 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS19505 a93105256e3cef6551b65f29445436af 412 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 353 412 6.1E-25 T 16-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 SUPERFAMILY SSF48295 339 412 2.43E-25 T 16-09-2016 IPR010921 Trp repressor/replication initiator GO:0043565 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 PANTHER PTHR30050:SF2 1 412 9.6E-198 T 16-09-2016 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 Gene3D G3DSA:1.10.8.60 273 340 2.3E-27 T 16-09-2016 BER92_RS19505 a93105256e3cef6551b65f29445436af 412 SUPERFAMILY SSF52540 107 318 1.53E-38 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19505 a93105256e3cef6551b65f29445436af 412 Pfam PF00308 Bacterial dnaA protein 106 324 2.3E-84 T 16-09-2016 IPR013317 Chromosomal replication initiator protein DnaA BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 Pfam PF02803 Thiolase, C-terminal domain 278 399 5.2E-45 T 16-09-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 Gene3D G3DSA:3.40.47.10 285 400 5.4E-65 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 Gene3D G3DSA:3.40.47.10 149 189 5.4E-65 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 SUPERFAMILY SSF53901 279 399 4.64E-43 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 PANTHER PTHR18919:SF69 3 401 1.4E-178 T 16-09-2016 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 PIRSF PIRSF000429 2 401 2.7E-124 T 16-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 Pfam PF00108 Thiolase, N-terminal domain 9 271 2.1E-71 T 16-09-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 399 1.1E-138 T 16-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 Gene3D G3DSA:3.40.47.10 8 130 3.4E-64 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 Gene3D G3DSA:3.40.47.10 190 284 3.4E-64 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 SUPERFAMILY SSF53901 5 275 4.26E-73 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 16-09-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 16-09-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 16-09-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 BER92_RS10110 8efb19ab7021e2521d906c9de70659a2 401 PANTHER PTHR18919 3 401 1.4E-178 T 16-09-2016 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 SUPERFAMILY SSF90123 154 461 7.46E-66 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 Pfam PF03412 Peptidase C39 family 18 141 5.1E-12 T 16-09-2016 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 PANTHER PTHR24221 4 719 0.0 T 16-09-2016 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 Pfam PF00664 ABC transporter transmembrane region 167 435 9.9E-52 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 Gene3D G3DSA:3.90.70.10 19 141 1.4E-31 T 16-09-2016 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 PANTHER PTHR24221:SF246 4 719 0.0 T 16-09-2016 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 SMART SM00382 506 692 6.1E-19 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 ProSitePatterns PS00211 ABC transporters family signature. 618 632 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 Gene3D G3DSA:1.20.1560.10 154 461 3.8E-79 T 16-09-2016 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 SUPERFAMILY SSF52540 470 717 1.25E-88 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 Gene3D G3DSA:3.40.50.300 480 711 4.4E-83 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 24 718 0.0 T 16-09-2016 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 BER92_RS03100 f9a490b04b9d093529cb0ad2bbb5a00a 721 Pfam PF00005 ABC transporter 497 646 6.9E-35 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS03525 52afafd660d83ac248864934a65f3708 99 PANTHER PTHR34981:SF1 3 99 2.3E-26 T 16-09-2016 BER92_RS03525 52afafd660d83ac248864934a65f3708 99 PANTHER PTHR34981 3 99 2.3E-26 T 16-09-2016 BER92_RS03525 52afafd660d83ac248864934a65f3708 99 SUPERFAMILY SSF102829 7 94 2.88E-23 T 16-09-2016 IPR007838 Cell division protein ZapA-like BER92_RS03525 52afafd660d83ac248864934a65f3708 99 Pfam PF05164 Cell division protein ZapA 7 91 3.0E-20 T 16-09-2016 IPR007838 Cell division protein ZapA-like BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 Pfam PF01628 HrcA protein C terminal domain 104 323 5.1E-57 T 16-09-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 SUPERFAMILY SSF46785 1 82 1.75E-23 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 PANTHER PTHR34824 1 337 1.1E-115 T 16-09-2016 BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 330 28.217 T 16-09-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 2 73 2.0E-5 T 16-09-2016 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 Gene3D G3DSA:3.30.450.40 176 337 7.3E-40 T 16-09-2016 IPR029016 GAF domain-like BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 3 336 6.2E-107 T 16-09-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 Gene3D G3DSA:1.10.10.10 1 82 2.1E-34 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 SUPERFAMILY SSF55781 71 338 7.45E-59 T 16-09-2016 IPR029016 GAF domain-like BER92_RS07960 c20637a51b5aee18a48cfb71947846eb 343 PIRSF PIRSF005485 1 340 1.1E-112 T 16-09-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 BER92_RS05275 24f0db70e28c55c18f4fe469e527c6fb 130 SUPERFAMILY SSF53137 17 130 6.28E-46 T 16-09-2016 BER92_RS05275 24f0db70e28c55c18f4fe469e527c6fb 130 PANTHER PTHR11759 12 130 7.0E-68 T 16-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BER92_RS05275 24f0db70e28c55c18f4fe469e527c6fb 130 PIRSF PIRSF002131 1 130 2.6E-52 T 16-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BER92_RS05275 24f0db70e28c55c18f4fe469e527c6fb 130 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 11 127 3.5E-54 T 16-09-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05275 24f0db70e28c55c18f4fe469e527c6fb 130 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 130 32.613 T 16-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BER92_RS05275 24f0db70e28c55c18f4fe469e527c6fb 130 ProSitePatterns PS00054 Ribosomal protein S11 signature. 98 120 - T 16-09-2016 IPR018102 Ribosomal S11, conserved site BER92_RS05275 24f0db70e28c55c18f4fe469e527c6fb 130 Gene3D G3DSA:3.30.420.80 7 130 2.1E-52 T 16-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BER92_RS05275 24f0db70e28c55c18f4fe469e527c6fb 130 Pfam PF00411 Ribosomal protein S11 20 129 4.2E-50 T 16-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BER92_RS06755 f0fc6426907825a80b699f21719de1ab 461 Pfam PF06114 Domain of unknown function (DUF955) 204 312 3.9E-20 T 16-09-2016 IPR010359 HTH domain, IrrE-type BER92_RS06755 f0fc6426907825a80b699f21719de1ab 461 SMART SM00530 15 69 3.0E-10 T 16-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BER92_RS06755 f0fc6426907825a80b699f21719de1ab 461 SUPERFAMILY SSF47413 7 64 2.01E-13 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS06755 f0fc6426907825a80b699f21719de1ab 461 Pfam PF13560 Helix-turn-helix domain 11 64 3.0E-12 T 16-09-2016 BER92_RS06755 f0fc6426907825a80b699f21719de1ab 461 Gene3D G3DSA:1.10.260.40 4 74 7.4E-18 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS06755 f0fc6426907825a80b699f21719de1ab 461 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 313 454 9.1E-61 T 16-09-2016 IPR018653 Domain of unknown function DUF2083,transcriptional regulator BER92_RS06755 f0fc6426907825a80b699f21719de1ab 461 PIRSF PIRSF019251 7 457 1.3E-154 T 16-09-2016 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 BER92_RS06755 f0fc6426907825a80b699f21719de1ab 461 PANTHER PTHR10245 8 74 1.2E-12 T 16-09-2016 BER92_RS00220 102f897abab785433f3996971b0ecead 280 Gene3D G3DSA:3.40.50.2300 14 135 6.3E-21 T 16-09-2016 BER92_RS00220 102f897abab785433f3996971b0ecead 280 Pfam PF00072 Response regulator receiver domain 16 129 2.3E-13 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS00220 102f897abab785433f3996971b0ecead 280 Pfam PF00072 Response regulator receiver domain 143 264 2.4E-16 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS00220 102f897abab785433f3996971b0ecead 280 SUPERFAMILY SSF52172 14 134 1.21E-21 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS00220 102f897abab785433f3996971b0ecead 280 Gene3D G3DSA:3.40.50.2300 141 276 1.2E-24 T 16-09-2016 BER92_RS00220 102f897abab785433f3996971b0ecead 280 SMART SM00448 141 264 4.2E-20 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS00220 102f897abab785433f3996971b0ecead 280 SMART SM00448 14 129 1.7E-9 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS00220 102f897abab785433f3996971b0ecead 280 PANTHER PTHR26402:SF292 141 276 7.2E-21 T 16-09-2016 BER92_RS00220 102f897abab785433f3996971b0ecead 280 PANTHER PTHR26402 141 276 7.2E-21 T 16-09-2016 BER92_RS00220 102f897abab785433f3996971b0ecead 280 SUPERFAMILY SSF52172 141 276 8.54E-24 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS14635 bc95bbba74cef952bf8f87cceb914295 388 SUPERFAMILY SSF52440 175 280 1.24E-36 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS14635 bc95bbba74cef952bf8f87cceb914295 388 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 386 9.5E-146 T 16-09-2016 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain BER92_RS14635 bc95bbba74cef952bf8f87cceb914295 388 SUPERFAMILY SSF56059 1 169 1.66E-81 T 16-09-2016 BER92_RS14635 bc95bbba74cef952bf8f87cceb914295 388 SUPERFAMILY SSF56059 268 385 1.66E-81 T 16-09-2016 BER92_RS14635 bc95bbba74cef952bf8f87cceb914295 388 PANTHER PTHR30094:SF0 6 387 1.1E-132 T 16-09-2016 BER92_RS14635 bc95bbba74cef952bf8f87cceb914295 388 PANTHER PTHR30094 6 387 1.1E-132 T 16-09-2016 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 Pfam PF12729 Four helix bundle sensory module for signal transduction 9 185 4.5E-18 T 16-09-2016 IPR024478 4HB MCP domain BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 PANTHER PTHR32089:SF63 158 248 4.2E-163 T 16-09-2016 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 PANTHER PTHR32089:SF63 430 698 4.2E-163 T 16-09-2016 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 501 694 1.6E-61 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 Gene3D G3DSA:1.10.287.950 463 667 3.1E-62 T 16-09-2016 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 SUPERFAMILY SSF58104 415 698 5.23E-72 T 16-09-2016 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 SMART SM00304 214 266 1.4E-10 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 SMART SM00304 395 447 40.0 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 PANTHER PTHR32089 158 248 4.2E-163 T 16-09-2016 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 PANTHER PTHR32089 430 698 4.2E-163 T 16-09-2016 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 Pfam PF00672 HAMP domain 195 262 4.3E-15 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 SUPERFAMILY SSF158472 214 265 4.32E-11 T 16-09-2016 BER92_RS09505 8f5c4c449b7abd5a3da91a903e1d1a4c 752 SMART SM00283 448 695 1.8E-90 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 SMART SM00922 125 230 1.3E-16 T 16-09-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 Gene3D G3DSA:3.30.390.10 9 112 9.1E-48 T 16-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 PANTHER PTHR13794:SF4 1 382 2.0E-150 T 16-09-2016 BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 180 211 - T 16-09-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 82 107 - T 16-09-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 SUPERFAMILY SSF54826 1 112 1.62E-31 T 16-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 SUPERFAMILY SSF51604 95 359 8.78E-71 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 7 107 7.0E-29 T 16-09-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 Pfam PF13378 Enolase C-terminal domain-like 130 355 1.2E-54 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 PANTHER PTHR13794 1 382 2.0E-150 T 16-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 BER92_RS10935 e38a6ac9be8972011f4b1b5bbf853500 382 Gene3D G3DSA:3.20.20.120 113 349 1.5E-75 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS00995 a9f5996166c3752977d946cc542f353a 378 Pfam PF01476 LysM domain 32 77 4.0E-13 T 16-09-2016 IPR018392 LysM domain BER92_RS00995 a9f5996166c3752977d946cc542f353a 378 SUPERFAMILY SSF54106 30 78 1.11E-7 T 16-09-2016 IPR018392 LysM domain BER92_RS00995 a9f5996166c3752977d946cc542f353a 378 Gene3D G3DSA:3.10.350.10 30 78 1.3E-8 T 16-09-2016 IPR018392 LysM domain BER92_RS00995 a9f5996166c3752977d946cc542f353a 378 SMART SM00257 31 79 1.1E-5 T 16-09-2016 IPR018392 LysM domain BER92_RS00995 a9f5996166c3752977d946cc542f353a 378 PANTHER PTHR34700:SF2 9 337 9.6E-104 T 16-09-2016 BER92_RS00995 a9f5996166c3752977d946cc542f353a 378 PANTHER PTHR34700 9 337 9.6E-104 T 16-09-2016 BER92_RS07100 9d0a1d44047b0b8cbd23ddbf04907a43 253 SUPERFAMILY SSF81901 87 165 6.02E-6 T 16-09-2016 BER92_RS07100 9d0a1d44047b0b8cbd23ddbf04907a43 253 Gene3D G3DSA:1.25.40.10 87 165 6.5E-7 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS07100 9d0a1d44047b0b8cbd23ddbf04907a43 253 Pfam PF08238 Sel1 repeat 15 29 5.0 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS07100 9d0a1d44047b0b8cbd23ddbf04907a43 253 Pfam PF08238 Sel1 repeat 31 65 0.25 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS07100 9d0a1d44047b0b8cbd23ddbf04907a43 253 Pfam PF08238 Sel1 repeat 107 135 1.9 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS07100 9d0a1d44047b0b8cbd23ddbf04907a43 253 Pfam PF08238 Sel1 repeat 137 159 80.0 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS07100 9d0a1d44047b0b8cbd23ddbf04907a43 253 SUPERFAMILY SSF81901 4 73 2.49E-9 T 16-09-2016 BER92_RS07100 9d0a1d44047b0b8cbd23ddbf04907a43 253 Gene3D G3DSA:1.25.40.10 2 73 2.0E-10 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 SUPERFAMILY SSF55874 306 468 1.83E-25 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 PANTHER PTHR24423 198 468 1.9E-100 T 16-09-2016 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 PANTHER PTHR24423 2 17 1.9E-100 T 16-09-2016 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 PANTHER PTHR24423:SF496 198 468 1.9E-100 T 16-09-2016 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 SMART SM00387 358 471 3.2E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 PANTHER PTHR24423:SF496 2 17 1.9E-100 T 16-09-2016 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 Gene3D G3DSA:1.10.287.130 249 304 1.3E-5 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 Gene3D G3DSA:3.30.565.10 321 468 2.8E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 469 4.3E-14 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 SUPERFAMILY SSF47384 239 304 2.75E-5 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 SMART SM00388 256 313 0.0084 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 468 7.6E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 7.6E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS18480 fc1a0f84c12dbf42e3f779d02b6d500d 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 448 7.6E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 PANTHER PTHR21600:SF24 4 239 3.7E-128 T 16-09-2016 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 SMART SM00363 3 65 1.1E-6 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 SUPERFAMILY SSF55120 68 230 1.85E-34 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 Pfam PF01479 S4 domain 4 48 4.5E-9 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 Gene3D G3DSA:3.10.290.10 4 57 2.6E-18 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 74 226 2.5E-45 T 16-09-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 105 119 - T 16-09-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 SUPERFAMILY SSF55174 4 55 1.3E-11 T 16-09-2016 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 Pfam PF00849 RNA pseudouridylate synthase 70 193 9.1E-13 T 16-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS13060 4a0f3b2c3ae62160b43a6e2de34d552f 240 PANTHER PTHR21600 4 239 3.7E-128 T 16-09-2016 BER92_RS06760 1fed1e9b2517558ee30a938f8371b721 501 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 10 484 5.9E-220 T 16-09-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 BER92_RS06760 1fed1e9b2517558ee30a938f8371b721 501 Gene3D G3DSA:3.40.605.10 10 264 8.1E-96 T 16-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 BER92_RS06760 1fed1e9b2517558ee30a938f8371b721 501 PANTHER PTHR11699 1 488 0.0 T 16-09-2016 BER92_RS06760 1fed1e9b2517558ee30a938f8371b721 501 SUPERFAMILY SSF53720 7 487 1.18E-142 T 16-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 BER92_RS06760 1fed1e9b2517558ee30a938f8371b721 501 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 278 289 - T 16-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 BER92_RS06760 1fed1e9b2517558ee30a938f8371b721 501 Pfam PF00171 Aldehyde dehydrogenase family 20 480 4.5E-139 T 16-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 BER92_RS06760 1fed1e9b2517558ee30a938f8371b721 501 PANTHER PTHR11699:SF181 1 488 0.0 T 16-09-2016 BER92_RS06760 1fed1e9b2517558ee30a938f8371b721 501 Gene3D G3DSA:3.40.309.10 265 445 9.6E-65 T 16-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 BER92_RS04115 72a4280d9388a7cce071f139e9d92ef1 299 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 299 146.228 T 16-09-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 BER92_RS04115 72a4280d9388a7cce071f139e9d92ef1 299 Gene3D G3DSA:3.60.15.10 1 299 4.6E-103 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS04115 72a4280d9388a7cce071f139e9d92ef1 299 Pfam PF12706 Beta-lactamase superfamily domain 50 266 1.5E-52 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS04115 72a4280d9388a7cce071f139e9d92ef1 299 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 2 299 1.0E-135 T 16-09-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 BER92_RS04115 72a4280d9388a7cce071f139e9d92ef1 299 SUPERFAMILY SSF56281 1 299 5.69E-52 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS02840 cf4e7910b431b7da5b998c3e527ee528 467 Gene3D G3DSA:3.20.140.10 6 385 2.1E-6 T 16-09-2016 BER92_RS02840 cf4e7910b431b7da5b998c3e527ee528 467 SUPERFAMILY SSF51690 171 464 4.12E-46 T 16-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 BER92_RS02840 cf4e7910b431b7da5b998c3e527ee528 467 PIRSF PIRSF005943 1 467 3.5E-197 T 16-09-2016 IPR016471 Nicotinamide phosphoribosyl transferase BER92_RS02840 cf4e7910b431b7da5b998c3e527ee528 467 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 172 417 3.2E-67 T 16-09-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 BER92_RS02840 cf4e7910b431b7da5b998c3e527ee528 467 PANTHER PTHR11098:SF2 5 467 2.8E-246 T 16-09-2016 BER92_RS02840 cf4e7910b431b7da5b998c3e527ee528 467 PANTHER PTHR11098 5 467 2.8E-246 T 16-09-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 PANTHER PTHR24095:SF137 8 1031 5.6E-304 T 16-09-2016 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 ProSitePatterns PS00455 Putative AMP-binding domain signature. 600 611 - T 16-09-2016 IPR020845 AMP-binding, conserved site BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Gene3D G3DSA:3.40.50.1820 1234 1312 1.0E-44 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Gene3D G3DSA:3.40.50.1820 1035 1155 1.0E-44 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 ProSitePatterns PS00012 Phosphopantetheine attachment site. 985 1000 - T 16-09-2016 IPR006162 Phosphopantetheine attachment site BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Gene3D G3DSA:2.30.38.10 765 842 3.2E-25 T 16-09-2016 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Gene3D G3DSA:3.40.50.980 459 621 1.2E-36 T 16-09-2016 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Pfam PF13193 AMP-binding enzyme C-terminal domain 860 936 2.9E-11 T 16-09-2016 IPR025110 AMP-binding enzyme C-terminal domain BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 SUPERFAMILY SSF52777 11 184 3.78E-31 T 16-09-2016 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 SUPERFAMILY SSF52777 190 451 4.11E-38 T 16-09-2016 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 SUPERFAMILY SSF47336 954 1026 2.09E-20 T 16-09-2016 IPR009081 Phosphopantetheine binding ACP domain BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 SMART SM00824 Thioesterase 1054 1306 0.0012 T 16-09-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Pfam PF00668 Condensation domain 8 300 7.4E-42 T 16-09-2016 IPR001242 Condensation domain BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 SUPERFAMILY SSF56801 422 974 1.26E-148 T 16-09-2016 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 486 876 8.7E-123 T 16-09-2016 IPR010071 Amino acid adenylation domain BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 SMART SM00823 Phosphopantetheine attachment site 957 1030 1.9E-7 T 16-09-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Gene3D G3DSA:3.40.50.980 622 764 1.4E-37 T 16-09-2016 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 PANTHER PTHR24095 8 1031 5.6E-304 T 16-09-2016 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Pfam PF00501 AMP-binding enzyme 467 852 8.3E-85 T 16-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Gene3D G3DSA:3.30.300.30 848 964 8.0E-38 T 16-09-2016 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Pfam PF00550 Phosphopantetheine attachment site 963 1026 1.0E-14 T 16-09-2016 IPR009081 Phosphopantetheine binding ACP domain BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Pfam PF00975 Thioesterase domain 1052 1295 2.1E-26 T 16-09-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 SUPERFAMILY SSF53474 1030 1304 3.81E-52 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18470 1e0e9b760dbdde57d900c3ada0a2145b 1328 Gene3D G3DSA:1.10.1200.10 965 1030 3.7E-27 T 16-09-2016 IPR009081 Phosphopantetheine binding ACP domain BER92_RS06825 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06825 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06825 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS06825 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS06825 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS17565 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS17565 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS17565 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS17565 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS17565 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS06735 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06735 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06735 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS06735 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS06735 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS05580 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS05580 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS05580 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS05580 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS05580 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS10670 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10670 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10670 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS10670 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS10670 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS16375 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16375 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16375 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS16375 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS16375 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS16860 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16860 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16860 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS16860 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS16860 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS05435 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS05435 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS05435 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS05435 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS05435 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS01290 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS01290 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS01290 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS01290 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS01290 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS02935 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS02935 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS02935 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS02935 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS02935 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS07670 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS07670 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS07670 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS07670 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS07670 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS09780 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09780 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09780 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS09780 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS09780 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS19030 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS19030 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS19030 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS19030 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS19030 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS08075 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS08075 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS08075 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS08075 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS08075 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS07495 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS07495 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS07495 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS07495 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS07495 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS16690 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16690 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16690 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS16690 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS16690 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS11820 25844a12387664b053880467c3b8c82a 90 SUPERFAMILY SSF46689 1 89 1.38E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS11820 25844a12387664b053880467c3b8c82a 90 Gene3D G3DSA:1.10.10.60 7 86 4.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS11820 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215 1 89 8.2E-24 T 16-09-2016 BER92_RS11820 25844a12387664b053880467c3b8c82a 90 PANTHER PTHR33215:SF1 1 89 8.2E-24 T 16-09-2016 BER92_RS11820 25844a12387664b053880467c3b8c82a 90 Pfam PF01527 Transposase 4 70 3.1E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS15270 c7fb11f2a38a1c421b8e680583df5da0 253 PIRSF PIRSF009160 1 253 5.5E-99 T 16-09-2016 IPR010539 Protein of unknown function UCP009160 BER92_RS15270 c7fb11f2a38a1c421b8e680583df5da0 253 Pfam PF12811 Bax inhibitor 1 like 24 251 1.5E-78 T 16-09-2016 IPR010539 Protein of unknown function UCP009160 BER92_RS15270 c7fb11f2a38a1c421b8e680583df5da0 253 PANTHER PTHR41282:SF1 1 253 8.0E-100 T 16-09-2016 BER92_RS15270 c7fb11f2a38a1c421b8e680583df5da0 253 PANTHER PTHR41282 1 253 8.0E-100 T 16-09-2016 BER92_RS11130 160b119892d146ab3f78a65d52571dc7 321 Pfam PF00589 Phage integrase family 134 295 1.3E-13 T 16-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS11130 160b119892d146ab3f78a65d52571dc7 321 Gene3D G3DSA:1.10.150.130 6 97 2.7E-24 T 16-09-2016 IPR023109 Integrase/recombinase, N-terminal BER92_RS11130 160b119892d146ab3f78a65d52571dc7 321 SUPERFAMILY SSF56349 130 305 6.18E-36 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS11130 160b119892d146ab3f78a65d52571dc7 321 SUPERFAMILY SSF47823 7 96 4.71E-23 T 16-09-2016 IPR010998 Integrase, Lambda-type, N-terminal BER92_RS11130 160b119892d146ab3f78a65d52571dc7 321 Gene3D G3DSA:1.10.443.10 99 298 1.5E-52 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS17375 a459dcdf4453e462a4f92e4760301167 139 PANTHER PTHR33495:SF3 12 118 2.7E-25 T 16-09-2016 BER92_RS17375 a459dcdf4453e462a4f92e4760301167 139 Pfam PF01740 STAS domain 20 107 8.4E-13 T 16-09-2016 IPR002645 STAS domain BER92_RS17375 a459dcdf4453e462a4f92e4760301167 139 PANTHER PTHR33495 12 118 2.7E-25 T 16-09-2016 BER92_RS17375 a459dcdf4453e462a4f92e4760301167 139 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 17 96 6.5E-16 T 16-09-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 BER92_RS17375 a459dcdf4453e462a4f92e4760301167 139 SUPERFAMILY SSF52091 13 110 1.9E-19 T 16-09-2016 IPR002645 STAS domain BER92_RS17375 a459dcdf4453e462a4f92e4760301167 139 Gene3D G3DSA:3.30.750.24 13 115 7.2E-25 T 16-09-2016 IPR002645 STAS domain BER92_RS13135 a1a8f35b59863b49c2f9362cc27c8ccd 688 Gene3D G3DSA:2.170.130.10 59 185 4.2E-29 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS13135 a1a8f35b59863b49c2f9362cc27c8ccd 688 PANTHER PTHR30069 65 548 4.5E-55 T 16-09-2016 BER92_RS13135 a1a8f35b59863b49c2f9362cc27c8ccd 688 Gene3D G3DSA:2.40.170.20 191 686 3.0E-62 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS13135 a1a8f35b59863b49c2f9362cc27c8ccd 688 Pfam PF00593 TonB dependent receptor 436 686 5.6E-26 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS13135 a1a8f35b59863b49c2f9362cc27c8ccd 688 Pfam PF07715 TonB-dependent Receptor Plug Domain 78 180 4.4E-20 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS13135 a1a8f35b59863b49c2f9362cc27c8ccd 688 PANTHER PTHR30069:SF13 65 548 4.5E-55 T 16-09-2016 BER92_RS13135 a1a8f35b59863b49c2f9362cc27c8ccd 688 SUPERFAMILY SSF56935 62 688 4.95E-95 T 16-09-2016 BER92_RS16205 d9be3932ce82a13a125801400cf51202 87 Pfam PF13683 Integrase core domain 11 70 2.7E-25 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS16205 d9be3932ce82a13a125801400cf51202 87 SUPERFAMILY SSF53098 7 74 1.08E-13 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS16205 d9be3932ce82a13a125801400cf51202 87 PANTHER PTHR24559:SF185 12 84 1.4E-39 T 16-09-2016 BER92_RS16205 d9be3932ce82a13a125801400cf51202 87 PANTHER PTHR24559 12 84 1.4E-39 T 16-09-2016 BER92_RS16205 d9be3932ce82a13a125801400cf51202 87 Gene3D G3DSA:3.30.420.10 10 71 1.8E-14 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 9 336 5.6E-124 T 16-09-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 SUPERFAMILY SSF52418 77 339 1.96E-92 T 16-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 68 2.1E-14 T 16-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 PANTHER PTHR11922 1 344 7.8E-111 T 16-09-2016 BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 Gene3D G3DSA:3.40.1030.10 76 339 5.5E-104 T 16-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 SUPERFAMILY SSF47648 4 72 1.57E-18 T 16-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 Gene3D G3DSA:1.20.970.10 6 71 1.7E-26 T 16-09-2016 BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 Pfam PF00591 Glycosyl transferase family, a/b domain 77 327 1.5E-91 T 16-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 PANTHER PTHR11922:SF5 1 344 7.8E-111 T 16-09-2016 BER92_RS17975 7cbfca116df781232b38ace1282272c2 345 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 7 337 36.825 T 16-09-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 BER92_RS06410 5607dcb68497d7205ba649a8f4f98fd4 273 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 229 255 - T 16-09-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 BER92_RS06410 5607dcb68497d7205ba649a8f4f98fd4 273 PANTHER PTHR13773 3 264 8.6E-57 T 16-09-2016 BER92_RS06410 5607dcb68497d7205ba649a8f4f98fd4 273 Pfam PF01148 Cytidylyltransferase family 3 267 1.9E-67 T 16-09-2016 BER92_RS12465 38ee702e9417c08f9bb2d8240aa8e339 90 Pfam PF01527 Transposase 4 70 3.5E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS12465 38ee702e9417c08f9bb2d8240aa8e339 90 PANTHER PTHR33215 1 89 1.7E-23 T 16-09-2016 BER92_RS12465 38ee702e9417c08f9bb2d8240aa8e339 90 SUPERFAMILY SSF46689 1 89 1.33E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS12465 38ee702e9417c08f9bb2d8240aa8e339 90 PANTHER PTHR33215:SF1 1 89 1.7E-23 T 16-09-2016 BER92_RS12465 38ee702e9417c08f9bb2d8240aa8e339 90 Gene3D G3DSA:1.10.10.60 7 86 6.4E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09695 38ee702e9417c08f9bb2d8240aa8e339 90 Pfam PF01527 Transposase 4 70 3.5E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS09695 38ee702e9417c08f9bb2d8240aa8e339 90 PANTHER PTHR33215 1 89 1.7E-23 T 16-09-2016 BER92_RS09695 38ee702e9417c08f9bb2d8240aa8e339 90 SUPERFAMILY SSF46689 1 89 1.33E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09695 38ee702e9417c08f9bb2d8240aa8e339 90 PANTHER PTHR33215:SF1 1 89 1.7E-23 T 16-09-2016 BER92_RS09695 38ee702e9417c08f9bb2d8240aa8e339 90 Gene3D G3DSA:1.10.10.60 7 86 6.4E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS15225 38ee702e9417c08f9bb2d8240aa8e339 90 Pfam PF01527 Transposase 4 70 3.5E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS15225 38ee702e9417c08f9bb2d8240aa8e339 90 PANTHER PTHR33215 1 89 1.7E-23 T 16-09-2016 BER92_RS15225 38ee702e9417c08f9bb2d8240aa8e339 90 SUPERFAMILY SSF46689 1 89 1.33E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS15225 38ee702e9417c08f9bb2d8240aa8e339 90 PANTHER PTHR33215:SF1 1 89 1.7E-23 T 16-09-2016 BER92_RS15225 38ee702e9417c08f9bb2d8240aa8e339 90 Gene3D G3DSA:1.10.10.60 7 86 6.4E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03230 0f32b853608b00dc44569596e8e3e029 390 SUPERFAMILY SSF56935 202 387 4.71E-12 T 16-09-2016 BER92_RS03230 0f32b853608b00dc44569596e8e3e029 390 SUPERFAMILY SSF56935 78 151 4.71E-12 T 16-09-2016 BER92_RS03230 0f32b853608b00dc44569596e8e3e029 390 Gene3D G3DSA:2.40.160.10 17 390 2.3E-95 T 16-09-2016 IPR023614 Porin domain BER92_RS03230 0f32b853608b00dc44569596e8e3e029 390 Pfam PF07396 Phosphate-selective porin O and P 44 390 4.6E-96 T 16-09-2016 IPR010870 Phosphate-selective porin O/P BER92_RS16635 93e6a8c7f118ac1f0f056bcea6f0112a 536 PANTHER PTHR22855:SF35 1 536 0.0 T 16-09-2016 BER92_RS16635 93e6a8c7f118ac1f0f056bcea6f0112a 536 SUPERFAMILY SSF52096 277 536 4.79E-87 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS16635 93e6a8c7f118ac1f0f056bcea6f0112a 536 PANTHER PTHR22855 1 536 0.0 T 16-09-2016 BER92_RS16635 93e6a8c7f118ac1f0f056bcea6f0112a 536 SUPERFAMILY SSF52096 23 270 2.93E-70 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS16635 93e6a8c7f118ac1f0f056bcea6f0112a 536 Gene3D G3DSA:3.90.226.10 278 531 1.6E-93 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS16635 93e6a8c7f118ac1f0f056bcea6f0112a 536 Gene3D G3DSA:3.90.226.10 30 270 7.6E-78 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS16635 93e6a8c7f118ac1f0f056bcea6f0112a 536 Pfam PF01039 Carboxyl transferase domain 48 526 3.3E-148 T 16-09-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 SUPERFAMILY SSF52374 17 176 1.56E-26 T 16-09-2016 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 PANTHER PTHR22749:SF0 1 338 8.2E-123 T 16-09-2016 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 PIRSF PIRSF004491 7 312 1.4E-88 T 16-09-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 306 9.8E-75 T 16-09-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 SMART SM00904 184 307 6.6E-59 T 16-09-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 SUPERFAMILY SSF82114 176 307 8.5E-42 T 16-09-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 Pfam PF06574 FAD synthetase 15 168 1.3E-42 T 16-09-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 PANTHER PTHR22749 1 338 8.2E-123 T 16-09-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 Gene3D G3DSA:3.40.50.620 15 181 1.7E-51 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 Gene3D G3DSA:2.40.30.30 182 318 3.2E-38 T 16-09-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 BER92_RS14835 49dd6fafd4abe96401e40280aa501aa5 340 Pfam PF01687 Riboflavin kinase 185 306 1.8E-35 T 16-09-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 BER92_RS05445 4603548a57569567c454dd5a8d8de6d9 340 Gene3D G3DSA:3.30.70.270 169 322 3.6E-51 T 16-09-2016 BER92_RS05445 4603548a57569567c454dd5a8d8de6d9 340 PANTHER PTHR10799 79 320 3.6E-35 T 16-09-2016 BER92_RS05445 4603548a57569567c454dd5a8d8de6d9 340 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 168 322 3.2E-41 T 16-09-2016 IPR000160 GGDEF domain BER92_RS05445 4603548a57569567c454dd5a8d8de6d9 340 Pfam PF00990 Diguanylate cyclase, GGDEF domain 169 321 3.7E-45 T 16-09-2016 IPR000160 GGDEF domain BER92_RS05445 4603548a57569567c454dd5a8d8de6d9 340 SUPERFAMILY SSF55785 42 145 5.58E-8 T 16-09-2016 IPR000014 PAS domain BER92_RS05445 4603548a57569567c454dd5a8d8de6d9 340 Gene3D G3DSA:3.30.450.20 40 153 8.3E-7 T 16-09-2016 BER92_RS05445 4603548a57569567c454dd5a8d8de6d9 340 PANTHER PTHR10799:SF774 79 320 3.6E-35 T 16-09-2016 BER92_RS05445 4603548a57569567c454dd5a8d8de6d9 340 SUPERFAMILY SSF55073 173 321 1.1E-45 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS05445 4603548a57569567c454dd5a8d8de6d9 340 SMART SM00267 157 328 1.7E-59 T 16-09-2016 IPR000160 GGDEF domain BER92_RS14145 147c31fd8ebf0eb9a17c11f6e54c330c 234 SUPERFAMILY SSF81606 2 232 7.72E-62 T 16-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 BER92_RS14145 147c31fd8ebf0eb9a17c11f6e54c330c 234 PANTHER PTHR13832:SF278 1 232 1.8E-47 T 16-09-2016 BER92_RS14145 147c31fd8ebf0eb9a17c11f6e54c330c 234 Gene3D G3DSA:3.60.40.10 2 232 1.4E-62 T 16-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 BER92_RS14145 147c31fd8ebf0eb9a17c11f6e54c330c 234 Pfam PF13672 Protein phosphatase 2C 17 193 1.8E-13 T 16-09-2016 BER92_RS14145 147c31fd8ebf0eb9a17c11f6e54c330c 234 SMART SM00332 3 231 2.4E-18 T 16-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 BER92_RS14145 147c31fd8ebf0eb9a17c11f6e54c330c 234 SMART SM00331 8 233 7.4E-28 T 16-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 BER92_RS14145 147c31fd8ebf0eb9a17c11f6e54c330c 234 PANTHER PTHR13832 1 232 1.8E-47 T 16-09-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 BER92_RS04125 e9fcdf6e776c22c8f1c850dabc3017b1 505 Gene3D G3DSA:1.25.40.10 55 337 1.5E-4 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS04125 e9fcdf6e776c22c8f1c850dabc3017b1 505 Gene3D G3DSA:1.25.40.10 452 489 1.5E-4 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS04125 e9fcdf6e776c22c8f1c850dabc3017b1 505 SUPERFAMILY SSF48452 159 196 5.69E-6 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS04125 e9fcdf6e776c22c8f1c850dabc3017b1 505 SUPERFAMILY SSF48452 244 339 5.69E-6 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 Gene3D G3DSA:3.40.50.2300 85 207 4.6E-37 T 16-09-2016 BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 PANTHER PTHR30146 35 378 2.5E-114 T 16-09-2016 BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 SUPERFAMILY SSF47413 35 93 6.38E-14 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 SUPERFAMILY SSF53822 93 353 9.62E-61 T 16-09-2016 IPR028082 Periplasmic binding protein-like I BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 SMART SM00354 35 105 1.1E-18 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 Gene3D G3DSA:1.10.260.40 35 84 5.6E-17 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 PANTHER PTHR30146:SF30 35 378 2.5E-114 T 16-09-2016 BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 Gene3D G3DSA:3.40.50.2300 208 342 1.8E-40 T 16-09-2016 BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 Pfam PF13377 Periplasmic binding protein-like domain 204 362 2.3E-33 T 16-09-2016 BER92_RS08160 6bd3c0937e8b9f8c88a4df9d2c9f2f50 389 Pfam PF00356 Bacterial regulatory proteins, lacI family 37 82 9.5E-12 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 PANTHER PTHR36842 8 439 5.7E-92 T 16-09-2016 BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 Hamap MF_00671 Protein TolB [tolB]. 8 432 36.563 T 16-09-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 Gene3D G3DSA:2.130.10.10 156 434 1.3E-71 T 16-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 Gene3D G3DSA:3.40.50.10070 27 155 1.3E-45 T 16-09-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 SUPERFAMILY SSF52964 34 164 5.89E-35 T 16-09-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 SUPERFAMILY SSF69304 157 434 3.01E-53 T 16-09-2016 BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 Pfam PF07676 WD40-like Beta Propeller Repeat 284 320 1.2E-14 T 16-09-2016 IPR011659 WD40-like Beta Propeller BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 Pfam PF07676 WD40-like Beta Propeller Repeat 243 276 1.3E-8 T 16-09-2016 IPR011659 WD40-like Beta Propeller BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 Pfam PF07676 WD40-like Beta Propeller Repeat 209 231 7.7E-6 T 16-09-2016 IPR011659 WD40-like Beta Propeller BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 Pfam PF04052 TolB amino-terminal domain 27 131 2.0E-30 T 16-09-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 BER92_RS14435 5ff36bdc64346ca9871b1b7f458f8797 439 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 22 433 3.4E-159 T 16-09-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 BER92_RS17485 72d83de1ca62f8f12b918cc95ce3c19b 357 PANTHER PTHR21225:SF7 5 355 3.3E-252 T 16-09-2016 BER92_RS17485 72d83de1ca62f8f12b918cc95ce3c19b 357 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 8.9E-159 T 16-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS17485 72d83de1ca62f8f12b918cc95ce3c19b 357 PIRSF PIRSF001361 2 352 9.8E-157 T 16-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS17485 72d83de1ca62f8f12b918cc95ce3c19b 357 Gene3D G3DSA:3.20.20.70 9 352 7.3E-152 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS17485 72d83de1ca62f8f12b918cc95ce3c19b 357 SUPERFAMILY SSF51569 7 348 1.78E-134 T 16-09-2016 BER92_RS17485 72d83de1ca62f8f12b918cc95ce3c19b 357 PANTHER PTHR21225 5 355 3.3E-252 T 16-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS17485 72d83de1ca62f8f12b918cc95ce3c19b 357 Pfam PF00793 DAHP synthetase I family 40 338 3.5E-99 T 16-09-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 BER92_RS05235 cf2648b2aa8afdd7cdc9657dcffdf480 132 Gene3D G3DSA:3.30.1370.30 2 73 1.9E-24 T 16-09-2016 BER92_RS05235 cf2648b2aa8afdd7cdc9657dcffdf480 132 Gene3D G3DSA:3.30.1490.10 76 131 7.7E-27 T 16-09-2016 BER92_RS05235 cf2648b2aa8afdd7cdc9657dcffdf480 132 Pfam PF00410 Ribosomal protein S8 5 131 1.7E-45 T 16-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 BER92_RS05235 cf2648b2aa8afdd7cdc9657dcffdf480 132 PANTHER PTHR11758 1 132 3.7E-56 T 16-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 BER92_RS05235 cf2648b2aa8afdd7cdc9657dcffdf480 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 16-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 BER92_RS05235 cf2648b2aa8afdd7cdc9657dcffdf480 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 30.091 T 16-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 BER92_RS05235 cf2648b2aa8afdd7cdc9657dcffdf480 132 SUPERFAMILY SSF56047 2 131 1.03E-42 T 16-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Gene3D G3DSA:1.10.3060.10 645 828 3.0E-55 T 16-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 PRINTS PR00906 SecA protein signature 101 115 1.9E-71 T 16-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 PRINTS PR00906 SecA protein signature 409 422 1.9E-71 T 16-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 PRINTS PR00906 SecA protein signature 63 87 1.9E-71 T 16-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 PRINTS PR00906 SecA protein signature 372 389 1.9E-71 T 16-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 PRINTS PR00906 SecA protein signature 170 190 1.9E-71 T 16-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 PRINTS PR00906 SecA protein signature 117 127 1.9E-71 T 16-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 PRINTS PR00906 SecA protein signature 335 357 1.9E-71 T 16-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 SUPERFAMILY SSF52540 412 615 4.08E-58 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 ProSitePatterns PS01312 SecA family signature. 496 511 - T 16-09-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 815 0.0 T 16-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Pfam PF07517 SecA DEAD-like domain 7 398 1.6E-132 T 16-09-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Pfam PF07516 SecA Wing and Scaffold domain 615 826 3.5E-63 T 16-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 SUPERFAMILY SSF81767 227 364 9.42E-43 T 16-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Pfam PF01043 SecA preprotein cross-linking domain 233 354 4.7E-38 T 16-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 SUPERFAMILY SSF81886 888 900 2.22E-78 T 16-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 SUPERFAMILY SSF81886 618 837 2.22E-78 T 16-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Gene3D G3DSA:3.90.1440.10 230 364 4.0E-45 T 16-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Pfam PF02810 SEC-C motif 892 910 1.1E-10 T 16-09-2016 IPR004027 SEC-C motif BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 SUPERFAMILY SSF52540 364 411 1.02E-84 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 SUPERFAMILY SSF52540 6 228 1.02E-84 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 SMART SM00957 6 398 0.0 T 16-09-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 SMART SM00958 228 354 1.3E-75 T 16-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Gene3D G3DSA:3.40.50.300 413 616 1.8E-89 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 PANTHER PTHR30612 1 516 0.0 T 16-09-2016 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 PANTHER PTHR30612 547 912 0.0 T 16-09-2016 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 829 19.981 T 16-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Gene3D G3DSA:3.40.50.300 365 412 8.2E-128 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03820 5fe2e7a22d8a864d500f5e0b40917e6e 912 Gene3D G3DSA:3.40.50.300 2 228 8.2E-128 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07665 441d5ea4dc2a5eb4814129a41f695fd7 322 PANTHER PTHR35604 2 322 1.9E-241 T 16-09-2016 BER92_RS07665 441d5ea4dc2a5eb4814129a41f695fd7 322 Pfam PF01609 Transposase DDE domain 135 310 2.8E-32 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS07665 441d5ea4dc2a5eb4814129a41f695fd7 322 PANTHER PTHR35604:SF2 2 322 1.9E-241 T 16-09-2016 BER92_RS07665 441d5ea4dc2a5eb4814129a41f695fd7 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.4E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 SUPERFAMILY SSF55785 209 339 9.14E-13 T 16-09-2016 IPR000014 PAS domain BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 SMART SM00388 368 436 2.2E-9 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 Pfam PF00512 His Kinase A (phospho-acceptor) domain 370 434 6.1E-11 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 SMART SM00387 481 594 1.0E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 592 3.7E-19 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 228 345 5.1E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 PANTHER PTHR24423 208 592 6.5E-92 T 16-09-2016 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 PANTHER PTHR24423 11 24 6.5E-92 T 16-09-2016 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 PANTHER PTHR24423:SF383 11 24 6.5E-92 T 16-09-2016 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 Gene3D G3DSA:3.30.450.20 212 339 1.9E-11 T 16-09-2016 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 PANTHER PTHR24423:SF383 208 592 6.5E-92 T 16-09-2016 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 572 4.4E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 591 4.4E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 535 4.4E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 Gene3D G3DSA:3.30.565.10 435 598 1.3E-34 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 Pfam PF13188 PAS domain 225 266 5.1E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 Gene3D G3DSA:1.10.287.130 359 432 1.6E-13 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 SUPERFAMILY SSF55874 425 592 1.57E-34 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 SUPERFAMILY SSF47384 353 435 1.65E-17 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02885 c4c89e862821f36b67d7df4606588b1e 603 Pfam PF05227 CHASE3 domain 45 175 1.3E-14 T 16-09-2016 IPR007891 CHASE3 BER92_RS06490 3658b4ad65cd7d1d2b21e4993ea4baba 118 PANTHER PTHR30041:SF3 1 115 1.9E-35 T 16-09-2016 BER92_RS06490 3658b4ad65cd7d1d2b21e4993ea4baba 118 Pfam PF03960 ArsC family 5 113 1.2E-13 T 16-09-2016 IPR006660 Arsenate reductase-like BER92_RS06490 3658b4ad65cd7d1d2b21e4993ea4baba 118 SUPERFAMILY SSF52833 1 115 1.9E-28 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS06490 3658b4ad65cd7d1d2b21e4993ea4baba 118 PANTHER PTHR30041 1 115 1.9E-35 T 16-09-2016 BER92_RS06490 3658b4ad65cd7d1d2b21e4993ea4baba 118 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 113 1.1E-27 T 16-09-2016 IPR006504 Transcriptional regulator Spx/MgsR BER92_RS06490 3658b4ad65cd7d1d2b21e4993ea4baba 118 Gene3D G3DSA:3.40.30.10 2 115 3.1E-34 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 Gene3D G3DSA:1.10.150.240 21 83 5.1E-15 T 16-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 102 181 4.2E-8 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 PANTHER PTHR18901 3 215 3.0E-57 T 16-09-2016 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 Gene3D G3DSA:3.40.50.1000 84 214 1.8E-44 T 16-09-2016 IPR023214 HAD-like domain BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 Gene3D G3DSA:3.40.50.1000 3 20 1.8E-44 T 16-09-2016 IPR023214 HAD-like domain BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 PANTHER PTHR18901:SF14 3 215 3.0E-57 T 16-09-2016 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 64 185 3.3E-10 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 187 1.3E-37 T 16-09-2016 IPR023214 HAD-like domain BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 7 215 3.1E-62 T 16-09-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 3.7E-6 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 131 147 3.7E-6 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 100 113 3.7E-6 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 176 189 3.7E-6 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS15785 bb3c2d98cf385bac565d1a011033906e 216 SUPERFAMILY SSF56784 5 214 3.94E-56 T 16-09-2016 IPR023214 HAD-like domain BER92_RS18140 cbb922d8a89a0a21667ddc7013149a3f 252 Gene3D G3DSA:3.40.50.1000 97 242 6.0E-44 T 16-09-2016 IPR023214 HAD-like domain BER92_RS18140 cbb922d8a89a0a21667ddc7013149a3f 252 PANTHER PTHR12725:SF59 1 246 5.1E-122 T 16-09-2016 BER92_RS18140 cbb922d8a89a0a21667ddc7013149a3f 252 PANTHER PTHR12725 1 246 5.1E-122 T 16-09-2016 BER92_RS18140 cbb922d8a89a0a21667ddc7013149a3f 252 SUPERFAMILY SSF56784 12 220 6.89E-26 T 16-09-2016 IPR023214 HAD-like domain BER92_RS18140 cbb922d8a89a0a21667ddc7013149a3f 252 Pfam PF13419 Haloacid dehalogenase-like hydrolase 71 193 2.2E-7 T 16-09-2016 IPR023214 HAD-like domain BER92_RS18140 cbb922d8a89a0a21667ddc7013149a3f 252 Gene3D G3DSA:1.10.150.240 27 96 1.7E-30 T 16-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 PANTHER PTHR11451:SF29 291 579 4.8E-203 T 16-09-2016 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Gene3D G3DSA:1.10.1160.10 285 361 3.2E-35 T 16-09-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 52 - T 16-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 35 579 1.6E-198 T 16-09-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 277 360 1.7E-15 T 16-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 35 260 8.2E-76 T 16-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Gene3D G3DSA:2.40.240.10 372 486 7.1E-42 T 16-09-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 SUPERFAMILY SSF52374 19 361 5.63E-88 T 16-09-2016 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 PRINTS PR00987 Glutamyl-tRNA synthetase signature 67 80 8.0E-8 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 50 8.0E-8 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 PRINTS PR00987 Glutamyl-tRNA synthetase signature 216 226 8.0E-8 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Gene3D G3DSA:2.40.240.10 487 575 2.1E-30 T 16-09-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 PANTHER PTHR11451:SF29 7 253 4.8E-203 T 16-09-2016 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 PANTHER PTHR11451 7 253 4.8E-203 T 16-09-2016 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Gene3D G3DSA:3.40.50.620 35 103 1.5E-37 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Gene3D G3DSA:3.40.50.620 218 260 1.5E-37 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 577 51.978 T 16-09-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Gene3D G3DSA:3.90.800.10 107 215 1.4E-39 T 16-09-2016 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 364 556 3.2E-53 T 16-09-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: REACT_71 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 PANTHER PTHR11451 291 579 4.8E-203 T 16-09-2016 BER92_RS04835 13dda18fea8ee57279107d66a81688c5 579 SUPERFAMILY SSF50715 364 575 3.87E-67 T 16-09-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 BER92_RS03165 6d7a139143f80141e84a0964d1fc15e2 442 TIGRFAM TIGR00784 citMHS: citrate transporter 1 438 1.5E-191 T 16-09-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 BER92_RS03165 6d7a139143f80141e84a0964d1fc15e2 442 Pfam PF03600 Citrate transporter 13 386 5.7E-58 T 16-09-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 BER92_RS03165 6d7a139143f80141e84a0964d1fc15e2 442 PANTHER PTHR10283:SF87 9 438 1.8E-203 T 16-09-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 BER92_RS03165 6d7a139143f80141e84a0964d1fc15e2 442 PANTHER PTHR10283 9 438 1.8E-203 T 16-09-2016 BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 SUPERFAMILY SSF55658 1 57 7.85E-18 T 16-09-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 7.7E-41 T 16-09-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 Gene3D G3DSA:3.40.5.10 1 52 5.4E-24 T 16-09-2016 IPR020070 Ribosomal protein L9, N-terminal BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 7.6E-21 T 16-09-2016 IPR020070 Ribosomal protein L9, N-terminal BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 PANTHER PTHR21368 1 146 6.9E-47 T 16-09-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 23.219 T 16-09-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 Gene3D G3DSA:3.10.430.100 62 147 1.2E-21 T 16-09-2016 IPR020069 Ribosomal protein L9, C-terminal BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 SUPERFAMILY SSF55653 61 147 2.75E-20 T 16-09-2016 IPR020069 Ribosomal protein L9, C-terminal BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 16-09-2016 IPR020070 Ribosomal protein L9, N-terminal BER92_RS08455 b0adccf68cee2a7344e766eacc1fc184 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 1.4E-19 T 16-09-2016 IPR020069 Ribosomal protein L9, C-terminal BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 SUPERFAMILY SSF55486 71 350 6.41E-82 T 16-09-2016 BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 169 185 2.3E-28 T 16-09-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 190 201 2.3E-28 T 16-09-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 271 287 2.3E-28 T 16-09-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 133 153 2.3E-28 T 16-09-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 70 178 3.7E-31 T 16-09-2016 IPR013856 Peptidase M4 domain GO:0004222 BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 181 350 4.4E-50 T 16-09-2016 IPR001570 Peptidase M4, C-terminal GO:0004222 BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 Gene3D G3DSA:3.10.170.10 55 182 6.9E-47 T 16-09-2016 IPR013856 Peptidase M4 domain GO:0004222 BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 PANTHER PTHR33794 12 352 8.4E-128 T 16-09-2016 BER92_RS02020 9f3dc6c0d04ce9f758f1d0db7dd21aa8 352 Gene3D G3DSA:1.10.390.10 183 350 3.6E-50 T 16-09-2016 BER92_RS08755 d2a434aace31646dd237a1d0e20cd932 264 Gene3D G3DSA:3.90.550.10 4 230 2.0E-64 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS08755 d2a434aace31646dd237a1d0e20cd932 264 SUPERFAMILY SSF53448 5 227 9.69E-54 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS08755 d2a434aace31646dd237a1d0e20cd932 264 PANTHER PTHR32125 4 242 9.3E-76 T 16-09-2016 BER92_RS08755 d2a434aace31646dd237a1d0e20cd932 264 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 4 230 29.347 T 16-09-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS08755 d2a434aace31646dd237a1d0e20cd932 264 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 226 4.4E-72 T 16-09-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS08755 d2a434aace31646dd237a1d0e20cd932 264 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 103 110 - T 16-09-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS08755 d2a434aace31646dd237a1d0e20cd932 264 PANTHER PTHR32125:SF4 4 242 9.3E-76 T 16-09-2016 BER92_RS08755 d2a434aace31646dd237a1d0e20cd932 264 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 227 7.6E-63 T 16-09-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS11010 41405815e88a826450c1ec806aecda33 233 Pfam PF02678 Pirin 7 119 1.8E-32 T 16-09-2016 IPR003829 Pirin, N-terminal domain BER92_RS11010 41405815e88a826450c1ec806aecda33 233 PANTHER PTHR13903 1 233 1.8E-112 T 16-09-2016 IPR012093 Pirin BER92_RS11010 41405815e88a826450c1ec806aecda33 233 PANTHER PTHR13903:SF7 1 233 1.8E-112 T 16-09-2016 BER92_RS11010 41405815e88a826450c1ec806aecda33 233 PIRSF PIRSF006232 1 230 1.6E-52 T 16-09-2016 IPR012093 Pirin BER92_RS11010 41405815e88a826450c1ec806aecda33 233 SUPERFAMILY SSF51182 1 232 5.28E-73 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS11010 41405815e88a826450c1ec806aecda33 233 Gene3D G3DSA:2.60.120.10 4 231 7.5E-71 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS11510 43ccce27ff01f78994b21c2307a6067f 157 PANTHER PTHR30558 1 143 4.8E-80 T 16-09-2016 BER92_RS11510 43ccce27ff01f78994b21c2307a6067f 157 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 136 1.9E-30 T 16-09-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 BER92_RS11510 43ccce27ff01f78994b21c2307a6067f 157 PANTHER PTHR30558:SF5 1 143 4.8E-80 T 16-09-2016 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 SUPERFAMILY SSF52540 1 166 3.86E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 SUPERFAMILY SSF52540 139 440 1.21E-61 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 Hamap MF_00195 GTPase Der [der]. 2 437 36.542 T 16-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 PANTHER PTHR11649:SF5 1 435 1.6E-134 T 16-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 PANTHER PTHR11649 1 435 1.6E-134 T 16-09-2016 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 Gene3D G3DSA:3.30.300.20 357 435 2.5E-21 T 16-09-2016 IPR015946 K homology domain-like, alpha/beta BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 73 91 1.7E-8 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.7E-8 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 356 434 3.9E-23 T 16-09-2016 IPR032859 GTPase Der, C-terminal KH-domain-like BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 SMART SM00382 1 148 1.6 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 SMART SM00382 177 325 0.32 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 PIRSF PIRSF006485 1 442 1.9E-165 T 16-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 Pfam PF01926 50S ribosome-binding GTPase 180 298 1.4E-23 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 Pfam PF01926 50S ribosome-binding GTPase 5 120 1.3E-27 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 159 1.2E-25 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 179 344 3.4E-25 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 Gene3D G3DSA:3.40.50.300 178 356 7.9E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 Gene3D G3DSA:3.40.50.300 3 166 1.1E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10065 4fc14d5c26ba092384d02698e02b9807 465 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 434 4.1E-164 T 16-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 248 2.5E-53 T 16-09-2016 BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 7.6E-8 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 7.6E-8 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 7.6E-8 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 Gene3D G3DSA:3.40.50.720 10 249 8.3E-70 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PANTHER PTHR24322 153 188 3.0E-62 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PANTHER PTHR24322:SF559 153 188 3.0E-62 T 16-09-2016 BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PANTHER PTHR24322:SF559 13 137 3.0E-62 T 16-09-2016 BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 SUPERFAMILY SSF51735 10 249 1.0E-68 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 8.5E-29 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 8.5E-29 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 8.5E-29 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 8.5E-29 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 8.5E-29 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 8.5E-29 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00465 579c3673c4d77a20483cfb720f921ef9 258 PANTHER PTHR24322 13 137 3.0E-62 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17405 576edf76a2ac59291fc03c4f54cf505a 236 SUPERFAMILY SSF52096 18 212 1.39E-18 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS17405 576edf76a2ac59291fc03c4f54cf505a 236 TIGRFAM TIGR03134 malonate_gamma: biotin-independent malonate decarboxylase, gamma subunit 3 232 8.6E-79 T 16-09-2016 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit GO:0044262 MetaCyc: PWY-6060 BER92_RS17405 576edf76a2ac59291fc03c4f54cf505a 236 Pfam PF06833 Malonate decarboxylase gamma subunit (MdcE) 6 231 7.4E-88 T 16-09-2016 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal GO:0016874 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS17405 576edf76a2ac59291fc03c4f54cf505a 236 Gene3D G3DSA:3.90.226.10 19 204 2.6E-16 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS18475 05783b12e4501b775a26b0d6eef1b425 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS18475 05783b12e4501b775a26b0d6eef1b425 455 Pfam PF01609 Transposase DDE domain 284 421 4.5E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS18475 05783b12e4501b775a26b0d6eef1b425 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS18475 05783b12e4501b775a26b0d6eef1b425 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS02600 9d6e15d1f4429155d25daaee3cdf2ed0 222 Pfam PF02230 Phospholipase/Carboxylesterase 13 216 3.4E-45 T 16-09-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 BER92_RS02600 9d6e15d1f4429155d25daaee3cdf2ed0 222 SUPERFAMILY SSF53474 9 218 2.19E-50 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02600 9d6e15d1f4429155d25daaee3cdf2ed0 222 PANTHER PTHR10655:SF17 1 216 2.9E-74 T 16-09-2016 BER92_RS02600 9d6e15d1f4429155d25daaee3cdf2ed0 222 PANTHER PTHR10655 1 216 2.9E-74 T 16-09-2016 BER92_RS02600 9d6e15d1f4429155d25daaee3cdf2ed0 222 Gene3D G3DSA:3.40.50.1820 11 218 1.9E-65 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS14960 a36292cb1347d2ca50b886feffbc70a1 156 Pfam PF01609 Transposase DDE domain 1 152 3.4E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14960 a36292cb1347d2ca50b886feffbc70a1 156 PANTHER PTHR30007:SF0 1 155 8.8E-29 T 16-09-2016 BER92_RS14960 a36292cb1347d2ca50b886feffbc70a1 156 PANTHER PTHR30007 1 155 8.8E-29 T 16-09-2016 BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 Pfam PF16193 AAA C-terminal domain 196 273 4.9E-22 T 16-09-2016 IPR032423 AAA ATPase, C-terminal domain BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 Gene3D G3DSA:3.40.50.300 22 161 3.5E-32 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 Pfam PF12002 MgsA AAA+ ATPase C terminal 275 440 1.5E-61 T 16-09-2016 IPR021886 MgsA AAA+ ATPase C-terminal BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 PANTHER PTHR13779:SF7 23 458 2.0E-189 T 16-09-2016 BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 62 170 2.4E-14 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 Gene3D G3DSA:1.20.272.10 255 353 1.1E-41 T 16-09-2016 BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 PANTHER PTHR13779 23 458 2.0E-189 T 16-09-2016 BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 SUPERFAMILY SSF48019 258 440 2.42E-68 T 16-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 SMART SM00382 58 174 4.4E-14 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 Gene3D G3DSA:1.10.3710.10 355 451 4.5E-30 T 16-09-2016 BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 Gene3D G3DSA:1.10.8.60 162 247 5.2E-15 T 16-09-2016 BER92_RS10125 475d506636d2c3babf755b557d06e1c4 458 SUPERFAMILY SSF52540 20 241 7.25E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 SMART SM00388 122 189 4.9E-12 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 Pfam PF00512 His Kinase A (phospho-acceptor) domain 123 182 1.2E-12 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 Gene3D G3DSA:3.30.450.20 10 96 5.3E-9 T 16-09-2016 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 273 287 4.6E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 338 4.6E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 302 320 4.6E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 PANTHER PTHR24423 10 338 5.3E-60 T 16-09-2016 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 228 339 2.5E-16 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 SUPERFAMILY SSF55874 192 338 4.71E-29 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 SUPERFAMILY SSF55785 10 71 9.5E-8 T 16-09-2016 IPR000014 PAS domain BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 Gene3D G3DSA:3.30.565.10 191 338 7.8E-30 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 SMART SM00387 228 341 4.6E-27 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 Gene3D G3DSA:1.10.287.130 123 181 1.1E-12 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 SUPERFAMILY SSF47384 119 182 3.92E-11 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 Pfam PF08448 PAS fold 10 52 4.3E-5 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS18605 2fb49b7082365b29d9889c1fcdd272e1 351 PANTHER PTHR24423:SF488 10 338 5.3E-60 T 16-09-2016 BER92_RS15285 6db4e2ca74c4cabba0830ae16e7f2c5e 131 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 48 95 2.3E-10 T 16-09-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BER92_RS15285 6db4e2ca74c4cabba0830ae16e7f2c5e 131 Pfam PF02627 Carboxymuconolactone decarboxylase family 32 112 3.2E-17 T 16-09-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BER92_RS15285 6db4e2ca74c4cabba0830ae16e7f2c5e 131 PANTHER PTHR33930 9 126 3.8E-78 T 16-09-2016 BER92_RS15285 6db4e2ca74c4cabba0830ae16e7f2c5e 131 PANTHER PTHR33930:SF1 9 126 3.8E-78 T 16-09-2016 BER92_RS15285 6db4e2ca74c4cabba0830ae16e7f2c5e 131 SUPERFAMILY SSF69118 8 112 4.84E-24 T 16-09-2016 IPR029032 AhpD-like BER92_RS15285 6db4e2ca74c4cabba0830ae16e7f2c5e 131 Gene3D G3DSA:1.20.1290.10 8 121 2.4E-30 T 16-09-2016 IPR029032 AhpD-like BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Gene3D G3DSA:3.30.450.20 27 138 2.9E-9 T 16-09-2016 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SUPERFAMILY SSF55874 348 520 1.7E-47 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 148 271 1.8E-16 T 16-09-2016 IPR000014 PAS domain BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SMART SM00388 293 359 4.5E-15 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Pfam PF13188 PAS domain 28 82 0.055 T 16-09-2016 IPR000014 PAS domain BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SUPERFAMILY SSF55785 137 264 1.69E-28 T 16-09-2016 IPR000014 PAS domain BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SMART SM00448 547 665 9.0E-29 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Pfam PF00512 His Kinase A (phospho-acceptor) domain 294 356 3.0E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SMART SM00387 405 518 4.5E-42 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 405 517 5.8E-28 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Gene3D G3DSA:3.30.565.10 360 520 1.3E-45 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 PANTHER PTHR24423:SF522 40 666 4.2E-244 T 16-09-2016 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SMART SM00091 152 218 1.9E-8 T 16-09-2016 IPR000014 PAS domain BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Gene3D G3DSA:3.30.450.20 139 264 5.9E-28 T 16-09-2016 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Gene3D G3DSA:1.10.287.130 286 354 6.6E-15 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Gene3D G3DSA:3.40.50.2300 545 669 2.1E-31 T 16-09-2016 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 PANTHER PTHR24423 40 666 4.2E-244 T 16-09-2016 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Pfam PF08448 PAS fold 159 268 3.6E-14 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SUPERFAMILY SSF52172 545 670 1.37E-32 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SUPERFAMILY SSF55785 53 148 1.75E-9 T 16-09-2016 IPR000014 PAS domain BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 456 1.5E-16 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 515 1.5E-16 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 495 1.5E-16 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 470 1.5E-16 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 Pfam PF00072 Response regulator receiver domain 550 666 9.0E-22 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SUPERFAMILY SSF47384 279 356 3.53E-16 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS16055 7d49005a754629d4810842588e9a8ea2 673 SMART SM00086 224 266 3.5E-6 T 16-09-2016 IPR001610 PAC motif BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 Gene3D G3DSA:3.20.20.80 244 609 2.4E-90 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 SMART SM00642 250 603 9.9E-7 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 PANTHER PTHR10357:SF160 51 725 0.0 T 16-09-2016 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 PANTHER PTHR10357 51 725 0.0 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 627 725 7.0E-23 T 16-09-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 Gene3D G3DSA:2.60.40.1180 622 725 3.7E-35 T 16-09-2016 IPR013780 Glycosyl hydrolase, all-beta BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 Gene3D G3DSA:2.60.40.10 111 220 3.5E-36 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 Gene3D G3DSA:2.60.40.10 16 103 8.9E-14 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 SUPERFAMILY SSF51011 622 725 3.6E-32 T 16-09-2016 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 123 206 1.2E-22 T 16-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 99 726 44.083 T 16-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 PIRSF PIRSF000463 10 727 4.5E-283 T 16-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 Pfam PF00128 Alpha amylase, catalytic domain 265 346 1.8E-7 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 SUPERFAMILY SSF81296 18 111 7.0E-16 T 16-09-2016 IPR014756 Immunoglobulin E-set BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 107 723 6.1E-272 T 16-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 BER92_RS18805 46a7b0d715afe2852cb5ac7890753396 727 SUPERFAMILY SSF51445 168 615 3.07E-112 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 PIRSF PIRSF001500 46 407 3.3E-139 T 16-09-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 Pfam PF01842 ACT domain 326 391 1.0E-12 T 16-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 Pfam PF01817 Chorismate mutase type II 57 136 5.1E-21 T 16-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 PANTHER PTHR21022 53 405 5.3E-139 T 16-09-2016 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 SMART SM00830 57 138 5.8E-28 T 16-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 SUPERFAMILY SSF53850 139 323 3.53E-54 T 16-09-2016 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 SUPERFAMILY SSF55021 310 405 2.47E-28 T 16-09-2016 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 Pfam PF00800 Prephenate dehydratase 140 316 5.9E-59 T 16-09-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 PANTHER PTHR21022:SF0 53 405 5.3E-139 T 16-09-2016 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 SUPERFAMILY SSF48600 53 141 8.24E-20 T 16-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 TIGRFAM TIGR01807 CM_P2: chorismate mutase 53 128 7.3E-23 T 16-09-2016 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626|UniPathway: UPA00120|UniPathway: UPA00121 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 Gene3D G3DSA:3.40.190.10 136 224 2.4E-30 T 16-09-2016 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 Gene3D G3DSA:1.20.59.10 42 135 7.1E-22 T 16-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 Gene3D G3DSA:3.30.70.260 321 405 1.9E-30 T 16-09-2016 BER92_RS12530 ff6a0567e1b6104fccd2dd6878dfd46d 408 Gene3D G3DSA:3.40.190.10 225 303 1.0E-21 T 16-09-2016 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 PANTHER PTHR10890 1 471 3.5E-214 T 16-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 SUPERFAMILY SSF52374 4 315 7.17E-89 T 16-09-2016 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 3.2E-28 T 16-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 3.2E-28 T 16-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 3.2E-28 T 16-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 3.2E-28 T 16-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 470 3.1E-143 T 16-09-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 Gene3D G3DSA:3.40.50.620 24 306 1.6E-95 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 Pfam PF09190 DALR domain 340 398 7.5E-11 T 16-09-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 471 36.475 T 16-09-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 Gene3D G3DSA:1.20.120.640 309 378 5.4E-14 T 16-09-2016 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 SUPERFAMILY SSF47323 317 470 2.09E-28 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 SMART SM00840 339 398 1.6E-13 T 16-09-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 BER92_RS11900 e343b8465bdc057669a43c011e543de5 471 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 18 315 5.7E-112 T 16-09-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 PIRSF PIRSF000904 1 336 1.3E-122 T 16-09-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 Gene3D G3DSA:3.40.190.80 195 330 6.6E-57 T 16-09-2016 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 SUPERFAMILY SSF56655 4 330 1.23E-111 T 16-09-2016 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 PIRSF PIRSF500210 1 335 1.2E-123 T 16-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 192 2.2E-59 T 16-09-2016 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 Gene3D G3DSA:3.30.540.10 5 194 2.5E-71 T 16-09-2016 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 PANTHER PTHR11556 6 337 3.9E-161 T 16-09-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 147 170 2.8E-68 T 16-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 65 91 2.8E-68 T 16-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 204 231 2.8E-68 T 16-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 306 331 2.8E-68 T 16-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 28 55 2.8E-68 T 16-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 178 201 2.8E-68 T 16-09-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS01980 b0701c58074435f0326ba2bffba445e6 351 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 332 45.495 T 16-09-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 367 1.7E-28 T 16-09-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 SUPERFAMILY SSF53738 4 167 1.81E-46 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 5.6E-12 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 5.6E-12 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 97 111 5.6E-12 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 PANTHER PTHR22573:SF15 1 449 6.7E-156 T 16-09-2016 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 PANTHER PTHR22573 1 449 6.7E-156 T 16-09-2016 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 137 1.1E-42 T 16-09-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 448 44.393 T 16-09-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 446 1.8E-190 T 16-09-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 Gene3D G3DSA:3.30.310.50 371 447 3.5E-12 T 16-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 Gene3D G3DSA:3.40.120.10 253 369 3.5E-30 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 443 2.3E-10 T 16-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 SUPERFAMILY SSF53738 158 258 1.22E-27 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 98 107 - T 16-09-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 Gene3D G3DSA:3.40.120.10 178 251 9.0E-25 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 SUPERFAMILY SSF55957 360 448 8.02E-15 T 16-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 256 3.7E-18 T 16-09-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 Gene3D G3DSA:3.40.120.10 4 153 5.4E-47 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS07190 62d48e3910e259aecec724efb2623685 449 SUPERFAMILY SSF53738 260 367 1.26E-27 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SUPERFAMILY SSF55874 864 1038 3.8E-44 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SUPERFAMILY SSF63829 178 321 7.52E-5 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SUPERFAMILY SSF63829 357 381 7.52E-5 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Gene3D G3DSA:3.40.50.2300 1059 1184 5.9E-29 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PANTHER PTHR24423 788 1178 1.1E-226 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1022 1035 1.3E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PRINTS PR00344 Bacterial sensor protein C-terminal signature 998 1016 1.3E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PRINTS PR00344 Bacterial sensor protein C-terminal signature 980 990 1.3E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PRINTS PR00344 Bacterial sensor protein C-terminal signature 962 976 1.3E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SUPERFAMILY SSF52172 1061 1177 6.4E-29 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SMART SM00387 922 1038 9.7E-33 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Pfam PF00512 His Kinase A (phospho-acceptor) domain 810 875 1.4E-15 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SUPERFAMILY SSF47384 798 876 1.86E-17 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Gene3D G3DSA:2.120.10.30 46 150 2.1E-4 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Gene3D G3DSA:2.120.10.30 404 599 6.4E-6 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Pfam PF00072 Response regulator receiver domain 1064 1172 5.3E-20 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PANTHER PTHR24423:SF548 788 1178 1.1E-226 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PANTHER PTHR24423:SF548 40 96 1.1E-226 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PANTHER PTHR24423:SF548 233 270 1.1E-226 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 922 1036 7.5E-25 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Gene3D G3DSA:3.30.565.10 876 1037 1.4E-46 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SUPERFAMILY SSF63829 405 608 6.41E-12 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Pfam PF07494 Two component regulator propeller 35 57 0.0065 T 16-09-2016 IPR011110 Two component regulator propeller BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SMART SM00448 1061 1172 3.8E-24 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Gene3D G3DSA:1.10.287.130 805 871 6.7E-13 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Gene3D G3DSA:2.120.10.30 365 377 9.1E-5 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Gene3D G3DSA:2.120.10.30 256 287 9.1E-5 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Gene3D G3DSA:2.120.10.30 151 215 9.1E-5 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PANTHER PTHR24423 40 96 1.1E-226 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 PANTHER PTHR24423 233 270 1.1E-226 T 16-09-2016 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 Pfam PF07495 Y_Y_Y domain 693 755 8.1E-9 T 16-09-2016 IPR011123 Two component regulator three Y BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SMART SM00388 810 875 8.0E-21 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS05880 d14195f4e5638f16a8679d61b9ed26c6 1189 SUPERFAMILY SSF63829 37 232 2.75E-9 T 16-09-2016 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 Gene3D G3DSA:2.30.22.10 114 170 7.0E-24 T 16-09-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 PRINTS PR00773 GrpE protein signature 42 58 6.1E-24 T 16-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 PRINTS PR00773 GrpE protein signature 70 85 6.1E-24 T 16-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 PRINTS PR00773 GrpE protein signature 149 168 6.1E-24 T 16-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 PRINTS PR00773 GrpE protein signature 122 137 6.1E-24 T 16-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 Gene3D G3DSA:3.90.20.20 18 109 5.4E-25 T 16-09-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 Hamap MF_01151 Protein GrpE [grpE]. 3 170 19.329 T 16-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 SUPERFAMILY SSF58014 20 114 1.44E-21 T 16-09-2016 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 PANTHER PTHR21237 19 172 1.1E-52 T 16-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 ProSitePatterns PS01071 grpE protein signature. 125 168 - T 16-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 SUPERFAMILY SSF51064 116 171 5.36E-18 T 16-09-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 BER92_RS07965 8a8458c1ae3f4ba29d23a4cfd9fd7c7e 172 Pfam PF01025 GrpE 12 169 1.3E-46 T 16-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 BER92_RS14685 226d969535f5ee6be30eb6d1c8a0d321 375 PIRSF PIRSF001455 21 372 8.7E-102 T 16-09-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS14685 226d969535f5ee6be30eb6d1c8a0d321 375 Pfam PF01761 3-dehydroquinate synthase 74 337 3.8E-101 T 16-09-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS14685 226d969535f5ee6be30eb6d1c8a0d321 375 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 8 370 39.255 T 16-09-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS14685 226d969535f5ee6be30eb6d1c8a0d321 375 Gene3D G3DSA:3.40.50.1970 15 179 5.7E-59 T 16-09-2016 BER92_RS14685 226d969535f5ee6be30eb6d1c8a0d321 375 Gene3D G3DSA:1.20.1090.10 180 368 3.2E-61 T 16-09-2016 BER92_RS14685 226d969535f5ee6be30eb6d1c8a0d321 375 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 18 366 1.4E-107 T 16-09-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS14685 226d969535f5ee6be30eb6d1c8a0d321 375 SUPERFAMILY SSF56796 15 368 2.88E-102 T 16-09-2016 BER92_RS14685 226d969535f5ee6be30eb6d1c8a0d321 375 PANTHER PTHR21090 3 369 3.1E-169 T 16-09-2016 BER92_RS07595 fb9d0070fa0c12f540b47ce764f263f7 80 PANTHER PTHR33803:SF1 17 80 4.6E-20 T 16-09-2016 BER92_RS07595 fb9d0070fa0c12f540b47ce764f263f7 80 PANTHER PTHR33803 17 80 4.6E-20 T 16-09-2016 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 Gene3D G3DSA:2.60.40.420 481 601 3.5E-38 T 16-09-2016 IPR008972 Cupredoxin BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 ProSitePatterns PS00080 Multicopper oxidases signature 2. 583 594 - T 16-09-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 SUPERFAMILY SSF49503 452 600 1.64E-36 T 16-09-2016 IPR008972 Cupredoxin BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 PANTHER PTHR11709:SF33 430 601 2.0E-120 T 16-09-2016 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 PANTHER PTHR11709:SF33 58 217 2.0E-120 T 16-09-2016 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 PANTHER PTHR11709:SF33 258 371 2.0E-120 T 16-09-2016 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 ProSitePatterns PS00079 Multicopper oxidases signature 1. 148 168 - T 16-09-2016 IPR033138 Multicopper oxidases, conserved site BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 Pfam PF07732 Multicopper oxidase 62 172 1.4E-39 T 16-09-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 PANTHER PTHR11709 430 601 2.0E-120 T 16-09-2016 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 PANTHER PTHR11709 58 217 2.0E-120 T 16-09-2016 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 PANTHER PTHR11709 258 371 2.0E-120 T 16-09-2016 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 43 3.0E-5 T 16-09-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 Gene3D G3DSA:2.60.40.420 178 382 2.8E-48 T 16-09-2016 IPR008972 Cupredoxin BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 SUPERFAMILY SSF49503 65 204 2.62E-38 T 16-09-2016 IPR008972 Cupredoxin BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 ProSitePatterns PS00079 Multicopper oxidases signature 1. 578 598 - T 16-09-2016 IPR033138 Multicopper oxidases, conserved site BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 Pfam PF07731 Multicopper oxidase 488 601 2.7E-26 T 16-09-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 13 601 8.4E-302 T 16-09-2016 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 Gene3D G3DSA:2.60.40.420 58 171 1.0E-30 T 16-09-2016 IPR008972 Cupredoxin BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 Pfam PF00394 Multicopper oxidase 183 360 2.0E-30 T 16-09-2016 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 BER92_RS15830 d6d004e34bee5d3ff45797fac5a77607 602 SUPERFAMILY SSF49503 177 383 7.59E-54 T 16-09-2016 IPR008972 Cupredoxin BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 Pfam PF00106 short chain dehydrogenase 5 195 1.6E-59 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.6E-44 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.6E-44 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.6E-44 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.6E-44 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.6E-44 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.6E-44 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 244 2.9E-122 T 16-09-2016 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|UniPathway: UPA00917 BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 Gene3D G3DSA:3.40.50.720 2 244 1.4E-85 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.5E-12 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.5E-12 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.5E-12 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 183 1.3E-4 T 16-09-2016 BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PANTHER PTHR24322:SF328 8 136 4.0E-58 T 16-09-2016 BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PANTHER PTHR24322:SF328 152 184 4.0E-58 T 16-09-2016 BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 SUPERFAMILY SSF51735 4 244 2.6E-82 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PANTHER PTHR24322 8 136 4.0E-58 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS12090 55edf9af50559fd5557e47cbc8f09973 246 PANTHER PTHR24322 152 184 4.0E-58 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS16825 92f5f10278fd6df3c519aa961b36fb77 390 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 200 219 - T 16-09-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BER92_RS16825 92f5f10278fd6df3c519aa961b36fb77 390 PANTHER PTHR11601 7 388 2.5E-115 T 16-09-2016 BER92_RS16825 92f5f10278fd6df3c519aa961b36fb77 390 PIRSF PIRSF005572 6 388 3.8E-103 T 16-09-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 BER92_RS16825 92f5f10278fd6df3c519aa961b36fb77 390 Gene3D G3DSA:3.90.1150.10 258 377 5.8E-33 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS16825 92f5f10278fd6df3c519aa961b36fb77 390 Gene3D G3DSA:3.40.640.10 21 257 5.3E-76 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS16825 92f5f10278fd6df3c519aa961b36fb77 390 Pfam PF00266 Aminotransferase class-V 10 371 6.0E-69 T 16-09-2016 IPR000192 Aminotransferase class V domain BER92_RS16825 92f5f10278fd6df3c519aa961b36fb77 390 SUPERFAMILY SSF53383 8 377 4.39E-88 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 PANTHER PTHR23083 44 279 6.0E-24 T 16-09-2016 BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 SUPERFAMILY SSF81901 44 252 9.15E-18 T 16-09-2016 BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 SMART SM00028 40 73 56.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 SMART SM00028 112 145 45.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 SMART SM00028 185 218 160.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 SMART SM00028 219 252 130.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 Pfam PF13432 Tetratricopeptide repeat 116 167 0.0023 T 16-09-2016 BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 Pfam PF13432 Tetratricopeptide repeat 190 251 0.011 T 16-09-2016 BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 Gene3D G3DSA:1.25.40.10 45 291 8.1E-26 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS09025 414394f6c5e6240ac6c4e028e199727a 392 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 9 390 35.043 T 16-09-2016 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 BER92_RS07995 f8c93c23d300de5c0da1e5258df4d074 467 Gene3D G3DSA:1.20.1600.10 21 457 5.3E-28 T 16-09-2016 BER92_RS07995 f8c93c23d300de5c0da1e5258df4d074 467 PANTHER PTHR30203:SF12 1 457 1.9E-253 T 16-09-2016 BER92_RS07995 f8c93c23d300de5c0da1e5258df4d074 467 PANTHER PTHR30203 1 457 1.9E-253 T 16-09-2016 BER92_RS07995 f8c93c23d300de5c0da1e5258df4d074 467 Pfam PF02321 Outer membrane efflux protein 98 246 2.3E-7 T 16-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 BER92_RS07995 f8c93c23d300de5c0da1e5258df4d074 467 Pfam PF02321 Outer membrane efflux protein 283 457 1.0E-21 T 16-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 BER92_RS07995 f8c93c23d300de5c0da1e5258df4d074 467 SUPERFAMILY SSF56954 2 96 1.96E-42 T 16-09-2016 BER92_RS07995 f8c93c23d300de5c0da1e5258df4d074 467 SUPERFAMILY SSF56954 141 457 1.96E-42 T 16-09-2016 BER92_RS09880 eafe76c271f39e63e10601d044793044 262 Pfam PF09850 Type VI secretion system protein DotU 33 231 4.6E-56 T 16-09-2016 IPR017732 Type IV / VI secretion system, DotU BER92_RS09880 eafe76c271f39e63e10601d044793044 262 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 32 238 2.5E-61 T 16-09-2016 IPR017732 Type IV / VI secretion system, DotU BER92_RS09880 eafe76c271f39e63e10601d044793044 262 PANTHER PTHR38033:SF1 33 252 8.6E-22 T 16-09-2016 BER92_RS09880 eafe76c271f39e63e10601d044793044 262 PANTHER PTHR38033 33 252 8.6E-22 T 16-09-2016 BER92_RS01740 84756b5340b49e68ce633243c6f4307a 273 PANTHER PTHR10859 1 249 1.2E-83 T 16-09-2016 BER92_RS01740 84756b5340b49e68ce633243c6f4307a 273 Pfam PF00535 Glycosyl transferase family 2 13 130 3.5E-19 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS01740 84756b5340b49e68ce633243c6f4307a 273 Gene3D G3DSA:3.90.550.10 13 131 2.4E-15 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS01740 84756b5340b49e68ce633243c6f4307a 273 PANTHER PTHR10859:SF84 1 249 1.2E-83 T 16-09-2016 BER92_RS01740 84756b5340b49e68ce633243c6f4307a 273 SUPERFAMILY SSF53448 11 226 2.08E-32 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS02050 b9d83c426a086c33279541508a40505a 431 PANTHER PTHR18919:SF5 7 431 3.2E-180 T 16-09-2016 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 PANTHER PTHR18919 7 431 3.2E-180 T 16-09-2016 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 Gene3D G3DSA:3.40.47.10 296 430 1.1E-46 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 Gene3D G3DSA:3.40.47.10 172 218 1.1E-46 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 PIRSF PIRSF000429 6 431 4.3E-105 T 16-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 Gene3D G3DSA:3.40.47.10 219 294 9.0E-47 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 Gene3D G3DSA:3.40.47.10 12 131 9.0E-47 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 SUPERFAMILY SSF53901 288 431 9.51E-31 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 Pfam PF00108 Thiolase, N-terminal domain 12 281 6.0E-55 T 16-09-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 14 430 1.9E-115 T 16-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 SUPERFAMILY SSF53901 12 288 7.61E-56 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS02050 b9d83c426a086c33279541508a40505a 431 Pfam PF02803 Thiolase, C-terminal domain 290 431 6.6E-32 T 16-09-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 SUPERFAMILY SSF53613 223 488 5.3E-70 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 PIRSF PIRSF017184 5 492 1.5E-124 T 16-09-2016 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 PANTHER PTHR12592:SF0 1 494 8.7E-132 T 16-09-2016 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 229 488 1.1E-70 T 16-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 SUPERFAMILY SSF64153 7 245 8.89E-56 T 16-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 13 209 3.4E-37 T 16-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 Pfam PF01256 Carbohydrate kinase 247 485 1.6E-59 T 16-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 Gene3D G3DSA:3.40.1190.20 231 488 1.9E-81 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 PANTHER PTHR12592 1 494 8.7E-132 T 16-09-2016 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 9 209 22.922 T 16-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 Pfam PF03853 YjeF-related protein N-terminus 31 186 1.8E-38 T 16-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 ProSitePatterns PS01049 YjeF C-terminal domain signature 1. 314 324 - T 16-09-2016 IPR017953 Carbohydrate kinase, predicted, conserved site BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 224 494 21.937 T 16-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 BER92_RS12125 dcbe5bcb573d419e5f47c391d5af5741 495 Gene3D G3DSA:3.40.50.10260 6 230 2.4E-57 T 16-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 Gene3D G3DSA:3.40.50.720 182 293 8.3E-26 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 144 2.4E-26 T 16-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 PANTHER PTHR11695:SF261 16 352 4.0E-168 T 16-09-2016 BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 179 207 - T 16-09-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 PANTHER PTHR11695 16 352 4.0E-168 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 16-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 Pfam PF00107 Zinc-binding dehydrogenase 186 309 3.9E-26 T 16-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 SMART SM00829 12 343 1.1E-5 T 16-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 Gene3D G3DSA:3.90.180.10 3 181 1.9E-61 T 16-09-2016 IPR011032 GroES-like BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 SUPERFAMILY SSF50129 13 172 3.5E-47 T 16-09-2016 IPR011032 GroES-like BER92_RS18900 20b5b331baccbc6f0d064c24b16de943 352 SUPERFAMILY SSF51735 151 313 2.02E-43 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 494 512 1.5E-37 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 598 612 1.5E-37 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 536 554 1.5E-37 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 565 583 1.5E-37 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 521 539 - T 16-09-2016 IPR028299 ClpA/B, conserved site 2 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 Gene3D G3DSA:1.10.1780.10 1 141 3.8E-40 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 Gene3D G3DSA:1.10.8.60 356 439 6.8E-30 T 16-09-2016 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 Pfam PF07724 AAA domain (Cdc48 subfamily) 489 650 8.0E-46 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.6E-12 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 305 317 - T 16-09-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 PANTHER PTHR11638 1 760 0.0 T 16-09-2016 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 SMART SM00382 490 626 2.7E-9 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 SMART SM00382 209 354 2.8E-9 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 SUPERFAMILY SSF81923 1 141 3.53E-56 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 657 736 3.4E-22 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 Gene3D G3DSA:3.40.50.300 173 352 4.8E-43 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 737 0.0 T 16-09-2016 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 PANTHER PTHR11638:SF111 1 760 0.0 T 16-09-2016 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 214 315 8.1E-11 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 SUPERFAMILY SSF52540 440 745 3.78E-74 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 SMART SM01086 656 745 1.4E-32 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 SUPERFAMILY SSF52540 170 436 3.01E-67 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 Gene3D G3DSA:3.40.50.300 446 667 5.3E-52 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10165 a5daa1ee6bc3833201e70dc4e45eac8f 760 Gene3D G3DSA:1.10.8.60 668 750 3.3E-29 T 16-09-2016 BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 3 409 7.4E-197 T 16-09-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 PANTHER PTHR11712 3 410 1.5E-209 T 16-09-2016 BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 SUPERFAMILY SSF53901 3 251 1.35E-76 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 SMART SM00825 Beta-ketoacyl synthase 5 411 3.3E-15 T 16-09-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 16-09-2016 IPR018201 Beta-ketoacyl synthase, active site BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 Gene3D G3DSA:3.40.47.10 7 259 4.2E-75 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 SUPERFAMILY SSF53901 213 410 9.01E-73 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 368 3.5E-38 T 16-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 Gene3D G3DSA:3.40.47.10 262 410 3.2E-63 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 246 3.9E-58 T 16-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal BER92_RS13995 532fa221827a5f35a0d29cf58b896389 411 PIRSF PIRSF000447 1 411 3.2E-183 T 16-09-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 BER92_RS05190 35e9963a5d84015a8685389d48c3db64 113 ProSitePatterns PS00464 Ribosomal protein L22 signature. 85 109 - T 16-09-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05190 35e9963a5d84015a8685389d48c3db64 113 SUPERFAMILY SSF54843 2 110 1.57E-41 T 16-09-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 BER92_RS05190 35e9963a5d84015a8685389d48c3db64 113 PANTHER PTHR13501 1 109 5.1E-47 T 16-09-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 BER92_RS05190 35e9963a5d84015a8685389d48c3db64 113 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 3 112 28.306 T 16-09-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 BER92_RS05190 35e9963a5d84015a8685389d48c3db64 113 Pfam PF00237 Ribosomal protein L22p/L17e 10 109 7.5E-32 T 16-09-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 BER92_RS05190 35e9963a5d84015a8685389d48c3db64 113 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 7 109 3.3E-45 T 16-09-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 BER92_RS05190 35e9963a5d84015a8685389d48c3db64 113 Gene3D G3DSA:3.90.470.10 3 111 3.7E-41 T 16-09-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 BER92_RS07440 e466f1fe5de9ffb4e698103030164fc7 451 Pfam PF01609 Transposase DDE domain 284 407 8.9E-6 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS07440 e466f1fe5de9ffb4e698103030164fc7 451 PANTHER PTHR33803:SF1 1 451 0.0 T 16-09-2016 BER92_RS07440 e466f1fe5de9ffb4e698103030164fc7 451 Pfam PF05598 Transposase domain (DUF772) 59 133 8.6E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS07440 e466f1fe5de9ffb4e698103030164fc7 451 PANTHER PTHR33803 1 451 0.0 T 16-09-2016 BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 Gene3D G3DSA:1.10.3210.10 146 312 4.9E-17 T 16-09-2016 IPR006674 HD domain BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 Pfam PF13487 HD domain 202 264 1.7E-16 T 16-09-2016 BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 PANTHER PTHR26402:SF495 239 267 7.6E-54 T 16-09-2016 BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 SUPERFAMILY SSF109604 146 314 9.74E-34 T 16-09-2016 BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 SUPERFAMILY SSF52172 3 131 1.57E-33 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 SMART SM00448 4 116 6.2E-33 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 PANTHER PTHR26402:SF495 4 134 7.6E-54 T 16-09-2016 BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 SMART SM00471 146 283 2.1E-6 T 16-09-2016 IPR003607 HD/PDEase domain BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 Gene3D G3DSA:3.40.50.2300 6 127 2.5E-34 T 16-09-2016 BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 Pfam PF00072 Response regulator receiver domain 7 116 7.4E-24 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 PANTHER PTHR26402 239 267 7.6E-54 T 16-09-2016 BER92_RS07445 1063a69dd6962fd79583dba8094f198d 330 PANTHER PTHR26402 4 134 7.6E-54 T 16-09-2016 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 PANTHER PTHR24423 107 385 5.6E-96 T 16-09-2016 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 344 7.5E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 330 7.5E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 366 7.5E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 277 384 7.6E-14 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 SUPERFAMILY SSF55874 220 385 1.17E-29 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 Gene3D G3DSA:1.10.287.130 158 227 1.3E-12 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 Pfam PF00512 His Kinase A (phospho-acceptor) domain 167 231 1.8E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 Gene3D G3DSA:3.30.565.10 238 385 3.5E-29 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 SMART SM00387 275 389 2.9E-23 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 SUPERFAMILY SSF47384 149 231 1.37E-16 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 SMART SM00388 166 231 4.3E-15 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 SMART SM00304 113 165 7.7E-4 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 PANTHER PTHR24423:SF474 107 385 5.6E-96 T 16-09-2016 BER92_RS01450 82ff3ac2abb886166e3c013206579a4e 394 Pfam PF00672 HAMP domain 101 161 5.4E-8 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Gene3D G3DSA:3.10.20.30 1 64 3.3E-22 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 1.7E-215 T 16-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Gene3D G3DSA:3.30.930.10 242 530 8.0E-114 T 16-09-2016 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 PANTHER PTHR11451 1 629 0.0 T 16-09-2016 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 SMART SM00863 170 219 1.6E-20 T 16-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 SUPERFAMILY SSF55186 63 241 1.2E-63 T 16-09-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Pfam PF03129 Anticodon binding domain 541 630 1.1E-20 T 16-09-2016 IPR004154 Anticodon-binding BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Pfam PF02824 TGS domain 2 61 7.2E-10 T 16-09-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Gene3D G3DSA:3.30.980.10 188 224 7.9E-40 T 16-09-2016 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Gene3D G3DSA:3.30.980.10 66 129 7.9E-40 T 16-09-2016 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 321 529 2.2E-39 T 16-09-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 PANTHER PTHR11451:SF31 1 629 0.0 T 16-09-2016 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 SUPERFAMILY SSF81271 2 61 3.2E-14 T 16-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 SUPERFAMILY SSF52954 530 631 3.02E-31 T 16-09-2016 IPR004154 Anticodon-binding BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 4.7E-51 T 16-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 4.7E-51 T 16-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 4.7E-51 T 16-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 4.7E-51 T 16-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 4.7E-51 T 16-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 SUPERFAMILY SSF55681 243 526 6.13E-94 T 16-09-2016 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 33.628 T 16-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Gene3D G3DSA:3.40.50.800 531 631 4.6E-34 T 16-09-2016 IPR004154 Anticodon-binding BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 174 219 1.9E-14 T 16-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 BER92_RS05995 6608e883a8bb456aeb0b37e2ec64686f 634 Gene3D G3DSA:3.30.54.20 130 187 8.4E-18 T 16-09-2016 BER92_RS11140 91bb3601824b68869e020d2640a3a32f 409 PANTHER PTHR32552:SF33 361 409 2.3E-91 T 16-09-2016 BER92_RS11140 91bb3601824b68869e020d2640a3a32f 409 PANTHER PTHR32552:SF33 7 303 2.3E-91 T 16-09-2016 BER92_RS11140 91bb3601824b68869e020d2640a3a32f 409 Gene3D G3DSA:2.40.170.20 368 409 1.9E-30 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS11140 91bb3601824b68869e020d2640a3a32f 409 Gene3D G3DSA:2.40.170.20 8 301 1.9E-30 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS11140 91bb3601824b68869e020d2640a3a32f 409 SUPERFAMILY SSF56935 370 409 3.66E-25 T 16-09-2016 BER92_RS11140 91bb3601824b68869e020d2640a3a32f 409 SUPERFAMILY SSF56935 8 306 3.66E-25 T 16-09-2016 BER92_RS11140 91bb3601824b68869e020d2640a3a32f 409 PANTHER PTHR32552 361 409 2.3E-91 T 16-09-2016 BER92_RS11140 91bb3601824b68869e020d2640a3a32f 409 PANTHER PTHR32552 7 303 2.3E-91 T 16-09-2016 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 PANTHER PTHR30603 8 158 1.2E-241 T 16-09-2016 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 PANTHER PTHR30603 337 624 1.2E-241 T 16-09-2016 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 SUPERFAMILY SSF88946 121 457 4.24E-99 T 16-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 583 609 - T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 SUPERFAMILY SSF88659 463 536 2.94E-21 T 16-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Pfam PF03979 Sigma-70 factor, region 1.1 8 87 1.7E-28 T 16-09-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 SUPERFAMILY SSF88659 520 622 1.77E-27 T 16-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 7 623 45.397 T 16-09-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Pfam PF04546 Sigma-70, non-essential region 145 359 2.3E-52 T 16-09-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Gene3D G3DSA:1.10.10.10 463 514 7.6E-28 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Gene3D G3DSA:1.10.10.10 553 623 1.8E-33 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Pfam PF04545 Sigma-70, region 4 558 611 1.5E-19 T 16-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 386 611 3.1E-38 T 16-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Gene3D G3DSA:1.10.601.10 118 459 8.2E-123 T 16-09-2016 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 PANTHER PTHR30603:SF0 8 158 1.2E-241 T 16-09-2016 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Pfam PF00140 Sigma-70 factor, region 1.2 104 135 4.5E-13 T 16-09-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 PRINTS PR00046 Major sigma-70 factor signature 414 427 3.3E-31 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 PRINTS PR00046 Major sigma-70 factor signature 583 598 3.3E-31 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 PRINTS PR00046 Major sigma-70 factor signature 562 574 3.3E-31 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 PRINTS PR00046 Major sigma-70 factor signature 438 446 3.3E-31 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 PRINTS PR00046 Major sigma-70 factor signature 598 609 3.3E-31 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Pfam PF04539 Sigma-70 region 3 469 545 1.1E-30 T 16-09-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 386 622 2.2E-120 T 16-09-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 Pfam PF04542 Sigma-70 region 2 390 459 4.3E-20 T 16-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 PANTHER PTHR30603:SF0 337 624 1.2E-241 T 16-09-2016 BER92_RS00925 9b984e970e9fad6f35b4fdf9f6ac40b8 625 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 414 427 - T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 Pfam PF01170 Putative RNA methylase family UPF0020 161 372 3.5E-40 T 16-09-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 SUPERFAMILY SSF53335 262 375 2.54E-38 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 SUPERFAMILY SSF53335 143 220 2.54E-38 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 308 314 - T 16-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 Gene3D G3DSA:3.40.50.150 259 375 3.3E-26 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 Gene3D G3DSA:3.40.50.150 144 217 3.3E-26 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 PANTHER PTHR18895 406 681 1.7E-112 T 16-09-2016 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 198 209 - T 16-09-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 SUPERFAMILY SSF53335 401 707 5.53E-57 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 PIRSF PIRSF037618 1 711 1.3E-283 T 16-09-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 Gene3D G3DSA:3.40.50.150 450 709 5.5E-66 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 3 711 29.592 T 16-09-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 SMART SM00981 55 153 4.0E-21 T 16-09-2016 IPR004114 THUMP domain GO:0003723 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 Pfam PF02926 THUMP domain 30 152 2.0E-9 T 16-09-2016 IPR004114 THUMP domain GO:0003723 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 PANTHER PTHR18895:SF62 406 681 1.7E-112 T 16-09-2016 BER92_RS08355 c5ae32ca1b987443cb0fabb2e3d76ced 711 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 486 663 7.8E-16 T 16-09-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 BER92_RS04590 46021f53edc6f05cfe006bf85c16109b 275 SUPERFAMILY SSF53335 11 228 1.84E-37 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS04590 46021f53edc6f05cfe006bf85c16109b 275 Gene3D G3DSA:3.40.50.150 31 236 4.2E-33 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS04590 46021f53edc6f05cfe006bf85c16109b 275 Pfam PF08241 Methyltransferase domain 46 142 4.9E-20 T 16-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 BER92_RS04590 46021f53edc6f05cfe006bf85c16109b 275 PANTHER PTHR10108 19 236 3.4E-28 T 16-09-2016 BER92_RS13755 cabe9b7e95b19862b0ee632d84bb30ba 562 Gene3D G3DSA:2.60.40.1180 472 556 3.6E-24 T 16-09-2016 IPR013780 Glycosyl hydrolase, all-beta BER92_RS13755 cabe9b7e95b19862b0ee632d84bb30ba 562 PANTHER PTHR10030 279 554 2.2E-127 T 16-09-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 BER92_RS13755 cabe9b7e95b19862b0ee632d84bb30ba 562 PANTHER PTHR10030 52 258 2.2E-127 T 16-09-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 BER92_RS13755 cabe9b7e95b19862b0ee632d84bb30ba 562 PIRSF PIRSF001092 61 556 3.8E-89 T 16-09-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 BER92_RS13755 cabe9b7e95b19862b0ee632d84bb30ba 562 Gene3D G3DSA:3.20.20.80 85 449 8.2E-119 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS13755 cabe9b7e95b19862b0ee632d84bb30ba 562 Pfam PF16757 Alpha-L-fucosidase C-terminal domain 480 554 1.4E-7 T 16-09-2016 IPR031919 Alpha-L-fucosidase, C-terminal KEGG: 00511+3.2.1.51 BER92_RS13755 cabe9b7e95b19862b0ee632d84bb30ba 562 Pfam PF01120 Alpha-L-fucosidase 81 445 2.9E-99 T 16-09-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 BER92_RS13755 cabe9b7e95b19862b0ee632d84bb30ba 562 SMART SM00812 87 509 4.8E-214 T 16-09-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 BER92_RS13755 cabe9b7e95b19862b0ee632d84bb30ba 562 SUPERFAMILY SSF51445 87 449 1.49E-105 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS09565 c2a14dfe6944d8ddfe1bb08354c0b8f5 324 Gene3D G3DSA:3.30.1330.60 148 271 2.7E-32 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS09565 c2a14dfe6944d8ddfe1bb08354c0b8f5 324 Pfam PF00691 OmpA family 167 265 1.2E-17 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS09565 c2a14dfe6944d8ddfe1bb08354c0b8f5 324 SUPERFAMILY SSF103088 141 271 1.07E-30 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS09565 c2a14dfe6944d8ddfe1bb08354c0b8f5 324 PANTHER PTHR30329:SF4 4 272 2.2E-67 T 16-09-2016 BER92_RS09565 c2a14dfe6944d8ddfe1bb08354c0b8f5 324 PANTHER PTHR30329 4 272 2.2E-67 T 16-09-2016 BER92_RS09565 c2a14dfe6944d8ddfe1bb08354c0b8f5 324 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 5 57 3.1E-22 T 16-09-2016 IPR025713 Motility protein B, N-terminal domain BER92_RS15540 267636a65ae42080c8b554940b7c66a1 370 PANTHER PTHR30188 33 370 1.0E-180 T 16-09-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 BER92_RS15540 267636a65ae42080c8b554940b7c66a1 370 PANTHER PTHR30188:SF3 33 370 1.0E-180 T 16-09-2016 BER92_RS15540 267636a65ae42080c8b554940b7c66a1 370 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 131 366 1.3E-70 T 16-09-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria BER92_RS15540 267636a65ae42080c8b554940b7c66a1 370 Pfam PF02405 Permease MlaE 154 362 1.5E-67 T 16-09-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 PANTHER PTHR32248 1 459 1.4E-107 T 16-09-2016 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 Pfam PF04552 Sigma-54, DNA binding domain 304 457 1.9E-57 T 16-09-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 456 2.8E-109 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 437 444 - T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 PANTHER PTHR32248:SF4 1 459 1.4E-107 T 16-09-2016 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 PRINTS PR00045 Sigma-54 factor signature 361 373 3.4E-27 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 PRINTS PR00045 Sigma-54 factor signature 432 450 3.4E-27 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 PRINTS PR00045 Sigma-54 factor signature 377 388 3.4E-27 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 PRINTS PR00045 Sigma-54 factor signature 173 190 3.4E-27 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 8 49 1.9E-12 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 Pfam PF04963 Sigma-54 factor, core binding domain 112 288 9.3E-32 T 16-09-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 349 368 - T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10330 a147a859e2837df4f69b30fa162454e2 467 PIRSF PIRSF000774 1 459 2.4E-113 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 SUPERFAMILY SSF52172 445 567 2.56E-28 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 PANTHER PTHR33121:SF13 156 455 8.8E-71 T 16-09-2016 BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 Gene3D G3DSA:3.30.70.270 25 171 3.3E-26 T 16-09-2016 BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 PANTHER PTHR33121 156 455 8.8E-71 T 16-09-2016 BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 Pfam PF00990 Diguanylate cyclase, GGDEF domain 27 163 8.7E-19 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 Gene3D G3DSA:3.20.20.450 183 429 1.5E-83 T 16-09-2016 IPR001633 EAL domain BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 SMART SM00267 11 168 1.9E-7 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 SUPERFAMILY SSF141868 185 432 4.58E-80 T 16-09-2016 IPR001633 EAL domain BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 Gene3D G3DSA:3.40.50.2300 445 569 3.6E-27 T 16-09-2016 BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 Pfam PF00072 Response regulator receiver domain 449 559 1.0E-18 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 29 167 2.3E-15 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 Pfam PF00563 EAL domain 184 419 4.9E-70 T 16-09-2016 IPR001633 EAL domain BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 SMART SM00448 446 558 6.5E-23 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 SUPERFAMILY SSF55073 27 169 4.87E-24 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS10215 4079ad6f4f1b6f82be4d8bc3ef73aa28 573 SMART SM00052 178 424 4.4E-97 T 16-09-2016 IPR001633 EAL domain BER92_RS13515 fb753b1c023e2c8ceaf4a0725ac67f97 179 PANTHER PTHR23091:SF184 1 179 7.6E-82 T 16-09-2016 BER92_RS13515 fb753b1c023e2c8ceaf4a0725ac67f97 179 PANTHER PTHR23091 1 179 7.6E-82 T 16-09-2016 BER92_RS13515 fb753b1c023e2c8ceaf4a0725ac67f97 179 Pfam PF13673 Acetyltransferase (GNAT) domain 45 145 4.8E-13 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS13515 fb753b1c023e2c8ceaf4a0725ac67f97 179 SUPERFAMILY SSF55729 1 155 1.5E-26 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS13515 fb753b1c023e2c8ceaf4a0725ac67f97 179 Gene3D G3DSA:3.40.630.30 5 155 5.0E-28 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Gene3D G3DSA:1.10.268.10 362 495 2.2E-44 T 16-09-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 SUPERFAMILY SSF56719 30 520 1.31E-176 T 16-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 504 1.8E-153 T 16-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 SMART SM00434 11 498 3.5E-277 T 16-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 PANTHER PTHR10169 3 413 0.0 T 16-09-2016 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Gene3D G3DSA:3.90.199.10 34 216 2.8E-82 T 16-09-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 SUPERFAMILY SSF101904 532 739 1.7E-103 T 16-09-2016 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 SUPERFAMILY SSF101904 774 881 1.7E-103 T 16-09-2016 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 PANTHER PTHR10169:SF48 449 737 0.0 T 16-09-2016 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Gene3D G3DSA:3.30.1360.40 236 332 7.4E-39 T 16-09-2016 IPR024946 Arginine repressor C-terminal-like domain BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 PANTHER PTHR10169 773 842 0.0 T 16-09-2016 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 PANTHER PTHR10169:SF48 3 413 0.0 T 16-09-2016 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 873 0.0 T 16-09-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 PANTHER PTHR10169 449 737 0.0 T 16-09-2016 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Gene3D G3DSA:2.120.10.90 531 738 2.5E-126 T 16-09-2016 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Gene3D G3DSA:2.120.10.90 774 873 2.5E-126 T 16-09-2016 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 874 29.257 T 16-09-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 537 579 6.8E-10 T 16-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 777 822 1.4E-16 T 16-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 827 873 1.3E-11 T 16-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 736 8.3E-13 T 16-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 644 687 4.2E-9 T 16-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 587 636 4.2E-10 T 16-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BER92_RS08495 d17765fc42208cb1cc5c5f958d27a8a9 903 PANTHER PTHR10169:SF48 773 842 0.0 T 16-09-2016 BER92_RS11590 3bd6ad3b5f83d9ef0e2a57931049655e 335 Gene3D G3DSA:3.40.367.20 109 305 1.4E-64 T 16-09-2016 BER92_RS11590 3bd6ad3b5f83d9ef0e2a57931049655e 335 PANTHER PTHR30514:SF0 2 330 2.7E-106 T 16-09-2016 BER92_RS11590 3bd6ad3b5f83d9ef0e2a57931049655e 335 Gene3D G3DSA:3.30.420.40 5 108 8.3E-37 T 16-09-2016 BER92_RS11590 3bd6ad3b5f83d9ef0e2a57931049655e 335 PANTHER PTHR30514 2 330 2.7E-106 T 16-09-2016 BER92_RS11590 3bd6ad3b5f83d9ef0e2a57931049655e 335 Hamap MF_00524 Glucokinase [glk]. 5 326 37.459 T 16-09-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BER92_RS11590 3bd6ad3b5f83d9ef0e2a57931049655e 335 TIGRFAM TIGR00749 glk: glucokinase 9 320 2.1E-79 T 16-09-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BER92_RS11590 3bd6ad3b5f83d9ef0e2a57931049655e 335 Pfam PF02685 Glucokinase 9 324 2.6E-110 T 16-09-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BER92_RS11590 3bd6ad3b5f83d9ef0e2a57931049655e 335 SUPERFAMILY SSF53067 8 326 1.2E-58 T 16-09-2016 BER92_RS10840 f8d3a2b956f2d0df2e77927d8299d3e5 161 PANTHER PTHR20941:SF10 1 160 2.2E-64 T 16-09-2016 BER92_RS10840 f8d3a2b956f2d0df2e77927d8299d3e5 161 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 135 2.1E-41 T 16-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS10840 f8d3a2b956f2d0df2e77927d8299d3e5 161 Gene3D G3DSA:3.30.70.560 2 152 9.6E-52 T 16-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS10840 f8d3a2b956f2d0df2e77927d8299d3e5 161 SUPERFAMILY SSF55083 1 147 3.01E-49 T 16-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS10840 f8d3a2b956f2d0df2e77927d8299d3e5 161 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 135 1.6E-33 T 16-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS10840 f8d3a2b956f2d0df2e77927d8299d3e5 161 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 90 101 - T 16-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS10840 f8d3a2b956f2d0df2e77927d8299d3e5 161 PANTHER PTHR20941 1 160 2.2E-64 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 SUPERFAMILY SSF82866 795 1015 1.44E-40 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 Gene3D G3DSA:1.10.3850.10 275 491 2.4E-56 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 Gene3D G3DSA:1.10.3850.10 800 1014 5.7E-46 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PANTHER PTHR32063:SF34 1 1041 0.0 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 SUPERFAMILY SSF82866 290 489 1.7E-46 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 SUPERFAMILY SSF82714 182 265 1.1E-15 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 Gene3D G3DSA:3.30.70.1430 40 139 1.3E-27 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 SUPERFAMILY SSF82693 40 134 4.01E-23 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PANTHER PTHR32063 1 1041 0.0 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 7.8E-59 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 7.8E-59 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 7.8E-59 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 7.8E-59 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 7.8E-59 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 7.8E-59 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 7.8E-59 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 7.8E-59 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 Pfam PF00873 AcrB/AcrD/AcrF family 5 1014 5.7E-285 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 SUPERFAMILY SSF82714 712 791 2.49E-16 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 SUPERFAMILY SSF82693 557 647 1.86E-5 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 Gene3D G3DSA:3.30.70.1440 661 707 1.3E-6 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 Gene3D G3DSA:3.30.2090.10 181 266 6.5E-17 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 Gene3D G3DSA:3.30.2090.10 712 790 1.3E-16 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 SUPERFAMILY SSF82693 135 181 1.44E-21 T 16-09-2016 BER92_RS00300 119f4621b6451e7e7861ed8a6a075a35 1045 SUPERFAMILY SSF82693 268 324 1.44E-21 T 16-09-2016 BER92_RS04605 0ce230d64afb07d254723fd2afa82d19 206 Pfam PF04011 LemA family 8 192 2.2E-66 T 16-09-2016 IPR007156 LemA BER92_RS04605 0ce230d64afb07d254723fd2afa82d19 206 PANTHER PTHR34478 1 195 4.3E-103 T 16-09-2016 BER92_RS04605 0ce230d64afb07d254723fd2afa82d19 206 Gene3D G3DSA:1.20.1440.20 17 192 1.1E-63 T 16-09-2016 IPR023353 LemA-like domain BER92_RS04605 0ce230d64afb07d254723fd2afa82d19 206 SUPERFAMILY SSF140478 26 179 5.62E-54 T 16-09-2016 IPR023353 LemA-like domain BER92_RS04605 0ce230d64afb07d254723fd2afa82d19 206 PANTHER PTHR34478:SF2 1 195 4.3E-103 T 16-09-2016 BER92_RS03040 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS03040 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03040 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS03040 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS17550 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS17550 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS17550 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS17550 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS08280 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS08280 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS08280 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS08280 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS02305 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS02305 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS02305 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS02305 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS01015 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS01015 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01015 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS01015 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS03665 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS03665 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03665 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS03665 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS05395 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS05395 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS05395 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS05395 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS16135 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS16135 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16135 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS16135 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS12320 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS12320 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS12320 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS12320 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS17355 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS17355 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS17355 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS17355 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS15070 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS15070 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS15070 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS15070 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS06615 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS06615 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06615 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS06615 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS09180 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS09180 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09180 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS09180 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS19045 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS19045 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS19045 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS19045 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS14325 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS14325 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14325 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS14325 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS01510 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS01510 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01510 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS01510 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS07765 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS07765 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS07765 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS07765 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS00475 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS00475 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS00475 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS00475 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS00420 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS00420 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS00420 8bef36f8356409a9cfd599a645095fa5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS00420 8bef36f8356409a9cfd599a645095fa5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS02630 a1b1826571ddeaf4a3c0cc1355862bc7 189 PIRSF PIRSF036893 1 184 4.3E-41 T 16-09-2016 IPR022271 Lipocalin, ApoD type BER92_RS02630 a1b1826571ddeaf4a3c0cc1355862bc7 189 Gene3D G3DSA:2.40.128.20 3 173 2.2E-33 T 16-09-2016 IPR012674 Calycin BER92_RS02630 a1b1826571ddeaf4a3c0cc1355862bc7 189 PANTHER PTHR10612 1 173 5.4E-16 T 16-09-2016 BER92_RS02630 a1b1826571ddeaf4a3c0cc1355862bc7 189 SUPERFAMILY SSF50814 13 175 2.48E-28 T 16-09-2016 IPR011038 Calycin-like BER92_RS02630 a1b1826571ddeaf4a3c0cc1355862bc7 189 ProSitePatterns PS00213 Lipocalin signature. 33 44 - T 16-09-2016 IPR022272 Lipocalin family conserved site BER92_RS02630 a1b1826571ddeaf4a3c0cc1355862bc7 189 Pfam PF08212 Lipocalin-like domain 32 173 4.4E-40 T 16-09-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 PANTHER PTHR10357 350 489 1.3E-251 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 385 1034 46.543 T 16-09-2016 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 SUPERFAMILY SSF51445 59 241 4.71E-20 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 Pfam PF00128 Alpha amylase, catalytic domain 595 761 1.2E-4 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 Pfam PF11896 Domain of unknown function (DUF3416) 388 571 1.5E-50 T 16-09-2016 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 PANTHER PTHR10357 522 1038 1.3E-251 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 Gene3D G3DSA:3.20.20.80 57 241 7.2E-13 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 Gene3D G3DSA:3.20.20.80 543 931 8.9E-74 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 Gene3D G3DSA:3.20.20.80 443 488 8.9E-74 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 SUPERFAMILY SSF51445 547 934 1.55E-86 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 PANTHER PTHR10357:SF137 522 1038 1.3E-251 T 16-09-2016 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 SMART SM00642 581 906 4.2E-5 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 PANTHER PTHR10357:SF137 350 489 1.3E-251 T 16-09-2016 BER92_RS18815 5ff2b7453376847ea1e45a49363c2661 1038 Gene3D G3DSA:2.60.40.1180 940 1023 2.7E-5 T 16-09-2016 IPR013780 Glycosyl hydrolase, all-beta BER92_RS16905 5b07c9dc20ca2f7b15b35fed767aa9f5 274 Gene3D G3DSA:3.60.15.10 7 249 1.5E-49 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS16905 5b07c9dc20ca2f7b15b35fed767aa9f5 274 Pfam PF00753 Metallo-beta-lactamase superfamily 14 205 9.1E-18 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS16905 5b07c9dc20ca2f7b15b35fed767aa9f5 274 SMART SM00849 14 205 1.3E-24 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS16905 5b07c9dc20ca2f7b15b35fed767aa9f5 274 PANTHER PTHR11935 5 267 1.5E-144 T 16-09-2016 BER92_RS16905 5b07c9dc20ca2f7b15b35fed767aa9f5 274 PANTHER PTHR11935:SF110 5 267 1.5E-144 T 16-09-2016 BER92_RS16905 5b07c9dc20ca2f7b15b35fed767aa9f5 274 SUPERFAMILY SSF56281 10 250 7.42E-48 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS16545 02f9c40cb0f292396d344efeb77f93a8 190 SUPERFAMILY SSF55120 2 182 1.76E-42 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS16545 02f9c40cb0f292396d344efeb77f93a8 190 PANTHER PTHR21600 123 176 1.2E-74 T 16-09-2016 BER92_RS16545 02f9c40cb0f292396d344efeb77f93a8 190 Pfam PF00849 RNA pseudouridylate synthase 2 148 1.0E-17 T 16-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS16545 02f9c40cb0f292396d344efeb77f93a8 190 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 39 53 - T 16-09-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BER92_RS16545 02f9c40cb0f292396d344efeb77f93a8 190 PANTHER PTHR21600:SF23 1 105 1.2E-74 T 16-09-2016 BER92_RS16545 02f9c40cb0f292396d344efeb77f93a8 190 PANTHER PTHR21600 1 105 1.2E-74 T 16-09-2016 BER92_RS16545 02f9c40cb0f292396d344efeb77f93a8 190 PANTHER PTHR21600:SF23 123 176 1.2E-74 T 16-09-2016 BER92_RS16545 02f9c40cb0f292396d344efeb77f93a8 190 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 6 177 6.1E-52 T 16-09-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 Pfam PF00672 HAMP domain 197 265 6.0E-13 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 186 4.7E-19 T 16-09-2016 IPR024478 4HB MCP domain BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 SUPERFAMILY SSF158472 216 267 2.35E-7 T 16-09-2016 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 PANTHER PTHR32089 432 700 4.4E-134 T 16-09-2016 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 PANTHER PTHR32089 113 250 4.4E-134 T 16-09-2016 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 625 654 5.6E-56 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 195 220 5.6E-56 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 577 606 5.6E-56 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 471 500 5.6E-56 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 548 575 5.6E-56 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 SUPERFAMILY SSF58104 417 698 3.4E-69 T 16-09-2016 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 PANTHER PTHR32089:SF63 432 700 4.4E-134 T 16-09-2016 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 PANTHER PTHR32089:SF63 113 250 4.4E-134 T 16-09-2016 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 SMART SM00283 450 697 6.6E-87 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 SMART SM00304 216 268 3.8E-4 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 SMART SM00304 397 449 110.0 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 SMART SM00304 307 358 18.0 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 513 696 4.8E-57 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS08600 65aefe460a8e706375b7cae94f38dbd7 703 Gene3D G3DSA:1.10.287.950 465 668 1.5E-59 T 16-09-2016 BER92_RS10825 9f9a322cfe9c9d9ded21e751cfe1089f 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 125 3.6E-48 T 16-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 BER92_RS10825 9f9a322cfe9c9d9ded21e751cfe1089f 126 Gene3D G3DSA:2.40.40.20 1 124 6.4E-52 T 16-09-2016 BER92_RS10825 9f9a322cfe9c9d9ded21e751cfe1089f 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 122 2.0E-62 T 16-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 BER92_RS10825 9f9a322cfe9c9d9ded21e751cfe1089f 126 PANTHER PTHR21012 2 126 6.1E-64 T 16-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 BER92_RS10825 9f9a322cfe9c9d9ded21e751cfe1089f 126 SUPERFAMILY SSF50692 1 121 8.32E-46 T 16-09-2016 IPR009010 Aspartate decarboxylase-like domain BER92_RS10825 9f9a322cfe9c9d9ded21e751cfe1089f 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.7E-47 T 16-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 BER92_RS10825 9f9a322cfe9c9d9ded21e751cfe1089f 126 PIRSF PIRSF006246 1 126 4.8E-48 T 16-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 BER92_RS10825 9f9a322cfe9c9d9ded21e751cfe1089f 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 67.272 T 16-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 BER92_RS10825 9f9a322cfe9c9d9ded21e751cfe1089f 126 PANTHER PTHR21012:SF0 2 126 6.1E-64 T 16-09-2016 BER92_RS09600 721924e5e28dd1cc47aa1b2749a98432 97 Pfam PF02303 Helix-destabilising protein 4 75 5.3E-8 T 16-09-2016 IPR003512 Bacteriophage M13, G5P, DNA-binding GO:0003697|GO:0006260 BER92_RS09600 721924e5e28dd1cc47aa1b2749a98432 97 SUPERFAMILY SSF50249 1 89 2.23E-23 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09600 721924e5e28dd1cc47aa1b2749a98432 97 Gene3D G3DSA:2.40.50.140 1 88 3.3E-21 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08335 2cf63ffc3362dbce57606054391f5850 163 PANTHER PTHR36930:SF1 2 163 2.6E-40 T 16-09-2016 BER92_RS08335 2cf63ffc3362dbce57606054391f5850 163 Gene3D G3DSA:2.40.33.20 16 162 5.8E-40 T 16-09-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like BER92_RS08335 2cf63ffc3362dbce57606054391f5850 163 SUPERFAMILY SSF50800 17 162 2.04E-36 T 16-09-2016 IPR011037 Pyruvate kinase-like, insert domain BER92_RS08335 2cf63ffc3362dbce57606054391f5850 163 PANTHER PTHR36930 2 163 2.6E-40 T 16-09-2016 BER92_RS08335 2cf63ffc3362dbce57606054391f5850 163 Pfam PF03473 MOSC domain 57 160 4.0E-6 T 16-09-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 SUPERFAMILY SSF51338 355 382 1.86E-11 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 SUPERFAMILY SSF51338 9 60 1.86E-11 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 PIRSF PIRSF038994 6 384 1.4E-109 T 16-09-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 PANTHER PTHR11113:SF7 4 383 4.9E-149 T 16-09-2016 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 SUPERFAMILY SSF51556 61 355 6.46E-95 T 16-09-2016 IPR032466 Metal-dependent hydrolase BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 Gene3D G3DSA:2.30.40.10 9 62 2.6E-10 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 Gene3D G3DSA:2.30.40.10 341 372 1.4E-4 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 8 381 1.6E-94 T 16-09-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 Gene3D G3DSA:3.20.20.140 63 340 2.2E-90 T 16-09-2016 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 PANTHER PTHR11113 4 383 4.9E-149 T 16-09-2016 BER92_RS02970 785f9efa8cae13815faf0d4e41cac0a0 384 Pfam PF01979 Amidohydrolase family 57 380 2.6E-24 T 16-09-2016 IPR006680 Amidohydrolase-related GO:0016787 BER92_RS09230 60e59465800c3a26eb58d37a773f3c9b 258 Pfam PF00977 Histidine biosynthesis protein 5 238 2.3E-71 T 16-09-2016 IPR006062 Histidine biosynthesis GO:0000105 BER92_RS09230 60e59465800c3a26eb58d37a773f3c9b 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 255 9.8E-101 T 16-09-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 BER92_RS09230 60e59465800c3a26eb58d37a773f3c9b 258 SUPERFAMILY SSF51366 1 255 1.18E-70 T 16-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 BER92_RS09230 60e59465800c3a26eb58d37a773f3c9b 258 PANTHER PTHR21235 1 258 1.3E-110 T 16-09-2016 BER92_RS09230 60e59465800c3a26eb58d37a773f3c9b 258 PANTHER PTHR21235:SF2 1 258 1.3E-110 T 16-09-2016 BER92_RS09230 60e59465800c3a26eb58d37a773f3c9b 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 255 43.484 T 16-09-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 BER92_RS09230 60e59465800c3a26eb58d37a773f3c9b 258 Gene3D G3DSA:3.20.20.70 4 255 1.2E-82 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS08240 d9e4cc65c56bdfa5ed4ef2e1c29b6e51 276 SMART SM00382 54 257 2.3E-14 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS08240 d9e4cc65c56bdfa5ed4ef2e1c29b6e51 276 ProSitePatterns PS00211 ABC transporters family signature. 173 187 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS08240 d9e4cc65c56bdfa5ed4ef2e1c29b6e51 276 PANTHER PTHR24220:SF560 31 271 5.2E-127 T 16-09-2016 BER92_RS08240 d9e4cc65c56bdfa5ed4ef2e1c29b6e51 276 Pfam PF00005 ABC transporter 45 201 1.1E-32 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS08240 d9e4cc65c56bdfa5ed4ef2e1c29b6e51 276 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 30 276 2.2E-115 T 16-09-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 BER92_RS08240 d9e4cc65c56bdfa5ed4ef2e1c29b6e51 276 PANTHER PTHR24220 31 271 5.2E-127 T 16-09-2016 BER92_RS08240 d9e4cc65c56bdfa5ed4ef2e1c29b6e51 276 SUPERFAMILY SSF52540 31 263 7.21E-59 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08240 d9e4cc65c56bdfa5ed4ef2e1c29b6e51 276 Gene3D G3DSA:3.40.50.300 30 270 4.1E-69 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16505 d23b80ebc1da96a7cb2c56215b490e65 424 PANTHER PTHR23501 1 424 1.8E-192 T 16-09-2016 BER92_RS16505 d23b80ebc1da96a7cb2c56215b490e65 424 Gene3D G3DSA:1.20.1250.20 30 209 1.6E-28 T 16-09-2016 BER92_RS16505 d23b80ebc1da96a7cb2c56215b490e65 424 Gene3D G3DSA:1.20.1250.20 228 405 3.4E-17 T 16-09-2016 BER92_RS16505 d23b80ebc1da96a7cb2c56215b490e65 424 SUPERFAMILY SSF103473 23 406 3.79E-60 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS16505 d23b80ebc1da96a7cb2c56215b490e65 424 Pfam PF07690 Major Facilitator Superfamily 32 247 1.5E-23 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS16505 d23b80ebc1da96a7cb2c56215b490e65 424 ProSitePatterns PS00216 Sugar transport proteins signature 1. 82 98 - T 16-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BER92_RS16505 d23b80ebc1da96a7cb2c56215b490e65 424 PANTHER PTHR23501:SF11 1 424 1.8E-192 T 16-09-2016 BER92_RS13285 29eb8c87aa12bbcbffaacaaf09451a78 164 Pfam PF04493 Endonuclease V 79 155 8.2E-17 T 16-09-2016 IPR007581 Endonuclease V GO:0004519|GO:0006281 BER92_RS16275 9fd084949b70174b628ba7b19815192d 306 Gene3D G3DSA:3.40.50.150 103 298 2.8E-37 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS16275 9fd084949b70174b628ba7b19815192d 306 SUPERFAMILY SSF53335 72 300 5.18E-39 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS16275 9fd084949b70174b628ba7b19815192d 306 PANTHER PTHR18895:SF69 16 305 2.6E-142 T 16-09-2016 BER92_RS16275 9fd084949b70174b628ba7b19815192d 306 PANTHER PTHR18895 16 305 2.6E-142 T 16-09-2016 BER92_RS16275 9fd084949b70174b628ba7b19815192d 306 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 4 297 1.3E-65 T 16-09-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BER92_RS16275 9fd084949b70174b628ba7b19815192d 306 PIRSF PIRSF000401 1 306 1.9E-91 T 16-09-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BER92_RS16275 9fd084949b70174b628ba7b19815192d 306 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 304 30.599 T 16-09-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BER92_RS16275 9fd084949b70174b628ba7b19815192d 306 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 304 1.0E-91 T 16-09-2016 BER92_RS01565 b25d3094677d7712d6b25631c5f4bd3e 520 Pfam PF00563 EAL domain 270 501 1.5E-63 T 16-09-2016 IPR001633 EAL domain BER92_RS01565 b25d3094677d7712d6b25631c5f4bd3e 520 Gene3D G3DSA:3.20.20.450 270 512 8.6E-83 T 16-09-2016 IPR001633 EAL domain BER92_RS01565 b25d3094677d7712d6b25631c5f4bd3e 520 PANTHER PTHR33121 74 517 3.4E-119 T 16-09-2016 BER92_RS01565 b25d3094677d7712d6b25631c5f4bd3e 520 PANTHER PTHR33121:SF16 74 517 3.4E-119 T 16-09-2016 BER92_RS01565 b25d3094677d7712d6b25631c5f4bd3e 520 Pfam PF12792 CSS motif domain associated with EAL 39 231 2.3E-32 T 16-09-2016 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain BER92_RS01565 b25d3094677d7712d6b25631c5f4bd3e 520 SMART SM00052 263 507 4.9E-96 T 16-09-2016 IPR001633 EAL domain BER92_RS01565 b25d3094677d7712d6b25631c5f4bd3e 520 SUPERFAMILY SSF141868 270 514 4.45E-77 T 16-09-2016 IPR001633 EAL domain BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 SUPERFAMILY SSF46785 1 82 4.77E-21 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 PANTHER PTHR10108 15 284 4.5E-35 T 16-09-2016 BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 Pfam PF01022 Bacterial regulatory protein, arsR family 15 60 3.1E-15 T 16-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 SMART SM00418 8 88 5.5E-20 T 16-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 Gene3D G3DSA:3.40.50.150 114 311 2.4E-37 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 8.2E-12 T 16-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 8.2E-12 T 16-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 8.2E-12 T 16-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 Pfam PF08241 Methyltransferase domain 152 245 2.6E-24 T 16-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 SUPERFAMILY SSF53335 124 305 4.11E-37 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 PANTHER PTHR10108:SF855 15 284 4.5E-35 T 16-09-2016 BER92_RS08190 c01d45c2d283636cd0f78876a1e40093 331 Gene3D G3DSA:1.10.10.10 1 77 1.6E-22 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 4.1E-16 T 16-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 4.1E-16 T 16-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 4.1E-16 T 16-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 4.1E-16 T 16-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 16-09-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 44 1.0E-9 T 16-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 Pfam PF01165 Ribosomal protein S21 3 56 2.9E-22 T 16-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 22.259 T 16-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 3.8E-24 T 16-09-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 BER92_RS18230 35b943693d9b9050dbf636e6ca69f3cd 71 PANTHER PTHR21109 1 59 2.1E-24 T 16-09-2016 BER92_RS03400 72dda3b3d104790a508de4aa559640a3 672 PANTHER PTHR31998 7 672 0.0 T 16-09-2016 BER92_RS03400 72dda3b3d104790a508de4aa559640a3 672 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 4 672 25.099 T 16-09-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 BER92_RS03400 72dda3b3d104790a508de4aa559640a3 672 Pfam PF03030 Inorganic H+ pyrophosphatase 15 670 1.3E-266 T 16-09-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 BER92_RS03400 72dda3b3d104790a508de4aa559640a3 672 PANTHER PTHR31998:SF0 7 672 0.0 T 16-09-2016 BER92_RS03400 72dda3b3d104790a508de4aa559640a3 672 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 13 671 2.0E-261 T 16-09-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 BER92_RS03400 72dda3b3d104790a508de4aa559640a3 672 PIRSF PIRSF001265 4 672 1.2E-260 T 16-09-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 SUPERFAMILY SSF53850 95 295 2.9E-29 T 16-09-2016 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 PANTHER PTHR30537:SF16 1 294 2.9E-112 T 16-09-2016 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 Gene3D G3DSA:3.40.190.10 95 169 3.8E-7 T 16-09-2016 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 Gene3D G3DSA:3.40.190.10 170 263 6.9E-30 T 16-09-2016 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 2.5E-18 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 PANTHER PTHR30537 1 294 2.9E-112 T 16-09-2016 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 SUPERFAMILY SSF46785 4 88 6.22E-20 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.3E-6 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.3E-6 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.3E-6 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 Pfam PF03466 LysR substrate binding domain 95 293 2.0E-26 T 16-09-2016 IPR005119 LysR, substrate-binding BER92_RS07170 7dbb17e810f1b4aab4246c1046142e63 304 Gene3D G3DSA:1.10.10.10 3 86 3.7E-23 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08175 5e3005139feeb3436597c446e97bacd2 401 SUPERFAMILY SSF48208 12 398 1.09E-121 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS08175 5e3005139feeb3436597c446e97bacd2 401 PANTHER PTHR15108 4 401 5.2E-104 T 16-09-2016 BER92_RS08175 5e3005139feeb3436597c446e97bacd2 401 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 39 389 2.2E-126 T 16-09-2016 BER92_RS08175 5e3005139feeb3436597c446e97bacd2 401 Gene3D G3DSA:1.50.10.10 10 399 2.0E-132 T 16-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 BER92_RS17200 8f8aabbb2dff7de933f818e0383d8e0f 583 Gene3D G3DSA:1.20.1560.10 8 316 5.2E-38 T 16-09-2016 BER92_RS17200 8f8aabbb2dff7de933f818e0383d8e0f 583 SMART SM00382 361 547 6.5E-19 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS17200 8f8aabbb2dff7de933f818e0383d8e0f 583 Pfam PF00005 ABC transporter 352 501 3.7E-34 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS17200 8f8aabbb2dff7de933f818e0383d8e0f 583 PANTHER PTHR24221 24 580 4.9E-181 T 16-09-2016 BER92_RS17200 8f8aabbb2dff7de933f818e0383d8e0f 583 SUPERFAMILY SSF52540 328 571 1.28E-89 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17200 8f8aabbb2dff7de933f818e0383d8e0f 583 SUPERFAMILY SSF90123 7 310 2.22E-45 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS17200 8f8aabbb2dff7de933f818e0383d8e0f 583 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS17200 8f8aabbb2dff7de933f818e0383d8e0f 583 Gene3D G3DSA:3.40.50.300 336 560 9.5E-81 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17200 8f8aabbb2dff7de933f818e0383d8e0f 583 Pfam PF00664 ABC transporter transmembrane region 24 290 4.8E-17 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 224 261 - T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 Pfam PF00202 Aminotransferase class-III 21 400 1.0E-115 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 SUPERFAMILY SSF53383 13 401 1.46E-122 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 Gene3D G3DSA:3.40.640.10 59 303 2.5E-88 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 PANTHER PTHR11986:SF79 12 408 6.5E-187 T 16-09-2016 BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 12 402 45.284 T 16-09-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 15 401 1.7E-142 T 16-09-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 PANTHER PTHR11986 12 408 6.5E-187 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 Gene3D G3DSA:3.90.1150.10 14 58 1.7E-33 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS03475 ee559c7766df96dc0d30ac9a9db8cf9f 408 Gene3D G3DSA:3.90.1150.10 308 402 1.7E-33 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 80 94 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 37 53 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 129 145 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 160 174 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 220 239 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 53 74 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 96 109 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 183 202 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 270 289 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 315 341 9.6E-54 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PANTHER PTHR30222:SF11 1 371 2.0E-155 T 16-09-2016 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 Gene3D G3DSA:3.40.190.10 33 152 6.6E-26 T 16-09-2016 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 SUPERFAMILY SSF53850 32 370 8.78E-98 T 16-09-2016 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PANTHER PTHR30222 1 371 2.0E-155 T 16-09-2016 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 Gene3D G3DSA:3.40.190.10 153 319 1.8E-68 T 16-09-2016 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 PIRSF PIRSF019574 1 371 6.1E-135 T 16-09-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BER92_RS07525 31943f29420e6b9df14c5ff9f9feb5a9 371 Pfam PF13416 Bacterial extracellular solute-binding protein 48 334 1.4E-36 T 16-09-2016 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 PANTHER PTHR15184 1 464 0.0 T 16-09-2016 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 337 346 - T 16-09-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 SUPERFAMILY SSF47917 349 464 4.97E-54 T 16-09-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 SUPERFAMILY SSF52540 75 352 1.3E-89 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 SMART SM00382 140 331 0.0013 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 SUPERFAMILY SSF50615 1 71 1.73E-23 T 16-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 Gene3D G3DSA:2.40.10.170 1 71 6.1E-27 T 16-09-2016 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 Gene3D G3DSA:3.40.50.300 74 347 7.5E-108 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 464 56.143 T 16-09-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 70 4.5E-17 T 16-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 464 1.7E-252 T 16-09-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 346 1.5E-61 T 16-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 Gene3D G3DSA:1.10.1140.10 350 465 8.2E-56 T 16-09-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15895 106b497ce195234959f7c8a0972843a8 468 PANTHER PTHR15184:SF44 1 464 0.0 T 16-09-2016 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 SMART SM00883 2 94 6.1E-52 T 16-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 PANTHER PTHR10772 1 94 2.5E-39 T 16-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 16-09-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 1.1E-32 T 16-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 Gene3D G3DSA:2.30.33.40 2 94 2.8E-34 T 16-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 PRINTS PR00297 10kDa chaperonin signature 3 18 2.4E-32 T 16-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 PRINTS PR00297 10kDa chaperonin signature 60 72 2.4E-32 T 16-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 PRINTS PR00297 10kDa chaperonin signature 25 46 2.4E-32 T 16-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 PRINTS PR00297 10kDa chaperonin signature 81 94 2.4E-32 T 16-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 25.726 T 16-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BER92_RS17510 53393dcdc19b650f8d8d7d6ceb0c1abc 95 SUPERFAMILY SSF50129 1 94 7.89E-32 T 16-09-2016 IPR011032 GroES-like BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 SUPERFAMILY SSF116726 337 413 4.19E-15 T 16-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 Gene3D G3DSA:3.30.70.1450 336 413 8.8E-19 T 16-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 Gene3D G3DSA:3.30.70.1450 245 318 3.4E-10 T 16-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 PANTHER PTHR10283:SF43 358 620 1.1E-236 T 16-09-2016 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 PANTHER PTHR10283:SF43 1 218 1.1E-236 T 16-09-2016 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 Pfam PF02080 TrkA-C domain 338 403 2.5E-9 T 16-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 Pfam PF02080 TrkA-C domain 246 313 4.1E-8 T 16-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 PANTHER PTHR10283 358 620 1.1E-236 T 16-09-2016 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 PANTHER PTHR10283 1 218 1.1E-236 T 16-09-2016 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 Pfam PF03600 Citrate transporter 23 563 3.1E-39 T 16-09-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 BER92_RS05355 fe7b555cc17a9b9f2cf55d444c87ea58 620 SUPERFAMILY SSF116726 240 313 3.79E-9 T 16-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 PANTHER PTHR11739:SF4 17 383 6.2E-151 T 16-09-2016 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 SUPERFAMILY SSF48256 17 377 9.55E-122 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 PIRSF PIRSF001369 10 384 3.9E-109 T 16-09-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 16 383 2.2E-151 T 16-09-2016 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 Gene3D G3DSA:1.10.580.10 21 244 1.7E-74 T 16-09-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 Pfam PF00285 Citrate synthase, C-terminal domain 17 365 3.1E-111 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 Gene3D G3DSA:1.10.230.10 245 330 1.2E-28 T 16-09-2016 IPR016143 Citrate synthase-like, small alpha subdomain BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 PRINTS PR00143 Citrate synthase signature 336 350 2.0E-36 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 PRINTS PR00143 Citrate synthase signature 259 279 2.0E-36 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 PRINTS PR00143 Citrate synthase signature 134 147 2.0E-36 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 PRINTS PR00143 Citrate synthase signature 206 234 2.0E-36 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 PRINTS PR00143 Citrate synthase signature 184 199 2.0E-36 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 PRINTS PR00143 Citrate synthase signature 316 332 2.0E-36 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 ProSitePatterns PS00480 Citrate synthase signature. 266 278 - T 16-09-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 BER92_RS13935 34fe0136372c245fcb295c1b56ce27da 384 PANTHER PTHR11739 17 383 6.2E-151 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS07580 af6ff2604108e78d6f7811ea012f3553 422 Gene3D G3DSA:2.40.50.100 60 93 9.1E-19 T 16-09-2016 BER92_RS07580 af6ff2604108e78d6f7811ea012f3553 422 Gene3D G3DSA:2.40.50.100 168 202 9.1E-19 T 16-09-2016 BER92_RS07580 af6ff2604108e78d6f7811ea012f3553 422 SUPERFAMILY SSF111369 50 292 2.22E-69 T 16-09-2016 BER92_RS07580 af6ff2604108e78d6f7811ea012f3553 422 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 367 1.1E-73 T 16-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 BER92_RS07580 af6ff2604108e78d6f7811ea012f3553 422 PANTHER PTHR30158:SF3 10 395 3.1E-126 T 16-09-2016 BER92_RS07580 af6ff2604108e78d6f7811ea012f3553 422 PANTHER PTHR30158 10 395 3.1E-126 T 16-09-2016 BER92_RS07580 af6ff2604108e78d6f7811ea012f3553 422 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 289 2.9E-11 T 16-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BER92_RS06330 126526c7f1c9424ffa337f4a2ddd87b5 289 PANTHER PTHR24559:SF185 28 123 1.1E-83 T 16-09-2016 BER92_RS06330 126526c7f1c9424ffa337f4a2ddd87b5 289 Gene3D G3DSA:3.30.420.10 190 273 5.1E-21 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS06330 126526c7f1c9424ffa337f4a2ddd87b5 289 Pfam PF13276 HTH-like domain 46 97 5.4E-10 T 16-09-2016 IPR025948 HTH-like domain BER92_RS06330 126526c7f1c9424ffa337f4a2ddd87b5 289 PANTHER PTHR24559:SF185 189 286 1.1E-83 T 16-09-2016 BER92_RS06330 126526c7f1c9424ffa337f4a2ddd87b5 289 SUPERFAMILY SSF53098 190 276 2.28E-19 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS06330 126526c7f1c9424ffa337f4a2ddd87b5 289 PANTHER PTHR24559 189 286 1.1E-83 T 16-09-2016 BER92_RS06330 126526c7f1c9424ffa337f4a2ddd87b5 289 PANTHER PTHR24559 28 123 1.1E-83 T 16-09-2016 BER92_RS06330 126526c7f1c9424ffa337f4a2ddd87b5 289 Pfam PF13683 Integrase core domain 207 272 5.5E-28 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS17880 f324c8f2e9f9f155e742d06a93219e62 128 Pfam PF01521 Iron-sulphur cluster biosynthesis 23 123 6.3E-19 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS17880 f324c8f2e9f9f155e742d06a93219e62 128 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 109 126 - T 16-09-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site BER92_RS17880 f324c8f2e9f9f155e742d06a93219e62 128 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 7 128 35.585 T 16-09-2016 IPR023063 FeS cluster insertion protein ErpA GO:0016226 BER92_RS17880 f324c8f2e9f9f155e742d06a93219e62 128 Gene3D G3DSA:2.60.300.12 21 114 6.0E-31 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS17880 f324c8f2e9f9f155e742d06a93219e62 128 PANTHER PTHR10072 2 128 9.8E-49 T 16-09-2016 BER92_RS17880 f324c8f2e9f9f155e742d06a93219e62 128 SUPERFAMILY SSF89360 23 117 1.9E-29 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS17880 f324c8f2e9f9f155e742d06a93219e62 128 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 25 128 1.4E-37 T 16-09-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 BER92_RS18990 9d33e4cbfc0447461b484b5dd7844c14 303 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 23 283 53.639 T 16-09-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 BER92_RS18990 9d33e4cbfc0447461b484b5dd7844c14 303 SUPERFAMILY SSF52402 31 247 1.33E-52 T 16-09-2016 BER92_RS18990 9d33e4cbfc0447461b484b5dd7844c14 303 PIRSF PIRSF004976 11 286 1.5E-68 T 16-09-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 BER92_RS18990 9d33e4cbfc0447461b484b5dd7844c14 303 Pfam PF01171 PP-loop family 53 217 1.0E-16 T 16-09-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal BER92_RS18990 9d33e4cbfc0447461b484b5dd7844c14 303 PANTHER PTHR11807 29 274 5.2E-105 T 16-09-2016 BER92_RS18990 9d33e4cbfc0447461b484b5dd7844c14 303 Gene3D G3DSA:3.40.50.620 35 219 6.3E-22 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS18990 9d33e4cbfc0447461b484b5dd7844c14 303 PANTHER PTHR11807:SF16 29 274 5.2E-105 T 16-09-2016 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 Gene3D G3DSA:3.90.800.10 68 180 1.9E-32 T 16-09-2016 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 SUPERFAMILY SSF52374 4 295 1.82E-107 T 16-09-2016 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 SUPERFAMILY SSF48163 299 461 6.02E-36 T 16-09-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 16-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 PANTHER PTHR11451:SF41 4 313 8.6E-95 T 16-09-2016 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 305 1.2E-102 T 16-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 Gene3D G3DSA:1.10.10.350 364 461 2.2E-26 T 16-09-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 462 9.2E-169 T 16-09-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 PANTHER PTHR11451 4 313 8.6E-95 T 16-09-2016 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 Gene3D G3DSA:1.10.1160.10 233 313 2.2E-31 T 16-09-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 461 32.481 T 16-09-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 Gene3D G3DSA:3.40.50.620 181 230 3.0E-52 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 Gene3D G3DSA:3.40.50.620 3 67 3.0E-52 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 4.1E-24 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 4.1E-24 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 4.1E-24 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 4.1E-24 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS13195 55de71aeeda943b62ada4291aada2f78 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 4.1E-24 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS10335 ca01793c7ecf9f9af01f72dcc70b0a35 127 PANTHER PTHR26402 4 125 1.6E-30 T 16-09-2016 BER92_RS10335 ca01793c7ecf9f9af01f72dcc70b0a35 127 SMART SM00448 4 117 2.9E-20 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10335 ca01793c7ecf9f9af01f72dcc70b0a35 127 Pfam PF00072 Response regulator receiver domain 6 114 1.7E-22 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10335 ca01793c7ecf9f9af01f72dcc70b0a35 127 Gene3D G3DSA:3.40.50.2300 2 125 1.3E-27 T 16-09-2016 BER92_RS10335 ca01793c7ecf9f9af01f72dcc70b0a35 127 PANTHER PTHR26402:SF506 4 125 1.6E-30 T 16-09-2016 BER92_RS10335 ca01793c7ecf9f9af01f72dcc70b0a35 127 SUPERFAMILY SSF52172 1 121 4.13E-27 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS09285 6315b276ff2887ac11b0ce1518fc8d83 191 Gene3D G3DSA:3.90.79.10 46 178 4.5E-16 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS09285 6315b276ff2887ac11b0ce1518fc8d83 191 SUPERFAMILY SSF55811 48 180 2.57E-17 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS09285 6315b276ff2887ac11b0ce1518fc8d83 191 Pfam PF00293 NUDIX domain 56 173 3.9E-9 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS00115 9077fb46c3e6c3e2b93b67475f780f93 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 289 6.9E-47 T 16-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BER92_RS00115 9077fb46c3e6c3e2b93b67475f780f93 328 Gene3D G3DSA:3.40.50.720 114 290 7.4E-51 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00115 9077fb46c3e6c3e2b93b67475f780f93 328 Gene3D G3DSA:3.40.50.720 1 113 3.1E-26 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00115 9077fb46c3e6c3e2b93b67475f780f93 328 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 20 320 2.1E-15 T 16-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 BER92_RS00115 9077fb46c3e6c3e2b93b67475f780f93 328 SUPERFAMILY SSF51735 106 289 4.54E-46 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00115 9077fb46c3e6c3e2b93b67475f780f93 328 SUPERFAMILY SSF52283 1 134 8.08E-22 T 16-09-2016 BER92_RS00115 9077fb46c3e6c3e2b93b67475f780f93 328 PANTHER PTHR10996 1 313 3.9E-90 T 16-09-2016 BER92_RS00115 9077fb46c3e6c3e2b93b67475f780f93 328 PANTHER PTHR10996:SF127 1 313 3.9E-90 T 16-09-2016 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 1 299 22.472 T 16-09-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 351 396 1.6E-14 T 16-09-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 PANTHER PTHR11807 13 427 2.8E-77 T 16-09-2016 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 SUPERFAMILY SSF52402 10 221 4.41E-59 T 16-09-2016 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 14 195 6.1E-48 T 16-09-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 PANTHER PTHR11807:SF2 13 427 2.8E-77 T 16-09-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 Pfam PF01171 PP-loop family 14 192 4.9E-53 T 16-09-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 SUPERFAMILY SSF82829 230 311 9.68E-14 T 16-09-2016 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 SUPERFAMILY SSF56037 315 426 2.46E-21 T 16-09-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 Pfam PF09179 TilS substrate binding domain 240 307 8.7E-10 T 16-09-2016 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 Pfam PF11734 TilS substrate C-terminal domain 351 424 8.7E-17 T 16-09-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 Gene3D G3DSA:3.40.50.620 12 172 3.9E-11 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS12710 7c5326e2ecb1567e2c760103cbf44183 431 SMART SM00977 351 424 5.8E-17 T 16-09-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BER92_RS16475 dcf8a383814e8fc91a7af01d58323dad 313 PANTHER PTHR32063:SF13 96 312 9.0E-74 T 16-09-2016 BER92_RS16475 dcf8a383814e8fc91a7af01d58323dad 313 SUPERFAMILY SSF82714 169 259 5.1E-19 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS16475 dcf8a383814e8fc91a7af01d58323dad 313 PANTHER PTHR32063 96 312 9.0E-74 T 16-09-2016 BER92_RS16475 dcf8a383814e8fc91a7af01d58323dad 313 Pfam PF00873 AcrB/AcrD/AcrF family 90 312 1.6E-49 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16475 dcf8a383814e8fc91a7af01d58323dad 313 Gene3D G3DSA:3.30.2090.10 168 262 1.3E-22 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS16475 dcf8a383814e8fc91a7af01d58323dad 313 SUPERFAMILY SSF82693 122 169 7.85E-20 T 16-09-2016 BER92_RS16475 dcf8a383814e8fc91a7af01d58323dad 313 SUPERFAMILY SSF82693 261 312 7.85E-20 T 16-09-2016 BER92_RS16475 dcf8a383814e8fc91a7af01d58323dad 313 Gene3D G3DSA:3.30.70.1320 263 312 2.6E-27 T 16-09-2016 BER92_RS16475 dcf8a383814e8fc91a7af01d58323dad 313 Gene3D G3DSA:3.30.70.1320 121 166 2.6E-27 T 16-09-2016 BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 Pfam PF00990 Diguanylate cyclase, GGDEF domain 245 380 8.9E-7 T 16-09-2016 IPR000160 GGDEF domain BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 Pfam PF00563 EAL domain 409 633 1.1E-37 T 16-09-2016 IPR001633 EAL domain BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 SUPERFAMILY SSF55073 245 388 1.1E-11 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 PANTHER PTHR26402:SF50 521 538 6.9E-39 T 16-09-2016 BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 PANTHER PTHR26402:SF50 105 236 6.9E-39 T 16-09-2016 BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 Gene3D G3DSA:3.30.70.270 243 386 2.0E-12 T 16-09-2016 BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 SUPERFAMILY SSF52172 101 228 2.85E-32 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 SMART SM00267 230 395 7.7E-6 T 16-09-2016 IPR000160 GGDEF domain BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 SUPERFAMILY SSF141868 409 633 2.35E-36 T 16-09-2016 IPR001633 EAL domain BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 PANTHER PTHR26402 521 538 6.9E-39 T 16-09-2016 BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 PANTHER PTHR26402 105 236 6.9E-39 T 16-09-2016 BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 Gene3D G3DSA:3.20.20.450 409 634 3.4E-36 T 16-09-2016 IPR001633 EAL domain BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 SMART SM00052 399 641 1.1E-11 T 16-09-2016 IPR001633 EAL domain BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 SMART SM00448 105 218 9.7E-29 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 Gene3D G3DSA:3.40.50.2300 103 229 1.5E-31 T 16-09-2016 BER92_RS17900 ade17bc044ec0d81cdc66c63db41a01f 649 Pfam PF00072 Response regulator receiver domain 107 218 1.9E-21 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 PANTHER PTHR11911 1 280 6.5E-239 T 16-09-2016 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 SUPERFAMILY SSF54631 94 202 1.89E-27 T 16-09-2016 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 452 4.5E-187 T 16-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 Pfam PF00571 CBS domain 148 200 4.1E-6 T 16-09-2016 IPR000644 CBS domain BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 Pfam PF00571 CBS domain 95 139 8.3E-11 T 16-09-2016 IPR000644 CBS domain BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 471 1.1E-155 T 16-09-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 PANTHER PTHR11911 298 483 6.5E-239 T 16-09-2016 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 Gene3D G3DSA:3.20.20.70 2 483 1.9E-196 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 SMART SM01240 7 471 0.0 T 16-09-2016 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 484 81.41 T 16-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 PANTHER PTHR11911:SF6 298 483 6.5E-239 T 16-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 PANTHER PTHR11911:SF6 1 280 6.5E-239 T 16-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 PIRSF PIRSF000130 1 485 1.8E-199 T 16-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 294 306 - T 16-09-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 SMART SM00116 157 205 1.1E-7 T 16-09-2016 IPR000644 CBS domain BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 SMART SM00116 96 143 1.2E-10 T 16-09-2016 IPR000644 CBS domain BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 SUPERFAMILY SSF51412 216 475 1.57E-122 T 16-09-2016 BER92_RS09085 24fca23b64475231083dc3bb628d9578 485 SUPERFAMILY SSF51412 2 90 1.57E-122 T 16-09-2016 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 SUPERFAMILY SSF52374 5 203 1.9E-130 T 16-09-2016 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 SUPERFAMILY SSF52374 421 662 1.9E-130 T 16-09-2016 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 3 934 20.825 T 16-09-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 Gene3D G3DSA:3.40.50.620 423 653 1.9E-129 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 Gene3D G3DSA:3.40.50.620 18 206 1.9E-129 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 SUPERFAMILY SSF50677 206 421 2.62E-41 T 16-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 858 9.5E-265 T 16-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PANTHER PTHR11946 7 216 0.0 T 16-09-2016 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PANTHER PTHR11946 289 941 0.0 T 16-09-2016 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 Gene3D G3DSA:1.10.730.10 657 843 6.3E-41 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 Gene3D G3DSA:3.90.740.10 241 422 2.4E-45 T 16-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PANTHER PTHR11946:SF11 7 216 0.0 T 16-09-2016 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PANTHER PTHR11946:SF11 289 941 0.0 T 16-09-2016 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PANTHER PTHR11946:SF11 236 261 0.0 T 16-09-2016 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 Pfam PF08264 Anticodon-binding domain of tRNA 701 856 3.7E-27 T 16-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 240 263 1.1E-30 T 16-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 577 586 1.1E-30 T 16-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 52 63 1.1E-30 T 16-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 419 434 1.1E-30 T 16-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 544 557 1.1E-30 T 16-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 SUPERFAMILY SSF47323 668 934 2.43E-67 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 29 657 7.3E-204 T 16-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 PANTHER PTHR11946 236 261 0.0 T 16-09-2016 BER92_RS14830 59c778c8fe443c0eaf7408df90ff9dff 943 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 59 70 - T 16-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS10285 74b8be791471d8deeed50ebd651591ae 394 PANTHER PTHR33308 220 358 2.6E-28 T 16-09-2016 BER92_RS10285 74b8be791471d8deeed50ebd651591ae 394 SMART SM00047 209 370 1.0E-40 T 16-09-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 BER92_RS10285 74b8be791471d8deeed50ebd651591ae 394 Pfam PF10135 Rod binding protein 38 84 1.6E-12 T 16-09-2016 IPR019301 Flagellar protein FlgJ, N-terminal BER92_RS10285 74b8be791471d8deeed50ebd651591ae 394 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 227 358 5.1E-20 T 16-09-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 BER92_RS10285 74b8be791471d8deeed50ebd651591ae 394 PANTHER PTHR33308:SF3 220 358 2.6E-28 T 16-09-2016 BER92_RS10285 74b8be791471d8deeed50ebd651591ae 394 PRINTS PR01002 Flagellar protein FlgJ signature 16 39 1.6E-11 T 16-09-2016 BER92_RS10285 74b8be791471d8deeed50ebd651591ae 394 PRINTS PR01002 Flagellar protein FlgJ signature 61 83 1.6E-11 T 16-09-2016 BER92_RS08630 be6aa093fd07d0b526b80f034e5e7439 236 Gene3D G3DSA:1.25.40.10 141 225 1.1E-10 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS08630 be6aa093fd07d0b526b80f034e5e7439 236 Gene3D G3DSA:1.25.40.10 103 140 1.9E-4 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS08630 be6aa093fd07d0b526b80f034e5e7439 236 SUPERFAMILY SSF48452 101 208 7.83E-9 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 TIGRFAM TIGR01229 rocF_arginase: arginase 9 303 8.3E-87 T 16-09-2016 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: REACT_13|UniPathway: UPA00158 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 ProSitePatterns PS01053 Arginase family signature. 229 250 - T 16-09-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 Pfam PF00491 Arginase family 8 299 7.4E-76 T 16-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 Gene3D G3DSA:3.40.800.10 4 301 3.3E-88 T 16-09-2016 IPR023696 Ureohydrolase domain BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 PIRSF PIRSF036979 1 303 5.0E-34 T 16-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 PANTHER PTHR11358:SF2 1 301 2.8E-110 T 16-09-2016 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 PRINTS PR00116 Arginase signature 97 112 6.5E-45 T 16-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 PRINTS PR00116 Arginase signature 178 196 6.5E-45 T 16-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 PRINTS PR00116 Arginase signature 124 151 6.5E-45 T 16-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 PRINTS PR00116 Arginase signature 261 275 6.5E-45 T 16-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 PRINTS PR00116 Arginase signature 226 255 6.5E-45 T 16-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 PANTHER PTHR11358 1 301 2.8E-110 T 16-09-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 BER92_RS01350 471e5ae9412623f652db65deff1e18b8 307 SUPERFAMILY SSF52768 7 302 1.1E-89 T 16-09-2016 BER92_RS15005 72a46a29db06bc8a26169c71ffc26217 269 Gene3D G3DSA:3.40.50.300 3 246 1.3E-56 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15005 72a46a29db06bc8a26169c71ffc26217 269 PANTHER PTHR13696 2 257 3.3E-87 T 16-09-2016 BER92_RS15005 72a46a29db06bc8a26169c71ffc26217 269 PIRSF PIRSF003092 1 269 8.5E-88 T 16-09-2016 IPR025501 ATP binding protein MinD BER92_RS15005 72a46a29db06bc8a26169c71ffc26217 269 PANTHER PTHR13696:SF1 2 257 3.3E-87 T 16-09-2016 BER92_RS15005 72a46a29db06bc8a26169c71ffc26217 269 SUPERFAMILY SSF52540 4 267 3.69E-52 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15005 72a46a29db06bc8a26169c71ffc26217 269 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 266 1.7E-108 T 16-09-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0000918|GO:0016887 BER92_RS15005 72a46a29db06bc8a26169c71ffc26217 269 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 213 1.7E-30 T 16-09-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BER92_RS02585 6b4eaef06d8208d1062b96625cf9c3d5 495 PANTHER PTHR11814:SF76 10 488 2.2E-267 T 16-09-2016 BER92_RS02585 6b4eaef06d8208d1062b96625cf9c3d5 495 SUPERFAMILY SSF52091 401 483 2.35E-12 T 16-09-2016 IPR002645 STAS domain BER92_RS02585 6b4eaef06d8208d1062b96625cf9c3d5 495 Pfam PF01740 STAS domain 401 483 1.1E-6 T 16-09-2016 IPR002645 STAS domain BER92_RS02585 6b4eaef06d8208d1062b96625cf9c3d5 495 Gene3D G3DSA:3.30.750.24 401 483 8.5E-9 T 16-09-2016 IPR002645 STAS domain BER92_RS02585 6b4eaef06d8208d1062b96625cf9c3d5 495 Pfam PF00916 Sulfate permease family 18 145 2.1E-20 T 16-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BER92_RS02585 6b4eaef06d8208d1062b96625cf9c3d5 495 Pfam PF00916 Sulfate permease family 146 348 2.7E-27 T 16-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BER92_RS02585 6b4eaef06d8208d1062b96625cf9c3d5 495 PANTHER PTHR11814 10 488 2.2E-267 T 16-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 BER92_RS02385 8c313e997fc24ab4496166152b52ba07 159 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 21 147 3.4E-42 T 16-09-2016 IPR011605 NusB antitermination factor GO:0006353 BER92_RS02385 8c313e997fc24ab4496166152b52ba07 159 Pfam PF01029 NusB family 23 146 5.4E-33 T 16-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BER92_RS02385 8c313e997fc24ab4496166152b52ba07 159 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 19 150 23.017 T 16-09-2016 IPR011605 NusB antitermination factor GO:0006353 BER92_RS02385 8c313e997fc24ab4496166152b52ba07 159 SUPERFAMILY SSF48013 19 150 4.19E-40 T 16-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BER92_RS02385 8c313e997fc24ab4496166152b52ba07 159 PANTHER PTHR11078 7 154 2.3E-49 T 16-09-2016 IPR011605 NusB antitermination factor GO:0006353 BER92_RS02385 8c313e997fc24ab4496166152b52ba07 159 Gene3D G3DSA:1.10.940.10 21 151 2.4E-42 T 16-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 3 301 54.508 T 16-09-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 PANTHER PTHR23293 1 157 8.5E-86 T 16-09-2016 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 PIRSF PIRSF002936 1 301 2.6E-145 T 16-09-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 Gene3D G3DSA:3.40.50.620 243 252 2.1E-56 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 Gene3D G3DSA:3.40.50.620 6 209 2.1E-56 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 8 301 2.7E-146 T 16-09-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 PANTHER PTHR23293:SF6 244 301 8.5E-86 T 16-09-2016 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 PANTHER PTHR23293 244 301 8.5E-86 T 16-09-2016 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 256 3.0E-57 T 16-09-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 PANTHER PTHR23293:SF6 177 210 8.5E-86 T 16-09-2016 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 PANTHER PTHR23293:SF6 1 157 8.5E-86 T 16-09-2016 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 SUPERFAMILY SSF52402 2 209 1.68E-68 T 16-09-2016 BER92_RS16715 291f1b9da9373a298078df1b84ba34d6 301 PANTHER PTHR23293 177 210 8.5E-86 T 16-09-2016 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 SUPERFAMILY SSF101904 501 743 3.92E-46 T 16-09-2016 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 Gene3D G3DSA:3.30.1360.40 242 335 1.5E-23 T 16-09-2016 IPR024946 Arginine repressor C-terminal-like domain BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 472 1.1E-132 T 16-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 Gene3D G3DSA:2.120.10.90 500 709 1.4E-26 T 16-09-2016 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 SMART SM00434 15 465 2.7E-220 T 16-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 649 698 2.5E-6 T 16-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 602 639 0.18 T 16-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 SUPERFAMILY SSF56719 35 487 1.29E-150 T 16-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 Gene3D G3DSA:3.90.199.10 35 241 2.2E-102 T 16-09-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 Gene3D G3DSA:3.90.199.10 337 402 2.2E-102 T 16-09-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 13 742 0.0 T 16-09-2016 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 PANTHER PTHR10169 5 526 0.0 T 16-09-2016 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 PANTHER PTHR10169:SF30 5 526 0.0 T 16-09-2016 BER92_RS06535 ac63101b32c211e34a5443ebc9cb8881 747 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 745 33.565 T 16-09-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS05205 f0a20dc048c5c1a59d554faeabd52a2d 61 Gene3D G3DSA:1.10.287.310 1 57 9.1E-22 T 16-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05205 f0a20dc048c5c1a59d554faeabd52a2d 61 SUPERFAMILY SSF46561 1 58 4.71E-18 T 16-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05205 f0a20dc048c5c1a59d554faeabd52a2d 61 PANTHER PTHR10916 1 57 3.6E-21 T 16-09-2016 BER92_RS05205 f0a20dc048c5c1a59d554faeabd52a2d 61 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 14.983 T 16-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05205 f0a20dc048c5c1a59d554faeabd52a2d 61 PANTHER PTHR10916:SF0 1 57 3.6E-21 T 16-09-2016 BER92_RS05205 f0a20dc048c5c1a59d554faeabd52a2d 61 Pfam PF00831 Ribosomal L29 protein 4 57 1.4E-20 T 16-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05205 f0a20dc048c5c1a59d554faeabd52a2d 61 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 55 3.7E-20 T 16-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 Pfam PF00171 Aldehyde dehydrogenase family 10 284 5.0E-13 T 16-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 2 413 41.194 T 16-09-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 PANTHER PTHR11063:SF8 1 413 6.8E-167 T 16-09-2016 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 Gene3D G3DSA:3.40.605.10 2 221 2.6E-94 T 16-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 Gene3D G3DSA:3.40.605.10 372 413 2.6E-94 T 16-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 Gene3D G3DSA:3.40.309.10 224 371 1.5E-37 T 16-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 PANTHER PTHR11063 1 413 6.8E-167 T 16-09-2016 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 PIRSF PIRSF000151 1 414 1.1E-171 T 16-09-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 320 341 - T 16-09-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 SUPERFAMILY SSF53720 6 413 1.22E-107 T 16-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 BER92_RS11840 5f028df7248ed66bd6d7f751d64b595a 414 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 11 401 6.7E-140 T 16-09-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 BER92_RS12715 17838b87e1a7bbede62cc6c013da2c53 86 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 28 56 3.0E-10 T 16-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BER92_RS12715 17838b87e1a7bbede62cc6c013da2c53 86 PANTHER PTHR34137 2 69 1.4E-23 T 16-09-2016 BER92_RS12715 17838b87e1a7bbede62cc6c013da2c53 86 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 15 68 6.5E-22 T 16-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BER92_RS12715 17838b87e1a7bbede62cc6c013da2c53 86 PIRSF PIRSF006488 1 85 2.8E-25 T 16-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BER92_RS12715 17838b87e1a7bbede62cc6c013da2c53 86 Pfam PF02609 Exonuclease VII small subunit 15 65 4.1E-19 T 16-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BER92_RS12715 17838b87e1a7bbede62cc6c013da2c53 86 Gene3D G3DSA:1.10.287.1040 14 80 1.3E-25 T 16-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BER92_RS12715 17838b87e1a7bbede62cc6c013da2c53 86 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 14 74 15.679 T 16-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BER92_RS12715 17838b87e1a7bbede62cc6c013da2c53 86 SUPERFAMILY SSF116842 13 72 4.05E-18 T 16-09-2016 BER92_RS03215 9f761a0b8cdac76addb6745d62474d42 87 Pfam PF01527 Transposase 2 70 1.9E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS03215 9f761a0b8cdac76addb6745d62474d42 87 Gene3D G3DSA:1.10.10.60 7 83 2.2E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03215 9f761a0b8cdac76addb6745d62474d42 87 PANTHER PTHR33609 1 87 6.1E-43 T 16-09-2016 BER92_RS03215 9f761a0b8cdac76addb6745d62474d42 87 SUPERFAMILY SSF46689 2 82 5.38E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03065 9f761a0b8cdac76addb6745d62474d42 87 Pfam PF01527 Transposase 2 70 1.9E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS03065 9f761a0b8cdac76addb6745d62474d42 87 Gene3D G3DSA:1.10.10.60 7 83 2.2E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03065 9f761a0b8cdac76addb6745d62474d42 87 PANTHER PTHR33609 1 87 6.1E-43 T 16-09-2016 BER92_RS03065 9f761a0b8cdac76addb6745d62474d42 87 SUPERFAMILY SSF46689 2 82 5.38E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13715 9f761a0b8cdac76addb6745d62474d42 87 Pfam PF01527 Transposase 2 70 1.9E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS13715 9f761a0b8cdac76addb6745d62474d42 87 Gene3D G3DSA:1.10.10.60 7 83 2.2E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13715 9f761a0b8cdac76addb6745d62474d42 87 PANTHER PTHR33609 1 87 6.1E-43 T 16-09-2016 BER92_RS13715 9f761a0b8cdac76addb6745d62474d42 87 SUPERFAMILY SSF46689 2 82 5.38E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS11795 9f761a0b8cdac76addb6745d62474d42 87 Pfam PF01527 Transposase 2 70 1.9E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS11795 9f761a0b8cdac76addb6745d62474d42 87 Gene3D G3DSA:1.10.10.60 7 83 2.2E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS11795 9f761a0b8cdac76addb6745d62474d42 87 PANTHER PTHR33609 1 87 6.1E-43 T 16-09-2016 BER92_RS11795 9f761a0b8cdac76addb6745d62474d42 87 SUPERFAMILY SSF46689 2 82 5.38E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10620 9f761a0b8cdac76addb6745d62474d42 87 Pfam PF01527 Transposase 2 70 1.9E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS10620 9f761a0b8cdac76addb6745d62474d42 87 Gene3D G3DSA:1.10.10.60 7 83 2.2E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10620 9f761a0b8cdac76addb6745d62474d42 87 PANTHER PTHR33609 1 87 6.1E-43 T 16-09-2016 BER92_RS10620 9f761a0b8cdac76addb6745d62474d42 87 SUPERFAMILY SSF46689 2 82 5.38E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16875 527abe1ffdbec4e3fefd36cd7e7eaa2d 326 Pfam PF01609 Transposase DDE domain 135 310 4.2E-34 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16875 527abe1ffdbec4e3fefd36cd7e7eaa2d 326 PANTHER PTHR35604 2 324 1.2E-255 T 16-09-2016 BER92_RS16875 527abe1ffdbec4e3fefd36cd7e7eaa2d 326 PANTHER PTHR35604:SF2 2 324 1.2E-255 T 16-09-2016 BER92_RS16875 527abe1ffdbec4e3fefd36cd7e7eaa2d 326 Pfam PF05598 Transposase domain (DUF772) 50 121 1.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS15800 8261333b6786b29c271e2aff34eceae8 171 Pfam PF07977 FabA-like domain 28 158 2.7E-49 T 16-09-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 BER92_RS15800 8261333b6786b29c271e2aff34eceae8 171 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 3 171 5.1E-93 T 16-09-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 BER92_RS15800 8261333b6786b29c271e2aff34eceae8 171 SUPERFAMILY SSF54637 2 169 5.06E-54 T 16-09-2016 IPR029069 HotDog domain BER92_RS15800 8261333b6786b29c271e2aff34eceae8 171 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 1 171 49.442 T 16-09-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 BER92_RS15800 8261333b6786b29c271e2aff34eceae8 171 Gene3D G3DSA:3.10.129.10 3 167 1.0E-54 T 16-09-2016 IPR029069 HotDog domain BER92_RS14775 559d9ff90eb27d2f544ac6729bed50c2 261 Gene3D G3DSA:1.10.10.10 135 235 6.0E-24 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS14775 559d9ff90eb27d2f544ac6729bed50c2 261 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 234 1.5E-18 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS14775 559d9ff90eb27d2f544ac6729bed50c2 261 SUPERFAMILY SSF52172 35 136 3.52E-7 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS14775 559d9ff90eb27d2f544ac6729bed50c2 261 SUPERFAMILY SSF46894 135 235 8.04E-23 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS14775 559d9ff90eb27d2f544ac6729bed50c2 261 Gene3D G3DSA:3.40.50.2300 37 123 2.1E-4 T 16-09-2016 BER92_RS14775 559d9ff90eb27d2f544ac6729bed50c2 261 PANTHER PTHR26402 82 235 8.2E-21 T 16-09-2016 BER92_RS14775 559d9ff90eb27d2f544ac6729bed50c2 261 PANTHER PTHR26402:SF292 82 235 8.2E-21 T 16-09-2016 BER92_RS14775 559d9ff90eb27d2f544ac6729bed50c2 261 SMART SM00862 157 234 5.8E-17 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 SUPERFAMILY SSF53271 248 473 1.61E-67 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 464 43.409 T 16-09-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 SUPERFAMILY SSF56235 2 255 1.37E-65 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 PANTHER PTHR11907 1 476 1.2E-241 T 16-09-2016 BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 462 1.3E-158 T 16-09-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 Gene3D G3DSA:3.40.50.2020 270 439 3.9E-41 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 PIRSF PIRSF000485 1 476 3.8E-154 T 16-09-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 Gene3D G3DSA:3.60.20.10 2 256 5.0E-59 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 Pfam PF13522 Glutamine amidotransferase domain 61 193 2.3E-15 T 16-09-2016 BER92_RS15360 56026cf316a3500fe493fe10e735ca40 488 PANTHER PTHR11907:SF0 1 476 1.2E-241 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PANTHER PTHR11922 2 518 1.8E-282 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 208 521 1.7E-149 T 16-09-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 9 200 5.9E-74 T 16-09-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 SUPERFAMILY SSF54810 401 521 1.7E-49 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 Pfam PF00117 Glutamine amidotransferase class-I 11 196 4.2E-39 T 16-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 50 64 2.7E-6 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 9 23 2.7E-6 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 80 96 2.7E-6 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 Gene3D G3DSA:3.30.300.10 397 521 4.9E-52 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PRINTS PR00097 Anthranilate synthase component II signature 80 91 3.5E-6 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PRINTS PR00097 Anthranilate synthase component II signature 53 62 3.5E-6 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PRINTS PR00097 Anthranilate synthase component II signature 173 186 3.5E-6 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PRINTS PR00096 Glutamine amidotransferase superfamily signature 53 62 1.5E-7 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PRINTS PR00096 Glutamine amidotransferase superfamily signature 80 91 1.5E-7 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PRINTS PR00096 Glutamine amidotransferase superfamily signature 173 186 1.5E-7 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 SUPERFAMILY SSF52402 193 415 6.17E-58 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 Gene3D G3DSA:3.40.50.880 4 218 9.0E-58 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 Gene3D G3DSA:3.40.50.620 219 395 5.9E-58 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 Pfam PF00958 GMP synthase C terminal domain 429 520 1.5E-42 T 16-09-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 PANTHER PTHR11922:SF2 2 518 1.8E-282 T 16-09-2016 BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 Pfam PF02540 NAD synthase 214 295 2.7E-8 T 16-09-2016 IPR022310 NAD/GMP synthase BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 SUPERFAMILY SSF52317 4 201 1.31E-54 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS09090 e1966fbf6d1dbfeea1ee6f4165ca5d2a 521 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 6 521 55.115 T 16-09-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 235 371 5.8E-68 T 16-09-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 PANTHER PTHR11964 1 369 9.6E-258 T 16-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 PANTHER PTHR11964 385 395 9.6E-258 T 16-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 3 101 1.1E-41 T 16-09-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 16-09-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 Gene3D G3DSA:3.30.300.10 136 235 1.8E-38 T 16-09-2016 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 Gene3D G3DSA:3.30.300.10 246 400 7.1E-70 T 16-09-2016 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 SUPERFAMILY SSF55973 110 234 2.51E-47 T 16-09-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 261 269 - T 16-09-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 PIRSF PIRSF000497 1 401 1.1E-169 T 16-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 SUPERFAMILY SSF55973 3 109 5.89E-46 T 16-09-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 400 55.911 T 16-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 233 7.7E-43 T 16-09-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 371 6.2E-182 T 16-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 Gene3D G3DSA:3.30.300.10 11 135 3.8E-48 T 16-09-2016 BER92_RS04580 e1c5f32d53b8c2c4754a21437ddc1696 403 SUPERFAMILY SSF55973 235 398 9.81E-67 T 16-09-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 Gene3D G3DSA:3.50.30.20 4 150 2.7E-58 T 16-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 325 336 5.0E-37 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 300 317 5.0E-37 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 252 266 5.0E-37 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 213 227 5.0E-37 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 283 299 5.0E-37 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 137 1.3E-51 T 16-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 SUPERFAMILY SSF52317 210 396 3.97E-60 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 394 1.6E-138 T 16-09-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 SUPERFAMILY SSF52021 4 155 1.31E-53 T 16-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 Pfam PF00117 Glutamine amidotransferase class-I 216 391 1.1E-44 T 16-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 SMART SM01097 3 139 5.5E-84 T 16-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PRINTS PR00096 Glutamine amidotransferase superfamily signature 368 381 3.6E-10 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PRINTS PR00096 Glutamine amidotransferase superfamily signature 255 264 3.6E-10 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PRINTS PR00096 Glutamine amidotransferase superfamily signature 283 294 3.6E-10 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PANTHER PTHR11405 206 398 1.7E-232 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 PANTHER PTHR11405 3 175 1.7E-232 T 16-09-2016 BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 Gene3D G3DSA:3.40.50.880 159 397 2.4E-78 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS09360 94a3abcd007768383d698ade85dcb794 398 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 397 47.654 T 16-09-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS14970 c04c07b56fc0e997084b5bdd63dd344f 224 PANTHER PTHR10242 8 224 2.5E-66 T 16-09-2016 BER92_RS14970 c04c07b56fc0e997084b5bdd63dd344f 224 Gene3D G3DSA:1.10.340.30 48 157 8.6E-24 T 16-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 BER92_RS14970 c04c07b56fc0e997084b5bdd63dd344f 224 Gene3D G3DSA:1.10.1670.10 158 212 2.0E-17 T 16-09-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal BER92_RS14970 c04c07b56fc0e997084b5bdd63dd344f 224 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 52 194 7.3E-13 T 16-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 BER92_RS14970 c04c07b56fc0e997084b5bdd63dd344f 224 SMART SM00478 55 210 1.9E-9 T 16-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 BER92_RS14970 c04c07b56fc0e997084b5bdd63dd344f 224 PANTHER PTHR10242:SF0 8 224 2.5E-66 T 16-09-2016 BER92_RS14970 c04c07b56fc0e997084b5bdd63dd344f 224 SUPERFAMILY SSF48150 39 208 5.93E-38 T 16-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 BER92_RS06230 3114e8aa094a35cbfe2fc8a84ad17064 399 Pfam PF00557 Metallopeptidase family M24 174 381 2.3E-49 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS06230 3114e8aa094a35cbfe2fc8a84ad17064 399 PANTHER PTHR10804 158 389 3.2E-59 T 16-09-2016 BER92_RS06230 3114e8aa094a35cbfe2fc8a84ad17064 399 Pfam PF01321 Creatinase/Prolidase N-terminal domain 35 166 1.9E-13 T 16-09-2016 IPR000587 Creatinase, N-terminal GO:0016787 BER92_RS06230 3114e8aa094a35cbfe2fc8a84ad17064 399 SUPERFAMILY SSF55920 165 390 1.96E-66 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS06230 3114e8aa094a35cbfe2fc8a84ad17064 399 PANTHER PTHR10804:SF86 158 389 3.2E-59 T 16-09-2016 BER92_RS06230 3114e8aa094a35cbfe2fc8a84ad17064 399 Gene3D G3DSA:3.90.230.10 165 389 1.1E-62 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS06230 3114e8aa094a35cbfe2fc8a84ad17064 399 SUPERFAMILY SSF53092 16 165 1.45E-23 T 16-09-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal BER92_RS06230 3114e8aa094a35cbfe2fc8a84ad17064 399 Gene3D G3DSA:3.40.350.10 16 164 9.3E-21 T 16-09-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 SUPERFAMILY SSF50447 207 303 3.34E-32 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 PANTHER PTHR23115:SF151 1 394 5.4E-254 T 16-09-2016 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 Gene3D G3DSA:3.40.50.300 4 213 6.1E-68 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 SUPERFAMILY SSF52540 6 221 4.57E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 PANTHER PTHR23115 1 394 5.4E-254 T 16-09-2016 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 SUPERFAMILY SSF50465 304 396 2.39E-35 T 16-09-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 149 7.4E-14 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.9E-56 T 16-09-2016 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 Gene3D G3DSA:2.40.30.10 214 300 8.2E-38 T 16-09-2016 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 16-09-2016 IPR031157 Tr-type G domain, conserved site BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 Gene3D G3DSA:2.40.30.10 302 395 5.9E-46 T 16-09-2016 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.1E-33 T 16-09-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.881 T 16-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 5.2E-20 T 16-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 BER92_RS05090 ff6588668bc851d6245e86a2cdc8f021 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 4.8E-225 T 16-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 SUPERFAMILY SSF50447 207 303 3.34E-32 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 PANTHER PTHR23115:SF151 1 394 5.4E-254 T 16-09-2016 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 Gene3D G3DSA:3.40.50.300 4 213 6.1E-68 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 SUPERFAMILY SSF52540 6 221 4.57E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 PANTHER PTHR23115 1 394 5.4E-254 T 16-09-2016 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 SUPERFAMILY SSF50465 304 396 2.39E-35 T 16-09-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 149 7.4E-14 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.9E-56 T 16-09-2016 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 Gene3D G3DSA:2.40.30.10 214 300 8.2E-38 T 16-09-2016 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 16-09-2016 IPR031157 Tr-type G domain, conserved site BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.9E-24 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 Gene3D G3DSA:2.40.30.10 302 395 5.9E-46 T 16-09-2016 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.1E-33 T 16-09-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.881 T 16-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 5.2E-20 T 16-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 BER92_RS05155 ff6588668bc851d6245e86a2cdc8f021 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 4.8E-225 T 16-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 SUPERFAMILY SSF64518 1 401 6.8E-74 T 16-09-2016 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 4 400 3.6E-109 T 16-09-2016 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 PANTHER PTHR30244 249 401 3.7E-91 T 16-09-2016 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 PANTHER PTHR30244 2 188 3.7E-91 T 16-09-2016 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 PANTHER PTHR30244:SF5 2 188 3.7E-91 T 16-09-2016 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 PANTHER PTHR30244:SF5 249 401 3.7E-91 T 16-09-2016 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 Pfam PF00700 Bacterial flagellin C-terminal helical region 318 399 4.0E-5 T 16-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 Gene3D G3DSA:1.20.1330.10 305 356 7.9E-20 T 16-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 Gene3D G3DSA:1.20.1330.10 58 171 7.9E-20 T 16-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BER92_RS10295 221b0b179b63a5809378cb2c4bae3f43 401 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.6E-19 T 16-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BER92_RS15400 9762eada8de96c9ccd0e25b7050dbf3d 487 PANTHER PTHR31047 26 485 6.5E-220 T 16-09-2016 BER92_RS15400 9762eada8de96c9ccd0e25b7050dbf3d 487 PIRSF PIRSF028846 50 486 4.3E-197 T 16-09-2016 IPR008313 Meiotically up-regulated gene 157 protein BER92_RS15400 9762eada8de96c9ccd0e25b7050dbf3d 487 SMART SM01149 72 475 7.2E-251 T 16-09-2016 IPR008313 Meiotically up-regulated gene 157 protein BER92_RS15400 9762eada8de96c9ccd0e25b7050dbf3d 487 PANTHER PTHR31047:SF0 26 485 6.5E-220 T 16-09-2016 BER92_RS15400 9762eada8de96c9ccd0e25b7050dbf3d 487 Pfam PF06824 Protein of unknown function (DUF1237) 73 474 8.2E-150 T 16-09-2016 IPR008313 Meiotically up-regulated gene 157 protein BER92_RS15400 9762eada8de96c9ccd0e25b7050dbf3d 487 SUPERFAMILY SSF48208 42 484 2.76E-169 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS15400 9762eada8de96c9ccd0e25b7050dbf3d 487 Gene3D G3DSA:1.50.10.10 56 484 3.0E-171 T 16-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 106 337 3.8E-57 T 16-09-2016 BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 SUPERFAMILY SSF51735 96 337 5.04E-73 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 Gene3D G3DSA:3.40.50.720 92 337 6.2E-76 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PANTHER PTHR24322:SF105 246 278 1.4E-61 T 16-09-2016 BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 226 234 3.6E-8 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 174 185 3.6E-8 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 246 265 3.6E-8 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 265 5.4E-34 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 267 284 5.4E-34 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 98 115 5.4E-34 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 236 5.4E-34 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 185 5.4E-34 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 302 322 5.4E-34 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 233 261 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PANTHER PTHR24322:SF105 101 230 1.4E-61 T 16-09-2016 BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PANTHER PTHR24322 101 230 1.4E-61 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14285 cc19209a660b5902e97138941bca87cd 342 PANTHER PTHR24322 246 278 1.4E-61 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 SMART SM00847 385 481 5.8E-14 T 16-09-2016 IPR007502 Helicase-associated domain GO:0004386 BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 PIRSF PIRSF005496 1 833 0.0 T 16-09-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 Gene3D G3DSA:3.40.50.300 205 342 2.9E-15 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 SMART SM00490 232 330 8.7E-16 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 6 832 0.0 T 16-09-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 SUPERFAMILY SSF52540 17 341 2.05E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 PANTHER PTHR18934 710 719 8.0E-141 T 16-09-2016 BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 PANTHER PTHR18934 7 449 8.0E-141 T 16-09-2016 BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 SMART SM00487 7 188 5.5E-13 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 Pfam PF04408 Helicase associated domain (HA2) 386 467 3.9E-17 T 16-09-2016 IPR007502 Helicase-associated domain GO:0004386 BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 Pfam PF00271 Helicase conserved C-terminal domain 210 329 4.7E-15 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 Pfam PF08482 ATP-dependent helicase C-terminal 682 819 9.4E-50 T 16-09-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal BER92_RS16525 a77084c7b66863294f31cc88df2d788a 833 Gene3D G3DSA:3.40.50.300 7 164 1.9E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01190 c321ec1ae01cdace02e47d7b33f4bd65 120 PANTHER PTHR22953:SF40 19 119 1.2E-14 T 16-09-2016 BER92_RS01190 c321ec1ae01cdace02e47d7b33f4bd65 120 PANTHER PTHR22953 19 119 1.2E-14 T 16-09-2016 BER92_RS11430 128116ce940b622f83c646cfa6b79805 128 Pfam PF01609 Transposase DDE domain 7 116 4.0E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11430 128116ce940b622f83c646cfa6b79805 128 PANTHER PTHR30007:SF0 4 122 1.7E-18 T 16-09-2016 BER92_RS11430 128116ce940b622f83c646cfa6b79805 128 PANTHER PTHR30007 4 122 1.7E-18 T 16-09-2016 BER92_RS14490 85d157957c3ce8e661e96d02c2da471d 173 Gene3D G3DSA:3.40.630.30 1 168 1.3E-38 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS14490 85d157957c3ce8e661e96d02c2da471d 173 PANTHER PTHR23091:SF258 1 168 2.7E-63 T 16-09-2016 BER92_RS14490 85d157957c3ce8e661e96d02c2da471d 173 Pfam PF13673 Acetyltransferase (GNAT) domain 31 151 1.7E-12 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS14490 85d157957c3ce8e661e96d02c2da471d 173 PANTHER PTHR23091 1 168 2.7E-63 T 16-09-2016 BER92_RS14490 85d157957c3ce8e661e96d02c2da471d 173 SUPERFAMILY SSF55729 2 157 8.83E-32 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 6 23 7.8E-5 T 16-09-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 6 690 2.9E-267 T 16-09-2016 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 SUPERFAMILY SSF53649 150 437 7.33E-5 T 16-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 PANTHER PTHR31956:SF6 293 532 1.6E-293 T 16-09-2016 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 PANTHER PTHR31956:SF6 6 206 1.6E-293 T 16-09-2016 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 PANTHER PTHR31956:SF6 224 275 1.6E-293 T 16-09-2016 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 PANTHER PTHR31956 293 532 1.6E-293 T 16-09-2016 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 PANTHER PTHR31956 6 206 1.6E-293 T 16-09-2016 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 PANTHER PTHR31956 224 275 1.6E-293 T 16-09-2016 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 Pfam PF04185 Phosphoesterase family 45 432 1.7E-108 T 16-09-2016 IPR007312 Phosphoesterase GO:0016788 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 Pfam PF05506 Domain of unknown function (DUF756) 501 586 9.8E-21 T 16-09-2016 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 BER92_RS02295 cf0d12b05f48cee068f439b42f6eb935 693 Pfam PF05506 Domain of unknown function (DUF756) 607 677 2.9E-10 T 16-09-2016 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 BER92_RS07400 ce2979e4bc2cd4575760399dca418bfa 199 PANTHER PTHR33508:SF4 1 199 1.2E-94 T 16-09-2016 BER92_RS07400 ce2979e4bc2cd4575760399dca418bfa 199 PANTHER PTHR33508 1 199 1.2E-94 T 16-09-2016 BER92_RS07400 ce2979e4bc2cd4575760399dca418bfa 199 Pfam PF01914 MarC family integral membrane protein 3 191 9.4E-48 T 16-09-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 BER92_RS08400 f4d3b5c30aae5ae15426dc4de7c2b42d 709 Pfam PF13515 Fusaric acid resistance protein-like 384 507 2.1E-16 T 16-09-2016 BER92_RS08400 f4d3b5c30aae5ae15426dc4de7c2b42d 709 PANTHER PTHR30509 10 636 2.3E-113 T 16-09-2016 BER92_RS08400 f4d3b5c30aae5ae15426dc4de7c2b42d 709 Pfam PF12805 FUSC-like inner membrane protein yccS 67 179 1.2E-6 T 16-09-2016 IPR032692 Integral membrane protein YccS, N-terminal BER92_RS08400 f4d3b5c30aae5ae15426dc4de7c2b42d 709 PANTHER PTHR30509:SF9 10 636 2.3E-113 T 16-09-2016 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 PANTHER PTHR22939:SF101 44 478 1.2E-192 T 16-09-2016 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 61 473 3.1E-126 T 16-09-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 Pfam PF13180 PDZ domain 290 379 2.7E-12 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 PANTHER PTHR22939 44 478 1.2E-192 T 16-09-2016 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 Gene3D G3DSA:2.30.42.10 411 473 2.8E-7 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 SUPERFAMILY SSF50156 397 474 7.89E-7 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 Gene3D G3DSA:2.30.42.10 290 383 2.0E-25 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 SUPERFAMILY SSF50494 59 284 2.74E-62 T 16-09-2016 IPR009003 Peptidase S1, PA clan BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 Pfam PF13365 Trypsin-like peptidase domain 111 246 5.7E-32 T 16-09-2016 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 Gene3D G3DSA:2.40.10.10 177 289 2.4E-43 T 16-09-2016 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 SMART SM00228 394 470 0.68 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 SMART SM00228 288 370 5.7E-13 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 Gene3D G3DSA:2.40.10.10 53 176 5.3E-32 T 16-09-2016 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 SUPERFAMILY SSF50156 287 381 2.1E-20 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 PRINTS PR00834 HtrA/DegQ protease family signature 328 340 1.5E-51 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 PRINTS PR00834 HtrA/DegQ protease family signature 239 256 1.5E-51 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 PRINTS PR00834 HtrA/DegQ protease family signature 142 162 1.5E-51 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 PRINTS PR00834 HtrA/DegQ protease family signature 217 234 1.5E-51 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 PRINTS PR00834 HtrA/DegQ protease family signature 182 206 1.5E-51 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS01430 1f25ccf78a6d0086a8c311b90d6ffe79 478 PRINTS PR00834 HtrA/DegQ protease family signature 121 133 1.5E-51 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 PANTHER PTHR10795 16 62 1.1E-86 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 SUPERFAMILY SSF52743 256 511 2.88E-74 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 SUPERFAMILY SSF52743 176 227 2.88E-74 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 Gene3D G3DSA:3.40.50.200 121 513 4.0E-83 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 PRINTS PR00723 Subtilisin serine protease family (S8) signature 191 210 8.2E-21 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 PRINTS PR00723 Subtilisin serine protease family (S8) signature 259 272 8.2E-21 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 PRINTS PR00723 Subtilisin serine protease family (S8) signature 444 460 8.2E-21 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 PANTHER PTHR10795 88 242 1.1E-86 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 PANTHER PTHR10795:SF419 88 242 1.1E-86 T 16-09-2016 BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 196 207 - T 16-09-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 PANTHER PTHR10795 262 512 1.1E-86 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 549 612 9.5E-13 T 16-09-2016 IPR007280 Peptidase, C-terminal, archaeal/bacterial BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 PANTHER PTHR10795:SF419 262 512 1.1E-86 T 16-09-2016 BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 Pfam PF00082 Subtilase family 191 488 2.5E-46 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 445 455 - T 16-09-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site BER92_RS04350 ddb6ba7f011f36a8966f51cf21646ded 628 PANTHER PTHR10795:SF419 16 62 1.1E-86 T 16-09-2016 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 SUPERFAMILY SSF48557 25 402 1.3E-84 T 16-09-2016 IPR008948 L-Aspartase-like GO:0003824 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PRINTS PR00149 Fumarate lyase superfamily signature 150 168 2.0E-13 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PRINTS PR00149 Fumarate lyase superfamily signature 105 123 2.0E-13 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PRINTS PR00149 Fumarate lyase superfamily signature 279 295 2.0E-13 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 Hamap MF_00006 Argininosuccinate lyase [argH]. 4 429 29.468 T 16-09-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PRINTS PR00145 Argininosuccinate lyase family signature 145 165 1.8E-30 T 16-09-2016 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PRINTS PR00145 Argininosuccinate lyase family signature 196 212 1.8E-30 T 16-09-2016 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PRINTS PR00145 Argininosuccinate lyase family signature 279 295 1.8E-30 T 16-09-2016 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PRINTS PR00145 Argininosuccinate lyase family signature 313 332 1.8E-30 T 16-09-2016 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PRINTS PR00145 Argininosuccinate lyase family signature 104 126 1.8E-30 T 16-09-2016 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 Gene3D G3DSA:1.20.200.10 110 388 3.0E-59 T 16-09-2016 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 Gene3D G3DSA:1.10.275.10 21 109 8.3E-25 T 16-09-2016 IPR024083 Fumarase/histidase, N-terminal BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PANTHER PTHR11444:SF3 29 392 6.5E-108 T 16-09-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 Pfam PF00206 Lyase 34 301 6.8E-45 T 16-09-2016 IPR022761 Fumarate lyase, N-terminal BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 PANTHER PTHR11444 29 392 6.5E-108 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS11860 0b6c00923c74770cda892d2f36385229 431 ProSitePatterns PS00163 Fumarate lyases signature. 279 288 - T 16-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 44 766 5.6E-203 T 16-09-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 PANTHER PTHR12143 423 781 1.7E-203 T 16-09-2016 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 PANTHER PTHR12143 45 406 1.7E-203 T 16-09-2016 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 Gene3D G3DSA:1.20.1050.60 382 472 3.3E-27 T 16-09-2016 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 Gene3D G3DSA:1.20.1610.10 473 628 6.0E-61 T 16-09-2016 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 PANTHER PTHR12143:SF22 45 406 1.7E-203 T 16-09-2016 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 Gene3D G3DSA:3.30.2080.10 629 773 1.2E-62 T 16-09-2016 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 SUPERFAMILY SSF48208 296 725 8.16E-27 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 Pfam PF07971 Glycosyl hydrolase family 92 278 762 1.3E-165 T 16-09-2016 IPR012939 Glycosyl hydrolase family 92 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 Gene3D G3DSA:2.70.98.10 45 357 1.4E-103 T 16-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 BER92_RS15405 11cc61d1476f9f8c3bf53479f3ff5edd 781 PANTHER PTHR12143:SF22 423 781 1.7E-203 T 16-09-2016 BER92_RS18125 6271a34a5da7e0cd5014d967a43e3b3b 94 PANTHER PTHR34702 1 94 6.4E-20 T 16-09-2016 BER92_RS18125 6271a34a5da7e0cd5014d967a43e3b3b 94 PANTHER PTHR34702:SF1 1 94 6.4E-20 T 16-09-2016 BER92_RS18125 6271a34a5da7e0cd5014d967a43e3b3b 94 PIRSF PIRSF028784 4 94 1.3E-26 T 16-09-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 BER92_RS18125 6271a34a5da7e0cd5014d967a43e3b3b 94 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 36 87 8.8E-20 T 16-09-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 Gene3D G3DSA:1.10.530.10 92 242 8.3E-33 T 16-09-2016 BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 PANTHER PTHR21666:SF206 95 326 1.4E-38 T 16-09-2016 BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 SMART SM00257 346 390 3.5E-8 T 16-09-2016 IPR018392 LysM domain BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 Pfam PF01476 LysM domain 347 387 1.5E-9 T 16-09-2016 IPR018392 LysM domain BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 Pfam PF01464 Transglycosylase SLT domain 103 204 2.9E-21 T 16-09-2016 IPR008258 Transglycosylase SLT domain 1 BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 SUPERFAMILY SSF53955 91 240 9.14E-31 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 PANTHER PTHR21666 95 326 1.4E-38 T 16-09-2016 BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 PANTHER PTHR21666 347 388 1.4E-38 T 16-09-2016 BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 SUPERFAMILY SSF54106 345 388 5.1E-9 T 16-09-2016 IPR018392 LysM domain BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 Gene3D G3DSA:3.10.350.10 344 387 3.0E-13 T 16-09-2016 IPR018392 LysM domain BER92_RS14170 00140e2284148e9c2dbfac710b8200d1 393 PANTHER PTHR21666:SF206 347 388 1.4E-38 T 16-09-2016 BER92_RS04360 f5d1982806491f53a8570d043421802d 405 Pfam PF00482 Type II secretion system (T2SS), protein F 71 194 1.8E-30 T 16-09-2016 IPR018076 Type II secretion system F domain BER92_RS04360 f5d1982806491f53a8570d043421802d 405 Pfam PF00482 Type II secretion system (T2SS), protein F 275 396 8.4E-26 T 16-09-2016 IPR018076 Type II secretion system F domain BER92_RS04360 f5d1982806491f53a8570d043421802d 405 PANTHER PTHR30012 2 405 2.6E-151 T 16-09-2016 BER92_RS04360 f5d1982806491f53a8570d043421802d 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 8.2E-23 T 16-09-2016 IPR003004 GspF/PilC family BER92_RS04360 f5d1982806491f53a8570d043421802d 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 8.2E-23 T 16-09-2016 IPR003004 GspF/PilC family BER92_RS04360 f5d1982806491f53a8570d043421802d 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 8.2E-23 T 16-09-2016 IPR003004 GspF/PilC family BER92_RS04360 f5d1982806491f53a8570d043421802d 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 8.2E-23 T 16-09-2016 IPR003004 GspF/PilC family BER92_RS04360 f5d1982806491f53a8570d043421802d 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 16-09-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 BER92_RS04360 f5d1982806491f53a8570d043421802d 405 PANTHER PTHR30012:SF0 2 405 2.6E-151 T 16-09-2016 BER92_RS10360 5758bf4eff1abdffbd74821e6a8ffaee 123 Pfam PF02049 Flagellar hook-basal body complex protein FliE 42 122 4.5E-28 T 16-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BER92_RS10360 5758bf4eff1abdffbd74821e6a8ffaee 123 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 123 16.403 T 16-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BER92_RS10360 5758bf4eff1abdffbd74821e6a8ffaee 123 PANTHER PTHR34653 9 123 2.0E-27 T 16-09-2016 BER92_RS10360 5758bf4eff1abdffbd74821e6a8ffaee 123 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 52 68 2.5E-11 T 16-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BER92_RS10360 5758bf4eff1abdffbd74821e6a8ffaee 123 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 87 103 2.5E-11 T 16-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BER92_RS10360 5758bf4eff1abdffbd74821e6a8ffaee 123 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 108 121 2.5E-11 T 16-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BER92_RS10360 5758bf4eff1abdffbd74821e6a8ffaee 123 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 47 121 3.8E-18 T 16-09-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BER92_RS10375 ee794dbb53ea3452ab6a3365b82f6874 206 Pfam PF02108 Flagellar assembly protein FliH 73 193 2.3E-20 T 16-09-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE BER92_RS10375 ee794dbb53ea3452ab6a3365b82f6874 206 PANTHER PTHR34982 1 205 2.2E-44 T 16-09-2016 BER92_RS10375 ee794dbb53ea3452ab6a3365b82f6874 206 PANTHER PTHR34982:SF1 1 205 2.2E-44 T 16-09-2016 BER92_RS11190 5e0d80ab4346a9e1d24cf2c741be3780 210 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 9 205 26.755 T 16-09-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 BER92_RS11190 5e0d80ab4346a9e1d24cf2c741be3780 210 Pfam PF01728 FtsJ-like methyltransferase 30 204 1.5E-48 T 16-09-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 BER92_RS11190 5e0d80ab4346a9e1d24cf2c741be3780 210 Gene3D G3DSA:3.40.50.150 4 206 5.0E-66 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS11190 5e0d80ab4346a9e1d24cf2c741be3780 210 SUPERFAMILY SSF53335 28 204 3.44E-38 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS11190 5e0d80ab4346a9e1d24cf2c741be3780 210 PANTHER PTHR10920:SF20 1 210 3.3E-116 T 16-09-2016 BER92_RS11190 5e0d80ab4346a9e1d24cf2c741be3780 210 PANTHER PTHR10920 1 210 3.3E-116 T 16-09-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 BER92_RS11190 5e0d80ab4346a9e1d24cf2c741be3780 210 PIRSF PIRSF005461 1 210 8.9E-69 T 16-09-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 BER92_RS04305 46b95a74f23ef150d575eac1210c5253 360 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 4 349 6.6E-113 T 16-09-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 BER92_RS04305 46b95a74f23ef150d575eac1210c5253 360 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 348 2.6E-68 T 16-09-2016 IPR005495 Permease LptG/LptF-related GO:0016021 BER92_RS04305 46b95a74f23ef150d575eac1210c5253 360 PANTHER PTHR33529:SF2 1 359 1.2E-104 T 16-09-2016 BER92_RS04305 46b95a74f23ef150d575eac1210c5253 360 PANTHER PTHR33529 1 359 1.2E-104 T 16-09-2016 BER92_RS08550 7c1817b72e6b677244cdcbbcdc5549cb 272 Pfam PF16697 Inner membrane component of T3SS, cytoplasmic domain 126 201 1.3E-15 T 16-09-2016 IPR032030 YscD, cytoplasmic domain BER92_RS08550 7c1817b72e6b677244cdcbbcdc5549cb 272 Gene3D G3DSA:2.60.200.20 120 211 6.3E-18 T 16-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 BER92_RS08550 7c1817b72e6b677244cdcbbcdc5549cb 272 SUPERFAMILY SSF49879 118 222 1.47E-16 T 16-09-2016 IPR008984 SMAD/FHA domain GO:0005515 BER92_RS08550 7c1817b72e6b677244cdcbbcdc5549cb 272 SMART SM00240 140 190 1.0E-5 T 16-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 BER92_RS19320 cfca2dc060c559cafd95c643b40e2c16 148 SUPERFAMILY SSF54211 10 116 2.78E-24 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS19320 cfca2dc060c559cafd95c643b40e2c16 148 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 59 73 - T 16-09-2016 IPR020539 Ribonuclease P, conserved site GO:0004526 BER92_RS19320 cfca2dc060c559cafd95c643b40e2c16 148 Pfam PF00825 Ribonuclease P 10 115 8.2E-25 T 16-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BER92_RS19320 cfca2dc060c559cafd95c643b40e2c16 148 PANTHER PTHR33992 6 136 1.2E-37 T 16-09-2016 BER92_RS19320 cfca2dc060c559cafd95c643b40e2c16 148 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 62 108 7.0E-20 T 16-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BER92_RS19320 cfca2dc060c559cafd95c643b40e2c16 148 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 14 116 1.0E-18 T 16-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BER92_RS19320 cfca2dc060c559cafd95c643b40e2c16 148 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 10 118 17.649 T 16-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BER92_RS19320 cfca2dc060c559cafd95c643b40e2c16 148 Gene3D G3DSA:3.30.230.10 9 117 6.6E-28 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 PANTHER PTHR26402 139 249 1.4E-22 T 16-09-2016 BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 SUPERFAMILY SSF52172 17 136 2.78E-11 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 Gene3D G3DSA:3.30.70.270 272 361 5.5E-29 T 16-09-2016 BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 SMART SM00267 259 362 1.1E-5 T 16-09-2016 IPR000160 GGDEF domain BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 SUPERFAMILY SSF55073 275 361 3.22E-25 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 SMART SM00448 139 253 7.4E-24 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 SMART SM00448 17 133 0.03 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 Gene3D G3DSA:3.40.50.2300 17 127 1.6E-10 T 16-09-2016 BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 Gene3D G3DSA:3.40.50.2300 137 258 1.9E-27 T 16-09-2016 BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 Pfam PF00990 Diguanylate cyclase, GGDEF domain 270 361 5.6E-27 T 16-09-2016 IPR000160 GGDEF domain BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 266 361 1.3E-29 T 16-09-2016 IPR000160 GGDEF domain BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 SUPERFAMILY SSF52172 140 270 1.85E-28 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS07505 f4ae03e4187114c4096cce4a576b0f9d 362 Pfam PF00072 Response regulator receiver domain 142 250 2.1E-18 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS06620 0f1a9dc44562e019c0483ca24b5d7019 259 Gene3D G3DSA:2.40.30.10 4 98 3.8E-31 T 16-09-2016 BER92_RS06620 0f1a9dc44562e019c0483ca24b5d7019 259 SUPERFAMILY SSF52343 104 257 2.23E-39 T 16-09-2016 BER92_RS06620 0f1a9dc44562e019c0483ca24b5d7019 259 Gene3D G3DSA:3.40.50.80 99 258 1.0E-43 T 16-09-2016 BER92_RS06620 0f1a9dc44562e019c0483ca24b5d7019 259 Pfam PF00970 Oxidoreductase FAD-binding domain 19 99 3.8E-7 T 16-09-2016 IPR008333 Oxidoreductase, FAD-binding domain BER92_RS06620 0f1a9dc44562e019c0483ca24b5d7019 259 Pfam PF00175 Oxidoreductase NAD-binding domain 113 229 3.1E-7 T 16-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BER92_RS06620 0f1a9dc44562e019c0483ca24b5d7019 259 SUPERFAMILY SSF63380 8 100 5.2E-25 T 16-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 BER92_RS06620 0f1a9dc44562e019c0483ca24b5d7019 259 PANTHER PTHR19370 5 245 1.7E-124 T 16-09-2016 BER92_RS06620 0f1a9dc44562e019c0483ca24b5d7019 259 PANTHER PTHR19370:SF98 5 245 1.7E-124 T 16-09-2016 BER92_RS14645 f8cdddc2a7dc080743da13adf8884691 134 PANTHER PTHR40043 2 134 1.9E-53 T 16-09-2016 BER92_RS14645 f8cdddc2a7dc080743da13adf8884691 134 PANTHER PTHR40043:SF1 2 134 1.9E-53 T 16-09-2016 BER92_RS14645 f8cdddc2a7dc080743da13adf8884691 134 Pfam PF03994 Domain of Unknown Function (DUF350) 15 68 2.7E-14 T 16-09-2016 IPR007140 Protein of unknown function DUF350 BER92_RS14645 f8cdddc2a7dc080743da13adf8884691 134 Pfam PF03994 Domain of Unknown Function (DUF350) 80 132 1.5E-9 T 16-09-2016 IPR007140 Protein of unknown function DUF350 BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 328 3.9E-36 T 16-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 Gene3D G3DSA:3.30.70.260 326 412 1.1E-24 T 16-09-2016 BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 156 183 - T 16-09-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 Gene3D G3DSA:3.40.50.720 122 299 1.6E-61 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 SUPERFAMILY SSF55021 334 412 3.59E-14 T 16-09-2016 BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 PANTHER PTHR10996 4 371 2.7E-231 T 16-09-2016 BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 Gene3D G3DSA:3.40.50.720 11 121 2.4E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 121 296 7.9E-51 T 16-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 SUPERFAMILY SSF51735 110 297 1.79E-55 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 PANTHER PTHR10996:SF18 4 371 2.7E-231 T 16-09-2016 IPR029015 D-3-phosphoglycerate dehydrogenase, type2 GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 202 224 - T 16-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BER92_RS09290 69abe0de1ad95b07d3b5b0dd993accb0 413 SUPERFAMILY SSF52283 10 137 1.96E-46 T 16-09-2016 BER92_RS07020 72a483184854656862c689164ca85c9d 184 Gene3D G3DSA:3.40.50.2020 10 184 3.1E-47 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS07020 72a483184854656862c689164ca85c9d 184 PANTHER PTHR22573:SF56 16 183 3.4E-46 T 16-09-2016 BER92_RS07020 72a483184854656862c689164ca85c9d 184 Pfam PF00156 Phosphoribosyl transferase domain 15 167 3.6E-21 T 16-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 BER92_RS07020 72a483184854656862c689164ca85c9d 184 SUPERFAMILY SSF53271 6 183 1.57E-44 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS07020 72a483184854656862c689164ca85c9d 184 PANTHER PTHR22573 16 183 3.4E-46 T 16-09-2016 BER92_RS02130 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 PANTHER PTHR33215 1 89 1.7E-23 T 16-09-2016 BER92_RS02130 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 SUPERFAMILY SSF46689 1 89 4.84E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS02130 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 Pfam PF01527 Transposase 4 70 8.4E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS02130 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 Gene3D G3DSA:1.10.10.60 7 86 5.7E-20 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS02130 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 PANTHER PTHR33215:SF1 1 89 1.7E-23 T 16-09-2016 BER92_RS17765 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 PANTHER PTHR33215 1 89 1.7E-23 T 16-09-2016 BER92_RS17765 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 SUPERFAMILY SSF46689 1 89 4.84E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS17765 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 Pfam PF01527 Transposase 4 70 8.4E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS17765 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 Gene3D G3DSA:1.10.10.60 7 86 5.7E-20 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS17765 1beee67dfee8ecbbb9bbf542a7ed2ddb 90 PANTHER PTHR33215:SF1 1 89 1.7E-23 T 16-09-2016 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 Pfam PF13192 Thioredoxin domain 125 195 4.4E-9 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 Gene3D G3DSA:3.50.50.60 369 515 1.6E-37 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 Gene3D G3DSA:3.40.30.10 1 94 6.0E-31 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 374 1.8E-40 T 16-09-2016 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 215 234 1.8E-40 T 16-09-2016 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 467 489 1.8E-40 T 16-09-2016 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 441 457 1.8E-40 T 16-09-2016 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 314 332 1.8E-40 T 16-09-2016 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 SUPERFAMILY SSF52833 105 196 1.17E-22 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 214 503 1.8E-44 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 443 464 1.7E-64 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 261 1.7E-64 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 214 236 1.7E-64 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 337 349 1.7E-64 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 352 376 1.7E-64 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 404 420 1.7E-64 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 276 1.7E-64 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 315 323 1.7E-64 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 477 495 1.7E-64 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PANTHER PTHR22912:SF107 199 513 1.4E-210 T 16-09-2016 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 SUPERFAMILY SSF51905 207 514 2.09E-53 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PANTHER PTHR22912 199 513 1.4E-210 T 16-09-2016 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 516 5.9E-241 T 16-09-2016 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 PIRSF PIRSF000238 1 520 2.5E-268 T 16-09-2016 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 344 364 - T 16-09-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 Gene3D G3DSA:3.40.30.10 105 197 4.4E-35 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 Gene3D G3DSA:3.40.50.720 211 368 2.2E-27 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS04880 076e050f78172019296486d1aed5cfb0 530 SUPERFAMILY SSF52833 1 101 2.12E-29 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 SMART SM00388 805 870 5.0E-21 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 SUPERFAMILY SSF55874 859 1027 1.7E-43 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Pfam PF00512 His Kinase A (phospho-acceptor) domain 805 870 1.2E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PANTHER PTHR24423 783 1168 8.8E-164 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PANTHER PTHR24423 1 120 8.8E-164 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 SUPERFAMILY SSF63829 356 500 5.67E-12 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 SUPERFAMILY SSF63829 535 584 5.67E-12 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Gene3D G3DSA:3.30.565.10 871 1030 3.1E-44 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Pfam PF07495 Y_Y_Y domain 689 749 2.4E-13 T 16-09-2016 IPR011123 Two component regulator three Y BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Gene3D G3DSA:2.120.10.30 40 109 7.5E-4 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Gene3D G3DSA:2.120.10.30 138 248 4.5E-7 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Pfam PF00072 Response regulator receiver domain 1051 1160 6.3E-18 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 SMART SM00448 1049 1160 3.1E-27 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 SUPERFAMILY SSF63829 102 281 1.63E-7 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Gene3D G3DSA:3.40.50.2300 1048 1166 9.2E-28 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 SUPERFAMILY SSF52172 1047 1164 4.27E-30 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Gene3D G3DSA:1.10.287.130 799 866 2.7E-13 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Pfam PF07494 Two component regulator propeller 39 62 0.013 T 16-09-2016 IPR011110 Two component regulator propeller BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Pfam PF07494 Two component regulator propeller 174 195 0.0016 T 16-09-2016 IPR011110 Two component regulator propeller BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PANTHER PTHR24423 411 448 8.8E-164 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 SMART SM00387 917 1029 2.6E-35 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Gene3D G3DSA:2.120.10.30 359 491 6.0E-8 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PANTHER PTHR24423:SF548 411 448 8.8E-164 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PANTHER PTHR24423:SF548 204 273 8.8E-164 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PANTHER PTHR24423:SF548 783 1168 8.8E-164 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PANTHER PTHR24423:SF548 1 120 8.8E-164 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 917 1028 4.7E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 SUPERFAMILY SSF47384 794 871 1.84E-17 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 Gene3D G3DSA:2.120.10.30 492 583 9.0E-4 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PANTHER PTHR24423 204 273 8.8E-164 T 16-09-2016 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PRINTS PR00344 Bacterial sensor protein C-terminal signature 971 981 3.3E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PRINTS PR00344 Bacterial sensor protein C-terminal signature 953 967 3.3E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1013 1026 3.3E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14715 2c1ae008ff6b2beebddd05aa9a593cdf 1176 PRINTS PR00344 Bacterial sensor protein C-terminal signature 989 1007 3.3E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 SUPERFAMILY SSF48452 383 551 1.56E-26 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 Pfam PF14559 Tetratricopeptide repeat 223 285 3.7E-6 T 16-09-2016 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 SMART SM00028 415 448 1.8 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 SMART SM00028 381 414 220.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 SMART SM00028 177 210 91.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 SMART SM00028 449 483 150.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 SMART SM00028 517 550 2.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 PANTHER PTHR23083 174 551 2.1E-51 T 16-09-2016 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 PANTHER PTHR23083:SF195 174 551 2.1E-51 T 16-09-2016 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 SUPERFAMILY SSF48452 161 363 6.77E-11 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 Gene3D G3DSA:1.25.40.10 47 223 1.9E-4 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 Gene3D G3DSA:1.25.40.10 277 551 1.4E-35 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 PANTHER PTHR23083:SF195 45 100 2.1E-51 T 16-09-2016 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 Pfam PF13432 Tetratricopeptide repeat 492 550 0.006 T 16-09-2016 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 Pfam PF13432 Tetratricopeptide repeat 423 484 3.3E-5 T 16-09-2016 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 Gene3D G3DSA:1.25.40.10 224 276 1.2E-7 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS05035 4769fabccbc0c5ce385182cea88fb4a1 562 PANTHER PTHR23083 45 100 2.1E-51 T 16-09-2016 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 TIGRFAM TIGR01312 XylB: xylulokinase 5 487 1.3E-155 T 16-09-2016 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 258 441 4.6E-29 T 16-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 PIRSF PIRSF000538 1 496 1.3E-107 T 16-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 SUPERFAMILY SSF53067 252 491 8.42E-51 T 16-09-2016 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 SUPERFAMILY SSF53067 1 248 1.28E-55 T 16-09-2016 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 PANTHER PTHR10196 1 486 1.6E-167 T 16-09-2016 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 Gene3D G3DSA:3.30.420.40 1 249 1.9E-49 T 16-09-2016 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 Gene3D G3DSA:3.30.420.40 252 489 6.2E-41 T 16-09-2016 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 248 6.9E-57 T 16-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 PANTHER PTHR10196:SF67 1 486 1.6E-167 T 16-09-2016 BER92_RS10870 973cb3416abf93fefdde6f794aaca6e5 497 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 352 373 - T 16-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Gene3D G3DSA:3.40.50.140 1 136 3.2E-43 T 16-09-2016 IPR006171 Toprim domain BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 SMART SM00436 108 196 9.8E-45 T 16-09-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Pfam PF01751 Toprim domain 5 117 8.4E-26 T 16-09-2016 IPR006171 Toprim domain BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 681 52.985 T 16-09-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 SMART SM00493 3 103 2.2E-32 T 16-09-2016 IPR006171 Toprim domain BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Pfam PF01131 DNA topoisomerase 133 562 6.2E-129 T 16-09-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 SMART SM00437 252 525 4.4E-113 T 16-09-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Gene3D G3DSA:2.70.20.10 190 325 3.7E-31 T 16-09-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Gene3D G3DSA:2.70.20.10 328 464 5.7E-37 T 16-09-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 488 502 6.8E-37 T 16-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 303 312 6.8E-37 T 16-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 166 184 6.8E-37 T 16-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 6.8E-37 T 16-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 381 397 6.8E-37 T 16-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 289 312 - T 16-09-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 618 1.2E-222 T 16-09-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 PANTHER PTHR11390:SF27 1 578 1.1E-302 T 16-09-2016 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Gene3D G3DSA:1.10.460.10 465 576 1.3E-59 T 16-09-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Gene3D G3DSA:1.10.460.10 137 189 1.3E-59 T 16-09-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Pfam PF13368 Topoisomerase C-terminal repeat 657 704 1.2E-13 T 16-09-2016 IPR025589 Topoisomerase C-terminal repeat BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Pfam PF13368 Topoisomerase C-terminal repeat 594 654 8.4E-14 T 16-09-2016 IPR025589 Topoisomerase C-terminal repeat BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 Pfam PF13368 Topoisomerase C-terminal repeat 714 759 1.3E-12 T 16-09-2016 IPR025589 Topoisomerase C-terminal repeat BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 SUPERFAMILY SSF56712 3 576 1.01E-185 T 16-09-2016 IPR023405 DNA topoisomerase, type IA, core domain BER92_RS01020 92ff0d8121f0b8edc2749f6136bd13f9 830 PANTHER PTHR11390 1 578 1.1E-302 T 16-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 BER92_RS06280 d5c1d6ddc7649ff1dea45d9c7384bd7a 522 Pfam PF00082 Subtilase family 267 464 1.8E-8 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS06280 d5c1d6ddc7649ff1dea45d9c7384bd7a 522 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 447 457 - T 16-09-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site BER92_RS06280 d5c1d6ddc7649ff1dea45d9c7384bd7a 522 PANTHER PTHR14218 59 519 2.1E-62 T 16-09-2016 BER92_RS06280 d5c1d6ddc7649ff1dea45d9c7384bd7a 522 PANTHER PTHR14218:SF15 59 519 2.1E-62 T 16-09-2016 BER92_RS06280 d5c1d6ddc7649ff1dea45d9c7384bd7a 522 Gene3D G3DSA:3.40.50.200 185 520 6.8E-93 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS06280 d5c1d6ddc7649ff1dea45d9c7384bd7a 522 SUPERFAMILY SSF54897 4 166 1.87E-39 T 16-09-2016 IPR009020 Proteinase inhibitor, propeptide BER92_RS06280 d5c1d6ddc7649ff1dea45d9c7384bd7a 522 Pfam PF09286 Pro-kumamolisin, activation domain 19 149 6.2E-16 T 16-09-2016 IPR015366 Peptidase S53, propeptide GO:0008236 BER92_RS06280 d5c1d6ddc7649ff1dea45d9c7384bd7a 522 SMART SM00944 13 151 2.5E-31 T 16-09-2016 IPR015366 Peptidase S53, propeptide GO:0008236 BER92_RS06280 d5c1d6ddc7649ff1dea45d9c7384bd7a 522 SUPERFAMILY SSF52743 183 520 5.5E-65 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS03020 22880c8beb78b16a4c9779e347277aa1 89 SUPERFAMILY SSF51338 1 65 3.24E-8 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS03020 22880c8beb78b16a4c9779e347277aa1 89 Gene3D G3DSA:2.30.40.10 1 78 2.0E-17 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Pfam PF01568 Molydopterin dinucleotide binding domain 830 935 2.1E-20 T 16-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 PIRSF PIRSF036643 3 972 0.0 T 16-09-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 PANTHER PTHR11615 260 959 5.5E-290 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 263 315 1.7E-16 T 16-09-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 86 122 1.4E-5 T 16-09-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Gene3D G3DSA:2.20.25.90 263 317 9.4E-21 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Gene3D G3DSA:2.40.40.20 800 940 5.3E-35 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Pfam PF00384 Molybdopterin oxidoreductase 319 745 2.1E-74 T 16-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 SUPERFAMILY SSF54292 9 75 7.61E-9 T 16-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 267 938 7.7E-233 T 16-09-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 SUPERFAMILY SSF54862 80 213 6.28E-26 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 SMART SM00929 86 127 5.8E-7 T 16-09-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Pfam PF00037 4Fe-4S binding domain 144 160 3.2E-5 T 16-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 SUPERFAMILY SSF53706 256 782 4.58E-185 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 SMART SM00926 262 316 6.9E-16 T 16-09-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 PANTHER PTHR11615:SF112 8 56 5.5E-290 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Gene3D G3DSA:3.30.70.20 135 208 1.4E-15 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 9 78 1.4E-6 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 SUPERFAMILY SSF50692 794 940 1.9E-37 T 16-09-2016 IPR009010 Aspartate decarboxylase-like domain BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 - T 16-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 PANTHER PTHR11615 8 56 5.5E-290 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Gene3D G3DSA:3.40.228.10 395 577 5.0E-56 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 267 284 - T 16-09-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 PANTHER PTHR11615:SF112 260 959 5.5E-290 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Gene3D G3DSA:3.40.50.740 578 799 2.3E-84 T 16-09-2016 BER92_RS13145 59f9508d2c2ae31e9a66b70e05a6595a 990 Gene3D G3DSA:3.40.50.740 319 394 2.3E-84 T 16-09-2016 BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 222 234 1.0E-8 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 206 1.0E-8 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 206 222 1.0E-8 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 SUPERFAMILY SSF46894 176 252 9.52E-19 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 Gene3D G3DSA:3.30.450.80 1 186 2.7E-36 T 16-09-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 SUPERFAMILY SSF75516 3 183 1.44E-31 T 16-09-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 Pfam PF03472 Autoinducer binding domain 30 175 7.8E-24 T 16-09-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 PANTHER PTHR26402 190 253 1.1E-13 T 16-09-2016 BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 PANTHER PTHR26402:SF567 190 253 1.1E-13 T 16-09-2016 BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 Gene3D G3DSA:1.10.10.10 187 253 1.4E-19 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 SMART SM00421 189 246 1.5E-18 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 ProSitePatterns PS00622 LuxR-type HTH domain signature. 206 233 - T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14600 6ca925e762cfb2e0da01eac484a944d8 254 Pfam PF00196 Bacterial regulatory proteins, luxR family 191 244 9.4E-18 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS17610 4d70267ebc1a9405980ae926b7f87461 542 SMART SM00267 370 541 4.0E-39 T 16-09-2016 IPR000160 GGDEF domain BER92_RS17610 4d70267ebc1a9405980ae926b7f87461 542 Pfam PF00990 Diguanylate cyclase, GGDEF domain 384 537 6.7E-34 T 16-09-2016 IPR000160 GGDEF domain BER92_RS17610 4d70267ebc1a9405980ae926b7f87461 542 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 383 540 7.5E-38 T 16-09-2016 IPR000160 GGDEF domain BER92_RS17610 4d70267ebc1a9405980ae926b7f87461 542 PANTHER PTHR10799 287 537 1.2E-18 T 16-09-2016 BER92_RS17610 4d70267ebc1a9405980ae926b7f87461 542 PANTHER PTHR10799:SF710 287 537 1.2E-18 T 16-09-2016 BER92_RS17610 4d70267ebc1a9405980ae926b7f87461 542 Gene3D G3DSA:3.30.70.270 383 540 1.8E-45 T 16-09-2016 BER92_RS17610 4d70267ebc1a9405980ae926b7f87461 542 SUPERFAMILY SSF55073 386 539 4.08E-41 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS02805 40d3635ad65b9b7e5f65ec0bf40aaf10 345 Gene3D G3DSA:3.20.20.70 67 328 7.3E-68 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS02805 40d3635ad65b9b7e5f65ec0bf40aaf10 345 Hamap MF_00206 Lipoyl synthase [lipA]. 50 339 148.899 T 16-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 BER92_RS02805 40d3635ad65b9b7e5f65ec0bf40aaf10 345 PANTHER PTHR10949 47 336 2.9E-174 T 16-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 BER92_RS02805 40d3635ad65b9b7e5f65ec0bf40aaf10 345 PIRSF PIRSF005963 1 344 7.9E-138 T 16-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 BER92_RS02805 40d3635ad65b9b7e5f65ec0bf40aaf10 345 Pfam PF04055 Radical SAM superfamily 103 267 4.1E-14 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS02805 40d3635ad65b9b7e5f65ec0bf40aaf10 345 SUPERFAMILY SSF102114 66 329 6.93E-62 T 16-09-2016 BER92_RS02805 40d3635ad65b9b7e5f65ec0bf40aaf10 345 SMART SM00729 97 305 1.6E-16 T 16-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 BER92_RS02805 40d3635ad65b9b7e5f65ec0bf40aaf10 345 TIGRFAM TIGR00510 lipA: lipoyl synthase 48 330 9.0E-131 T 16-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 BER92_RS02805 40d3635ad65b9b7e5f65ec0bf40aaf10 345 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 49 86 1.5E-8 T 16-09-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 Gene3D G3DSA:3.30.930.10 106 423 5.6E-139 T 16-09-2016 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 PIRSF PIRSF001529 1 426 7.1E-167 T 16-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 PANTHER PTHR11778:SF0 1 425 1.5E-197 T 16-09-2016 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 424 39.013 T 16-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 419 1.5E-158 T 16-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 108 1.0E-29 T 16-09-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 SUPERFAMILY SSF46589 1 113 9.94E-27 T 16-09-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 Gene3D G3DSA:1.10.287.40 1 105 7.3E-24 T 16-09-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 PANTHER PTHR11778 1 425 1.5E-197 T 16-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 225 402 3.5E-33 T 16-09-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 PRINTS PR00981 Seryl-tRNA synthetase signature 278 291 2.6E-33 T 16-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 PRINTS PR00981 Seryl-tRNA synthetase signature 335 351 2.6E-33 T 16-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 PRINTS PR00981 Seryl-tRNA synthetase signature 266 278 2.6E-33 T 16-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 PRINTS PR00981 Seryl-tRNA synthetase signature 318 331 2.6E-33 T 16-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 PRINTS PR00981 Seryl-tRNA synthetase signature 353 369 2.6E-33 T 16-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 BER92_RS12510 bf504072c1529301ffa1c038796984ae 426 SUPERFAMILY SSF55681 117 423 9.36E-98 T 16-09-2016 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 SUPERFAMILY SSF50341 417 546 2.62E-31 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Gene3D G3DSA:2.30.30.40 503 546 2.0E-21 T 16-09-2016 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Gene3D G3DSA:2.30.30.40 418 439 2.0E-21 T 16-09-2016 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 SMART SM01231 170 230 7.5E-16 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 415 4.8E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 372 4.8E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 PRINTS PR00344 Bacterial sensor protein C-terminal signature 320 334 4.8E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 396 4.8E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 171 229 2.9E-11 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 SMART SM00387 275 418 1.4E-25 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 SUPERFAMILY SSF47226 7 126 2.09E-28 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 SMART SM00260 410 547 3.1E-30 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Gene3D G3DSA:1.20.120.160 6 143 2.0E-36 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 PANTHER PTHR22617 129 546 1.1E-173 T 16-09-2016 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Gene3D G3DSA:3.30.565.10 233 417 2.5E-37 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Pfam PF01584 CheW-like domain 424 547 1.1E-26 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Gene3D G3DSA:1.10.287.560 170 231 3.6E-17 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 SMART SM00073 5 102 4.7E-17 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Pfam PF01627 Hpt domain 9 100 3.4E-16 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 PANTHER PTHR22617:SF6 129 546 1.1E-173 T 16-09-2016 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 SUPERFAMILY SSF47384 171 231 4.71E-13 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 278 417 1.6E-18 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 Gene3D G3DSA:2.40.50.180 442 502 5.3E-9 T 16-09-2016 BER92_RS10480 2aa09ee276aa9ae94974be7b9d3d3992 551 SUPERFAMILY SSF55874 233 416 3.93E-40 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 PANTHER PTHR30266:SF2 1 133 1.1E-50 T 16-09-2016 BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 16-09-2016 IPR019823 Large-conductance mechanosensitive channel, conserved site BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 134 2.0E-39 T 16-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 133 9.8E-44 T 16-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 97 3.1E-13 T 16-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 3.1E-13 T 16-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 98 107 3.1E-13 T 16-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 PANTHER PTHR30266 1 133 1.1E-50 T 16-09-2016 BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 136 26.216 T 16-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 BER92_RS05340 e62a4de8c494a3413b86404153c4f451 143 SUPERFAMILY SSF81330 12 129 1.57E-35 T 16-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 Pfam PF00696 Amino acid kinase family 10 291 3.3E-39 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 ProSitePatterns PS00324 Aspartokinase signature. 12 20 - T 16-09-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 SUPERFAMILY SSF51419 506 754 2.47E-56 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PIRSF PIRSF036459 1 869 0.0 T 16-09-2016 IPR011246 Bifunctional diaminopimelate decarboxylase/aspartate kinase BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 695 711 - T 16-09-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 SUPERFAMILY SSF55021 313 405 1.22E-11 T 16-09-2016 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 Gene3D G3DSA:3.40.1160.10 110 308 2.0E-54 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 Gene3D G3DSA:3.40.1160.10 8 60 2.0E-54 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 SUPERFAMILY SSF53633 9 305 8.5E-57 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 Gene3D G3DSA:3.20.20.10 525 742 6.8E-59 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 664 677 5.2E-22 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 535 553 5.2E-22 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 555 567 5.2E-22 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 843 856 5.2E-22 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 742 761 5.2E-22 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 772 861 1.7E-13 T 16-09-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 SUPERFAMILY SSF50621 732 864 1.42E-39 T 16-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 Gene3D G3DSA:2.40.37.10 743 864 1.4E-36 T 16-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 SUPERFAMILY SSF55021 389 460 2.9E-9 T 16-09-2016 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PRINTS PR01181 Diaminopimelate decarboxylase signature 853 869 1.0E-12 T 16-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PRINTS PR01181 Diaminopimelate decarboxylase signature 553 570 1.0E-12 T 16-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PRINTS PR01181 Diaminopimelate decarboxylase signature 770 788 1.0E-12 T 16-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PRINTS PR01181 Diaminopimelate decarboxylase signature 639 648 1.0E-12 T 16-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 10 460 1.2E-81 T 16-09-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PANTHER PTHR11482:SF5 484 861 3.3E-136 T 16-09-2016 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 PANTHER PTHR11482 484 861 3.3E-136 T 16-09-2016 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 503 861 3.6E-91 T 16-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 517 752 3.2E-44 T 16-09-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 BER92_RS13390 90133a0b92f8790b5eb049e7de25efd5 869 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 535 553 - T 16-09-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 PANTHER PTHR11361 18 815 0.0 T 16-09-2016 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Gene3D G3DSA:3.40.1170.10 13 132 2.1E-48 T 16-09-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Gene3D G3DSA:3.30.420.110 139 267 2.3E-39 T 16-09-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 19 865 24.685 T 16-09-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 19 870 0.0 T 16-09-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Pfam PF05192 MutS domain III 281 570 4.7E-34 T 16-09-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Pfam PF05188 MutS domain II 141 264 6.1E-28 T 16-09-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 SUPERFAMILY SSF52540 578 814 1.87E-57 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Gene3D G3DSA:1.10.1420.10 329 488 3.3E-49 T 16-09-2016 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 SUPERFAMILY SSF53150 126 277 6.67E-40 T 16-09-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 699 715 - T 16-09-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 SMART SM00533 295 602 1.1E-89 T 16-09-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 SMART SM00534 618 810 3.8E-111 T 16-09-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 PANTHER PTHR11361:SF86 18 815 0.0 T 16-09-2016 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Pfam PF00488 MutS domain V 621 813 8.8E-82 T 16-09-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Pfam PF05190 MutS family domain IV 439 530 1.0E-28 T 16-09-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Gene3D G3DSA:3.40.50.300 580 814 7.0E-78 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 SUPERFAMILY SSF55271 12 127 7.06E-42 T 16-09-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 Pfam PF01624 MutS domain I 20 131 6.9E-41 T 16-09-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 BER92_RS13240 cb2ea4d5150852dceda86934a48a6b0b 873 SUPERFAMILY SSF48334 279 576 1.7E-81 T 16-09-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BER92_RS12760 b3476aacb5d864fe0dc8bc96110efe7f 499 SUPERFAMILY SSF50249 39 136 5.86E-15 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS12760 b3476aacb5d864fe0dc8bc96110efe7f 499 SMART SM00316 37 130 4.5E-4 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS12760 b3476aacb5d864fe0dc8bc96110efe7f 499 Pfam PF10150 Ribonuclease E/G family 132 403 1.7E-102 T 16-09-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 BER92_RS12760 b3476aacb5d864fe0dc8bc96110efe7f 499 PANTHER PTHR30001 1 499 4.3E-208 T 16-09-2016 BER92_RS12760 b3476aacb5d864fe0dc8bc96110efe7f 499 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 436 3.5E-153 T 16-09-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 BER92_RS12760 b3476aacb5d864fe0dc8bc96110efe7f 499 Gene3D G3DSA:2.40.50.140 33 136 7.0E-30 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS01960 ed8101bb9d1e34fa186cfca314555663 386 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 74.706 T 16-09-2016 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 BER92_RS01960 ed8101bb9d1e34fa186cfca314555663 386 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 16-09-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 BER92_RS01960 ed8101bb9d1e34fa186cfca314555663 386 PANTHER PTHR10578 7 377 1.6E-164 T 16-09-2016 BER92_RS01960 ed8101bb9d1e34fa186cfca314555663 386 Gene3D G3DSA:3.20.20.70 6 377 1.1E-135 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS01960 ed8101bb9d1e34fa186cfca314555663 386 PIRSF PIRSF000138 2 380 5.6E-124 T 16-09-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 BER92_RS01960 ed8101bb9d1e34fa186cfca314555663 386 PANTHER PTHR10578:SF65 7 377 1.6E-164 T 16-09-2016 BER92_RS01960 ed8101bb9d1e34fa186cfca314555663 386 Pfam PF01070 FMN-dependent dehydrogenase 13 376 1.1E-127 T 16-09-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 BER92_RS01960 ed8101bb9d1e34fa186cfca314555663 386 SUPERFAMILY SSF51395 6 375 2.93E-101 T 16-09-2016 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 Gene3D G3DSA:1.10.287.610 100 152 9.6E-23 T 16-09-2016 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 PANTHER PTHR12534 1 269 1.2E-115 T 16-09-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 40.603 T 16-09-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 16-09-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 16-09-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 Pfam PF00318 Ribosomal protein S2 9 224 2.5E-90 T 16-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 226 7.1E-99 T 16-09-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 PRINTS PR00395 Ribosomal protein S2 signature 175 186 1.0E-35 T 16-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 PRINTS PR00395 Ribosomal protein S2 signature 6 24 1.0E-35 T 16-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 PRINTS PR00395 Ribosomal protein S2 signature 158 175 1.0E-35 T 16-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 PRINTS PR00395 Ribosomal protein S2 signature 196 210 1.0E-35 T 16-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 PRINTS PR00395 Ribosomal protein S2 signature 87 104 1.0E-35 T 16-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 PRINTS PR00395 Ribosomal protein S2 signature 37 46 1.0E-35 T 16-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 Gene3D G3DSA:3.40.50.10490 23 99 6.6E-63 T 16-09-2016 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 Gene3D G3DSA:3.40.50.10490 158 243 6.6E-63 T 16-09-2016 BER92_RS06440 b5eecaa530efd677a1753a7e681813a8 272 SUPERFAMILY SSF52313 6 229 1.83E-89 T 16-09-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 SUPERFAMILY SSF52343 702 839 5.11E-33 T 16-09-2016 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PANTHER PTHR19384:SF17 348 839 5.1E-94 T 16-09-2016 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 SUPERFAMILY SSF63380 535 699 2.04E-17 T 16-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PANTHER PTHR19384 348 839 5.1E-94 T 16-09-2016 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 Gene3D G3DSA:3.40.50.80 702 839 1.0E-34 T 16-09-2016 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 Pfam PF00175 Oxidoreductase NAD-binding domain 708 812 7.2E-9 T 16-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 Pfam PF03929 PepSY-associated TM region 7 354 1.0E-55 T 16-09-2016 IPR005625 PepSY-associated TM protein BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PRINTS PR00369 Flavodoxin signature 484 503 1.7E-8 T 16-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PRINTS PR00369 Flavodoxin signature 429 440 1.7E-8 T 16-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PRINTS PR00369 Flavodoxin signature 381 394 1.7E-8 T 16-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PRINTS PR00369 Flavodoxin signature 460 470 1.7E-8 T 16-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 644 651 1.2E-5 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 707 726 1.2E-5 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 798 806 1.2E-5 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 744 755 1.2E-5 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 Pfam PF00258 Flavodoxin 383 506 1.9E-23 T 16-09-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 Gene3D G3DSA:3.40.50.360 374 518 7.0E-38 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 Gene3D G3DSA:2.40.30.10 641 690 2.8E-5 T 16-09-2016 BER92_RS18540 184f7f42d6dc66c4ca06fd45cc5b3087 839 SUPERFAMILY SSF52218 379 520 4.63E-37 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS12010 9a82612522570dbe840db69e657c4553 203 Gene3D G3DSA:1.10.287.990 20 89 1.5E-30 T 16-09-2016 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 88 4.9E-34 T 16-09-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 SUPERFAMILY SSF46609 1 90 2.88E-37 T 16-09-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 PIRSF PIRSF000349 1 203 1.8E-81 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 197 6.8E-40 T 16-09-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 SUPERFAMILY SSF54719 92 201 1.31E-45 T 16-09-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 PANTHER PTHR11404 1 203 2.1E-110 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 8.3E-28 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 PRINTS PR01703 Manganese superoxide dismutase signature 72 85 8.3E-28 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 PRINTS PR01703 Manganese superoxide dismutase signature 125 133 8.3E-28 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 8.3E-28 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 8.3E-28 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12010 9a82612522570dbe840db69e657c4553 203 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 16-09-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 9 302 2.9E-138 T 16-09-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 PANTHER PTHR11075 1 311 1.5E-141 T 16-09-2016 BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 Pfam PF00472 RF-1 domain 168 276 1.0E-38 T 16-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 Pfam PF03462 PCRF domain 18 159 2.0E-46 T 16-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 SUPERFAMILY SSF75620 9 302 2.22E-119 T 16-09-2016 BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 184 200 - T 16-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 Gene3D G3DSA:3.30.160.20 167 243 4.5E-37 T 16-09-2016 IPR014720 Double-stranded RNA-binding domain BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 Gene3D G3DSA:1.20.58.410 2 55 1.2E-5 T 16-09-2016 BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 SMART SM00937 24 134 2.0E-54 T 16-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 BER92_RS09395 51312c33a78be2fcdbee0c1e46c732a4 313 PANTHER PTHR11075:SF6 1 311 1.5E-141 T 16-09-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 BER92_RS01530 c3e6cf61b56430070c3a821653d3255e 128 Pfam PF01609 Transposase DDE domain 2 118 1.5E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01530 c3e6cf61b56430070c3a821653d3255e 128 PANTHER PTHR30007 1 122 1.4E-21 T 16-09-2016 BER92_RS01530 c3e6cf61b56430070c3a821653d3255e 128 PANTHER PTHR30007:SF0 1 122 1.4E-21 T 16-09-2016 BER92_RS10535 c3e6cf61b56430070c3a821653d3255e 128 Pfam PF01609 Transposase DDE domain 2 118 1.5E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10535 c3e6cf61b56430070c3a821653d3255e 128 PANTHER PTHR30007 1 122 1.4E-21 T 16-09-2016 BER92_RS10535 c3e6cf61b56430070c3a821653d3255e 128 PANTHER PTHR30007:SF0 1 122 1.4E-21 T 16-09-2016 BER92_RS14245 c3e6cf61b56430070c3a821653d3255e 128 Pfam PF01609 Transposase DDE domain 2 118 1.5E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14245 c3e6cf61b56430070c3a821653d3255e 128 PANTHER PTHR30007 1 122 1.4E-21 T 16-09-2016 BER92_RS14245 c3e6cf61b56430070c3a821653d3255e 128 PANTHER PTHR30007:SF0 1 122 1.4E-21 T 16-09-2016 BER92_RS02035 c3e6cf61b56430070c3a821653d3255e 128 Pfam PF01609 Transposase DDE domain 2 118 1.5E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS02035 c3e6cf61b56430070c3a821653d3255e 128 PANTHER PTHR30007 1 122 1.4E-21 T 16-09-2016 BER92_RS02035 c3e6cf61b56430070c3a821653d3255e 128 PANTHER PTHR30007:SF0 1 122 1.4E-21 T 16-09-2016 BER92_RS17735 f216708113d5732b069277732a1f8288 153 SUPERFAMILY SSF53474 7 152 9.38E-21 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS17735 f216708113d5732b069277732a1f8288 153 Gene3D G3DSA:3.40.50.1820 37 152 1.6E-18 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS17735 f216708113d5732b069277732a1f8288 153 PANTHER PTHR10992 35 152 2.8E-14 T 16-09-2016 BER92_RS17735 f216708113d5732b069277732a1f8288 153 PANTHER PTHR10992:SF807 35 152 2.8E-14 T 16-09-2016 BER92_RS17735 f216708113d5732b069277732a1f8288 153 Pfam PF12146 Serine aminopeptidase, S33 83 152 5.2E-9 T 16-09-2016 IPR022742 Serine aminopeptidase, S33 BER92_RS06840 d3c39fa25fda66a2707243ddc4535464 333 Gene3D G3DSA:1.20.58.340 143 254 6.2E-38 T 16-09-2016 BER92_RS06840 d3c39fa25fda66a2707243ddc4535464 333 SUPERFAMILY SSF143865 4 265 6.8E-72 T 16-09-2016 BER92_RS06840 d3c39fa25fda66a2707243ddc4535464 333 PANTHER PTHR21535 19 333 3.4E-57 T 16-09-2016 BER92_RS06840 d3c39fa25fda66a2707243ddc4535464 333 Gene3D G3DSA:1.20.58.340 258 333 8.9E-21 T 16-09-2016 BER92_RS06840 d3c39fa25fda66a2707243ddc4535464 333 SUPERFAMILY SSF144083 269 330 5.75E-16 T 16-09-2016 BER92_RS06840 d3c39fa25fda66a2707243ddc4535464 333 Pfam PF01544 CorA-like Mg2+ transporter protein 42 329 3.4E-60 T 16-09-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BER92_RS06840 d3c39fa25fda66a2707243ddc4535464 333 Gene3D G3DSA:3.30.460.20 9 142 1.3E-38 T 16-09-2016 BER92_RS04475 83dbaf568d29b61a94fcf76e70c45973 179 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 128 176 3.0E-19 T 16-09-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB BER92_RS04475 83dbaf568d29b61a94fcf76e70c45973 179 Pfam PF11776 Nickel/cobalt transporter regulator 128 174 5.0E-18 T 16-09-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 258 265 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 255 380 3.06E-25 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 706 713 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 482 489 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 930 937 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1154 1161 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 572 699 1.8E-23 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 306 313 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 530 537 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 754 761 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1202 1209 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 802 809 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 578 585 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 354 361 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 968 1085 1.41E-23 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 626 633 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 402 409 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 850 857 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1298 1305 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 874 988 2.51E-22 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 450 457 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 898 905 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 674 681 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 PRINTS PR00327 Ice nucleation protein signature 352 366 1.7E-26 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 PRINTS PR00327 Ice nucleation protein signature 58 77 1.7E-26 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 PRINTS PR00327 Ice nucleation protein signature 639 660 1.7E-26 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 PRINTS PR00327 Ice nucleation protein signature 18 35 1.7E-26 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 175 273 1.18E-17 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 498 505 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 274 281 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 722 729 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 946 953 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 680 803 3.88E-23 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 351 476 1.88E-25 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 322 329 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 1072 1180 1.1E-19 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 770 777 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 994 1001 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1218 1225 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 370 377 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 818 825 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1042 1049 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 477 599 5.49E-23 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 675 689 8.3E-6 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 1059 1073 5.0E-6 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 339 353 5.2E-5 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 387 401 7.8E-5 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 963 977 1.3E-4 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 1283 1297 2.0E-4 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 819 833 8.3E-6 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 1123 1137 3.0E-5 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 771 785 8.3E-6 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 291 305 7.7E-6 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 867 881 8.3E-6 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 915 929 8.3E-6 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 435 449 8.3E-6 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 243 257 1.2E-4 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 723 737 2.2E-5 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 531 545 2.2E-5 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 259 273 2.2E-4 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 483 497 8.3E-6 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 627 641 2.2E-5 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 371 385 9.3E-5 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 1107 1121 2.3E-4 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 579 593 2.2E-5 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 Pfam PF00818 Ice nucleation protein repeat 931 945 1.6E-4 T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 194 201 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 866 873 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 418 425 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1090 1097 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 242 249 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 466 473 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1138 1145 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 914 921 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 1309 1453 1.26E-24 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 290 297 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 514 521 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 562 569 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 SUPERFAMILY SSF69349 1173 1316 8.63E-28 T 16-09-2016 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 338 345 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1010 1017 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 386 393 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 610 617 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1282 1289 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 434 441 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 658 665 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS16300 890db277082510d1e2e557657ff3964b 1525 ProSitePatterns PS00314 Bacterial ice-nucleation proteins octamer repeat. 1106 1113 - T 16-09-2016 IPR000258 Bacterial ice-nucleation, octamer repeat GO:0009279 BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 49 374 1.4E-124 T 16-09-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 PANTHER PTHR24220:SF481 20 325 5.5E-189 T 16-09-2016 BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 SUPERFAMILY SSF52540 19 257 1.95E-85 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 Gene3D G3DSA:3.40.50.300 15 255 4.1E-80 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 Pfam PF00005 ABC transporter 35 176 5.3E-36 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 PANTHER PTHR24220 20 325 5.5E-189 T 16-09-2016 BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 SUPERFAMILY SSF50331 252 374 4.0E-15 T 16-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 Pfam PF08402 TOBE domain 295 374 2.8E-19 T 16-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 BER92_RS07545 d10c184ae71481bd4626192d2d30de9a 376 SMART SM00382 43 231 2.8E-18 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS06415 9df5148fc9b75ca46edfdb26fa6127d2 253 PANTHER PTHR10291 6 250 7.6E-117 T 16-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 BER92_RS06415 9df5148fc9b75ca46edfdb26fa6127d2 253 SUPERFAMILY SSF64005 9 233 2.75E-82 T 16-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 BER92_RS06415 9df5148fc9b75ca46edfdb26fa6127d2 253 Pfam PF01255 Putative undecaprenyl diphosphate synthase 17 237 1.3E-75 T 16-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 BER92_RS06415 9df5148fc9b75ca46edfdb26fa6127d2 253 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 10 238 39.627 T 16-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 BER92_RS06415 9df5148fc9b75ca46edfdb26fa6127d2 253 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 183 200 - T 16-09-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 BER92_RS06415 9df5148fc9b75ca46edfdb26fa6127d2 253 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 10 237 1.4E-84 T 16-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 BER92_RS06415 9df5148fc9b75ca46edfdb26fa6127d2 253 Gene3D G3DSA:3.40.1180.10 7 245 1.6E-95 T 16-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 84 95 - T 16-09-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 SUPERFAMILY SSF53790 5 225 1.22E-78 T 16-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 Gene3D G3DSA:3.30.950.10 115 228 5.8E-42 T 16-09-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 Gene3D G3DSA:3.40.1010.10 5 114 7.4E-12 T 16-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 PANTHER PTHR21091 5 226 8.1E-83 T 16-09-2016 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 6 227 37.111 T 16-09-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 PANTHER PTHR21091:SF18 5 226 8.1E-83 T 16-09-2016 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 7 271 1.1E-80 T 16-09-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 206 1.4E-30 T 16-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 BER92_RS03705 b79aa9b1e15a7732133491e33d56e99f 275 PIRSF PIRSF005917 1 273 1.0E-96 T 16-09-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS19055 0ad6611db5dd20d68b937b9b6d163e5f 197 Pfam PF01126 Heme oxygenase 12 68 1.3E-5 T 16-09-2016 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 BER92_RS19055 0ad6611db5dd20d68b937b9b6d163e5f 197 Pfam PF01126 Heme oxygenase 109 191 3.2E-4 T 16-09-2016 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 BER92_RS19055 0ad6611db5dd20d68b937b9b6d163e5f 197 Gene3D G3DSA:1.20.910.10 9 192 8.6E-49 T 16-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 BER92_RS19055 0ad6611db5dd20d68b937b9b6d163e5f 197 SUPERFAMILY SSF48613 11 191 2.47E-43 T 16-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 BER92_RS13040 522c5e793d15e5304e21e5c77fa8f455 95 Pfam PF11954 Domain of unknown function (DUF3471) 1 75 1.7E-16 T 16-09-2016 IPR021860 Peptidase S12, Pab87-related, C-terminal BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 5.1E-23 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.1E-23 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.1E-23 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 5.1E-23 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 5.1E-23 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 Pfam PF00106 short chain dehydrogenase 3 187 3.0E-52 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 Gene3D G3DSA:3.40.50.720 2 232 2.0E-63 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 4.9E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 4.9E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 4.9E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PANTHER PTHR24322:SF392 7 133 1.6E-66 T 16-09-2016 BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PANTHER PTHR24322 7 133 1.6E-66 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 SUPERFAMILY SSF51735 3 227 4.07E-61 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PANTHER PTHR24322:SF392 149 180 1.6E-66 T 16-09-2016 BER92_RS18435 d3778f35da8bfbb09f5f6c2e8ef3f4fa 251 PANTHER PTHR24322 149 180 1.6E-66 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 6.8E-8 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 6.8E-8 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 6.8E-8 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 Gene3D G3DSA:1.10.10.10 1 81 9.6E-21 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 SUPERFAMILY SSF46785 1 88 5.69E-16 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 Gene3D G3DSA:3.40.190.10 275 285 3.6E-14 T 16-09-2016 BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 Gene3D G3DSA:3.40.190.10 90 175 3.6E-14 T 16-09-2016 BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 PANTHER PTHR30126:SF6 1 309 9.2E-80 T 16-09-2016 BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 Pfam PF03466 LysR substrate binding domain 89 292 2.3E-36 T 16-09-2016 IPR005119 LysR, substrate-binding BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 Gene3D G3DSA:3.40.190.10 176 258 5.7E-20 T 16-09-2016 BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 PANTHER PTHR30126 1 309 9.2E-80 T 16-09-2016 BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 SUPERFAMILY SSF53850 92 297 5.43E-34 T 16-09-2016 BER92_RS16760 29f4de38cec9345882949b31b1b28877 327 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 3.2E-16 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS02135 d412475dafd6f18caf935b73b44d305f 284 Pfam PF00665 Integrase core domain 119 233 3.1E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS02135 d412475dafd6f18caf935b73b44d305f 284 Pfam PF13276 HTH-like domain 41 91 2.0E-13 T 16-09-2016 IPR025948 HTH-like domain BER92_RS02135 d412475dafd6f18caf935b73b44d305f 284 SUPERFAMILY SSF53098 112 278 1.9E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS02135 d412475dafd6f18caf935b73b44d305f 284 PANTHER PTHR32552 12 282 4.3E-88 T 16-09-2016 BER92_RS02135 d412475dafd6f18caf935b73b44d305f 284 Gene3D G3DSA:3.30.420.10 113 272 1.3E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS12470 d412475dafd6f18caf935b73b44d305f 284 Pfam PF00665 Integrase core domain 119 233 3.1E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS12470 d412475dafd6f18caf935b73b44d305f 284 Pfam PF13276 HTH-like domain 41 91 2.0E-13 T 16-09-2016 IPR025948 HTH-like domain BER92_RS12470 d412475dafd6f18caf935b73b44d305f 284 SUPERFAMILY SSF53098 112 278 1.9E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS12470 d412475dafd6f18caf935b73b44d305f 284 PANTHER PTHR32552 12 282 4.3E-88 T 16-09-2016 BER92_RS12470 d412475dafd6f18caf935b73b44d305f 284 Gene3D G3DSA:3.30.420.10 113 272 1.3E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS10380 c060292b875e846ad7732abc078a4a02 458 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 38 454 1.8E-167 T 16-09-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS10380 c060292b875e846ad7732abc078a4a02 458 PANTHER PTHR15184:SF9 17 455 8.1E-223 T 16-09-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS10380 c060292b875e846ad7732abc078a4a02 458 SUPERFAMILY SSF52540 111 379 5.32E-92 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10380 c060292b875e846ad7732abc078a4a02 458 Gene3D G3DSA:3.40.50.300 111 376 9.3E-88 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10380 c060292b875e846ad7732abc078a4a02 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 163 374 2.2E-72 T 16-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS10380 c060292b875e846ad7732abc078a4a02 458 SMART SM00382 175 359 1.2E-7 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS10380 c060292b875e846ad7732abc078a4a02 458 PANTHER PTHR15184 17 455 8.1E-223 T 16-09-2016 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 Gene3D G3DSA:3.30.1360.30 280 413 6.4E-47 T 16-09-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 Gene3D G3DSA:3.30.930.10 414 584 2.1E-110 T 16-09-2016 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 Gene3D G3DSA:3.30.930.10 134 279 2.1E-110 T 16-09-2016 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 SUPERFAMILY SSF55681 115 295 9.76E-106 T 16-09-2016 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 SUPERFAMILY SSF55681 424 585 9.76E-106 T 16-09-2016 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 PANTHER PTHR22594 370 571 6.5E-246 T 16-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 PANTHER PTHR22594 1 300 6.5E-246 T 16-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 558 1.3E-105 T 16-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 PANTHER PTHR22594:SF5 370 571 6.5E-246 T 16-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 PANTHER PTHR22594:SF5 1 300 6.5E-246 T 16-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 1 563 35.023 T 16-09-2016 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 Pfam PF02938 GAD domain 311 405 4.0E-26 T 16-09-2016 IPR029351 GAD domain BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 SUPERFAMILY SSF50249 1 112 5.14E-27 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 Gene3D G3DSA:2.40.50.140 1 109 1.1E-31 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 Pfam PF01336 OB-fold nucleic acid binding domain 18 105 6.4E-13 T 16-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 193 205 6.3E-26 T 16-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 210 223 6.3E-26 T 16-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 6.3E-26 T 16-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 6.3E-26 T 16-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 2.5E-226 T 16-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 BER92_RS14495 bec5b1fa47d8f8f201fa1d4f31163b90 588 SUPERFAMILY SSF55261 293 420 1.59E-41 T 16-09-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 PANTHER PTHR32282:SF5 662 775 1.9E-245 T 16-09-2016 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 Pfam PF00905 Penicillin binding protein transpeptidase domain 423 705 7.3E-27 T 16-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 Pfam PF00912 Transglycosylase 60 235 1.3E-56 T 16-09-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 Gene3D G3DSA:1.10.3810.10 60 237 2.9E-65 T 16-09-2016 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 PANTHER PTHR32282:SF5 416 606 1.9E-245 T 16-09-2016 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 PANTHER PTHR32282:SF5 1 316 1.9E-245 T 16-09-2016 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 SUPERFAMILY SSF53955 47 262 2.59E-68 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 PANTHER PTHR32282 416 606 1.9E-245 T 16-09-2016 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 PANTHER PTHR32282 662 775 1.9E-245 T 16-09-2016 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 PANTHER PTHR32282 1 316 1.9E-245 T 16-09-2016 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 Gene3D G3DSA:3.40.710.10 663 784 4.3E-125 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 Gene3D G3DSA:3.40.710.10 238 319 4.3E-125 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 Gene3D G3DSA:3.40.710.10 415 607 4.3E-125 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 SUPERFAMILY SSF56601 417 604 4.66E-118 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 SUPERFAMILY SSF56601 268 319 4.66E-118 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 SUPERFAMILY SSF56601 216 239 4.66E-118 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 SUPERFAMILY SSF56601 662 783 4.66E-118 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 69 756 9.7E-171 T 16-09-2016 BER92_RS03630 eaad7b2eb69f28f285bc908e50583299 808 Pfam PF17092 Penicillin-binding protein OB-like domain 322 418 9.1E-9 T 16-09-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 BER92_RS02435 51b46da66bb852d33d628b64d0c4452b 265 SUPERFAMILY SSF46626 154 244 8.31E-19 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS02435 51b46da66bb852d33d628b64d0c4452b 265 PIRSF PIRSF000005 1 247 4.0E-62 T 16-09-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 BER92_RS02435 51b46da66bb852d33d628b64d0c4452b 265 Gene3D G3DSA:1.10.760.10 159 245 8.1E-27 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS02435 51b46da66bb852d33d628b64d0c4452b 265 Gene3D G3DSA:1.10.760.10 51 132 8.2E-23 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS02435 51b46da66bb852d33d628b64d0c4452b 265 SUPERFAMILY SSF46626 51 132 1.11E-17 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS02435 51b46da66bb852d33d628b64d0c4452b 265 PANTHER PTHR33751 51 252 7.2E-47 T 16-09-2016 BER92_RS02435 51b46da66bb852d33d628b64d0c4452b 265 Pfam PF00034 Cytochrome c 172 244 1.3E-9 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS02435 51b46da66bb852d33d628b64d0c4452b 265 Pfam PF00034 Cytochrome c 62 132 3.8E-6 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS02435 51b46da66bb852d33d628b64d0c4452b 265 PANTHER PTHR33751:SF3 51 252 7.2E-47 T 16-09-2016 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 18 428 7.8E-121 T 16-09-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 ProSitePatterns PS00104 EPSP synthase signature 1. 93 107 - T 16-09-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 Gene3D G3DSA:3.65.10.10 236 431 1.2E-49 T 16-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 PIRSF PIRSF000505 5 435 8.8E-118 T 16-09-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 SUPERFAMILY SSF55205 9 431 5.23E-124 T 16-09-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 14 433 31.796 T 16-09-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 Gene3D G3DSA:3.65.10.10 26 235 1.7E-59 T 16-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 ProSitePatterns PS00885 EPSP synthase signature 2. 345 363 - T 16-09-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 PANTHER PTHR21090 11 440 9.8E-176 T 16-09-2016 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 PANTHER PTHR21090:SF5 11 440 9.8E-176 T 16-09-2016 BER92_RS12525 3b9a0fa78ad34153ed7c9cb0b0c6afc1 440 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 12 423 1.1E-116 T 16-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 BER92_RS02165 c1d9e5ce9c569ae6c206c6f08b5e950f 375 SUPERFAMILY SSF50182 179 244 2.16E-13 T 16-09-2016 IPR010920 LSM domain BER92_RS02165 c1d9e5ce9c569ae6c206c6f08b5e950f 375 Pfam PF00924 Mechanosensitive ion channel 140 331 5.6E-23 T 16-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BER92_RS02165 c1d9e5ce9c569ae6c206c6f08b5e950f 375 PANTHER PTHR30566:SF10 4 371 7.2E-204 T 16-09-2016 BER92_RS02165 c1d9e5ce9c569ae6c206c6f08b5e950f 375 PANTHER PTHR30566 4 371 7.2E-204 T 16-09-2016 BER92_RS02165 c1d9e5ce9c569ae6c206c6f08b5e950f 375 Gene3D G3DSA:2.30.30.60 194 243 3.1E-6 T 16-09-2016 BER92_RS09740 c383b969a2077da6b2ace937a5a19951 253 SMART SM00450 117 218 1.9E-11 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS09740 c383b969a2077da6b2ace937a5a19951 253 Gene3D G3DSA:3.30.70.100 23 70 6.5E-4 T 16-09-2016 BER92_RS09740 c383b969a2077da6b2ace937a5a19951 253 SUPERFAMILY SSF52821 106 233 5.62E-24 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS09740 c383b969a2077da6b2ace937a5a19951 253 Gene3D G3DSA:3.40.250.10 107 228 1.1E-26 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS09740 c383b969a2077da6b2ace937a5a19951 253 PANTHER PTHR22778:SF21 8 239 4.8E-65 T 16-09-2016 BER92_RS09740 c383b969a2077da6b2ace937a5a19951 253 Pfam PF00581 Rhodanese-like domain 118 212 2.9E-5 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS09740 c383b969a2077da6b2ace937a5a19951 253 Hamap MF_00469 UPF0176 protein YceA [yceA]. 1 253 32.399 T 16-09-2016 IPR020936 Uncharacterised protein family UPF0176 BER92_RS09740 c383b969a2077da6b2ace937a5a19951 253 PANTHER PTHR22778 8 239 4.8E-65 T 16-09-2016 BER92_RS13555 9240a404224a5852b31dc2108cf224d1 221 PANTHER PTHR37943 6 77 4.8E-53 T 16-09-2016 BER92_RS13555 9240a404224a5852b31dc2108cf224d1 221 PANTHER PTHR37943 102 214 4.8E-53 T 16-09-2016 BER92_RS13555 9240a404224a5852b31dc2108cf224d1 221 PANTHER PTHR37943:SF1 6 77 4.8E-53 T 16-09-2016 BER92_RS13555 9240a404224a5852b31dc2108cf224d1 221 PANTHER PTHR37943:SF1 102 214 4.8E-53 T 16-09-2016 BER92_RS13555 9240a404224a5852b31dc2108cf224d1 221 SUPERFAMILY SSF51182 7 79 3.16E-46 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS13555 9240a404224a5852b31dc2108cf224d1 221 SUPERFAMILY SSF51182 106 220 3.16E-46 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS13555 9240a404224a5852b31dc2108cf224d1 221 Gene3D G3DSA:2.60.120.10 14 144 5.9E-43 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS13555 9240a404224a5852b31dc2108cf224d1 221 Pfam PF05962 HutD 14 214 8.4E-44 T 16-09-2016 IPR010282 Uncharacterised protein family HutD/Ves BER92_RS12135 13f73955d7fbec58e5de63550fb0f5c9 445 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 12 356 1.3E-127 T 16-09-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 BER92_RS12135 13f73955d7fbec58e5de63550fb0f5c9 445 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 6 441 30.534 T 16-09-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 BER92_RS12135 13f73955d7fbec58e5de63550fb0f5c9 445 Pfam PF02601 Exonuclease VII, large subunit 125 438 3.9E-94 T 16-09-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 BER92_RS12135 13f73955d7fbec58e5de63550fb0f5c9 445 PANTHER PTHR30008 1 441 8.8E-167 T 16-09-2016 BER92_RS12135 13f73955d7fbec58e5de63550fb0f5c9 445 Pfam PF13742 OB-fold nucleic acid binding domain 12 102 5.5E-27 T 16-09-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 BER92_RS12135 13f73955d7fbec58e5de63550fb0f5c9 445 PANTHER PTHR30008:SF0 1 441 8.8E-167 T 16-09-2016 BER92_RS15515 8c21cf44cfb2d99a42b279038942ec63 257 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 - T 16-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BER92_RS15515 8c21cf44cfb2d99a42b279038942ec63 257 PANTHER PTHR15362 3 149 4.8E-34 T 16-09-2016 BER92_RS15515 8c21cf44cfb2d99a42b279038942ec63 257 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 23 192 6.7E-34 T 16-09-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 BER92_RS15515 8c21cf44cfb2d99a42b279038942ec63 257 Pfam PF01066 CDP-alcohol phosphatidyltransferase 16 79 7.6E-15 T 16-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 PANTHER PTHR31223 367 392 7.8E-164 T 16-09-2016 BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 Pfam PF11892 Domain of unknown function (DUF3412) 342 460 1.3E-51 T 16-09-2016 IPR021826 Protein of unknown function DUF3412 BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 Pfam PF03641 Possible lysine decarboxylase 198 337 7.7E-28 T 16-09-2016 IPR031100 LOG family BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 Gene3D G3DSA:3.30.1850.10 14 125 1.2E-41 T 16-09-2016 IPR027820 Domain of unknown function DUF4478 BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 PANTHER PTHR31223:SF12 96 350 7.8E-164 T 16-09-2016 BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 PANTHER PTHR31223:SF12 367 392 7.8E-164 T 16-09-2016 BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 PANTHER PTHR31223 96 350 7.8E-164 T 16-09-2016 BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 SUPERFAMILY SSF102405 129 337 1.98E-38 T 16-09-2016 BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 Gene3D G3DSA:3.40.50.450 135 459 1.7E-109 T 16-09-2016 BER92_RS07410 faba0e1546968d517e07c1df65958d5a 461 Pfam PF14793 Domain of unknown function (DUF4478) 17 122 1.4E-38 T 16-09-2016 IPR027820 Domain of unknown function DUF4478 BER92_RS01615 2a255bb4fb6ba29af79ea344e6549320 292 SUPERFAMILY SSF53335 7 284 2.06E-75 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS01615 2a255bb4fb6ba29af79ea344e6549320 292 Pfam PF01564 Spermine/spermidine synthase 15 243 7.6E-65 T 16-09-2016 BER92_RS01615 2a255bb4fb6ba29af79ea344e6549320 292 Gene3D G3DSA:3.40.50.150 61 284 1.0E-70 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS01615 2a255bb4fb6ba29af79ea344e6549320 292 PANTHER PTHR11558 5 287 6.6E-104 T 16-09-2016 BER92_RS01615 2a255bb4fb6ba29af79ea344e6549320 292 TIGRFAM TIGR00417 speE: spermidine synthase 7 278 4.7E-81 T 16-09-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 BER92_RS01615 2a255bb4fb6ba29af79ea344e6549320 292 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 284 36.393 T 16-09-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 BER92_RS01615 2a255bb4fb6ba29af79ea344e6549320 292 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 83 96 - T 16-09-2016 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 BER92_RS01615 2a255bb4fb6ba29af79ea344e6549320 292 Gene3D G3DSA:2.30.140.10 5 58 4.1E-17 T 16-09-2016 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Gene3D G3DSA:3.40.930.10 10 146 1.7E-32 T 16-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 SUPERFAMILY SSF51621 524 815 9.95E-100 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Pfam PF05524 PEP-utilising enzyme, N-terminal 277 395 3.6E-19 T 16-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 SUPERFAMILY SSF55804 10 145 3.4E-32 T 16-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 275 830 2.3E-143 T 16-09-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 173 180 - T 16-09-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Pfam PF00391 PEP-utilising enzyme, mobile domain 425 496 4.5E-19 T 16-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Gene3D G3DSA:1.10.274.10 312 401 3.5E-26 T 16-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 PRINTS PR00107 Phosphocarrier protein signature 173 189 1.7E-14 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 PRINTS PR00107 Phosphocarrier protein signature 198 213 1.7E-14 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 PRINTS PR00107 Phosphocarrier protein signature 213 230 1.7E-14 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 PANTHER PTHR22931 312 816 1.0E-267 T 16-09-2016 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 713 728 1.2E-21 T 16-09-2016 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 730 745 1.2E-21 T 16-09-2016 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 766 778 1.2E-21 T 16-09-2016 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 564 583 1.2E-21 T 16-09-2016 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Pfam PF00381 PTS HPr component phosphorylation site 164 241 8.3E-20 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 713 731 - T 16-09-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 163 241 3.5E-18 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 PANTHER PTHR22931:SF15 312 816 1.0E-267 T 16-09-2016 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 9 144 7.9E-28 T 16-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Gene3D G3DSA:3.50.30.10 402 523 8.1E-33 T 16-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Gene3D G3DSA:3.20.20.60 526 832 5.5E-103 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 SUPERFAMILY SSF47831 312 410 8.24E-23 T 16-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Gene3D G3DSA:3.30.1340.10 163 242 3.6E-24 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 199 214 - T 16-09-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 SUPERFAMILY SSF52009 395 516 3.14E-28 T 16-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 455 466 - T 16-09-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 16-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 SUPERFAMILY SSF55594 163 242 9.55E-21 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS12550 479cc64697f70e3a2102f6e170f260d7 838 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 522 805 2.2E-108 T 16-09-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 Pfam PF02154 Flagellar motor switch protein FliM 38 230 5.5E-73 T 16-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 PANTHER PTHR30034:SF0 4 334 7.2E-157 T 16-09-2016 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 1.1E-24 T 16-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 PRINTS PR00955 Flagellar motor switch protein FliM signature 4 17 1.1E-24 T 16-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 1.1E-24 T 16-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 1.1E-24 T 16-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 SUPERFAMILY SSF101801 249 321 5.23E-15 T 16-09-2016 IPR001543 Surface presentation of antigen (SpoA) BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 5 318 8.6E-105 T 16-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 251 318 4.8E-19 T 16-09-2016 IPR001543 Surface presentation of antigen (SpoA) BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 SUPERFAMILY SSF103039 7 15 2.01E-19 T 16-09-2016 IPR028976 CheC-like domain BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 SUPERFAMILY SSF103039 55 231 2.01E-19 T 16-09-2016 IPR028976 CheC-like domain BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 PANTHER PTHR30034 4 334 7.2E-157 T 16-09-2016 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 Gene3D G3DSA:2.30.330.10 243 319 3.7E-10 T 16-09-2016 BER92_RS10400 5e4515e4b7a48c2860e2236720d021b7 337 PIRSF PIRSF002888 3 327 7.8E-92 T 16-09-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 PANTHER PTHR11544:SF63 1 72 7.0E-36 T 16-09-2016 BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 PIRSF PIRSF002599 2 74 6.7E-22 T 16-09-2016 IPR012156 Cold shock, CspA GO:0003676 BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 Gene3D G3DSA:2.40.50.140 7 71 1.9E-28 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 Pfam PF00313 'Cold-shock' DNA-binding domain 8 71 1.9E-28 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 ProSitePatterns PS00352 'Cold-shock' domain signature. 20 39 - T 16-09-2016 IPR019844 Cold-shock conserved site BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 SMART SM00357 8 72 6.3E-27 T 16-09-2016 IPR011129 Cold shock protein GO:0003676 BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 SUPERFAMILY SSF50249 5 71 1.14E-24 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 PRINTS PR00050 Cold shock protein signature 9 24 9.0E-16 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 PRINTS PR00050 Cold shock protein signature 30 39 9.0E-16 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 PRINTS PR00050 Cold shock protein signature 45 63 9.0E-16 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS12055 9e6a98d46681c993186fc8e9788f5f9c 74 PANTHER PTHR11544 1 72 7.0E-36 T 16-09-2016 BER92_RS03255 5abed3b964ad2777eb7e0ce27e5ec8e7 370 PANTHER PTHR12526:SF141 10 370 3.7E-83 T 16-09-2016 BER92_RS03255 5abed3b964ad2777eb7e0ce27e5ec8e7 370 Gene3D G3DSA:3.40.50.2000 154 358 5.8E-15 T 16-09-2016 BER92_RS03255 5abed3b964ad2777eb7e0ce27e5ec8e7 370 SUPERFAMILY SSF53756 1 368 1.67E-54 T 16-09-2016 BER92_RS03255 5abed3b964ad2777eb7e0ce27e5ec8e7 370 Pfam PF00534 Glycosyl transferases group 1 194 343 3.9E-14 T 16-09-2016 IPR001296 Glycosyl transferase, family 1 BER92_RS03255 5abed3b964ad2777eb7e0ce27e5ec8e7 370 Pfam PF13439 Glycosyltransferase Family 4 16 169 9.5E-23 T 16-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain BER92_RS03255 5abed3b964ad2777eb7e0ce27e5ec8e7 370 PANTHER PTHR12526 10 370 3.7E-83 T 16-09-2016 BER92_RS08100 12490c923fe8dcce0f8b840c8bdcb303 133 PANTHER PTHR30007 4 129 6.9E-24 T 16-09-2016 BER92_RS08100 12490c923fe8dcce0f8b840c8bdcb303 133 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 84 1.3E-25 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS08100 12490c923fe8dcce0f8b840c8bdcb303 133 PANTHER PTHR30007:SF0 4 129 6.9E-24 T 16-09-2016 BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 271 443 7.9E-25 T 16-09-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 SUPERFAMILY SSF50249 13 73 6.85E-11 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 264 436 3.1E-58 T 16-09-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 426 436 - T 16-09-2016 IPR030391 RNA methyltransferase TrmA, conserved site BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 14 444 67.7 T 16-09-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 Gene3D G3DSA:2.40.50.140 13 86 6.6E-26 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 374 404 - T 16-09-2016 IPR030390 RNA methyltransferase TrmA, active site BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 Gene3D G3DSA:3.40.50.150 262 443 7.1E-54 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 PANTHER PTHR11061 17 444 6.9E-116 T 16-09-2016 BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 SUPERFAMILY SSF53335 75 443 9.58E-78 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS06995 2c75aac96c48bc273a19f3ef6a1b3f63 444 PANTHER PTHR11061:SF30 17 444 6.9E-116 T 16-09-2016 BER92_RS07200 b5146566d963aa2aa54ac4625fdc6d26 229 SUPERFAMILY SSF49503 51 141 4.57E-20 T 16-09-2016 IPR008972 Cupredoxin BER92_RS07200 b5146566d963aa2aa54ac4625fdc6d26 229 Gene3D G3DSA:2.60.40.420 53 141 5.2E-14 T 16-09-2016 IPR008972 Cupredoxin BER92_RS07200 b5146566d963aa2aa54ac4625fdc6d26 229 SUPERFAMILY SSF49464 123 184 1.41E-5 T 16-09-2016 IPR008969 Carboxypeptidase-like, regulatory domain BER92_RS06885 ed51f97e691d867436ae1cd72ff8c81f 419 PANTHER PTHR19271:SF9 9 417 6.2E-263 T 16-09-2016 BER92_RS06885 ed51f97e691d867436ae1cd72ff8c81f 419 PANTHER PTHR19271 9 417 6.2E-263 T 16-09-2016 BER92_RS06885 ed51f97e691d867436ae1cd72ff8c81f 419 SUPERFAMILY SSF81648 294 410 9.16E-32 T 16-09-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 BER92_RS06885 ed51f97e691d867436ae1cd72ff8c81f 419 PIRSF PIRSF038885 5 419 8.3E-155 T 16-09-2016 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 BER92_RS06885 ed51f97e691d867436ae1cd72ff8c81f 419 Gene3D G3DSA:1.20.810.10 15 413 4.0E-157 T 16-09-2016 IPR027387 Cytochrome b/b6-like domain BER92_RS06885 ed51f97e691d867436ae1cd72ff8c81f 419 Pfam PF00033 Cytochrome b/b6/petB 32 220 9.5E-68 T 16-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 BER92_RS06885 ed51f97e691d867436ae1cd72ff8c81f 419 SUPERFAMILY SSF81342 24 292 2.98E-95 T 16-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 BER92_RS06885 ed51f97e691d867436ae1cd72ff8c81f 419 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 290 393 2.7E-38 T 16-09-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 BER92_RS04950 1c859788155601232a952dba92d98ee7 184 SUPERFAMILY SSF117916 82 182 1.73E-26 T 16-09-2016 BER92_RS04950 1c859788155601232a952dba92d98ee7 184 PANTHER PTHR13696 18 180 4.6E-53 T 16-09-2016 BER92_RS04950 1c859788155601232a952dba92d98ee7 184 TIGRFAM TIGR03406 FeS_long_SufT: probable FeS assembly SUF system protein SufT 9 183 1.1E-81 T 16-09-2016 IPR017776 FeS assembly SUF system protein SufT, putative BER92_RS04950 1c859788155601232a952dba92d98ee7 184 PANTHER PTHR13696:SF62 18 180 4.6E-53 T 16-09-2016 BER92_RS04950 1c859788155601232a952dba92d98ee7 184 Pfam PF01883 Domain of unknown function DUF59 86 160 4.9E-12 T 16-09-2016 IPR002744 Domain of unknown function DUF59 BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 Pfam PF01804 Penicillin amidase 46 794 1.6E-123 T 16-09-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 Gene3D G3DSA:3.60.20.10 254 339 1.6E-77 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 Gene3D G3DSA:3.60.20.10 403 650 1.6E-77 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 PANTHER PTHR34218:SF2 483 803 2.6E-205 T 16-09-2016 BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 PANTHER PTHR34218:SF2 1 462 2.6E-205 T 16-09-2016 BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 SUPERFAMILY SSF56235 42 802 1.77E-160 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 PIRSF PIRSF001227 4 804 6.9E-143 T 16-09-2016 IPR014395 Penicillin acylase GO:0016811 BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 Gene3D G3DSA:1.10.439.10 42 183 8.2E-40 T 16-09-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 Gene3D G3DSA:2.30.120.10 349 394 9.8E-8 T 16-09-2016 BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 PANTHER PTHR34218 483 803 2.6E-205 T 16-09-2016 BER92_RS06515 9dd3da358d7c5ef4cfa611192ff7838f 805 PANTHER PTHR34218 1 462 2.6E-205 T 16-09-2016 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 ProSitePatterns PS01016 Glycoprotease family signature. 100 120 - T 16-09-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 Pfam PF00814 Glycoprotease family 29 311 4.6E-101 T 16-09-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 5.5E-114 T 16-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 PANTHER PTHR11735:SF6 1 339 4.3E-156 T 16-09-2016 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 SUPERFAMILY SSF53067 3 127 3.17E-30 T 16-09-2016 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 7.2E-131 T 16-09-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 Gene3D G3DSA:3.30.420.40 2 163 3.4E-47 T 16-09-2016 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 335 63.746 T 16-09-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 PANTHER PTHR11735 1 339 4.3E-156 T 16-09-2016 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 SUPERFAMILY SSF53067 105 313 1.35E-40 T 16-09-2016 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 3.5E-52 T 16-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 3.5E-52 T 16-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 3.5E-52 T 16-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 80 100 3.5E-52 T 16-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 135 147 3.5E-52 T 16-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS18225 00f0a5acbc3f6d585be94b0dd1f59047 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 158 179 3.5E-52 T 16-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS17265 bc57a84a89b467bef3381699c35b1cd8 478 PANTHER PTHR30294:SF26 1 273 2.6E-17 T 16-09-2016 BER92_RS17265 bc57a84a89b467bef3381699c35b1cd8 478 Pfam PF12679 ABC-2 family transporter protein 7 264 3.6E-24 T 16-09-2016 IPR032688 ABC-2 family transporter protein GO:0006810 BER92_RS17265 bc57a84a89b467bef3381699c35b1cd8 478 PANTHER PTHR30294 1 273 2.6E-17 T 16-09-2016 BER92_RS17265 bc57a84a89b467bef3381699c35b1cd8 478 Pfam PF12040 Domain of unknown function (DUF3526) 272 438 1.8E-37 T 16-09-2016 IPR021913 Protein of unknown function DUF3526 BER92_RS09690 3f4115978d31406615b581eeb0edbae0 140 PANTHER PTHR33446 43 132 2.3E-23 T 16-09-2016 BER92_RS09690 3f4115978d31406615b581eeb0edbae0 140 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 43 120 6.5E-21 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS09690 3f4115978d31406615b581eeb0edbae0 140 SUPERFAMILY SSF74653 38 119 7.98E-20 T 16-09-2016 BER92_RS09690 3f4115978d31406615b581eeb0edbae0 140 Gene3D G3DSA:3.30.1150.10 36 121 1.8E-13 T 16-09-2016 BER92_RS09690 3f4115978d31406615b581eeb0edbae0 140 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 45 121 5.0E-19 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS06065 f1c8b0a2d1ff732c690a9b7bb92de161 362 Pfam PF01757 Acyltransferase family 30 344 1.6E-25 T 16-09-2016 IPR002656 Acyltransferase 3 GO:0016747 BER92_RS06065 f1c8b0a2d1ff732c690a9b7bb92de161 362 PANTHER PTHR37312 12 361 2.6E-75 T 16-09-2016 BER92_RS11955 eca2355b4ee34b28674019751718f194 377 Gene3D G3DSA:2.160.20.10 20 376 2.5E-56 T 16-09-2016 IPR012334 Pectin lyase fold BER92_RS11955 eca2355b4ee34b28674019751718f194 377 SUPERFAMILY SSF51126 26 376 1.85E-46 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS11955 eca2355b4ee34b28674019751718f194 377 SMART SM00656 33 315 2.6E-6 T 16-09-2016 IPR002022 Pectate lyase/Amb allergen BER92_RS11955 eca2355b4ee34b28674019751718f194 377 PANTHER PTHR31683 36 191 5.8E-27 T 16-09-2016 BER92_RS11955 eca2355b4ee34b28674019751718f194 377 PANTHER PTHR31683 217 272 5.8E-27 T 16-09-2016 BER92_RS11955 eca2355b4ee34b28674019751718f194 377 PANTHER PTHR31683:SF6 36 191 5.8E-27 T 16-09-2016 BER92_RS11955 eca2355b4ee34b28674019751718f194 377 PANTHER PTHR31683:SF6 291 309 5.8E-27 T 16-09-2016 BER92_RS11955 eca2355b4ee34b28674019751718f194 377 PANTHER PTHR31683:SF6 217 272 5.8E-27 T 16-09-2016 BER92_RS11955 eca2355b4ee34b28674019751718f194 377 PANTHER PTHR31683 291 309 5.8E-27 T 16-09-2016 BER92_RS11955 eca2355b4ee34b28674019751718f194 377 Pfam PF00544 Pectate lyase 81 189 1.3E-4 T 16-09-2016 IPR002022 Pectate lyase/Amb allergen BER92_RS11955 eca2355b4ee34b28674019751718f194 377 Pfam PF00544 Pectate lyase 218 309 1.9E-5 T 16-09-2016 IPR002022 Pectate lyase/Amb allergen BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 134 5.4E-6 T 16-09-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 SUPERFAMILY SSF54826 3 138 1.93E-37 T 16-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 Gene3D G3DSA:3.30.390.10 2 178 7.1E-84 T 16-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 Pfam PF13378 Enolase C-terminal domain-like 202 417 5.8E-60 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 Gene3D G3DSA:3.20.20.120 182 426 1.4E-86 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 PANTHER PTHR13794 1 151 7.9E-182 T 16-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 PANTHER PTHR13794 187 438 7.9E-182 T 16-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 SMART SM00922 199 295 9.2E-26 T 16-09-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 PANTHER PTHR13794:SF58 1 151 7.9E-182 T 16-09-2016 BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 PANTHER PTHR13794:SF58 187 438 7.9E-182 T 16-09-2016 BER92_RS01120 9b416cfc07b42eb0e456bfa05a8a4554 439 SUPERFAMILY SSF51604 184 431 4.19E-69 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PANTHER PTHR11638 177 543 0.0 T 16-09-2016 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PANTHER PTHR11638 561 905 0.0 T 16-09-2016 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 SUPERFAMILY SSF52540 195 531 3.94E-71 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 Gene3D G3DSA:3.40.50.300 196 378 8.7E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 330 342 - T 16-09-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 753 767 1.4E-34 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 720 738 1.4E-34 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 691 709 1.4E-34 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.4E-34 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 Gene3D G3DSA:1.10.8.60 828 903 4.0E-8 T 16-09-2016 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PANTHER PTHR11638:SF122 177 543 0.0 T 16-09-2016 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PANTHER PTHR11638:SF122 1 145 0.0 T 16-09-2016 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 23 75 1.5E-9 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 SMART SM00382 642 802 2.8E-11 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 SMART SM00382 234 379 1.3E-11 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 899 0.0 T 16-09-2016 IPR017729 Type VI secretion system, ATPase ClpV1 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 239 351 3.3E-10 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 Gene3D G3DSA:3.40.50.300 597 827 1.9E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 SMART SM01086 816 909 1.4E-7 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 Gene3D G3DSA:1.10.1780.10 10 127 6.0E-21 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 Gene3D G3DSA:1.10.8.60 382 462 2.7E-24 T 16-09-2016 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PANTHER PTHR11638:SF122 561 905 0.0 T 16-09-2016 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 SUPERFAMILY SSF52540 591 885 6.09E-62 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 Pfam PF07724 AAA domain (Cdc48 subfamily) 642 810 2.6E-42 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 817 893 1.2E-9 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 SUPERFAMILY SSF81923 11 127 3.53E-19 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS09830 9b22303e2602413ddaa8c03429f221fb 912 PANTHER PTHR11638 1 145 0.0 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 409 436 8.5E-13 T 16-09-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 SUPERFAMILY SSF47781 665 732 7.12E-5 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 14 493 3.4E-187 T 16-09-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Gene3D G3DSA:3.30.470.30 121 254 1.9E-48 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Gene3D G3DSA:1.10.150.20 437 488 5.7E-19 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Gene3D G3DSA:1.10.150.20 554 570 5.7E-19 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 SUPERFAMILY SSF56091 7 318 5.76E-113 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 9 320 1.5E-119 T 16-09-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 753 824 1.6E-12 T 16-09-2016 IPR001357 BRCT domain BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 SUPERFAMILY SSF50249 320 403 2.91E-26 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Gene3D G3DSA:1.10.150.20 571 650 1.6E-23 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Gene3D G3DSA:1.10.150.20 665 731 6.0E-5 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Pfam PF12826 Helix-hairpin-helix motif 577 640 1.0E-12 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Gene3D G3DSA:1.10.287.610 6 67 7.2E-25 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 PANTHER PTHR23389:SF9 550 600 8.4E-195 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 SUPERFAMILY SSF52113 752 826 1.12E-17 T 16-09-2016 IPR001357 BRCT domain BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 PANTHER PTHR23389 6 484 8.4E-195 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 PANTHER PTHR23389 550 600 8.4E-195 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 324 399 6.8E-33 T 16-09-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 117 146 - T 16-09-2016 IPR018239 NAD-dependent DNA ligase, active site BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 SMART SM00532 6 450 6.6E-246 T 16-09-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 SMART SM00292 752 829 1.5E-11 T 16-09-2016 IPR001357 BRCT domain BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 SUPERFAMILY SSF47781 558 650 6.3E-50 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 SUPERFAMILY SSF47781 406 492 6.3E-50 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Gene3D G3DSA:2.40.50.140 321 393 2.7E-32 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Hamap MF_01588 DNA ligase [ligA]. 5 826 51.186 T 16-09-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 PANTHER PTHR23389:SF9 6 484 8.4E-195 T 16-09-2016 BER92_RS08470 e8fe4cc214fd906c4395552e500605b5 833 Gene3D G3DSA:3.40.50.10190 751 827 7.4E-24 T 16-09-2016 IPR001357 BRCT domain BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 SMART SM00382 362 536 1.0E-13 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 SMART SM00382 26 223 5.4E-8 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 SUPERFAMILY SSF52540 2 81 1.08E-43 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 SUPERFAMILY SSF52540 119 239 1.08E-43 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 PANTHER PTHR19211 1 326 0.0 T 16-09-2016 BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 PANTHER PTHR19211 349 563 0.0 T 16-09-2016 BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 SUPERFAMILY SSF52540 348 536 1.44E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 Pfam PF12848 ABC transporter 217 296 1.1E-22 T 16-09-2016 IPR032781 ABC-transporter extension domain BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 PANTHER PTHR19211:SF49 1 326 0.0 T 16-09-2016 BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 PANTHER PTHR19211:SF49 349 563 0.0 T 16-09-2016 BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 Pfam PF16326 ABC transporter C-terminal domain 581 639 3.4E-9 T 16-09-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 Gene3D G3DSA:3.40.50.300 347 556 3.2E-39 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 Gene3D G3DSA:3.40.50.300 1 266 2.5E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 ProSitePatterns PS00211 ABC transporters family signature. 456 470 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 Pfam PF00005 ABC transporter 353 484 3.3E-21 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS14515 64f261ea6a0ff780c012a905ade1fedf 644 Pfam PF00005 ABC transporter 17 178 1.7E-21 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 SUPERFAMILY SSF69065 11 157 1.34E-43 T 16-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 Pfam PF14622 Ribonuclease-III-like 18 138 1.1E-30 T 16-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 Pfam PF00035 Double-stranded RNA binding motif 155 222 1.7E-11 T 16-09-2016 IPR014720 Double-stranded RNA-binding domain BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 SMART SM00358 155 223 7.8E-19 T 16-09-2016 IPR014720 Double-stranded RNA-binding domain BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 Gene3D G3DSA:1.10.1520.10 12 141 4.2E-39 T 16-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 PANTHER PTHR11207 12 223 1.5E-83 T 16-09-2016 BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 SMART SM00535 20 148 1.3E-47 T 16-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 27.51 T 16-09-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 16-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 SUPERFAMILY SSF54768 108 222 1.89E-25 T 16-09-2016 BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 Gene3D G3DSA:3.30.160.20 153 222 4.3E-23 T 16-09-2016 IPR014720 Double-stranded RNA-binding domain BER92_RS06975 8f75778c8388e3abb9f65d9744b24bad 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 12 221 7.9E-69 T 16-09-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 BER92_RS18785 068eecd911746c2d1dbf27c44d21450f 278 Gene3D G3DSA:3.90.850.10 13 271 7.9E-42 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS18785 068eecd911746c2d1dbf27c44d21450f 278 PANTHER PTHR30143 1 275 1.2E-80 T 16-09-2016 BER92_RS18785 068eecd911746c2d1dbf27c44d21450f 278 SUPERFAMILY SSF56529 14 268 4.71E-35 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 PRINTS PR00045 Sigma-54 factor signature 394 405 1.6E-26 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 PRINTS PR00045 Sigma-54 factor signature 452 470 1.6E-26 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 PRINTS PR00045 Sigma-54 factor signature 188 205 1.6E-26 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 PRINTS PR00045 Sigma-54 factor signature 378 390 1.6E-26 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 48 1.0E-18 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 PIRSF PIRSF000774 1 479 9.4E-137 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 PANTHER PTHR32248:SF4 1 479 2.5E-157 T 16-09-2016 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 PANTHER PTHR32248 1 479 2.5E-157 T 16-09-2016 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 366 385 - T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 457 464 - T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 Pfam PF04552 Sigma-54, DNA binding domain 320 477 8.2E-64 T 16-09-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 Pfam PF04963 Sigma-54 factor, core binding domain 113 306 1.9E-50 T 16-09-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 BER92_RS13670 0bc7e3f5764ed55145b0f097775af4b1 479 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 475 7.2E-149 T 16-09-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BER92_RS08310 d3dc88b927ab00c3ed1dddefa213bcc0 232 Gene3D G3DSA:1.10.287.460 11 118 4.2E-25 T 16-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BER92_RS08310 d3dc88b927ab00c3ed1dddefa213bcc0 232 Gene3D G3DSA:3.10.50.40 119 232 9.4E-19 T 16-09-2016 BER92_RS08310 d3dc88b927ab00c3ed1dddefa213bcc0 232 SUPERFAMILY SSF54534 27 232 1.29E-32 T 16-09-2016 BER92_RS08310 d3dc88b927ab00c3ed1dddefa213bcc0 232 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 19 135 3.4E-26 T 16-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BER92_RS08310 d3dc88b927ab00c3ed1dddefa213bcc0 232 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 181 229 6.0E-7 T 16-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 BER92_RS11110 ae6e3d31d3469dfc3b812ac53dbd12de 235 PANTHER PTHR32552:SF26 1 225 1.6E-72 T 16-09-2016 BER92_RS11110 ae6e3d31d3469dfc3b812ac53dbd12de 235 Pfam PF13683 Integrase core domain 152 218 1.6E-28 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS11110 ae6e3d31d3469dfc3b812ac53dbd12de 235 SUPERFAMILY SSF53098 63 226 1.77E-40 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11110 ae6e3d31d3469dfc3b812ac53dbd12de 235 PANTHER PTHR32552 1 225 1.6E-72 T 16-09-2016 BER92_RS11110 ae6e3d31d3469dfc3b812ac53dbd12de 235 Gene3D G3DSA:3.30.420.10 65 218 2.2E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 SMART SM01228 552 623 4.9E-40 T 16-09-2016 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 374 397 - T 16-09-2016 IPR020595 MnmG-related, conserved site BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 Pfam PF01134 Glucose inhibited division protein A 9 403 7.7E-161 T 16-09-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 Gene3D G3DSA:3.50.50.60 8 239 2.2E-43 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 PANTHER PTHR11806 1 632 0.0 T 16-09-2016 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 Pfam PF13932 GidA associated domain 409 621 1.8E-66 T 16-09-2016 IPR026904 GidA associated domain 3 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 SUPERFAMILY SSF51905 8 69 2.6E-44 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 SUPERFAMILY SSF51905 100 267 2.6E-44 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 6 630 41.366 T 16-09-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 PANTHER PTHR11806:SF0 1 632 0.0 T 16-09-2016 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 8 627 3.8E-265 T 16-09-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 BER92_RS17715 61aa938a4c0c106341128aa477013a62 634 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 279 293 - T 16-09-2016 IPR020595 MnmG-related, conserved site BER92_RS00885 24b11252ceb0677f74230acbd06ea6b6 132 Pfam PF06995 Phage P2 GpU 6 125 1.1E-39 T 16-09-2016 IPR009734 Myoviridae, GpU BER92_RS00885 24b11252ceb0677f74230acbd06ea6b6 132 PIRSF PIRSF029208 1 132 5.1E-47 T 16-09-2016 IPR016912 Bacteriophage P2, GpU BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 SUPERFAMILY SSF47384 225 300 2.35E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 SUPERFAMILY SSF55874 311 457 1.83E-35 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 Pfam PF00672 HAMP domain 171 237 9.5E-7 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 Gene3D G3DSA:1.10.287.130 234 300 1.8E-10 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 300 5.8E-10 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 PANTHER PTHR24423 74 130 1.7E-84 T 16-09-2016 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 PANTHER PTHR24423 184 457 1.7E-84 T 16-09-2016 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 PANTHER PTHR24423:SF556 74 130 1.7E-84 T 16-09-2016 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 PANTHER PTHR24423:SF556 184 457 1.7E-84 T 16-09-2016 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 Gene3D G3DSA:3.30.565.10 313 457 7.9E-35 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 Pfam PF08521 Two-component sensor kinase N-terminal 25 165 5.5E-38 T 16-09-2016 IPR013727 Two-component sensor kinase, N-terminal BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 416 7.3E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 7.3E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 7.3E-12 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 SMART SM00387 352 460 4.1E-29 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 456 1.2E-19 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03180 8df19ab6a7d53740179c89b23af39248 461 SMART SM00388 242 307 8.9E-12 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 Gene3D G3DSA:3.30.70.870 305 404 2.3E-34 T 16-09-2016 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 Gene3D G3DSA:2.40.30.10 207 304 3.7E-25 T 16-09-2016 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 6 604 4.3E-279 T 16-09-2016 IPR006298 GTP-binding protein TypA GO:0005525 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 SMART SM00838 400 488 7.9E-4 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 16-09-2016 IPR031157 Tr-type G domain, conserved site BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 SUPERFAMILY SSF54980 403 516 8.63E-26 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 SUPERFAMILY SSF50447 152 300 6.24E-32 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 Pfam PF00679 Elongation factor G C-terminus 402 480 3.1E-22 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 PANTHER PTHR23115:SF14 4 598 4.6E-285 T 16-09-2016 IPR006298 GTP-binding protein TypA GO:0005525 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 Pfam PF03144 Elongation factor Tu domain 2 220 290 3.3E-9 T 16-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 PANTHER PTHR23115 4 598 4.6E-285 T 16-09-2016 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 SUPERFAMILY SSF54980 303 392 1.15E-14 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 Pfam PF00009 Elongation factor Tu GTP binding domain 5 195 1.5E-54 T 16-09-2016 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 Gene3D G3DSA:3.30.70.240 405 482 1.4E-31 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 PRINTS PR00315 GTP-binding elongation factor signature 52 60 5.3E-13 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 PRINTS PR00315 GTP-binding elongation factor signature 72 82 5.3E-13 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 PRINTS PR00315 GTP-binding elongation factor signature 124 133 5.3E-13 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 PRINTS PR00315 GTP-binding elongation factor signature 8 21 5.3E-13 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 Gene3D G3DSA:2.40.50.250 488 582 6.4E-36 T 16-09-2016 BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 Gene3D G3DSA:3.40.50.300 4 206 7.4E-65 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 SUPERFAMILY SSF52540 3 208 6.47E-58 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02180 ef16e3bc22a019687f00efc883787d6b 609 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 140 1.6E-24 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS05890 08f4d4ef1c0061e8e974ccd31d9fbe1a 94 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 83 2.9E-21 T 16-09-2016 IPR009678 Bacteriophage tail completion protein R BER92_RS02595 34ee406accefddc345d66ebca60d46e5 645 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 6 645 48.427 T 16-09-2016 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 UniPathway: UPA00637 BER92_RS02595 34ee406accefddc345d66ebca60d46e5 645 SUPERFAMILY SSF53448 143 432 4.22E-22 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS02595 34ee406accefddc345d66ebca60d46e5 645 PANTHER PTHR10587:SF63 45 317 2.2E-134 T 16-09-2016 BER92_RS02595 34ee406accefddc345d66ebca60d46e5 645 PANTHER PTHR10587:SF63 367 645 2.2E-134 T 16-09-2016 BER92_RS02595 34ee406accefddc345d66ebca60d46e5 645 PANTHER PTHR10587 45 317 2.2E-134 T 16-09-2016 BER92_RS02595 34ee406accefddc345d66ebca60d46e5 645 PANTHER PTHR10587 367 645 2.2E-134 T 16-09-2016 BER92_RS02595 34ee406accefddc345d66ebca60d46e5 645 Pfam PF13632 Glycosyl transferase family group 2 242 465 2.0E-15 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS15730 218062523bb65a695bd612f60a5e36aa 222 Gene3D G3DSA:3.40.30.10 3 100 3.1E-25 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS15730 218062523bb65a695bd612f60a5e36aa 222 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 7 218 6.5E-88 T 16-09-2016 IPR005955 Maleylacetoacetate isomerase GO:0003824|GO:0005737|GO:0009072 BER92_RS15730 218062523bb65a695bd612f60a5e36aa 222 SUPERFAMILY SSF47616 88 220 1.01E-31 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS15730 218062523bb65a695bd612f60a5e36aa 222 Gene3D G3DSA:1.20.1050.10 101 219 2.7E-52 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS15730 218062523bb65a695bd612f60a5e36aa 222 PANTHER PTHR11260:SF289 1 218 2.5E-109 T 16-09-2016 BER92_RS15730 218062523bb65a695bd612f60a5e36aa 222 SUPERFAMILY SSF52833 5 110 3.85E-18 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS15730 218062523bb65a695bd612f60a5e36aa 222 Pfam PF13410 Glutathione S-transferase, C-terminal domain 141 181 1.6E-6 T 16-09-2016 BER92_RS15730 218062523bb65a695bd612f60a5e36aa 222 Pfam PF13417 Glutathione S-transferase, N-terminal domain 7 84 2.0E-12 T 16-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BER92_RS15730 218062523bb65a695bd612f60a5e36aa 222 PANTHER PTHR11260 1 218 2.5E-109 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 SUPERFAMILY SSF53067 9 198 5.89E-61 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 PANTHER PTHR32432:SF4 1 392 4.1E-169 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 8.9E-29 T 16-09-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Pfam PF14450 Cell division protein FtsA 11 195 3.9E-11 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Pfam PF14450 Cell division protein FtsA 208 375 6.6E-24 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 SUPERFAMILY SSF53067 200 378 1.3E-45 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Gene3D G3DSA:3.30.420.40 299 353 1.6E-33 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Gene3D G3DSA:3.30.420.40 210 235 1.6E-33 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Gene3D G3DSA:3.30.1490.110 95 157 1.5E-15 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Gene3D G3DSA:3.30.420.40 3 83 7.2E-24 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Gene3D G3DSA:3.30.420.40 158 209 7.2E-24 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 PANTHER PTHR32432 1 392 4.1E-169 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 378 2.7E-160 T 16-09-2016 IPR020823 Cell division protein FtsA GO:0007049 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 PIRSF PIRSF003101 1 411 2.9E-150 T 16-09-2016 IPR020823 Cell division protein FtsA GO:0007049 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 SMART SM00842 10 197 7.8E-104 T 16-09-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Gene3D G3DSA:3.90.640.10 236 298 2.6E-19 T 16-09-2016 BER92_RS03795 ddb16223d1e4ce775642f3e080cd90ca 411 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 411 30.595 T 16-09-2016 IPR020823 Cell division protein FtsA GO:0007049 BER92_RS18220 eed18d425de386792c5a74afc3ecdf0e 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 114 2.4E-26 T 16-09-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS18220 eed18d425de386792c5a74afc3ecdf0e 119 SUPERFAMILY SSF55620 1 116 3.11E-37 T 16-09-2016 BER92_RS18220 eed18d425de386792c5a74afc3ecdf0e 119 TIGRFAM TIGR00526 folB_dom: FolB domain 1 117 4.9E-35 T 16-09-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS18220 eed18d425de386792c5a74afc3ecdf0e 119 Gene3D G3DSA:3.30.1130.10 1 116 5.4E-42 T 16-09-2016 BER92_RS18220 eed18d425de386792c5a74afc3ecdf0e 119 Pfam PF02152 Dihydroneopterin aldolase 4 113 6.5E-32 T 16-09-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS18220 eed18d425de386792c5a74afc3ecdf0e 119 PANTHER PTHR20941 1 119 2.7E-32 T 16-09-2016 BER92_RS18220 eed18d425de386792c5a74afc3ecdf0e 119 SMART SM00905 4 114 1.2E-48 T 16-09-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 Pfam PF01225 Mur ligase family, catalytic domain 24 69 1.2E-7 T 16-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 1 497 32.785 T 16-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 PANTHER PTHR23135 16 422 1.6E-160 T 16-09-2016 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 SUPERFAMILY SSF53623 101 321 1.57E-52 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 PANTHER PTHR23135 442 497 1.6E-160 T 16-09-2016 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 432 4.1E-123 T 16-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 Gene3D G3DSA:3.40.1190.10 86 319 6.4E-65 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 402 5.3E-9 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 SUPERFAMILY SSF63418 2 93 3.27E-20 T 16-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 Gene3D G3DSA:3.40.1390.10 6 80 5.8E-21 T 16-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 PANTHER PTHR23135:SF3 16 422 1.6E-160 T 16-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 PANTHER PTHR23135:SF3 442 497 1.6E-160 T 16-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 Gene3D G3DSA:3.90.190.20 322 433 5.1E-44 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 Gene3D G3DSA:3.90.190.20 473 497 5.1E-44 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 Pfam PF08245 Mur ligase middle domain 107 302 3.4E-42 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03760 95d7488e791db6b32856881f2587995f 507 SUPERFAMILY SSF53244 324 432 2.24E-25 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS06630 07aa71eed7769c298422ee0c8e807444 506 Pfam PF05683 Fumarase C-terminus 289 488 9.7E-80 T 16-09-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BER92_RS06630 07aa71eed7769c298422ee0c8e807444 506 PIRSF PIRSF001394 1 505 1.1E-220 T 16-09-2016 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS06630 07aa71eed7769c298422ee0c8e807444 506 Gene3D G3DSA:3.20.130.10 310 487 1.4E-72 T 16-09-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BER92_RS06630 07aa71eed7769c298422ee0c8e807444 506 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 285 4.0E-63 T 16-09-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 BER92_RS06630 07aa71eed7769c298422ee0c8e807444 506 SUPERFAMILY SSF117457 317 487 3.92E-63 T 16-09-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BER92_RS06630 07aa71eed7769c298422ee0c8e807444 506 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 325 487 1.3E-49 T 16-09-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BER92_RS06630 07aa71eed7769c298422ee0c8e807444 506 Pfam PF05681 Fumarate hydratase (Fumerase) 11 285 2.9E-100 T 16-09-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 BER92_RS06630 07aa71eed7769c298422ee0c8e807444 506 PANTHER PTHR30389 2 506 0.0 T 16-09-2016 BER92_RS06630 07aa71eed7769c298422ee0c8e807444 506 PANTHER PTHR30389:SF1 2 506 0.0 T 16-09-2016 BER92_RS07425 f67debfea29ac95f7d0dd53a6501993c 196 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 18 40 1.2E-7 T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS07425 f67debfea29ac95f7d0dd53a6501993c 196 Pfam PF12019 Type II transport protein GspH 56 157 1.1E-13 T 16-09-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 BER92_RS07425 f67debfea29ac95f7d0dd53a6501993c 196 Gene3D G3DSA:3.30.700.10 20 82 1.6E-9 T 16-09-2016 BER92_RS07425 f67debfea29ac95f7d0dd53a6501993c 196 Pfam PF13633 Prokaryotic N-terminal methylation site 18 43 3.1E-9 T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS07425 f67debfea29ac95f7d0dd53a6501993c 196 SUPERFAMILY SSF54523 20 114 2.35E-21 T 16-09-2016 BER92_RS17630 a8030f8e670760129937dfa0c02570e9 808 Pfam PF00924 Mechanosensitive ion channel 580 777 2.0E-44 T 16-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BER92_RS17630 a8030f8e670760129937dfa0c02570e9 808 Gene3D G3DSA:3.30.70.100 692 777 5.4E-11 T 16-09-2016 BER92_RS17630 a8030f8e670760129937dfa0c02570e9 808 Gene3D G3DSA:2.30.30.60 638 686 3.3E-15 T 16-09-2016 BER92_RS17630 a8030f8e670760129937dfa0c02570e9 808 SUPERFAMILY SSF50182 624 688 3.92E-15 T 16-09-2016 IPR010920 LSM domain BER92_RS17630 a8030f8e670760129937dfa0c02570e9 808 PANTHER PTHR30347 1 807 0.0 T 16-09-2016 BER92_RS17630 a8030f8e670760129937dfa0c02570e9 808 SUPERFAMILY SSF82689 690 783 1.7E-14 T 16-09-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BER92_RS17630 a8030f8e670760129937dfa0c02570e9 808 PANTHER PTHR30347:SF3 1 807 0.0 T 16-09-2016 BER92_RS17630 a8030f8e670760129937dfa0c02570e9 808 Pfam PF12607 Protein of unknown function (DUF3772) 121 181 2.6E-15 T 16-09-2016 IPR022249 Domain of unknown function DUF3772 BER92_RS17630 a8030f8e670760129937dfa0c02570e9 808 SUPERFAMILY SSF82861 538 621 2.22E-12 T 16-09-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BER92_RS18170 e57ee81ae7d4f07ee1574323cd5c3bcd 268 SMART SM00644 38 173 4.2E-26 T 16-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 BER92_RS18170 e57ee81ae7d4f07ee1574323cd5c3bcd 268 Gene3D G3DSA:3.40.80.10 36 191 1.7E-51 T 16-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 BER92_RS18170 e57ee81ae7d4f07ee1574323cd5c3bcd 268 PANTHER PTHR30417 11 254 6.5E-60 T 16-09-2016 BER92_RS18170 e57ee81ae7d4f07ee1574323cd5c3bcd 268 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 49 174 7.8E-22 T 16-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 BER92_RS18170 e57ee81ae7d4f07ee1574323cd5c3bcd 268 SUPERFAMILY SSF55846 36 189 1.23E-46 T 16-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.46 T 16-09-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 16-09-2016 IPR018280 Ribosomal protein S3, conserved site BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 Gene3D G3DSA:3.30.300.20 17 107 2.4E-33 T 16-09-2016 IPR015946 K homology domain-like, alpha/beta BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 SUPERFAMILY SSF54814 2 106 2.56E-37 T 16-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 7.5E-94 T 16-09-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.0E-39 T 16-09-2016 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 Gene3D G3DSA:3.30.1140.32 108 207 4.2E-45 T 16-09-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 SMART SM00322 60 125 1.3E-9 T 16-09-2016 IPR004087 K Homology domain GO:0003676 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 SUPERFAMILY SSF54821 108 206 2.75E-39 T 16-09-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 PANTHER PTHR11760:SF19 2 239 1.8E-136 T 16-09-2016 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 PANTHER PTHR11760 2 239 1.8E-136 T 16-09-2016 BER92_RS05195 b0bf0c7310a2d4db60b81f53ebc38bd0 244 Pfam PF07650 KH domain 38 111 1.5E-19 T 16-09-2016 IPR004044 K Homology domain, type 2 GO:0003723 BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.6E-19 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.6E-19 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 6.6E-19 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.6E-19 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 6.6E-19 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PIRSF PIRSF000126 2 266 6.0E-51 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PANTHER PTHR24322 10 137 1.0E-44 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PANTHER PTHR24322 154 186 1.0E-44 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 SUPERFAMILY SSF51735 8 258 7.06E-54 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 Pfam PF00106 short chain dehydrogenase 9 188 1.5E-36 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 Gene3D G3DSA:3.40.50.720 9 256 2.8E-51 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PANTHER PTHR24322:SF330 10 137 1.0E-44 T 16-09-2016 BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PANTHER PTHR24322:SF330 154 186 1.0E-44 T 16-09-2016 BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 7.7E-8 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 7.7E-8 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 7.7E-8 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07220 9e3406f8ede5c1e7cf7509b09096c140 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 191 2.3E-4 T 16-09-2016 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 Pfam PF14310 Fibronectin type III-like domain 641 709 6.4E-19 T 16-09-2016 IPR026891 Fibronectin type III-like domain BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 14 332 3.1E-70 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 SUPERFAMILY SSF52279 372 607 1.83E-51 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 Gene3D G3DSA:3.40.50.1700 358 607 9.8E-69 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 372 604 2.3E-51 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 Gene3D G3DSA:3.20.20.300 2 350 1.4E-106 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 SMART SM01217 641 710 3.3E-29 T 16-09-2016 IPR026891 Fibronectin type III-like domain BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 PANTHER PTHR30620 4 29 1.1E-290 T 16-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 PANTHER PTHR30620 71 723 1.1E-290 T 16-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 SUPERFAMILY SSF51445 3 371 1.26E-100 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 PANTHER PTHR30620:SF5 4 29 1.1E-290 T 16-09-2016 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 PANTHER PTHR30620:SF5 71 723 1.1E-290 T 16-09-2016 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 253 270 - T 16-09-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 253 271 4.5E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 81 97 4.5E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 100 119 4.5E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 146 162 4.5E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS18215 d3ec51688e6c92946a39ee590b5eaa18 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 183 199 4.5E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS01735 9ab1c78e03125305ade3227f322e6794 540 SUPERFAMILY SSF51905 5 191 1.61E-29 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01735 9ab1c78e03125305ade3227f322e6794 540 SUPERFAMILY SSF51905 306 391 1.61E-29 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01735 9ab1c78e03125305ade3227f322e6794 540 Pfam PF04820 Tryptophan halogenase 108 348 9.2E-10 T 16-09-2016 IPR006905 Tryptophan halogenase BER92_RS01735 9ab1c78e03125305ade3227f322e6794 540 Pfam PF04820 Tryptophan halogenase 7 84 2.2E-4 T 16-09-2016 IPR006905 Tryptophan halogenase BER92_RS01735 9ab1c78e03125305ade3227f322e6794 540 PANTHER PTHR10617 1 463 4.9E-172 T 16-09-2016 BER92_RS01735 9ab1c78e03125305ade3227f322e6794 540 PANTHER PTHR10617:SF111 1 463 4.9E-172 T 16-09-2016 BER92_RS01735 9ab1c78e03125305ade3227f322e6794 540 Gene3D G3DSA:3.50.50.60 4 190 1.1E-21 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01735 9ab1c78e03125305ade3227f322e6794 540 Gene3D G3DSA:3.50.50.60 301 331 1.1E-21 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS05980 222d02c6db95ba0fd15287ae6874eb81 330 Pfam PF00990 Diguanylate cyclase, GGDEF domain 166 318 1.3E-36 T 16-09-2016 IPR000160 GGDEF domain BER92_RS05980 222d02c6db95ba0fd15287ae6874eb81 330 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 162 323 1.3E-40 T 16-09-2016 IPR000160 GGDEF domain BER92_RS05980 222d02c6db95ba0fd15287ae6874eb81 330 Gene3D G3DSA:3.30.70.270 168 326 6.2E-45 T 16-09-2016 BER92_RS05980 222d02c6db95ba0fd15287ae6874eb81 330 SUPERFAMILY SSF55073 171 324 1.41E-40 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS05980 222d02c6db95ba0fd15287ae6874eb81 330 SMART SM00267 153 323 5.2E-50 T 16-09-2016 IPR000160 GGDEF domain BER92_RS05980 222d02c6db95ba0fd15287ae6874eb81 330 PANTHER PTHR10799 136 329 7.9E-23 T 16-09-2016 BER92_RS05980 222d02c6db95ba0fd15287ae6874eb81 330 PANTHER PTHR10799:SF750 136 329 7.9E-23 T 16-09-2016 BER92_RS13805 14286d0ae694fdcd2e01d429db3f2adc 322 PANTHER PTHR35604 2 322 1.3E-239 T 16-09-2016 BER92_RS13805 14286d0ae694fdcd2e01d429db3f2adc 322 Pfam PF01609 Transposase DDE domain 135 310 3.8E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS13805 14286d0ae694fdcd2e01d429db3f2adc 322 PANTHER PTHR35604:SF2 2 322 1.3E-239 T 16-09-2016 BER92_RS13805 14286d0ae694fdcd2e01d429db3f2adc 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 SMART SM00382 405 596 9.9E-19 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 PANTHER PTHR24221:SF157 21 73 2.6E-172 T 16-09-2016 BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 PANTHER PTHR24221:SF157 92 625 2.6E-172 T 16-09-2016 BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 SUPERFAMILY SSF52540 371 620 6.04E-74 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 Pfam PF00005 ABC transporter 397 550 1.8E-34 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 SUPERFAMILY SSF90123 30 342 6.67E-26 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 ProSitePatterns PS00211 ABC transporters family signature. 522 536 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 PANTHER PTHR24221 21 73 2.6E-172 T 16-09-2016 BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 PANTHER PTHR24221 92 625 2.6E-172 T 16-09-2016 BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 Gene3D G3DSA:1.20.1560.10 34 360 1.1E-17 T 16-09-2016 BER92_RS06625 f050546d3d990b35cebed6fb9da2a2ee 625 Gene3D G3DSA:3.40.50.300 381 614 6.9E-72 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02535 d401232a74462ba5385990e9883356f7 231 PANTHER PTHR38074:SF1 1 228 1.0E-89 T 16-09-2016 BER92_RS02535 d401232a74462ba5385990e9883356f7 231 PANTHER PTHR38074 1 228 1.0E-89 T 16-09-2016 BER92_RS02535 d401232a74462ba5385990e9883356f7 231 Pfam PF01987 Mitochondrial biogenesis AIM24 27 221 1.4E-31 T 16-09-2016 IPR002838 Mitochondrial biogenesis protein AIM24 BER92_RS02535 d401232a74462ba5385990e9883356f7 231 SUPERFAMILY SSF51219 26 228 3.14E-50 T 16-09-2016 IPR016031 Tryptophan RNA-binding attenuator protein-like domain BER92_RS02535 d401232a74462ba5385990e9883356f7 231 Gene3D G3DSA:3.60.160.10 26 228 5.9E-40 T 16-09-2016 IPR002838 Mitochondrial biogenesis protein AIM24 BER92_RS18350 f1fcb8edd3ec33cc3973e31e5d2e84a2 266 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 16-09-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 BER92_RS18350 f1fcb8edd3ec33cc3973e31e5d2e84a2 266 SUPERFAMILY SSF56219 1 264 2.75E-74 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS18350 f1fcb8edd3ec33cc3973e31e5d2e84a2 266 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 264 6.6E-71 T 16-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 BER92_RS18350 f1fcb8edd3ec33cc3973e31e5d2e84a2 266 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 257 4.5E-24 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS18350 f1fcb8edd3ec33cc3973e31e5d2e84a2 266 Gene3D G3DSA:3.60.10.10 1 264 2.4E-89 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS18350 f1fcb8edd3ec33cc3973e31e5d2e84a2 266 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 262 4.3E-64 T 16-09-2016 BER92_RS18350 f1fcb8edd3ec33cc3973e31e5d2e84a2 266 PANTHER PTHR22748 1 265 4.7E-102 T 16-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 ProSitePatterns PS00352 'Cold-shock' domain signature. 20 38 - T 16-09-2016 IPR019844 Cold-shock conserved site BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 PRINTS PR00050 Cold shock protein signature 29 38 2.5E-17 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 PRINTS PR00050 Cold shock protein signature 44 62 2.5E-17 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 PRINTS PR00050 Cold shock protein signature 9 24 2.5E-17 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 SMART SM00357 8 71 2.7E-28 T 16-09-2016 IPR011129 Cold shock protein GO:0003676 BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 SUPERFAMILY SSF50249 4 70 1.37E-23 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 PIRSF PIRSF002599 2 71 2.3E-22 T 16-09-2016 IPR012156 Cold shock, CspA GO:0003676 BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 Pfam PF00313 'Cold-shock' DNA-binding domain 8 70 1.8E-28 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 PANTHER PTHR11544 1 71 9.6E-39 T 16-09-2016 BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 PANTHER PTHR11544:SF63 1 71 9.6E-39 T 16-09-2016 BER92_RS06655 140b039aab8ccf9363b3cd739dc7ccf0 71 Gene3D G3DSA:2.40.50.140 7 70 1.2E-29 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS06285 3f69a3aa8f96438e69b7b5c0442a8115 785 SUPERFAMILY SSF48208 274 643 7.82E-16 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS06285 3f69a3aa8f96438e69b7b5c0442a8115 785 SUPERFAMILY SSF48208 671 717 7.82E-16 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS07560 d3a4975fa7be3e2811e342abe19d2fdf 454 SUPERFAMILY SSF53720 3 453 1.57E-134 T 16-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 BER92_RS07560 d3a4975fa7be3e2811e342abe19d2fdf 454 PANTHER PTHR11699:SF28 2 453 1.3E-253 T 16-09-2016 BER92_RS07560 d3a4975fa7be3e2811e342abe19d2fdf 454 Gene3D G3DSA:3.40.309.10 242 426 1.5E-58 T 16-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 BER92_RS07560 d3a4975fa7be3e2811e342abe19d2fdf 454 Pfam PF00171 Aldehyde dehydrogenase family 3 451 1.5E-132 T 16-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 BER92_RS07560 d3a4975fa7be3e2811e342abe19d2fdf 454 PANTHER PTHR11699 2 453 1.3E-253 T 16-09-2016 BER92_RS07560 d3a4975fa7be3e2811e342abe19d2fdf 454 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 255 266 - T 16-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 BER92_RS07560 d3a4975fa7be3e2811e342abe19d2fdf 454 Gene3D G3DSA:3.40.605.10 3 241 5.7E-69 T 16-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 BER92_RS07940 ee1899a74abbdb720017d58e8fbfdc93 91 Hamap MF_00460 Protein RnfH [rnfH]. 1 86 19.136 T 16-09-2016 IPR005346 RnfH protein BER92_RS07940 ee1899a74abbdb720017d58e8fbfdc93 91 Gene3D G3DSA:3.10.20.280 1 80 5.0E-24 T 16-09-2016 IPR005346 RnfH protein BER92_RS07940 ee1899a74abbdb720017d58e8fbfdc93 91 SUPERFAMILY SSF54285 1 70 7.06E-16 T 16-09-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BER92_RS07940 ee1899a74abbdb720017d58e8fbfdc93 91 PANTHER PTHR37483 1 89 2.7E-26 T 16-09-2016 BER92_RS07940 ee1899a74abbdb720017d58e8fbfdc93 91 PANTHER PTHR37483:SF1 1 89 2.7E-26 T 16-09-2016 BER92_RS07940 ee1899a74abbdb720017d58e8fbfdc93 91 Pfam PF03658 RnfH family Ubiquitin 1 78 1.3E-20 T 16-09-2016 IPR005346 RnfH protein BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 SUPERFAMILY SSF109604 26 210 5.02E-71 T 16-09-2016 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 Pfam PF13291 ACT domain 646 722 3.6E-16 T 16-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 SMART SM00954 255 365 1.5E-58 T 16-09-2016 IPR007685 RelA/SpoT GO:0015969 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 SUPERFAMILY SSF81301 201 412 1.59E-56 T 16-09-2016 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 Gene3D G3DSA:3.30.70.260 648 720 1.4E-10 T 16-09-2016 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 SUPERFAMILY SSF81271 395 467 4.36E-18 T 16-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 Gene3D G3DSA:3.30.460.10 198 344 4.5E-40 T 16-09-2016 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 Pfam PF13328 HD domain 46 195 9.3E-52 T 16-09-2016 IPR003607 HD/PDEase domain BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 46 718 1.0E-224 T 16-09-2016 IPR004811 RelA/SpoT family GO:0015969 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 PANTHER PTHR21262:SF0 18 723 0.0 T 16-09-2016 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 PANTHER PTHR21262 18 723 0.0 T 16-09-2016 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 Pfam PF02824 TGS domain 408 467 6.4E-16 T 16-09-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 SMART SM00471 61 173 5.3E-11 T 16-09-2016 IPR003607 HD/PDEase domain BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 Gene3D G3DSA:3.10.20.30 407 469 1.2E-19 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 Pfam PF04607 Region found in RelA / SpoT proteins 255 363 1.3E-32 T 16-09-2016 IPR007685 RelA/SpoT GO:0015969 BER92_RS03590 22246273f66d0134624a441e3f6ed851 723 SUPERFAMILY SSF55021 651 721 1.07E-7 T 16-09-2016 BER92_RS17070 6015255831e1f54e049b308f2f5742d5 414 PANTHER PTHR21180:SF9 135 409 3.0E-138 T 16-09-2016 IPR023874 DNA modification/repair radical SAM protein, putative BER92_RS17070 6015255831e1f54e049b308f2f5742d5 414 Gene3D G3DSA:3.80.30.20 64 288 1.3E-10 T 16-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe BER92_RS17070 6015255831e1f54e049b308f2f5742d5 414 SMART SM00729 56 287 0.0019 T 16-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 BER92_RS17070 6015255831e1f54e049b308f2f5742d5 414 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 3 406 2.9E-168 T 16-09-2016 IPR023874 DNA modification/repair radical SAM protein, putative BER92_RS17070 6015255831e1f54e049b308f2f5742d5 414 SUPERFAMILY SSF102114 45 184 1.31E-15 T 16-09-2016 BER92_RS17070 6015255831e1f54e049b308f2f5742d5 414 PANTHER PTHR21180 135 409 3.0E-138 T 16-09-2016 BER92_RS17070 6015255831e1f54e049b308f2f5742d5 414 SUPERFAMILY SSF47781 311 382 1.11E-7 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS17070 6015255831e1f54e049b308f2f5742d5 414 Pfam PF04055 Radical SAM superfamily 62 193 1.6E-7 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 7 122 4.8E-27 T 16-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 Gene3D G3DSA:3.40.50.720 4 141 1.5E-38 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 SMART SM00859 6 127 9.5E-31 T 16-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 130 146 - T 16-09-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 5 315 30.003 T 16-09-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 SUPERFAMILY SSF51735 5 151 1.14E-41 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 Gene3D G3DSA:3.30.360.10 142 289 3.0E-36 T 16-09-2016 BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 SUPERFAMILY SSF55347 135 289 2.52E-35 T 16-09-2016 BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 6 315 1.6E-98 T 16-09-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11865 f94ccfb3ccd0aa168c343cc27747108d 316 PANTHER PTHR32338 6 310 8.2E-106 T 16-09-2016 BER92_RS03635 24b034da6d3ee02cd9aa648306889b69 352 Gene3D G3DSA:3.30.420.40 8 93 3.6E-4 T 16-09-2016 BER92_RS03635 24b034da6d3ee02cd9aa648306889b69 352 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 8 351 6.6E-141 T 16-09-2016 IPR005883 Type IV pilus assembly protein PilM BER92_RS03635 24b034da6d3ee02cd9aa648306889b69 352 SUPERFAMILY SSF53067 60 173 7.51E-8 T 16-09-2016 BER92_RS03635 24b034da6d3ee02cd9aa648306889b69 352 SUPERFAMILY SSF53067 190 350 2.55E-24 T 16-09-2016 BER92_RS03635 24b034da6d3ee02cd9aa648306889b69 352 PANTHER PTHR32432 1 351 1.4E-96 T 16-09-2016 BER92_RS03635 24b034da6d3ee02cd9aa648306889b69 352 PIRSF PIRSF019169 1 352 1.7E-128 T 16-09-2016 IPR005883 Type IV pilus assembly protein PilM BER92_RS03635 24b034da6d3ee02cd9aa648306889b69 352 PANTHER PTHR32432:SF3 1 351 1.4E-96 T 16-09-2016 BER92_RS03635 24b034da6d3ee02cd9aa648306889b69 352 Pfam PF11104 Type IV pilus assembly protein PilM; 13 351 1.5E-134 T 16-09-2016 IPR005883 Type IV pilus assembly protein PilM BER92_RS03635 24b034da6d3ee02cd9aa648306889b69 352 Gene3D G3DSA:3.30.420.40 194 313 7.6E-26 T 16-09-2016 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 PANTHER PTHR11624 244 634 7.6E-286 T 16-09-2016 IPR033247 Transketolase family BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 PANTHER PTHR11624 23 219 7.6E-286 T 16-09-2016 IPR033247 Transketolase family BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 ProSitePatterns PS00802 Transketolase signature 2. 428 444 - T 16-09-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 Gene3D G3DSA:3.40.50.920 499 620 3.2E-29 T 16-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 ProSitePatterns PS00801 Transketolase signature 1. 35 54 - T 16-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 SUPERFAMILY SSF52518 7 202 4.89E-72 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 SUPERFAMILY SSF52518 246 384 4.89E-72 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 10 285 6.3E-115 T 16-09-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 9 623 44.834 T 16-09-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 Gene3D G3DSA:3.40.50.970 245 336 1.2E-69 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 Gene3D G3DSA:3.40.50.970 25 202 1.2E-69 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 SMART SM00861 322 486 5.6E-57 T 16-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 Pfam PF02780 Transketolase, C-terminal domain 498 614 6.8E-23 T 16-09-2016 IPR033248 Transketolase, C-terminal domain BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 10 620 3.6E-255 T 16-09-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 SUPERFAMILY SSF52518 320 506 8.51E-54 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 Pfam PF02779 Transketolase, pyrimidine binding domain 321 481 1.7E-35 T 16-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 SUPERFAMILY SSF52922 494 620 1.13E-27 T 16-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 PANTHER PTHR11624:SF20 244 634 7.6E-286 T 16-09-2016 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 PANTHER PTHR11624:SF20 23 219 7.6E-286 T 16-09-2016 BER92_RS06105 e8a45454375c46ba3dbfe04c8e430a52 638 Gene3D G3DSA:3.40.50.970 337 498 1.0E-33 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 SMART SM01130 6 295 1.2E-92 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 Gene3D G3DSA:3.20.20.70 7 293 4.6E-89 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 PIRSF PIRSF001365 4 300 6.6E-75 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 PANTHER PTHR12128:SF15 7 286 1.9E-79 T 16-09-2016 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 Pfam PF00701 Dihydrodipicolinate synthetase family 8 292 1.1E-58 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 PANTHER PTHR12128 7 286 1.9E-79 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 108 124 2.7E-12 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 2.7E-12 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 2.7E-12 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 2.7E-12 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS06220 0336143d284cc6bc6ebda78c1bd07a9a 301 SUPERFAMILY SSF51569 6 293 6.38E-84 T 16-09-2016 BER92_RS04390 35cb9b496f0b6ef123abf249b16be5a8 373 Pfam PF05137 Fimbrial assembly protein (PilN) 287 358 9.7E-14 T 16-09-2016 IPR007813 Fimbrial assembly PilN BER92_RS04390 35cb9b496f0b6ef123abf249b16be5a8 373 PANTHER PTHR40278 4 373 1.5E-116 T 16-09-2016 BER92_RS04390 35cb9b496f0b6ef123abf249b16be5a8 373 PANTHER PTHR40278:SF1 4 373 1.5E-116 T 16-09-2016 BER92_RS04390 35cb9b496f0b6ef123abf249b16be5a8 373 SUPERFAMILY SSF53067 69 185 8.93E-8 T 16-09-2016 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 6.0E-52 T 16-09-2016 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 Pfam PF03144 Elongation factor Tu domain 2 205 275 1.2E-9 T 16-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 Gene3D G3DSA:3.30.70.240 401 489 6.3E-19 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 SUPERFAMILY SSF54980 292 370 1.08E-18 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 Hamap MF_00071 Elongation factor 4 [lepA]. 1 596 296.719 T 16-09-2016 IPR006297 Elongation factor 4 GO:0005525 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 PANTHER PTHR23115:SF175 397 595 2.3E-271 T 16-09-2016 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 PANTHER PTHR23115:SF175 2 373 2.3E-271 T 16-09-2016 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 TIGRFAM TIGR01393 lepA: elongation factor 4 2 595 5.6E-291 T 16-09-2016 IPR006297 Elongation factor 4 GO:0005525 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 SUPERFAMILY SSF52540 2 220 1.25E-53 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 172 1.8E-16 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 SUPERFAMILY SSF50447 190 281 7.54E-19 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 Pfam PF00679 Elongation factor G C-terminus 399 477 4.3E-18 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 16-09-2016 IPR031157 Tr-type G domain, conserved site BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 PANTHER PTHR23115 397 595 2.3E-271 T 16-09-2016 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 PANTHER PTHR23115 2 373 2.3E-271 T 16-09-2016 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 Pfam PF06421 GTP-binding protein LepA C-terminus 487 593 3.5E-51 T 16-09-2016 IPR013842 GTP-binding protein LepA, C-terminal BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 Gene3D G3DSA:2.40.30.10 194 290 1.3E-22 T 16-09-2016 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 SMART SM00838 398 486 0.0041 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 PRINTS PR00315 GTP-binding elongation factor signature 49 57 2.4E-14 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 PRINTS PR00315 GTP-binding elongation factor signature 90 101 2.4E-14 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 PRINTS PR00315 GTP-binding elongation factor signature 126 135 2.4E-14 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 PRINTS PR00315 GTP-binding elongation factor signature 74 84 2.4E-14 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 PRINTS PR00315 GTP-binding elongation factor signature 6 19 2.4E-14 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 Gene3D G3DSA:3.40.50.300 2 193 1.4E-57 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 Gene3D G3DSA:3.30.70.870 292 369 6.2E-26 T 16-09-2016 BER92_RS06960 7944403591fe8bcaa090f512c02b014b 596 SUPERFAMILY SSF54980 399 493 9.11E-23 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS15120 244ed52b2a049ac5447151167832f51c 710 Pfam PF00593 TonB dependent receptor 468 709 4.3E-28 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS15120 244ed52b2a049ac5447151167832f51c 710 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 65 710 1.7E-79 T 16-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 BER92_RS15120 244ed52b2a049ac5447151167832f51c 710 Gene3D G3DSA:2.170.130.10 63 174 1.9E-29 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS15120 244ed52b2a049ac5447151167832f51c 710 PANTHER PTHR32552 346 710 1.3E-45 T 16-09-2016 BER92_RS15120 244ed52b2a049ac5447151167832f51c 710 PANTHER PTHR32552 4 324 1.3E-45 T 16-09-2016 BER92_RS15120 244ed52b2a049ac5447151167832f51c 710 SUPERFAMILY SSF56935 39 710 1.62E-103 T 16-09-2016 BER92_RS15120 244ed52b2a049ac5447151167832f51c 710 Gene3D G3DSA:2.40.170.20 175 710 4.5E-92 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS15120 244ed52b2a049ac5447151167832f51c 710 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 173 1.6E-21 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 Pfam PF00158 Sigma-54 interaction domain 220 385 1.8E-59 T 16-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 Gene3D G3DSA:3.40.50.10660 102 180 1.5E-33 T 16-09-2016 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 SUPERFAMILY SSF52540 219 446 2.93E-57 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 Gene3D G3DSA:1.10.8.60 392 437 3.9E-13 T 16-09-2016 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 243 256 - T 16-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 Gene3D G3DSA:3.40.50.2300 9 101 3.7E-42 T 16-09-2016 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 Gene3D G3DSA:3.40.50.300 216 391 1.2E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 PANTHER PTHR32071 20 525 1.8E-151 T 16-09-2016 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 SMART SM00382 239 382 2.2E-11 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 PANTHER PTHR32071:SF32 20 525 1.8E-151 T 16-09-2016 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 510 530 4.1E-6 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 493 510 4.1E-6 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR 14 526 2.8E-232 T 16-09-2016 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0005737|GO:0019629 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 Gene3D G3DSA:1.10.10.60 438 526 6.6E-13 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 SUPERFAMILY SSF159800 15 195 7.45E-45 T 16-09-2016 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 SUPERFAMILY SSF46689 428 524 1.64E-7 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 Pfam PF06506 Propionate catabolism activator 37 195 6.1E-44 T 16-09-2016 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 BER92_RS13945 d7208423c66845b5779f1f953b95c709 533 Pfam PF02954 Bacterial regulatory protein, Fis family 496 525 1.4E-8 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 164 176 - T 16-09-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 Gene3D G3DSA:1.20.1250.20 31 221 1.0E-15 T 16-09-2016 BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 PANTHER PTHR11654:SF119 28 243 6.2E-138 T 16-09-2016 BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 Pfam PF00854 POT family 105 464 1.1E-55 T 16-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 PANTHER PTHR11654 281 462 6.2E-138 T 16-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 25 502 1.8E-104 T 16-09-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 SUPERFAMILY SSF103473 11 220 3.79E-22 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 SUPERFAMILY SSF103473 240 501 1.44E-10 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 PANTHER PTHR11654:SF119 281 462 6.2E-138 T 16-09-2016 BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 PANTHER PTHR11654 28 243 6.2E-138 T 16-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS00545 c38a00e1cfa5b4c7642b0862fd4a63a4 506 Gene3D G3DSA:1.20.1250.20 302 495 7.9E-7 T 16-09-2016 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 117 143 1.1E-61 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 326 345 1.1E-61 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 354 371 1.1E-61 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 145 164 1.1E-61 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 170 191 1.1E-61 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 222 245 1.1E-61 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 386 405 1.1E-61 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 21 442 39.252 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 PANTHER PTHR11706 7 439 2.1E-205 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 37 410 1.3E-120 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 Pfam PF01566 Natural resistance-associated macrophage protein 58 414 4.6E-130 T 16-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 BER92_RS11745 0fa5104841c006b78e8363c59a926091 444 PANTHER PTHR11706:SF33 7 439 2.1E-205 T 16-09-2016 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 SMART SM00841 131 186 4.5E-32 T 16-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 Gene3D G3DSA:2.40.50.140 66 129 2.3E-23 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 1.6E-25 T 16-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 16-09-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 1.1E-19 T 16-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 Gene3D G3DSA:2.30.30.30 6 65 4.9E-23 T 16-09-2016 IPR014722 Ribosomal protein L2 domain 2 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 6 62 6.1E-21 T 16-09-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 SUPERFAMILY SSF50249 69 128 1.97E-15 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 SMART SM01185 69 123 2.9E-19 T 16-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 SUPERFAMILY SSF50249 130 187 4.11E-18 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 SUPERFAMILY SSF50104 5 65 4.33E-17 T 16-09-2016 IPR008991 Translation protein SH3-like domain BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 PANTHER PTHR30053 1 188 5.0E-83 T 16-09-2016 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 TIGRFAM TIGR00038 efp: translation elongation factor P 6 187 5.8E-73 T 16-09-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 Gene3D G3DSA:2.40.50.140 130 187 3.4E-28 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 PIRSF PIRSF005901 2 188 7.3E-63 T 16-09-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 BER92_RS11990 51b0f693f19b8d25851f1289665f4895 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 49.35 T 16-09-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 PANTHER PTHR11941:SF53 1 83 1.2E-94 T 16-09-2016 BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 PANTHER PTHR11941:SF53 283 356 1.2E-94 T 16-09-2016 BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 Gene3D G3DSA:3.90.226.10 22 214 4.0E-48 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 PANTHER PTHR11941 1 83 1.2E-94 T 16-09-2016 BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 PANTHER PTHR11941 283 356 1.2E-94 T 16-09-2016 BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 SUPERFAMILY SSF52096 22 214 2.22E-57 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 SUPERFAMILY SSF52096 286 358 2.22E-57 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 PANTHER PTHR11941:SF53 103 214 1.2E-94 T 16-09-2016 BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 Pfam PF16113 Enoyl-CoA hydratase/isomerase 25 373 1.6E-108 T 16-09-2016 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 BER92_RS06775 5628e5409a60ef660e5cb32342030186 395 PANTHER PTHR11941 103 214 1.2E-94 T 16-09-2016 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 16-09-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 59 88 2.7E-38 T 16-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 234 261 2.7E-38 T 16-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 24 2.7E-38 T 16-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 158 186 2.7E-38 T 16-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 112 137 2.7E-38 T 16-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 SMART SM01350 169 313 2.2E-6 T 16-09-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 Gene3D G3DSA:1.10.1040.10 171 289 1.3E-34 T 16-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 169 280 2.5E-22 T 16-09-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 153 1.8E-41 T 16-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 299 1.0E-116 T 16-09-2016 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 SUPERFAMILY SSF51735 1 154 5.55E-45 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 PANTHER PTHR11811:SF28 1 298 9.3E-170 T 16-09-2016 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 Gene3D G3DSA:3.40.50.720 1 170 1.5E-47 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 SUPERFAMILY SSF48179 167 298 2.24E-41 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS02870 2f6d469d6453ed0a5c011dbed4927d2d 313 PANTHER PTHR11811 1 298 9.3E-170 T 16-09-2016 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 PANTHER PTHR22855 1 293 3.3E-167 T 16-09-2016 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 PANTHER PTHR22855:SF17 1 293 3.3E-167 T 16-09-2016 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 Pfam PF01039 Carboxyl transferase domain 110 243 1.4E-16 T 16-09-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 204 221 4.9E-42 T 16-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 255 264 4.9E-42 T 16-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 233 244 4.9E-42 T 16-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 167 185 4.9E-42 T 16-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 133 147 4.9E-42 T 16-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 Gene3D G3DSA:3.90.226.10 21 288 4.3E-74 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 287 1.8E-126 T 16-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 285 37.774 T 16-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS07185 c6574cb54b938c425d9c289c8112ba42 294 SUPERFAMILY SSF52096 28 288 3.05E-85 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS09125 aeea18c0fa1f77af9ab7c4a411bd0f1b 289 Pfam PF06504 Replication protein C (RepC) 3 273 2.4E-145 T 16-09-2016 IPR010522 Replication protein C, bacterial BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PANTHER PTHR24322:SF564 60 189 8.6E-72 T 16-09-2016 BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 193 9.7E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 9.7E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 144 9.7E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 192 220 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 62 297 3.0E-59 T 16-09-2016 BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PANTHER PTHR24322 205 237 8.6E-72 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PANTHER PTHR24322 60 189 8.6E-72 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PANTHER PTHR24322:SF564 205 237 8.6E-72 T 16-09-2016 BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 195 1.2E-32 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 261 281 1.2E-32 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 144 1.2E-32 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 224 1.2E-32 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 243 1.2E-32 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 57 74 1.2E-32 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 Gene3D G3DSA:3.40.50.720 51 298 2.9E-81 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS05640 f61b7b7616e8c5dad8aa50b6f6124030 300 SUPERFAMILY SSF51735 54 298 1.16E-78 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS04910 9b92154169c2fce559ba559cbc3d05c0 183 PANTHER PTHR11839 37 176 6.6E-27 T 16-09-2016 BER92_RS04910 9b92154169c2fce559ba559cbc3d05c0 183 Gene3D G3DSA:3.90.79.10 10 175 1.1E-37 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS04910 9b92154169c2fce559ba559cbc3d05c0 183 Pfam PF00293 NUDIX domain 37 103 1.3E-7 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS04910 9b92154169c2fce559ba559cbc3d05c0 183 SUPERFAMILY SSF55811 5 172 3.11E-28 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS18800 f4d1820ed209af06ff1b538c71a859b4 382 SUPERFAMILY SSF51430 59 368 2.88E-54 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS18800 f4d1820ed209af06ff1b538c71a859b4 382 PANTHER PTHR11732 60 185 6.8E-127 T 16-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta BER92_RS18800 f4d1820ed209af06ff1b538c71a859b4 382 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 27 8.2E-4 T 16-09-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BER92_RS18800 f4d1820ed209af06ff1b538c71a859b4 382 PANTHER PTHR11732:SF241 60 185 6.8E-127 T 16-09-2016 BER92_RS18800 f4d1820ed209af06ff1b538c71a859b4 382 PANTHER PTHR11732:SF241 205 382 6.8E-127 T 16-09-2016 BER92_RS18800 f4d1820ed209af06ff1b538c71a859b4 382 Pfam PF00248 Aldo/keto reductase family 61 368 2.0E-43 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS18800 f4d1820ed209af06ff1b538c71a859b4 382 PANTHER PTHR11732 205 382 6.8E-127 T 16-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta BER92_RS18800 f4d1820ed209af06ff1b538c71a859b4 382 Gene3D G3DSA:3.20.20.100 59 368 1.4E-46 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS08615 032fc6a3702c2fdfa26d8da489fc2711 87 Gene3D G3DSA:1.10.10.60 7 83 4.5E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS08615 032fc6a3702c2fdfa26d8da489fc2711 87 Pfam PF01527 Transposase 2 70 7.1E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS08615 032fc6a3702c2fdfa26d8da489fc2711 87 SUPERFAMILY SSF46689 2 82 6.27E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS08615 032fc6a3702c2fdfa26d8da489fc2711 87 PANTHER PTHR33609 1 87 8.8E-43 T 16-09-2016 BER92_RS06335 032fc6a3702c2fdfa26d8da489fc2711 87 Gene3D G3DSA:1.10.10.60 7 83 4.5E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06335 032fc6a3702c2fdfa26d8da489fc2711 87 Pfam PF01527 Transposase 2 70 7.1E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS06335 032fc6a3702c2fdfa26d8da489fc2711 87 SUPERFAMILY SSF46689 2 82 6.27E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06335 032fc6a3702c2fdfa26d8da489fc2711 87 PANTHER PTHR33609 1 87 8.8E-43 T 16-09-2016 BER92_RS09050 032fc6a3702c2fdfa26d8da489fc2711 87 Gene3D G3DSA:1.10.10.60 7 83 4.5E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09050 032fc6a3702c2fdfa26d8da489fc2711 87 Pfam PF01527 Transposase 2 70 7.1E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS09050 032fc6a3702c2fdfa26d8da489fc2711 87 SUPERFAMILY SSF46689 2 82 6.27E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09050 032fc6a3702c2fdfa26d8da489fc2711 87 PANTHER PTHR33609 1 87 8.8E-43 T 16-09-2016 BER92_RS10560 032fc6a3702c2fdfa26d8da489fc2711 87 Gene3D G3DSA:1.10.10.60 7 83 4.5E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10560 032fc6a3702c2fdfa26d8da489fc2711 87 Pfam PF01527 Transposase 2 70 7.1E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS10560 032fc6a3702c2fdfa26d8da489fc2711 87 SUPERFAMILY SSF46689 2 82 6.27E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10560 032fc6a3702c2fdfa26d8da489fc2711 87 PANTHER PTHR33609 1 87 8.8E-43 T 16-09-2016 BER92_RS11340 44b3ad7499eb8f51a16d81c82c5e7177 327 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 10 142 9.3E-35 T 16-09-2016 IPR017748 Type VI secretion system-associated, BMAA0400 BER92_RS11340 44b3ad7499eb8f51a16d81c82c5e7177 327 Gene3D G3DSA:3.40.1730.10 9 182 7.2E-31 T 16-09-2016 BER92_RS11340 44b3ad7499eb8f51a16d81c82c5e7177 327 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 11 138 3.9E-23 T 16-09-2016 IPR017748 Type VI secretion system-associated, BMAA0400 BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 PANTHER PTHR23416:SF8 1 255 1.3E-123 T 16-09-2016 BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 Gene3D G3DSA:2.160.10.10 6 188 1.2E-45 T 16-09-2016 BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 260 2.4E-25 T 16-09-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 263 44.806 T 16-09-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 Gene3D G3DSA:1.20.1180.10 198 263 8.9E-23 T 16-09-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 261 1.3E-102 T 16-09-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 PANTHER PTHR23416 1 255 1.3E-123 T 16-09-2016 BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 SUPERFAMILY SSF51161 2 262 2.07E-72 T 16-09-2016 IPR011004 Trimeric LpxA-like BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 5.8E-6 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS06375 6869580ee8096b0fadd5e913da158fc4 263 PIRSF PIRSF000456 5 263 1.0E-97 T 16-09-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 BER92_RS01845 7abe236f15caac046f4a3d83a7a69a1b 716 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 274 513 2.7E-25 T 16-09-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BER92_RS01845 7abe236f15caac046f4a3d83a7a69a1b 716 Gene3D G3DSA:3.20.20.190 271 406 9.3E-22 T 16-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 BER92_RS01845 7abe236f15caac046f4a3d83a7a69a1b 716 PANTHER PTHR23344 256 400 1.8E-32 T 16-09-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 BER92_RS01845 7abe236f15caac046f4a3d83a7a69a1b 716 SUPERFAMILY SSF51695 274 398 7.74E-22 T 16-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 BER92_RS01845 7abe236f15caac046f4a3d83a7a69a1b 716 PANTHER PTHR23344:SF25 256 400 1.8E-32 T 16-09-2016 BER92_RS08360 b2d788836357982e1fa11c7f64633252 258 Pfam PF01513 ATP-NAD kinase 34 220 1.2E-15 T 16-09-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 BER92_RS08360 b2d788836357982e1fa11c7f64633252 258 Gene3D G3DSA:2.60.200.30 113 230 3.5E-27 T 16-09-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 BER92_RS08360 b2d788836357982e1fa11c7f64633252 258 PANTHER PTHR20275:SF7 6 258 9.1E-142 T 16-09-2016 BER92_RS08360 b2d788836357982e1fa11c7f64633252 258 Hamap MF_00361 NAD kinase [nadK]. 5 257 21.29 T 16-09-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 BER92_RS08360 b2d788836357982e1fa11c7f64633252 258 Gene3D G3DSA:3.40.50.10330 26 112 1.2E-16 T 16-09-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 BER92_RS08360 b2d788836357982e1fa11c7f64633252 258 PANTHER PTHR20275 6 258 9.1E-142 T 16-09-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 BER92_RS08360 b2d788836357982e1fa11c7f64633252 258 SUPERFAMILY SSF111331 28 245 9.29E-55 T 16-09-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 PANTHER PTHR23501 10 514 1.6E-274 T 16-09-2016 BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 PRINTS PR01036 Tetracycline resistance protein TetB signature 32 56 1.6E-5 T 16-09-2016 BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 PRINTS PR01036 Tetracycline resistance protein TetB signature 153 177 1.6E-5 T 16-09-2016 BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 PRINTS PR01036 Tetracycline resistance protein TetB signature 219 237 1.6E-5 T 16-09-2016 BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 Gene3D G3DSA:1.20.1250.20 487 511 9.7E-19 T 16-09-2016 BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 Gene3D G3DSA:1.20.1250.20 275 437 9.7E-19 T 16-09-2016 BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 Pfam PF07690 Major Facilitator Superfamily 33 427 7.3E-54 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 PANTHER PTHR23501:SF52 10 514 1.6E-274 T 16-09-2016 BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 SUPERFAMILY SSF103473 265 436 7.59E-67 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 SUPERFAMILY SSF103473 486 511 7.59E-67 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 SUPERFAMILY SSF103473 26 213 7.59E-67 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 Gene3D G3DSA:1.20.1250.20 31 213 1.2E-35 T 16-09-2016 BER92_RS06555 c97b297d3aec449f2bf801c04ec1a5d1 526 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 29 507 1.3E-153 T 16-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 BER92_RS05805 71c8b43b0de989ae4d54140d1ea295bc 214 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 14 211 1.8E-63 T 16-09-2016 IPR005744 Hly-III GO:0016021|GO:0019835 BER92_RS05805 71c8b43b0de989ae4d54140d1ea295bc 214 PANTHER PTHR20855:SF3 14 211 1.9E-63 T 16-09-2016 IPR005744 Hly-III GO:0016021|GO:0019835 BER92_RS05805 71c8b43b0de989ae4d54140d1ea295bc 214 PANTHER PTHR20855 14 211 1.9E-63 T 16-09-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 BER92_RS05805 71c8b43b0de989ae4d54140d1ea295bc 214 Pfam PF03006 Haemolysin-III related 12 206 1.1E-36 T 16-09-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 Gene3D G3DSA:2.170.130.10 70 190 6.6E-19 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 Gene3D G3DSA:2.40.170.20 232 252 4.8E-11 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 Gene3D G3DSA:2.40.170.20 289 442 4.8E-11 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 Gene3D G3DSA:2.40.170.20 477 550 4.8E-11 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 Gene3D G3DSA:2.40.170.20 596 638 4.8E-11 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 50 643 2.1E-110 T 16-09-2016 IPR010104 Bacterial TonB-dependent receptor BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 176 3.0E-15 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 SUPERFAMILY SSF56935 309 522 4.35E-48 T 16-09-2016 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 SUPERFAMILY SSF56935 577 677 4.35E-48 T 16-09-2016 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 SUPERFAMILY SSF56935 45 255 4.35E-48 T 16-09-2016 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 PANTHER PTHR40980:SF2 30 428 1.0E-96 T 16-09-2016 BER92_RS00650 de45f33293d9df3c6ea606b62f514ffa 745 PANTHER PTHR40980 30 428 1.0E-96 T 16-09-2016 BER92_RS16910 4f938a3581554e9660f5a9d7c0db5596 258 PANTHER PTHR30632:SF0 4 254 7.5E-71 T 16-09-2016 BER92_RS16910 4f938a3581554e9660f5a9d7c0db5596 258 PANTHER PTHR30632 4 254 7.5E-71 T 16-09-2016 BER92_RS16910 4f938a3581554e9660f5a9d7c0db5596 258 Pfam PF13531 Bacterial extracellular solute-binding protein 29 254 2.0E-45 T 16-09-2016 BER92_RS16910 4f938a3581554e9660f5a9d7c0db5596 258 SUPERFAMILY SSF53850 28 254 9.93E-65 T 16-09-2016 BER92_RS16910 4f938a3581554e9660f5a9d7c0db5596 258 PIRSF PIRSF004846 3 258 9.0E-70 T 16-09-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 BER92_RS16910 4f938a3581554e9660f5a9d7c0db5596 258 Gene3D G3DSA:3.40.190.10 29 118 1.9E-16 T 16-09-2016 BER92_RS16910 4f938a3581554e9660f5a9d7c0db5596 258 Gene3D G3DSA:3.40.190.10 218 254 1.9E-16 T 16-09-2016 BER92_RS16910 4f938a3581554e9660f5a9d7c0db5596 258 Gene3D G3DSA:3.40.190.10 119 217 1.2E-37 T 16-09-2016 BER92_RS16910 4f938a3581554e9660f5a9d7c0db5596 258 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 34 251 3.6E-60 T 16-09-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 BER92_RS15580 eef91e821d7d2d1d3aea669a805bc0a8 243 Pfam PF01144 Coenzyme A transferase 16 225 2.2E-79 T 16-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 BER92_RS15580 eef91e821d7d2d1d3aea669a805bc0a8 243 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 27 42 - T 16-09-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 BER92_RS15580 eef91e821d7d2d1d3aea669a805bc0a8 243 PANTHER PTHR13707 6 240 4.4E-140 T 16-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 BER92_RS15580 eef91e821d7d2d1d3aea669a805bc0a8 243 Gene3D G3DSA:3.40.1080.10 12 224 7.6E-100 T 16-09-2016 BER92_RS15580 eef91e821d7d2d1d3aea669a805bc0a8 243 SMART SM00882 14 226 1.4E-92 T 16-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 BER92_RS15580 eef91e821d7d2d1d3aea669a805bc0a8 243 SUPERFAMILY SSF100950 13 236 1.05E-86 T 16-09-2016 BER92_RS15580 eef91e821d7d2d1d3aea669a805bc0a8 243 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 12 225 4.8E-80 T 16-09-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 BER92_RS18925 74196bbef80c2757347df8a991622095 746 Gene3D G3DSA:1.10.730.10 638 733 3.0E-5 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS18925 74196bbef80c2757347df8a991622095 746 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 4 744 24.324 T 16-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PANTHER PTHR30075:SF2 7 533 2.3E-303 T 16-09-2016 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PANTHER PTHR30075:SF2 613 746 2.3E-303 T 16-09-2016 BER92_RS18925 74196bbef80c2757347df8a991622095 746 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 586 5.7E-190 T 16-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18925 74196bbef80c2757347df8a991622095 746 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 6 744 5.6E-198 T 16-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18925 74196bbef80c2757347df8a991622095 746 Pfam PF05746 DALR anticodon binding domain 638 731 1.1E-6 T 16-09-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BER92_RS18925 74196bbef80c2757347df8a991622095 746 SUPERFAMILY SSF109604 355 492 8.9E-16 T 16-09-2016 BER92_RS18925 74196bbef80c2757347df8a991622095 746 SMART SM00836 641 744 0.0073 T 16-09-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PANTHER PTHR30075 7 533 2.3E-303 T 16-09-2016 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PANTHER PTHR30075 613 746 2.3E-303 T 16-09-2016 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PANTHER PTHR30075 556 593 2.3E-303 T 16-09-2016 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PANTHER PTHR30075:SF2 556 593 2.3E-303 T 16-09-2016 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 248 263 2.3E-29 T 16-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 320 336 2.3E-29 T 16-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 8 21 2.3E-29 T 16-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 53 65 2.3E-29 T 16-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18925 74196bbef80c2757347df8a991622095 746 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 396 415 2.3E-29 T 16-09-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18925 74196bbef80c2757347df8a991622095 746 Gene3D G3DSA:1.10.3210.10 368 463 4.4E-4 T 16-09-2016 IPR006674 HD domain BER92_RS08315 ca21a47d5d14cdf44d6a4a1fb185cdcc 267 Pfam PF06945 Protein of unknown function (DUF1289) 15 56 1.1E-18 T 16-09-2016 IPR010710 Protein of unknown function DUF1289 BER92_RS08315 ca21a47d5d14cdf44d6a4a1fb185cdcc 267 Gene3D G3DSA:3.90.79.10 105 262 2.4E-36 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS08315 ca21a47d5d14cdf44d6a4a1fb185cdcc 267 Pfam PF00293 NUDIX domain 109 215 8.6E-12 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS08315 ca21a47d5d14cdf44d6a4a1fb185cdcc 267 PANTHER PTHR12992 105 259 5.4E-52 T 16-09-2016 BER92_RS08315 ca21a47d5d14cdf44d6a4a1fb185cdcc 267 SUPERFAMILY SSF55811 107 256 2.17E-30 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 PANTHER PTHR24031 811 826 4.2E-43 T 16-09-2016 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 PANTHER PTHR24031 30 234 4.2E-43 T 16-09-2016 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 PANTHER PTHR24031 258 414 4.2E-43 T 16-09-2016 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 Gene3D G3DSA:3.40.50.300 260 387 1.2E-24 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 SMART SM00487 22 241 2.3E-23 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 Pfam PF00270 DEAD/DEAH box helicase 28 211 4.7E-24 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 PIRSF PIRSF037307 8 827 1.8E-141 T 16-09-2016 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 15 825 0.0 T 16-09-2016 IPR026362 DEXH box helicase, DNA ligase-associated BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 PANTHER PTHR24031:SF122 811 826 4.2E-43 T 16-09-2016 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 SMART SM00490 290 372 1.7E-15 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 Pfam PF00271 Helicase conserved C-terminal domain 263 367 2.8E-12 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 Pfam PF08494 DEAD/H associated 609 796 4.0E-47 T 16-09-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 SUPERFAMILY SSF52540 33 213 1.41E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 SUPERFAMILY SSF52540 241 382 1.41E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 PANTHER PTHR24031:SF122 30 234 4.2E-43 T 16-09-2016 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 PANTHER PTHR24031:SF122 258 414 4.2E-43 T 16-09-2016 BER92_RS07040 c1bb78124f2f129b569643d3bdaea809 830 Gene3D G3DSA:3.40.50.300 16 213 1.4E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08070 81c801a9ff57dec37010375f29a10d35 203 PANTHER PTHR35604 2 203 9.0E-156 T 16-09-2016 BER92_RS08070 81c801a9ff57dec37010375f29a10d35 203 Pfam PF05598 Transposase domain (DUF772) 50 122 4.7E-20 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS08070 81c801a9ff57dec37010375f29a10d35 203 Pfam PF01609 Transposase DDE domain 135 203 1.4E-9 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS08070 81c801a9ff57dec37010375f29a10d35 203 PANTHER PTHR35604:SF2 2 203 9.0E-156 T 16-09-2016 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 639 657 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1776 1794 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 780 801 1.8E-6 T 16-09-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 1189 1210 1.8E-6 T 16-09-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 547 568 1.8E-6 T 16-09-2016 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 585 603 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1039 1057 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 177 195 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 222 240 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1376 1394 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 421 439 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 362 553 8.27E-36 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 803 821 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 563 753 7.15E-35 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 821 839 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1203 1221 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1221 1239 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1767 1785 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 603 621 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 PRINTS PR00313 NodO calcium binding signature 214 225 9.6E-9 T 16-09-2016 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 PRINTS PR00313 NodO calcium binding signature 262 271 9.6E-9 T 16-09-2016 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 PRINTS PR00313 NodO calcium binding signature 226 234 9.6E-9 T 16-09-2016 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 PRINTS PR00313 NodO calcium binding signature 235 243 9.6E-9 T 16-09-2016 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 762 953 3.66E-35 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1713 1731 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1731 1749 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 567 585 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 963 1153 3.92E-36 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 1736 1874 9.81E-28 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Gene3D G3DSA:2.150.10.10 362 555 2.4E-44 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Gene3D G3DSA:2.150.10.10 763 955 1.4E-43 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Gene3D G3DSA:2.150.10.10 1691 1878 1.7E-45 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Gene3D G3DSA:2.150.10.10 1492 1682 2.3E-40 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Gene3D G3DSA:2.150.10.10 1163 1335 3.5E-36 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Gene3D G3DSA:2.150.10.10 564 755 5.8E-43 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Gene3D G3DSA:2.150.10.10 1347 1482 4.7E-23 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Gene3D G3DSA:2.150.10.10 172 354 9.1E-41 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Gene3D G3DSA:2.150.10.10 964 1155 5.0E-45 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF06594 Haemolysin-type calcium binding protein related domain 711 754 1.4E-11 T 16-09-2016 IPR010566 Haemolysin-type calcium binding-related BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF06594 Haemolysin-type calcium binding protein related domain 1111 1154 2.5E-11 T 16-09-2016 IPR010566 Haemolysin-type calcium binding-related BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF06594 Haemolysin-type calcium binding protein related domain 1293 1336 3.2E-10 T 16-09-2016 IPR010566 Haemolysin-type calcium binding-related BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF06594 Haemolysin-type calcium binding protein related domain 1640 1681 8.9E-12 T 16-09-2016 IPR010566 Haemolysin-type calcium binding-related BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF06594 Haemolysin-type calcium binding protein related domain 911 954 8.0E-12 T 16-09-2016 IPR010566 Haemolysin-type calcium binding-related BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF06594 Haemolysin-type calcium binding protein related domain 511 554 3.8E-13 T 16-09-2016 IPR010566 Haemolysin-type calcium binding-related BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF06594 Haemolysin-type calcium binding protein related domain 1440 1481 1.4E-13 T 16-09-2016 IPR010566 Haemolysin-type calcium binding-related BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF06594 Haemolysin-type calcium binding protein related domain 1838 1877 5.5E-11 T 16-09-2016 IPR010566 Haemolysin-type calcium binding-related BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF06594 Haemolysin-type calcium binding protein related domain 311 353 3.8E-13 T 16-09-2016 IPR010566 Haemolysin-type calcium binding-related BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 967 985 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 240 258 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 1493 1680 2.18E-30 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 1683 1751 2.75E-14 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 173 352 1.47E-31 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 785 803 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 439 457 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1749 1767 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1185 1203 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1003 1021 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 204 222 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 1325 1480 8.76E-19 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 580 596 0.0098 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 998 1014 0.16 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 199 215 0.088 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 615 632 0.021 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1544 1560 0.036 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 852 867 5.9 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1780 1795 0.059 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1034 1050 0.063 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 762 778 0.04 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1762 1778 0.048 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 963 978 0.057 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 451 467 0.015 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 563 578 0.057 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 235 251 0.039 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 434 450 0.0045 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 379 396 0.39 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 979 996 5.8 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 415 432 0.0033 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1580 1595 0.075 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1744 1760 1.2 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1198 1214 0.022 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1690 1706 0.14 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1562 1577 0.38 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 815 832 0.01 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1015 1032 0.067 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 598 614 0.75 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 216 233 7.4E-4 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1234 1249 12.0 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 362 378 0.51 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1490 1506 0.84 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1526 1542 0.0082 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1726 1742 0.081 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1707 1724 0.38 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 651 667 0.077 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1163 1178 1.9 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 798 814 0.2 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 180 197 40.0 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 253 268 0.29 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 780 796 0.36 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 634 650 0.14 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1216 1232 0.0015 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1051 1067 0.018 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 397 414 0.18 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 834 850 0.028 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1180 1196 0.66 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1373 1387 0.026 T 16-09-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 621 639 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1695 1713 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1513 1531 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1021 1039 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1167 1185 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 213 231 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 403 421 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 SUPERFAMILY SSF51120 1163 1335 4.06E-29 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 231 249 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1531 1549 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 367 385 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1549 1567 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 385 403 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS03120 cba6ef2c828ebdb18d248625f4e501a1 1917 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 767 785 - T 16-09-2016 IPR018511 Hemolysin-type calcium-binding conserved site BER92_RS02655 756fb4a8c577e4f8e42e3467715c85c9 394 Pfam PF00155 Aminotransferase class I and II 39 387 1.2E-50 T 16-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BER92_RS02655 756fb4a8c577e4f8e42e3467715c85c9 394 PANTHER PTHR11751:SF401 14 394 3.2E-183 T 16-09-2016 BER92_RS02655 756fb4a8c577e4f8e42e3467715c85c9 394 Gene3D G3DSA:3.90.1150.10 276 394 9.5E-30 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS02655 756fb4a8c577e4f8e42e3467715c85c9 394 PANTHER PTHR11751 14 394 3.2E-183 T 16-09-2016 BER92_RS02655 756fb4a8c577e4f8e42e3467715c85c9 394 Gene3D G3DSA:3.40.640.10 57 275 1.1E-58 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS02655 756fb4a8c577e4f8e42e3467715c85c9 394 SUPERFAMILY SSF53383 12 393 1.9E-93 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS02655 756fb4a8c577e4f8e42e3467715c85c9 394 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 237 250 - T 16-09-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 BER92_RS02625 3b2fde377ad344c1cff32a84f36bd3ca 321 Pfam PF08279 HTH domain 6 61 1.0E-11 T 16-09-2016 IPR013196 Helix-turn-helix, type 11 BER92_RS02625 3b2fde377ad344c1cff32a84f36bd3ca 321 PANTHER PTHR34580:SF3 1 321 2.5E-102 T 16-09-2016 BER92_RS02625 3b2fde377ad344c1cff32a84f36bd3ca 321 PANTHER PTHR34580 1 321 2.5E-102 T 16-09-2016 BER92_RS02625 3b2fde377ad344c1cff32a84f36bd3ca 321 SUPERFAMILY SSF46785 2 47 4.08E-6 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS02625 3b2fde377ad344c1cff32a84f36bd3ca 321 Gene3D G3DSA:1.10.10.10 1 64 9.1E-14 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS02625 3b2fde377ad344c1cff32a84f36bd3ca 321 Pfam PF13280 WYL domain 144 313 1.0E-38 T 16-09-2016 IPR026881 WYL domain BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 Pfam PF00771 FHIPEP family 31 687 1.7E-255 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 37 50 4.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 141 157 4.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 160 178 4.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 74 93 4.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 190 207 4.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 241 255 4.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 PANTHER PTHR30161 1 697 0.0 T 16-09-2016 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 23 696 8.0E-251 T 16-09-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 PIRSF PIRSF005419 10 697 7.2E-233 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS10450 9c4193866cb01c47434e572fe1488467 697 PANTHER PTHR30161:SF1 1 697 0.0 T 16-09-2016 BER92_RS08900 0d1950c0a85491d74d676715a1a3c836 267 PANTHER PTHR31270 1 257 7.9E-97 T 16-09-2016 BER92_RS08900 0d1950c0a85491d74d676715a1a3c836 267 SUPERFAMILY SSF50969 25 255 7.85E-20 T 16-09-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like BER92_RS08900 0d1950c0a85491d74d676715a1a3c836 267 PANTHER PTHR31270:SF0 1 257 7.9E-97 T 16-09-2016 BER92_RS08900 0d1950c0a85491d74d676715a1a3c836 267 Gene3D G3DSA:2.130.10.10 63 255 2.6E-13 T 16-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 BER92_RS08900 0d1950c0a85491d74d676715a1a3c836 267 Pfam PF05096 Glutamine cyclotransferase 22 254 1.0E-92 T 16-09-2016 IPR007788 Glutamine cyclotransferase BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.7E-11 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.7E-11 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.7E-11 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 SUPERFAMILY SSF51735 8 244 4.95E-71 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 Gene3D G3DSA:3.40.50.720 2 244 1.4E-74 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PANTHER PTHR24322 156 187 4.4E-45 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PANTHER PTHR24322 12 140 4.4E-45 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.6E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 8.6E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 8.6E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.6E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 8.6E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 8.6E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 244 3.2E-50 T 16-09-2016 BER92_RS01730 4f66bc5a57e3a471f0463dfd49f228a4 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 192 3.6E-7 T 16-09-2016 BER92_RS00810 6b13d3e203121aed8ff6211c77be7658 91 Pfam PF05449 Putative 3TM holin, Phage_holin_3 9 89 7.1E-28 T 16-09-2016 IPR008473 Putative 3TM holin, Phage holin 3 BER92_RS08395 c91b39eb338189911619ae6427241331 423 SUPERFAMILY SSF53383 7 418 3.71E-73 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS08395 c91b39eb338189911619ae6427241331 423 Gene3D G3DSA:3.90.1150.10 274 420 2.9E-53 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS08395 c91b39eb338189911619ae6427241331 423 TIGRFAM TIGR01814 kynureninase: kynureninase 11 421 1.3E-154 T 16-09-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 BER92_RS08395 c91b39eb338189911619ae6427241331 423 Hamap MF_01970 Kynureninase [kynU]. 2 421 45.419 T 16-09-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 BER92_RS08395 c91b39eb338189911619ae6427241331 423 PANTHER PTHR14084 2 415 2.7E-211 T 16-09-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 BER92_RS08395 c91b39eb338189911619ae6427241331 423 PANTHER PTHR14084:SF0 2 415 2.7E-211 T 16-09-2016 BER92_RS08395 c91b39eb338189911619ae6427241331 423 PIRSF PIRSF038800 3 422 1.8E-154 T 16-09-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 BER92_RS08395 c91b39eb338189911619ae6427241331 423 Gene3D G3DSA:3.40.640.10 76 273 5.2E-16 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS08395 c91b39eb338189911619ae6427241331 423 Pfam PF00266 Aminotransferase class-V 162 356 3.7E-10 T 16-09-2016 IPR000192 Aminotransferase class V domain BER92_RS11605 72f4f63dfa44ad2b2e632511d2aeac10 219 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 11 211 2.8E-77 T 16-09-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BER92_RS11605 72f4f63dfa44ad2b2e632511d2aeac10 219 Pfam PF01081 KDPG and KHG aldolase 11 203 3.0E-63 T 16-09-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BER92_RS11605 72f4f63dfa44ad2b2e632511d2aeac10 219 PANTHER PTHR30246:SF0 1 219 2.6E-111 T 16-09-2016 BER92_RS11605 72f4f63dfa44ad2b2e632511d2aeac10 219 Gene3D G3DSA:3.20.20.70 5 217 3.3E-69 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS11605 72f4f63dfa44ad2b2e632511d2aeac10 219 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 42 51 - T 16-09-2016 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562|UniPathway: UPA00227|UniPathway: UPA00856 BER92_RS11605 72f4f63dfa44ad2b2e632511d2aeac10 219 PANTHER PTHR30246 1 219 2.6E-111 T 16-09-2016 BER92_RS11605 72f4f63dfa44ad2b2e632511d2aeac10 219 SUPERFAMILY SSF51569 7 213 4.21E-61 T 16-09-2016 BER92_RS09885 6fec259239b0139bf8d601e9a75db6ad 554 PANTHER PTHR32305 62 502 2.5E-14 T 16-09-2016 BER92_RS09885 6fec259239b0139bf8d601e9a75db6ad 554 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 135 238 8.5E-30 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS09885 6fec259239b0139bf8d601e9a75db6ad 554 SUPERFAMILY SSF69255 1 104 2.07E-20 T 16-09-2016 BER92_RS09885 6fec259239b0139bf8d601e9a75db6ad 554 PANTHER PTHR32305:SF7 62 502 2.5E-14 T 16-09-2016 BER92_RS09885 6fec259239b0139bf8d601e9a75db6ad 554 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 288 436 3.0E-44 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS09885 6fec259239b0139bf8d601e9a75db6ad 554 Gene3D G3DSA:2.40.50.230 4 104 6.2E-28 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS19265 4c89725315e6835f10164822edde4749 582 PANTHER PTHR24423 50 433 4.5E-80 T 16-09-2016 BER92_RS19265 4c89725315e6835f10164822edde4749 582 PANTHER PTHR24423:SF439 50 433 4.5E-80 T 16-09-2016 BER92_RS19265 4c89725315e6835f10164822edde4749 582 SUPERFAMILY SSF55785 179 299 1.64E-12 T 16-09-2016 IPR000014 PAS domain BER92_RS19265 4c89725315e6835f10164822edde4749 582 Pfam PF08448 PAS fold 326 426 7.6E-10 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS19265 4c89725315e6835f10164822edde4749 582 SMART SM00065 30 173 9.7E-8 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS19265 4c89725315e6835f10164822edde4749 582 Gene3D G3DSA:3.30.450.20 180 298 2.6E-14 T 16-09-2016 BER92_RS19265 4c89725315e6835f10164822edde4749 582 Gene3D G3DSA:3.30.70.270 437 576 7.3E-30 T 16-09-2016 BER92_RS19265 4c89725315e6835f10164822edde4749 582 SUPERFAMILY SSF55785 298 422 1.48E-21 T 16-09-2016 IPR000014 PAS domain BER92_RS19265 4c89725315e6835f10164822edde4749 582 SUPERFAMILY SSF55073 440 575 4.32E-27 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS19265 4c89725315e6835f10164822edde4749 582 Pfam PF00990 Diguanylate cyclase, GGDEF domain 436 574 2.0E-24 T 16-09-2016 IPR000160 GGDEF domain BER92_RS19265 4c89725315e6835f10164822edde4749 582 Gene3D G3DSA:3.30.450.20 299 422 4.2E-22 T 16-09-2016 BER92_RS19265 4c89725315e6835f10164822edde4749 582 SMART SM00091 313 379 9.3E-10 T 16-09-2016 IPR000014 PAS domain BER92_RS19265 4c89725315e6835f10164822edde4749 582 Gene3D G3DSA:3.30.450.40 16 179 1.6E-9 T 16-09-2016 IPR029016 GAF domain-like BER92_RS19265 4c89725315e6835f10164822edde4749 582 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 310 431 5.0E-16 T 16-09-2016 IPR000014 PAS domain BER92_RS19265 4c89725315e6835f10164822edde4749 582 SUPERFAMILY SSF55781 30 173 1.42E-20 T 16-09-2016 IPR029016 GAF domain-like BER92_RS19265 4c89725315e6835f10164822edde4749 582 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 434 576 1.4E-24 T 16-09-2016 IPR000160 GGDEF domain BER92_RS19265 4c89725315e6835f10164822edde4749 582 SMART SM00267 424 580 5.3E-20 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10350 8a43adb311521ad5dd0a358d40f0f3b2 1165 PANTHER PTHR22916 717 767 1.0E-17 T 16-09-2016 BER92_RS10350 8a43adb311521ad5dd0a358d40f0f3b2 1165 PANTHER PTHR22916 504 700 1.0E-17 T 16-09-2016 BER92_RS10350 8a43adb311521ad5dd0a358d40f0f3b2 1165 SUPERFAMILY SSF53756 880 1146 1.73E-9 T 16-09-2016 BER92_RS10350 8a43adb311521ad5dd0a358d40f0f3b2 1165 SUPERFAMILY SSF53448 8 217 2.16E-24 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS10350 8a43adb311521ad5dd0a358d40f0f3b2 1165 Gene3D G3DSA:3.90.550.10 5 220 2.4E-25 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS10350 8a43adb311521ad5dd0a358d40f0f3b2 1165 Gene3D G3DSA:3.90.550.10 554 770 6.2E-27 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS10350 8a43adb311521ad5dd0a358d40f0f3b2 1165 SUPERFAMILY SSF53448 545 778 7.59E-29 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS10350 8a43adb311521ad5dd0a358d40f0f3b2 1165 Pfam PF00535 Glycosyl transferase family 2 567 734 1.0E-11 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS10350 8a43adb311521ad5dd0a358d40f0f3b2 1165 Pfam PF00535 Glycosyl transferase family 2 9 121 4.5E-12 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 SUPERFAMILY SSF53335 2 234 1.41E-47 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 PANTHER PTHR13370 3 232 1.1E-27 T 16-09-2016 BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 25 31 - T 16-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 Gene3D G3DSA:3.40.50.150 2 234 2.8E-51 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 Pfam PF01555 DNA methylase 168 229 1.1E-12 T 16-09-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 Pfam PF01555 DNA methylase 23 148 3.8E-11 T 16-09-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 214 234 2.9E-21 T 16-09-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 78 98 2.9E-21 T 16-09-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 191 209 2.9E-21 T 16-09-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 21 35 2.9E-21 T 16-09-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BER92_RS00760 75a44fc027ee5e2b29ecdf4e8e98aa59 237 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 173 190 2.9E-21 T 16-09-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 PIRSF PIRSF005925 45 770 0.0 T 16-09-2016 BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 SUPERFAMILY SSF141868 520 767 1.09E-82 T 16-09-2016 IPR001633 EAL domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 SMART SM00086 129 171 2.3E-5 T 16-09-2016 IPR001610 PAC motif BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 PANTHER PTHR33121 206 223 1.8E-78 T 16-09-2016 BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 PANTHER PTHR33121:SF13 206 223 1.8E-78 T 16-09-2016 BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 Gene3D G3DSA:3.30.450.20 65 170 2.5E-23 T 16-09-2016 BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 Pfam PF00990 Diguanylate cyclase, GGDEF domain 344 499 6.5E-42 T 16-09-2016 IPR000160 GGDEF domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 SUPERFAMILY SSF55073 349 506 6.12E-46 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 56 172 4.1E-17 T 16-09-2016 IPR000014 PAS domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 Gene3D G3DSA:3.30.70.270 346 512 4.0E-51 T 16-09-2016 BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 SMART SM00091 56 122 8.6E-7 T 16-09-2016 IPR000014 PAS domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 SMART SM00267 333 504 4.9E-58 T 16-09-2016 IPR000160 GGDEF domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 SUPERFAMILY SSF55781 193 344 5.23E-23 T 16-09-2016 IPR029016 GAF domain-like BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 Pfam PF00563 EAL domain 520 756 6.7E-72 T 16-09-2016 IPR001633 EAL domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 PANTHER PTHR33121:SF13 464 766 1.8E-78 T 16-09-2016 BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 PANTHER PTHR33121 464 766 1.8E-78 T 16-09-2016 BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 342 501 5.0E-35 T 16-09-2016 IPR000160 GGDEF domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 Gene3D G3DSA:3.30.450.40 179 343 9.2E-19 T 16-09-2016 IPR029016 GAF domain-like BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 Pfam PF13185 GAF domain 190 332 4.0E-11 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 SUPERFAMILY SSF55785 62 169 1.92E-21 T 16-09-2016 IPR000014 PAS domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 SMART SM00052 514 761 2.8E-106 T 16-09-2016 IPR001633 EAL domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 Gene3D G3DSA:3.20.20.450 518 768 9.3E-90 T 16-09-2016 IPR001633 EAL domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 Pfam PF13426 PAS domain 68 170 1.1E-16 T 16-09-2016 IPR000014 PAS domain BER92_RS09460 35c0b1ce96ede692e88efdea61b6d82c 770 SMART SM00065 173 341 4.5E-6 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946 905 969 0.0 T 16-09-2016 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946 229 338 0.0 T 16-09-2016 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946 1 205 0.0 T 16-09-2016 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946 633 885 0.0 T 16-09-2016 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946 360 595 0.0 T 16-09-2016 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 SUPERFAMILY SSF52374 634 666 2.21E-127 T 16-09-2016 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 SUPERFAMILY SSF52374 391 596 2.21E-127 T 16-09-2016 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 SUPERFAMILY SSF52374 3 194 2.21E-127 T 16-09-2016 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 54 - T 16-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946:SF5 905 969 0.0 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 SUPERFAMILY SSF46589 909 973 3.45E-16 T 16-09-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 17 656 4.5E-190 T 16-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946:SF5 360 595 0.0 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Gene3D G3DSA:1.10.287.380 902 973 4.2E-11 T 16-09-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Gene3D G3DSA:1.10.730.10 657 840 3.1E-55 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 909 972 1.1E-17 T 16-09-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Pfam PF08264 Anticodon-binding domain of tRNA 697 849 3.6E-39 T 16-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PRINTS PR00986 Valyl-tRNA synthetase signature 36 47 1.4E-26 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PRINTS PR00986 Valyl-tRNA synthetase signature 396 409 1.4E-26 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PRINTS PR00986 Valyl-tRNA synthetase signature 496 517 1.4E-26 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PRINTS PR00986 Valyl-tRNA synthetase signature 531 549 1.4E-26 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 TIGRFAM TIGR00422 valS: valine--tRNA ligase 6 956 0.0 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946:SF5 1 205 0.0 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Gene3D G3DSA:3.40.50.620 391 596 1.7E-132 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Gene3D G3DSA:3.40.50.620 7 195 1.7E-132 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Gene3D G3DSA:3.40.50.620 634 655 1.7E-132 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Hamap MF_02004 Valine--tRNA ligase [valS]. 4 973 15.38 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 SUPERFAMILY SSF47323 667 924 1.87E-60 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946:SF5 229 338 0.0 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 PANTHER PTHR11946:SF5 633 885 0.0 T 16-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 SUPERFAMILY SSF50677 351 392 5.23E-52 T 16-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 SUPERFAMILY SSF50677 194 322 5.23E-52 T 16-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 BER92_RS04290 2481938b8bd3e7c202ecea7ce83a98a8 973 Gene3D G3DSA:3.90.740.10 197 387 2.3E-43 T 16-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 BER92_RS02485 b659495b059e0878ccc3c1bd80f0cd11 774 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 120 471 3.2E-68 T 16-09-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BER92_RS02485 b659495b059e0878ccc3c1bd80f0cd11 774 Gene3D G3DSA:3.40.50.1820 502 758 9.4E-65 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02485 b659495b059e0878ccc3c1bd80f0cd11 774 SUPERFAMILY SSF53474 502 757 1.74E-56 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02485 b659495b059e0878ccc3c1bd80f0cd11 774 Pfam PF00326 Prolyl oligopeptidase family 561 757 7.2E-47 T 16-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BER92_RS02485 b659495b059e0878ccc3c1bd80f0cd11 774 SUPERFAMILY SSF82171 66 495 5.49E-37 T 16-09-2016 BER92_RS02485 b659495b059e0878ccc3c1bd80f0cd11 774 PANTHER PTHR11731:SF118 158 769 0.0 T 16-09-2016 BER92_RS02485 b659495b059e0878ccc3c1bd80f0cd11 774 Gene3D G3DSA:2.140.10.30 55 500 4.2E-63 T 16-09-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BER92_RS02485 b659495b059e0878ccc3c1bd80f0cd11 774 PANTHER PTHR11731 158 769 0.0 T 16-09-2016 BER92_RS18015 ed9647b08f0dbfefe75eba33c48c7224 356 PANTHER PTHR19353 18 344 2.4E-67 T 16-09-2016 BER92_RS18015 ed9647b08f0dbfefe75eba33c48c7224 356 PANTHER PTHR19353:SF27 18 344 2.4E-67 T 16-09-2016 BER92_RS18015 ed9647b08f0dbfefe75eba33c48c7224 356 Pfam PF00487 Fatty acid desaturase 60 302 2.9E-35 T 16-09-2016 IPR005804 Fatty acid desaturase domain GO:0006629 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Pfam PF01138 3' exoribonuclease family, domain 1 15 143 2.6E-19 T 16-09-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 3.7E-21 T 16-09-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 320 1.9E-14 T 16-09-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 SMART SM00316 621 691 4.9E-26 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 SUPERFAMILY SSF50249 609 695 2.91E-22 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Gene3D G3DSA:1.10.10.400 238 313 1.3E-18 T 16-09-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Gene3D G3DSA:3.30.230.70 3 222 4.5E-81 T 16-09-2016 IPR027408 PNPase/RNase PH domain BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Gene3D G3DSA:3.30.230.70 314 542 1.4E-89 T 16-09-2016 IPR027408 PNPase/RNase PH domain BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 PIRSF PIRSF005499 1 704 6.4E-296 T 16-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 SUPERFAMILY SSF54211 301 469 1.67E-47 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Pfam PF00575 S1 RNA binding domain 620 691 1.4E-20 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 SUPERFAMILY SSF55666 144 234 2.38E-27 T 16-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 PANTHER PTHR11252 2 695 0.0 T 16-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Pfam PF00013 KH domain 558 615 8.8E-10 T 16-09-2016 IPR004088 K Homology domain, type 1 GO:0003723 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 SUPERFAMILY SSF55666 451 550 6.87E-28 T 16-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 SUPERFAMILY SSF54791 553 630 3.03E-17 T 16-09-2016 IPR004088 K Homology domain, type 1 GO:0003723 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Pfam PF03725 3' exoribonuclease family, domain 2 146 209 2.0E-11 T 16-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Pfam PF03725 3' exoribonuclease family, domain 2 460 529 4.2E-7 T 16-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 SUPERFAMILY SSF46915 238 321 1.65E-15 T 16-09-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Gene3D G3DSA:3.30.1370.10 552 618 7.6E-26 T 16-09-2016 IPR004088 K Homology domain, type 1 GO:0003723 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 PANTHER PTHR11252:SF0 2 695 0.0 T 16-09-2016 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 693 0.0 T 16-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 694 30.515 T 16-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 SUPERFAMILY SSF54211 4 143 7.09E-49 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 SMART SM00322 553 618 3.8E-12 T 16-09-2016 IPR004087 K Homology domain GO:0003676 BER92_RS07345 89619628b53c89bf8249d3fb0df45c50 704 Gene3D G3DSA:2.40.50.140 619 695 1.8E-27 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08770 96555eca769e8ac399417b94e17ed854 179 PANTHER PTHR35562:SF2 1 179 4.2E-68 T 16-09-2016 BER92_RS08770 96555eca769e8ac399417b94e17ed854 179 Pfam PF01713 Smr domain 96 176 7.4E-22 T 16-09-2016 IPR002625 Smr domain BER92_RS08770 96555eca769e8ac399417b94e17ed854 179 PANTHER PTHR35562 1 179 4.2E-68 T 16-09-2016 BER92_RS08770 96555eca769e8ac399417b94e17ed854 179 SMART SM00463 93 177 5.0E-14 T 16-09-2016 IPR002625 Smr domain BER92_RS08770 96555eca769e8ac399417b94e17ed854 179 SUPERFAMILY SSF160443 94 176 8.24E-17 T 16-09-2016 IPR002625 Smr domain BER92_RS01000 bf1157917674384e9c9906761087bf28 378 PANTHER PTHR32039 52 376 3.1E-112 T 16-09-2016 BER92_RS01000 bf1157917674384e9c9906761087bf28 378 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 71 287 1.0E-73 T 16-09-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 BER92_RS01000 bf1157917674384e9c9906761087bf28 378 Pfam PF02481 DNA recombination-mediator protein A 73 279 7.6E-74 T 16-09-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 BER92_RS01000 bf1157917674384e9c9906761087bf28 378 SUPERFAMILY SSF102405 83 289 1.3E-38 T 16-09-2016 BER92_RS01000 bf1157917674384e9c9906761087bf28 378 Gene3D G3DSA:3.40.50.450 114 277 9.4E-11 T 16-09-2016 BER92_RS01000 bf1157917674384e9c9906761087bf28 378 PANTHER PTHR32039:SF8 52 376 3.1E-112 T 16-09-2016 BER92_RS03615 b41265863458016e2393f1ae978399ca 80 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 24.361 T 16-09-2016 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS03615 b41265863458016e2393f1ae978399ca 80 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 16-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS03615 b41265863458016e2393f1ae978399ca 80 Pfam PF01197 Ribosomal protein L31 1 79 1.1E-29 T 16-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS03615 b41265863458016e2393f1ae978399ca 80 SUPERFAMILY SSF143800 1 79 9.81E-23 T 16-09-2016 BER92_RS03615 b41265863458016e2393f1ae978399ca 80 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 3.4E-21 T 16-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS03615 b41265863458016e2393f1ae978399ca 80 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.4E-19 T 16-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS03615 b41265863458016e2393f1ae978399ca 80 PRINTS PR01249 Ribosomal protein L31 signature 45 60 1.4E-19 T 16-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS03615 b41265863458016e2393f1ae978399ca 80 PRINTS PR01249 Ribosomal protein L31 signature 60 78 1.4E-19 T 16-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS03615 b41265863458016e2393f1ae978399ca 80 PANTHER PTHR33280 1 80 1.4E-32 T 16-09-2016 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 Gene3D G3DSA:3.40.50.720 238 426 2.5E-39 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 13 418 2.2E-111 T 16-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 208 296 1.1E-23 T 16-09-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 PANTHER PTHR11374:SF25 11 429 7.0E-248 T 16-09-2016 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 PIRSF PIRSF000124 12 429 1.2E-49 T 16-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 SUPERFAMILY SSF52413 317 425 5.36E-25 T 16-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 PANTHER PTHR11374 11 429 7.0E-248 T 16-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 SMART SM00984 323 423 4.1E-33 T 16-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 SUPERFAMILY SSF51735 13 197 2.45E-43 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 13 186 2.3E-31 T 16-09-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 SUPERFAMILY SSF48179 207 297 3.4E-25 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 Gene3D G3DSA:3.40.50.720 12 228 8.6E-52 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 323 421 1.1E-19 T 16-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 BER92_RS09760 92911ff77d51324c0558e61cf067d6bc 430 PIRSF PIRSF500136 4 430 4.6E-144 T 16-09-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 BER92_RS11920 61f4ed7192cada9e61ec1277e118cd3b 449 ProSitePatterns PS00483 Dihydroorotase signature 2. 313 324 - T 16-09-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS11920 61f4ed7192cada9e61ec1277e118cd3b 449 Gene3D G3DSA:3.20.20.140 70 416 1.5E-101 T 16-09-2016 BER92_RS11920 61f4ed7192cada9e61ec1277e118cd3b 449 Gene3D G3DSA:2.30.40.10 3 69 1.9E-25 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS11920 61f4ed7192cada9e61ec1277e118cd3b 449 SUPERFAMILY SSF51556 55 377 6.81E-89 T 16-09-2016 IPR032466 Metal-dependent hydrolase BER92_RS11920 61f4ed7192cada9e61ec1277e118cd3b 449 Pfam PF01979 Amidohydrolase family 51 430 7.2E-19 T 16-09-2016 IPR006680 Amidohydrolase-related GO:0016787 BER92_RS11920 61f4ed7192cada9e61ec1277e118cd3b 449 PANTHER PTHR11647 1 445 4.2E-151 T 16-09-2016 BER92_RS11920 61f4ed7192cada9e61ec1277e118cd3b 449 PANTHER PTHR11647:SF1 1 445 4.2E-151 T 16-09-2016 BER92_RS11920 61f4ed7192cada9e61ec1277e118cd3b 449 SUPERFAMILY SSF51338 1 54 3.48E-31 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS11920 61f4ed7192cada9e61ec1277e118cd3b 449 SUPERFAMILY SSF51338 377 440 3.48E-31 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 6 136 2.1E-49 T 16-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 39 56 - T 16-09-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 Gene3D G3DSA:2.40.100.10 5 134 2.0E-58 T 16-09-2016 IPR029000 Cyclophilin-like domain BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 18 33 3.1E-35 T 16-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 83 98 3.1E-35 T 16-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 56 3.1E-35 T 16-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 110 3.1E-35 T 16-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 126 3.1E-35 T 16-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 PANTHER PTHR11071 1 133 5.6E-70 T 16-09-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 PANTHER PTHR11071:SF192 1 133 5.6E-70 T 16-09-2016 BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 SUPERFAMILY SSF50891 4 140 6.28E-57 T 16-09-2016 IPR029000 Cyclophilin-like domain BER92_RS02185 862d312713cb2b9f2a7aaeced709730b 164 PIRSF PIRSF001467 2 156 3.5E-54 T 16-09-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 BER92_RS04860 8e71f510dcd55a31f464c6302729eb93 216 Gene3D G3DSA:3.30.1060.10 11 201 1.0E-72 T 16-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 BER92_RS04860 8e71f510dcd55a31f464c6302729eb93 216 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 47 201 4.5E-60 T 16-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 BER92_RS04860 8e71f510dcd55a31f464c6302729eb93 216 PANTHER PTHR10173:SF36 8 205 1.6E-95 T 16-09-2016 BER92_RS04860 8e71f510dcd55a31f464c6302729eb93 216 SUPERFAMILY SSF55068 10 211 1.96E-73 T 16-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 BER92_RS04860 8e71f510dcd55a31f464c6302729eb93 216 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 45 207 36.033 T 16-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 BER92_RS04860 8e71f510dcd55a31f464c6302729eb93 216 PANTHER PTHR10173 8 205 1.6E-95 T 16-09-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 BER92_RS04860 8e71f510dcd55a31f464c6302729eb93 216 Pfam PF01625 Peptide methionine sulfoxide reductase 48 201 8.0E-62 T 16-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 BER92_RS02440 3ce80eca51df68aa20d9ea7b184ea279 216 Gene3D G3DSA:3.40.30.10 30 211 6.3E-49 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS02440 3ce80eca51df68aa20d9ea7b184ea279 216 PANTHER PTHR35891 3 215 3.6E-49 T 16-09-2016 BER92_RS02440 3ce80eca51df68aa20d9ea7b184ea279 216 SUPERFAMILY SSF52833 27 206 1.69E-38 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS02440 3ce80eca51df68aa20d9ea7b184ea279 216 PIRSF PIRSF001488 6 212 2.3E-32 T 16-09-2016 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL BER92_RS02440 3ce80eca51df68aa20d9ea7b184ea279 216 ProSitePatterns PS00194 Thioredoxin family active site. 52 70 - T 16-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 BER92_RS02440 3ce80eca51df68aa20d9ea7b184ea279 216 PANTHER PTHR35891:SF2 3 215 3.6E-49 T 16-09-2016 BER92_RS02440 3ce80eca51df68aa20d9ea7b184ea279 216 Pfam PF13462 Thioredoxin 49 198 4.6E-11 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 SUPERFAMILY SSF50486 204 304 3.34E-30 T 16-09-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 SUPERFAMILY SSF53328 1 206 7.2E-63 T 16-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 PANTHER PTHR11138 1 303 7.7E-113 T 16-09-2016 BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 Pfam PF02911 Formyl transferase, C-terminal domain 203 299 1.0E-26 T 16-09-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 131 154 - T 16-09-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 Gene3D G3DSA:3.10.25.10 206 301 4.2E-29 T 16-09-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 303 35.859 T 16-09-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 301 7.7E-91 T 16-09-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 Pfam PF00551 Formyl transferase 1 176 6.6E-43 T 16-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS00985 66d0ca99c0cea584fede1f40546c9841 307 Gene3D G3DSA:3.40.50.170 1 204 5.1E-71 T 16-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 104 189 4.9E-24 T 16-09-2016 IPR020057 Ribosomal protein L25, beta domain BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 PANTHER PTHR33284 5 208 2.1E-63 T 16-09-2016 BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 Pfam PF01386 Ribosomal L25p family 7 94 9.5E-27 T 16-09-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 5 97 23.222 T 16-09-2016 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 Gene3D G3DSA:2.40.240.10 6 97 1.0E-33 T 16-09-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 Gene3D G3DSA:2.170.120.20 100 197 3.0E-25 T 16-09-2016 IPR020057 Ribosomal protein L25, beta domain BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 8 173 2.7E-39 T 16-09-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 6 97 5.0E-45 T 16-09-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 188 29.92 T 16-09-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 BER92_RS05060 62e5fec47bc900adaacc161cede116eb 210 SUPERFAMILY SSF50715 4 196 4.53E-55 T 16-09-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 Gene3D G3DSA:3.20.20.80 167 587 2.4E-124 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 24 108 2.9E-20 T 16-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 Pfam PF00128 Alpha amylase, catalytic domain 201 309 1.1E-13 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 SUPERFAMILY SSF81296 18 161 1.2E-48 T 16-09-2016 IPR014756 Immunoglobulin E-set BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 PANTHER PTHR10357 2 589 0.0 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 PANTHER PTHR10357 607 706 0.0 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 SUPERFAMILY SSF51011 599 707 5.58E-22 T 16-09-2016 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 Gene3D G3DSA:2.60.40.1180 599 707 4.4E-25 T 16-09-2016 IPR013780 Glycosyl hydrolase, all-beta BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 SMART SM00642 173 578 1.6E-11 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 SUPERFAMILY SSF51445 510 587 1.48E-137 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 SUPERFAMILY SSF51445 148 481 1.48E-137 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 PANTHER PTHR10357:SF74 607 706 0.0 T 16-09-2016 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 18 705 0.0 T 16-09-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 Gene3D G3DSA:2.60.40.10 18 166 7.6E-56 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS02320 850a5a98029eae85ab4b8f82dd824bfb 710 PANTHER PTHR10357:SF74 2 589 0.0 T 16-09-2016 BER92_RS10150 7152579b5099dcb0c9ddd2a3108765e7 372 Gene3D G3DSA:3.40.630.30 175 320 4.5E-19 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS10150 7152579b5099dcb0c9ddd2a3108765e7 372 PANTHER PTHR31384 46 303 6.9E-49 T 16-09-2016 BER92_RS10150 7152579b5099dcb0c9ddd2a3108765e7 372 SUPERFAMILY SSF55729 175 350 7.19E-37 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS10150 7152579b5099dcb0c9ddd2a3108765e7 372 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 11 371 4.0E-135 T 16-09-2016 IPR007434 Peptidogalycan biosysnthesis/recognition BER92_RS09015 507ff834c651d615967d33dd91386961 103 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 16-09-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BER92_RS09015 507ff834c651d615967d33dd91386961 103 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.005 T 16-09-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 BER92_RS09015 507ff834c651d615967d33dd91386961 103 Gene3D G3DSA:4.10.520.10 1 91 1.6E-32 T 16-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 BER92_RS09015 507ff834c651d615967d33dd91386961 103 PANTHER PTHR33175 1 100 2.1E-50 T 16-09-2016 BER92_RS09015 507ff834c651d615967d33dd91386961 103 PANTHER PTHR33175:SF5 1 100 2.1E-50 T 16-09-2016 BER92_RS09015 507ff834c651d615967d33dd91386961 103 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.3E-18 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS09015 507ff834c651d615967d33dd91386961 103 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.3E-18 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS09015 507ff834c651d615967d33dd91386961 103 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.3E-18 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS09015 507ff834c651d615967d33dd91386961 103 SMART SM00411 1 91 1.3E-39 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS09015 507ff834c651d615967d33dd91386961 103 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 91 1.6E-42 T 16-09-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 BER92_RS09015 507ff834c651d615967d33dd91386961 103 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.1E-28 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS09015 507ff834c651d615967d33dd91386961 103 SUPERFAMILY SSF47729 1 91 3.53E-30 T 16-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 275 2.5E-8 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 Gene3D G3DSA:1.10.287.130 205 274 5.6E-9 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 PANTHER PTHR24423:SF474 151 421 9.4E-88 T 16-09-2016 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 SUPERFAMILY SSF47384 195 274 1.1E-12 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 421 2.0E-11 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 PANTHER PTHR24423:SF474 40 81 9.4E-88 T 16-09-2016 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 SMART SM00388 212 278 1.2E-9 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 3.3E-5 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 3.3E-5 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 369 3.3E-5 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 PANTHER PTHR24423 151 421 9.4E-88 T 16-09-2016 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 PANTHER PTHR24423 40 81 9.4E-88 T 16-09-2016 BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 SMART SM00387 322 425 1.1E-12 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 Gene3D G3DSA:3.30.565.10 284 421 4.1E-20 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15020 e9fab097dd7a64f6dae896958be132c4 433 SUPERFAMILY SSF55874 284 421 1.83E-21 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03595 546ef05500461efe7ff9707d13861848 126 Gene3D G3DSA:3.30.1330.40 3 125 7.1E-49 T 16-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like BER92_RS03595 546ef05500461efe7ff9707d13861848 126 PANTHER PTHR11803 1 125 1.3E-53 T 16-09-2016 IPR006175 YjgF/YER057c/UK114 family BER92_RS03595 546ef05500461efe7ff9707d13861848 126 SUPERFAMILY SSF55298 2 125 2.98E-45 T 16-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like BER92_RS03595 546ef05500461efe7ff9707d13861848 126 Pfam PF01042 Endoribonuclease L-PSP 8 124 1.8E-40 T 16-09-2016 IPR006175 YjgF/YER057c/UK114 family BER92_RS03595 546ef05500461efe7ff9707d13861848 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 124 1.6E-49 T 16-09-2016 IPR006056 RidA family BER92_RS05120 f251e4544f7dee112a1a5d230a8bd963 177 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 25.157 T 16-09-2016 IPR022973 Ribosomal protein L10 BER92_RS05120 f251e4544f7dee112a1a5d230a8bd963 177 Pfam PF00466 Ribosomal protein L10 6 101 1.2E-22 T 16-09-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 BER92_RS05120 f251e4544f7dee112a1a5d230a8bd963 177 PANTHER PTHR11560 1 160 5.7E-44 T 16-09-2016 BER92_RS05120 f251e4544f7dee112a1a5d230a8bd963 177 SUPERFAMILY SSF160369 4 160 5.89E-43 T 16-09-2016 BER92_RS03900 1791e8bf0cd25155bcd17fbd6f18294d 138 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.9E-10 T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS03900 1791e8bf0cd25155bcd17fbd6f18294d 138 Gene3D G3DSA:3.30.700.10 7 137 2.5E-28 T 16-09-2016 BER92_RS03900 1791e8bf0cd25155bcd17fbd6f18294d 138 SUPERFAMILY SSF54523 7 136 2.35E-24 T 16-09-2016 BER92_RS03900 1791e8bf0cd25155bcd17fbd6f18294d 138 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS03900 1791e8bf0cd25155bcd17fbd6f18294d 138 Pfam PF13633 Prokaryotic N-terminal methylation site 4 30 6.7E-13 T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS03900 1791e8bf0cd25155bcd17fbd6f18294d 138 PANTHER PTHR30093 1 46 9.2E-17 T 16-09-2016 BER92_RS03900 1791e8bf0cd25155bcd17fbd6f18294d 138 Pfam PF00114 Pilin (bacterial filament) 35 137 3.2E-21 T 16-09-2016 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 BER92_RS11455 b0ade67fcf8eecf66ae430670773927f 134 PANTHER PTHR30007 1 133 5.3E-23 T 16-09-2016 BER92_RS11455 b0ade67fcf8eecf66ae430670773927f 134 PANTHER PTHR30007:SF0 1 133 5.3E-23 T 16-09-2016 BER92_RS11455 b0ade67fcf8eecf66ae430670773927f 134 Pfam PF01609 Transposase DDE domain 2 131 4.0E-19 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06520 b0ade67fcf8eecf66ae430670773927f 134 PANTHER PTHR30007 1 133 5.3E-23 T 16-09-2016 BER92_RS06520 b0ade67fcf8eecf66ae430670773927f 134 PANTHER PTHR30007:SF0 1 133 5.3E-23 T 16-09-2016 BER92_RS06520 b0ade67fcf8eecf66ae430670773927f 134 Pfam PF01609 Transposase DDE domain 2 131 4.0E-19 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01485 b0ade67fcf8eecf66ae430670773927f 134 PANTHER PTHR30007 1 133 5.3E-23 T 16-09-2016 BER92_RS01485 b0ade67fcf8eecf66ae430670773927f 134 PANTHER PTHR30007:SF0 1 133 5.3E-23 T 16-09-2016 BER92_RS01485 b0ade67fcf8eecf66ae430670773927f 134 Pfam PF01609 Transposase DDE domain 2 131 4.0E-19 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 SMART SM00487 276 470 8.2E-30 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 SMART SM00490 526 610 2.7E-21 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 Pfam PF00271 Helicase conserved C-terminal domain 493 609 3.0E-18 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 PANTHER PTHR24031:SF249 279 293 1.5E-114 T 16-09-2016 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 Gene3D G3DSA:2.40.50.140 55 149 1.7E-16 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 SUPERFAMILY SSF52540 190 464 1.17E-56 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 SUPERFAMILY SSF50249 17 184 3.94E-32 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 SUPERFAMILY SSF52540 463 675 3.0E-42 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 PANTHER PTHR24031 310 509 1.5E-114 T 16-09-2016 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 PANTHER PTHR24031 529 624 1.5E-114 T 16-09-2016 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 PANTHER PTHR24031 647 701 1.5E-114 T 16-09-2016 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 37 684 6.1E-215 T 16-09-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 Gene3D G3DSA:3.40.50.300 465 659 7.4E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 Pfam PF17191 RecG wedge domain 24 180 5.0E-11 T 16-09-2016 IPR033454 RecG, wedge domain BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 PANTHER PTHR24031:SF249 310 509 1.5E-114 T 16-09-2016 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 Pfam PF00270 DEAD/DEAH box helicase 284 442 5.6E-16 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 Gene3D G3DSA:3.40.50.300 265 464 2.8E-53 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 PANTHER PTHR24031 279 293 1.5E-114 T 16-09-2016 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 PANTHER PTHR24031:SF249 529 624 1.5E-114 T 16-09-2016 BER92_RS03600 3c9b19f61bfea79d318e715b5c3464e5 714 PANTHER PTHR24031:SF249 647 701 1.5E-114 T 16-09-2016 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 PANTHER PTHR23083 51 255 1.1E-19 T 16-09-2016 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 Pfam PF13181 Tetratricopeptide repeat 151 184 0.0014 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 Gene3D G3DSA:1.25.40.10 48 254 2.2E-27 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 Pfam PF13432 Tetratricopeptide repeat 50 80 0.011 T 16-09-2016 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 SUPERFAMILY SSF48452 66 253 1.29E-17 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 SMART SM00028 81 114 180.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 SMART SM00028 151 184 6.6E-4 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 SMART SM00028 185 218 350.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 SMART SM00028 47 80 380.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS10085 16e4ba8aaebb647ece1f236aa04dd3d4 262 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 38 250 2.1E-47 T 16-09-2016 IPR013360 Pilus biogenesis/stability type IV, PilW BER92_RS02755 67f3b1083a87290353f2f29fa9b9f09f 161 Pfam PF04093 rod shape-determining protein MreD 3 152 3.5E-35 T 16-09-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 BER92_RS02755 67f3b1083a87290353f2f29fa9b9f09f 161 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 6 151 5.2E-33 T 16-09-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 BER92_RS02755 67f3b1083a87290353f2f29fa9b9f09f 161 PIRSF PIRSF018472 1 160 1.2E-50 T 16-09-2016 IPR026034 Cell shape-determining protein MreD, proteobacterial type BER92_RS02755 67f3b1083a87290353f2f29fa9b9f09f 161 PANTHER PTHR37484 1 160 4.0E-65 T 16-09-2016 BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 SUPERFAMILY SSF51735 160 333 1.13E-47 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 151 1.4E-25 T 16-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 1.9E-222 T 16-09-2016 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00040+1.1.1.-|KEGG: 00051+1.1.1.-|KEGG: 00071+1.1.1.1|KEGG: 00140+1.1.1.-|KEGG: 00240+1.1.1.-|KEGG: 00253+1.1.1.-|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00362+1.1.1.-|KEGG: 00363+1.1.1.-|KEGG: 00365+1.1.1.-|KEGG: 00400+1.1.1.-|KEGG: 00520+1.1.1.-|KEGG: 00523+1.1.1.-|KEGG: 00591+1.1.1.-|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00622+1.1.1.-|KEGG: 00625+1.1.1.1+1.1.1.-|KEGG: 00626+1.1.1.1|KEGG: 00633+1.1.1.-|KEGG: 00640+1.1.1.-|KEGG: 00650+1.1.1.-|KEGG: 00680+1.1.1.284+1.1.1.-|KEGG: 00720+1.1.1.-|KEGG: 00750+1.1.1.-|KEGG: 00830+1.1.1.1+1.1.1.-|KEGG: 00950+1.1.1.-|KEGG: 00966+1.1.1.-|KEGG: 00980+1.1.1.1|KEGG: 00981+1.1.1.-|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 SUPERFAMILY SSF50129 1 186 1.05E-71 T 16-09-2016 IPR011032 GroES-like BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 Pfam PF00107 Zinc-binding dehydrogenase 197 328 9.9E-24 T 16-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 PANTHER PTHR11695:SF560 128 369 7.7E-219 T 16-09-2016 BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 Gene3D G3DSA:3.90.180.10 2 190 1.4E-68 T 16-09-2016 IPR011032 GroES-like BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 SUPERFAMILY SSF50129 318 369 3.91E-12 T 16-09-2016 IPR011032 GroES-like BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 Gene3D G3DSA:3.40.50.720 191 309 8.2E-43 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 PANTHER PTHR11695:SF560 15 108 7.7E-219 T 16-09-2016 BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 16-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 SMART SM00829 10 367 0.0034 T 16-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 PANTHER PTHR11695 128 369 7.7E-219 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS02985 d998924d2d0c7ed7be95bd7a865eb2c6 369 PANTHER PTHR11695 15 108 7.7E-219 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 40 483 37.242 T 16-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 456 473 - T 16-09-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 Gene3D G3DSA:3.40.50.10490 271 465 3.8E-100 T 16-09-2016 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 Gene3D G3DSA:3.40.50.10490 5 92 3.8E-100 T 16-09-2016 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 316 337 7.0E-46 T 16-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 424 442 7.0E-46 T 16-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 456 469 7.0E-46 T 16-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 134 153 7.0E-46 T 16-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 239 257 7.0E-46 T 16-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 442 456 7.0E-46 T 16-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 Pfam PF00342 Phosphoglucose isomerase 47 498 1.2E-148 T 16-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 PANTHER PTHR11469 1 503 2.2E-206 T 16-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 243 256 - T 16-09-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 SUPERFAMILY SSF53697 2 497 1.5E-150 T 16-09-2016 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 Gene3D G3DSA:1.10.1390.10 466 503 5.4E-13 T 16-09-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 PANTHER PTHR11469:SF1 1 503 2.2E-206 T 16-09-2016 BER92_RS10820 2288b4b9261d81ad4862d11c885ed36c 504 Gene3D G3DSA:3.40.50.10490 107 269 1.2E-49 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Pfam PF13087 AAA domain 842 1018 3.6E-13 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887 379 425 3.4E-99 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887 812 936 3.4E-99 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887 604 779 3.4E-99 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887 961 1034 3.4E-99 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887 301 350 3.4E-99 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Pfam PF13245 Part of AAA domain 317 398 3.1E-7 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Pfam PF13086 AAA domain 717 777 4.3E-8 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Gene3D G3DSA:3.40.50.300 332 376 7.3E-5 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887:SF350 604 779 3.4E-99 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887:SF350 961 1034 3.4E-99 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Gene3D G3DSA:3.40.50.300 826 859 3.8E-22 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Gene3D G3DSA:3.40.50.300 378 421 3.8E-22 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Gene3D G3DSA:3.40.50.300 491 517 3.8E-22 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Gene3D G3DSA:3.40.50.300 736 794 3.8E-22 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Gene3D G3DSA:3.40.50.300 297 331 3.8E-22 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 SUPERFAMILY SSF52540 951 1020 2.83E-5 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 SUPERFAMILY SSF52540 533 660 2.83E-5 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 Gene3D G3DSA:3.40.50.300 953 1019 7.9E-7 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 SUPERFAMILY SSF52540 381 406 2.22E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 SUPERFAMILY SSF52540 715 788 2.22E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 SUPERFAMILY SSF52540 826 1020 2.22E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 SUPERFAMILY SSF52540 304 343 2.22E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887:SF350 379 425 3.4E-99 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887:SF350 301 350 3.4E-99 T 16-09-2016 BER92_RS07460 add4e68470d801a89cdd5c9d21a5755d 1043 PANTHER PTHR10887:SF350 812 936 3.4E-99 T 16-09-2016 BER92_RS09295 9a7aec7d5d2990ba446cb27aff7275c9 472 SUPERFAMILY SSF56176 8 216 6.91E-67 T 16-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 BER92_RS09295 9a7aec7d5d2990ba446cb27aff7275c9 472 PANTHER PTHR11748 6 464 2.3E-228 T 16-09-2016 BER92_RS09295 9a7aec7d5d2990ba446cb27aff7275c9 472 Pfam PF02913 FAD linked oxidases, C-terminal domain 218 459 1.1E-55 T 16-09-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 BER92_RS09295 9a7aec7d5d2990ba446cb27aff7275c9 472 Pfam PF01565 FAD binding domain 40 178 5.8E-39 T 16-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BER92_RS09295 9a7aec7d5d2990ba446cb27aff7275c9 472 Gene3D G3DSA:3.30.465.10 97 214 5.8E-36 T 16-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 BER92_RS09295 9a7aec7d5d2990ba446cb27aff7275c9 472 PANTHER PTHR11748:SF76 6 464 2.3E-228 T 16-09-2016 BER92_RS09295 9a7aec7d5d2990ba446cb27aff7275c9 472 Gene3D G3DSA:3.30.43.10 6 94 7.5E-25 T 16-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 BER92_RS09295 9a7aec7d5d2990ba446cb27aff7275c9 472 Gene3D G3DSA:1.10.45.10 420 459 3.3E-10 T 16-09-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BER92_RS09295 9a7aec7d5d2990ba446cb27aff7275c9 472 SUPERFAMILY SSF55103 189 460 6.7E-56 T 16-09-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 Gene3D G3DSA:3.30.2060.10 136 214 1.1E-12 T 16-09-2016 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 PANTHER PTHR14025:SF21 389 1143 0.0 T 16-09-2016 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 Pfam PF02559 CarD-like/TRCF domain 486 580 7.6E-24 T 16-09-2016 IPR003711 CarD-like/TRCF domain BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 Pfam PF00270 DEAD/DEAH box helicase 612 770 9.5E-17 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SMART SM01058 485 582 4.3E-47 T 16-09-2016 IPR003711 CarD-like/TRCF domain BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 Pfam PF03461 TRCF domain 1016 1108 3.4E-26 T 16-09-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SUPERFAMILY SSF52540 788 995 3.59E-44 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SUPERFAMILY SSF52540 358 471 2.23E-21 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SUPERFAMILY SSF52540 24 346 6.02E-93 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SMART SM00490 832 916 7.4E-19 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 Gene3D G3DSA:3.40.50.300 805 962 3.3E-35 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 153 1088 0.0 T 16-09-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SUPERFAMILY SSF52540 529 790 2.44E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 Gene3D G3DSA:3.40.50.300 593 792 1.2E-56 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 PANTHER PTHR14025 389 1143 0.0 T 16-09-2016 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SUPERFAMILY SSF143517 1008 1153 1.44E-41 T 16-09-2016 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 27 1114 28.864 T 16-09-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SMART SM00487 606 796 3.5E-34 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SMART SM00982 1015 1115 3.3E-49 T 16-09-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 Pfam PF00271 Helicase conserved C-terminal domain 816 915 5.0E-17 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS13235 411854d6ed4082f10bc0b0351ad1ffcf 1155 SUPERFAMILY SSF141259 477 554 3.14E-21 T 16-09-2016 IPR003711 CarD-like/TRCF domain BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 SUPERFAMILY SSF63737 41 239 1.83E-37 T 16-09-2016 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 SUPERFAMILY SSF55486 244 485 3.66E-68 T 16-09-2016 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 Pfam PF09127 Leukotriene A4 hydrolase, C-terminal 512 631 7.4E-28 T 16-09-2016 IPR015211 Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal GO:0008237|GO:0008270 KEGG: 00590+3.3.2.6|UniPathway: UPA00878 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 Pfam PF01433 Peptidase family M1 52 416 2.8E-63 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 SUPERFAMILY SSF48371 495 631 2.59E-36 T 16-09-2016 IPR016024 Armadillo-type fold GO:0005488 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 PANTHER PTHR11533 11 632 8.3E-138 T 16-09-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 Gene3D G3DSA:1.10.390.10 336 486 1.1E-34 T 16-09-2016 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 296 306 1.4E-16 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 222 237 1.4E-16 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 177 192 1.4E-16 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 342 354 1.4E-16 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 323 338 1.4E-16 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS02725 90ea8ba5207b9750b8cbb45b4abfa424 644 SMART SM01263 492 631 9.4E-43 T 16-09-2016 IPR015211 Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal GO:0008237|GO:0008270 KEGG: 00590+3.3.2.6|UniPathway: UPA00878 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Pfam PF01926 50S ribosome-binding GTPase 219 311 3.4E-23 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 SUPERFAMILY SSF52540 73 149 1.01E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 SUPERFAMILY SSF52540 185 361 1.01E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Pfam PF10396 GTP-binding protein TrmE N-terminus 7 120 1.7E-37 T 16-09-2016 IPR018948 GTP-binding protein TrmE, N-terminal BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 219 239 3.6E-5 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 268 283 3.6E-5 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Gene3D G3DSA:3.40.50.300 220 246 1.7E-5 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 6 446 31.299 T 16-09-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Pfam PF12631 MnmE helical domain 123 443 4.6E-46 T 16-09-2016 IPR025867 MnmE, helical domain BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 PANTHER PTHR11649:SF56 9 446 1.3E-144 T 16-09-2016 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 PANTHER PTHR11649 9 446 1.3E-144 T 16-09-2016 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 220 338 1.5E-21 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Gene3D G3DSA:3.40.50.300 286 366 1.7E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 13 446 2.0E-95 T 16-09-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Gene3D G3DSA:3.30.1360.120 4 121 4.3E-42 T 16-09-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Gene3D G3DSA:1.20.120.430 247 271 3.3E-49 T 16-09-2016 IPR027368 tRNA modification GTPase MnmE domain 2 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Gene3D G3DSA:1.20.120.430 122 182 3.3E-49 T 16-09-2016 IPR027368 tRNA modification GTPase MnmE domain 2 BER92_RS19310 09fdd56023da6db3a72e0d3bcc513875 446 Gene3D G3DSA:1.20.120.430 377 446 3.3E-49 T 16-09-2016 IPR027368 tRNA modification GTPase MnmE domain 2 BER92_RS16510 78b467b67bc740a3b1c51185d0ca037b 268 SUPERFAMILY SSF51556 3 261 2.68E-80 T 16-09-2016 IPR032466 Metal-dependent hydrolase BER92_RS16510 78b467b67bc740a3b1c51185d0ca037b 268 PANTHER PTHR10060 1 263 4.3E-164 T 16-09-2016 IPR001130 TatD family GO:0016788 BER92_RS16510 78b467b67bc740a3b1c51185d0ca037b 268 PIRSF PIRSF005902 1 264 1.7E-72 T 16-09-2016 IPR001130 TatD family GO:0016788 BER92_RS16510 78b467b67bc740a3b1c51185d0ca037b 268 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 192 208 - T 16-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BER92_RS16510 78b467b67bc740a3b1c51185d0ca037b 268 Gene3D G3DSA:3.20.20.140 2 261 1.2E-85 T 16-09-2016 BER92_RS16510 78b467b67bc740a3b1c51185d0ca037b 268 PANTHER PTHR10060:SF13 1 263 4.3E-164 T 16-09-2016 BER92_RS16510 78b467b67bc740a3b1c51185d0ca037b 268 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 126 136 - T 16-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BER92_RS16510 78b467b67bc740a3b1c51185d0ca037b 268 Pfam PF01026 TatD related DNase 4 259 5.5E-69 T 16-09-2016 IPR001130 TatD family GO:0016788 BER92_RS01185 d501c96f8046e9616a9d470a63857d65 198 Gene3D G3DSA:3.90.470.20 96 191 3.5E-24 T 16-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 BER92_RS01185 d501c96f8046e9616a9d470a63857d65 198 SUPERFAMILY SSF56214 27 75 1.83E-7 T 16-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 BER92_RS01185 d501c96f8046e9616a9d470a63857d65 198 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 84 173 3.0E-17 T 16-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 BER92_RS01185 d501c96f8046e9616a9d470a63857d65 198 Gene3D G3DSA:3.90.470.20 30 95 6.2E-14 T 16-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 BER92_RS01185 d501c96f8046e9616a9d470a63857d65 198 SUPERFAMILY SSF56214 83 193 1.19E-27 T 16-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 BER92_RS01185 d501c96f8046e9616a9d470a63857d65 198 PANTHER PTHR12215 30 166 4.8E-32 T 16-09-2016 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 Pfam PF08448 PAS fold 13 119 1.3E-21 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 Pfam PF12833 Helix-turn-helix domain 153 228 1.2E-22 T 16-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 Gene3D G3DSA:1.10.10.60 127 183 1.6E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 SUPERFAMILY SSF55785 9 118 4.01E-15 T 16-09-2016 IPR000014 PAS domain BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 Gene3D G3DSA:3.30.450.20 8 118 1.8E-15 T 16-09-2016 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 PANTHER PTHR11019:SF113 87 236 1.3E-48 T 16-09-2016 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 SMART SM00091 7 75 1.8E-4 T 16-09-2016 IPR000014 PAS domain BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 SMART SM00342 146 228 1.6E-22 T 16-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 PANTHER PTHR11019 87 236 1.3E-48 T 16-09-2016 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 183 224 - T 16-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 SUPERFAMILY SSF46689 182 228 1.39E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 Gene3D G3DSA:1.10.10.60 184 229 6.5E-17 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 212 228 4.3E-7 T 16-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 197 212 4.3E-7 T 16-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BER92_RS15075 8473c0e2eadd64cc64864e6cd65045d1 241 SUPERFAMILY SSF46689 129 177 1.66E-6 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 408 51.031 T 16-09-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 Pfam PF01966 HD domain 231 347 3.9E-6 T 16-09-2016 IPR006674 HD domain BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 Gene3D G3DSA:3.30.460.10 1 122 1.1E-30 T 16-09-2016 BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 PANTHER PTHR13734:SF5 4 398 6.6E-78 T 16-09-2016 BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 SUPERFAMILY SSF81301 1 120 7.19E-29 T 16-09-2016 BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 PANTHER PTHR13734 4 398 6.6E-78 T 16-09-2016 BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 PIRSF PIRSF000813 1 408 2.7E-190 T 16-09-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 150 213 5.1E-15 T 16-09-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 Gene3D G3DSA:1.10.3090.10 123 363 2.5E-52 T 16-09-2016 BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 SUPERFAMILY SSF81891 121 403 1.57E-56 T 16-09-2016 BER92_RS16175 51db65e60612c74a90e7a54d944aae3e 408 Pfam PF01743 Poly A polymerase head domain 3 123 2.7E-18 T 16-09-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 SUPERFAMILY SSF118215 3 405 5.1E-97 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 PANTHER PTHR11958 1 409 2.1E-136 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 PRINTS PR00173 Glutamate-aspartate symporter signature 44 64 5.6E-34 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 PRINTS PR00173 Glutamate-aspartate symporter signature 334 353 5.6E-34 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 5.6E-34 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 PRINTS PR00173 Glutamate-aspartate symporter signature 151 173 5.6E-34 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 PRINTS PR00173 Glutamate-aspartate symporter signature 299 325 5.6E-34 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 PRINTS PR00173 Glutamate-aspartate symporter signature 361 381 5.6E-34 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 Pfam PF00375 Sodium:dicarboxylate symporter family 3 405 9.1E-107 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 Gene3D G3DSA:1.10.3860.10 3 406 3.3E-103 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS16965 83a647d20c48bb04d9bc18404dd582dc 409 PANTHER PTHR11958:SF44 1 409 2.1E-136 T 16-09-2016 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 SUPERFAMILY SSF52540 3 301 1.22E-82 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.2E-155 T 16-09-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 SUPERFAMILY SSF81271 279 360 1.07E-34 T 16-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 Pfam PF01926 50S ribosome-binding GTPase 5 128 6.7E-22 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 1.2E-37 T 16-09-2016 IPR013029 Domain of unknown function DUF933 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 Gene3D G3DSA:3.40.50.300 201 266 5.7E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 Gene3D G3DSA:3.40.50.300 4 130 5.7E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 Gene3D G3DSA:1.10.150.300 131 200 1.0E-25 T 16-09-2016 IPR023192 TGS-like domain BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 5.0E-34 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 5.0E-34 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 5.0E-34 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 5.0E-34 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 Gene3D G3DSA:3.10.20.30 267 363 1.7E-47 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 PANTHER PTHR23305:SF12 1 363 2.6E-207 T 16-09-2016 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.342 T 16-09-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 PIRSF PIRSF006641 1 363 4.1E-154 T 16-09-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 BER92_RS05070 479be8d81b7fecf41e957cb66050a899 363 PANTHER PTHR23305 1 363 2.6E-207 T 16-09-2016 BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 Pfam PF02347 Glycine cleavage system P-protein 463 746 7.6E-13 T 16-09-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 Pfam PF02347 Glycine cleavage system P-protein 19 439 1.3E-176 T 16-09-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 PANTHER PTHR11773 1 971 0.0 T 16-09-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 Gene3D G3DSA:3.40.640.10 89 306 1.2E-14 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 Gene3D G3DSA:3.40.640.10 514 753 2.0E-41 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 20 959 0.0 T 16-09-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 SUPERFAMILY SSF53383 938 960 7.84E-102 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 SUPERFAMILY SSF53383 486 895 7.84E-102 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 SUPERFAMILY SSF53383 20 439 4.56E-101 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 PANTHER PTHR11773:SF1 1 971 0.0 T 16-09-2016 BER92_RS15060 0e5404237eabbbed09c410cf2b72c0ff 971 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 11 965 25.597 T 16-09-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 PANTHER PTHR30033:SF1 1 624 7.5E-123 T 16-09-2016 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 PANTHER PTHR30033 1 624 7.5E-123 T 16-09-2016 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 4.6E-19 T 16-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 PRINTS PR01005 Flagellar hook-associated protein signature 403 420 4.6E-19 T 16-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 PRINTS PR01005 Flagellar hook-associated protein signature 122 142 4.6E-19 T 16-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 PRINTS PR01005 Flagellar hook-associated protein signature 155 179 4.6E-19 T 16-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 PRINTS PR01005 Flagellar hook-associated protein signature 353 375 4.6E-19 T 16-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 PRINTS PR01005 Flagellar hook-associated protein signature 48 70 4.6E-19 T 16-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 564 620 5.8E-12 T 16-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 SUPERFAMILY SSF64518 431 621 1.28E-26 T 16-09-2016 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 SUPERFAMILY SSF64518 133 435 6.93E-25 T 16-09-2016 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 Pfam PF00460 Flagella basal body rod protein 4 33 7.0E-9 T 16-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BER92_RS10290 3b6087f01898a67599fcc5530e98b2d2 624 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 3 363 6.7E-70 T 16-09-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BER92_RS07355 d7d3ddd47753febe1694fed17b8b7566 128 PANTHER PTHR30007:SF0 1 122 2.5E-20 T 16-09-2016 BER92_RS07355 d7d3ddd47753febe1694fed17b8b7566 128 Pfam PF01609 Transposase DDE domain 2 119 9.5E-12 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS07355 d7d3ddd47753febe1694fed17b8b7566 128 PANTHER PTHR30007 1 122 2.5E-20 T 16-09-2016 BER92_RS02465 d7d3ddd47753febe1694fed17b8b7566 128 PANTHER PTHR30007:SF0 1 122 2.5E-20 T 16-09-2016 BER92_RS02465 d7d3ddd47753febe1694fed17b8b7566 128 Pfam PF01609 Transposase DDE domain 2 119 9.5E-12 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS02465 d7d3ddd47753febe1694fed17b8b7566 128 PANTHER PTHR30007 1 122 2.5E-20 T 16-09-2016 BER92_RS17525 1f3afbb576f8c840b33236f0b55081bd 110 Pfam PF03091 CutA1 divalent ion tolerance protein 9 104 2.3E-32 T 16-09-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 BER92_RS17525 1f3afbb576f8c840b33236f0b55081bd 110 Gene3D G3DSA:3.30.70.830 6 108 5.4E-38 T 16-09-2016 BER92_RS17525 1f3afbb576f8c840b33236f0b55081bd 110 SUPERFAMILY SSF54913 4 107 5.19E-35 T 16-09-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta BER92_RS17525 1f3afbb576f8c840b33236f0b55081bd 110 PANTHER PTHR23419 5 110 1.7E-37 T 16-09-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 Pfam PF11784 Protein of unknown function (DUF3320) 1275 1321 7.1E-16 T 16-09-2016 IPR021754 Protein of unknown function DUF3320 BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 SUPERFAMILY SSF52980 1107 1221 2.52E-14 T 16-09-2016 IPR011335 Restriction endonuclease type II-like BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 PANTHER PTHR10887 868 1064 2.0E-35 T 16-09-2016 BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 Pfam PF13086 AAA domain 808 847 1.6E-8 T 16-09-2016 BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 Gene3D G3DSA:3.40.50.300 808 918 6.6E-23 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 PANTHER PTHR10887:SF340 868 1064 2.0E-35 T 16-09-2016 BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 PANTHER PTHR10887:SF340 692 847 2.0E-35 T 16-09-2016 BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 PANTHER PTHR10887:SF340 53 61 2.0E-35 T 16-09-2016 BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 SUPERFAMILY SSF52540 805 1098 1.86E-19 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 Pfam PF13087 AAA domain 885 1068 1.6E-10 T 16-09-2016 BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 PANTHER PTHR10887 692 847 2.0E-35 T 16-09-2016 BER92_RS10650 156fe070ba0c87f4969e6636e68daeab 1439 PANTHER PTHR10887 53 61 2.0E-35 T 16-09-2016 BER92_RS13655 0f16c7ac8809c32ef7ebeb19eb3b6105 191 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 11 185 1.2E-44 T 16-09-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 BER92_RS13655 0f16c7ac8809c32ef7ebeb19eb3b6105 191 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 14 186 3.7E-40 T 16-09-2016 IPR010664 Lipopolysaccharide assembly, LptC-related BER92_RS13655 0f16c7ac8809c32ef7ebeb19eb3b6105 191 PANTHER PTHR37481 2 191 2.7E-67 T 16-09-2016 BER92_RS13655 0f16c7ac8809c32ef7ebeb19eb3b6105 191 PANTHER PTHR37481:SF1 2 191 2.7E-67 T 16-09-2016 BER92_RS13655 0f16c7ac8809c32ef7ebeb19eb3b6105 191 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 2 188 21.926 T 16-09-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 BER92_RS09280 42ee26206212657bf4a1ca53d5e35b44 489 PANTHER PTHR11785:SF342 174 485 8.4E-174 T 16-09-2016 BER92_RS09280 42ee26206212657bf4a1ca53d5e35b44 489 PANTHER PTHR11785:SF342 1 144 8.4E-174 T 16-09-2016 BER92_RS09280 42ee26206212657bf4a1ca53d5e35b44 489 PIRSF PIRSF006060 19 488 7.0E-88 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS09280 42ee26206212657bf4a1ca53d5e35b44 489 Pfam PF13520 Amino acid permease 41 458 2.0E-59 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS09280 42ee26206212657bf4a1ca53d5e35b44 489 PANTHER PTHR11785 174 485 8.4E-174 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS09280 42ee26206212657bf4a1ca53d5e35b44 489 PANTHER PTHR11785 1 144 8.4E-174 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 SUPERFAMILY SSF56281 540 776 2.23E-43 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 Pfam PF00753 Metallo-beta-lactamase superfamily 546 715 7.7E-12 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 Pfam PF13567 Domain of unknown function (DUF4131) 35 205 3.5E-22 T 16-09-2016 IPR025405 Domain of unknown function DUF4131 BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 PANTHER PTHR30619:SF2 22 799 2.0E-218 T 16-09-2016 BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 PANTHER PTHR30619 22 799 2.0E-218 T 16-09-2016 BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 SMART SM00849 549 734 1.4E-11 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 162 763 1.2E-98 T 16-09-2016 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 267 443 1.0E-24 T 16-09-2016 IPR004477 ComEC/Rec2-related protein BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 Pfam PF03772 Competence protein 245 512 4.4E-60 T 16-09-2016 IPR004477 ComEC/Rec2-related protein BER92_RS11520 609b0d9bbd88b3d3ddf7a69349dfd5b3 803 Gene3D G3DSA:3.60.15.10 540 752 3.0E-29 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 64 875 29.49 T 16-09-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 Pfam PF01553 Acyltransferase 344 483 3.7E-23 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 SUPERFAMILY SSF69593 324 543 4.45E-28 T 16-09-2016 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 PANTHER PTHR12563:SF14 43 185 0.0 T 16-09-2016 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 PANTHER PTHR12563:SF14 204 883 0.0 T 16-09-2016 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 PIRSF PIRSF500064 47 888 0.0 T 16-09-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 69 871 0.0 T 16-09-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 SMART SM00563 359 486 7.8E-29 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 PIRSF PIRSF000437 73 886 0.0 T 16-09-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 Gene3D G3DSA:3.40.1130.10 344 492 3.2E-9 T 16-09-2016 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 PANTHER PTHR12563 204 883 0.0 T 16-09-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 BER92_RS00400 0405060c03fa0dc2def4742e5d85952e 889 PANTHER PTHR12563 43 185 0.0 T 16-09-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 Gene3D G3DSA:3.40.50.300 166 339 8.2E-14 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 SUPERFAMILY SSF52540 397 646 2.95E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 SUPERFAMILY SSF52540 164 235 2.95E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 SUPERFAMILY SSF52540 272 362 2.95E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 8 665 8.1E-159 T 16-09-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 Gene3D G3DSA:3.40.50.300 340 353 2.3E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 Gene3D G3DSA:3.40.50.300 582 652 2.3E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 Gene3D G3DSA:3.40.50.300 401 427 2.3E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 Gene3D G3DSA:3.40.50.300 461 507 2.3E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 Pfam PF13604 AAA domain 165 363 3.0E-27 T 16-09-2016 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 PANTHER PTHR10887:SF284 397 522 8.1E-63 T 16-09-2016 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 PANTHER PTHR10887 594 648 8.1E-63 T 16-09-2016 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 PANTHER PTHR10887 164 369 8.1E-63 T 16-09-2016 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 PANTHER PTHR10887 397 522 8.1E-63 T 16-09-2016 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 PANTHER PTHR10887:SF284 594 648 8.1E-63 T 16-09-2016 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 PANTHER PTHR10887:SF284 164 369 8.1E-63 T 16-09-2016 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 15 665 49.639 T 16-09-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 BER92_RS19185 925cefc91bfd9edc00d27a77c3c05d92 691 Pfam PF13538 UvrD-like helicase C-terminal domain 594 640 5.4E-13 T 16-09-2016 IPR027785 UvrD-like helicase C-terminal domain BER92_RS10310 8f69699bea7bf6e1d3f8cba1b6bb3489 137 SUPERFAMILY SSF101116 11 127 5.36E-33 T 16-09-2016 IPR003713 Flagellar protein FliS GO:0044780 BER92_RS10310 8f69699bea7bf6e1d3f8cba1b6bb3489 137 PIRSF PIRSF039090 3 137 8.4E-46 T 16-09-2016 IPR003713 Flagellar protein FliS GO:0044780 BER92_RS10310 8f69699bea7bf6e1d3f8cba1b6bb3489 137 TIGRFAM TIGR00208 fliS: flagellar protein FliS 12 127 1.9E-25 T 16-09-2016 IPR003713 Flagellar protein FliS GO:0044780 BER92_RS10310 8f69699bea7bf6e1d3f8cba1b6bb3489 137 Gene3D G3DSA:1.20.120.340 10 130 9.2E-39 T 16-09-2016 IPR003713 Flagellar protein FliS GO:0044780 BER92_RS10310 8f69699bea7bf6e1d3f8cba1b6bb3489 137 Pfam PF02561 Flagellar protein FliS 10 126 1.9E-33 T 16-09-2016 IPR003713 Flagellar protein FliS GO:0044780 BER92_RS10310 8f69699bea7bf6e1d3f8cba1b6bb3489 137 PANTHER PTHR34773 1 135 2.6E-41 T 16-09-2016 BER92_RS04040 028df6adfdbacd93ee234e9aa217238d 87 Pfam PF01527 Transposase 2 70 1.8E-22 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS04040 028df6adfdbacd93ee234e9aa217238d 87 PANTHER PTHR33609 1 87 5.6E-44 T 16-09-2016 BER92_RS04040 028df6adfdbacd93ee234e9aa217238d 87 Gene3D G3DSA:1.10.10.60 7 83 1.2E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS04040 028df6adfdbacd93ee234e9aa217238d 87 SUPERFAMILY SSF46689 2 82 4.84E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10615 2dca5f95d1cbc2cfb27a079528168ba0 111 PANTHER PTHR10057:SF0 14 73 1.0E-12 T 16-09-2016 BER92_RS10615 2dca5f95d1cbc2cfb27a079528168ba0 111 PANTHER PTHR10057 14 73 1.0E-12 T 16-09-2016 IPR004307 TspO/MBR-related protein GO:0016021 BER92_RS10615 2dca5f95d1cbc2cfb27a079528168ba0 111 Pfam PF03073 TspO/MBR family 14 83 1.2E-17 T 16-09-2016 IPR004307 TspO/MBR-related protein GO:0016021 BER92_RS16945 a4a2f982cb35e5d682fc41d0224ec681 326 SUPERFAMILY SSF141523 191 323 1.26E-26 T 16-09-2016 BER92_RS16945 a4a2f982cb35e5d682fc41d0224ec681 326 Gene3D G3DSA:1.10.101.10 55 105 9.2E-9 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS16945 a4a2f982cb35e5d682fc41d0224ec681 326 PANTHER PTHR30582 7 326 5.1E-117 T 16-09-2016 BER92_RS16945 a4a2f982cb35e5d682fc41d0224ec681 326 Pfam PF03734 L,D-transpeptidase catalytic domain 194 323 9.5E-17 T 16-09-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 BER92_RS16945 a4a2f982cb35e5d682fc41d0224ec681 326 Gene3D G3DSA:2.40.440.10 189 324 4.3E-29 T 16-09-2016 BER92_RS16945 a4a2f982cb35e5d682fc41d0224ec681 326 SUPERFAMILY SSF47090 54 104 3.61E-10 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS16945 a4a2f982cb35e5d682fc41d0224ec681 326 PANTHER PTHR30582:SF1 7 326 5.1E-117 T 16-09-2016 BER92_RS16945 a4a2f982cb35e5d682fc41d0224ec681 326 Pfam PF01471 Putative peptidoglycan binding domain 55 103 2.7E-8 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 PANTHER PTHR10992:SF885 1 268 4.1E-102 T 16-09-2016 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 PRINTS PR00412 Epoxide hydrolase signature 243 265 1.8E-7 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 PRINTS PR00412 Epoxide hydrolase signature 104 117 1.8E-7 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 PRINTS PR00412 Epoxide hydrolase signature 45 60 1.8E-7 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 PANTHER PTHR10992 1 268 4.1E-102 T 16-09-2016 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 Pfam PF00561 alpha/beta hydrolase fold 23 128 4.8E-16 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 Gene3D G3DSA:3.40.50.1820 3 267 3.9E-50 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 213 227 9.7E-9 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 103 9.7E-9 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 9.7E-9 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 9.7E-9 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS09455 7a74c212e9254334927aaab39a0a7295 271 SUPERFAMILY SSF53474 1 267 2.23E-54 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS17340 0dc25bba54c50c8feb14a9ec6e62de53 512 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 348 418 2.7E-12 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS17340 0dc25bba54c50c8feb14a9ec6e62de53 512 SUPERFAMILY SSF52540 184 433 4.69E-13 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17340 0dc25bba54c50c8feb14a9ec6e62de53 512 Gene3D G3DSA:3.40.50.300 353 431 7.0E-12 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17340 0dc25bba54c50c8feb14a9ec6e62de53 512 Gene3D G3DSA:3.40.50.300 182 261 7.0E-12 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06180 5030f0d895d392cbc88475fbf1f7e5a5 92 PANTHER PTHR36965 2 92 1.1E-51 T 16-09-2016 BER92_RS06180 5030f0d895d392cbc88475fbf1f7e5a5 92 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 77 9.0E-39 T 16-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BER92_RS06180 5030f0d895d392cbc88475fbf1f7e5a5 92 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.588 T 16-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BER92_RS06180 5030f0d895d392cbc88475fbf1f7e5a5 92 PANTHER PTHR36965:SF1 2 92 1.1E-51 T 16-09-2016 BER92_RS06180 5030f0d895d392cbc88475fbf1f7e5a5 92 SUPERFAMILY SSF111148 1 88 3.4E-35 T 16-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BER92_RS06180 5030f0d895d392cbc88475fbf1f7e5a5 92 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 7.7E-39 T 16-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BER92_RS06180 5030f0d895d392cbc88475fbf1f7e5a5 92 Gene3D G3DSA:1.10.3880.10 1 88 1.1E-37 T 16-09-2016 BER92_RS06180 5030f0d895d392cbc88475fbf1f7e5a5 92 PIRSF PIRSF029827 1 90 4.8E-40 T 16-09-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 SMART SM01232 131 223 2.5E-46 T 16-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 ProSitePatterns PS01242 Zinc finger FPG-type signature. 246 270 - T 16-09-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 SUPERFAMILY SSF46946 132 223 5.59E-29 T 16-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 271 43.94 T 16-09-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 Gene3D G3DSA:3.20.190.10 2 131 6.8E-39 T 16-09-2016 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 PANTHER PTHR22993 1 271 6.8E-128 T 16-09-2016 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 270 8.5E-88 T 16-09-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 PANTHER PTHR22993:SF15 1 271 6.8E-128 T 16-09-2016 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 SUPERFAMILY SSF81624 2 140 1.44E-41 T 16-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 SUPERFAMILY SSF57716 219 270 8.84E-16 T 16-09-2016 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 131 220 8.4E-23 T 16-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 Pfam PF06827 Zinc finger found in FPG and IleRS 243 270 1.9E-7 T 16-09-2016 IPR010663 Zinc finger, FPG/IleRS-type BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 Gene3D G3DSA:1.10.8.50 132 271 8.2E-49 T 16-09-2016 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 SMART SM00898 2 117 8.1E-55 T 16-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BER92_RS14180 a8fcfd09340e31bac36e564706fe6941 271 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 115 1.2E-33 T 16-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 PANTHER PTHR30069 19 175 1.6E-12 T 16-09-2016 BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 SUPERFAMILY SSF56935 267 465 1.56E-73 T 16-09-2016 BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 SUPERFAMILY SSF56935 23 228 1.56E-73 T 16-09-2016 BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 SUPERFAMILY SSF56935 507 860 1.56E-73 T 16-09-2016 BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 Pfam PF00593 TonB dependent receptor 583 861 1.2E-25 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 31 861 8.4E-180 T 16-09-2016 IPR010104 Bacterial TonB-dependent receptor BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 Gene3D G3DSA:2.170.130.10 51 158 3.6E-17 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 155 1.9E-14 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 Gene3D G3DSA:2.40.170.20 510 861 1.4E-55 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS01850 da4394b2ed92fac9c10f27ee35687057 862 Gene3D G3DSA:2.40.170.20 159 472 1.4E-55 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS18035 6899a98cc5e51977250b979bde3a0d2c 450 SUPERFAMILY SSF55931 113 448 4.32E-102 T 16-09-2016 BER92_RS18035 6899a98cc5e51977250b979bde3a0d2c 450 Pfam PF00120 Glutamine synthetase, catalytic domain 114 443 1.6E-100 T 16-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18035 6899a98cc5e51977250b979bde3a0d2c 450 SMART SM01230 112 367 3.2E-96 T 16-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18035 6899a98cc5e51977250b979bde3a0d2c 450 PANTHER PTHR20852:SF35 1 449 5.9E-153 T 16-09-2016 BER92_RS18035 6899a98cc5e51977250b979bde3a0d2c 450 Gene3D G3DSA:3.30.590.10 115 436 2.4E-95 T 16-09-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 BER92_RS18035 6899a98cc5e51977250b979bde3a0d2c 450 Gene3D G3DSA:3.10.20.70 10 114 8.7E-10 T 16-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18035 6899a98cc5e51977250b979bde3a0d2c 450 PANTHER PTHR20852 1 449 5.9E-153 T 16-09-2016 BER92_RS18035 6899a98cc5e51977250b979bde3a0d2c 450 SUPERFAMILY SSF54368 11 110 8.11E-18 T 16-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS03575 d57816f4c6278b62cb445d5a1dd8e795 286 Pfam PF08340 Domain of unknown function (DUF1732) 202 286 5.1E-35 T 16-09-2016 IPR013551 Domain of unknown function DUF1732 BER92_RS03575 d57816f4c6278b62cb445d5a1dd8e795 286 Pfam PF03755 YicC-like family, N-terminal region 2 152 4.6E-34 T 16-09-2016 IPR013527 YicC-like, N-terminal BER92_RS03575 d57816f4c6278b62cb445d5a1dd8e795 286 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 286 7.8E-80 T 16-09-2016 IPR005229 Conserved hypothetical protein CHP00255 BER92_RS03575 d57816f4c6278b62cb445d5a1dd8e795 286 PANTHER PTHR30636 1 286 9.1E-100 T 16-09-2016 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 Gene3D G3DSA:2.40.170.20 563 911 2.2E-60 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 Gene3D G3DSA:2.40.170.20 437 509 2.2E-60 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 Gene3D G3DSA:2.40.170.20 183 247 2.2E-60 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 Gene3D G3DSA:2.40.170.20 280 396 2.2E-60 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 Pfam PF00593 TonB dependent receptor 630 911 4.3E-31 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 67 - T 16-09-2016 IPR010916 TonB box, conserved site BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 59 912 1.1E-254 T 16-09-2016 IPR010104 Bacterial TonB-dependent receptor BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 PANTHER PTHR40980:SF3 7 913 1.1E-153 T 16-09-2016 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 Gene3D G3DSA:2.170.130.10 51 182 3.2E-15 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 SUPERFAMILY SSF56935 49 248 5.19E-86 T 16-09-2016 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 SUPERFAMILY SSF56935 531 912 5.19E-86 T 16-09-2016 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 SUPERFAMILY SSF56935 281 492 5.19E-86 T 16-09-2016 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 Pfam PF07715 TonB-dependent Receptor Plug Domain 78 179 2.0E-12 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS10895 3f6e1b26ef8d0ef28074af502bcd8bf0 913 PANTHER PTHR40980 7 913 1.1E-153 T 16-09-2016 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 PANTHER PTHR11757:SF13 22 695 0.0 T 16-09-2016 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 25 421 3.6E-34 T 16-09-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 PANTHER PTHR11757 22 695 0.0 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 SUPERFAMILY SSF53474 441 695 8.78E-53 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 555 575 2.4E-42 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 609 624 2.4E-42 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 525 544 2.4E-42 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 628 650 2.4E-42 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 470 488 2.4E-42 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 497 521 2.4E-42 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 Pfam PF00326 Prolyl oligopeptidase family 494 695 2.6E-48 T 16-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 Gene3D G3DSA:3.40.50.1820 359 695 4.8E-91 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 Gene3D G3DSA:2.130.10.120 87 240 9.8E-7 T 16-09-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 BER92_RS02640 aaf7cdeb4ca13ba108f3e1b2f70053df 697 SUPERFAMILY SSF50993 27 434 2.54E-62 T 16-09-2016 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PANTHER PTHR10169:SF45 1 623 0.0 T 16-09-2016 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR00418 DNA topoisomerase II family signature 66 79 2.6E-57 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR00418 DNA topoisomerase II family signature 413 427 2.6E-57 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR00418 DNA topoisomerase II family signature 516 528 2.6E-57 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR00418 DNA topoisomerase II family signature 109 123 2.6E-57 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR00418 DNA topoisomerase II family signature 496 513 2.6E-57 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR00418 DNA topoisomerase II family signature 31 46 2.6E-57 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR00418 DNA topoisomerase II family signature 265 278 2.6E-57 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR00418 DNA topoisomerase II family signature 478 494 2.6E-57 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR00418 DNA topoisomerase II family signature 561 577 2.6E-57 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 171 6.0E-18 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS08725 2023225d99af16a9624282c641e758dd 629 Pfam PF01751 Toprim domain 412 510 9.3E-12 T 16-09-2016 IPR006171 Toprim domain BER92_RS08725 2023225d99af16a9624282c641e758dd 629 SMART SM00387 27 173 3.0E-19 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 337 360 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 536 558 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 447 468 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 361 386 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 310 325 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 293 309 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 583 597 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 502 518 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PRINTS PR01098 Topoisomerase IV subunit B signature 468 480 1.1E-95 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 Gene3D G3DSA:3.30.565.10 15 213 2.8E-73 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS08725 2023225d99af16a9624282c641e758dd 629 ProSitePatterns PS00177 DNA topoisomerase II signature. 415 423 - T 16-09-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 624 2.1E-284 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 SUPERFAMILY SSF55874 4 215 1.36E-64 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS08725 2023225d99af16a9624282c641e758dd 629 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 627 45.89 T 16-09-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 619 1.4E-22 T 16-09-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 SMART SM00433 34 623 8.1E-197 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 Gene3D G3DSA:3.40.50.670 397 610 1.2E-73 T 16-09-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 PANTHER PTHR10169 1 623 0.0 T 16-09-2016 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 Gene3D G3DSA:3.30.230.10 216 389 3.3E-44 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS08725 2023225d99af16a9624282c641e758dd 629 Pfam PF00204 DNA gyrase B 218 383 1.7E-36 T 16-09-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 SUPERFAMILY SSF56719 387 620 2.17E-73 T 16-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 BER92_RS08725 2023225d99af16a9624282c641e758dd 629 SUPERFAMILY SSF54211 217 380 2.47E-42 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS02775 d18f4d2c5d87d3f0c2657c9f8ace9d5d 379 Gene3D G3DSA:1.10.530.10 259 374 2.6E-54 T 16-09-2016 BER92_RS02775 d18f4d2c5d87d3f0c2657c9f8ace9d5d 379 Gene3D G3DSA:1.10.530.10 109 165 2.6E-54 T 16-09-2016 BER92_RS02775 d18f4d2c5d87d3f0c2657c9f8ace9d5d 379 PANTHER PTHR30163 1 375 3.6E-188 T 16-09-2016 IPR011757 Lytic transglycosylase MltB BER92_RS02775 d18f4d2c5d87d3f0c2657c9f8ace9d5d 379 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 70 371 2.9E-123 T 16-09-2016 IPR011757 Lytic transglycosylase MltB BER92_RS02775 d18f4d2c5d87d3f0c2657c9f8ace9d5d 379 PANTHER PTHR30163:SF0 1 375 3.6E-188 T 16-09-2016 BER92_RS02775 d18f4d2c5d87d3f0c2657c9f8ace9d5d 379 Pfam PF13406 Transglycosylase SLT domain 68 369 5.1E-91 T 16-09-2016 IPR031304 Transglycosylase SLT domain 2 BER92_RS02775 d18f4d2c5d87d3f0c2657c9f8ace9d5d 379 SUPERFAMILY SSF53955 70 373 7.87E-82 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS09175 4e2f21dc6dd9e8382a02567562310b22 156 Pfam PF01609 Transposase DDE domain 1 153 4.2E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09175 4e2f21dc6dd9e8382a02567562310b22 156 PANTHER PTHR30007:SF0 1 155 1.8E-29 T 16-09-2016 BER92_RS09175 4e2f21dc6dd9e8382a02567562310b22 156 PANTHER PTHR30007 1 155 1.8E-29 T 16-09-2016 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 PANTHER PTHR22573 302 780 3.9E-218 T 16-09-2016 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 Gene3D G3DSA:3.30.310.50 685 776 3.8E-25 T 16-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 Gene3D G3DSA:3.40.120.10 324 478 4.7E-34 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 PANTHER PTHR22573:SF28 302 780 3.9E-218 T 16-09-2016 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 688 766 4.3E-12 T 16-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 324 452 3.6E-34 T 16-09-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 471 568 5.1E-29 T 16-09-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 SUPERFAMILY SSF55957 682 779 1.45E-20 T 16-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 SUPERFAMILY SSF53738 573 679 9.81E-34 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 Gene3D G3DSA:3.40.120.10 487 564 1.4E-33 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 412 426 2.9E-22 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 519 532 2.9E-22 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 485 504 2.9E-22 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 548 563 2.9E-22 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 573 682 1.8E-23 T 16-09-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 SUPERFAMILY SSF53738 470 570 2.16E-33 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 Gene3D G3DSA:3.40.120.10 566 682 1.6E-44 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS18405 4094fc0c10eb6385900b051e4fcf3ed0 781 SUPERFAMILY SSF53738 319 492 3.69E-37 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS05410 ffc7d0f50874e0fc7a60c6e0c2975161 97 PANTHER PTHR10245 1 88 2.8E-24 T 16-09-2016 BER92_RS05410 ffc7d0f50874e0fc7a60c6e0c2975161 97 SMART SM00530 28 83 8.0E-8 T 16-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BER92_RS05410 ffc7d0f50874e0fc7a60c6e0c2975161 97 SUPERFAMILY SSF47413 20 86 4.22E-15 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS05410 ffc7d0f50874e0fc7a60c6e0c2975161 97 Gene3D G3DSA:1.10.260.40 22 88 2.3E-17 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS05410 ffc7d0f50874e0fc7a60c6e0c2975161 97 PANTHER PTHR10245:SF41 1 88 2.8E-24 T 16-09-2016 BER92_RS05410 ffc7d0f50874e0fc7a60c6e0c2975161 97 Pfam PF13560 Helix-turn-helix domain 24 72 6.1E-10 T 16-09-2016 BER92_RS00860 3ab24063e498f1e43a0eb4c6ebd84b3a 119 PANTHER PTHR35862:SF2 1 113 6.0E-33 T 16-09-2016 BER92_RS00860 3ab24063e498f1e43a0eb4c6ebd84b3a 119 PANTHER PTHR35862 1 113 6.0E-33 T 16-09-2016 BER92_RS00860 3ab24063e498f1e43a0eb4c6ebd84b3a 119 SUPERFAMILY SSF160719 8 99 4.45E-26 T 16-09-2016 BER92_RS00860 3ab24063e498f1e43a0eb4c6ebd84b3a 119 Pfam PF04965 Gene 25-like lysozyme 14 96 6.6E-13 T 16-09-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD BER92_RS00860 3ab24063e498f1e43a0eb4c6ebd84b3a 119 Gene3D G3DSA:3.10.450.40 7 115 1.5E-30 T 16-09-2016 BER92_RS05660 75bbd52a1183cf9f4bad8f240bd83ed9 212 SUPERFAMILY SSF109604 5 173 7.53E-32 T 16-09-2016 BER92_RS05660 75bbd52a1183cf9f4bad8f240bd83ed9 212 PANTHER PTHR21262 1 195 2.1E-92 T 16-09-2016 BER92_RS05660 75bbd52a1183cf9f4bad8f240bd83ed9 212 Pfam PF13328 HD domain 11 166 1.6E-28 T 16-09-2016 IPR003607 HD/PDEase domain BER92_RS05660 75bbd52a1183cf9f4bad8f240bd83ed9 212 PANTHER PTHR21262:SF16 1 195 2.1E-92 T 16-09-2016 BER92_RS05660 75bbd52a1183cf9f4bad8f240bd83ed9 212 SMART SM00471 27 148 0.0026 T 16-09-2016 IPR003607 HD/PDEase domain BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 Pfam PF01327 Polypeptide deformylase 3 157 2.4E-42 T 16-09-2016 IPR023635 Peptide deformylase BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 Gene3D G3DSA:3.90.45.10 4 164 4.3E-49 T 16-09-2016 IPR023635 Peptide deformylase BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 SUPERFAMILY SSF56420 1 163 1.96E-51 T 16-09-2016 IPR023635 Peptide deformylase BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 PANTHER PTHR10458 1 165 2.1E-85 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 PRINTS PR01576 Peptide deformylase signature 33 62 4.6E-27 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 PRINTS PR01576 Peptide deformylase signature 109 127 4.6E-27 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 PRINTS PR01576 Peptide deformylase signature 128 157 4.6E-27 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 PRINTS PR01576 Peptide deformylase signature 97 108 4.6E-27 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 PIRSF PIRSF004749 1 166 2.1E-41 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 PANTHER PTHR10458:SF4 1 165 2.1E-85 T 16-09-2016 BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 3 160 1.2E-31 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS04465 6abf068f6fd91534755636235e4298f9 171 Hamap MF_00163 Peptide deformylase [def]. 1 169 24.149 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 SUPERFAMILY SSF90123 18 332 1.57E-66 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 Pfam PF00664 ABC transporter transmembrane region 31 298 1.6E-39 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 Gene3D G3DSA:1.20.1560.10 18 333 2.3E-65 T 16-09-2016 BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 SMART SM00382 372 559 9.5E-18 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 Pfam PF00005 ABC transporter 363 513 1.1E-31 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 Gene3D G3DSA:3.40.50.300 344 577 6.9E-81 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 ProSitePatterns PS00211 ABC transporters family signature. 485 499 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 PANTHER PTHR24221 6 588 2.2E-207 T 16-09-2016 BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 16 586 2.6E-240 T 16-09-2016 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 BER92_RS11505 9f8d73f08bdc5bad9b41da117744c9a5 589 SUPERFAMILY SSF52540 335 584 1.88E-87 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00905 ad4c4d40f05579bcd6784017c548f2a3 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS00905 ad4c4d40f05579bcd6784017c548f2a3 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS00905 ad4c4d40f05579bcd6784017c548f2a3 455 Pfam PF01609 Transposase DDE domain 286 421 1.0E-9 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS00905 ad4c4d40f05579bcd6784017c548f2a3 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS08790 9c426b3763be48f77d63d81f4d7002d8 259 Gene3D G3DSA:3.10.350.10 62 105 9.6E-17 T 16-09-2016 IPR018392 LysM domain BER92_RS08790 9c426b3763be48f77d63d81f4d7002d8 259 Gene3D G3DSA:2.70.70.10 137 258 5.9E-37 T 16-09-2016 BER92_RS08790 9c426b3763be48f77d63d81f4d7002d8 259 SUPERFAMILY SSF51261 61 256 4.71E-45 T 16-09-2016 IPR011055 Duplicated hybrid motif BER92_RS08790 9c426b3763be48f77d63d81f4d7002d8 259 PANTHER PTHR21666 140 257 2.3E-37 T 16-09-2016 BER92_RS08790 9c426b3763be48f77d63d81f4d7002d8 259 SMART SM00257 60 104 1.4E-14 T 16-09-2016 IPR018392 LysM domain BER92_RS08790 9c426b3763be48f77d63d81f4d7002d8 259 Pfam PF01551 Peptidase family M23 158 252 1.3E-28 T 16-09-2016 IPR016047 Peptidase M23 BER92_RS08790 9c426b3763be48f77d63d81f4d7002d8 259 Pfam PF01476 LysM domain 62 102 5.6E-13 T 16-09-2016 IPR018392 LysM domain BER92_RS01835 396b88918604e880f6b9862185d45955 831 Gene3D G3DSA:3.40.50.300 308 430 9.8E-24 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01835 396b88918604e880f6b9862185d45955 831 PANTHER PTHR24031:SF122 52 598 4.5E-145 T 16-09-2016 BER92_RS01835 396b88918604e880f6b9862185d45955 831 Pfam PF00270 DEAD/DEAH box helicase 81 249 2.3E-26 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS01835 396b88918604e880f6b9862185d45955 831 PANTHER PTHR24031 52 598 4.5E-145 T 16-09-2016 BER92_RS01835 396b88918604e880f6b9862185d45955 831 Pfam PF00271 Helicase conserved C-terminal domain 308 412 1.5E-14 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS01835 396b88918604e880f6b9862185d45955 831 SMART SM00487 75 279 5.0E-29 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS01835 396b88918604e880f6b9862185d45955 831 SMART SM00490 325 413 5.1E-18 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS01835 396b88918604e880f6b9862185d45955 831 SUPERFAMILY SSF52540 92 251 2.3E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01835 396b88918604e880f6b9862185d45955 831 SUPERFAMILY SSF52540 280 419 2.3E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01835 396b88918604e880f6b9862185d45955 831 Gene3D G3DSA:3.40.50.300 62 251 1.0E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01835 396b88918604e880f6b9862185d45955 831 Pfam PF09369 Domain of unknown function (DUF1998) 677 782 5.7E-11 T 16-09-2016 IPR018973 DEAD/DEAH-box helicase, putative BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 Pfam PF03466 LysR substrate binding domain 101 309 5.5E-32 T 16-09-2016 IPR005119 LysR, substrate-binding BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 Gene3D G3DSA:1.10.10.10 15 99 4.2E-21 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 Gene3D G3DSA:3.40.190.10 197 276 1.8E-12 T 16-09-2016 BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 SUPERFAMILY SSF46785 11 124 4.0E-22 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 1.3E-5 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 1.3E-5 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 1.3E-5 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 Gene3D G3DSA:3.40.190.10 102 196 3.4E-20 T 16-09-2016 BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 PANTHER PTHR30126 13 323 6.4E-155 T 16-09-2016 BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 PANTHER PTHR30126:SF3 13 323 6.4E-155 T 16-09-2016 BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 SUPERFAMILY SSF53850 104 307 7.6E-35 T 16-09-2016 BER92_RS10925 b7057a1c822aa8fb7f236036301c8fe2 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 75 4.2E-17 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PANTHER PTHR10133 2 276 0.0 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Gene3D G3DSA:3.30.420.10 335 549 3.5E-81 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 SUPERFAMILY SSF56672 529 935 9.12E-151 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Gene3D G3DSA:3.40.50.1010 3 179 9.7E-64 T 16-09-2016 IPR029060 PIN domain-like BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PANTHER PTHR10133 323 934 0.0 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Gene3D G3DSA:1.10.150.20 719 825 2.8E-34 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PANTHER PTHR10133:SF27 2 276 0.0 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 SMART SM00474 337 524 8.9E-32 T 16-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Gene3D G3DSA:3.30.70.370 671 718 5.1E-63 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Gene3D G3DSA:3.30.70.370 826 935 5.1E-63 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 SUPERFAMILY SSF47807 166 280 3.89E-31 T 16-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 SMART SM00279 168 203 8.6E-14 T 16-09-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Pfam PF00476 DNA polymerase family A 558 932 2.6E-144 T 16-09-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PRINTS PR00868 DNA-polymerase family A (pol I) signature 685 700 1.5E-78 T 16-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PRINTS PR00868 DNA-polymerase family A (pol I) signature 761 786 1.5E-78 T 16-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PRINTS PR00868 DNA-polymerase family A (pol I) signature 662 684 1.5E-78 T 16-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PRINTS PR00868 DNA-polymerase family A (pol I) signature 707 730 1.5E-78 T 16-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PRINTS PR00868 DNA-polymerase family A (pol I) signature 852 868 1.5E-78 T 16-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PRINTS PR00868 DNA-polymerase family A (pol I) signature 820 831 1.5E-78 T 16-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PRINTS PR00868 DNA-polymerase family A (pol I) signature 737 750 1.5E-78 T 16-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PRINTS PR00868 DNA-polymerase family A (pol I) signature 798 809 1.5E-78 T 16-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PRINTS PR00868 DNA-polymerase family A (pol I) signature 882 895 1.5E-78 T 16-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 3 165 4.6E-48 T 16-09-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 SUPERFAMILY SSF88723 1 165 9.25E-52 T 16-09-2016 IPR029060 PIN domain-like BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Pfam PF01612 3'-5' exonuclease 337 523 6.6E-35 T 16-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 SUPERFAMILY SSF53098 334 524 6.33E-52 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Gene3D G3DSA:1.10.150.20 180 241 2.6E-27 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 PANTHER PTHR10133:SF27 323 934 0.0 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Gene3D G3DSA:1.20.1060.10 550 670 5.0E-37 T 16-09-2016 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 ProSitePatterns PS00447 DNA polymerase family A signature. 761 780 - T 16-09-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 260 9.4E-28 T 16-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 SMART SM00482 693 899 2.3E-103 T 16-09-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 SMART SM00475 2 256 1.3E-110 T 16-09-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 BER92_RS01640 8f23385b73f84485bebfd8843bcc3087 935 TIGRFAM TIGR00593 pola: DNA polymerase I 4 935 4.7E-266 T 16-09-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PANTHER PTHR24322:SF635 12 138 6.5E-69 T 16-09-2016 BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 10 245 1.3E-98 T 16-09-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 5.2E-48 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 5.2E-48 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 5.2E-48 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 5.2E-48 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 5.2E-48 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.2E-48 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 SUPERFAMILY SSF51735 6 246 3.42E-83 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PANTHER PTHR24322:SF635 154 186 6.5E-69 T 16-09-2016 BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PANTHER PTHR24322 12 138 6.5E-69 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PANTHER PTHR24322 154 186 6.5E-69 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 190 3.0E-5 T 16-09-2016 BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 Gene3D G3DSA:3.40.50.720 2 246 4.2E-86 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.1E-15 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.1E-15 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.1E-15 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS14005 5dc9c6a4a764a0712dea0a505fe062ef 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 244 9.9E-65 T 16-09-2016 BER92_RS00215 d1bdb1808643e986b0e7fb155e367b12 241 Gene3D G3DSA:3.40.470.10 7 228 1.0E-97 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS00215 d1bdb1808643e986b0e7fb155e367b12 241 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 12 219 2.6E-78 T 16-09-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 BER92_RS00215 d1bdb1808643e986b0e7fb155e367b12 241 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 64 73 - T 16-09-2016 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 BER92_RS00215 d1bdb1808643e986b0e7fb155e367b12 241 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 11 227 39.707 T 16-09-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 BER92_RS00215 d1bdb1808643e986b0e7fb155e367b12 241 SUPERFAMILY SSF52141 9 228 1.7E-90 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS00215 d1bdb1808643e986b0e7fb155e367b12 241 PANTHER PTHR11264 7 236 4.9E-138 T 16-09-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 BER92_RS00215 d1bdb1808643e986b0e7fb155e367b12 241 Pfam PF03167 Uracil DNA glycosylase superfamily 60 214 2.5E-24 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS00215 d1bdb1808643e986b0e7fb155e367b12 241 SMART SM00987 56 216 9.4E-41 T 16-09-2016 BER92_RS00215 d1bdb1808643e986b0e7fb155e367b12 241 SMART SM00986 56 216 9.4E-41 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 SUPERFAMILY SSF51161 117 370 2.91E-70 T 16-09-2016 IPR011004 Trimeric LpxA-like BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 289 323 4.1E-10 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 246 280 6.9E-5 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 114 386 54.556 T 16-09-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 Gene3D G3DSA:2.160.10.10 203 368 3.6E-57 T 16-09-2016 BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 120 386 1.7E-128 T 16-09-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 PANTHER PTHR19136:SF52 127 388 1.2E-126 T 16-09-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 PANTHER PTHR19136 127 388 1.2E-126 T 16-09-2016 BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 117 183 1.8E-22 T 16-09-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 BER92_RS06485 ec228248c32610c78c81d3d6c6ce1700 389 Gene3D G3DSA:1.10.166.10 115 184 8.0E-28 T 16-09-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 Gene3D G3DSA:2.40.50.100 345 359 3.8E-8 T 16-09-2016 BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 Gene3D G3DSA:2.40.50.100 240 285 3.8E-8 T 16-09-2016 BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 SUPERFAMILY SSF52540 4 243 8.33E-82 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 PANTHER PTHR24220 5 312 8.4E-159 T 16-09-2016 BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 Gene3D G3DSA:2.40.50.140 286 343 3.3E-16 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 Pfam PF00005 ABC transporter 21 162 1.0E-29 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 SUPERFAMILY SSF50331 237 359 2.26E-28 T 16-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 Gene3D G3DSA:3.40.50.300 4 235 1.0E-72 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 Pfam PF08402 TOBE domain 282 351 2.4E-8 T 16-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 SMART SM00382 29 212 5.0E-12 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS11580 2941eeaecd8a0a94a2633ef79fd7d19c 362 PANTHER PTHR24220:SF151 5 312 8.4E-159 T 16-09-2016 BER92_RS18955 24f2cc6ad991e626aee5ff92337e4eeb 203 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 201 19.403 T 16-09-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 BER92_RS18955 24f2cc6ad991e626aee5ff92337e4eeb 203 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 7.1E-21 T 16-09-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 BER92_RS18955 24f2cc6ad991e626aee5ff92337e4eeb 203 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 7.1E-21 T 16-09-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 BER92_RS18955 24f2cc6ad991e626aee5ff92337e4eeb 203 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 7.1E-21 T 16-09-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 BER92_RS18955 24f2cc6ad991e626aee5ff92337e4eeb 203 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 79 1.5E-26 T 16-09-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 BER92_RS18955 24f2cc6ad991e626aee5ff92337e4eeb 203 PANTHER PTHR33162 2 167 2.0E-42 T 16-09-2016 BER92_RS18955 24f2cc6ad991e626aee5ff92337e4eeb 203 PANTHER PTHR33162:SF4 2 167 2.0E-42 T 16-09-2016 BER92_RS18955 24f2cc6ad991e626aee5ff92337e4eeb 203 Pfam PF02416 mttA/Hcf106 family 4 34 2.5E-5 T 16-09-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BER92_RS02055 e6cb695220ec81edaf9bc49fb4d52160 421 SUPERFAMILY SSF48452 256 383 2.4E-5 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS02055 e6cb695220ec81edaf9bc49fb4d52160 421 Pfam PF07219 HemY protein N-terminus 33 132 1.7E-17 T 16-09-2016 IPR010817 HemY, N-terminal UniPathway: UPA00252 BER92_RS02055 e6cb695220ec81edaf9bc49fb4d52160 421 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 6 379 4.8E-47 T 16-09-2016 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 UniPathway: UPA00252 BER92_RS02055 e6cb695220ec81edaf9bc49fb4d52160 421 Gene3D G3DSA:1.25.40.10 301 384 3.5E-7 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS03265 900cd89df57c38f479dbc12e67d97d9d 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 8 305 2.8E-121 T 16-09-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24|UniPathway: UPA00030 BER92_RS03265 900cd89df57c38f479dbc12e67d97d9d 306 PIRSF PIRSF026649 5 305 1.8E-89 T 16-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BER92_RS03265 900cd89df57c38f479dbc12e67d97d9d 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 10 296 7.7E-69 T 16-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BER92_RS03265 900cd89df57c38f479dbc12e67d97d9d 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 6 305 42.002 T 16-09-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24|UniPathway: UPA00030 BER92_RS03265 900cd89df57c38f479dbc12e67d97d9d 306 PANTHER PTHR30606 4 306 2.0E-149 T 16-09-2016 BER92_RS03265 900cd89df57c38f479dbc12e67d97d9d 306 PANTHER PTHR30606:SF5 4 306 2.0E-149 T 16-09-2016 BER92_RS19255 d87d069880e1abbd8800504055eb80b0 471 PANTHER PTHR11785:SF328 5 467 2.7E-131 T 16-09-2016 BER92_RS19255 d87d069880e1abbd8800504055eb80b0 471 PIRSF PIRSF006060 6 467 2.5E-85 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS19255 d87d069880e1abbd8800504055eb80b0 471 Pfam PF13520 Amino acid permease 26 447 1.1E-53 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS19255 d87d069880e1abbd8800504055eb80b0 471 PANTHER PTHR11785 5 467 2.7E-131 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 ProSitePatterns PS00819 Dps protein family signature 2. 90 104 - T 16-09-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 PANTHER PTHR30295 23 185 5.2E-71 T 16-09-2016 BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 Gene3D G3DSA:1.20.1260.10 25 185 1.1E-65 T 16-09-2016 IPR012347 Ferritin-related BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 64 80 4.2E-12 T 16-09-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 162 180 4.2E-12 T 16-09-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 88 104 4.2E-12 T 16-09-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 Pfam PF00210 Ferritin-like domain 46 185 1.3E-29 T 16-09-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 SUPERFAMILY SSF47240 31 185 2.89E-45 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 ProSitePatterns PS00818 Dps protein family signature 1. 64 80 - T 16-09-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 PANTHER PTHR30295:SF6 23 185 5.2E-71 T 16-09-2016 BER92_RS04090 5d610ad2ca2abd1c1b1b752a1e14435f 185 PIRSF PIRSF005900 23 185 7.4E-47 T 16-09-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 BER92_RS09225 984c05065cd06fd2df28b8241f3a4a48 244 Pfam PF00977 Histidine biosynthesis protein 5 236 2.5E-67 T 16-09-2016 IPR006062 Histidine biosynthesis GO:0000105 BER92_RS09225 984c05065cd06fd2df28b8241f3a4a48 244 Gene3D G3DSA:3.20.20.70 4 243 8.8E-68 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS09225 984c05065cd06fd2df28b8241f3a4a48 244 PANTHER PTHR21235:SF15 1 244 4.3E-86 T 16-09-2016 BER92_RS09225 984c05065cd06fd2df28b8241f3a4a48 244 PANTHER PTHR21235 1 244 4.3E-86 T 16-09-2016 BER92_RS09225 984c05065cd06fd2df28b8241f3a4a48 244 SUPERFAMILY SSF51366 3 243 1.88E-58 T 16-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 BER92_RS09225 984c05065cd06fd2df28b8241f3a4a48 244 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 5 241 3.6E-73 T 16-09-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 BER92_RS09225 984c05065cd06fd2df28b8241f3a4a48 244 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 4 244 31.188 T 16-09-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 BER92_RS13050 00f57a2c74f8812ceea4704d7cf36fed 315 SUPERFAMILY SSF103481 196 290 4.71E-8 T 16-09-2016 BER92_RS13050 00f57a2c74f8812ceea4704d7cf36fed 315 PANTHER PTHR22911:SF71 6 315 2.6E-173 T 16-09-2016 BER92_RS13050 00f57a2c74f8812ceea4704d7cf36fed 315 Pfam PF00892 EamA-like transporter family 148 289 2.0E-15 T 16-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 BER92_RS13050 00f57a2c74f8812ceea4704d7cf36fed 315 Pfam PF00892 EamA-like transporter family 16 138 1.1E-9 T 16-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 BER92_RS13050 00f57a2c74f8812ceea4704d7cf36fed 315 SUPERFAMILY SSF103481 45 139 3.14E-5 T 16-09-2016 BER92_RS13050 00f57a2c74f8812ceea4704d7cf36fed 315 PANTHER PTHR22911 6 315 2.6E-173 T 16-09-2016 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 57 - T 16-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 225 421 4.5E-69 T 16-09-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Gene3D G3DSA:1.10.730.10 667 815 1.5E-39 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PANTHER PTHR11946 248 273 0.0 T 16-09-2016 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PANTHER PTHR11946 293 589 0.0 T 16-09-2016 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 9 879 0.0 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 SUPERFAMILY SSF50677 230 433 7.85E-49 T 16-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 SUPERFAMILY SSF47323 683 879 3.18E-32 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 189 202 2.1E-45 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 505 523 2.1E-45 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 542 564 2.1E-45 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 157 173 2.1E-45 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 219 238 2.1E-45 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 575 585 2.1E-45 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 131 148 2.1E-45 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 175 4.3E-27 T 16-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 637 674 4.2E-6 T 16-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 435 590 4.8E-9 T 16-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 8 879 23.337 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 SUPERFAMILY SSF52374 6 230 8.55E-145 T 16-09-2016 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 SUPERFAMILY SSF52374 434 684 8.55E-145 T 16-09-2016 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Gene3D G3DSA:3.90.740.10 227 442 4.2E-53 T 16-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PANTHER PTHR11946 9 210 0.0 T 16-09-2016 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PANTHER PTHR11946 634 879 0.0 T 16-09-2016 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Pfam PF08264 Anticodon-binding domain of tRNA 718 839 1.7E-13 T 16-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PANTHER PTHR11946:SF7 248 273 0.0 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PANTHER PTHR11946:SF7 293 589 0.0 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PANTHER PTHR11946:SF7 9 210 0.0 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 PANTHER PTHR11946:SF7 634 879 0.0 T 16-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Gene3D G3DSA:3.40.50.620 637 666 3.3E-150 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Gene3D G3DSA:3.40.50.620 8 226 3.3E-150 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS12820 60d5a1e342a426b3abe88f2a68418d2e 880 Gene3D G3DSA:3.40.50.620 443 591 3.3E-150 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 Gene3D G3DSA:3.40.50.300 190 389 6.1E-49 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 PANTHER PTHR32039:SF7 1 500 2.3E-260 T 16-09-2016 IPR004482 Mg chelatase-related protein BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 394 2.9E-97 T 16-09-2016 IPR000523 Magnesium chelatase ChlI domain BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 8.3E-46 T 16-09-2016 BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 SUPERFAMILY SSF54211 9 169 5.69E-32 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 PANTHER PTHR32039 1 500 2.3E-260 T 16-09-2016 BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 402 494 1.8E-29 T 16-09-2016 IPR025158 Mg chelatase-related protein, C-terminal domain BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 494 1.2E-194 T 16-09-2016 IPR004482 Mg chelatase-related protein BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 Gene3D G3DSA:3.30.230.10 6 168 1.1E-26 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 1.4E-6 T 16-09-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 1.4E-6 T 16-09-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 1.4E-6 T 16-09-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 341 353 1.4E-6 T 16-09-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 SMART SM00382 210 392 5.6E-8 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS01580 6214e274d19b614bf189229e0d77fb72 506 SUPERFAMILY SSF52540 190 499 2.25E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11730 67a6adfbb50873a5de1712753ccdb378 194 SMART SM00479 10 183 1.0E-13 T 16-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III BER92_RS11730 67a6adfbb50873a5de1712753ccdb378 194 SUPERFAMILY SSF53098 5 181 5.92E-45 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11730 67a6adfbb50873a5de1712753ccdb378 194 Gene3D G3DSA:3.30.420.10 8 179 2.6E-67 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11730 67a6adfbb50873a5de1712753ccdb378 194 Hamap MF_00045 Oligoribonuclease [orn]. 6 184 40.677 T 16-09-2016 IPR022894 Oligoribonuclease GO:0016788 BER92_RS11730 67a6adfbb50873a5de1712753ccdb378 194 Pfam PF00929 Exonuclease 12 173 1.8E-25 T 16-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III BER92_RS11730 67a6adfbb50873a5de1712753ccdb378 194 PANTHER PTHR11046:SF1 1 181 2.4E-117 T 16-09-2016 BER92_RS11730 67a6adfbb50873a5de1712753ccdb378 194 PANTHER PTHR11046 1 181 2.4E-117 T 16-09-2016 BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 SUPERFAMILY SSF51604 112 354 9.43E-68 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 Pfam PF13378 Enolase C-terminal domain-like 144 354 2.8E-52 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 99 124 - T 16-09-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 Gene3D G3DSA:3.20.20.120 123 353 5.7E-77 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 13 124 5.2E-17 T 16-09-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 SMART SM00922 141 239 4.2E-26 T 16-09-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 SUPERFAMILY SSF54826 1 125 1.41E-30 T 16-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 PANTHER PTHR13794:SF55 1 354 2.3E-119 T 16-09-2016 BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 Gene3D G3DSA:3.30.390.10 1 122 4.2E-44 T 16-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BER92_RS18180 1c2d18ccc677c87154282b90780361af 365 PANTHER PTHR13794 1 354 2.3E-119 T 16-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 BER92_RS11940 69e52cef2092dc6350fd66e563a57356 162 SUPERFAMILY SSF50475 6 136 4.8E-23 T 16-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 BER92_RS11940 69e52cef2092dc6350fd66e563a57356 162 Gene3D G3DSA:2.30.110.10 5 155 2.0E-47 T 16-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 BER92_RS11940 69e52cef2092dc6350fd66e563a57356 162 PANTHER PTHR34818 1 162 1.6E-44 T 16-09-2016 BER92_RS11940 69e52cef2092dc6350fd66e563a57356 162 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 8 142 4.7E-30 T 16-09-2016 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 Gene3D G3DSA:3.30.565.10 244 406 7.2E-41 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 300 405 3.1E-19 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 SUPERFAMILY SSF55874 253 404 1.05E-41 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PANTHER PTHR24423:SF360 1 133 8.5E-133 T 16-09-2016 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PANTHER PTHR24423:SF360 220 408 8.5E-133 T 16-09-2016 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PANTHER PTHR24423:SF360 150 182 8.5E-133 T 16-09-2016 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 Pfam PF00512 His Kinase A (phospho-acceptor) domain 155 253 3.4E-7 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 Gene3D G3DSA:1.10.287.130 223 243 6.5E-5 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 Gene3D G3DSA:1.10.287.130 149 180 6.5E-5 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 SUPERFAMILY SSF47384 149 189 8.24E-6 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 SMART SM00387 297 406 3.8E-28 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 363 7.9E-19 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 349 7.9E-19 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 7.9E-19 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 7.9E-19 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PANTHER PTHR24423 1 133 8.5E-133 T 16-09-2016 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PANTHER PTHR24423 220 408 8.5E-133 T 16-09-2016 BER92_RS10220 50954d32cf8bb2e4bed236aa3efe12fc 408 PANTHER PTHR24423 150 182 8.5E-133 T 16-09-2016 BER92_RS05735 a3c5bebf921b6c7c06ab57f09ab9d7f9 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 73 8.6E-15 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS05735 a3c5bebf921b6c7c06ab57f09ab9d7f9 202 PANTHER PTHR30055 10 201 5.3E-59 T 16-09-2016 BER92_RS05735 a3c5bebf921b6c7c06ab57f09ab9d7f9 202 Gene3D G3DSA:1.10.357.10 25 202 2.0E-29 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS05735 a3c5bebf921b6c7c06ab57f09ab9d7f9 202 SUPERFAMILY SSF46689 19 79 1.9E-15 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS05735 a3c5bebf921b6c7c06ab57f09ab9d7f9 202 PANTHER PTHR30055:SF33 10 201 5.3E-59 T 16-09-2016 BER92_RS05735 a3c5bebf921b6c7c06ab57f09ab9d7f9 202 SUPERFAMILY SSF48498 94 189 4.71E-6 T 16-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal BER92_RS05735 a3c5bebf921b6c7c06ab57f09ab9d7f9 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 2.0E-8 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS05735 a3c5bebf921b6c7c06ab57f09ab9d7f9 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 2.0E-8 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 SUPERFAMILY SSF55594 1 88 1.31E-26 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 PANTHER PTHR33705:SF2 1 89 1.7E-41 T 16-09-2016 BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 16-09-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 3.7E-32 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 16-09-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 PANTHER PTHR33705 1 89 1.7E-41 T 16-09-2016 BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.9E-26 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 Gene3D G3DSA:3.30.1340.10 1 87 2.2E-29 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.0E-16 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.0E-16 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS13700 b8e133f720c78e0dad0e3784bf7cea3d 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.0E-16 T 16-09-2016 IPR000032 Phosphocarrier HPr protein-like BER92_RS13900 589dbd3716583a17a902018fcd179f32 268 PANTHER PTHR30007 7 258 1.6E-132 T 16-09-2016 BER92_RS13900 589dbd3716583a17a902018fcd179f32 268 Pfam PF01609 Transposase DDE domain 107 251 2.7E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS13900 589dbd3716583a17a902018fcd179f32 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS13900 589dbd3716583a17a902018fcd179f32 268 PANTHER PTHR30007:SF17 7 258 1.6E-132 T 16-09-2016 BER92_RS12355 589dbd3716583a17a902018fcd179f32 268 PANTHER PTHR30007 7 258 1.6E-132 T 16-09-2016 BER92_RS12355 589dbd3716583a17a902018fcd179f32 268 Pfam PF01609 Transposase DDE domain 107 251 2.7E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS12355 589dbd3716583a17a902018fcd179f32 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS12355 589dbd3716583a17a902018fcd179f32 268 PANTHER PTHR30007:SF17 7 258 1.6E-132 T 16-09-2016 BER92_RS11440 589dbd3716583a17a902018fcd179f32 268 PANTHER PTHR30007 7 258 1.6E-132 T 16-09-2016 BER92_RS11440 589dbd3716583a17a902018fcd179f32 268 Pfam PF01609 Transposase DDE domain 107 251 2.7E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11440 589dbd3716583a17a902018fcd179f32 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS11440 589dbd3716583a17a902018fcd179f32 268 PANTHER PTHR30007:SF17 7 258 1.6E-132 T 16-09-2016 BER92_RS09960 589dbd3716583a17a902018fcd179f32 268 PANTHER PTHR30007 7 258 1.6E-132 T 16-09-2016 BER92_RS09960 589dbd3716583a17a902018fcd179f32 268 Pfam PF01609 Transposase DDE domain 107 251 2.7E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09960 589dbd3716583a17a902018fcd179f32 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS09960 589dbd3716583a17a902018fcd179f32 268 PANTHER PTHR30007:SF17 7 258 1.6E-132 T 16-09-2016 BER92_RS04735 f225192c4e755e5317d9a1a25a5c6c49 262 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 9 258 3.0E-82 T 16-09-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 BER92_RS04735 f225192c4e755e5317d9a1a25a5c6c49 262 SUPERFAMILY SSF53335 15 259 5.07E-73 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS04735 f225192c4e755e5317d9a1a25a5c6c49 262 Gene3D G3DSA:1.10.8.100 199 259 2.8E-22 T 16-09-2016 IPR023165 rRNA adenine dimethylase-like BER92_RS04735 f225192c4e755e5317d9a1a25a5c6c49 262 Gene3D G3DSA:3.40.50.150 9 195 6.9E-67 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS04735 f225192c4e755e5317d9a1a25a5c6c49 262 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 39 66 - T 16-09-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 BER92_RS04735 f225192c4e755e5317d9a1a25a5c6c49 262 PANTHER PTHR11727 5 259 2.8E-92 T 16-09-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm BER92_RS04735 f225192c4e755e5317d9a1a25a5c6c49 262 SMART SM00650 23 194 4.0E-80 T 16-09-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 BER92_RS04735 f225192c4e755e5317d9a1a25a5c6c49 262 Pfam PF00398 Ribosomal RNA adenine dimethylase 9 258 7.7E-63 T 16-09-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm BER92_RS04735 f225192c4e755e5317d9a1a25a5c6c49 262 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 7 261 54.568 T 16-09-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 BER92_RS06785 af4071d4f5c129ba710881010684f9ab 321 Pfam PF01545 Cation efflux family 19 209 1.9E-46 T 16-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BER92_RS06785 af4071d4f5c129ba710881010684f9ab 321 Gene3D G3DSA:1.20.1510.10 16 209 3.5E-60 T 16-09-2016 IPR027469 Cation efflux protein transmembrane domain BER92_RS06785 af4071d4f5c129ba710881010684f9ab 321 PANTHER PTHR11562 3 295 1.8E-104 T 16-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BER92_RS06785 af4071d4f5c129ba710881010684f9ab 321 PANTHER PTHR11562:SF17 3 295 1.8E-104 T 16-09-2016 BER92_RS06785 af4071d4f5c129ba710881010684f9ab 321 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 16 288 4.3E-86 T 16-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BER92_RS06785 af4071d4f5c129ba710881010684f9ab 321 SUPERFAMILY SSF160240 215 287 5.23E-10 T 16-09-2016 BER92_RS06785 af4071d4f5c129ba710881010684f9ab 321 SUPERFAMILY SSF161111 16 210 5.36E-56 T 16-09-2016 BER92_RS09595 54754f52d977c171070543a7bf051612 369 Pfam PF02486 Replication initiation factor 167 325 6.2E-25 T 16-09-2016 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 SUPERFAMILY SSF47928 3 103 1.12E-18 T 16-09-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 173 3.1E-44 T 16-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.4E-21 T 16-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 PRINTS PR00125 ATP synthase delta subunit signature 72 83 1.4E-21 T 16-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 PRINTS PR00125 ATP synthase delta subunit signature 83 97 1.4E-21 T 16-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 PRINTS PR00125 ATP synthase delta subunit signature 133 148 1.4E-21 T 16-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 PRINTS PR00125 ATP synthase delta subunit signature 148 166 1.4E-21 T 16-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 173 2.0E-33 T 16-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 175 17.928 T 16-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 Gene3D G3DSA:1.10.520.20 3 103 2.3E-21 T 16-09-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain BER92_RS15910 f31c374c03e00f1b199071c2a5a5b0f9 175 PANTHER PTHR11910 8 174 7.1E-42 T 16-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 BER92_RS13665 e06184551ddb18495ffc2eb603701d81 239 SMART SM00382 26 214 4.7E-7 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS13665 e06184551ddb18495ffc2eb603701d81 239 Pfam PF00005 ABC transporter 18 164 1.7E-33 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS13665 e06184551ddb18495ffc2eb603701d81 239 PANTHER PTHR24220 3 235 2.4E-138 T 16-09-2016 BER92_RS13665 e06184551ddb18495ffc2eb603701d81 239 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 213 234 3.4E-6 T 16-09-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal BER92_RS13665 e06184551ddb18495ffc2eb603701d81 239 Gene3D G3DSA:3.40.50.300 2 232 5.3E-69 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13665 e06184551ddb18495ffc2eb603701d81 239 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 2 239 5.3E-115 T 16-09-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 BER92_RS13665 e06184551ddb18495ffc2eb603701d81 239 SUPERFAMILY SSF52540 2 235 3.43E-64 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13665 e06184551ddb18495ffc2eb603701d81 239 PANTHER PTHR24220:SF497 3 235 2.4E-138 T 16-09-2016 BER92_RS03645 8681df60dd1367a5ce118dee7132df9e 221 PIRSF PIRSF016482 1 218 1.5E-86 T 16-09-2016 IPR007445 Pilus assembly protein, PilO BER92_RS03645 8681df60dd1367a5ce118dee7132df9e 221 PANTHER PTHR39555:SF1 2 213 1.7E-63 T 16-09-2016 BER92_RS03645 8681df60dd1367a5ce118dee7132df9e 221 PANTHER PTHR39555 2 213 1.7E-63 T 16-09-2016 BER92_RS03645 8681df60dd1367a5ce118dee7132df9e 221 Pfam PF04350 Pilus assembly protein, PilO 51 201 6.3E-50 T 16-09-2016 IPR007445 Pilus assembly protein, PilO BER92_RS03645 8681df60dd1367a5ce118dee7132df9e 221 Gene3D G3DSA:3.30.70.60 96 210 4.0E-34 T 16-09-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BER92_RS03645 8681df60dd1367a5ce118dee7132df9e 221 Gene3D G3DSA:1.10.287.540 59 95 1.7E-9 T 16-09-2016 IPR023218 UPF0291 structural domain BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 PANTHER PTHR23429:SF0 1 505 1.1E-274 T 16-09-2016 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 195 201 - T 16-09-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 Gene3D G3DSA:3.30.360.10 205 497 1.6E-113 T 16-09-2016 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 207 501 1.7E-107 T 16-09-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 SUPERFAMILY SSF55347 195 500 7.19E-110 T 16-09-2016 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 SUPERFAMILY SSF51735 5 208 2.17E-54 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 503 77.687 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 PANTHER PTHR23429 1 505 1.1E-274 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 205 1.9E-54 T 16-09-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 Gene3D G3DSA:3.40.50.720 8 204 1.1E-59 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 502 2.8E-176 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 342 368 6.4E-47 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 255 271 6.4E-47 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 185 213 6.4E-47 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 237 254 6.4E-47 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS01775 f02aa5b6253bf03ca4e808c69e19b256 608 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 161 174 6.4E-47 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS09240 ec9a5a771114a98bd29fce9b688cdeac 528 Pfam PF16371 N terminal of Calcineurin-like phosphoesterase 41 102 4.9E-10 T 16-09-2016 IPR032285 Calcineurin-like phosphoesterase, N-terminal BER92_RS09240 ec9a5a771114a98bd29fce9b688cdeac 528 Pfam PF00149 Calcineurin-like phosphoesterase 176 328 1.3E-6 T 16-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 BER92_RS09240 ec9a5a771114a98bd29fce9b688cdeac 528 SUPERFAMILY SSF56300 137 398 6.65E-31 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS09240 ec9a5a771114a98bd29fce9b688cdeac 528 Pfam PF16370 C terminal of Calcineurin-like phosphoesterase 348 513 1.0E-37 T 16-09-2016 IPR032288 Calcineurin-like phosphoesterase, C-terminal BER92_RS09240 ec9a5a771114a98bd29fce9b688cdeac 528 Gene3D G3DSA:3.60.21.10 135 397 1.1E-25 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS14540 66a970df025b56953b3f5db8c38cad04 799 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 43 - T 16-09-2016 IPR010916 TonB box, conserved site BER92_RS14540 66a970df025b56953b3f5db8c38cad04 799 SUPERFAMILY SSF56935 36 799 2.49E-98 T 16-09-2016 BER92_RS14540 66a970df025b56953b3f5db8c38cad04 799 PANTHER PTHR30069:SF4 9 714 1.2E-97 T 16-09-2016 BER92_RS14540 66a970df025b56953b3f5db8c38cad04 799 PANTHER PTHR30069 9 714 1.2E-97 T 16-09-2016 BER92_RS14540 66a970df025b56953b3f5db8c38cad04 799 Gene3D G3DSA:2.170.130.10 50 173 1.3E-32 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS14540 66a970df025b56953b3f5db8c38cad04 799 Pfam PF00593 TonB dependent receptor 505 798 9.3E-22 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS14540 66a970df025b56953b3f5db8c38cad04 799 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 171 6.0E-23 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS14540 66a970df025b56953b3f5db8c38cad04 799 Gene3D G3DSA:2.40.170.20 174 799 1.6E-78 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS08445 f1660e1decd94ca9cc7505c0bed12494 145 Gene3D G3DSA:3.30.70.60 2 104 2.4E-37 T 16-09-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BER92_RS08445 f1660e1decd94ca9cc7505c0bed12494 145 Pfam PF01250 Ribosomal protein S6 4 92 3.7E-26 T 16-09-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS08445 f1660e1decd94ca9cc7505c0bed12494 145 SUPERFAMILY SSF54995 1 104 2.75E-34 T 16-09-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS08445 f1660e1decd94ca9cc7505c0bed12494 145 TIGRFAM TIGR00166 S6: ribosomal protein bS6 3 94 1.3E-31 T 16-09-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS08445 f1660e1decd94ca9cc7505c0bed12494 145 PANTHER PTHR21011:SF1 3 135 1.5E-40 T 16-09-2016 BER92_RS08445 f1660e1decd94ca9cc7505c0bed12494 145 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 2 95 21.12 T 16-09-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS08445 f1660e1decd94ca9cc7505c0bed12494 145 PANTHER PTHR21011 3 135 1.5E-40 T 16-09-2016 BER92_RS01100 7fe88422ed109dd69145a43938012e15 194 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 189 24.299 T 16-09-2016 IPR022929 Putative manganese efflux pump MntP BER92_RS01100 7fe88422ed109dd69145a43938012e15 194 Pfam PF02659 Putative manganese efflux pump 31 186 1.3E-48 T 16-09-2016 IPR003810 Putative manganese efflux pump BER92_RS01100 7fe88422ed109dd69145a43938012e15 194 PANTHER PTHR35529 2 193 1.6E-70 T 16-09-2016 BER92_RS13490 d870598f4de25a42a81475c7be0901c2 152 Pfam PF02082 Transcriptional regulator 3 82 1.8E-22 T 16-09-2016 IPR000944 Transcription regulator Rrf2-type BER92_RS13490 d870598f4de25a42a81475c7be0901c2 152 TIGRFAM TIGR02944 suf_reg_Xantho: FeS assembly SUF system regulator 1 130 4.1E-60 T 16-09-2016 IPR014290 SUF system FeS cluster assembly regulator BER92_RS13490 d870598f4de25a42a81475c7be0901c2 152 PANTHER PTHR33221:SF2 3 134 1.5E-53 T 16-09-2016 BER92_RS13490 d870598f4de25a42a81475c7be0901c2 152 PANTHER PTHR33221 3 134 1.5E-53 T 16-09-2016 BER92_RS13490 d870598f4de25a42a81475c7be0901c2 152 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 3 131 1.5E-30 T 16-09-2016 IPR000944 Transcription regulator Rrf2-type BER92_RS13490 d870598f4de25a42a81475c7be0901c2 152 SUPERFAMILY SSF46785 3 133 5.86E-33 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS13490 d870598f4de25a42a81475c7be0901c2 152 Gene3D G3DSA:1.10.10.10 3 134 1.7E-37 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS13225 3702b84006101d258eff23804f39b84a 302 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 288 39.584 T 16-09-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 BER92_RS13225 3702b84006101d258eff23804f39b84a 302 PANTHER PTHR37426:SF1 109 301 3.5E-149 T 16-09-2016 BER92_RS13225 3702b84006101d258eff23804f39b84a 302 PANTHER PTHR37426:SF1 1 91 3.5E-149 T 16-09-2016 BER92_RS13225 3702b84006101d258eff23804f39b84a 302 PANTHER PTHR37426 109 301 3.5E-149 T 16-09-2016 BER92_RS13225 3702b84006101d258eff23804f39b84a 302 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 298 1.1E-93 T 16-09-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 BER92_RS13225 3702b84006101d258eff23804f39b84a 302 PANTHER PTHR37426 1 91 3.5E-149 T 16-09-2016 BER92_RS13225 3702b84006101d258eff23804f39b84a 302 Gene3D G3DSA:3.40.50.150 1 300 3.4E-100 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS13225 3702b84006101d258eff23804f39b84a 302 SUPERFAMILY SSF53335 8 298 5.98E-79 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 Pfam PF00107 Zinc-binding dehydrogenase 176 303 4.1E-26 T 16-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 Gene3D G3DSA:3.90.180.10 1 169 8.0E-56 T 16-09-2016 IPR011032 GroES-like BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 PANTHER PTHR11695 13 346 5.4E-131 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 SUPERFAMILY SSF50129 1 167 3.42E-48 T 16-09-2016 IPR011032 GroES-like BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 SMART SM00829 8 343 2.1E-8 T 16-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 Gene3D G3DSA:3.40.50.720 170 290 1.6E-36 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 127 5.9E-30 T 16-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 SUPERFAMILY SSF51735 138 313 2.77E-42 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 16-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 BER92_RS02455 9500bc7f8afe2a3aa6c65aac539d275c 346 PANTHER PTHR11695:SF526 13 346 5.4E-131 T 16-09-2016 BER92_RS19025 3c018db184dcce507bc9c57cc1a987ee 284 SUPERFAMILY SSF53098 112 278 2.78E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS19025 3c018db184dcce507bc9c57cc1a987ee 284 Pfam PF00665 Integrase core domain 119 233 9.9E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS19025 3c018db184dcce507bc9c57cc1a987ee 284 PANTHER PTHR32552 12 282 2.4E-87 T 16-09-2016 BER92_RS19025 3c018db184dcce507bc9c57cc1a987ee 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS19025 3c018db184dcce507bc9c57cc1a987ee 284 Gene3D G3DSA:3.30.420.10 113 272 2.0E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS16865 3c018db184dcce507bc9c57cc1a987ee 284 SUPERFAMILY SSF53098 112 278 2.78E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS16865 3c018db184dcce507bc9c57cc1a987ee 284 Pfam PF00665 Integrase core domain 119 233 9.9E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS16865 3c018db184dcce507bc9c57cc1a987ee 284 PANTHER PTHR32552 12 282 2.4E-87 T 16-09-2016 BER92_RS16865 3c018db184dcce507bc9c57cc1a987ee 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS16865 3c018db184dcce507bc9c57cc1a987ee 284 Gene3D G3DSA:3.30.420.10 113 272 2.0E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11815 3c018db184dcce507bc9c57cc1a987ee 284 SUPERFAMILY SSF53098 112 278 2.78E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11815 3c018db184dcce507bc9c57cc1a987ee 284 Pfam PF00665 Integrase core domain 119 233 9.9E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS11815 3c018db184dcce507bc9c57cc1a987ee 284 PANTHER PTHR32552 12 282 2.4E-87 T 16-09-2016 BER92_RS11815 3c018db184dcce507bc9c57cc1a987ee 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS11815 3c018db184dcce507bc9c57cc1a987ee 284 Gene3D G3DSA:3.30.420.10 113 272 2.0E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS05430 3c018db184dcce507bc9c57cc1a987ee 284 SUPERFAMILY SSF53098 112 278 2.78E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS05430 3c018db184dcce507bc9c57cc1a987ee 284 Pfam PF00665 Integrase core domain 119 233 9.9E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS05430 3c018db184dcce507bc9c57cc1a987ee 284 PANTHER PTHR32552 12 282 2.4E-87 T 16-09-2016 BER92_RS05430 3c018db184dcce507bc9c57cc1a987ee 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS05430 3c018db184dcce507bc9c57cc1a987ee 284 Gene3D G3DSA:3.30.420.10 113 272 2.0E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS18285 8007305cbb74442e231de153964fc38a 291 PANTHER PTHR11403:SF0 136 291 4.5E-129 T 16-09-2016 BER92_RS18285 8007305cbb74442e231de153964fc38a 291 PANTHER PTHR11403:SF0 2 118 4.5E-129 T 16-09-2016 BER92_RS18285 8007305cbb74442e231de153964fc38a 291 SUPERFAMILY SSF81452 8 291 8.79E-84 T 16-09-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 BER92_RS18285 8007305cbb74442e231de153964fc38a 291 Gene3D G3DSA:1.10.287.70 7 74 5.1E-21 T 16-09-2016 BER92_RS18285 8007305cbb74442e231de153964fc38a 291 Gene3D G3DSA:1.20.120.80 77 290 3.6E-67 T 16-09-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 BER92_RS18285 8007305cbb74442e231de153964fc38a 291 PANTHER PTHR11403 136 291 4.5E-129 T 16-09-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 BER92_RS18285 8007305cbb74442e231de153964fc38a 291 PANTHER PTHR11403 2 118 4.5E-129 T 16-09-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 BER92_RS18285 8007305cbb74442e231de153964fc38a 291 Pfam PF00510 Cytochrome c oxidase subunit III 10 112 1.1E-15 T 16-09-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 BER92_RS18285 8007305cbb74442e231de153964fc38a 291 Pfam PF00510 Cytochrome c oxidase subunit III 150 290 1.5E-45 T 16-09-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 BER92_RS07390 3d4dd6793ac2e2e9cf9268c8535a4d2d 106 Pfam PF00462 Glutaredoxin 16 81 9.1E-17 T 16-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BER92_RS07390 3d4dd6793ac2e2e9cf9268c8535a4d2d 106 PANTHER PTHR10293 5 103 1.0E-47 T 16-09-2016 IPR004480 Monothiol glutaredoxin-related BER92_RS07390 3d4dd6793ac2e2e9cf9268c8535a4d2d 106 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 101 9.9E-41 T 16-09-2016 IPR004480 Monothiol glutaredoxin-related BER92_RS07390 3d4dd6793ac2e2e9cf9268c8535a4d2d 106 PIRSF PIRSF005894 1 106 1.7E-45 T 16-09-2016 IPR014434 Monothiol glutaredoxin BER92_RS07390 3d4dd6793ac2e2e9cf9268c8535a4d2d 106 SUPERFAMILY SSF52833 3 102 1.52E-29 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS07390 3d4dd6793ac2e2e9cf9268c8535a4d2d 106 Gene3D G3DSA:3.40.30.10 7 102 1.2E-30 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 SUPERFAMILY SSF56322 6 449 1.03E-123 T 16-09-2016 IPR005801 ADC synthase GO:0009058 BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 Pfam PF00425 chorismate binding enzyme 187 440 2.8E-92 T 16-09-2016 IPR015890 Chorismate-utilising enzyme, C-terminal BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 PRINTS PR00095 Anthranilate synthase component I signature 382 396 3.1E-18 T 16-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 PRINTS PR00095 Anthranilate synthase component I signature 288 301 3.1E-18 T 16-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 PRINTS PR00095 Anthranilate synthase component I signature 397 411 3.1E-18 T 16-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 PRINTS PR00095 Anthranilate synthase component I signature 302 315 3.1E-18 T 16-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 Gene3D G3DSA:3.60.120.10 21 449 7.6E-133 T 16-09-2016 IPR005801 ADC synthase GO:0009058 BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 Pfam PF04715 Anthranilate synthase component I, N terminal region 17 143 1.6E-6 T 16-09-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 PANTHER PTHR11236:SF23 26 450 3.6E-120 T 16-09-2016 BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 TIGRFAM TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I 96 443 1.0E-140 T 16-09-2016 IPR010118 Para-aminobenzoate synthase/anthranilate synthase, component I BER92_RS13990 a28b14f4963a9257b27c3dd8627dc354 451 PANTHER PTHR11236 26 450 3.6E-120 T 16-09-2016 BER92_RS15985 68efbecad7b1d92b3da63447deae8666 161 PANTHER PTHR30476:SF0 1 161 7.0E-91 T 16-09-2016 BER92_RS15985 68efbecad7b1d92b3da63447deae8666 161 SUPERFAMILY SSF89963 2 85 1.67E-28 T 16-09-2016 IPR007551 Protein of unknown function DUF520 BER92_RS15985 68efbecad7b1d92b3da63447deae8666 161 PANTHER PTHR30476 1 161 7.0E-91 T 16-09-2016 BER92_RS15985 68efbecad7b1d92b3da63447deae8666 161 Pfam PF04461 Protein of unknown function (DUF520) 2 160 3.8E-61 T 16-09-2016 IPR007551 Protein of unknown function DUF520 BER92_RS15985 68efbecad7b1d92b3da63447deae8666 161 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 161 28.666 T 16-09-2016 IPR007551 Protein of unknown function DUF520 BER92_RS15985 68efbecad7b1d92b3da63447deae8666 161 Gene3D G3DSA:3.30.70.860 95 161 6.4E-31 T 16-09-2016 BER92_RS15985 68efbecad7b1d92b3da63447deae8666 161 SUPERFAMILY SSF89963 90 161 2.07E-26 T 16-09-2016 IPR007551 Protein of unknown function DUF520 BER92_RS15985 68efbecad7b1d92b3da63447deae8666 161 Gene3D G3DSA:3.30.70.990 9 94 1.9E-30 T 16-09-2016 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 Pfam PF00263 Bacterial type II and III secretion system protein 447 604 2.7E-41 T 16-09-2016 IPR004846 Type II/III secretion system GO:0009306 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 369 389 1.1E-25 T 16-09-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 199 216 1.1E-25 T 16-09-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 583 602 1.1E-25 T 16-09-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 460 479 1.1E-25 T 16-09-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 494 509 1.1E-25 T 16-09-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 PANTHER PTHR30332 1 606 0.0 T 16-09-2016 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 321 605 2.5E-109 T 16-09-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 PANTHER PTHR30332:SF5 1 606 0.0 T 16-09-2016 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 550 583 - T 16-09-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BER92_RS12865 0d56ad42065a712cf83b095add09106b 606 Pfam PF03958 Bacterial type II/III secretion system short domain 187 366 4.9E-19 T 16-09-2016 IPR005644 NolW-like BER92_RS12395 f9d53a940ae70d193ec05043e716a24c 283 ProSitePatterns PS01215 Mrp family signature. 128 144 - T 16-09-2016 IPR000808 Mrp, conserved site GO:0005524 BER92_RS12395 f9d53a940ae70d193ec05043e716a24c 283 PANTHER PTHR23264 20 271 1.1E-145 T 16-09-2016 IPR019591 Mrp/NBP35 ATP-binding protein BER92_RS12395 f9d53a940ae70d193ec05043e716a24c 283 SUPERFAMILY SSF52540 24 268 8.84E-61 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12395 f9d53a940ae70d193ec05043e716a24c 283 Gene3D G3DSA:3.40.50.300 19 262 1.4E-103 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12395 f9d53a940ae70d193ec05043e716a24c 283 PANTHER PTHR23264:SF19 20 271 1.1E-145 T 16-09-2016 BER92_RS12395 f9d53a940ae70d193ec05043e716a24c 283 Hamap MF_02040 Iron-sulfur cluster carrier protein. 10 269 37.76 T 16-09-2016 IPR019591 Mrp/NBP35 ATP-binding protein BER92_RS12395 f9d53a940ae70d193ec05043e716a24c 283 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 22 262 3.8E-102 T 16-09-2016 IPR019591 Mrp/NBP35 ATP-binding protein BER92_RS13035 b879406af8556e1f4a52e55e9d7f76c5 421 PANTHER PTHR32468:SF0 10 406 1.9E-145 T 16-09-2016 BER92_RS13035 b879406af8556e1f4a52e55e9d7f76c5 421 PANTHER PTHR32468 10 406 1.9E-145 T 16-09-2016 BER92_RS13035 b879406af8556e1f4a52e55e9d7f76c5 421 Pfam PF00999 Sodium/hydrogen exchanger family 17 406 1.0E-55 T 16-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BER92_RS02685 cdae4d29e402f9e35f74434a6db9d4b2 183 Gene3D G3DSA:3.60.20.10 13 183 9.1E-78 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS02685 cdae4d29e402f9e35f74434a6db9d4b2 183 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 13 183 6.4E-81 T 16-09-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BER92_RS02685 cdae4d29e402f9e35f74434a6db9d4b2 183 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 12 183 40.624 T 16-09-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BER92_RS02685 cdae4d29e402f9e35f74434a6db9d4b2 183 PIRSF PIRSF039093 6 183 4.5E-81 T 16-09-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BER92_RS02685 cdae4d29e402f9e35f74434a6db9d4b2 183 SUPERFAMILY SSF56235 9 182 9.16E-53 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS02685 cdae4d29e402f9e35f74434a6db9d4b2 183 Pfam PF00227 Proteasome subunit 10 181 8.8E-20 T 16-09-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 BER92_RS02685 cdae4d29e402f9e35f74434a6db9d4b2 183 PANTHER PTHR32194 4 183 4.6E-119 T 16-09-2016 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 PRINTS PR00207 Flagellin signature 76 95 2.3E-23 T 16-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 PRINTS PR00207 Flagellin signature 111 134 2.3E-23 T 16-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 PRINTS PR00207 Flagellin signature 37 54 2.3E-23 T 16-09-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 Pfam PF07196 Flagellin hook IN motif 198 258 5.6E-5 T 16-09-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 Pfam PF00700 Bacterial flagellin C-terminal helical region 313 398 3.4E-27 T 16-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 SUPERFAMILY SSF64518 1 399 6.67E-97 T 16-09-2016 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 PANTHER PTHR30244:SF1 230 399 1.1E-128 T 16-09-2016 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 PANTHER PTHR30244:SF1 2 177 1.1E-128 T 16-09-2016 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 Gene3D G3DSA:1.20.1330.10 301 355 1.1E-59 T 16-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 Gene3D G3DSA:1.20.1330.10 54 172 1.1E-59 T 16-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.4E-39 T 16-09-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 PANTHER PTHR30244 230 399 1.1E-128 T 16-09-2016 BER92_RS10300 818562bbdd33f5fa919b3ae736218737 399 PANTHER PTHR30244 2 177 1.1E-128 T 16-09-2016 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Gene3D G3DSA:3.40.50.20 540 663 2.7E-60 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Pfam PF02142 MGS-like domain 963 1048 6.5E-19 T 16-09-2016 IPR011607 Methylglyoxal synthase-like domain BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 SUPERFAMILY SSF56059 128 401 1.26E-107 T 16-09-2016 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 PANTHER PTHR11405 1 1075 0.0 T 16-09-2016 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 845 852 - T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 PANTHER PTHR11405:SF5 1 1075 0.0 T 16-09-2016 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1074 13.496 T 16-09-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1059 0.0 T 16-09-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 882 7.6E-37 T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 3.1E-70 T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 SUPERFAMILY SSF52335 942 1077 9.03E-39 T 16-09-2016 IPR011607 Methylglyoxal synthase-like domain BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 SUPERFAMILY SSF48108 396 555 2.62E-51 T 16-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 428 548 6.8E-41 T 16-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Gene3D G3DSA:1.10.1030.10 400 539 2.6E-50 T 16-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Gene3D G3DSA:3.30.470.20 201 399 1.5E-75 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Gene3D G3DSA:3.30.470.20 746 940 4.5E-76 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 SUPERFAMILY SSF56059 674 939 6.19E-102 T 16-09-2016 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1068 13.271 T 16-09-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 SMART SM01096 425 548 6.9E-74 T 16-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.2E-66 T 16-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.2E-66 T 16-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.2E-66 T 16-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.2E-66 T 16-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.2E-66 T 16-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.2E-66 T 16-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.2E-66 T 16-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 SUPERFAMILY SSF52440 558 676 2.59E-49 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Gene3D G3DSA:3.40.50.20 4 108 2.5E-44 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Gene3D G3DSA:3.30.1490.20 141 200 1.1E-23 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Gene3D G3DSA:3.30.1490.20 687 745 4.5E-26 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 Gene3D G3DSA:3.40.50.1380 945 1078 2.4E-41 T 16-09-2016 IPR011607 Methylglyoxal synthase-like domain BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 SUPERFAMILY SSF52440 1 127 1.09E-49 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS09375 c4062cddef029cc1675e3180c2b2a3c1 1080 SMART SM00851 962 1048 1.3E-31 T 16-09-2016 IPR011607 Methylglyoxal synthase-like domain BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 PANTHER PTHR24220:SF123 4 317 1.3E-140 T 16-09-2016 BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 Gene3D G3DSA:3.40.50.300 3 239 9.8E-78 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 SUPERFAMILY SSF52540 3 243 8.31E-84 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 6.1E-112 T 16-09-2016 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 SMART SM00382 27 214 1.2E-17 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 SUPERFAMILY SSF50331 240 337 8.5E-9 T 16-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 PANTHER PTHR24220 4 317 1.3E-140 T 16-09-2016 BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 Pfam PF00005 ABC transporter 18 164 3.3E-33 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 Pfam PF12857 TOBE-like domain 282 336 2.4E-8 T 16-09-2016 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 BER92_RS02275 ef59925457afcc77bf673fc13acfec0b 343 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS00730 361de71b340b1509b911ea48b3edb977 667 PANTHER PTHR32305 69 285 2.4E-22 T 16-09-2016 BER92_RS00730 361de71b340b1509b911ea48b3edb977 667 SUPERFAMILY SSF69279 36 103 7.31E-14 T 16-09-2016 BER92_RS00730 361de71b340b1509b911ea48b3edb977 667 SUPERFAMILY SSF69279 147 163 7.31E-14 T 16-09-2016 BER92_RS00730 361de71b340b1509b911ea48b3edb977 667 SUPERFAMILY SSF69255 175 277 5.23E-23 T 16-09-2016 BER92_RS00730 361de71b340b1509b911ea48b3edb977 667 Gene3D G3DSA:2.40.50.230 182 277 3.0E-29 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS00730 361de71b340b1509b911ea48b3edb977 667 PANTHER PTHR32305:SF11 69 285 2.4E-22 T 16-09-2016 BER92_RS00730 361de71b340b1509b911ea48b3edb977 667 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 471 632 3.5E-34 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS00730 361de71b340b1509b911ea48b3edb977 667 Pfam PF05954 Phage late control gene D protein (GPD) 29 101 1.6E-10 T 16-09-2016 BER92_RS00730 361de71b340b1509b911ea48b3edb977 667 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 330 429 2.9E-27 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS14320 b7ab6827a90a9be4bb00f5ee50212be9 93 Gene3D G3DSA:3.40.50.300 1 81 4.0E-16 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14320 b7ab6827a90a9be4bb00f5ee50212be9 93 PANTHER PTHR32282:SF4 1 70 3.8E-27 T 16-09-2016 BER92_RS14320 b7ab6827a90a9be4bb00f5ee50212be9 93 PANTHER PTHR32282 1 70 3.8E-27 T 16-09-2016 BER92_RS14320 b7ab6827a90a9be4bb00f5ee50212be9 93 SUPERFAMILY SSF52540 1 82 7.81E-12 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 2 336 2.3E-138 T 16-09-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 2 340 51.849 T 16-09-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 PANTHER PTHR10366:SF32 3 276 6.0E-190 T 16-09-2016 BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 SUPERFAMILY SSF51735 2 336 1.01E-70 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 330 1.3E-130 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 Gene3D G3DSA:3.90.25.10 288 341 9.9E-46 T 16-09-2016 BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 Gene3D G3DSA:3.90.25.10 187 241 9.9E-46 T 16-09-2016 BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 PANTHER PTHR10366 294 340 6.0E-190 T 16-09-2016 BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 Gene3D G3DSA:3.40.50.720 1 184 1.6E-37 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 PANTHER PTHR10366 3 276 6.0E-190 T 16-09-2016 BER92_RS15655 3bfe968ff7da091896f92e02281c8a1c 344 PANTHER PTHR10366:SF32 294 340 6.0E-190 T 16-09-2016 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 SUPERFAMILY SSF53697 244 609 3.9E-108 T 16-09-2016 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 Gene3D G3DSA:3.40.50.10490 444 609 1.4E-63 T 16-09-2016 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 Pfam PF01380 SIS domain 290 416 7.1E-28 T 16-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 Pfam PF01380 SIS domain 464 591 1.3E-25 T 16-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 SUPERFAMILY SSF56235 2 233 2.66E-70 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 39.204 T 16-09-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 Gene3D G3DSA:3.60.20.10 2 233 2.4E-76 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 4.8E-259 T 16-09-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 PANTHER PTHR10937:SF0 1 609 0.0 T 16-09-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 Pfam PF13522 Glutamine amidotransferase domain 61 191 6.4E-22 T 16-09-2016 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 PANTHER PTHR10937 1 609 0.0 T 16-09-2016 BER92_RS15850 343511f07f49019fcb9d88abe9999ad8 609 Gene3D G3DSA:3.40.50.10490 243 443 3.2E-68 T 16-09-2016 BER92_RS01785 cda2e25338069ed890d822f0bbc6959f 275 Pfam PF00194 Eukaryotic-type carbonic anhydrase 51 269 9.6E-47 T 16-09-2016 IPR001148 Alpha carbonic anhydrase BER92_RS01785 cda2e25338069ed890d822f0bbc6959f 275 PANTHER PTHR18952:SF122 1 275 3.4E-140 T 16-09-2016 BER92_RS01785 cda2e25338069ed890d822f0bbc6959f 275 SUPERFAMILY SSF51069 50 271 5.59E-72 T 16-09-2016 IPR001148 Alpha carbonic anhydrase BER92_RS01785 cda2e25338069ed890d822f0bbc6959f 275 PANTHER PTHR18952 1 275 3.4E-140 T 16-09-2016 IPR023561 Carbonic anhydrase, alpha-class BER92_RS01785 cda2e25338069ed890d822f0bbc6959f 275 ProSitePatterns PS00162 Alpha-carbonic anhydrases signature. 141 157 - T 16-09-2016 IPR018338 Carbonic anhydrase, alpha-class, conserved site GO:0004089|GO:0006730|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS01785 cda2e25338069ed890d822f0bbc6959f 275 Gene3D G3DSA:3.10.200.10 50 271 5.1E-66 T 16-09-2016 IPR001148 Alpha carbonic anhydrase BER92_RS01785 cda2e25338069ed890d822f0bbc6959f 275 SMART SM01057 52 275 1.2E-94 T 16-09-2016 IPR001148 Alpha carbonic anhydrase BER92_RS08050 1097cf270967ec7ad5e48f0ee8ebe750 308 Gene3D G3DSA:3.40.630.30 8 125 5.8E-18 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS08050 1097cf270967ec7ad5e48f0ee8ebe750 308 Pfam PF00583 Acetyltransferase (GNAT) family 55 123 3.4E-9 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS08050 1097cf270967ec7ad5e48f0ee8ebe750 308 SUPERFAMILY SSF55729 7 129 1.59E-19 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS18005 b819d82344a68f139d03e63773c4664f 383 Gene3D G3DSA:3.40.640.10 31 252 3.9E-45 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS18005 b819d82344a68f139d03e63773c4664f 383 SUPERFAMILY SSF53383 5 361 6.33E-71 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS18005 b819d82344a68f139d03e63773c4664f 383 Gene3D G3DSA:3.90.1150.10 253 359 9.3E-18 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS18005 b819d82344a68f139d03e63773c4664f 383 PANTHER PTHR21152 4 351 4.9E-88 T 16-09-2016 BER92_RS18005 b819d82344a68f139d03e63773c4664f 383 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 369 127.183 T 16-09-2016 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 BER92_RS18005 b819d82344a68f139d03e63773c4664f 383 PIRSF PIRSF000524 1 377 5.1E-62 T 16-09-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 BER92_RS18005 b819d82344a68f139d03e63773c4664f 383 PANTHER PTHR21152:SF21 4 351 4.9E-88 T 16-09-2016 BER92_RS18005 b819d82344a68f139d03e63773c4664f 383 Pfam PF00266 Aminotransferase class-V 27 268 1.4E-23 T 16-09-2016 IPR000192 Aminotransferase class V domain BER92_RS14330 c52aeddaa4cc88f06f81cf4cc8d92b05 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14330 c52aeddaa4cc88f06f81cf4cc8d92b05 322 PANTHER PTHR35604 2 322 4.4E-242 T 16-09-2016 BER92_RS14330 c52aeddaa4cc88f06f81cf4cc8d92b05 322 PANTHER PTHR35604:SF2 2 322 4.4E-242 T 16-09-2016 BER92_RS14330 c52aeddaa4cc88f06f81cf4cc8d92b05 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS10855 c7a164c855627ccb0a8e4481dadb0675 136 PANTHER PTHR36445:SF1 47 136 6.5E-15 T 16-09-2016 BER92_RS10855 c7a164c855627ccb0a8e4481dadb0675 136 PANTHER PTHR36445 47 136 6.5E-15 T 16-09-2016 BER92_RS10855 c7a164c855627ccb0a8e4481dadb0675 136 Pfam PF02649 Type I GTP cyclohydrolase folE2 35 121 8.9E-16 T 16-09-2016 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 BER92_RS10855 c7a164c855627ccb0a8e4481dadb0675 136 Gene3D G3DSA:3.10.270.10 42 126 4.8E-18 T 16-09-2016 BER92_RS14825 e640d99f40eeb3666860400e4e33f467 170 TIGRFAM TIGR00077 lspA: signal peptidase II 9 162 4.7E-39 T 16-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 BER92_RS14825 e640d99f40eeb3666860400e4e33f467 170 PANTHER PTHR33695 1 170 2.7E-59 T 16-09-2016 BER92_RS14825 e640d99f40eeb3666860400e4e33f467 170 Pfam PF01252 Signal peptidase (SPase) II 17 157 6.8E-35 T 16-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 BER92_RS14825 e640d99f40eeb3666860400e4e33f467 170 ProSitePatterns PS00855 Signal peptidases II signature. 105 117 - T 16-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 BER92_RS14825 e640d99f40eeb3666860400e4e33f467 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 102 117 6.2E-16 T 16-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 BER92_RS14825 e640d99f40eeb3666860400e4e33f467 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 54 62 6.2E-16 T 16-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 BER92_RS14825 e640d99f40eeb3666860400e4e33f467 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 138 154 6.2E-16 T 16-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 BER92_RS14825 e640d99f40eeb3666860400e4e33f467 170 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 163 16.057 T 16-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 BER92_RS14825 e640d99f40eeb3666860400e4e33f467 170 PANTHER PTHR33695:SF1 1 170 2.7E-59 T 16-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 SUPERFAMILY SSF52096 10 199 1.03E-72 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 97 108 - T 16-09-2016 IPR018215 ClpP, Ser active site BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 PANTHER PTHR10381 10 206 1.9E-135 T 16-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 PANTHER PTHR10381:SF22 10 206 1.9E-135 T 16-09-2016 BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 Pfam PF00574 Clp protease 19 199 5.4E-87 T 16-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 119 132 - T 16-09-2016 IPR033135 ClpP, histidine active site BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 10 200 44.124 T 16-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 26 41 4.0E-52 T 16-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 175 194 4.0E-52 T 16-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 66 86 4.0E-52 T 16-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 97 114 4.0E-52 T 16-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 118 137 4.0E-52 T 16-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 Gene3D G3DSA:3.90.226.10 10 199 3.3E-88 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS14360 ac86f1e142199991f71f6052ec364f9b 208 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 9 199 6.0E-106 T 16-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 SUPERFAMILY SSF53328 88 283 2.62E-61 T 16-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 Gene3D G3DSA:3.30.70.260 3 82 2.1E-27 T 16-09-2016 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 6 282 2.4E-99 T 16-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 PANTHER PTHR10520:SF7 2 276 4.6E-151 T 16-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 Gene3D G3DSA:3.40.50.170 87 278 3.1E-56 T 16-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 2 282 47.85 T 16-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 PANTHER PTHR10520 2 276 4.6E-151 T 16-09-2016 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 PIRSF PIRSF036480 2 283 3.4E-110 T 16-09-2016 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 Pfam PF01842 ACT domain 5 56 2.3E-6 T 16-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 Pfam PF00551 Formyl transferase 88 264 1.1E-37 T 16-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 SUPERFAMILY SSF55021 3 86 9.99E-20 T 16-09-2016 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 7 33 4.7E-51 T 16-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 4.7E-51 T 16-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 4.7E-51 T 16-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 39 51 4.7E-51 T 16-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 4.7E-51 T 16-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 BER92_RS16485 a666d5b70301abe3a3ab4de4b7fd43cb 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 4.7E-51 T 16-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 725 0.0 T 16-09-2016 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 Gene3D G3DSA:3.40.50.300 557 647 3.7E-73 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 Gene3D G3DSA:3.40.50.300 287 388 3.7E-73 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 PANTHER PTHR11070 534 724 1.5E-241 T 16-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 PANTHER PTHR11070 6 518 1.5E-241 T 16-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 Pfam PF13361 UvrD-like helicase C-terminal domain 278 621 5.7E-73 T 16-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 Gene3D G3DSA:3.40.50.300 192 286 1.5E-63 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 Gene3D G3DSA:3.40.50.300 5 110 1.5E-63 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 SUPERFAMILY SSF52540 6 647 8.86E-176 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 PANTHER PTHR11070:SF7 6 518 1.5E-241 T 16-09-2016 BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 Gene3D G3DSA:1.10.10.160 114 191 4.7E-22 T 16-09-2016 IPR013986 DExx box DNA helicase domain BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 PANTHER PTHR11070:SF7 534 724 1.5E-241 T 16-09-2016 BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 272 2.6E-68 T 16-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 BER92_RS01230 89d6eac0ec24dfb95380e9f59dda5b44 728 Gene3D G3DSA:1.10.486.10 389 546 1.7E-45 T 16-09-2016 BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 PANTHER PTHR24031 11 531 1.0E-244 T 16-09-2016 BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 157 165 - T 16-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 PANTHER PTHR24031:SF261 11 531 1.0E-244 T 16-09-2016 BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 SMART SM00490 262 343 5.8E-33 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 Gene3D G3DSA:3.40.50.300 9 209 4.6E-79 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 SUPERFAMILY SSF52540 78 364 8.9E-76 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 4 592 47.289 T 16-09-2016 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 SMART SM00487 28 226 7.7E-64 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 Gene3D G3DSA:3.40.50.300 210 377 1.1E-53 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 Pfam PF00271 Helicase conserved C-terminal domain 235 343 8.5E-28 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 Pfam PF00270 DEAD/DEAH box helicase 34 197 3.4E-51 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS13075 8901018939f3c124eac052e0db9f8efb 640 Pfam PF03880 DbpA RNA binding domain 521 590 1.2E-22 T 16-09-2016 IPR005580 DbpA, RNA-binding domain BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 345 177.85 T 16-09-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 Gene3D G3DSA:3.40.50.300 20 175 2.5E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 SUPERFAMILY SSF46785 257 329 2.95E-25 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 PANTHER PTHR13779:SF25 1 335 2.0E-185 T 16-09-2016 BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 250 329 1.0E-36 T 16-09-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 4 235 1.7E-118 T 16-09-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 326 2.2E-145 T 16-09-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 253 326 3.9E-33 T 16-09-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 SMART SM00382 51 178 3.4E-12 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 Gene3D G3DSA:1.10.8.60 183 255 8.1E-33 T 16-09-2016 BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 Gene3D G3DSA:1.10.10.10 257 328 4.5E-34 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 SUPERFAMILY SSF52540 20 252 4.53E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14460 09cdee60e4ce02bef405eb076e8902fe 345 PANTHER PTHR13779 1 335 2.0E-185 T 16-09-2016 BER92_RS13940 afd36d5e77486106b3b12c70b401b7b0 298 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 10 294 1.5E-122 T 16-09-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747|UniPathway: UPA00946 BER92_RS13940 afd36d5e77486106b3b12c70b401b7b0 298 PANTHER PTHR21631:SF4 1 295 6.4E-151 T 16-09-2016 BER92_RS13940 afd36d5e77486106b3b12c70b401b7b0 298 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 7 295 47.979 T 16-09-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747|UniPathway: UPA00946 BER92_RS13940 afd36d5e77486106b3b12c70b401b7b0 298 Gene3D G3DSA:3.20.20.60 9 288 5.9E-96 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS13940 afd36d5e77486106b3b12c70b401b7b0 298 ProSitePatterns PS00161 Isocitrate lyase signature. 124 129 - T 16-09-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 BER92_RS13940 afd36d5e77486106b3b12c70b401b7b0 298 SUPERFAMILY SSF51621 8 293 2.65E-97 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS13940 afd36d5e77486106b3b12c70b401b7b0 298 Pfam PF13714 Phosphoenolpyruvate phosphomutase 14 257 1.0E-47 T 16-09-2016 BER92_RS13940 afd36d5e77486106b3b12c70b401b7b0 298 PANTHER PTHR21631 1 295 6.4E-151 T 16-09-2016 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 Pfam PF00158 Sigma-54 interaction domain 127 291 1.3E-59 T 16-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 Pfam PF02954 Bacterial regulatory protein, Fis family 384 421 2.3E-12 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 151 164 - T 16-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 PANTHER PTHR32071 1 422 3.8E-162 T 16-09-2016 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 SUPERFAMILY SSF46689 336 422 7.53E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 Pfam PF00072 Response regulator receiver domain 8 112 1.9E-15 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 407 426 4.4E-5 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 390 407 4.4E-5 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 Gene3D G3DSA:1.10.10.60 379 421 7.1E-14 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 Gene3D G3DSA:1.10.8.60 297 371 2.4E-12 T 16-09-2016 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 SMART SM00382 147 287 2.4E-9 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 Gene3D G3DSA:3.40.50.2300 4 116 2.4E-19 T 16-09-2016 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 Gene3D G3DSA:3.40.50.300 126 296 1.2E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 SMART SM00448 4 114 7.7E-18 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 SUPERFAMILY SSF52172 1 172 5.55E-26 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 SUPERFAMILY SSF52540 126 365 1.99E-57 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17150 e86caec266a8ae2c5ad7f72d7db56c6d 426 PANTHER PTHR32071:SF16 1 422 3.8E-162 T 16-09-2016 BER92_RS00835 43527e4977b457ab285d591ac71dd74e 296 PANTHER PTHR35862 1 296 1.3E-158 T 16-09-2016 BER92_RS00835 43527e4977b457ab285d591ac71dd74e 296 PANTHER PTHR35862:SF1 1 296 1.3E-158 T 16-09-2016 BER92_RS00835 43527e4977b457ab285d591ac71dd74e 296 PIRSF PIRSF020481 4 296 5.2E-117 T 16-09-2016 IPR014507 Baseplate assembly protein J, predicted BER92_RS00835 43527e4977b457ab285d591ac71dd74e 296 Pfam PF04865 Baseplate J-like protein 113 255 6.5E-25 T 16-09-2016 IPR006949 Baseplate protein J-like BER92_RS02930 45832fc50ffe38f14df4965484a5b04e 213 SUPERFAMILY SSF53098 100 206 1.77E-15 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS02930 45832fc50ffe38f14df4965484a5b04e 213 Gene3D G3DSA:3.30.420.10 101 165 3.5E-12 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS02930 45832fc50ffe38f14df4965484a5b04e 213 Pfam PF13276 HTH-like domain 26 79 2.3E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS02930 45832fc50ffe38f14df4965484a5b04e 213 Pfam PF00665 Integrase core domain 107 167 1.3E-12 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS02930 45832fc50ffe38f14df4965484a5b04e 213 PANTHER PTHR32552 1 170 4.0E-51 T 16-09-2016 BER92_RS02930 45832fc50ffe38f14df4965484a5b04e 213 Pfam PF13333 Integrase core domain 175 206 2.6E-5 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 SUPERFAMILY SSF160246 14 157 1.91E-32 T 16-09-2016 BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 392 406 - T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 Gene3D G3DSA:3.40.50.300 302 573 1.2E-92 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 SMART SM00382 325 446 7.5E-6 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 PANTHER PTHR30258 5 573 1.6E-234 T 16-09-2016 BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 92 572 3.7E-209 T 16-09-2016 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 53 161 1.5E-13 T 16-09-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 Gene3D G3DSA:3.30.450.90 167 297 3.4E-52 T 16-09-2016 BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 Pfam PF00437 Type II/IV secretion system protein 200 464 2.9E-84 T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 SUPERFAMILY SSF52540 182 572 2.91E-93 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04355 417420f6ffa3e06a29320b3674f37ba0 575 PANTHER PTHR30258:SF2 5 573 1.6E-234 T 16-09-2016 BER92_RS15335 00e4ab69313d4dd43dbbfef3acd6f22e 247 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 239 6.9E-107 T 16-09-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 BER92_RS15335 00e4ab69313d4dd43dbbfef3acd6f22e 247 Gene3D G3DSA:3.60.21.10 1 125 1.2E-19 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS15335 00e4ab69313d4dd43dbbfef3acd6f22e 247 Gene3D G3DSA:3.60.21.10 180 213 1.2E-19 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS15335 00e4ab69313d4dd43dbbfef3acd6f22e 247 PANTHER PTHR34990 1 245 3.7E-118 T 16-09-2016 BER92_RS15335 00e4ab69313d4dd43dbbfef3acd6f22e 247 Pfam PF00149 Calcineurin-like phosphoesterase 1 206 5.7E-8 T 16-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 BER92_RS15335 00e4ab69313d4dd43dbbfef3acd6f22e 247 PANTHER PTHR34990:SF1 1 245 3.7E-118 T 16-09-2016 BER92_RS15335 00e4ab69313d4dd43dbbfef3acd6f22e 247 SUPERFAMILY SSF56300 1 229 3.8E-32 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS15335 00e4ab69313d4dd43dbbfef3acd6f22e 247 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 247 120.574 T 16-09-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 Gene3D G3DSA:2.40.30.110 283 362 3.6E-23 T 16-09-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 SUPERFAMILY SSF101790 274 361 4.09E-21 T 16-09-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 Gene3D G3DSA:3.30.70.1400 54 137 1.9E-31 T 16-09-2016 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 259 6.3E-89 T 16-09-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 266 353 7.1E-18 T 16-09-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 PANTHER PTHR13847 5 357 2.7E-64 T 16-09-2016 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 Gene3D G3DSA:3.30.1360.120 144 236 2.0E-52 T 16-09-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 Gene3D G3DSA:3.30.1360.120 3 53 2.0E-52 T 16-09-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 45.532 T 16-09-2016 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 358 6.4E-129 T 16-09-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 PIRSF PIRSF006487 1 364 2.6E-85 T 16-09-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 PANTHER PTHR13847:SF5 5 357 2.7E-64 T 16-09-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BER92_RS05695 763e7e7126806c7a56bf9f4250c437f1 369 SUPERFAMILY SSF103025 3 281 2.69E-94 T 16-09-2016 BER92_RS16975 bfbdd996798c4806dd1c1386deb16d49 615 Pfam PF13519 von Willebrand factor type A domain 102 208 3.3E-11 T 16-09-2016 IPR002035 von Willebrand factor, type A BER92_RS16975 bfbdd996798c4806dd1c1386deb16d49 615 SUPERFAMILY SSF53300 99 277 6.27E-19 T 16-09-2016 IPR002035 von Willebrand factor, type A BER92_RS16975 bfbdd996798c4806dd1c1386deb16d49 615 PANTHER PTHR22550 7 507 1.4E-94 T 16-09-2016 BER92_RS16975 bfbdd996798c4806dd1c1386deb16d49 615 SMART SM00327 99 292 4.2E-11 T 16-09-2016 IPR002035 von Willebrand factor, type A BER92_RS16975 bfbdd996798c4806dd1c1386deb16d49 615 Gene3D G3DSA:1.25.40.10 362 441 1.8E-12 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS16975 bfbdd996798c4806dd1c1386deb16d49 615 PANTHER PTHR22550:SF5 7 507 1.4E-94 T 16-09-2016 BER92_RS16975 bfbdd996798c4806dd1c1386deb16d49 615 SMART SM00028 389 422 2.2E-7 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS16975 bfbdd996798c4806dd1c1386deb16d49 615 Pfam PF00515 Tetratricopeptide repeat 391 421 3.1E-10 T 16-09-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 BER92_RS16975 bfbdd996798c4806dd1c1386deb16d49 615 SUPERFAMILY SSF48452 363 438 3.98E-11 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 PANTHER PTHR21363 7 287 1.3E-53 T 16-09-2016 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 PANTHER PTHR21363 304 370 1.3E-53 T 16-09-2016 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 Pfam PF02153 Prephenate dehydrogenase 46 252 4.6E-25 T 16-09-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 Gene3D G3DSA:3.40.50.720 2 160 9.9E-29 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 SUPERFAMILY SSF55021 296 362 4.58E-9 T 16-09-2016 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 SUPERFAMILY SSF51735 7 151 6.5E-23 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 PANTHER PTHR21363:SF0 7 287 1.3E-53 T 16-09-2016 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 PANTHER PTHR21363:SF0 304 370 1.3E-53 T 16-09-2016 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 Pfam PF01842 ACT domain 298 358 3.1E-7 T 16-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 SUPERFAMILY SSF48179 154 255 1.47E-18 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 Gene3D G3DSA:1.10.3660.10 162 275 5.7E-16 T 16-09-2016 BER92_RS07985 d01dda61c3ac58862ffe5a706a90b73e 375 Gene3D G3DSA:3.30.70.260 298 361 5.2E-9 T 16-09-2016 BER92_RS08170 7318ccd89835909cdc79f84c9038c13a 328 PANTHER PTHR10584 5 326 1.2E-119 T 16-09-2016 BER92_RS08170 7318ccd89835909cdc79f84c9038c13a 328 PANTHER PTHR10584:SF161 5 326 1.2E-119 T 16-09-2016 BER92_RS08170 7318ccd89835909cdc79f84c9038c13a 328 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 257 270 - T 16-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BER92_RS08170 7318ccd89835909cdc79f84c9038c13a 328 SUPERFAMILY SSF53613 5 324 2.23E-76 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS08170 7318ccd89835909cdc79f84c9038c13a 328 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 37 61 - T 16-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BER92_RS08170 7318ccd89835909cdc79f84c9038c13a 328 Pfam PF00294 pfkB family carbohydrate kinase 6 315 1.6E-65 T 16-09-2016 IPR011611 Carbohydrate kinase PfkB BER92_RS08170 7318ccd89835909cdc79f84c9038c13a 328 Gene3D G3DSA:3.40.1190.20 2 327 1.5E-87 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS07770 99a4d7033817f353498830f6e6392256 178 PANTHER PTHR35604:SF2 1 176 2.6E-103 T 16-09-2016 BER92_RS07770 99a4d7033817f353498830f6e6392256 178 PANTHER PTHR35604 1 176 2.6E-103 T 16-09-2016 BER92_RS07770 99a4d7033817f353498830f6e6392256 178 Pfam PF01609 Transposase DDE domain 13 162 1.8E-29 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS02335 4a1743a6bc12a7d599cc37b2770d832f 295 PANTHER PTHR21621:SF0 1 293 5.3E-115 T 16-09-2016 BER92_RS02335 4a1743a6bc12a7d599cc37b2770d832f 295 Gene3D G3DSA:3.30.1490.20 103 174 7.8E-5 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS02335 4a1743a6bc12a7d599cc37b2770d832f 295 Gene3D G3DSA:3.40.50.20 8 102 6.9E-18 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS02335 4a1743a6bc12a7d599cc37b2770d832f 295 Gene3D G3DSA:3.30.470.20 175 277 2.0E-33 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS02335 4a1743a6bc12a7d599cc37b2770d832f 295 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 285 5.3E-77 T 16-09-2016 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 BER92_RS02335 4a1743a6bc12a7d599cc37b2770d832f 295 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 51.995 T 16-09-2016 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK BER92_RS02335 4a1743a6bc12a7d599cc37b2770d832f 295 PANTHER PTHR21621 1 293 5.3E-115 T 16-09-2016 BER92_RS02335 4a1743a6bc12a7d599cc37b2770d832f 295 Pfam PF08443 RimK-like ATP-grasp domain 98 285 1.4E-58 T 16-09-2016 IPR013651 ATP-grasp fold, RimK-type BER92_RS02335 4a1743a6bc12a7d599cc37b2770d832f 295 SUPERFAMILY SSF56059 98 288 4.07E-45 T 16-09-2016 BER92_RS00515 a2f2b65bbcb673b68ae20f94ae72ac6c 430 SUPERFAMILY SSF52540 80 366 8.57E-71 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00515 a2f2b65bbcb673b68ae20f94ae72ac6c 430 SMART SM00487 24 227 5.2E-57 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS00515 a2f2b65bbcb673b68ae20f94ae72ac6c 430 SMART SM00490 263 344 2.3E-29 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS00515 a2f2b65bbcb673b68ae20f94ae72ac6c 430 Pfam PF00270 DEAD/DEAH box helicase 29 196 1.5E-45 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS00515 a2f2b65bbcb673b68ae20f94ae72ac6c 430 PANTHER PTHR24031 1 367 7.8E-149 T 16-09-2016 BER92_RS00515 a2f2b65bbcb673b68ae20f94ae72ac6c 430 Gene3D G3DSA:3.40.50.300 217 369 7.9E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00515 a2f2b65bbcb673b68ae20f94ae72ac6c 430 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 16-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER92_RS00515 a2f2b65bbcb673b68ae20f94ae72ac6c 430 Pfam PF00271 Helicase conserved C-terminal domain 239 344 1.8E-26 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS00515 a2f2b65bbcb673b68ae20f94ae72ac6c 430 Gene3D G3DSA:3.40.50.300 2 216 1.1E-71 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 Gene3D G3DSA:3.40.1380.10 63 192 8.4E-44 T 16-09-2016 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 PRINTS PR00126 ATP synthase gamma subunit signature 74 93 6.2E-38 T 16-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 PRINTS PR00126 ATP synthase gamma subunit signature 167 184 6.2E-38 T 16-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 6.2E-38 T 16-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 6.2E-38 T 16-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 Pfam PF00231 ATP synthase 5 286 1.9E-92 T 16-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 2.0E-106 T 16-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 Gene3D G3DSA:1.10.287.80 19 60 1.4E-38 T 16-09-2016 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 Gene3D G3DSA:1.10.287.80 202 235 1.4E-38 T 16-09-2016 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.709 T 16-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 SUPERFAMILY SSF52943 3 287 1.96E-93 T 16-09-2016 IPR023633 ATPase, F1 complex, gamma subunit domain BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 16-09-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 PANTHER PTHR11693 1 287 8.2E-128 T 16-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15900 48e62d6278a7580811ae90013a33ff56 287 Gene3D G3DSA:1.10.287.80 236 282 5.0E-30 T 16-09-2016 BER92_RS05750 23ec56d7ab5ca88ac0c605cd97ca2f57 453 Pfam PF05598 Transposase domain (DUF772) 78 152 8.7E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS05750 23ec56d7ab5ca88ac0c605cd97ca2f57 453 PANTHER PTHR33803 1 453 0.0 T 16-09-2016 BER92_RS05750 23ec56d7ab5ca88ac0c605cd97ca2f57 453 Pfam PF01609 Transposase DDE domain 303 440 1.9E-5 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS05750 23ec56d7ab5ca88ac0c605cd97ca2f57 453 PANTHER PTHR33803:SF1 1 453 0.0 T 16-09-2016 BER92_RS07055 6fdf3ca006effff534efa9d3214a9fb4 345 SUPERFAMILY SSF56281 24 335 1.31E-57 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS07055 6fdf3ca006effff534efa9d3214a9fb4 345 PANTHER PTHR11203:SF35 24 228 3.2E-105 T 16-09-2016 BER92_RS07055 6fdf3ca006effff534efa9d3214a9fb4 345 PANTHER PTHR11203 24 228 3.2E-105 T 16-09-2016 BER92_RS07055 6fdf3ca006effff534efa9d3214a9fb4 345 Gene3D G3DSA:3.60.15.10 46 200 6.6E-15 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS07055 6fdf3ca006effff534efa9d3214a9fb4 345 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 21 344 3.0E-145 T 16-09-2016 IPR026360 Putative exonuclease, DNA ligase-associated BER92_RS05780 2723fa30966f801a69a57c04ac6d7823 296 Gene3D G3DSA:1.10.287.480 180 223 2.7E-11 T 16-09-2016 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain BER92_RS05780 2723fa30966f801a69a57c04ac6d7823 296 SUPERFAMILY SSF64397 4 233 9.03E-59 T 16-09-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 BER92_RS05780 2723fa30966f801a69a57c04ac6d7823 296 PANTHER PTHR30111:SF1 1 289 1.5E-67 T 16-09-2016 BER92_RS05780 2723fa30966f801a69a57c04ac6d7823 296 Gene3D G3DSA:3.90.1280.10 225 283 4.5E-21 T 16-09-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 BER92_RS05780 2723fa30966f801a69a57c04ac6d7823 296 Gene3D G3DSA:3.55.30.10 1 177 1.1E-52 T 16-09-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 BER92_RS05780 2723fa30966f801a69a57c04ac6d7823 296 Pfam PF01430 Hsp33 protein 5 273 2.7E-76 T 16-09-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BER92_RS05780 2723fa30966f801a69a57c04ac6d7823 296 PANTHER PTHR30111 1 289 1.5E-67 T 16-09-2016 BER92_RS05780 2723fa30966f801a69a57c04ac6d7823 296 PIRSF PIRSF005261 1 286 8.8E-94 T 16-09-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BER92_RS05780 2723fa30966f801a69a57c04ac6d7823 296 SUPERFAMILY SSF118352 226 282 7.46E-17 T 16-09-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 Gene3D G3DSA:3.30.2090.10 715 811 1.0E-18 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 Gene3D G3DSA:3.30.2090.10 181 275 1.5E-27 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 Gene3D G3DSA:1.10.3850.10 279 498 2.8E-57 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 Gene3D G3DSA:1.10.3850.10 815 1029 8.5E-55 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82693 563 664 7.32E-28 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PRINTS PR00702 Acriflavin resistance protein family signature 617 631 2.9E-98 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.9E-98 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.9E-98 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.9E-98 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PRINTS PR00702 Acriflavin resistance protein family signature 550 567 2.9E-98 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.9E-98 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.9E-98 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.9E-98 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.9E-98 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82714 182 271 3.4E-22 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82693 38 132 5.06E-27 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 Gene3D G3DSA:3.30.70.1430 565 664 1.2E-31 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82866 296 497 3.14E-46 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PANTHER PTHR32063 1 1056 0.0 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 PANTHER PTHR32063:SF13 1 1056 0.0 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1040 0.0 T 16-09-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82866 833 1028 3.92E-44 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 Pfam PF00873 AcrB/AcrD/AcrF family 1 1028 0.0 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82714 716 809 1.57E-13 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82693 135 182 7.15E-22 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82693 274 330 7.15E-22 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82693 809 858 9.68E-26 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 SUPERFAMILY SSF82693 665 715 9.68E-26 T 16-09-2016 BER92_RS07575 851f4a9ad8b241266326828b7df798ce 1056 Gene3D G3DSA:3.30.70.1430 38 139 9.3E-33 T 16-09-2016 BER92_RS16020 f7f6a06f9b38e38d2917014a5ed74d2a 128 Pfam PF01609 Transposase DDE domain 2 118 1.5E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16020 f7f6a06f9b38e38d2917014a5ed74d2a 128 PANTHER PTHR30007 1 122 1.4E-21 T 16-09-2016 BER92_RS16020 f7f6a06f9b38e38d2917014a5ed74d2a 128 PANTHER PTHR30007:SF0 1 122 1.4E-21 T 16-09-2016 BER92_RS06445 052be3701ae801a9f3890bae631e881f 234 PANTHER PTHR30251 1 233 8.5E-19 T 16-09-2016 BER92_RS06445 052be3701ae801a9f3890bae631e881f 234 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 28 139 2.0E-7 T 16-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BER92_RS06445 052be3701ae801a9f3890bae631e881f 234 PANTHER PTHR30251:SF4 1 233 8.5E-19 T 16-09-2016 BER92_RS06445 052be3701ae801a9f3890bae631e881f 234 Gene3D G3DSA:2.60.40.360 28 122 3.6E-8 T 16-09-2016 IPR008962 PapD-like BER92_RS06445 052be3701ae801a9f3890bae631e881f 234 SUPERFAMILY SSF49354 23 140 8.11E-16 T 16-09-2016 IPR008962 PapD-like BER92_RS00085 234facad01f048442d215eace42c0d15 486 Pfam PF13091 PLD-like domain 328 448 6.1E-25 T 16-09-2016 IPR025202 Phospholipase D-like domain BER92_RS00085 234facad01f048442d215eace42c0d15 486 Pfam PF13091 PLD-like domain 134 263 4.4E-18 T 16-09-2016 IPR025202 Phospholipase D-like domain BER92_RS00085 234facad01f048442d215eace42c0d15 486 Gene3D G3DSA:3.30.870.10 112 319 6.9E-49 T 16-09-2016 BER92_RS00085 234facad01f048442d215eace42c0d15 486 SUPERFAMILY SSF56024 270 463 3.36E-44 T 16-09-2016 BER92_RS00085 234facad01f048442d215eace42c0d15 486 PANTHER PTHR21248:SF5 28 486 4.0E-105 T 16-09-2016 BER92_RS00085 234facad01f048442d215eace42c0d15 486 Gene3D G3DSA:3.30.870.10 320 461 1.6E-36 T 16-09-2016 BER92_RS00085 234facad01f048442d215eace42c0d15 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 19 486 1.8E-117 T 16-09-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 BER92_RS00085 234facad01f048442d215eace42c0d15 486 SMART SM00155 400 427 5.6E-5 T 16-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 BER92_RS00085 234facad01f048442d215eace42c0d15 486 SMART SM00155 219 246 0.004 T 16-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 BER92_RS00085 234facad01f048442d215eace42c0d15 486 PANTHER PTHR21248 28 486 4.0E-105 T 16-09-2016 BER92_RS00085 234facad01f048442d215eace42c0d15 486 SUPERFAMILY SSF56024 74 317 2.39E-48 T 16-09-2016 BER92_RS13565 a3af996cadee0cca20cd2909e6add68c 497 Pfam PF07687 Peptidase dimerisation domain 207 367 2.5E-12 T 16-09-2016 IPR011650 Peptidase M20, dimerisation domain BER92_RS13565 a3af996cadee0cca20cd2909e6add68c 497 SUPERFAMILY SSF53187 383 468 5.43E-47 T 16-09-2016 BER92_RS13565 a3af996cadee0cca20cd2909e6add68c 497 SUPERFAMILY SSF53187 11 209 5.43E-47 T 16-09-2016 BER92_RS13565 a3af996cadee0cca20cd2909e6add68c 497 Pfam PF01546 Peptidase family M20/M25/M40 95 466 1.5E-20 T 16-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 BER92_RS13565 a3af996cadee0cca20cd2909e6add68c 497 Gene3D G3DSA:3.30.70.360 209 375 2.6E-30 T 16-09-2016 IPR011650 Peptidase M20, dimerisation domain BER92_RS13565 a3af996cadee0cca20cd2909e6add68c 497 Gene3D G3DSA:3.40.630.10 5 203 3.5E-46 T 16-09-2016 BER92_RS13565 a3af996cadee0cca20cd2909e6add68c 497 Gene3D G3DSA:3.40.630.10 381 468 3.5E-46 T 16-09-2016 BER92_RS13565 a3af996cadee0cca20cd2909e6add68c 497 PANTHER PTHR11014 1 474 2.2E-203 T 16-09-2016 BER92_RS13565 a3af996cadee0cca20cd2909e6add68c 497 PANTHER PTHR11014:SF88 1 474 2.2E-203 T 16-09-2016 BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 PANTHER PTHR21152:SF1 3 361 4.5E-163 T 16-09-2016 BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 Gene3D G3DSA:3.90.1150.10 258 360 2.5E-38 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 Pfam PF00266 Aminotransferase class-V 5 348 1.8E-47 T 16-09-2016 IPR000192 Aminotransferase class V domain BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 PANTHER PTHR21152 3 361 4.5E-163 T 16-09-2016 BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 SUPERFAMILY SSF53383 1 359 4.82E-105 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 Gene3D G3DSA:3.40.640.10 17 257 2.0E-90 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 PIRSF PIRSF000525 1 361 8.7E-137 T 16-09-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 206 - T 16-09-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 360 2.3E-146 T 16-09-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 BER92_RS12535 51ca25682225d43d0ce8f18fad044b7e 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 360 47.641 T 16-09-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 Pfam PF00873 AcrB/AcrD/AcrF family 4 1051 5.1E-296 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 Gene3D G3DSA:1.20.1640.10 283 491 8.9E-59 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 SUPERFAMILY SSF82693 136 180 3.4E-23 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 SUPERFAMILY SSF82693 266 322 3.4E-23 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 Gene3D G3DSA:3.30.2090.10 709 779 2.4E-12 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 Gene3D G3DSA:3.30.2090.10 817 830 2.4E-12 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 Gene3D G3DSA:3.30.2090.10 181 263 5.7E-16 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PANTHER PTHR32063 819 1065 0.0 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PANTHER PTHR32063:SF21 819 1065 0.0 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PANTHER PTHR32063:SF21 1 782 0.0 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 SUPERFAMILY SSF82714 181 265 2.09E-15 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 SUPERFAMILY SSF82866 288 489 2.88E-49 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 SUPERFAMILY SSF82693 40 131 9.07E-21 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 Gene3D G3DSA:3.30.70.1430 562 651 3.0E-6 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PANTHER PTHR32063 1 782 0.0 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 SUPERFAMILY SSF82693 559 655 4.88E-12 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 SUPERFAMILY SSF82866 831 1054 1.7E-44 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 Gene3D G3DSA:3.30.70.1430 40 139 1.6E-26 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 Gene3D G3DSA:1.10.3850.10 838 1053 3.1E-54 T 16-09-2016 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 2.6E-72 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.6E-72 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PRINTS PR00702 Acriflavin resistance protein family signature 546 563 2.6E-72 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.6E-72 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 2.6E-72 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PRINTS PR00702 Acriflavin resistance protein family signature 613 627 2.6E-72 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 2.6E-72 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 2.6E-72 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 2.6E-72 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS00295 043f975971ec08f11fdcd2d665a0de18 1078 SUPERFAMILY SSF82714 710 780 1.03E-10 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS07280 33af462864d1f0b57c8978e4314518b4 162 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 10 159 26.603 T 16-09-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 BER92_RS07280 33af462864d1f0b57c8978e4314518b4 162 Pfam PF12838 4Fe-4S dicluster domain 62 115 8.9E-12 T 16-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER92_RS07280 33af462864d1f0b57c8978e4314518b4 162 PANTHER PTHR10849 4 162 2.3E-88 T 16-09-2016 BER92_RS07280 33af462864d1f0b57c8978e4314518b4 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 16-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER92_RS07280 33af462864d1f0b57c8978e4314518b4 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 63 74 - T 16-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER92_RS07280 33af462864d1f0b57c8978e4314518b4 162 SUPERFAMILY SSF54862 36 145 5.44E-25 T 16-09-2016 BER92_RS07280 33af462864d1f0b57c8978e4314518b4 162 PANTHER PTHR10849:SF20 4 162 2.3E-88 T 16-09-2016 BER92_RS07280 33af462864d1f0b57c8978e4314518b4 162 Gene3D G3DSA:1.10.1060.10 19 128 1.3E-20 T 16-09-2016 BER92_RS07280 33af462864d1f0b57c8978e4314518b4 162 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 19 139 2.9E-44 T 16-09-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 5 343 58.173 T 16-09-2016 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378|UniPathway: UPA00046 BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 SUPERFAMILY SSF51735 145 308 7.27E-35 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 SUPERFAMILY SSF50129 3 177 1.19E-57 T 16-09-2016 IPR011032 GroES-like BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 Gene3D G3DSA:3.90.180.10 2 176 1.7E-53 T 16-09-2016 IPR011032 GroES-like BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 PANTHER PTHR11695:SF285 17 344 6.5E-147 T 16-09-2016 BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 Pfam PF00107 Zinc-binding dehydrogenase 178 305 3.9E-28 T 16-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 SMART SM00829 16 341 6.1E-4 T 16-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 7 343 1.5E-146 T 16-09-2016 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378|UniPathway: UPA00046 BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 66 80 - T 16-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 PANTHER PTHR11695 17 344 6.5E-147 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 Gene3D G3DSA:3.40.50.720 177 290 1.6E-30 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02285 f709349f840a551e1173af6a5fc37414 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 139 6.8E-34 T 16-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 Gene3D G3DSA:3.40.50.300 214 370 2.7E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 SMART SM00490 260 341 2.1E-31 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 Pfam PF00271 Helicase conserved C-terminal domain 234 341 8.2E-28 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 PANTHER PTHR24031:SF0 1 461 6.0E-202 T 16-09-2016 BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 16-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 Pfam PF00270 DEAD/DEAH box helicase 25 198 1.3E-48 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 Gene3D G3DSA:3.40.50.300 1 213 6.0E-82 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 PANTHER PTHR24031 1 461 6.0E-202 T 16-09-2016 BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 SMART SM00487 20 224 6.5E-60 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS15740 4287d2f0b1670de08f820e824bcb658d 464 SUPERFAMILY SSF52540 75 361 8.28E-74 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12185 e453b1b28f105d9625de7a5bb96dfa94 149 PANTHER PTHR36919 1 148 7.2E-64 T 16-09-2016 BER92_RS12185 e453b1b28f105d9625de7a5bb96dfa94 149 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 29 148 2.0E-33 T 16-09-2016 IPR019223 Domain of unknown function DUF2147 BER92_RS12185 e453b1b28f105d9625de7a5bb96dfa94 149 PANTHER PTHR36919:SF1 1 148 7.2E-64 T 16-09-2016 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 PANTHER PTHR11728 5 336 6.6E-132 T 16-09-2016 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 241 258 3.9E-40 T 16-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 3.9E-40 T 16-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 3.9E-40 T 16-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 201 225 3.9E-40 T 16-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 176 200 3.9E-40 T 16-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 3.9E-40 T 16-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 183 321 8.7E-46 T 16-09-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 Gene3D G3DSA:1.10.1040.10 187 329 3.3E-50 T 16-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 SUPERFAMILY SSF48179 182 335 9.69E-51 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 191 212 - T 16-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 SUPERFAMILY SSF51735 5 183 9.25E-51 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 163 5.9E-51 T 16-09-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 325 38.906 T 16-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 Gene3D G3DSA:3.40.50.720 3 186 2.9E-61 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02090 333cf2e53778bc0726c72c6973512674 343 PIRSF PIRSF000114 1 335 6.4E-97 T 16-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 BER92_RS13780 b88e68ee086b9eb999453c6df04ef758 328 Gene3D G3DSA:3.40.50.300 99 319 5.3E-69 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13780 b88e68ee086b9eb999453c6df04ef758 328 PANTHER PTHR24221:SF138 9 315 6.0E-101 T 16-09-2016 BER92_RS13780 b88e68ee086b9eb999453c6df04ef758 328 Gene3D G3DSA:1.20.1560.10 9 84 6.9E-8 T 16-09-2016 BER92_RS13780 b88e68ee086b9eb999453c6df04ef758 328 ProSitePatterns PS00211 ABC transporters family signature. 239 253 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS13780 b88e68ee086b9eb999453c6df04ef758 328 Pfam PF00005 ABC transporter 119 267 6.1E-32 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS13780 b88e68ee086b9eb999453c6df04ef758 328 SUPERFAMILY SSF90123 8 91 1.83E-9 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS13780 b88e68ee086b9eb999453c6df04ef758 328 SUPERFAMILY SSF52540 94 314 1.15E-68 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13780 b88e68ee086b9eb999453c6df04ef758 328 PANTHER PTHR24221 9 315 6.0E-101 T 16-09-2016 BER92_RS13780 b88e68ee086b9eb999453c6df04ef758 328 SMART SM00382 127 322 6.4E-18 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS08120 0a351f0325a96c1893609f68c5ba6f75 120 Gene3D G3DSA:1.10.10.10 4 75 2.9E-23 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08120 0a351f0325a96c1893609f68c5ba6f75 120 PANTHER PTHR38445 1 114 4.0E-24 T 16-09-2016 BER92_RS08120 0a351f0325a96c1893609f68c5ba6f75 120 SUPERFAMILY SSF46785 5 79 5.96E-19 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08120 0a351f0325a96c1893609f68c5ba6f75 120 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 6.1E-14 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS08120 0a351f0325a96c1893609f68c5ba6f75 120 SMART SM00345 16 75 5.9E-12 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS08120 0a351f0325a96c1893609f68c5ba6f75 120 PANTHER PTHR38445:SF2 1 114 4.0E-24 T 16-09-2016 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 Gene3D G3DSA:1.20.140.10 222 384 1.9E-64 T 16-09-2016 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 Gene3D G3DSA:1.10.540.10 4 124 3.4E-38 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 PANTHER PTHR10909 6 384 4.9E-291 T 16-09-2016 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 PIRSF PIRSF016578 15 387 2.1E-12 T 16-09-2016 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 Gene3D G3DSA:2.40.110.10 126 221 5.7E-40 T 16-09-2016 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 16-09-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 PANTHER PTHR10909:SF326 6 384 4.9E-291 T 16-09-2016 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 1.8E-42 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 SUPERFAMILY SSF47203 234 385 6.12E-46 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 16-09-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 SUPERFAMILY SSF56645 5 245 5.37E-81 T 16-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 123 1.4E-32 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS16630 5ef5add69d505061ef5c9d1fb3d65fbc 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 2.6E-26 T 16-09-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 Gene3D G3DSA:1.10.3860.10 5 418 5.1E-108 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 PRINTS PR00173 Glutamate-aspartate symporter signature 370 390 7.4E-24 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 PRINTS PR00173 Glutamate-aspartate symporter signature 308 334 7.4E-24 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 PRINTS PR00173 Glutamate-aspartate symporter signature 78 103 7.4E-24 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 PRINTS PR00173 Glutamate-aspartate symporter signature 343 362 7.4E-24 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 PRINTS PR00173 Glutamate-aspartate symporter signature 206 225 7.4E-24 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 PRINTS PR00173 Glutamate-aspartate symporter signature 159 181 7.4E-24 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 PRINTS PR00173 Glutamate-aspartate symporter signature 48 68 7.4E-24 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 SUPERFAMILY SSF118215 12 415 8.11E-102 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 PANTHER PTHR11958 3 446 1.9E-244 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 Pfam PF00375 Sodium:dicarboxylate symporter family 13 415 3.8E-113 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS12700 60f942454d72c3f60d246a81e0387dcc 446 PANTHER PTHR11958:SF59 3 446 1.9E-244 T 16-09-2016 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 SMART SM00852 181 322 1.8E-28 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 Pfam PF03454 MoeA C-terminal region (domain IV) 338 395 6.0E-5 T 16-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 SUPERFAMILY SSF63867 333 406 4.45E-7 T 16-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 Pfam PF00994 Probable molybdopterin binding domain 182 321 1.2E-24 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 Pfam PF03453 MoeA N-terminal region (domain I and II) 2 168 1.2E-30 T 16-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 PANTHER PTHR10192 1 410 7.2E-164 T 16-09-2016 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 SUPERFAMILY SSF63882 1 177 2.22E-43 T 16-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 Gene3D G3DSA:2.170.190.11 44 132 6.5E-23 T 16-09-2016 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 Gene3D G3DSA:2.40.340.10 334 397 1.2E-5 T 16-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 256 290 - T 16-09-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 Gene3D G3DSA:3.40.980.10 164 333 2.1E-45 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 SUPERFAMILY SSF53218 176 326 7.07E-32 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 Gene3D G3DSA:3.90.105.10 133 163 2.9E-14 T 16-09-2016 BER92_RS10035 2cccb9a447838663f2b3c46b3b6ebd29 417 PANTHER PTHR10192:SF11 1 410 7.2E-164 T 16-09-2016 BER92_RS03385 d33540af84df8d158af5e39e4a7c363a 371 Gene3D G3DSA:1.10.3150.10 123 338 8.9E-45 T 16-09-2016 IPR013976 Metal-dependent hydrolase HDOD BER92_RS03385 d33540af84df8d158af5e39e4a7c363a 371 SUPERFAMILY SSF52172 1 131 2.05E-8 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS03385 d33540af84df8d158af5e39e4a7c363a 371 PANTHER PTHR33525 134 268 8.2E-18 T 16-09-2016 BER92_RS03385 d33540af84df8d158af5e39e4a7c363a 371 SUPERFAMILY SSF109604 129 340 5.96E-37 T 16-09-2016 BER92_RS03385 d33540af84df8d158af5e39e4a7c363a 371 Gene3D G3DSA:3.40.50.2300 2 122 3.1E-6 T 16-09-2016 BER92_RS03385 d33540af84df8d158af5e39e4a7c363a 371 PIRSF PIRSF036883 1 369 7.9E-156 T 16-09-2016 IPR014626 Signal transduction response regulator with modified HD-GYP domain, putative BER92_RS03385 d33540af84df8d158af5e39e4a7c363a 371 PANTHER PTHR33525:SF3 134 268 8.2E-18 T 16-09-2016 BER92_RS03385 d33540af84df8d158af5e39e4a7c363a 371 Pfam PF08668 HDOD domain 140 268 4.6E-24 T 16-09-2016 IPR013976 Metal-dependent hydrolase HDOD BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 PIRSF PIRSF000381 1 885 0.0 T 16-09-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 SMART SM01018 322 405 5.0E-45 T 16-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 Pfam PF00809 Pterin binding enzyme 27 265 2.6E-59 T 16-09-2016 IPR000489 Pterin-binding domain GO:0042558 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 SUPERFAMILY SSF52242 413 563 2.88E-43 T 16-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 Pfam PF02310 B12 binding domain 417 508 9.4E-20 T 16-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 Gene3D G3DSA:1.10.1240.10 316 402 8.6E-38 T 16-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 Gene3D G3DSA:3.10.196.10 627 917 1.8E-107 T 16-09-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 TIGRFAM TIGR02082 metH: methionine synthase 4 882 0.0 T 16-09-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 SUPERFAMILY SSF47644 318 404 1.31E-28 T 16-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 Gene3D G3DSA:3.20.20.20 23 303 1.4E-111 T 16-09-2016 IPR000489 Pterin-binding domain GO:0042558 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 SUPERFAMILY SSF56507 571 917 2.88E-128 T 16-09-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 Gene3D G3DSA:3.40.50.280 413 563 1.5E-61 T 16-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 SUPERFAMILY SSF51717 23 297 3.66E-86 T 16-09-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 608 898 4.6E-122 T 16-09-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 BER92_RS08180 5ca077dd0facefe6d39d132ff1b73add 917 Pfam PF02607 B12 binding domain 325 397 4.8E-27 T 16-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain BER92_RS17570 2b9d91f2fb82b05de1afb139c3056dc7 210 Gene3D G3DSA:3.40.50.720 1 210 2.7E-42 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17570 2b9d91f2fb82b05de1afb139c3056dc7 210 PANTHER PTHR14097 1 200 5.1E-64 T 16-09-2016 BER92_RS17570 2b9d91f2fb82b05de1afb139c3056dc7 210 SUPERFAMILY SSF51735 1 201 5.96E-36 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17570 2b9d91f2fb82b05de1afb139c3056dc7 210 Pfam PF13460 NAD(P)H-binding 7 148 1.3E-7 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17570 2b9d91f2fb82b05de1afb139c3056dc7 210 PANTHER PTHR14097:SF7 1 200 5.1E-64 T 16-09-2016 BER92_RS16740 38b6081a3449af5aa9699381597d3193 667 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 150 3.3E-20 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS16740 38b6081a3449af5aa9699381597d3193 667 Gene3D G3DSA:2.170.130.10 17 151 1.1E-23 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS16740 38b6081a3449af5aa9699381597d3193 667 Gene3D G3DSA:2.40.170.20 152 667 6.5E-72 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS16740 38b6081a3449af5aa9699381597d3193 667 PANTHER PTHR32552 1 667 1.4E-42 T 16-09-2016 BER92_RS16740 38b6081a3449af5aa9699381597d3193 667 SUPERFAMILY SSF56935 18 667 2.26E-94 T 16-09-2016 BER92_RS16740 38b6081a3449af5aa9699381597d3193 667 Pfam PF00593 TonB dependent receptor 425 664 1.8E-20 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03985 fec16dba70dd2910802de828f2d67165 455 TIGRFAM TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 3 453 3.5E-181 T 16-09-2016 IPR012766 Alpha,alpha-trehalose-phosphate synthase GO:0003825|GO:0005992 KEGG: 00500+2.4.1.15 BER92_RS03985 fec16dba70dd2910802de828f2d67165 455 Gene3D G3DSA:3.40.50.2000 1 237 2.6E-63 T 16-09-2016 BER92_RS03985 fec16dba70dd2910802de828f2d67165 455 SUPERFAMILY SSF53756 2 454 2.83E-139 T 16-09-2016 BER92_RS03985 fec16dba70dd2910802de828f2d67165 455 Gene3D G3DSA:3.40.50.2000 238 437 3.4E-71 T 16-09-2016 BER92_RS03985 fec16dba70dd2910802de828f2d67165 455 PANTHER PTHR10788:SF6 1 455 6.9E-189 T 16-09-2016 BER92_RS03985 fec16dba70dd2910802de828f2d67165 455 PANTHER PTHR10788 1 455 6.9E-189 T 16-09-2016 BER92_RS03985 fec16dba70dd2910802de828f2d67165 455 Pfam PF00982 Glycosyltransferase family 20 16 453 3.5E-118 T 16-09-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 BER92_RS06425 b4e5373ff61cd333fd69e7b2f310b999 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 237 1.6E-98 T 16-09-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 BER92_RS06425 b4e5373ff61cd333fd69e7b2f310b999 240 PANTHER PTHR21499:SF23 6 239 6.2E-112 T 16-09-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 BER92_RS06425 b4e5373ff61cd333fd69e7b2f310b999 240 Gene3D G3DSA:3.40.1160.10 5 237 5.3E-86 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS06425 b4e5373ff61cd333fd69e7b2f310b999 240 SUPERFAMILY SSF53633 5 236 1.44E-73 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS06425 b4e5373ff61cd333fd69e7b2f310b999 240 PANTHER PTHR21499 6 239 6.2E-112 T 16-09-2016 BER92_RS06425 b4e5373ff61cd333fd69e7b2f310b999 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 45.33 T 16-09-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 BER92_RS06425 b4e5373ff61cd333fd69e7b2f310b999 240 Pfam PF00696 Amino acid kinase family 8 215 9.1E-31 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS06425 b4e5373ff61cd333fd69e7b2f310b999 240 PIRSF PIRSF005650 1 240 4.1E-94 T 16-09-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 Pfam PF00437 Type II/IV secretion system protein 202 468 8.5E-85 T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 SUPERFAMILY SSF52540 189 576 5.11E-97 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 15 578 1.0E-266 T 16-09-2016 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 PANTHER PTHR30258 2 577 2.7E-263 T 16-09-2016 BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 SUPERFAMILY SSF160246 11 148 7.06E-33 T 16-09-2016 BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 50 152 1.0E-19 T 16-09-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 PANTHER PTHR30258:SF1 2 577 2.7E-263 T 16-09-2016 BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 Gene3D G3DSA:3.30.450.90 188 301 1.1E-50 T 16-09-2016 BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 Gene3D G3DSA:3.40.50.300 308 577 5.3E-96 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03905 b9de3d4ae9bf2d213e8d312eba9ad3e6 578 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 396 410 - T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS03790 c7520bc4437837effe501522fba9dabe 278 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 4 237 24.311 T 16-09-2016 IPR026579 Cell division protein FtsQ GO:0000917 BER92_RS03790 c7520bc4437837effe501522fba9dabe 278 PANTHER PTHR35851:SF1 1 244 4.5E-76 T 16-09-2016 BER92_RS03790 c7520bc4437837effe501522fba9dabe 278 Pfam PF03799 Cell division protein FtsQ 107 219 3.5E-22 T 16-09-2016 IPR005548 Cell division protein FtsQ/DivIB BER92_RS03790 c7520bc4437837effe501522fba9dabe 278 Pfam PF08478 POTRA domain, FtsQ-type 35 103 8.0E-18 T 16-09-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type BER92_RS03790 c7520bc4437837effe501522fba9dabe 278 PANTHER PTHR35851 1 244 4.5E-76 T 16-09-2016 BER92_RS12900 dfbde2baae01c5d3b28d9b4868d591e4 130 Pfam PF09487 Bacterial type III secretion protein (HrpB2) 18 130 1.3E-40 T 16-09-2016 IPR013391 Type III secretion protein HrpB2 BER92_RS12900 dfbde2baae01c5d3b28d9b4868d591e4 130 TIGRFAM TIGR02558 HrpB2: type III secretion protein HrpB2 9 130 8.4E-47 T 16-09-2016 IPR013391 Type III secretion protein HrpB2 BER92_RS03695 3d3b3f30fc2270368bdfd6b59bc51b5c 122 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 4 118 4.4E-32 T 16-09-2016 IPR003509 Uncharacterised protein family UPF0102 BER92_RS03695 3d3b3f30fc2270368bdfd6b59bc51b5c 122 Pfam PF02021 Uncharacterised protein family UPF0102 13 102 6.3E-21 T 16-09-2016 IPR003509 Uncharacterised protein family UPF0102 BER92_RS03695 3d3b3f30fc2270368bdfd6b59bc51b5c 122 PANTHER PTHR34039 1 121 3.3E-38 T 16-09-2016 BER92_RS03695 3d3b3f30fc2270368bdfd6b59bc51b5c 122 SUPERFAMILY SSF52980 6 102 1.79E-14 T 16-09-2016 IPR011335 Restriction endonuclease type II-like BER92_RS03695 3d3b3f30fc2270368bdfd6b59bc51b5c 122 PANTHER PTHR34039:SF1 1 121 3.3E-38 T 16-09-2016 BER92_RS03695 3d3b3f30fc2270368bdfd6b59bc51b5c 122 Gene3D G3DSA:3.40.1350.10 13 121 1.2E-30 T 16-09-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 BER92_RS03695 3d3b3f30fc2270368bdfd6b59bc51b5c 122 Hamap MF_00048 UPF0102 protein YraN [yraN]. 5 116 21.497 T 16-09-2016 IPR003509 Uncharacterised protein family UPF0102 BER92_RS08490 edde237093b3dc7665331159caa2bae7 354 Gene3D G3DSA:3.40.50.10470 163 348 4.6E-66 T 16-09-2016 BER92_RS08490 edde237093b3dc7665331159caa2bae7 354 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 14 352 38.509 T 16-09-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 BER92_RS08490 edde237093b3dc7665331159caa2bae7 354 PANTHER PTHR10233 15 347 5.3E-156 T 16-09-2016 BER92_RS08490 edde237093b3dc7665331159caa2bae7 354 PANTHER PTHR10233:SF6 15 347 5.3E-156 T 16-09-2016 BER92_RS08490 edde237093b3dc7665331159caa2bae7 354 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 42 341 2.4E-110 T 16-09-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 BER92_RS08490 edde237093b3dc7665331159caa2bae7 354 SUPERFAMILY SSF100950 12 347 1.26E-112 T 16-09-2016 BER92_RS08490 edde237093b3dc7665331159caa2bae7 354 Pfam PF01008 Initiation factor 2 subunit family 57 341 1.7E-75 T 16-09-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 BER92_RS08490 edde237093b3dc7665331159caa2bae7 354 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 17 341 2.4E-135 T 16-09-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 BER92_RS08490 edde237093b3dc7665331159caa2bae7 354 Gene3D G3DSA:1.20.120.420 15 162 6.3E-50 T 16-09-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 9 64 1.1E-16 T 16-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 7 25 2.8E-48 T 16-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 54 78 2.8E-48 T 16-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 90 106 2.8E-48 T 16-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 25 46 2.8E-48 T 16-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 117 139 2.8E-48 T 16-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 PANTHER PTHR21342 1 160 1.2E-78 T 16-09-2016 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 Gene3D G3DSA:3.40.50.620 7 162 4.3E-52 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 PANTHER PTHR21342:SF1 1 160 1.2E-78 T 16-09-2016 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 7 163 35.815 T 16-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 SUPERFAMILY SSF52374 7 161 2.44E-44 T 16-09-2016 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 Pfam PF01467 Cytidylyltransferase-like 10 138 2.0E-21 T 16-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BER92_RS12650 21ecb8658ee631be7aa14adbfd31bf4c 168 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 8 160 1.3E-57 T 16-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 BER92_RS13395 ee63d99ca1089bae6c4bb7fc58032572 101 SUPERFAMILY SSF54506 41 100 8.16E-10 T 16-09-2016 BER92_RS13395 ee63d99ca1089bae6c4bb7fc58032572 101 PANTHER PTHR13774:SF18 41 101 1.2E-15 T 16-09-2016 BER92_RS13395 ee63d99ca1089bae6c4bb7fc58032572 101 Gene3D G3DSA:3.10.310.10 41 89 4.0E-12 T 16-09-2016 BER92_RS13395 ee63d99ca1089bae6c4bb7fc58032572 101 PANTHER PTHR13774 41 101 1.2E-15 T 16-09-2016 BER92_RS10550 99e20cc99c8634609cfe4f6a9c8c1faf 64 PANTHER PTHR32063:SF24 1 55 9.5E-13 T 16-09-2016 BER92_RS10550 99e20cc99c8634609cfe4f6a9c8c1faf 64 PANTHER PTHR32063 1 55 9.5E-13 T 16-09-2016 BER92_RS10550 99e20cc99c8634609cfe4f6a9c8c1faf 64 Pfam PF00873 AcrB/AcrD/AcrF family 1 49 8.8E-12 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS10550 99e20cc99c8634609cfe4f6a9c8c1faf 64 Gene3D G3DSA:1.10.3850.10 2 50 1.9E-7 T 16-09-2016 BER92_RS10550 99e20cc99c8634609cfe4f6a9c8c1faf 64 SUPERFAMILY SSF82866 2 50 4.71E-7 T 16-09-2016 BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 Gene3D G3DSA:3.40.50.720 11 243 2.0E-44 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 PANTHER PTHR24322 167 198 5.2E-62 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 2.4E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 2.4E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 2.4E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 SUPERFAMILY SSF51735 13 243 6.76E-43 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 Pfam PF00106 short chain dehydrogenase 17 209 1.6E-33 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 PANTHER PTHR24322:SF503 20 151 5.2E-62 T 16-09-2016 BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 PANTHER PTHR24322 20 151 5.2E-62 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS07395 45c5b4126510e594ed333397e1ae7229 247 PANTHER PTHR24322:SF503 167 198 5.2E-62 T 16-09-2016 BER92_RS00570 db49956caaca8a95969514d4a4913066 427 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 1 421 8.5E-200 T 16-09-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 BER92_RS00570 db49956caaca8a95969514d4a4913066 427 Gene3D G3DSA:2.60.120.10 187 212 7.8E-69 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS00570 db49956caaca8a95969514d4a4913066 427 Gene3D G3DSA:2.60.120.10 273 391 7.8E-69 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS00570 db49956caaca8a95969514d4a4913066 427 PANTHER PTHR11056 1 427 3.0E-249 T 16-09-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 BER92_RS00570 db49956caaca8a95969514d4a4913066 427 Pfam PF04209 homogentisate 1,2-dioxygenase 1 421 5.0E-202 T 16-09-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 BER92_RS00570 db49956caaca8a95969514d4a4913066 427 SUPERFAMILY SSF51182 1 424 5.18E-170 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS00570 db49956caaca8a95969514d4a4913066 427 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 1 423 69.312 T 16-09-2016 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 BER92_RS00570 db49956caaca8a95969514d4a4913066 427 PANTHER PTHR11056:SF0 1 427 3.0E-249 T 16-09-2016 BER92_RS15840 a194a00c0ec8b9ba4ce53dde7d46aad6 174 ProSitePatterns PS00934 Glyoxalase I signature 1. 26 47 - T 16-09-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 BER92_RS15840 a194a00c0ec8b9ba4ce53dde7d46aad6 174 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 24 167 6.8E-21 T 16-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BER92_RS15840 a194a00c0ec8b9ba4ce53dde7d46aad6 174 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 17 171 1.3E-42 T 16-09-2016 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 BER92_RS15840 a194a00c0ec8b9ba4ce53dde7d46aad6 174 ProSitePatterns PS00935 Glyoxalase I signature 2. 111 127 - T 16-09-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 BER92_RS15840 a194a00c0ec8b9ba4ce53dde7d46aad6 174 SUPERFAMILY SSF54593 23 172 2.61E-31 T 16-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER92_RS15840 a194a00c0ec8b9ba4ce53dde7d46aad6 174 PANTHER PTHR10374 11 173 7.7E-97 T 16-09-2016 BER92_RS15840 a194a00c0ec8b9ba4ce53dde7d46aad6 174 Gene3D G3DSA:3.10.180.10 15 172 1.4E-56 T 16-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER92_RS15840 a194a00c0ec8b9ba4ce53dde7d46aad6 174 PANTHER PTHR10374:SF16 11 173 7.7E-97 T 16-09-2016 BER92_RS08145 a751d49951eddaba6b9cc58db0e73614 78 PANTHER PTHR36508 7 78 1.0E-25 T 16-09-2016 BER92_RS08145 a751d49951eddaba6b9cc58db0e73614 78 Gene3D G3DSA:1.20.5.300 1 58 5.6E-20 T 16-09-2016 BER92_RS08145 a751d49951eddaba6b9cc58db0e73614 78 Hamap MF_00715 Protein SlyX [slyX]. 11 78 15.628 T 16-09-2016 IPR007236 SlyX BER92_RS08145 a751d49951eddaba6b9cc58db0e73614 78 Pfam PF04102 SlyX 12 78 1.1E-15 T 16-09-2016 IPR007236 SlyX BER92_RS10470 9d1c545de1721eb3808bc1c1c2568df9 130 SUPERFAMILY SSF52172 3 126 2.13E-38 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS10470 9d1c545de1721eb3808bc1c1c2568df9 130 Gene3D G3DSA:3.40.50.2300 2 125 3.7E-40 T 16-09-2016 BER92_RS10470 9d1c545de1721eb3808bc1c1c2568df9 130 Pfam PF00072 Response regulator receiver domain 7 119 5.5E-31 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10470 9d1c545de1721eb3808bc1c1c2568df9 130 PANTHER PTHR26402 5 125 4.9E-43 T 16-09-2016 BER92_RS10470 9d1c545de1721eb3808bc1c1c2568df9 130 SMART SM00448 5 119 6.5E-35 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS08415 e62b6dbb25f68e98c649634c6af28404 111 SUPERFAMILY SSF50475 9 110 6.57E-16 T 16-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 BER92_RS08415 e62b6dbb25f68e98c649634c6af28404 111 PANTHER PTHR35802:SF1 2 111 1.8E-32 T 16-09-2016 BER92_RS08415 e62b6dbb25f68e98c649634c6af28404 111 Pfam PF04299 Putative FMN-binding domain 1 110 1.4E-31 T 16-09-2016 IPR007396 Transcriptional regulator PAI 2-type BER92_RS08415 e62b6dbb25f68e98c649634c6af28404 111 PANTHER PTHR35802 2 111 1.8E-32 T 16-09-2016 BER92_RS08415 e62b6dbb25f68e98c649634c6af28404 111 Gene3D G3DSA:2.30.110.10 1 110 1.1E-31 T 16-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 PANTHER PTHR32063 2 645 3.1E-224 T 16-09-2016 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 PANTHER PTHR32063:SF20 2 645 3.1E-224 T 16-09-2016 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 SUPERFAMILY SSF82866 400 624 9.94E-45 T 16-09-2016 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 SUPERFAMILY SSF82693 168 264 8.89E-8 T 16-09-2016 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 Pfam PF00873 AcrB/AcrD/AcrF family 2 621 9.9E-124 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 Gene3D G3DSA:3.30.70.1430 169 264 1.3E-5 T 16-09-2016 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 Gene3D G3DSA:1.10.3850.10 406 620 6.9E-51 T 16-09-2016 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 Gene3D G3DSA:3.30.2090.10 323 403 8.4E-10 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 SUPERFAMILY SSF82714 323 397 2.09E-8 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 Gene3D G3DSA:1.20.1640.10 2 112 2.7E-27 T 16-09-2016 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 PRINTS PR00702 Acriflavin resistance protein family signature 81 104 2.5E-25 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 PRINTS PR00702 Acriflavin resistance protein family signature 3 27 2.5E-25 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 PRINTS PR00702 Acriflavin resistance protein family signature 154 171 2.5E-25 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 PRINTS PR00702 Acriflavin resistance protein family signature 56 79 2.5E-25 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01870 59a39be24afa5c4877df275758e0bfad 648 SUPERFAMILY SSF82866 2 107 8.24E-24 T 16-09-2016 BER92_RS06860 d14b8a890a539510c36fb2a5e9d1ce13 161 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 7 155 23.472 T 16-09-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 BER92_RS06860 d14b8a890a539510c36fb2a5e9d1ce13 161 PANTHER PTHR22881 14 160 2.5E-54 T 16-09-2016 BER92_RS06860 d14b8a890a539510c36fb2a5e9d1ce13 161 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 43 152 2.9E-36 T 16-09-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 BER92_RS06860 d14b8a890a539510c36fb2a5e9d1ce13 161 SUPERFAMILY SSF55486 22 157 2.34E-44 T 16-09-2016 BER92_RS06860 d14b8a890a539510c36fb2a5e9d1ce13 161 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 121 131 - T 16-09-2016 IPR020549 Endoribonuclease YbeY, conserved site BER92_RS06860 d14b8a890a539510c36fb2a5e9d1ce13 161 Pfam PF02130 Uncharacterized protein family UPF0054 27 150 1.2E-35 T 16-09-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 BER92_RS06860 d14b8a890a539510c36fb2a5e9d1ce13 161 Gene3D G3DSA:3.40.390.30 24 158 4.0E-47 T 16-09-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 ProSitePatterns PS00177 DNA topoisomerase II signature. 432 440 - T 16-09-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 205 218 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 230 252 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 190 205 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 370 384 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 480 489 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 767 779 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 384 404 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 15 25 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 783 799 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR01159 DNA gyrase subunit B signature 322 338 2.6E-73 T 16-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 SUPERFAMILY SSF54211 231 401 1.16E-56 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 Pfam PF01751 Toprim domain 429 534 2.9E-17 T 16-09-2016 IPR006171 Toprim domain BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 Gene3D G3DSA:3.30.230.10 230 402 1.3E-72 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 Gene3D G3DSA:3.30.565.10 15 222 2.1E-84 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 12 814 97.337 T 16-09-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 SMART SM00387 41 185 5.3E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 15 814 1.4E-295 T 16-09-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PANTHER PTHR10169 1 563 5.9E-301 T 16-09-2016 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PANTHER PTHR10169 734 814 5.9E-301 T 16-09-2016 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 742 803 1.1E-29 T 16-09-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 Pfam PF00204 DNA gyrase B 231 400 6.1E-58 T 16-09-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR00418 DNA topoisomerase II family signature 515 532 3.2E-70 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR00418 DNA topoisomerase II family signature 535 547 3.2E-70 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR00418 DNA topoisomerase II family signature 430 444 3.2E-70 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR00418 DNA topoisomerase II family signature 80 93 3.2E-70 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR00418 DNA topoisomerase II family signature 123 137 3.2E-70 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR00418 DNA topoisomerase II family signature 278 291 3.2E-70 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR00418 DNA topoisomerase II family signature 45 60 3.2E-70 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR00418 DNA topoisomerase II family signature 746 762 3.2E-70 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 PRINTS PR00418 DNA topoisomerase II family signature 497 513 3.2E-70 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 SUPERFAMILY SSF55874 15 220 1.37E-67 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 Gene3D G3DSA:3.40.50.670 414 560 7.6E-96 T 16-09-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 Gene3D G3DSA:3.40.50.670 728 796 7.6E-96 T 16-09-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 SUPERFAMILY SSF56719 740 805 2.88E-83 T 16-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 SUPERFAMILY SSF56719 404 570 2.88E-83 T 16-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 SMART SM00433 45 807 2.7E-254 T 16-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 BER92_RS00025 be8182d1eee32e85adffa1c28221829e 814 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 42 181 3.9E-22 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 SUPERFAMILY SSF53067 9 153 3.82E-38 T 16-09-2016 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 Pfam PF06723 MreB/Mbl protein 11 339 1.3E-151 T 16-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 73 96 5.6E-62 T 16-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 5.6E-62 T 16-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 192 212 5.6E-62 T 16-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 53 71 5.6E-62 T 16-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 137 156 5.6E-62 T 16-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 SUPERFAMILY SSF53067 155 340 2.34E-48 T 16-09-2016 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 SMART SM00268 10 345 0.0038 T 16-09-2016 IPR004000 Actin family BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 PANTHER PTHR19375 9 331 4.7E-186 T 16-09-2016 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 Gene3D G3DSA:3.30.420.40 9 164 2.5E-46 T 16-09-2016 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 340 4.9E-161 T 16-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 Gene3D G3DSA:3.90.640.10 192 264 2.0E-30 T 16-09-2016 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 PANTHER PTHR19375:SF117 9 331 4.7E-186 T 16-09-2016 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 Gene3D G3DSA:3.30.420.40 165 191 1.3E-34 T 16-09-2016 BER92_RS02745 0fa4331d8a598fa40e2947768fea18ae 348 Gene3D G3DSA:3.30.420.40 268 322 1.3E-34 T 16-09-2016 BER92_RS03610 d874efb3f734f8458ae75510b0047cad 312 PANTHER PTHR12304:SF4 1 305 1.2E-106 T 16-09-2016 BER92_RS03610 d874efb3f734f8458ae75510b0047cad 312 Gene3D G3DSA:3.90.245.10 4 308 1.4E-89 T 16-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER92_RS03610 d874efb3f734f8458ae75510b0047cad 312 PANTHER PTHR12304 1 305 1.2E-106 T 16-09-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase BER92_RS03610 d874efb3f734f8458ae75510b0047cad 312 SUPERFAMILY SSF53590 5 308 1.09E-84 T 16-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER92_RS03610 d874efb3f734f8458ae75510b0047cad 312 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 6 302 3.5E-63 T 16-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER92_RS04905 bef728ea592d245518a038cd89b77fa9 270 SUPERFAMILY SSF53187 11 255 3.77E-77 T 16-09-2016 BER92_RS04905 bef728ea592d245518a038cd89b77fa9 270 Pfam PF05013 N-formylglutamate amidohydrolase 27 234 5.4E-45 T 16-09-2016 IPR007709 N-formylglutamate amidohydrolase BER92_RS04905 bef728ea592d245518a038cd89b77fa9 270 PIRSF PIRSF029730 5 264 7.3E-103 T 16-09-2016 IPR011227 Uncharacterised conserved protein UCP029730 BER92_RS04905 bef728ea592d245518a038cd89b77fa9 270 Gene3D G3DSA:3.40.630.40 17 255 9.6E-85 T 16-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 BER92_RS11910 122f02794489a51d2d63d2b1d5f05b69 411 Pfam PF05977 Transmembrane secretion effector 19 405 3.1E-31 T 16-09-2016 IPR010290 Transmembrane secretion effector BER92_RS11910 122f02794489a51d2d63d2b1d5f05b69 411 Gene3D G3DSA:1.20.1250.20 227 401 1.3E-12 T 16-09-2016 BER92_RS11910 122f02794489a51d2d63d2b1d5f05b69 411 Gene3D G3DSA:1.20.1250.20 16 201 2.4E-14 T 16-09-2016 BER92_RS11910 122f02794489a51d2d63d2b1d5f05b69 411 PANTHER PTHR23513:SF9 1 411 1.3E-91 T 16-09-2016 BER92_RS11910 122f02794489a51d2d63d2b1d5f05b69 411 SUPERFAMILY SSF103473 16 409 2.75E-35 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS11910 122f02794489a51d2d63d2b1d5f05b69 411 PANTHER PTHR23513 1 411 1.3E-91 T 16-09-2016 BER92_RS01285 fef10a25d52b0e1b70c67c98bed9a36a 284 SUPERFAMILY SSF53098 112 278 3.41E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS01285 fef10a25d52b0e1b70c67c98bed9a36a 284 Pfam PF13276 HTH-like domain 38 91 4.9E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS01285 fef10a25d52b0e1b70c67c98bed9a36a 284 PANTHER PTHR32552 12 282 7.5E-85 T 16-09-2016 BER92_RS01285 fef10a25d52b0e1b70c67c98bed9a36a 284 Pfam PF00665 Integrase core domain 119 233 5.1E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS01285 fef10a25d52b0e1b70c67c98bed9a36a 284 Gene3D G3DSA:3.30.420.10 113 272 4.6E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS05015 e7a56edc5f9b6e555992821b9e6075f0 172 Gene3D G3DSA:3.40.980.10 9 161 7.3E-43 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS05015 e7a56edc5f9b6e555992821b9e6075f0 172 PIRSF PIRSF006443 1 165 1.1E-61 T 16-09-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 UniPathway: UPA00344 BER92_RS05015 e7a56edc5f9b6e555992821b9e6075f0 172 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 6 167 9.5E-82 T 16-09-2016 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 UniPathway: UPA00344 BER92_RS05015 e7a56edc5f9b6e555992821b9e6075f0 172 PANTHER PTHR10192 3 162 1.1E-83 T 16-09-2016 BER92_RS05015 e7a56edc5f9b6e555992821b9e6075f0 172 Pfam PF00994 Probable molybdopterin binding domain 14 154 3.8E-29 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS05015 e7a56edc5f9b6e555992821b9e6075f0 172 PANTHER PTHR10192:SF18 3 162 1.1E-83 T 16-09-2016 BER92_RS05015 e7a56edc5f9b6e555992821b9e6075f0 172 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 10 151 1.3E-30 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS05015 e7a56edc5f9b6e555992821b9e6075f0 172 SMART SM00852 13 157 7.7E-25 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS05015 e7a56edc5f9b6e555992821b9e6075f0 172 SUPERFAMILY SSF53218 7 165 1.57E-41 T 16-09-2016 IPR001453 MoaB/Mog domain BER92_RS12720 cbaa8d44aa9241110dc85f4a77f497a1 291 Pfam PF00348 Polyprenyl synthetase 29 258 7.1E-56 T 16-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 BER92_RS12720 cbaa8d44aa9241110dc85f4a77f497a1 291 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 80 96 - T 16-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 BER92_RS12720 cbaa8d44aa9241110dc85f4a77f497a1 291 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 210 222 - T 16-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 BER92_RS12720 cbaa8d44aa9241110dc85f4a77f497a1 291 Gene3D G3DSA:1.10.600.10 5 268 1.2E-89 T 16-09-2016 IPR008949 Isoprenoid synthase domain BER92_RS12720 cbaa8d44aa9241110dc85f4a77f497a1 291 PANTHER PTHR12001:SF23 3 261 4.2E-103 T 16-09-2016 BER92_RS12720 cbaa8d44aa9241110dc85f4a77f497a1 291 PANTHER PTHR12001 3 261 4.2E-103 T 16-09-2016 IPR017446 Polyprenyl synthetase-related BER92_RS12720 cbaa8d44aa9241110dc85f4a77f497a1 291 SUPERFAMILY SSF48576 6 278 4.16E-84 T 16-09-2016 IPR008949 Isoprenoid synthase domain BER92_RS12230 ff72152e8f53271700bb4f1b2e45ccc3 416 PANTHER PTHR10742:SF275 5 414 4.8E-221 T 16-09-2016 BER92_RS12230 ff72152e8f53271700bb4f1b2e45ccc3 416 Gene3D G3DSA:3.50.50.60 151 152 4.0E-26 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12230 ff72152e8f53271700bb4f1b2e45ccc3 416 Gene3D G3DSA:3.50.50.60 5 96 4.0E-26 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12230 ff72152e8f53271700bb4f1b2e45ccc3 416 Gene3D G3DSA:3.50.50.60 202 287 4.0E-26 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12230 ff72152e8f53271700bb4f1b2e45ccc3 416 PANTHER PTHR10742 5 414 4.8E-221 T 16-09-2016 BER92_RS12230 ff72152e8f53271700bb4f1b2e45ccc3 416 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 77 3.0E-15 T 16-09-2016 BER92_RS12230 ff72152e8f53271700bb4f1b2e45ccc3 416 SUPERFAMILY SSF51905 5 301 2.59E-50 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12230 ff72152e8f53271700bb4f1b2e45ccc3 416 SUPERFAMILY SSF51905 381 411 2.59E-50 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS15920 b0bef523c3d60bd6f9a5be902b3d8d9b 100 SUPERFAMILY SSF81333 12 86 3.27E-17 T 16-09-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 BER92_RS15920 b0bef523c3d60bd6f9a5be902b3d8d9b 100 Pfam PF00137 ATP synthase subunit C 18 80 2.9E-8 T 16-09-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 BER92_RS15920 b0bef523c3d60bd6f9a5be902b3d8d9b 100 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 27 84 7.0E-23 T 16-09-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BER92_RS15920 b0bef523c3d60bd6f9a5be902b3d8d9b 100 ProSitePatterns PS00605 ATP synthase c subunit signature. 47 68 - T 16-09-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site BER92_RS15920 b0bef523c3d60bd6f9a5be902b3d8d9b 100 Hamap MF_01396 ATP synthase subunit c [atpH]. 16 84 14.499 T 16-09-2016 BER92_RS15920 b0bef523c3d60bd6f9a5be902b3d8d9b 100 Gene3D G3DSA:1.20.20.10 11 86 1.2E-30 T 16-09-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 PANTHER PTHR11938:SF101 1 87 1.3E-42 T 16-09-2016 BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 Gene3D G3DSA:3.30.70.20 3 95 1.4E-21 T 16-09-2016 BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 Pfam PF11953 Domain of unknown function (DUF3470) 66 107 1.1E-18 T 16-09-2016 IPR022569 Ferredoxin, C-terminal BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 Pfam PF00037 4Fe-4S binding domain 34 56 3.4E-7 T 16-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 16-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.6E-16 T 16-09-2016 IPR000813 7Fe ferredoxin GO:0009055 BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.6E-16 T 16-09-2016 IPR000813 7Fe ferredoxin GO:0009055 BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.6E-16 T 16-09-2016 IPR000813 7Fe ferredoxin GO:0009055 BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 SUPERFAMILY SSF54862 2 83 1.33E-23 T 16-09-2016 BER92_RS10950 2091880eafdb01ce1846bf919586a942 107 PANTHER PTHR11938 1 87 1.3E-42 T 16-09-2016 BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 Gene3D G3DSA:3.80.10.10 42 163 1.3E-20 T 16-09-2016 IPR032675 Leucine-rich repeat domain, L domain-like BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 SMART SM00369 238 262 170.0 T 16-09-2016 IPR003591 Leucine-rich repeat, typical subtype BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 SMART SM00369 144 167 6.7 T 16-09-2016 IPR003591 Leucine-rich repeat, typical subtype BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 SMART SM00369 51 74 18.0 T 16-09-2016 IPR003591 Leucine-rich repeat, typical subtype BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 SMART SM00369 190 214 4.4 T 16-09-2016 IPR003591 Leucine-rich repeat, typical subtype BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 SMART SM00369 98 121 160.0 T 16-09-2016 IPR003591 Leucine-rich repeat, typical subtype BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 Gene3D G3DSA:3.80.10.10 164 273 2.0E-23 T 16-09-2016 IPR032675 Leucine-rich repeat domain, L domain-like BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 Gene3D G3DSA:3.80.10.10 478 511 2.0E-23 T 16-09-2016 IPR032675 Leucine-rich repeat domain, L domain-like BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 PANTHER PTHR23155 42 261 1.1E-49 T 16-09-2016 BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 Pfam PF13855 Leucine rich repeat 145 201 2.9E-7 T 16-09-2016 IPR001611 Leucine-rich repeat GO:0005515 BER92_RS15380 34423dc560ef1bc9d4bf817eac28af16 602 SUPERFAMILY SSF52058 43 282 2.69E-41 T 16-09-2016 IPR032675 Leucine-rich repeat domain, L domain-like BER92_RS13410 87afbcee03b402abc4b351086ebe10c1 144 PANTHER PTHR33797 1 144 4.2E-58 T 16-09-2016 BER92_RS13410 87afbcee03b402abc4b351086ebe10c1 144 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 5 139 3.9E-56 T 16-09-2016 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 BER92_RS13410 87afbcee03b402abc4b351086ebe10c1 144 Pfam PF02566 OsmC-like protein 42 138 1.0E-20 T 16-09-2016 IPR003718 OsmC/Ohr family BER92_RS13410 87afbcee03b402abc4b351086ebe10c1 144 PANTHER PTHR33797:SF1 1 144 4.2E-58 T 16-09-2016 BER92_RS13410 87afbcee03b402abc4b351086ebe10c1 144 SUPERFAMILY SSF82784 2 133 8.11E-36 T 16-09-2016 IPR003718 OsmC/Ohr family BER92_RS13410 87afbcee03b402abc4b351086ebe10c1 144 Gene3D G3DSA:3.30.300.20 4 141 1.5E-47 T 16-09-2016 IPR015946 K homology domain-like, alpha/beta BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 PANTHER PTHR11615:SF38 16 337 3.0E-172 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 PANTHER PTHR11615:SF38 356 612 3.0E-172 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 SUPERFAMILY SSF54862 89 223 2.01E-36 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 SUPERFAMILY SSF54292 15 87 1.27E-18 T 16-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 96 133 6.5E-16 T 16-09-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 14 89 5.5E-18 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 SUPERFAMILY SSF53706 226 627 6.04E-72 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 17 607 6.9E-204 T 16-09-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 Gene3D G3DSA:3.10.20.30 14 69 1.4E-5 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 Gene3D G3DSA:3.40.50.740 496 629 8.5E-27 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 Gene3D G3DSA:3.40.50.740 287 420 8.5E-27 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 158 168 - T 16-09-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 Gene3D G3DSA:2.40.40.20 674 729 4.5E-10 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 SMART SM00929 96 136 2.5E-19 T 16-09-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 44 61 - T 16-09-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 Pfam PF00384 Molybdopterin oxidoreductase 285 415 1.3E-17 T 16-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 Pfam PF00384 Molybdopterin oxidoreductase 447 608 9.0E-9 T 16-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 Pfam PF01568 Molydopterin dinucleotide binding domain 676 730 6.6E-10 T 16-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 PANTHER PTHR11615 16 337 3.0E-172 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 PANTHER PTHR11615 356 612 3.0E-172 T 16-09-2016 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 111 123 - T 16-09-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 BER92_RS07270 db7b087c0244ca850f81ba305f1d24f4 744 SUPERFAMILY SSF50692 677 735 1.47E-11 T 16-09-2016 IPR009010 Aspartate decarboxylase-like domain BER92_RS10405 a92ef9716ce89498d7d8ef009aa0c410 112 SUPERFAMILY SSF101801 29 110 1.96E-25 T 16-09-2016 IPR001543 Surface presentation of antigen (SpoA) BER92_RS10405 a92ef9716ce89498d7d8ef009aa0c410 112 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 33 102 1.2E-25 T 16-09-2016 IPR001543 Surface presentation of antigen (SpoA) BER92_RS10405 a92ef9716ce89498d7d8ef009aa0c410 112 PRINTS PR00956 Flagellar motor switch protein FliN signature 65 78 2.9E-26 T 16-09-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BER92_RS10405 a92ef9716ce89498d7d8ef009aa0c410 112 PRINTS PR00956 Flagellar motor switch protein FliN signature 32 48 2.9E-26 T 16-09-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BER92_RS10405 a92ef9716ce89498d7d8ef009aa0c410 112 PRINTS PR00956 Flagellar motor switch protein FliN signature 49 65 2.9E-26 T 16-09-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BER92_RS10405 a92ef9716ce89498d7d8ef009aa0c410 112 PRINTS PR00956 Flagellar motor switch protein FliN signature 78 93 2.9E-26 T 16-09-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BER92_RS10405 a92ef9716ce89498d7d8ef009aa0c410 112 Gene3D G3DSA:2.30.330.10 24 112 4.6E-37 T 16-09-2016 BER92_RS10405 a92ef9716ce89498d7d8ef009aa0c410 112 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 29 104 2.4E-34 T 16-09-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 BER92_RS10405 a92ef9716ce89498d7d8ef009aa0c410 112 PANTHER PTHR22617 10 111 3.0E-33 T 16-09-2016 BER92_RS07760 ac4e8d819e553d9f60bc59ebecc7d505 150 Pfam PF05598 Transposase domain (DUF772) 50 124 1.7E-21 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS07760 ac4e8d819e553d9f60bc59ebecc7d505 150 PANTHER PTHR35604 2 149 1.4E-95 T 16-09-2016 BER92_RS07760 ac4e8d819e553d9f60bc59ebecc7d505 150 PANTHER PTHR35604:SF2 2 149 1.4E-95 T 16-09-2016 BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 PANTHER PTHR24031:SF173 6 504 2.5E-285 T 16-09-2016 BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 390 50.693 T 16-09-2016 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 SMART SM00490 271 352 1.0E-31 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 PANTHER PTHR24031 6 504 2.5E-285 T 16-09-2016 BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 Pfam PF00271 Helicase conserved C-terminal domain 245 352 8.7E-28 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 Gene3D G3DSA:3.40.50.300 9 224 8.6E-73 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 164 172 - T 16-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 Gene3D G3DSA:3.40.50.300 225 384 2.5E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 Pfam PF12300 Protein of unknown function (DUF3628) 377 548 5.3E-63 T 16-09-2016 IPR022077 ATP-dependent RNA helicase RhlB GO:0016817 BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 SMART SM00487 28 235 5.9E-56 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 Pfam PF00270 DEAD/DEAH box helicase 33 206 3.8E-46 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS00235 1a21af50ab249ec3f6d57c812694e0cd 570 SUPERFAMILY SSF52540 84 363 4.16E-73 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16680 1857d4d23d193f234f98f0a3534d0ac3 167 Pfam PF00665 Integrase core domain 2 116 7.6E-33 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS16680 1857d4d23d193f234f98f0a3534d0ac3 167 SUPERFAMILY SSF53098 2 161 6.7E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS16680 1857d4d23d193f234f98f0a3534d0ac3 167 Gene3D G3DSA:3.30.420.10 2 155 4.5E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS16680 1857d4d23d193f234f98f0a3534d0ac3 167 PANTHER PTHR32552 1 165 2.4E-56 T 16-09-2016 BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 303 324 3.3E-38 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 209 227 3.3E-38 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 273 288 3.3E-38 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 3.3E-38 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 229 246 3.3E-38 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 PANTHER PTHR30531 4 362 2.5E-145 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 9 354 2.3E-134 T 16-09-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 SUPERFAMILY SSF160544 246 352 8.63E-40 T 16-09-2016 IPR029025 Type III secretion system substrate exporter, C-terminal BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 348 8.3E-121 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 Gene3D G3DSA:3.40.1690.10 219 355 3.2E-60 T 16-09-2016 IPR029025 Type III secretion system substrate exporter, C-terminal BER92_RS10445 03075790ab4579b97b282affbd6c041b 376 PANTHER PTHR30531:SF0 4 362 2.5E-145 T 16-09-2016 BER92_RS09790 8cb301249071f20c14f748d28cf7b5d9 207 Gene3D G3DSA:3.30.420.10 36 195 6.7E-37 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS09790 8cb301249071f20c14f748d28cf7b5d9 207 PANTHER PTHR32552 1 205 6.9E-67 T 16-09-2016 BER92_RS09790 8cb301249071f20c14f748d28cf7b5d9 207 Pfam PF00665 Integrase core domain 42 156 1.7E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS09790 8cb301249071f20c14f748d28cf7b5d9 207 SUPERFAMILY SSF53098 35 201 5.18E-42 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS12215 b13a5e3719f9ef69a138386939933df6 187 Gene3D G3DSA:1.10.10.10 123 186 2.4E-15 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS12215 b13a5e3719f9ef69a138386939933df6 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 185 1.8E-29 T 16-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS12215 b13a5e3719f9ef69a138386939933df6 187 PANTHER PTHR30173 1 187 5.8E-47 T 16-09-2016 BER92_RS12215 b13a5e3719f9ef69a138386939933df6 187 Pfam PF04542 Sigma-70 region 2 30 97 2.7E-16 T 16-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS12215 b13a5e3719f9ef69a138386939933df6 187 SUPERFAMILY SSF88659 114 186 3.18E-13 T 16-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS12215 b13a5e3719f9ef69a138386939933df6 187 PANTHER PTHR30173:SF31 1 187 5.8E-47 T 16-09-2016 BER92_RS12215 b13a5e3719f9ef69a138386939933df6 187 SUPERFAMILY SSF88946 6 105 2.67E-25 T 16-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS12215 b13a5e3719f9ef69a138386939933df6 187 Gene3D G3DSA:1.10.1740.10 7 117 1.1E-25 T 16-09-2016 BER92_RS12215 b13a5e3719f9ef69a138386939933df6 187 Pfam PF08281 Sigma-70, region 4 128 181 1.0E-11 T 16-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS13505 60ec611cf8c5768755bbef1c93a58cdd 420 SUPERFAMILY SSF101960 16 400 1.7E-94 T 16-09-2016 BER92_RS13505 60ec611cf8c5768755bbef1c93a58cdd 420 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 131 400 2.3E-85 T 16-09-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 BER92_RS13505 60ec611cf8c5768755bbef1c93a58cdd 420 PANTHER PTHR30508 15 420 4.1E-122 T 16-09-2016 BER92_RS13505 60ec611cf8c5768755bbef1c93a58cdd 420 PANTHER PTHR30508:SF0 15 420 4.1E-122 T 16-09-2016 BER92_RS13505 60ec611cf8c5768755bbef1c93a58cdd 420 Pfam PF01458 Uncharacterized protein family (UPF0051) 167 390 2.9E-63 T 16-09-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 BER92_RS07015 232e933352fedac6ec0722ebbb63249d 334 PANTHER PTHR30480 1 290 1.8E-107 T 16-09-2016 BER92_RS07015 232e933352fedac6ec0722ebbb63249d 334 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 1 328 44.463 T 16-09-2016 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|UniPathway: UPA00544 BER92_RS07015 232e933352fedac6ec0722ebbb63249d 334 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 3 292 2.6E-78 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS07015 232e933352fedac6ec0722ebbb63249d 334 Gene3D G3DSA:3.20.20.300 1 296 5.0E-87 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS07015 232e933352fedac6ec0722ebbb63249d 334 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 233 250 - T 16-09-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 BER92_RS07015 232e933352fedac6ec0722ebbb63249d 334 SUPERFAMILY SSF51445 1 297 8.74E-78 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS07015 232e933352fedac6ec0722ebbb63249d 334 PANTHER PTHR30480:SF7 1 290 1.8E-107 T 16-09-2016 BER92_RS15290 7a4d83a57d302fe5ee386b03c33f3eb5 102 ProSitePatterns PS00195 Glutaredoxin active site. 18 34 - T 16-09-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 BER92_RS15290 7a4d83a57d302fe5ee386b03c33f3eb5 102 PRINTS PR00160 Glutaredoxin signature 16 34 5.0E-11 T 16-09-2016 IPR014025 Glutaredoxin subgroup BER92_RS15290 7a4d83a57d302fe5ee386b03c33f3eb5 102 PRINTS PR00160 Glutaredoxin signature 58 71 5.0E-11 T 16-09-2016 IPR014025 Glutaredoxin subgroup BER92_RS15290 7a4d83a57d302fe5ee386b03c33f3eb5 102 PRINTS PR00160 Glutaredoxin signature 72 85 5.0E-11 T 16-09-2016 IPR014025 Glutaredoxin subgroup BER92_RS15290 7a4d83a57d302fe5ee386b03c33f3eb5 102 Pfam PF00462 Glutaredoxin 16 75 1.4E-15 T 16-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BER92_RS15290 7a4d83a57d302fe5ee386b03c33f3eb5 102 PANTHER PTHR10168 16 94 4.6E-21 T 16-09-2016 BER92_RS15290 7a4d83a57d302fe5ee386b03c33f3eb5 102 Gene3D G3DSA:3.40.30.10 14 95 5.4E-24 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS15290 7a4d83a57d302fe5ee386b03c33f3eb5 102 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 16 94 9.0E-32 T 16-09-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 BER92_RS15290 7a4d83a57d302fe5ee386b03c33f3eb5 102 SUPERFAMILY SSF52833 9 96 6.59E-26 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS03305 0e283d0b95204612e0e9dd591bb7ac23 357 SMART SM01329 4 353 6.9E-205 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS03305 0e283d0b95204612e0e9dd591bb7ac23 357 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 353 2.1E-136 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS03305 0e283d0b95204612e0e9dd591bb7ac23 357 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 16-09-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 BER92_RS03305 0e283d0b95204612e0e9dd591bb7ac23 357 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 357 52.22 T 16-09-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 BER92_RS03305 0e283d0b95204612e0e9dd591bb7ac23 357 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 9.2E-157 T 16-09-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 BER92_RS03305 0e283d0b95204612e0e9dd591bb7ac23 357 SUPERFAMILY SSF53659 1 357 1.27E-123 T 16-09-2016 BER92_RS03305 0e283d0b95204612e0e9dd591bb7ac23 357 PANTHER PTHR11835:SF35 2 357 1.1E-202 T 16-09-2016 BER92_RS03305 0e283d0b95204612e0e9dd591bb7ac23 357 PANTHER PTHR11835 2 357 1.1E-202 T 16-09-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 BER92_RS03305 0e283d0b95204612e0e9dd591bb7ac23 357 Gene3D G3DSA:3.40.718.10 2 357 5.9E-130 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS06015 b8d6d5d956d17c6e01adab707d82d57d 331 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 21 87 2.5E-21 T 16-09-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BER92_RS06015 b8d6d5d956d17c6e01adab707d82d57d 331 Pfam PF01409 tRNA synthetases class II core domain (F) 92 330 8.0E-105 T 16-09-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 BER92_RS06015 b8d6d5d956d17c6e01adab707d82d57d 331 Gene3D G3DSA:3.30.930.10 10 330 4.7E-127 T 16-09-2016 BER92_RS06015 b8d6d5d956d17c6e01adab707d82d57d 331 SUPERFAMILY SSF55681 92 330 4.07E-78 T 16-09-2016 BER92_RS06015 b8d6d5d956d17c6e01adab707d82d57d 331 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 330 2.5E-101 T 16-09-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BER92_RS06015 b8d6d5d956d17c6e01adab707d82d57d 331 SUPERFAMILY SSF46589 12 99 2.88E-19 T 16-09-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 BER92_RS06015 b8d6d5d956d17c6e01adab707d82d57d 331 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 330 48.299 T 16-09-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 BER92_RS06015 b8d6d5d956d17c6e01adab707d82d57d 331 PANTHER PTHR11538 90 330 1.6E-103 T 16-09-2016 BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 SUPERFAMILY SSF52540 254 485 5.47E-42 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 PANTHER PTHR22942:SF38 11 242 1.1E-69 T 16-09-2016 BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 PIRSF PIRSF039117 2 495 2.5E-119 T 16-09-2016 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 Gene3D G3DSA:3.40.50.300 9 244 1.8E-72 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 Gene3D G3DSA:3.40.50.300 246 489 2.4E-75 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 SUPERFAMILY SSF52540 10 243 8.56E-36 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 Pfam PF06745 KaiC 13 240 1.7E-35 T 16-09-2016 IPR014774 KaiC-like domain BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 Pfam PF06745 KaiC 255 475 5.7E-30 T 16-09-2016 IPR014774 KaiC-like domain BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 PANTHER PTHR22942 11 242 1.1E-69 T 16-09-2016 BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 SMART SM00382 272 437 0.35 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS08605 9d5d7d68ee9008778cbc8d0388d4df95 504 SMART SM00382 29 217 0.069 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 Gene3D G3DSA:1.10.10.10 3 145 1.1E-28 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 SUPERFAMILY SSF46785 3 145 6.53E-27 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 SMART SM00347 29 130 1.0E-15 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 PANTHER PTHR33164 11 145 1.3E-33 T 16-09-2016 BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 Pfam PF01047 MarR family 41 94 6.5E-11 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 ProSitePatterns PS01117 MarR-type HTH domain signature. 69 103 - T 16-09-2016 IPR023187 Transcriptional regulator MarR-type, conserved site BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 PANTHER PTHR33164:SF16 11 145 1.3E-33 T 16-09-2016 BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 4.2E-10 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 120 140 4.2E-10 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06540 a13643135766f12ad2fa94b542abab80 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 4.2E-10 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 Pfam PF12729 Four helix bundle sensory module for signal transduction 9 183 1.3E-19 T 16-09-2016 IPR024478 4HB MCP domain BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 PANTHER PTHR32089:SF63 162 248 2.0E-162 T 16-09-2016 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 PANTHER PTHR32089:SF63 430 698 2.0E-162 T 16-09-2016 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 Pfam PF00672 HAMP domain 195 262 8.8E-14 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 SMART SM00283 448 695 2.5E-90 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 500 694 9.8E-62 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 469 498 1.6E-58 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 623 652 1.6E-58 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 575 604 1.6E-58 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 546 573 1.6E-58 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 SUPERFAMILY SSF158472 214 265 6.02E-10 T 16-09-2016 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 PANTHER PTHR32089 162 248 2.0E-162 T 16-09-2016 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 PANTHER PTHR32089 430 698 2.0E-162 T 16-09-2016 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 SUPERFAMILY SSF58104 415 700 8.76E-72 T 16-09-2016 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 SMART SM00304 214 266 5.2E-9 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 SMART SM00304 395 447 14.0 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09510 98725cd1b4908d02845f40de0dfc128b 749 Gene3D G3DSA:1.10.287.950 463 667 3.7E-62 T 16-09-2016 BER92_RS02450 146d7fecaf936ec688ee2647c68f716e 255 Gene3D G3DSA:3.60.10.10 10 185 1.2E-6 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS02450 146d7fecaf936ec688ee2647c68f716e 255 SUPERFAMILY SSF56219 5 251 5.37E-32 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS02450 146d7fecaf936ec688ee2647c68f716e 255 PANTHER PTHR14859 3 26 1.2E-45 T 16-09-2016 IPR027317 PGAP2-interacting protein BER92_RS02450 146d7fecaf936ec688ee2647c68f716e 255 PANTHER PTHR14859 45 250 1.2E-45 T 16-09-2016 IPR027317 PGAP2-interacting protein BER92_RS02450 146d7fecaf936ec688ee2647c68f716e 255 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 12 240 1.0E-18 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS13355 e545e5f814aeb7c288aa1fa22f579e02 171 PANTHER PTHR10302 1 171 1.4E-51 T 16-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 BER92_RS13355 e545e5f814aeb7c288aa1fa22f579e02 171 Pfam PF00436 Single-strand binding protein family 5 108 2.6E-39 T 16-09-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 BER92_RS13355 e545e5f814aeb7c288aa1fa22f579e02 171 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 171 8.2E-50 T 16-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 BER92_RS13355 e545e5f814aeb7c288aa1fa22f579e02 171 Hamap MF_00984 Single-stranded DNA-binding protein. 5 112 35.946 T 16-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 BER92_RS13355 e545e5f814aeb7c288aa1fa22f579e02 171 SUPERFAMILY SSF50249 3 171 2.43E-58 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS13355 e545e5f814aeb7c288aa1fa22f579e02 171 Gene3D G3DSA:2.40.50.140 1 171 6.6E-51 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 132 259 9.5E-39 T 16-09-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 Gene3D G3DSA:2.60.40.420 124 276 5.9E-55 T 16-09-2016 IPR008972 Cupredoxin BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 PANTHER PTHR22888:SF2 1 300 5.3E-123 T 16-09-2016 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 SUPERFAMILY SSF81464 36 126 9.65E-23 T 16-09-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 PRINTS PR01166 Cytochrome c oxidase subunit II signature 204 224 2.8E-41 T 16-09-2016 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 PRINTS PR01166 Cytochrome c oxidase subunit II signature 224 241 2.8E-41 T 16-09-2016 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 PRINTS PR01166 Cytochrome c oxidase subunit II signature 128 147 2.8E-41 T 16-09-2016 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 PRINTS PR01166 Cytochrome c oxidase subunit II signature 180 201 2.8E-41 T 16-09-2016 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 PRINTS PR01166 Cytochrome c oxidase subunit II signature 242 259 2.8E-41 T 16-09-2016 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 PRINTS PR01166 Cytochrome c oxidase subunit II signature 94 106 2.8E-41 T 16-09-2016 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 PRINTS PR01166 Cytochrome c oxidase subunit II signature 106 126 2.8E-41 T 16-09-2016 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 36 116 1.8E-12 T 16-09-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 205 253 - T 16-09-2016 IPR001505 Copper centre Cu(A) GO:0005507 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 SUPERFAMILY SSF49503 129 273 4.49E-52 T 16-09-2016 IPR008972 Cupredoxin BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 49 269 1.5E-59 T 16-09-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 PANTHER PTHR22888 1 300 5.3E-123 T 16-09-2016 BER92_RS18300 ad38fa021d9325a4a847660b9e472a45 302 Gene3D G3DSA:1.10.287.90 35 123 1.5E-22 T 16-09-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 SUPERFAMILY SSF51726 4 393 2.22E-113 T 16-09-2016 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 432 753 5.7E-154 T 16-09-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 PANTHER PTHR30519:SF0 1 763 0.0 T 16-09-2016 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 PIRSF PIRSF000382 1 763 0.0 T 16-09-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 SUPERFAMILY SSF51726 396 756 1.23E-121 T 16-09-2016 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 PANTHER PTHR30519 1 763 0.0 T 16-09-2016 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 758 37.173 T 16-09-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 Gene3D G3DSA:3.20.20.210 392 760 1.4E-132 T 16-09-2016 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 309 3.4E-118 T 16-09-2016 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 Gene3D G3DSA:3.20.20.210 5 390 2.5E-151 T 16-09-2016 BER92_RS16410 8dbd285899d4c76797047400ca191537 763 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 757 0.0 T 16-09-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 Gene3D G3DSA:3.40.430.10 1 163 3.4E-48 T 16-09-2016 IPR024072 Dihydrofolate reductase-like domain BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 PANTHER PTHR22778 1 164 6.8E-35 T 16-09-2016 BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 SUPERFAMILY SSF53597 1 164 1.81E-48 T 16-09-2016 IPR024072 Dihydrofolate reductase-like domain BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 16-09-2016 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 Pfam PF00186 Dihydrofolate reductase 2 163 1.5E-49 T 16-09-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 PRINTS PR00070 Dihydrofolate reductase signature 41 52 4.9E-12 T 16-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 PRINTS PR00070 Dihydrofolate reductase signature 94 108 4.9E-12 T 16-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 PRINTS PR00070 Dihydrofolate reductase signature 14 24 4.9E-12 T 16-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 PRINTS PR00070 Dihydrofolate reductase signature 28 36 4.9E-12 T 16-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 PANTHER PTHR22778:SF16 1 164 6.8E-35 T 16-09-2016 BER92_RS04720 1cae7b32d540b4dcfe9268b215d72c72 164 PIRSF PIRSF000194 1 164 2.2E-53 T 16-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 BER92_RS11040 fa7af0fcae5381186043d3a33a4ac95d 162 Hamap MF_01114 Regulatory protein RecX [recX]. 11 162 14.052 T 16-09-2016 IPR003783 Regulatory protein RecX GO:0006282 BER92_RS11040 fa7af0fcae5381186043d3a33a4ac95d 162 Pfam PF02631 RecX family 42 156 1.7E-25 T 16-09-2016 IPR003783 Regulatory protein RecX GO:0006282 BER92_RS11040 fa7af0fcae5381186043d3a33a4ac95d 162 PANTHER PTHR33602:SF1 3 162 2.6E-40 T 16-09-2016 BER92_RS11040 fa7af0fcae5381186043d3a33a4ac95d 162 Gene3D G3DSA:1.10.10.10 65 109 3.6E-18 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS11040 fa7af0fcae5381186043d3a33a4ac95d 162 Gene3D G3DSA:1.10.10.10 18 64 3.9E-19 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS11040 fa7af0fcae5381186043d3a33a4ac95d 162 PANTHER PTHR33602 3 162 2.6E-40 T 16-09-2016 BER92_RS11040 fa7af0fcae5381186043d3a33a4ac95d 162 Gene3D G3DSA:1.10.10.10 111 162 3.9E-20 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 Gene3D G3DSA:1.10.340.30 28 129 4.2E-43 T 16-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 13 286 2.0E-99 T 16-09-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 Gene3D G3DSA:3.90.79.10 240 357 4.8E-23 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 SMART SM00478 46 200 1.9E-42 T 16-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 Gene3D G3DSA:1.10.1670.10 130 233 6.3E-34 T 16-09-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 SUPERFAMILY SSF55811 230 357 6.72E-26 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 Pfam PF00633 Helix-hairpin-helix motif 107 134 3.6E-7 T 16-09-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 202 218 - T 16-09-2016 IPR004035 Endonuclease III, iron-sulphur binding site BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 SUPERFAMILY SSF48150 11 233 3.3E-71 T 16-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 PANTHER PTHR10359 15 315 5.4E-90 T 16-09-2016 BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 Pfam PF14815 NUDIX domain 245 356 3.1E-20 T 16-09-2016 IPR029119 MutY, C-terminal BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 ProSitePatterns PS01155 Endonuclease III family signature. 109 138 - T 16-09-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 BER92_RS06185 2df333d81be881cae3ea1738b5a99abb 357 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 43 174 7.5E-19 T 16-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 BER92_RS17850 467e4f43913c3038d7281abdfc160149 550 Gene3D G3DSA:2.30.38.10 347 437 1.5E-14 T 16-09-2016 BER92_RS17850 467e4f43913c3038d7281abdfc160149 550 PANTHER PTHR24095:SF123 7 474 4.2E-75 T 16-09-2016 BER92_RS17850 467e4f43913c3038d7281abdfc160149 550 Gene3D G3DSA:3.40.50.980 10 182 2.4E-34 T 16-09-2016 BER92_RS17850 467e4f43913c3038d7281abdfc160149 550 SUPERFAMILY SSF56801 8 544 6.41E-90 T 16-09-2016 BER92_RS17850 467e4f43913c3038d7281abdfc160149 550 Pfam PF00501 AMP-binding enzyme 15 445 9.1E-64 T 16-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 BER92_RS17850 467e4f43913c3038d7281abdfc160149 550 Gene3D G3DSA:3.30.300.30 452 541 6.5E-5 T 16-09-2016 BER92_RS17850 467e4f43913c3038d7281abdfc160149 550 ProSitePatterns PS00455 Putative AMP-binding domain signature. 178 189 - T 16-09-2016 IPR020845 AMP-binding, conserved site BER92_RS17850 467e4f43913c3038d7281abdfc160149 550 Gene3D G3DSA:3.40.50.980 183 329 1.7E-23 T 16-09-2016 BER92_RS17850 467e4f43913c3038d7281abdfc160149 550 PANTHER PTHR24095 7 474 4.2E-75 T 16-09-2016 BER92_RS10185 7b197da18baf38179c783856c6d39450 204 PANTHER PTHR38100 2 204 3.7E-87 T 16-09-2016 BER92_RS10185 7b197da18baf38179c783856c6d39450 204 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 25 195 1.0E-82 T 16-09-2016 IPR007451 Uncharacterised protein family UPF0274 BER92_RS10185 7b197da18baf38179c783856c6d39450 204 Pfam PF04356 Protein of unknown function (DUF489) 8 196 7.3E-60 T 16-09-2016 IPR007451 Uncharacterised protein family UPF0274 BER92_RS10185 7b197da18baf38179c783856c6d39450 204 SUPERFAMILY SSF101322 1 203 1.96E-61 T 16-09-2016 IPR007451 Uncharacterised protein family UPF0274 BER92_RS10185 7b197da18baf38179c783856c6d39450 204 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 204 30.443 T 16-09-2016 IPR007451 Uncharacterised protein family UPF0274 BER92_RS10185 7b197da18baf38179c783856c6d39450 204 Gene3D G3DSA:1.10.3890.10 1 203 1.8E-64 T 16-09-2016 IPR007451 Uncharacterised protein family UPF0274 BER92_RS10185 7b197da18baf38179c783856c6d39450 204 PANTHER PTHR38100:SF1 2 204 3.7E-87 T 16-09-2016 BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 291 1.3E-32 T 16-09-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 16-09-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 Gene3D G3DSA:1.10.1040.10 164 294 4.9E-42 T 16-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 3.1E-50 T 16-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 291 4.1E-120 T 16-09-2016 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|UniPathway: UPA00362 BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 SUPERFAMILY SSF48179 164 293 1.81E-38 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 Gene3D G3DSA:3.40.50.720 2 163 2.5E-58 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 PIRSF PIRSF000103 1 295 2.8E-79 T 16-09-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 SUPERFAMILY SSF51735 1 162 6.08E-47 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06780 6047ffb81341680af75f17e82271c9fc 295 PANTHER PTHR22981 1 292 4.6E-115 T 16-09-2016 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PIRSF PIRSF000724 1 391 2.3E-131 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PRINTS PR00477 Phosphoglycerate kinase family signature 308 333 2.3E-81 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PRINTS PR00477 Phosphoglycerate kinase family signature 341 352 2.3E-81 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.3E-81 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 2.3E-81 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PRINTS PR00477 Phosphoglycerate kinase family signature 364 381 2.3E-81 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 2.3E-81 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.3E-81 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 2.3E-81 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 2.3E-81 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 SUPERFAMILY SSF53748 3 387 2.71E-144 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 PANTHER PTHR11406 1 391 1.2E-198 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 Gene3D G3DSA:3.40.50.1260 5 174 2.3E-61 T 16-09-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 16-09-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 Pfam PF00162 Phosphoglycerate kinase 6 378 1.2E-138 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 388 38.188 T 16-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS16795 81636a88a91923db10f4b827e7776c39 391 Gene3D G3DSA:3.40.50.1270 175 376 4.9E-84 T 16-09-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 PANTHER PTHR11451 6 234 1.9E-94 T 16-09-2016 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 Gene3D G3DSA:3.90.800.10 72 167 2.5E-11 T 16-09-2016 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 Gene3D G3DSA:3.40.50.620 170 219 8.7E-41 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 Gene3D G3DSA:3.40.50.620 6 71 8.7E-41 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 7 109 2.1E-24 T 16-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 126 233 8.1E-22 T 16-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 6 267 1.2E-100 T 16-09-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 4.0E-13 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 4.0E-13 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 184 192 4.0E-13 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 4.0E-13 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 168 178 4.0E-13 T 16-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 SUPERFAMILY SSF52374 6 283 1.56E-78 T 16-09-2016 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 PANTHER PTHR11451:SF35 6 234 1.9E-94 T 16-09-2016 BER92_RS12085 671f688483af50a2f1e3fd246f8d9600 296 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 6 288 40.378 T 16-09-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 BER92_RS04180 8897430513a4d0468dd4c77576083727 678 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 435 464 1.4E-18 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS04180 8897430513a4d0468dd4c77576083727 678 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 541 570 1.4E-18 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS04180 8897430513a4d0468dd4c77576083727 678 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 512 539 1.4E-18 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS04180 8897430513a4d0468dd4c77576083727 678 SMART SM00283 414 675 3.9E-87 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS04180 8897430513a4d0468dd4c77576083727 678 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 472 674 3.4E-48 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS04180 8897430513a4d0468dd4c77576083727 678 SUPERFAMILY SSF58104 376 676 1.57E-68 T 16-09-2016 BER92_RS04180 8897430513a4d0468dd4c77576083727 678 PANTHER PTHR32089 351 678 5.3E-138 T 16-09-2016 BER92_RS04180 8897430513a4d0468dd4c77576083727 678 Gene3D G3DSA:1.10.287.950 428 646 2.4E-52 T 16-09-2016 BER92_RS04180 8897430513a4d0468dd4c77576083727 678 PANTHER PTHR32089:SF43 351 678 5.3E-138 T 16-09-2016 BER92_RS16255 f4f94d3abe633b44185cff5e62684ac1 148 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 16-09-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 BER92_RS16255 f4f94d3abe633b44185cff5e62684ac1 148 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 2.2E-54 T 16-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 BER92_RS16255 f4f94d3abe633b44185cff5e62684ac1 148 SUPERFAMILY SSF52304 3 146 7.06E-59 T 16-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 BER92_RS16255 f4f94d3abe633b44185cff5e62684ac1 148 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 148 71.67 T 16-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 BER92_RS16255 f4f94d3abe633b44185cff5e62684ac1 148 PANTHER PTHR21272 1 148 3.8E-85 T 16-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 BER92_RS16255 f4f94d3abe633b44185cff5e62684ac1 148 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 18 142 4.0E-64 T 16-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 BER92_RS16255 f4f94d3abe633b44185cff5e62684ac1 148 PIRSF PIRSF001399 1 147 6.7E-56 T 16-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 BER92_RS16255 f4f94d3abe633b44185cff5e62684ac1 148 Pfam PF01220 Dehydroquinase class II 4 140 7.7E-56 T 16-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 BER92_RS16255 f4f94d3abe633b44185cff5e62684ac1 148 Gene3D G3DSA:3.40.50.9100 3 146 3.1E-63 T 16-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 BER92_RS00565 0e46c6f0f69fe4a534fb5b7308cc4757 371 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 29 371 5.7E-115 T 16-09-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 BER92_RS00565 0e46c6f0f69fe4a534fb5b7308cc4757 371 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 179 289 4.5E-17 T 16-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BER92_RS00565 0e46c6f0f69fe4a534fb5b7308cc4757 371 PANTHER PTHR11959 23 371 1.0E-131 T 16-09-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 BER92_RS00565 0e46c6f0f69fe4a534fb5b7308cc4757 371 Gene3D G3DSA:3.10.180.10 175 371 1.7E-67 T 16-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER92_RS00565 0e46c6f0f69fe4a534fb5b7308cc4757 371 PIRSF PIRSF009283 12 371 2.6E-126 T 16-09-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 BER92_RS00565 0e46c6f0f69fe4a534fb5b7308cc4757 371 PANTHER PTHR11959:SF1 23 371 1.0E-131 T 16-09-2016 BER92_RS00565 0e46c6f0f69fe4a534fb5b7308cc4757 371 SUPERFAMILY SSF54593 16 358 1.65E-72 T 16-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER92_RS00565 0e46c6f0f69fe4a534fb5b7308cc4757 371 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 21 162 3.4E-59 T 16-09-2016 BER92_RS00565 0e46c6f0f69fe4a534fb5b7308cc4757 371 Gene3D G3DSA:3.10.180.10 20 166 5.3E-35 T 16-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 274 311 - T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 PANTHER PTHR11986 7 467 3.0E-204 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 31 465 1.6E-165 T 16-09-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 SUPERFAMILY SSF53383 26 466 3.21E-122 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 PIRSF PIRSF000521 41 438 9.9E-28 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 Pfam PF00202 Aminotransferase class-III 45 465 1.3E-116 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 Gene3D G3DSA:3.40.640.10 83 362 9.0E-94 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 Gene3D G3DSA:3.90.1150.10 365 467 1.3E-47 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 Gene3D G3DSA:3.90.1150.10 21 82 1.3E-47 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS05675 b48ab1ad17eddc990e41217fb0e5db8b 472 PANTHER PTHR11986:SF8 7 467 3.0E-204 T 16-09-2016 BER92_RS08215 772773be12e30284f3fb55780de833f9 249 SUPERFAMILY SSF55315 2 76 3.88E-14 T 16-09-2016 IPR029064 50S ribosomal protein L30e-like BER92_RS08215 772773be12e30284f3fb55780de833f9 249 SMART SM00967 7 83 4.5E-11 T 16-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 BER92_RS08215 772773be12e30284f3fb55780de833f9 249 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 6 246 5.2E-72 T 16-09-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 BER92_RS08215 772773be12e30284f3fb55780de833f9 249 SUPERFAMILY SSF75217 72 247 3.73E-48 T 16-09-2016 IPR029028 Alpha/beta knot methyltransferases BER92_RS08215 772773be12e30284f3fb55780de833f9 249 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 5 247 39.857 T 16-09-2016 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB BER92_RS08215 772773be12e30284f3fb55780de833f9 249 Gene3D G3DSA:3.30.1330.30 2 77 7.2E-17 T 16-09-2016 IPR029064 50S ribosomal protein L30e-like BER92_RS08215 772773be12e30284f3fb55780de833f9 249 PANTHER PTHR12029 7 247 1.1E-73 T 16-09-2016 BER92_RS08215 772773be12e30284f3fb55780de833f9 249 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 7 81 5.0E-13 T 16-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 BER92_RS08215 772773be12e30284f3fb55780de833f9 249 Gene3D G3DSA:3.40.1280.10 95 247 5.0E-55 T 16-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER92_RS08215 772773be12e30284f3fb55780de833f9 249 Pfam PF00588 SpoU rRNA Methylase family 100 239 7.2E-40 T 16-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PANTHER PTHR11482 431 588 1.9E-250 T 16-09-2016 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 SUPERFAMILY SSF51419 64 341 2.24E-61 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 270 286 - T 16-09-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PANTHER PTHR11482:SF36 1 363 1.9E-250 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PANTHER PTHR11482:SF36 431 588 1.9E-250 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 Gene3D G3DSA:2.40.37.10 447 574 1.1E-14 T 16-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 Gene3D G3DSA:2.40.37.10 328 352 1.1E-14 T 16-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 SUPERFAMILY SSF50621 446 564 6.07E-7 T 16-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PANTHER PTHR11482 1 363 1.9E-250 T 16-09-2016 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 80 340 3.1E-46 T 16-09-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 427 553 5.0E-24 T 16-09-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PIRSF PIRSF001336 1 625 1.6E-239 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 2 624 42.532 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 329 348 1.2E-15 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 96 114 1.2E-15 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 534 547 1.2E-15 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 119 131 1.2E-15 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 235 248 1.2E-15 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 TIGRFAM TIGR01273 speA: arginine decarboxylase 4 623 1.2E-261 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 Gene3D G3DSA:3.20.20.10 66 327 3.9E-53 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01180 Arginine decarboxylase signature 64 79 1.2E-66 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01180 Arginine decarboxylase signature 534 555 1.2E-66 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01180 Arginine decarboxylase signature 88 102 1.2E-66 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01180 Arginine decarboxylase signature 456 477 1.2E-66 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01180 Arginine decarboxylase signature 142 157 1.2E-66 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01180 Arginine decarboxylase signature 168 189 1.2E-66 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01180 Arginine decarboxylase signature 192 214 1.2E-66 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01180 Arginine decarboxylase signature 319 336 1.2E-66 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01620 888f392834016c7f42cfd78961badd0f 628 PRINTS PR01180 Arginine decarboxylase signature 481 506 1.2E-66 T 16-09-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 Pfam PF13454 FAD-NAD(P)-binding 13 164 1.3E-34 T 16-09-2016 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 PANTHER PTHR40254:SF1 1 462 2.2E-112 T 16-09-2016 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 199 217 2.0E-6 T 16-09-2016 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 2.0E-6 T 16-09-2016 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 2.0E-6 T 16-09-2016 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 Gene3D G3DSA:3.50.50.60 196 231 4.3E-4 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 Gene3D G3DSA:3.50.50.60 329 416 4.3E-4 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 Gene3D G3DSA:3.50.50.60 265 266 4.3E-4 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 Gene3D G3DSA:3.50.50.60 417 461 1.3E-11 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 Gene3D G3DSA:3.50.50.60 96 187 1.3E-11 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 Gene3D G3DSA:3.50.50.60 12 56 1.3E-11 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 PANTHER PTHR40254 1 462 2.2E-112 T 16-09-2016 BER92_RS01225 35d9cff32fc01f823fcae5cc001d6d84 463 SUPERFAMILY SSF51905 12 250 2.46E-20 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS08690 ae683f1825ab0a905ad3632b5f6daa4d 333 SUPERFAMILY SSF51679 4 322 1.31E-80 T 16-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BER92_RS08690 ae683f1825ab0a905ad3632b5f6daa4d 333 PANTHER PTHR30137:SF2 1 328 8.2E-147 T 16-09-2016 BER92_RS08690 ae683f1825ab0a905ad3632b5f6daa4d 333 Pfam PF00296 Luciferase-like monooxygenase 18 294 8.7E-34 T 16-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BER92_RS08690 ae683f1825ab0a905ad3632b5f6daa4d 333 Gene3D G3DSA:3.20.20.30 3 322 1.2E-86 T 16-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BER92_RS08690 ae683f1825ab0a905ad3632b5f6daa4d 333 PANTHER PTHR30137 1 328 8.2E-147 T 16-09-2016 BER92_RS08690 ae683f1825ab0a905ad3632b5f6daa4d 333 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 323 3.8E-134 T 16-09-2016 IPR019949 Luciferase family oxidoreductase, group 1 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 Gene3D G3DSA:3.40.50.720 150 275 9.8E-46 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 271 279 - T 16-09-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 Hamap MF_01576 Bifunctional protein FolD [folD]. 12 294 36.441 T 16-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 SUPERFAMILY SSF53223 12 131 4.8E-36 T 16-09-2016 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 Gene3D G3DSA:3.40.192.10 16 149 3.9E-44 T 16-09-2016 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 133 291 2.3E-63 T 16-09-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 SUPERFAMILY SSF51735 132 290 4.57E-45 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 PANTHER PTHR10025 4 290 6.2E-153 T 16-09-2016 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 14 130 5.7E-34 T 16-09-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 267 285 1.0E-80 T 16-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 215 244 1.0E-80 T 16-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 43 65 1.0E-80 T 16-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 164 184 1.0E-80 T 16-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 250 266 1.0E-80 T 16-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 84 111 1.0E-80 T 16-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS09080 8878ac9a22c9fce7276b5fabfc73d3c1 294 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 119 140 1.0E-80 T 16-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 PANTHER PTHR11592 1 181 3.2E-70 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 Pfam PF00255 Glutathione peroxidase 5 111 1.3E-36 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 PANTHER PTHR11592:SF40 1 181 3.2E-70 T 16-09-2016 BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 16-09-2016 IPR029759 Glutathione peroxidase active site BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 PIRSF PIRSF000303 1 181 9.5E-60 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 SUPERFAMILY SSF52833 3 179 9.74E-55 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 Gene3D G3DSA:3.40.30.10 4 180 3.9E-62 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 PRINTS PR01011 Glutathione peroxidase family signature 58 74 5.3E-18 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 PRINTS PR01011 Glutathione peroxidase family signature 141 150 5.3E-18 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS19235 e5ae320eb61a67055d0c693b901b4b39 181 PRINTS PR01011 Glutathione peroxidase family signature 23 40 5.3E-18 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 SUPERFAMILY SSF52540 365 678 4.15E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 Gene3D G3DSA:3.40.50.300 367 673 3.1E-92 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 SUPERFAMILY SSF46785 717 782 9.33E-22 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 30 203 1.2E-39 T 16-09-2016 IPR025199 DNA translocase FtsK, 4TM region BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 SMART SM00843 717 782 2.4E-39 T 16-09-2016 IPR018541 FtsK gamma domain BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 PANTHER PTHR22683:SF41 219 781 1.9E-270 T 16-09-2016 BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 Pfam PF09397 Ftsk gamma domain 719 779 6.7E-27 T 16-09-2016 IPR018541 FtsK gamma domain BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 PANTHER PTHR22683 219 781 1.9E-270 T 16-09-2016 BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 Pfam PF01580 FtsK/SpoIIIE family 393 606 1.2E-64 T 16-09-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 BER92_RS10140 29c2342b360546bbbd1be10b1ace2aa1 784 SMART SM00382 428 627 0.0047 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS07285 a0f2283028653ed985011ffd99dbc4d2 219 PANTHER PTHR33269:SF1 1 198 3.4E-72 T 16-09-2016 BER92_RS07285 a0f2283028653ed985011ffd99dbc4d2 219 PANTHER PTHR33269 1 198 3.4E-72 T 16-09-2016 BER92_RS07285 a0f2283028653ed985011ffd99dbc4d2 219 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 20 167 3.2E-35 T 16-09-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 1.9E-132 T 16-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 16-09-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 PANTHER PTHR21085 2 352 2.1E-199 T 16-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 Gene3D G3DSA:3.60.150.10 9 352 7.1E-147 T 16-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 16-09-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 16-09-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 Hamap MF_00300 Chorismate synthase [aroC]. 10 354 34.752 T 16-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 Pfam PF01264 Chorismate synthase 10 345 2.1E-130 T 16-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 SUPERFAMILY SSF103263 4 351 2.35E-139 T 16-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS08580 d0c7259c9e586810718279425734ac99 367 PIRSF PIRSF001456 3 361 3.0E-130 T 16-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 PANTHER PTHR11079 101 328 1.4E-130 T 16-09-2016 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 Pfam PF01479 S4 domain 28 74 9.1E-9 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 Pfam PF00849 RNA pseudouridylate synthase 109 262 2.0E-25 T 16-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 Gene3D G3DSA:3.10.290.10 28 76 6.6E-7 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 SUPERFAMILY SSF55174 27 78 7.74E-9 T 16-09-2016 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 24 326 5.5E-74 T 16-09-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 PANTHER PTHR11079:SF84 9 84 1.4E-130 T 16-09-2016 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 SUPERFAMILY SSF55120 98 325 1.54E-55 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 PANTHER PTHR11079:SF84 101 328 1.4E-130 T 16-09-2016 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 SMART SM00363 28 89 1.2E-5 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 146 160 - T 16-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS09720 f01d206699407f871a79b5ae6a9680ab 328 PANTHER PTHR11079 9 84 1.4E-130 T 16-09-2016 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 SUPERFAMILY SSF49785 469 598 8.84E-22 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 SUPERFAMILY SSF51445 32 354 1.35E-93 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 Gene3D G3DSA:3.20.20.80 34 356 4.6E-112 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PIRSF PIRSF006336 2 607 1.2E-180 T 16-09-2016 IPR026283 Beta-galactosidase 1-like GO:0004565 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PANTHER PTHR23421 1 597 6.0E-232 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PANTHER PTHR23421:SF13 1 597 6.0E-232 T 16-09-2016 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 Gene3D G3DSA:2.60.120.260 472 598 1.8E-19 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 SUPERFAMILY SSF49785 382 480 7.65E-5 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 Pfam PF01301 Glycosyl hydrolases family 35 38 355 2.7E-118 T 16-09-2016 IPR031330 Glycoside hydrolase 35, catalytic domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 ProSitePatterns PS01182 Glycosyl hydrolases family 35 putative active site. 175 187 - T 16-09-2016 IPR019801 Glycoside hydrolase, family 35, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 325 341 8.1E-47 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 63 81 8.1E-47 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 551 567 8.1E-47 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 173 188 8.1E-47 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 259 274 8.1E-47 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 42 59 8.1E-47 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS15410 471ad501b8f83b6ca05e197a59a2e541 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 118 137 8.1E-47 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS06590 a0696f2011c388bbe30924f16d45e827 100 PANTHER PTHR31435:SF3 2 100 1.0E-36 T 16-09-2016 BER92_RS06590 a0696f2011c388bbe30924f16d45e827 100 Gene3D G3DSA:3.40.630.30 12 100 7.1E-33 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS06590 a0696f2011c388bbe30924f16d45e827 100 PANTHER PTHR31435 2 100 1.0E-36 T 16-09-2016 BER92_RS06590 a0696f2011c388bbe30924f16d45e827 100 SUPERFAMILY SSF55729 13 99 1.04E-26 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS06590 a0696f2011c388bbe30924f16d45e827 100 Pfam PF14542 GCN5-related N-acetyl-transferase 23 98 9.1E-27 T 16-09-2016 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase BER92_RS17090 7679e5366b2718878f12edbc7370f070 308 PANTHER PTHR36151 9 298 1.8E-117 T 16-09-2016 BER92_RS17090 7679e5366b2718878f12edbc7370f070 308 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 50 270 6.7E-53 T 16-09-2016 IPR018713 Domain of unknown function DUF2236 BER92_RS17090 7679e5366b2718878f12edbc7370f070 308 PANTHER PTHR36151:SF3 9 298 1.8E-117 T 16-09-2016 BER92_RS09390 dc5010a256803d027c0a3197deed9853 579 PANTHER PTHR30255 24 575 1.2E-182 T 16-09-2016 BER92_RS09390 dc5010a256803d027c0a3197deed9853 579 Pfam PF02272 DHHA1 domain 381 451 5.6E-11 T 16-09-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 BER92_RS09390 dc5010a256803d027c0a3197deed9853 579 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 25 570 2.2E-131 T 16-09-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 BER92_RS09390 dc5010a256803d027c0a3197deed9853 579 SUPERFAMILY SSF64182 48 460 4.19E-104 T 16-09-2016 BER92_RS09390 dc5010a256803d027c0a3197deed9853 579 PANTHER PTHR30255:SF2 24 575 1.2E-182 T 16-09-2016 BER92_RS09390 dc5010a256803d027c0a3197deed9853 579 Pfam PF01368 DHH family 73 201 3.6E-10 T 16-09-2016 IPR001667 DDH domain BER92_RS09560 c604d4069a9b02a0cc3258a64298362e 260 Gene3D G3DSA:3.40.50.300 1 251 1.3E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09560 c604d4069a9b02a0cc3258a64298362e 260 PANTHER PTHR13696 1 260 1.5E-148 T 16-09-2016 BER92_RS09560 c604d4069a9b02a0cc3258a64298362e 260 Pfam PF13614 AAA domain 1 176 2.0E-38 T 16-09-2016 IPR025669 AAA domain BER92_RS09560 c604d4069a9b02a0cc3258a64298362e 260 SUPERFAMILY SSF52540 1 251 1.49E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09560 c604d4069a9b02a0cc3258a64298362e 260 PANTHER PTHR13696:SF69 1 260 1.5E-148 T 16-09-2016 BER92_RS15575 e24b418658430d9d9ff83d4d7d77f25c 212 SMART SM00882 6 202 2.6E-77 T 16-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 BER92_RS15575 e24b418658430d9d9ff83d4d7d77f25c 212 PANTHER PTHR13707 2 210 4.2E-133 T 16-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 BER92_RS15575 e24b418658430d9d9ff83d4d7d77f25c 212 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 207 2.1E-99 T 16-09-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 BER92_RS15575 e24b418658430d9d9ff83d4d7d77f25c 212 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 16-09-2016 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 BER92_RS15575 e24b418658430d9d9ff83d4d7d77f25c 212 SUPERFAMILY SSF100950 3 210 4.57E-74 T 16-09-2016 BER92_RS15575 e24b418658430d9d9ff83d4d7d77f25c 212 Gene3D G3DSA:3.40.810.20 3 210 2.6E-94 T 16-09-2016 BER92_RS15575 e24b418658430d9d9ff83d4d7d77f25c 212 Pfam PF01144 Coenzyme A transferase 6 188 2.3E-42 T 16-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 PRINTS PR01050 Pyruvate kinase family signature 190 204 3.4E-56 T 16-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 PRINTS PR01050 Pyruvate kinase family signature 272 296 3.4E-56 T 16-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 PRINTS PR01050 Pyruvate kinase family signature 63 79 3.4E-56 T 16-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 PRINTS PR01050 Pyruvate kinase family signature 247 271 3.4E-56 T 16-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 PRINTS PR01050 Pyruvate kinase family signature 297 315 3.4E-56 T 16-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 PRINTS PR01050 Pyruvate kinase family signature 220 246 3.4E-56 T 16-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 PRINTS PR01050 Pyruvate kinase family signature 316 332 3.4E-56 T 16-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 Pfam PF00224 Pyruvate kinase, barrel domain 6 342 6.0E-121 T 16-09-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 476 5.4E-155 T 16-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 Gene3D G3DSA:3.20.20.60 172 328 3.3E-91 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 Gene3D G3DSA:3.20.20.60 6 76 3.3E-91 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 PANTHER PTHR11817 3 479 6.7E-287 T 16-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 SUPERFAMILY SSF50800 74 171 2.09E-24 T 16-09-2016 IPR011037 Pyruvate kinase-like, insert domain BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 Gene3D G3DSA:3.40.1380.20 329 476 8.9E-36 T 16-09-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 Pfam PF02887 Pyruvate kinase, alpha/beta domain 360 473 5.6E-23 T 16-09-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 PANTHER PTHR11817:SF17 3 479 6.7E-287 T 16-09-2016 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 Gene3D G3DSA:2.40.33.10 77 171 6.0E-27 T 16-09-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 16-09-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 SUPERFAMILY SSF52935 327 476 2.88E-33 T 16-09-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 SUPERFAMILY SSF51621 2 78 3.25E-87 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS16785 3e243fd65b374aa0ae98e26dea78a5d8 488 SUPERFAMILY SSF51621 160 343 3.25E-87 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 Gene3D G3DSA:3.20.20.80 101 427 1.3E-74 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 Gene3D G3DSA:3.20.20.80 468 506 1.3E-74 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 PANTHER PTHR10357:SF110 11 454 1.9E-125 T 16-09-2016 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 SUPERFAMILY SSF51445 95 506 1.99E-96 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 SMART SM00642 96 453 4.6E-7 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 SUPERFAMILY SSF81296 11 93 4.37E-18 T 16-09-2016 IPR014756 Immunoglobulin E-set BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 Pfam PF11941 Domain of unknown function (DUF3459) 496 561 2.4E-8 T 16-09-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 Pfam PF00128 Alpha amylase, catalytic domain 125 214 3.2E-12 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 21 551 7.5E-211 T 16-09-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 PANTHER PTHR10357 489 546 1.9E-125 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 PANTHER PTHR10357 11 454 1.9E-125 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 12 73 1.6E-5 T 16-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 Gene3D G3DSA:2.60.40.10 16 93 6.8E-26 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 PIRSF PIRSF006337 7 581 6.9E-218 T 16-09-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 BER92_RS17595 60982e0aee8f5e94f93b87a320a93328 585 PANTHER PTHR10357:SF110 489 546 1.9E-125 T 16-09-2016 BER92_RS17845 ff9ffa3fb05e89bb41a2ed5f85c358b7 336 PANTHER PTHR10366 2 336 1.8E-128 T 16-09-2016 BER92_RS17845 ff9ffa3fb05e89bb41a2ed5f85c358b7 336 Gene3D G3DSA:3.40.50.720 2 323 1.5E-61 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17845 ff9ffa3fb05e89bb41a2ed5f85c358b7 336 PANTHER PTHR10366:SF460 2 336 1.8E-128 T 16-09-2016 BER92_RS17845 ff9ffa3fb05e89bb41a2ed5f85c358b7 336 SUPERFAMILY SSF51735 2 325 7.2E-66 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17845 ff9ffa3fb05e89bb41a2ed5f85c358b7 336 Pfam PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family 4 252 2.1E-48 T 16-09-2016 IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase GO:0003854|GO:0006694|GO:0016616|GO:0055114 BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 Pfam PF02355 Protein export membrane protein 127 296 6.3E-46 T 16-09-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 PRINTS PR01755 Bacterial translocase SecF protein signature 240 255 2.0E-27 T 16-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 PRINTS PR01755 Bacterial translocase SecF protein signature 209 227 2.0E-27 T 16-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 PRINTS PR01755 Bacterial translocase SecF protein signature 42 57 2.0E-27 T 16-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 PRINTS PR01755 Bacterial translocase SecF protein signature 161 175 2.0E-27 T 16-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 SUPERFAMILY SSF82866 77 297 6.54E-32 T 16-09-2016 BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 PANTHER PTHR30081 8 296 2.3E-68 T 16-09-2016 BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 43 292 1.1E-61 T 16-09-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 Gene3D G3DSA:1.20.1640.10 105 298 5.2E-19 T 16-09-2016 BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 Pfam PF07549 SecD/SecF GG Motif 38 64 1.4E-7 T 16-09-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BER92_RS12570 b3277e09447b4743644d80f58c5cdc7f 322 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 15 303 25.866 T 16-09-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 BER92_RS14080 fb7196b241c79b8a8f64e094440cc130 106 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 3 95 21.744 T 16-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family BER92_RS14080 fb7196b241c79b8a8f64e094440cc130 106 SUPERFAMILY SSF82607 9 100 5.49E-31 T 16-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family BER92_RS14080 fb7196b241c79b8a8f64e094440cc130 106 PANTHER PTHR33449 3 106 1.4E-47 T 16-09-2016 BER92_RS14080 fb7196b241c79b8a8f64e094440cc130 106 Gene3D G3DSA:3.30.1310.10 1 106 8.5E-44 T 16-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family BER92_RS14080 fb7196b241c79b8a8f64e094440cc130 106 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 2 102 1.2E-31 T 16-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family BER92_RS14080 fb7196b241c79b8a8f64e094440cc130 106 PIRSF PIRSF004555 1 106 3.1E-35 T 16-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family BER92_RS14080 fb7196b241c79b8a8f64e094440cc130 106 PANTHER PTHR33449:SF1 3 106 1.4E-47 T 16-09-2016 BER92_RS14080 fb7196b241c79b8a8f64e094440cc130 106 Pfam PF02575 YbaB/EbfC DNA-binding family 9 96 4.6E-32 T 16-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family BER92_RS02680 481d9a003f3cd01c843db573a288b561 305 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 5 300 9.5E-110 T 16-09-2016 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 BER92_RS02680 481d9a003f3cd01c843db573a288b561 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 96 1.9E-18 T 16-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BER92_RS02680 481d9a003f3cd01c843db573a288b561 305 PANTHER PTHR30349:SF17 2 305 1.8E-146 T 16-09-2016 BER92_RS02680 481d9a003f3cd01c843db573a288b561 305 Pfam PF00589 Phage integrase family 119 284 4.7E-47 T 16-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS02680 481d9a003f3cd01c843db573a288b561 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 1 298 34.999 T 16-09-2016 IPR023009 Tyrosine recombinase XerC/XerD BER92_RS02680 481d9a003f3cd01c843db573a288b561 305 Gene3D G3DSA:1.10.150.130 4 106 1.2E-26 T 16-09-2016 IPR023109 Integrase/recombinase, N-terminal BER92_RS02680 481d9a003f3cd01c843db573a288b561 305 SUPERFAMILY SSF56349 10 291 1.38E-54 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS02680 481d9a003f3cd01c843db573a288b561 305 Gene3D G3DSA:1.10.443.10 115 298 4.0E-53 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS02680 481d9a003f3cd01c843db573a288b561 305 PANTHER PTHR30349 2 305 1.8E-146 T 16-09-2016 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 115 201 17.54 T 16-09-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 121 203 2.2E-11 T 16-09-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 SUPERFAMILY SSF101386 117 205 1.33E-20 T 16-09-2016 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 61 110 1.0E-23 T 16-09-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 13 206 34.902 T 16-09-2016 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19|UniPathway: UPA00031|UniPathway: UPA00031 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 SUPERFAMILY SSF141734 13 114 2.88E-42 T 16-09-2016 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 119 198 1.2E-25 T 16-09-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 PANTHER PTHR21256 15 206 2.7E-101 T 16-09-2016 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 38 110 6.9E-31 T 16-09-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 BER92_RS09235 1440db04647e8f9e687547764485e33e 206 PANTHER PTHR21256:SF16 15 206 2.7E-101 T 16-09-2016 BER92_RS09005 dac0ad8e2524ad7926f7b6fa782fa944 227 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 218 1.9E-66 T 16-09-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 BER92_RS09005 dac0ad8e2524ad7926f7b6fa782fa944 227 SUPERFAMILY SSF52540 7 221 3.32E-41 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09005 dac0ad8e2524ad7926f7b6fa782fa944 227 Pfam PF02224 Cytidylate kinase 9 219 1.4E-66 T 16-09-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 BER92_RS09005 dac0ad8e2524ad7926f7b6fa782fa944 227 Gene3D G3DSA:3.40.50.300 6 221 1.9E-67 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09005 dac0ad8e2524ad7926f7b6fa782fa944 227 Hamap MF_00238 Cytidylate kinase [cmk]. 6 225 32.488 T 16-09-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 BER92_RS09005 dac0ad8e2524ad7926f7b6fa782fa944 227 PANTHER PTHR21299 6 224 1.2E-65 T 16-09-2016 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 8 291 54.026 T 16-09-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 PIRSF PIRSF000770 7 291 5.0E-35 T 16-09-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 259 285 - T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 Pfam PF04542 Sigma-70 region 2 60 129 8.0E-17 T 16-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 Pfam PF00140 Sigma-70 factor, region 1.2 22 53 1.2E-4 T 16-09-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 Gene3D G3DSA:1.10.10.10 231 287 8.9E-20 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 84 97 - T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 SUPERFAMILY SSF88946 22 129 7.06E-38 T 16-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 SUPERFAMILY SSF88659 203 288 8.97E-16 T 16-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 55 286 9.1E-31 T 16-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 PANTHER PTHR30376 9 287 4.8E-115 T 16-09-2016 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 Gene3D G3DSA:1.10.601.10 22 129 2.1E-35 T 16-09-2016 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 PRINTS PR00046 Major sigma-70 factor signature 84 97 4.2E-19 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 PRINTS PR00046 Major sigma-70 factor signature 259 274 4.2E-19 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 PRINTS PR00046 Major sigma-70 factor signature 239 251 4.2E-19 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 PRINTS PR00046 Major sigma-70 factor signature 274 285 4.2E-19 T 16-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 21 289 9.9E-126 T 16-09-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 BER92_RS00210 5484422b0fc29d12f57b6aa75b1c4eb4 291 Pfam PF04545 Sigma-70, region 4 236 286 1.4E-14 T 16-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS12515 d4a71c78b43428f825b90f01af546411 218 SUPERFAMILY SSF74653 136 214 5.23E-22 T 16-09-2016 BER92_RS12515 d4a71c78b43428f825b90f01af546411 218 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 140 216 4.6E-23 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS12515 d4a71c78b43428f825b90f01af546411 218 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 138 215 6.4E-23 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS12515 d4a71c78b43428f825b90f01af546411 218 PANTHER PTHR33446 1 218 8.2E-29 T 16-09-2016 BER92_RS12515 d4a71c78b43428f825b90f01af546411 218 PANTHER PTHR33446:SF2 1 218 8.2E-29 T 16-09-2016 BER92_RS12515 d4a71c78b43428f825b90f01af546411 218 Gene3D G3DSA:3.30.1150.10 137 217 2.8E-17 T 16-09-2016 BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 Pfam PF13180 PDZ domain 111 188 4.8E-13 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 63 371 2.0E-93 T 16-09-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 SUPERFAMILY SSF50156 105 191 2.52E-15 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 SUPERFAMILY SSF52096 200 375 1.13E-72 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 SUPERFAMILY SSF52096 50 129 1.13E-72 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 Gene3D G3DSA:2.30.42.10 117 190 2.2E-23 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 Pfam PF03572 Peptidase family S41 207 368 3.0E-53 T 16-09-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 SMART SM00245 181 371 1.1E-67 T 16-09-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 Gene3D G3DSA:3.90.226.10 191 373 2.0E-61 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 Gene3D G3DSA:3.30.750.44 59 116 2.8E-7 T 16-09-2016 BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 PANTHER PTHR32060 63 374 2.6E-112 T 16-09-2016 BER92_RS00120 ae05d39c3a922aad2c49da124b20966d 487 SMART SM00228 110 179 1.1E-9 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 16 47 - T 16-09-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 4 154 4.6E-57 T 16-09-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 PANTHER PTHR30437 4 156 1.3E-62 T 16-09-2016 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 Gene3D G3DSA:1.10.287.180 3 74 1.9E-33 T 16-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 Gene3D G3DSA:3.10.50.30 81 156 5.1E-29 T 16-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 SUPERFAMILY SSF46557 4 77 1.57E-27 T 16-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 73 1.0E-30 T 16-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 1 155 32.822 T 16-09-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 SUPERFAMILY SSF54534 82 156 3.79E-22 T 16-09-2016 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 PIRSF PIRSF006092 1 158 2.3E-49 T 16-09-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 BER92_RS09380 e51ee9bd13aaac554a722ad832fcfb62 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 156 3.1E-26 T 16-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BER92_RS11210 070ec6d3de80d7b70334e5bf64727ef9 124 Pfam PF01609 Transposase DDE domain 11 103 1.9E-17 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 PANTHER PTHR33175:SF2 2 94 4.0E-52 T 16-09-2016 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 29.832 T 16-09-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 Pfam PF00216 Bacterial DNA-binding protein 3 91 5.2E-32 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 96 6.9E-48 T 16-09-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 SMART SM00411 3 92 1.0E-42 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 Gene3D G3DSA:4.10.520.10 2 92 1.8E-36 T 16-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 SUPERFAMILY SSF47729 3 92 1.91E-32 T 16-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 PANTHER PTHR33175 2 94 4.0E-52 T 16-09-2016 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 8.2E-17 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 8.2E-17 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 8.2E-17 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS06025 cd12beb582a25a695fc437b78ad52108 99 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 16-09-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BER92_RS02080 a34b23a695b19ed5e96359c80c114336 145 PANTHER PTHR12231:SF138 25 145 9.3E-42 T 16-09-2016 BER92_RS02080 a34b23a695b19ed5e96359c80c114336 145 Pfam PF00581 Rhodanese-like domain 44 135 5.5E-17 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS02080 a34b23a695b19ed5e96359c80c114336 145 Gene3D G3DSA:3.40.250.10 27 143 1.1E-26 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS02080 a34b23a695b19ed5e96359c80c114336 145 PANTHER PTHR12231 25 145 9.3E-42 T 16-09-2016 BER92_RS02080 a34b23a695b19ed5e96359c80c114336 145 SMART SM00450 42 139 2.6E-21 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS02080 a34b23a695b19ed5e96359c80c114336 145 SUPERFAMILY SSF52821 23 143 3.4E-27 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS15670 9b8edcfad33609007a50b61e41fbf0a3 353 PANTHER PTHR12526 3 350 9.1E-146 T 16-09-2016 BER92_RS15670 9b8edcfad33609007a50b61e41fbf0a3 353 PANTHER PTHR12526:SF380 3 350 9.1E-146 T 16-09-2016 BER92_RS15670 9b8edcfad33609007a50b61e41fbf0a3 353 Gene3D G3DSA:3.40.50.2000 181 332 6.6E-14 T 16-09-2016 BER92_RS15670 9b8edcfad33609007a50b61e41fbf0a3 353 SUPERFAMILY SSF53756 3 350 2.87E-37 T 16-09-2016 BER92_RS15670 9b8edcfad33609007a50b61e41fbf0a3 353 Pfam PF00534 Glycosyl transferases group 1 181 318 5.5E-23 T 16-09-2016 IPR001296 Glycosyl transferase, family 1 BER92_RS05225 530740a6393301bf7a952a8488262a9a 180 PIRSF PIRSF002161 1 180 2.6E-65 T 16-09-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 BER92_RS05225 530740a6393301bf7a952a8488262a9a 180 ProSitePatterns PS00358 Ribosomal protein L5 signature. 58 74 - T 16-09-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05225 530740a6393301bf7a952a8488262a9a 180 Pfam PF00281 Ribosomal protein L5 25 81 1.9E-27 T 16-09-2016 IPR031310 Ribosomal protein L5, N-terminal BER92_RS05225 530740a6393301bf7a952a8488262a9a 180 PANTHER PTHR11994 1 179 4.9E-96 T 16-09-2016 BER92_RS05225 530740a6393301bf7a952a8488262a9a 180 Gene3D G3DSA:3.30.1440.10 3 180 2.9E-78 T 16-09-2016 IPR022803 Ribosomal protein L5 domain BER92_RS05225 530740a6393301bf7a952a8488262a9a 180 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 2 180 43.039 T 16-09-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05225 530740a6393301bf7a952a8488262a9a 180 SUPERFAMILY SSF55282 4 180 1.34E-76 T 16-09-2016 IPR022803 Ribosomal protein L5 domain BER92_RS05225 530740a6393301bf7a952a8488262a9a 180 Pfam PF00673 ribosomal L5P family C-terminus 85 178 9.9E-40 T 16-09-2016 IPR031309 Ribosomal protein L5, C-terminal BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 PANTHER PTHR11587 4 413 4.0E-134 T 16-09-2016 BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 25 33 - T 16-09-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 SUPERFAMILY SSF52402 20 201 2.65E-34 T 16-09-2016 BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 TIGRFAM TIGR00032 argG: argininosuccinate synthase 22 411 5.4E-81 T 16-09-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 Gene3D G3DSA:3.90.1260.10 192 412 2.3E-54 T 16-09-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 Gene3D G3DSA:3.40.50.620 18 191 1.8E-38 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 133 144 - T 16-09-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 SUPERFAMILY SSF69864 191 412 1.03E-55 T 16-09-2016 BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 Hamap MF_00005 Argininosuccinate synthase [argG]. 19 413 39.489 T 16-09-2016 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 Pfam PF00764 Arginosuccinate synthase 23 408 7.3E-83 T 16-09-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11885 6ceebbd15369e428f54af6f5fa94d045 413 PANTHER PTHR11587:SF2 4 413 4.0E-134 T 16-09-2016 BER92_RS08150 8712e73073ada1b9aaf2da010859f522 235 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 96 235 2.4E-27 T 16-09-2016 IPR018636 Protein of unknown function DUF2058 BER92_RS09750 39e518bf7e7a55b31de670968f009f4d 143 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 42 138 3.9E-34 T 16-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 BER92_RS09750 39e518bf7e7a55b31de670968f009f4d 143 Gene3D G3DSA:3.10.50.40 34 142 4.2E-43 T 16-09-2016 BER92_RS09750 39e518bf7e7a55b31de670968f009f4d 143 SUPERFAMILY SSF54534 31 140 8.64E-38 T 16-09-2016 BER92_RS09750 39e518bf7e7a55b31de670968f009f4d 143 PANTHER PTHR10516 34 143 7.0E-50 T 16-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 SMART SM00382 92 374 9.8E-5 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 Pfam PF11898 Domain of unknown function (DUF3418) 785 1361 4.2E-172 T 16-09-2016 IPR024590 RNA helicase HrpA, C-terminal BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 Pfam PF00270 DEAD/DEAH box helicase 84 233 1.6E-7 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 Gene3D G3DSA:3.40.50.300 76 234 1.6E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 Pfam PF00271 Helicase conserved C-terminal domain 286 407 1.3E-9 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 PANTHER PTHR18934:SF109 75 612 0.0 T 16-09-2016 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 PANTHER PTHR18934 811 939 0.0 T 16-09-2016 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 SUPERFAMILY SSF52540 77 606 2.11E-101 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 PANTHER PTHR18934 75 612 0.0 T 16-09-2016 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 45 612 1.3E-268 T 16-09-2016 IPR010222 RNA helicase HrpA GO:0004004 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 665 770 3.0E-20 T 16-09-2016 IPR011709 Domain of unknown function DUF1605 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 SMART SM00487 68 259 3.0E-27 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 PANTHER PTHR18934 689 781 0.0 T 16-09-2016 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 SMART SM00490 308 408 7.8E-14 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 Gene3D G3DSA:3.40.50.300 280 420 2.0E-9 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 SMART SM00847 468 558 2.0E-32 T 16-09-2016 IPR007502 Helicase-associated domain GO:0004386 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 Pfam PF04408 Helicase associated domain (HA2) 471 536 4.0E-17 T 16-09-2016 IPR007502 Helicase-associated domain GO:0004386 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 PANTHER PTHR18934:SF109 811 939 0.0 T 16-09-2016 BER92_RS04095 ef7043cd0bd938080a4461380878b972 1365 PANTHER PTHR18934:SF109 689 781 0.0 T 16-09-2016 BER92_RS13455 fb3a81f140fb46bd5a47b77d68a7a3e1 230 PANTHER PTHR10146 3 223 6.6E-89 T 16-09-2016 IPR011078 Uncharacterised protein family UPF0001 BER92_RS13455 fb3a81f140fb46bd5a47b77d68a7a3e1 230 SUPERFAMILY SSF51419 5 220 1.83E-72 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS13455 fb3a81f140fb46bd5a47b77d68a7a3e1 230 PIRSF PIRSF004848 3 227 1.4E-72 T 16-09-2016 IPR011078 Uncharacterised protein family UPF0001 BER92_RS13455 fb3a81f140fb46bd5a47b77d68a7a3e1 230 Pfam PF01168 Alanine racemase, N-terminal domain 16 222 4.1E-32 T 16-09-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS13455 fb3a81f140fb46bd5a47b77d68a7a3e1 230 Gene3D G3DSA:3.20.20.10 4 225 4.7E-85 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS13455 fb3a81f140fb46bd5a47b77d68a7a3e1 230 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 6 222 1.8E-70 T 16-09-2016 IPR011078 Uncharacterised protein family UPF0001 BER92_RS07515 75aa3220b9a57aae4719d52007226ecb 459 SUPERFAMILY SSF54368 22 119 6.41E-12 T 16-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS07515 75aa3220b9a57aae4719d52007226ecb 459 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 16-09-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS07515 75aa3220b9a57aae4719d52007226ecb 459 Pfam PF00120 Glutamine synthetase, catalytic domain 122 455 8.3E-97 T 16-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS07515 75aa3220b9a57aae4719d52007226ecb 459 Gene3D G3DSA:3.10.20.70 22 124 2.9E-9 T 16-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS07515 75aa3220b9a57aae4719d52007226ecb 459 Gene3D G3DSA:3.30.590.10 125 444 2.1E-89 T 16-09-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 BER92_RS07515 75aa3220b9a57aae4719d52007226ecb 459 SUPERFAMILY SSF55931 122 456 5.2E-98 T 16-09-2016 BER92_RS07515 75aa3220b9a57aae4719d52007226ecb 459 PANTHER PTHR20852 25 459 2.7E-116 T 16-09-2016 BER92_RS07515 75aa3220b9a57aae4719d52007226ecb 459 PANTHER PTHR20852:SF7 25 459 2.7E-116 T 16-09-2016 BER92_RS07515 75aa3220b9a57aae4719d52007226ecb 459 SMART SM01230 121 378 2.2E-99 T 16-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS01380 e602522881587f750553da2cf9e3d8c6 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS01380 e602522881587f750553da2cf9e3d8c6 455 Pfam PF05598 Transposase domain (DUF772) 59 133 1.5E-16 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS01380 e602522881587f750553da2cf9e3d8c6 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS01380 e602522881587f750553da2cf9e3d8c6 455 Pfam PF01609 Transposase DDE domain 284 421 1.3E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14465 1d831fa632c580d82e121afe2b7f8353 633 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 13 633 33.547 T 16-09-2016 IPR023051 Potassium uptake protein, low affinity, Kup BER92_RS14465 1d831fa632c580d82e121afe2b7f8353 633 PANTHER PTHR30540:SF7 18 558 1.7E-254 T 16-09-2016 BER92_RS14465 1d831fa632c580d82e121afe2b7f8353 633 PANTHER PTHR30540 18 558 1.7E-254 T 16-09-2016 BER92_RS14465 1d831fa632c580d82e121afe2b7f8353 633 Pfam PF02705 K+ potassium transporter 22 554 1.2E-212 T 16-09-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 BER92_RS13925 c7827387a23c30d1991edc5464ee35a5 399 PANTHER PTHR30349:SF21 1 381 1.8E-134 T 16-09-2016 BER92_RS13925 c7827387a23c30d1991edc5464ee35a5 399 Gene3D G3DSA:3.10.310.10 2 196 1.3E-89 T 16-09-2016 BER92_RS13925 c7827387a23c30d1991edc5464ee35a5 399 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 4 394 2.2E-230 T 16-09-2016 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 UniPathway: UPA00946 BER92_RS13925 c7827387a23c30d1991edc5464ee35a5 399 SUPERFAMILY SSF54506 2 182 5.96E-69 T 16-09-2016 BER92_RS13925 c7827387a23c30d1991edc5464ee35a5 399 Pfam PF04303 PrpF protein 6 392 3.9E-175 T 16-09-2016 IPR007400 PrpF protein BER92_RS13925 c7827387a23c30d1991edc5464ee35a5 399 SUPERFAMILY SSF54506 190 393 4.13E-74 T 16-09-2016 BER92_RS13925 c7827387a23c30d1991edc5464ee35a5 399 Gene3D G3DSA:3.10.310.10 197 375 4.3E-78 T 16-09-2016 BER92_RS13925 c7827387a23c30d1991edc5464ee35a5 399 PANTHER PTHR30349 1 381 1.8E-134 T 16-09-2016 BER92_RS19200 a25a3498beaf583b1428ae1ec5e3fb43 264 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS19200 a25a3498beaf583b1428ae1ec5e3fb43 264 SUPERFAMILY SSF52540 7 235 2.83E-58 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19200 a25a3498beaf583b1428ae1ec5e3fb43 264 PANTHER PTHR24220:SF368 10 253 1.8E-94 T 16-09-2016 BER92_RS19200 a25a3498beaf583b1428ae1ec5e3fb43 264 Pfam PF00005 ABC transporter 25 171 3.8E-27 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS19200 a25a3498beaf583b1428ae1ec5e3fb43 264 PANTHER PTHR24220 10 253 1.8E-94 T 16-09-2016 BER92_RS19200 a25a3498beaf583b1428ae1ec5e3fb43 264 Gene3D G3DSA:3.40.50.300 4 235 1.4E-61 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19200 a25a3498beaf583b1428ae1ec5e3fb43 264 SMART SM00382 33 221 1.8E-10 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 3 398 44.356 T 16-09-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 PANTHER PTHR13697 83 381 8.2E-178 T 16-09-2016 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 Gene3D G3DSA:3.40.50.450 8 189 6.0E-37 T 16-09-2016 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 Gene3D G3DSA:3.40.50.460 190 359 2.3E-17 T 16-09-2016 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 Pfam PF00365 Phosphofructokinase 10 321 2.5E-48 T 16-09-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 PIRSF PIRSF036483 2 417 2.1E-216 T 16-09-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 256 278 1.8E-9 T 16-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 8 27 1.8E-9 T 16-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 134 151 1.8E-9 T 16-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 192 1.8E-9 T 16-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 PANTHER PTHR13697:SF19 83 381 8.2E-178 T 16-09-2016 BER92_RS03420 0f222de04e9c6ac799a2d2e32d907bf7 420 SUPERFAMILY SSF53784 5 416 2.88E-104 T 16-09-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 Gene3D G3DSA:3.90.190.20 312 452 2.0E-30 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 9 456 27.224 T 16-09-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 452 1.4E-87 T 16-09-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 Gene3D G3DSA:3.40.50.720 5 92 5.2E-5 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 PANTHER PTHR23135:SF2 2 453 1.9E-122 T 16-09-2016 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 384 3.5E-6 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 Pfam PF08245 Mur ligase middle domain 121 291 8.4E-24 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 119 142 - T 16-09-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 PANTHER PTHR23135 2 453 1.9E-122 T 16-09-2016 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 Gene3D G3DSA:3.40.1190.10 118 309 8.3E-47 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 SUPERFAMILY SSF53244 311 453 2.32E-27 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS13375 efb38f4b0c2cbe371ea67e9822768f54 469 SUPERFAMILY SSF53623 119 308 1.57E-41 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS08775 41d2f0e17efb72ab22cac4f778884248 259 SUPERFAMILY SSF64167 1 250 5.62E-85 T 16-09-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 BER92_RS08775 41d2f0e17efb72ab22cac4f778884248 259 Gene3D G3DSA:3.40.1210.10 1 248 8.6E-88 T 16-09-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 BER92_RS08775 41d2f0e17efb72ab22cac4f778884248 259 PANTHER PTHR30457 1 247 3.0E-96 T 16-09-2016 BER92_RS08775 41d2f0e17efb72ab22cac4f778884248 259 Pfam PF01975 Survival protein SurE 3 185 1.3E-57 T 16-09-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 BER92_RS08775 41d2f0e17efb72ab22cac4f778884248 259 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 253 41.08 T 16-09-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 BER92_RS08775 41d2f0e17efb72ab22cac4f778884248 259 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 236 5.8E-70 T 16-09-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 BER92_RS17915 8572b448a609572aeb92acddec1536e5 69 PANTHER PTHR37424:SF1 2 69 4.6E-19 T 16-09-2016 BER92_RS17915 8572b448a609572aeb92acddec1536e5 69 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 1.5E-12 T 16-09-2016 IPR007419 BFD-like [2Fe-2S]-binding domain BER92_RS17915 8572b448a609572aeb92acddec1536e5 69 PANTHER PTHR37424 2 69 4.6E-19 T 16-09-2016 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 Gene3D G3DSA:3.30.360.10 180 364 9.1E-33 T 16-09-2016 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 PANTHER PTHR22604:SF125 1 369 4.8E-222 T 16-09-2016 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 SUPERFAMILY SSF55347 168 316 6.87E-20 T 16-09-2016 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 287 302 3.0E-18 T 16-09-2016 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530|UniPathway: UPA00815 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 152 166 3.0E-18 T 16-09-2016 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530|UniPathway: UPA00815 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 335 351 3.0E-18 T 16-09-2016 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530|UniPathway: UPA00815 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 36 49 3.0E-18 T 16-09-2016 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530|UniPathway: UPA00815 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 90 106 3.0E-18 T 16-09-2016 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530|UniPathway: UPA00815 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 SUPERFAMILY SSF51735 30 188 3.78E-42 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 Gene3D G3DSA:3.40.50.720 33 179 1.9E-39 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 38 162 6.7E-23 T 16-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 BER92_RS04815 696f3d1a7432e1dd907d18b08ea9935c 369 PANTHER PTHR22604 1 369 4.8E-222 T 16-09-2016 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 PIRSF PIRSF000429 1 391 5.1E-110 T 16-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 SUPERFAMILY SSF53901 3 267 1.35E-76 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 SUPERFAMILY SSF53901 269 390 5.4E-39 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 Gene3D G3DSA:3.40.47.10 194 274 1.4E-68 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 Gene3D G3DSA:3.40.47.10 3 123 1.4E-68 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 9.7E-122 T 16-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 6.8E-85 T 16-09-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 16-09-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 Pfam PF02803 Thiolase, C-terminal domain 269 389 2.0E-41 T 16-09-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 Gene3D G3DSA:3.40.47.10 142 193 2.2E-56 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 Gene3D G3DSA:3.40.47.10 275 389 2.2E-56 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 16-09-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 PANTHER PTHR18919 1 391 1.8E-222 T 16-09-2016 BER92_RS07085 73685fad44201b75742dcd7ddf3184af 391 PANTHER PTHR18919:SF110 1 391 1.8E-222 T 16-09-2016 BER92_RS01210 4110fc62c6262535a33aa24e28e6c415 78 Pfam PF00830 Ribosomal L28 family 3 62 3.4E-27 T 16-09-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 BER92_RS01210 4110fc62c6262535a33aa24e28e6c415 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 2.1E-26 T 16-09-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS01210 4110fc62c6262535a33aa24e28e6c415 78 Gene3D G3DSA:2.30.170.40 2 78 1.4E-37 T 16-09-2016 BER92_RS01210 4110fc62c6262535a33aa24e28e6c415 78 PANTHER PTHR13528 1 70 9.9E-36 T 16-09-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 BER92_RS01210 4110fc62c6262535a33aa24e28e6c415 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.613 T 16-09-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS01210 4110fc62c6262535a33aa24e28e6c415 78 SUPERFAMILY SSF143800 2 77 4.32E-31 T 16-09-2016 BER92_RS06495 253b71249fcb796e9a985f437891f014 376 PANTHER PTHR11014 3 376 1.1E-82 T 16-09-2016 BER92_RS06495 253b71249fcb796e9a985f437891f014 376 SUPERFAMILY SSF55031 179 287 1.94E-28 T 16-09-2016 IPR011650 Peptidase M20, dimerisation domain BER92_RS06495 253b71249fcb796e9a985f437891f014 376 Pfam PF07687 Peptidase dimerisation domain 175 282 9.0E-26 T 16-09-2016 IPR011650 Peptidase M20, dimerisation domain BER92_RS06495 253b71249fcb796e9a985f437891f014 376 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 135 - T 16-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 BER92_RS06495 253b71249fcb796e9a985f437891f014 376 Gene3D G3DSA:3.30.70.360 188 286 1.1E-31 T 16-09-2016 IPR011650 Peptidase M20, dimerisation domain BER92_RS06495 253b71249fcb796e9a985f437891f014 376 Pfam PF01546 Peptidase family M20/M25/M40 63 371 5.2E-41 T 16-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 BER92_RS06495 253b71249fcb796e9a985f437891f014 376 SUPERFAMILY SSF53187 2 178 7.07E-63 T 16-09-2016 BER92_RS06495 253b71249fcb796e9a985f437891f014 376 SUPERFAMILY SSF53187 292 373 7.07E-63 T 16-09-2016 BER92_RS06495 253b71249fcb796e9a985f437891f014 376 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 5 373 4.4E-165 T 16-09-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 BER92_RS06495 253b71249fcb796e9a985f437891f014 376 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 2 375 49.87 T 16-09-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 BER92_RS06495 253b71249fcb796e9a985f437891f014 376 Gene3D G3DSA:3.40.630.10 1 187 3.6E-72 T 16-09-2016 BER92_RS06495 253b71249fcb796e9a985f437891f014 376 Gene3D G3DSA:3.40.630.10 316 374 3.6E-72 T 16-09-2016 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 Gene3D G3DSA:2.60.40.1180 478 558 2.5E-17 T 16-09-2016 IPR013780 Glycosyl hydrolase, all-beta BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 SUPERFAMILY SSF51445 34 478 2.83E-131 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 Gene3D G3DSA:3.90.400.10 122 190 4.4E-26 T 16-09-2016 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 Gene3D G3DSA:3.20.20.80 457 470 1.5E-109 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 Gene3D G3DSA:3.20.20.80 198 424 1.5E-109 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 Gene3D G3DSA:3.20.20.80 24 121 1.5E-109 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 22 558 2.6E-298 T 16-09-2016 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 Pfam PF16657 Maltogenic Amylase, C-terminal domain 478 554 3.3E-25 T 16-09-2016 IPR032091 Maltogenic Amylase, C-terminal BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 Pfam PF00128 Alpha amylase, catalytic domain 45 399 8.0E-77 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 SUPERFAMILY SSF51011 478 558 3.08E-16 T 16-09-2016 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 PANTHER PTHR10357 12 415 5.7E-301 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 PANTHER PTHR10357:SF164 454 585 5.7E-301 T 16-09-2016 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 SMART SM00642 30 430 1.8E-106 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 575 1106 6.7E-210 T 16-09-2016 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 PANTHER PTHR10357 454 585 5.7E-301 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 SUPERFAMILY SSF56112 864 1007 1.69E-15 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 SUPERFAMILY SSF56112 1038 1060 1.69E-15 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 SUPERFAMILY SSF56112 732 836 1.69E-15 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 PANTHER PTHR10357:SF164 12 415 5.7E-301 T 16-09-2016 BER92_RS18810 103a1c7915984c8cf01b8544b77a033d 1116 Gene3D G3DSA:3.90.1200.10 864 980 8.5E-5 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PANTHER PTHR10617 329 393 5.3E-126 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PANTHER PTHR10617 1 286 5.3E-126 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 Pfam PF03486 HI0933-like protein 5 391 2.4E-142 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PANTHER PTHR10617:SF103 329 393 5.3E-126 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 Gene3D G3DSA:3.50.50.60 2 187 5.0E-50 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 Gene3D G3DSA:3.50.50.60 338 391 5.0E-50 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 Gene3D G3DSA:1.10.8.260 269 320 5.9E-12 T 16-09-2016 IPR023166 HI0933 insert-like domain BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 390 4.1E-124 T 16-09-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 Gene3D G3DSA:2.40.30.10 189 268 4.0E-28 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PANTHER PTHR10617:SF103 1 286 5.3E-126 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 SUPERFAMILY SSF51905 1 189 3.92E-58 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 SUPERFAMILY SSF51905 336 391 3.92E-58 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 5.0E-6 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 5.0E-6 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 346 368 5.0E-6 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 SUPERFAMILY SSF160996 191 339 3.4E-36 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.5E-8 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 361 368 1.5E-8 T 16-09-2016 BER92_RS12070 875f3d1e6a216a4c88a52df4268c327c 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 165 1.5E-8 T 16-09-2016 BER92_RS08560 c0865f51043283f26ee344d97cf9206f 282 Pfam PF02666 Phosphatidylserine decarboxylase 61 277 2.4E-52 T 16-09-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 BER92_RS08560 c0865f51043283f26ee344d97cf9206f 282 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 48 278 5.6E-59 T 16-09-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 BER92_RS08560 c0865f51043283f26ee344d97cf9206f 282 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 8 280 44.972 T 16-09-2016 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 BER92_RS08560 c0865f51043283f26ee344d97cf9206f 282 PANTHER PTHR10067 7 279 3.0E-89 T 16-09-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 BER92_RS13320 0f6161a23f5df92d37eef3d8dd1d6716 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 1.7E-23 T 16-09-2016 IPR023214 HAD-like domain BER92_RS13320 0f6161a23f5df92d37eef3d8dd1d6716 226 PANTHER PTHR18901 1 220 1.3E-60 T 16-09-2016 BER92_RS13320 0f6161a23f5df92d37eef3d8dd1d6716 226 Gene3D G3DSA:3.40.50.1000 2 19 3.9E-40 T 16-09-2016 IPR023214 HAD-like domain BER92_RS13320 0f6161a23f5df92d37eef3d8dd1d6716 226 Gene3D G3DSA:3.40.50.1000 87 220 3.9E-40 T 16-09-2016 IPR023214 HAD-like domain BER92_RS13320 0f6161a23f5df92d37eef3d8dd1d6716 226 SUPERFAMILY SSF56784 4 219 4.06E-48 T 16-09-2016 IPR023214 HAD-like domain BER92_RS13320 0f6161a23f5df92d37eef3d8dd1d6716 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 73 183 1.1E-17 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS13320 0f6161a23f5df92d37eef3d8dd1d6716 226 PANTHER PTHR18901:SF9 1 220 1.3E-60 T 16-09-2016 BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 SUPERFAMILY SSF52440 12 126 2.95E-49 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 SUPERFAMILY SSF51230 594 668 3.01E-18 T 16-09-2016 IPR011053 Single hybrid motif BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 SUPERFAMILY SSF56059 96 356 2.83E-68 T 16-09-2016 BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 Gene3D G3DSA:3.30.1490.20 142 215 7.0E-27 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 Gene3D G3DSA:3.40.50.20 15 141 1.1E-53 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 626 643 - T 16-09-2016 IPR001882 Biotin-binding site BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 335 4.2E-73 T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 Pfam PF02785 Biotin carboxylase C-terminal domain 349 457 7.6E-36 T 16-09-2016 IPR005482 Biotin carboxylase, C-terminal BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 299 306 - T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 Gene3D G3DSA:3.30.470.20 216 460 7.3E-100 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 Gene3D G3DSA:2.40.50.100 601 669 4.8E-20 T 16-09-2016 BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 Pfam PF00364 Biotin-requiring enzyme 605 668 1.0E-12 T 16-09-2016 IPR000089 Biotin/lipoyl attachment BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 SUPERFAMILY SSF51246 344 460 2.04E-36 T 16-09-2016 IPR011054 Rudiment single hybrid motif BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 PANTHER PTHR18866 12 669 0.0 T 16-09-2016 BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 PANTHER PTHR18866:SF102 12 669 0.0 T 16-09-2016 BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 SMART SM00878 349 456 7.5E-53 T 16-09-2016 IPR005482 Biotin carboxylase, C-terminal BER92_RS16640 92e8b1c5264c9a36b55918cd58aa6e8f 674 Pfam PF00289 Biotin carboxylase, N-terminal domain 15 123 2.8E-45 T 16-09-2016 IPR005481 Biotin carboxylase-like, N-terminal domain BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 Pfam PF13360 PQQ-like domain 575 679 3.1E-5 T 16-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 Gene3D G3DSA:2.140.10.10 473 701 8.3E-132 T 16-09-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 Gene3D G3DSA:2.140.10.10 60 431 8.3E-132 T 16-09-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 Pfam PF01011 PQQ enzyme repeat 340 364 1.1E-4 T 16-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 PANTHER PTHR32303:SF4 29 405 1.6E-125 T 16-09-2016 BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 PANTHER PTHR32303:SF4 481 700 1.6E-125 T 16-09-2016 BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 61 697 1.5E-264 T 16-09-2016 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 SMART SM00564 621 653 11.0 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 SMART SM00564 120 151 9.4 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 SMART SM00564 234 277 9.1 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 SMART SM00564 305 355 48.0 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 PANTHER PTHR32303 29 405 1.6E-125 T 16-09-2016 BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 PANTHER PTHR32303 481 700 1.6E-125 T 16-09-2016 BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 SUPERFAMILY SSF50998 60 419 5.1E-132 T 16-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BER92_RS03965 9b19bdbe096099937f447382cfa85a7a 706 SUPERFAMILY SSF50998 462 697 5.1E-132 T 16-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BER92_RS18415 8da3bfaed6c0a22c7aed5a4b891f2bb9 424 SUPERFAMILY SSF102645 211 423 9.81E-72 T 16-09-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 BER92_RS18415 8da3bfaed6c0a22c7aed5a4b891f2bb9 424 SUPERFAMILY SSF52507 10 183 2.35E-57 T 16-09-2016 IPR003382 Flavoprotein GO:0003824 BER92_RS18415 8da3bfaed6c0a22c7aed5a4b891f2bb9 424 Pfam PF02441 Flavoprotein 14 141 2.3E-33 T 16-09-2016 IPR003382 Flavoprotein GO:0003824 BER92_RS18415 8da3bfaed6c0a22c7aed5a4b891f2bb9 424 PANTHER PTHR14359:SF20 8 423 1.7E-199 T 16-09-2016 BER92_RS18415 8da3bfaed6c0a22c7aed5a4b891f2bb9 424 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 11 418 3.0E-128 T 16-09-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 BER92_RS18415 8da3bfaed6c0a22c7aed5a4b891f2bb9 424 PANTHER PTHR14359 8 423 1.7E-199 T 16-09-2016 BER92_RS18415 8da3bfaed6c0a22c7aed5a4b891f2bb9 424 Gene3D G3DSA:3.40.50.1950 9 185 8.1E-62 T 16-09-2016 IPR003382 Flavoprotein GO:0003824 BER92_RS18415 8da3bfaed6c0a22c7aed5a4b891f2bb9 424 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 213 392 5.9E-67 T 16-09-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 BER92_RS18415 8da3bfaed6c0a22c7aed5a4b891f2bb9 424 Gene3D G3DSA:3.40.50.10300 210 423 5.6E-79 T 16-09-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 PANTHER PTHR30069 804 1020 9.8E-281 T 16-09-2016 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 PANTHER PTHR30069 1 775 9.8E-281 T 16-09-2016 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 Gene3D G3DSA:2.60.40.1120 33 114 5.5E-11 T 16-09-2016 IPR014766 Carboxypeptidase, regulatory domain BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 Pfam PF13620 Carboxypeptidase regulatory-like domain 34 114 3.0E-15 T 16-09-2016 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 SUPERFAMILY SSF49464 33 117 2.31E-11 T 16-09-2016 IPR008969 Carboxypeptidase-like, regulatory domain BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 SUPERFAMILY SSF56935 365 737 8.42E-51 T 16-09-2016 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 SUPERFAMILY SSF56935 965 1019 8.42E-51 T 16-09-2016 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 SUPERFAMILY SSF56935 799 919 8.42E-51 T 16-09-2016 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 SUPERFAMILY SSF56935 144 325 8.42E-51 T 16-09-2016 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 Pfam PF07715 TonB-dependent Receptor Plug Domain 145 245 2.1E-4 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 PANTHER PTHR30069:SF6 804 1020 9.8E-281 T 16-09-2016 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 Gene3D G3DSA:2.170.130.10 143 249 4.1E-6 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 Gene3D G3DSA:2.40.170.20 364 917 4.5E-36 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 Gene3D G3DSA:2.40.170.20 250 332 4.5E-36 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 Gene3D G3DSA:2.40.170.20 973 1017 4.5E-36 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS07405 32bf065e7394bb28ab937135c9111827 1075 PANTHER PTHR30069:SF6 1 775 9.8E-281 T 16-09-2016 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 Gene3D G3DSA:3.20.20.150 10 444 2.4E-193 T 16-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 Hamap MF_00455 Xylose isomerase [xylA]. 19 444 53.217 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 12 444 1.2E-209 T 16-09-2016 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PRINTS PR00688 Xylose isomerase signature 237 261 4.6E-78 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PRINTS PR00688 Xylose isomerase signature 188 209 4.6E-78 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PRINTS PR00688 Xylose isomerase signature 279 306 4.6E-78 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PRINTS PR00688 Xylose isomerase signature 341 352 4.6E-78 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PRINTS PR00688 Xylose isomerase signature 164 183 4.6E-78 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PRINTS PR00688 Xylose isomerase signature 308 319 4.6E-78 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PRINTS PR00688 Xylose isomerase signature 100 122 4.6E-78 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PRINTS PR00688 Xylose isomerase signature 215 234 4.6E-78 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PRINTS PR00688 Xylose isomerase signature 141 161 4.6E-78 T 16-09-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PANTHER PTHR32176:SF0 1 446 2.4E-262 T 16-09-2016 BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 SUPERFAMILY SSF51658 11 444 1.54E-162 T 16-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain BER92_RS10865 18138c12b52651ce357f284d3e8bee43 446 PANTHER PTHR32176 1 446 2.4E-262 T 16-09-2016 BER92_RS08780 15fd4b4e5981a3cfdf0ef0eabca4665b 225 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 145 160 - T 16-09-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BER92_RS08780 15fd4b4e5981a3cfdf0ef0eabca4665b 225 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 18 222 1.7E-59 T 16-09-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BER92_RS08780 15fd4b4e5981a3cfdf0ef0eabca4665b 225 SUPERFAMILY SSF53335 19 222 5.31E-43 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08780 15fd4b4e5981a3cfdf0ef0eabca4665b 225 Gene3D G3DSA:3.40.50.150 29 222 1.6E-58 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08780 15fd4b4e5981a3cfdf0ef0eabca4665b 225 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 23 221 4.2E-55 T 16-09-2016 BER92_RS08780 15fd4b4e5981a3cfdf0ef0eabca4665b 225 PANTHER PTHR11579 13 221 2.1E-76 T 16-09-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BER92_RS08780 15fd4b4e5981a3cfdf0ef0eabca4665b 225 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 17 225 35.012 T 16-09-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 SUPERFAMILY SSF55326 3 134 4.54E-32 T 16-09-2016 BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 322 3.8E-108 T 16-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 Gene3D G3DSA:3.90.650.10 142 322 9.4E-48 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 Gene3D G3DSA:3.30.1330.10 1 137 4.4E-44 T 16-09-2016 IPR016188 PurM-like, N-terminal domain BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 319 29.872 T 16-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 PANTHER PTHR30270 1 324 5.3E-125 T 16-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 Pfam PF02769 AIR synthase related protein, C-terminal domain 147 305 7.2E-14 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 PANTHER PTHR30270:SF0 1 324 5.3E-125 T 16-09-2016 BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 PIRSF PIRSF005303 1 322 6.0E-86 T 16-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 Pfam PF00586 AIR synthase related protein, N-terminal domain 26 134 2.1E-22 T 16-09-2016 IPR016188 PurM-like, N-terminal domain BER92_RS02390 7b1a118826eb95e0a34ddf930e529ed3 324 SUPERFAMILY SSF56042 140 308 7.33E-38 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS01155 53e6fafc249cddc56a69478e32f235d4 460 SUPERFAMILY SSF56935 156 460 9.52E-19 T 16-09-2016 BER92_RS01155 53e6fafc249cddc56a69478e32f235d4 460 SUPERFAMILY SSF56935 100 127 9.52E-19 T 16-09-2016 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 SUPERFAMILY SSF52016 654 916 4.12E-82 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 16 916 0.0 T 16-09-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 Pfam PF00330 Aconitase family (aconitate hydratase) 67 585 2.0E-181 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 ProSitePatterns PS01244 Aconitase family signature 2. 516 529 - T 16-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PANTHER PTHR11670:SF1 439 674 0.0 T 16-09-2016 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 Gene3D G3DSA:3.30.499.10 29 247 1.3E-76 T 16-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 Pfam PF00694 Aconitase C-terminal domain 715 846 1.7E-43 T 16-09-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 ProSitePatterns PS00450 Aconitase family signature 1. 450 466 - T 16-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PANTHER PTHR11670:SF1 778 920 0.0 T 16-09-2016 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PRINTS PR00415 Aconitase family signature 215 230 4.7E-41 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PRINTS PR00415 Aconitase family signature 277 290 4.7E-41 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PRINTS PR00415 Aconitase family signature 291 304 4.7E-41 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PRINTS PR00415 Aconitase family signature 371 385 4.7E-41 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PRINTS PR00415 Aconitase family signature 454 465 4.7E-41 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PRINTS PR00415 Aconitase family signature 201 214 4.7E-41 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PRINTS PR00415 Aconitase family signature 144 157 4.7E-41 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PRINTS PR00415 Aconitase family signature 168 176 4.7E-41 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PRINTS PR00415 Aconitase family signature 516 529 4.7E-41 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PANTHER PTHR11670 778 920 0.0 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 Gene3D G3DSA:3.40.1060.10 248 366 1.1E-35 T 16-09-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 Gene3D G3DSA:3.20.19.10 661 916 2.2E-74 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 SUPERFAMILY SSF53732 3 649 3.53E-224 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PANTHER PTHR11670 690 735 0.0 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PANTHER PTHR11670 8 392 0.0 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PANTHER PTHR11670 439 674 0.0 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PANTHER PTHR11670:SF1 690 735 0.0 T 16-09-2016 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 PANTHER PTHR11670:SF1 8 392 0.0 T 16-09-2016 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 Gene3D G3DSA:3.30.499.10 368 392 4.2E-63 T 16-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09435 6604ce4437168ba2a720aa5b2e68f227 922 Gene3D G3DSA:3.30.499.10 442 598 4.2E-63 T 16-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS00960 287d817e225756903b909a9edcad7e76 351 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 128 312 1.2E-7 T 16-09-2016 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 BER92_RS00960 287d817e225756903b909a9edcad7e76 351 SUPERFAMILY SSF53756 7 318 2.09E-32 T 16-09-2016 BER92_RS00960 287d817e225756903b909a9edcad7e76 351 PIRSF PIRSF028458 1 351 1.0E-176 T 16-09-2016 IPR016886 Predicted glycerophosphotransferase UCP028458 BER92_RS00960 287d817e225756903b909a9edcad7e76 351 Gene3D G3DSA:3.40.50.2000 222 313 2.9E-5 T 16-09-2016 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 11 364 1.3E-144 T 16-09-2016 IPR016496 GTPase HflX GO:0005525 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 199 358 8.9E-12 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 PIRSF PIRSF006809 3 424 1.8E-142 T 16-09-2016 IPR016496 GTPase HflX GO:0005525 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 SUPERFAMILY SSF52540 199 365 4.37E-43 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 201 221 1.6E-12 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 222 240 1.6E-12 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.6E-12 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 PANTHER PTHR10229:SF0 1 415 1.1E-158 T 16-09-2016 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 Hamap MF_00900 GTPase HflX [hflX]. 27 394 46.582 T 16-09-2016 IPR016496 GTPase HflX GO:0005525 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 1.3E-30 T 16-09-2016 IPR025121 GTPase HflX, N-terminal BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 Pfam PF16360 GTP-binding GTPase Middle Region 114 193 1.1E-26 T 16-09-2016 IPR032305 GTP-binding protein, middle domain BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 Pfam PF01926 50S ribosome-binding GTPase 200 318 8.8E-22 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 PANTHER PTHR10229 1 415 1.1E-158 T 16-09-2016 IPR016496 GTPase HflX GO:0005525 BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 Gene3D G3DSA:3.40.50.300 198 365 5.4E-35 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11165 0526fde861ac4a03a99e5c10fb159042 439 SUPERFAMILY SSF54980 373 419 6.69E-5 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS12625 9a9fa1acc18601043c1f22ee11c8aba9 128 PANTHER PTHR30007 1 122 1.8E-20 T 16-09-2016 BER92_RS12625 9a9fa1acc18601043c1f22ee11c8aba9 128 Pfam PF01609 Transposase DDE domain 2 119 5.1E-12 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS12625 9a9fa1acc18601043c1f22ee11c8aba9 128 PANTHER PTHR30007:SF0 1 122 1.8E-20 T 16-09-2016 BER92_RS06895 7012933c54666e2fd5fc010294fc4140 211 SUPERFAMILY SSF47616 82 207 8.38E-24 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS06895 7012933c54666e2fd5fc010294fc4140 211 Gene3D G3DSA:3.40.30.10 7 100 7.1E-27 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS06895 7012933c54666e2fd5fc010294fc4140 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 13 87 1.6E-12 T 16-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BER92_RS06895 7012933c54666e2fd5fc010294fc4140 211 Gene3D G3DSA:1.20.1050.10 101 207 3.3E-12 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS06895 7012933c54666e2fd5fc010294fc4140 211 PANTHER PTHR11260 9 209 1.5E-104 T 16-09-2016 BER92_RS06895 7012933c54666e2fd5fc010294fc4140 211 Pfam PF00043 Glutathione S-transferase, C-terminal domain 121 193 5.0E-6 T 16-09-2016 IPR004046 Glutathione S-transferase, C-terminal BER92_RS06895 7012933c54666e2fd5fc010294fc4140 211 PANTHER PTHR11260:SF44 9 209 1.5E-104 T 16-09-2016 BER92_RS06895 7012933c54666e2fd5fc010294fc4140 211 SUPERFAMILY SSF52833 10 111 3.12E-21 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 PANTHER PTHR11465 7 489 0.0 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 PRINTS PR00067 Catalase signature 103 121 9.4E-66 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 PRINTS PR00067 Catalase signature 41 64 9.4E-66 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 PRINTS PR00067 Catalase signature 306 333 9.4E-66 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 PRINTS PR00067 Catalase signature 124 141 9.4E-66 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 PRINTS PR00067 Catalase signature 143 161 9.4E-66 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 PRINTS PR00067 Catalase signature 338 364 9.4E-66 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 ProSitePatterns PS00438 Catalase proximal active site signature. 64 80 - T 16-09-2016 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 Pfam PF00199 Catalase 28 405 4.5E-163 T 16-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 Gene3D G3DSA:2.40.180.10 24 375 7.1E-165 T 16-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 PANTHER PTHR11465:SF3 7 489 0.0 T 16-09-2016 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 PIRSF PIRSF038928 20 496 8.5E-174 T 16-09-2016 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 SUPERFAMILY SSF56634 23 495 7.02E-188 T 16-09-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 SMART SM01060 28 408 1.0E-242 T 16-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 351 359 - T 16-09-2016 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS18515 499d0b60cc2a255a7933eba338fd429b 507 Pfam PF06628 Catalase-related immune-responsive 430 488 3.2E-12 T 16-09-2016 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 PIRSF PIRSF039102 44 307 6.8E-81 T 16-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 Pfam PF07478 D-ala D-ala ligase C-terminus 109 303 1.4E-54 T 16-09-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 Gene3D G3DSA:3.30.1490.20 112 181 9.7E-21 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 Gene3D G3DSA:3.30.470.20 182 306 3.5E-45 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 Gene3D G3DSA:3.30.470.20 90 108 3.5E-45 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 SUPERFAMILY SSF56059 101 304 2.05E-52 T 16-09-2016 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 68 79 - T 16-09-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 Pfam PF01820 D-ala D-ala ligase N-terminus 7 91 8.5E-19 T 16-09-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 PANTHER PTHR23132 7 304 5.7E-88 T 16-09-2016 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 Gene3D G3DSA:3.40.50.20 7 89 1.1E-24 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 277 - T 16-09-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 7 306 3.6E-103 T 16-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 SUPERFAMILY SSF52440 7 101 6.33E-25 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS03785 fc1c7cd1461aaacb190a67568b82ee63 307 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 6 307 34.651 T 16-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS14120 5a473c8ca2b414accb836e7544405685 249 SUPERFAMILY SSF56281 11 216 1.19E-25 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS14120 5a473c8ca2b414accb836e7544405685 249 Pfam PF12706 Beta-lactamase superfamily domain 32 189 1.2E-13 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS14120 5a473c8ca2b414accb836e7544405685 249 SMART SM00849 19 192 0.0058 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS14120 5a473c8ca2b414accb836e7544405685 249 Gene3D G3DSA:3.60.15.10 9 185 2.6E-21 T 16-09-2016 IPR001279 Metallo-beta-lactamase BER92_RS16725 8c011199780bbaa74929877c25b20868 568 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 341 404 1.5E-12 T 16-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 63 125 1.2E-15 T 16-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 PANTHER PTHR11493:SF47 5 553 1.8E-248 T 16-09-2016 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 468 484 - T 16-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 SUPERFAMILY SSF56014 419 552 1.44E-32 T 16-09-2016 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 Gene3D G3DSA:3.30.413.10 422 550 5.0E-34 T 16-09-2016 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 Gene3D G3DSA:3.30.413.10 135 327 9.4E-63 T 16-09-2016 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 SUPERFAMILY SSF55124 334 410 1.13E-16 T 16-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 PRINTS PR00397 Sirohaem Fe-binding site signature 468 486 1.4E-8 T 16-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 PRINTS PR00397 Sirohaem Fe-binding site signature 420 438 1.4E-8 T 16-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 SUPERFAMILY SSF55124 4 134 1.28E-29 T 16-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 6 551 4.6E-265 T 16-09-2016 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 421 550 0.063 T 16-09-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 162 316 1.8E-42 T 16-09-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 1 563 55.301 T 16-09-2016 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 SUPERFAMILY SSF56014 135 332 1.57E-52 T 16-09-2016 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 PANTHER PTHR11493 5 553 1.8E-248 T 16-09-2016 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 Gene3D G3DSA:3.90.480.10 330 409 3.5E-55 T 16-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16725 8c011199780bbaa74929877c25b20868 568 Gene3D G3DSA:3.90.480.10 61 132 3.5E-55 T 16-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS00945 daa14a927a0482a1df3430793db44e1e 377 PANTHER PTHR21327:SF6 176 373 1.6E-78 T 16-09-2016 BER92_RS00945 daa14a927a0482a1df3430793db44e1e 377 PANTHER PTHR21327 176 373 1.6E-78 T 16-09-2016 BER92_RS00945 daa14a927a0482a1df3430793db44e1e 377 Pfam PF00925 GTP cyclohydrolase II 179 343 2.5E-51 T 16-09-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 BER92_RS00945 daa14a927a0482a1df3430793db44e1e 377 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 173 369 38.254 T 16-09-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 BER92_RS00945 daa14a927a0482a1df3430793db44e1e 377 PIRSF PIRSF001259 23 376 2.5E-88 T 16-09-2016 BER92_RS00945 daa14a927a0482a1df3430793db44e1e 377 SUPERFAMILY SSF142695 189 345 1.57E-48 T 16-09-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 BER92_RS04435 ee2ecfb694bf6521f3fbc163a916cd61 279 Pfam PF00535 Glycosyl transferase family 2 8 132 1.3E-19 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS04435 ee2ecfb694bf6521f3fbc163a916cd61 279 PANTHER PTHR22916:SF26 159 258 3.3E-32 T 16-09-2016 BER92_RS04435 ee2ecfb694bf6521f3fbc163a916cd61 279 PANTHER PTHR22916:SF26 5 142 3.3E-32 T 16-09-2016 BER92_RS04435 ee2ecfb694bf6521f3fbc163a916cd61 279 Gene3D G3DSA:3.90.550.10 9 244 1.8E-35 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS04435 ee2ecfb694bf6521f3fbc163a916cd61 279 SUPERFAMILY SSF53448 4 248 2.82E-43 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS04435 ee2ecfb694bf6521f3fbc163a916cd61 279 PANTHER PTHR22916 159 258 3.3E-32 T 16-09-2016 BER92_RS04435 ee2ecfb694bf6521f3fbc163a916cd61 279 PANTHER PTHR22916 5 142 3.3E-32 T 16-09-2016 BER92_RS03815 5b5535ccca6141799aad9c85bcd3b7ed 314 SUPERFAMILY SSF51261 70 301 1.26E-58 T 16-09-2016 IPR011055 Duplicated hybrid motif BER92_RS03815 5b5535ccca6141799aad9c85bcd3b7ed 314 PANTHER PTHR21666 178 303 1.5E-56 T 16-09-2016 BER92_RS03815 5b5535ccca6141799aad9c85bcd3b7ed 314 PANTHER PTHR21666:SF214 178 303 1.5E-56 T 16-09-2016 BER92_RS03815 5b5535ccca6141799aad9c85bcd3b7ed 314 Pfam PF01551 Peptidase family M23 203 297 2.9E-32 T 16-09-2016 IPR016047 Peptidase M23 BER92_RS03815 5b5535ccca6141799aad9c85bcd3b7ed 314 Gene3D G3DSA:2.70.70.10 166 302 2.1E-50 T 16-09-2016 BER92_RS08925 9a943fef8737b1e0c31d5c6bea6ca34d 99 Gene3D G3DSA:3.30.70.1060 2 97 8.9E-32 T 16-09-2016 BER92_RS08925 9a943fef8737b1e0c31d5c6bea6ca34d 99 SUPERFAMILY SSF54909 2 97 2.68E-28 T 16-09-2016 IPR011008 Dimeric alpha-beta barrel BER92_RS08925 9a943fef8737b1e0c31d5c6bea6ca34d 99 PANTHER PTHR33606 1 94 4.3E-26 T 16-09-2016 BER92_RS08925 9a943fef8737b1e0c31d5c6bea6ca34d 99 Pfam PF03795 YCII-related domain 2 94 1.0E-22 T 16-09-2016 IPR005545 YCII-related BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 Pfam PF12161 HsdM N-terminal domain 12 145 2.4E-22 T 16-09-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 PANTHER PTHR30408 160 487 2.3E-152 T 16-09-2016 BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 TIGRFAM TIGR00497 hsdM: type I restriction-modification system, M subunit 10 480 4.4E-80 T 16-09-2016 IPR004546 Restriction endonuclease, type I, HsdM GO:0003677|GO:0009007|GO:0009307 BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 Gene3D G3DSA:3.40.50.150 185 421 5.2E-37 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 Pfam PF02384 N-6 DNA Methylase 160 466 1.4E-103 T 16-09-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 286 292 - T 16-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 320 344 4.6E-15 T 16-09-2016 BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 183 199 4.6E-15 T 16-09-2016 BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 207 221 4.6E-15 T 16-09-2016 BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 283 295 4.6E-15 T 16-09-2016 BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 SUPERFAMILY SSF53335 10 502 7.23E-138 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS15455 b2f91bfc90d5be4f99d631e6d88da784 502 PANTHER PTHR30408:SF4 160 487 2.3E-152 T 16-09-2016 BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 SMART SM00450 208 303 8.7E-12 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 PANTHER PTHR10293 3 103 3.7E-57 T 16-09-2016 IPR004480 Monothiol glutaredoxin-related BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 SUPERFAMILY SSF52821 202 302 8.38E-21 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 Gene3D G3DSA:3.40.30.10 11 103 4.4E-30 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 SUPERFAMILY SSF89360 114 201 6.47E-11 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 9 103 3.9E-39 T 16-09-2016 IPR004480 Monothiol glutaredoxin-related BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 Pfam PF00581 Rhodanese-like domain 211 299 1.4E-7 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 SUPERFAMILY SSF52833 8 104 2.09E-30 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 Gene3D G3DSA:3.40.250.10 204 304 1.1E-20 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 Gene3D G3DSA:2.60.300.12 112 199 5.5E-6 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS03075 fe85f0a996f765631bff193105c503dc 308 Pfam PF00462 Glutaredoxin 20 84 3.6E-19 T 16-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BER92_RS08865 f7a1d2054a792c005397d2e28f262dee 149 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 140 31.372 T 16-09-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 BER92_RS08865 f7a1d2054a792c005397d2e28f262dee 149 Pfam PF03100 CcmE 5 130 2.5E-43 T 16-09-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 BER92_RS08865 f7a1d2054a792c005397d2e28f262dee 149 PANTHER PTHR34128:SF1 2 149 4.9E-63 T 16-09-2016 BER92_RS08865 f7a1d2054a792c005397d2e28f262dee 149 SUPERFAMILY SSF82093 30 136 3.79E-38 T 16-09-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 BER92_RS08865 f7a1d2054a792c005397d2e28f262dee 149 Gene3D G3DSA:2.40.50.140 27 124 1.9E-35 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08865 f7a1d2054a792c005397d2e28f262dee 149 PANTHER PTHR34128 2 149 4.9E-63 T 16-09-2016 BER92_RS16620 0d74e2130fd1c35b100c387bb757bc8e 200 PANTHER PTHR34219 17 128 9.7E-33 T 16-09-2016 BER92_RS16620 0d74e2130fd1c35b100c387bb757bc8e 200 Pfam PF11804 Protein of unknown function (DUF3325) 155 198 1.2E-9 T 16-09-2016 IPR021762 Protein of unknown function DUF3325 BER92_RS16620 0d74e2130fd1c35b100c387bb757bc8e 200 PANTHER PTHR34219:SF4 17 128 9.7E-33 T 16-09-2016 BER92_RS19155 c44ee014b5882860ef2ffa46cc50ca6d 289 Pfam PF13276 HTH-like domain 46 97 2.6E-10 T 16-09-2016 IPR025948 HTH-like domain BER92_RS19155 c44ee014b5882860ef2ffa46cc50ca6d 289 PANTHER PTHR24559 28 123 8.4E-89 T 16-09-2016 BER92_RS19155 c44ee014b5882860ef2ffa46cc50ca6d 289 SUPERFAMILY SSF53098 190 276 5.46E-20 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS19155 c44ee014b5882860ef2ffa46cc50ca6d 289 Gene3D G3DSA:3.30.420.10 190 273 8.9E-21 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS19155 c44ee014b5882860ef2ffa46cc50ca6d 289 Pfam PF13683 Integrase core domain 207 272 4.5E-28 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS19155 c44ee014b5882860ef2ffa46cc50ca6d 289 PANTHER PTHR24559:SF185 189 286 8.4E-89 T 16-09-2016 BER92_RS19155 c44ee014b5882860ef2ffa46cc50ca6d 289 PANTHER PTHR24559:SF185 28 123 8.4E-89 T 16-09-2016 BER92_RS19155 c44ee014b5882860ef2ffa46cc50ca6d 289 PANTHER PTHR24559 189 286 8.4E-89 T 16-09-2016 BER92_RS12805 3e8d51490105fab75ca4f6ef7edd609a 258 PANTHER PTHR21342 209 258 7.8E-37 T 16-09-2016 BER92_RS12805 3e8d51490105fab75ca4f6ef7edd609a 258 PANTHER PTHR21342 33 185 7.8E-37 T 16-09-2016 BER92_RS12805 3e8d51490105fab75ca4f6ef7edd609a 258 Gene3D G3DSA:3.40.50.620 42 253 1.9E-52 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS12805 3e8d51490105fab75ca4f6ef7edd609a 258 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 38 252 25.642 T 16-09-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 BER92_RS12805 3e8d51490105fab75ca4f6ef7edd609a 258 Pfam PF01467 Cytidylyltransferase-like 42 225 5.5E-26 T 16-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BER92_RS12805 3e8d51490105fab75ca4f6ef7edd609a 258 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 43 251 2.6E-39 T 16-09-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 BER92_RS12805 3e8d51490105fab75ca4f6ef7edd609a 258 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 42 100 1.9E-10 T 16-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BER92_RS12805 3e8d51490105fab75ca4f6ef7edd609a 258 SUPERFAMILY SSF52374 41 252 1.13E-43 T 16-09-2016 BER92_RS09470 519e9847cb0abdd4c1f147132f1a32c4 196 Pfam PF03975 CheD chemotactic sensory transduction 66 165 1.2E-33 T 16-09-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 BER92_RS09470 519e9847cb0abdd4c1f147132f1a32c4 196 PANTHER PTHR35147 1 195 3.6E-103 T 16-09-2016 BER92_RS09470 519e9847cb0abdd4c1f147132f1a32c4 196 PANTHER PTHR35147:SF2 1 195 3.6E-103 T 16-09-2016 BER92_RS09470 519e9847cb0abdd4c1f147132f1a32c4 196 SUPERFAMILY SSF64438 24 170 3.3E-51 T 16-09-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic BER92_RS09470 519e9847cb0abdd4c1f147132f1a32c4 196 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 18 169 29.882 T 16-09-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 BER92_RS15280 296490fcb315e680cb613f7ae81d9109 335 SUPERFAMILY SSF53659 1 335 5.57E-123 T 16-09-2016 BER92_RS15280 296490fcb315e680cb613f7ae81d9109 335 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 227 246 - T 16-09-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 BER92_RS15280 296490fcb315e680cb613f7ae81d9109 335 Gene3D G3DSA:3.40.718.10 2 335 1.3E-132 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS15280 296490fcb315e680cb613f7ae81d9109 335 PANTHER PTHR11835 2 335 1.5E-171 T 16-09-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 BER92_RS15280 296490fcb315e680cb613f7ae81d9109 335 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 325 5.3E-105 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS15280 296490fcb315e680cb613f7ae81d9109 335 SMART SM01329 4 331 5.7E-177 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 Gene3D G3DSA:4.10.950.10 196 274 2.8E-33 T 16-09-2016 IPR014726 Ribosomal protein L2, domain 3 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 Gene3D G3DSA:2.30.30.30 119 195 1.4E-32 T 16-09-2016 IPR014722 Ribosomal protein L2 domain 2 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 16-09-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 Gene3D G3DSA:2.40.50.140 1 114 2.2E-47 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 274 1.9E-129 T 16-09-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 SUPERFAMILY SSF50249 3 125 1.54E-46 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.6E-32 T 16-09-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 251 2.3E-54 T 16-09-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 SMART SM01383 42 118 2.1E-41 T 16-09-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 PIRSF PIRSF002158 6 275 1.9E-96 T 16-09-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 SUPERFAMILY SSF50104 127 273 1.81E-57 T 16-09-2016 IPR008991 Translation protein SH3-like domain BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 SMART SM01382 124 253 1.0E-88 T 16-09-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 274 46.607 T 16-09-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 BER92_RS05180 b3f657c3501ce04b986597e355739afd 275 PANTHER PTHR13691 1 273 1.2E-139 T 16-09-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS02120 4f8aeece2145d54aadaede423701d3f3 338 Gene3D G3DSA:3.40.47.10 4 187 8.2E-36 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS02120 4f8aeece2145d54aadaede423701d3f3 338 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 253 333 1.6E-18 T 16-09-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 BER92_RS02120 4f8aeece2145d54aadaede423701d3f3 338 PANTHER PTHR34069:SF2 180 338 3.6E-58 T 16-09-2016 BER92_RS02120 4f8aeece2145d54aadaede423701d3f3 338 PANTHER PTHR34069:SF2 2 164 3.6E-58 T 16-09-2016 BER92_RS02120 4f8aeece2145d54aadaede423701d3f3 338 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 117 195 1.4E-7 T 16-09-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 BER92_RS02120 4f8aeece2145d54aadaede423701d3f3 338 PANTHER PTHR34069 180 338 3.6E-58 T 16-09-2016 BER92_RS02120 4f8aeece2145d54aadaede423701d3f3 338 PANTHER PTHR34069 2 164 3.6E-58 T 16-09-2016 BER92_RS02120 4f8aeece2145d54aadaede423701d3f3 338 SUPERFAMILY SSF53901 46 338 8.73E-41 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS02120 4f8aeece2145d54aadaede423701d3f3 338 Gene3D G3DSA:3.40.47.10 188 338 4.5E-28 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS02715 7d9375e54738503b6c0194f6ce335f77 253 PANTHER PTHR10108 10 253 7.8E-161 T 16-09-2016 BER92_RS02715 7d9375e54738503b6c0194f6ce335f77 253 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 160 174 - T 16-09-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 BER92_RS02715 7d9375e54738503b6c0194f6ce335f77 253 PANTHER PTHR10108:SF864 10 253 7.8E-161 T 16-09-2016 BER92_RS02715 7d9375e54738503b6c0194f6ce335f77 253 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 27 252 3.0E-80 T 16-09-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 BER92_RS02715 7d9375e54738503b6c0194f6ce335f77 253 Gene3D G3DSA:3.40.50.150 27 248 2.0E-53 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS02715 7d9375e54738503b6c0194f6ce335f77 253 SUPERFAMILY SSF53335 22 249 1.33E-43 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS02715 7d9375e54738503b6c0194f6ce335f77 253 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 38 53 - T 16-09-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 BER92_RS02715 7d9375e54738503b6c0194f6ce335f77 253 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 18 252 37.95 T 16-09-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 BER92_RS02715 7d9375e54738503b6c0194f6ce335f77 253 Pfam PF01209 ubiE/COQ5 methyltransferase family 23 252 9.2E-90 T 16-09-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 BER92_RS18665 a30de9502c2df618838c7d9d704702ae 190 SMART SM00867 25 185 1.4E-18 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS18665 a30de9502c2df618838c7d9d704702ae 190 SUPERFAMILY SSF101874 26 185 5.49E-27 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS18665 a30de9502c2df618838c7d9d704702ae 190 Pfam PF04264 YceI-like domain 28 181 1.7E-19 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS18665 a30de9502c2df618838c7d9d704702ae 190 PANTHER PTHR34406:SF1 4 190 1.3E-45 T 16-09-2016 BER92_RS18665 a30de9502c2df618838c7d9d704702ae 190 Gene3D G3DSA:2.40.128.110 27 188 3.3E-30 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS18665 a30de9502c2df618838c7d9d704702ae 190 PANTHER PTHR34406 4 190 1.3E-45 T 16-09-2016 BER92_RS08440 a5cf640be355108c1abebfc2afd3e192 112 Gene3D G3DSA:2.60.300.12 2 96 6.7E-28 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS08440 a5cf640be355108c1abebfc2afd3e192 112 PANTHER PTHR10072:SF48 1 111 6.2E-45 T 16-09-2016 IPR031108 FeS assembly protein IscA-like GO:0005198|GO:0016226|GO:0051536 BER92_RS08440 a5cf640be355108c1abebfc2afd3e192 112 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.4E-16 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS08440 a5cf640be355108c1abebfc2afd3e192 112 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 16-09-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site BER92_RS08440 a5cf640be355108c1abebfc2afd3e192 112 PANTHER PTHR10072 1 111 6.2E-45 T 16-09-2016 BER92_RS08440 a5cf640be355108c1abebfc2afd3e192 112 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 106 1.6E-31 T 16-09-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 BER92_RS08440 a5cf640be355108c1abebfc2afd3e192 112 SUPERFAMILY SSF89360 1 96 2.88E-27 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS03080 60570a3b28d00dcae939db11342bf5e4 258 PANTHER PTHR10587:SF71 37 251 3.8E-45 T 16-09-2016 BER92_RS03080 60570a3b28d00dcae939db11342bf5e4 258 Gene3D G3DSA:3.20.20.370 60 251 6.6E-46 T 16-09-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 BER92_RS03080 60570a3b28d00dcae939db11342bf5e4 258 PANTHER PTHR10587 37 251 3.8E-45 T 16-09-2016 BER92_RS03080 60570a3b28d00dcae939db11342bf5e4 258 Pfam PF01522 Polysaccharide deacetylase 75 193 8.0E-29 T 16-09-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 BER92_RS03080 60570a3b28d00dcae939db11342bf5e4 258 SUPERFAMILY SSF88713 66 252 1.85E-48 T 16-09-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 PANTHER PTHR11902 1 423 2.1E-257 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 Hamap MF_00318 Enolase [eno]. 2 413 44.235 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 PIRSF PIRSF001400 1 427 5.9E-186 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 Gene3D G3DSA:3.30.390.10 3 126 7.5E-53 T 16-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 Gene3D G3DSA:3.20.20.120 129 426 9.9E-132 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 SMART SM01192 141 427 5.9E-219 T 16-09-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 ProSitePatterns PS00164 Enolase signature. 336 349 - T 16-09-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 SUPERFAMILY SSF54826 3 137 6.14E-54 T 16-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 Pfam PF00113 Enolase, C-terminal TIM barrel domain 142 425 1.4E-132 T 16-09-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 PRINTS PR00148 Enolase signature 365 382 2.8E-45 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 PRINTS PR00148 Enolase signature 37 51 2.8E-45 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 PRINTS PR00148 Enolase signature 107 123 2.8E-45 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 PRINTS PR00148 Enolase signature 313 324 2.8E-45 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 PRINTS PR00148 Enolase signature 336 350 2.8E-45 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 PRINTS PR00148 Enolase signature 163 176 2.8E-45 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 Pfam PF03952 Enolase, N-terminal domain 4 134 2.4E-56 T 16-09-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 SUPERFAMILY SSF51604 142 426 3.54E-127 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 SMART SM01193 4 134 1.7E-90 T 16-09-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 BER92_RS08745 070c7182eefb251dc3caa60265b4b36d 430 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 427 6.1E-203 T 16-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS14845 bde895de9c079f0d21d2ceb570a5275c 89 SUPERFAMILY SSF46992 3 86 1.83E-29 T 16-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14845 bde895de9c079f0d21d2ceb570a5275c 89 Gene3D G3DSA:1.20.58.110 3 87 1.2E-28 T 16-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14845 bde895de9c079f0d21d2ceb570a5275c 89 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.048 T 16-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14845 bde895de9c079f0d21d2ceb570a5275c 89 Pfam PF01649 Ribosomal protein S20 2 84 1.7E-26 T 16-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14845 bde895de9c079f0d21d2ceb570a5275c 89 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 86 3.6E-28 T 16-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14845 bde895de9c079f0d21d2ceb570a5275c 89 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 89 3.0E-25 T 16-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14845 bde895de9c079f0d21d2ceb570a5275c 89 PANTHER PTHR33398 2 89 4.6E-35 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 SUPERFAMILY SSF51905 137 477 4.37E-61 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 Gene3D G3DSA:3.50.50.60 139 276 2.0E-38 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 163 4.9E-69 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 284 4.9E-69 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 404 418 4.9E-69 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 482 503 4.9E-69 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 569 589 4.9E-69 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 189 4.9E-69 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 547 562 4.9E-69 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 447 454 4.9E-69 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 311 336 4.9E-69 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PANTHER PTHR22912:SF160 126 598 4.5E-253 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 141 467 5.1E-68 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 SUPERFAMILY SSF51230 2 96 1.21E-22 T 16-09-2016 IPR011053 Single hybrid motif BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 486 594 1.3E-34 T 16-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 Gene3D G3DSA:3.30.390.30 474 601 2.9E-44 T 16-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PANTHER PTHR22912 126 598 4.5E-253 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 141 598 2.1E-153 T 16-09-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 Pfam PF00364 Biotin-requiring enzyme 5 74 1.3E-19 T 16-09-2016 IPR000089 Biotin/lipoyl attachment BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 403 419 6.8E-40 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 142 161 6.8E-40 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 290 6.8E-40 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 432 454 6.8E-40 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 311 329 6.8E-40 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 16-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 175 185 - T 16-09-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 Gene3D G3DSA:2.40.50.100 4 80 5.3E-21 T 16-09-2016 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 Gene3D G3DSA:3.50.50.60 277 473 6.0E-55 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS15940 5a28d801a62e91955a86af5bcd41a15d 611 SUPERFAMILY SSF55424 484 605 4.47E-38 T 16-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 BER92_RS02270 e094d8c34d52495615c9fb572aa0c3ce 317 Gene3D G3DSA:1.10.3720.10 37 306 8.1E-47 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS02270 e094d8c34d52495615c9fb572aa0c3ce 317 PANTHER PTHR30406:SF1 4 314 3.8E-174 T 16-09-2016 BER92_RS02270 e094d8c34d52495615c9fb572aa0c3ce 317 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 34 306 3.2E-85 T 16-09-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 BER92_RS02270 e094d8c34d52495615c9fb572aa0c3ce 317 PANTHER PTHR30406 4 314 3.8E-174 T 16-09-2016 BER92_RS02270 e094d8c34d52495615c9fb572aa0c3ce 317 SUPERFAMILY SSF161098 33 300 2.43E-51 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS02270 e094d8c34d52495615c9fb572aa0c3ce 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 304 2.0E-13 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS02270 e094d8c34d52495615c9fb572aa0c3ce 317 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 35 308 8.1E-120 T 16-09-2016 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 Gene3D G3DSA:1.10.530.10 172 207 2.2E-4 T 16-09-2016 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 Gene3D G3DSA:1.10.530.10 114 127 2.2E-4 T 16-09-2016 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 SUPERFAMILY SSF53955 10 326 1.72E-91 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 Pfam PF13406 Transglycosylase SLT domain 25 320 7.5E-97 T 16-09-2016 IPR031304 Transglycosylase SLT domain 2 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 Pfam PF01471 Putative peptidoglycan binding domain 342 397 1.5E-7 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 SUPERFAMILY SSF47090 328 398 4.32E-13 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 24 323 4.7E-110 T 16-09-2016 IPR011970 Lytic murein transglycosylase BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 Pfam PF01263 Aldose 1-epimerase 457 716 2.2E-38 T 16-09-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 Gene3D G3DSA:1.10.530.10 208 325 2.6E-52 T 16-09-2016 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 Gene3D G3DSA:1.10.530.10 68 113 2.6E-52 T 16-09-2016 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 Gene3D G3DSA:1.10.101.10 336 400 1.1E-8 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 PANTHER PTHR30163:SF4 21 413 7.0E-250 T 16-09-2016 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 SUPERFAMILY SSF74650 442 718 5.34E-60 T 16-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 Gene3D G3DSA:2.70.98.10 446 718 7.1E-73 T 16-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 BER92_RS19070 899f162252a5fc073e759a4c5fff0353 721 PANTHER PTHR30163 21 413 7.0E-250 T 16-09-2016 IPR011757 Lytic transglycosylase MltB BER92_RS08885 1357d6d9a983b2a964e9d749ef59bcff 214 SUPERFAMILY SSF52540 10 211 4.4E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08885 1357d6d9a983b2a964e9d749ef59bcff 214 SMART SM00382 36 213 7.2E-6 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS08885 1357d6d9a983b2a964e9d749ef59bcff 214 Pfam PF00005 ABC transporter 30 165 1.6E-24 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS08885 1357d6d9a983b2a964e9d749ef59bcff 214 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 12 204 1.1E-68 T 16-09-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 BER92_RS08885 1357d6d9a983b2a964e9d749ef59bcff 214 PANTHER PTHR24220 13 195 4.3E-85 T 16-09-2016 BER92_RS08885 1357d6d9a983b2a964e9d749ef59bcff 214 PANTHER PTHR24220:SF508 13 195 4.3E-85 T 16-09-2016 BER92_RS08885 1357d6d9a983b2a964e9d749ef59bcff 214 Gene3D G3DSA:3.40.50.300 9 210 1.0E-37 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08885 1357d6d9a983b2a964e9d749ef59bcff 214 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS16360 ecb4a798698ab6ee0c283fa44f97f22e 508 Pfam PF00589 Phage integrase family 279 436 4.7E-9 T 16-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS16360 ecb4a798698ab6ee0c283fa44f97f22e 508 Gene3D G3DSA:1.10.443.10 264 436 5.8E-13 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS16360 ecb4a798698ab6ee0c283fa44f97f22e 508 SUPERFAMILY SSF56349 215 436 1.65E-27 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS16360 ecb4a798698ab6ee0c283fa44f97f22e 508 SUPERFAMILY SSF56349 130 186 1.65E-27 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS09330 5900c7f5d0ce8eb6570f3766710c9449 82 Pfam PF04023 FeoA domain 1 76 3.7E-18 T 16-09-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BER92_RS09330 5900c7f5d0ce8eb6570f3766710c9449 82 PANTHER PTHR33238 1 81 3.7E-19 T 16-09-2016 BER92_RS09330 5900c7f5d0ce8eb6570f3766710c9449 82 SUPERFAMILY SSF50037 3 76 1.58E-13 T 16-09-2016 IPR008988 Transcriptional repressor, C-terminal BER92_RS09330 5900c7f5d0ce8eb6570f3766710c9449 82 SMART SM00899 1 77 1.9E-17 T 16-09-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BER92_RS01750 6f1ba38b523489675e94fcb9233b9ab6 398 Gene3D G3DSA:3.40.47.10 253 397 1.1E-50 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS01750 6f1ba38b523489675e94fcb9233b9ab6 398 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 16-09-2016 IPR018201 Beta-ketoacyl synthase, active site BER92_RS01750 6f1ba38b523489675e94fcb9233b9ab6 398 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 72 237 5.8E-20 T 16-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal BER92_RS01750 6f1ba38b523489675e94fcb9233b9ab6 398 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 249 355 1.7E-29 T 16-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal BER92_RS01750 6f1ba38b523489675e94fcb9233b9ab6 398 SUPERFAMILY SSF53901 1 240 4.66E-31 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS01750 6f1ba38b523489675e94fcb9233b9ab6 398 SUPERFAMILY SSF53901 211 397 3.78E-48 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS01750 6f1ba38b523489675e94fcb9233b9ab6 398 Gene3D G3DSA:3.40.47.10 2 240 1.7E-27 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS01750 6f1ba38b523489675e94fcb9233b9ab6 398 SMART SM00825 Beta-ketoacyl synthase 4 398 1.5E-8 T 16-09-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER92_RS01750 6f1ba38b523489675e94fcb9233b9ab6 398 PANTHER PTHR11712 152 398 8.8E-61 T 16-09-2016 BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 Gene3D G3DSA:1.10.357.10 72 218 1.5E-35 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 Gene3D G3DSA:1.10.10.60 18 71 1.9E-21 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 73 7.7E-16 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 1.7E-11 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 1.7E-11 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 SUPERFAMILY SSF46689 18 84 2.19E-18 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 162 216 3.2E-16 T 16-09-2016 BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 SUPERFAMILY SSF48498 94 218 7.29E-5 T 16-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 PANTHER PTHR30055 10 218 1.2E-44 T 16-09-2016 BER92_RS03285 bf32ea28331fa00d410973f29f618a89 219 PANTHER PTHR30055:SF27 10 218 1.2E-44 T 16-09-2016 BER92_RS15780 bf20b3f0f65ead6b831d98c91720e49a 42 Pfam PF01527 Transposase 6 42 1.8E-10 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS15780 bf20b3f0f65ead6b831d98c91720e49a 42 SUPERFAMILY SSF46689 5 42 1.06E-8 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS15780 bf20b3f0f65ead6b831d98c91720e49a 42 Gene3D G3DSA:1.10.10.60 9 42 1.2E-7 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10600 70ae57079d9b760af2dfa65b691c2a51 452 Pfam PF05598 Transposase domain (DUF772) 56 130 2.3E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS10600 70ae57079d9b760af2dfa65b691c2a51 452 Pfam PF01609 Transposase DDE domain 281 418 8.2E-8 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10600 70ae57079d9b760af2dfa65b691c2a51 452 PANTHER PTHR33803:SF1 1 452 0.0 T 16-09-2016 BER92_RS10600 70ae57079d9b760af2dfa65b691c2a51 452 PANTHER PTHR33803 1 452 0.0 T 16-09-2016 BER92_RS13190 9355c10efc831fa0e1cead3383b3d3f6 164 PANTHER PTHR33202:SF6 4 164 5.3E-79 T 16-09-2016 BER92_RS13190 9355c10efc831fa0e1cead3383b3d3f6 164 PANTHER PTHR33202 4 164 5.3E-79 T 16-09-2016 BER92_RS13190 9355c10efc831fa0e1cead3383b3d3f6 164 SUPERFAMILY SSF46785 26 158 5.81E-27 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS13190 9355c10efc831fa0e1cead3383b3d3f6 164 Pfam PF01475 Ferric uptake regulator family 31 153 4.0E-10 T 16-09-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 BER92_RS13190 9355c10efc831fa0e1cead3383b3d3f6 164 Gene3D G3DSA:1.10.10.10 25 94 5.5E-9 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS10250 b39decf1742b61bd28172b3324fec5c1 135 PANTHER PTHR30435:SF2 1 135 2.0E-59 T 16-09-2016 BER92_RS10250 b39decf1742b61bd28172b3324fec5c1 135 PANTHER PTHR30435 1 135 2.0E-59 T 16-09-2016 BER92_RS10250 b39decf1742b61bd28172b3324fec5c1 135 Pfam PF00460 Flagella basal body rod protein 7 36 7.5E-9 T 16-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BER92_RS10250 b39decf1742b61bd28172b3324fec5c1 135 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 6 135 8.3E-44 T 16-09-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 BER92_RS10250 b39decf1742b61bd28172b3324fec5c1 135 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 16-09-2016 IPR019776 Flagellar basal body rod protein, conserved site BER92_RS10250 b39decf1742b61bd28172b3324fec5c1 135 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 88 131 4.5E-10 T 16-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER92_RS12540 4cfd6b4cbc7e7e26f113b375abbee6e4 322 PANTHER PTHR19372:SF1 49 317 7.5E-146 T 16-09-2016 BER92_RS12540 4cfd6b4cbc7e7e26f113b375abbee6e4 322 Hamap MF_01206 Sulfoxide reductase catalytic subunit YedY [yedY]. 3 322 59.111 T 16-09-2016 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 BER92_RS12540 4cfd6b4cbc7e7e26f113b375abbee6e4 322 Pfam PF00174 Oxidoreductase molybdopterin binding domain 99 254 1.2E-30 T 16-09-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 BER92_RS12540 4cfd6b4cbc7e7e26f113b375abbee6e4 322 Gene3D G3DSA:3.90.420.10 67 319 2.9E-73 T 16-09-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 BER92_RS12540 4cfd6b4cbc7e7e26f113b375abbee6e4 322 PANTHER PTHR19372 49 317 7.5E-146 T 16-09-2016 BER92_RS12540 4cfd6b4cbc7e7e26f113b375abbee6e4 322 SUPERFAMILY SSF56524 67 318 1.22E-90 T 16-09-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 BER92_RS05790 0a808edff04ad313882efbca819471c9 350 Pfam PF00535 Glycosyl transferase family 2 19 174 1.3E-24 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS05790 0a808edff04ad313882efbca819471c9 350 SUPERFAMILY SSF53448 18 285 3.0E-33 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS05790 0a808edff04ad313882efbca819471c9 350 PANTHER PTHR10859 3 348 3.5E-135 T 16-09-2016 BER92_RS05790 0a808edff04ad313882efbca819471c9 350 PANTHER PTHR10859:SF86 3 348 3.5E-135 T 16-09-2016 BER92_RS05790 0a808edff04ad313882efbca819471c9 350 Gene3D G3DSA:3.90.550.10 17 153 7.1E-16 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SMART SM00091 404 470 6.2E-5 T 16-09-2016 IPR000014 PAS domain BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SMART SM00091 280 351 1.3E-4 T 16-09-2016 IPR000014 PAS domain BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 Gene3D G3DSA:3.30.450.20 35 153 3.7E-10 T 16-09-2016 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SMART SM00086 226 268 5.0E-9 T 16-09-2016 IPR001610 PAC motif BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SMART SM00086 475 518 3.4E-5 T 16-09-2016 IPR001610 PAC motif BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SMART SM00086 100 144 280.0 T 16-09-2016 IPR001610 PAC motif BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SMART SM00086 356 399 0.019 T 16-09-2016 IPR001610 PAC motif BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 PANTHER PTHR24423:SF565 402 639 7.8E-39 T 16-09-2016 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 PANTHER PTHR24423:SF565 124 283 7.8E-39 T 16-09-2016 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 Gene3D G3DSA:3.30.450.20 154 266 4.1E-17 T 16-09-2016 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 Gene3D G3DSA:3.30.450.20 272 395 9.4E-26 T 16-09-2016 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 Gene3D G3DSA:3.30.450.20 398 515 4.1E-25 T 16-09-2016 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 202 272 6.4E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 276 405 1.5E-13 T 16-09-2016 IPR000014 PAS domain BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 405 523 2.4E-9 T 16-09-2016 IPR000014 PAS domain BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 PANTHER PTHR24423 124 283 7.8E-39 T 16-09-2016 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SUPERFAMILY SSF55785 409 520 6.28E-17 T 16-09-2016 IPR000014 PAS domain BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SUPERFAMILY SSF55785 47 153 1.64E-5 T 16-09-2016 IPR000014 PAS domain BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 PANTHER PTHR24423 402 639 7.8E-39 T 16-09-2016 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SUPERFAMILY SSF55785 265 395 5.76E-20 T 16-09-2016 IPR000014 PAS domain BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 Pfam PF08447 PAS fold 200 261 2.8E-10 T 16-09-2016 IPR013655 PAS fold-3 GO:0005515 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 Pfam PF08447 PAS fold 429 511 1.2E-16 T 16-09-2016 IPR013655 PAS fold-3 GO:0005515 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 Pfam PF08447 PAS fold 304 390 6.0E-16 T 16-09-2016 IPR013655 PAS fold-3 GO:0005515 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 Pfam PF07536 HWE histidine kinase 531 612 2.7E-17 T 16-09-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SMART SM00911 531 613 8.2E-23 T 16-09-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 BER92_RS07570 6da2a09de6ff331d6177bd0297550fa5 734 SUPERFAMILY SSF55785 141 266 4.71E-15 T 16-09-2016 IPR000014 PAS domain BER92_RS17620 f4f29140fbb101490010e28a295daebe 312 PANTHER PTHR30503 2 308 2.6E-95 T 16-09-2016 BER92_RS17620 f4f29140fbb101490010e28a295daebe 312 Pfam PF05661 Protein of unknown function (DUF808) 4 297 1.6E-110 T 16-09-2016 IPR008526 Inner membrane protein YedI BER92_RS17620 f4f29140fbb101490010e28a295daebe 312 PIRSF PIRSF016660 1 311 7.8E-112 T 16-09-2016 IPR008526 Inner membrane protein YedI BER92_RS00780 dea381434649fdd3b831cdadda321250 280 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 10 280 7.3E-106 T 16-09-2016 IPR009228 Capsid scaffolding protein GpO GO:0019069 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 31 761 4.0E-287 T 16-09-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 PIRSF PIRSF002799 3 795 5.6E-280 T 16-09-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 SUPERFAMILY SSF56601 380 767 4.17E-99 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 SUPERFAMILY SSF56601 328 350 4.17E-99 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 PANTHER PTHR32282 159 812 7.8E-276 T 16-09-2016 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 Pfam PF00912 Transglycosylase 168 346 7.2E-53 T 16-09-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 Gene3D G3DSA:3.40.710.10 349 735 9.9E-93 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 Gene3D G3DSA:3.30.2060.10 76 162 3.9E-13 T 16-09-2016 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 Pfam PF14814 Bifunctional transglycosylase second domain 76 160 1.2E-19 T 16-09-2016 IPR028166 Bifunctional transglycosylase second domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 Pfam PF00905 Penicillin binding protein transpeptidase domain 441 692 1.6E-17 T 16-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 Gene3D G3DSA:1.10.3810.10 171 348 3.4E-56 T 16-09-2016 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 PANTHER PTHR32282:SF11 159 812 7.8E-276 T 16-09-2016 BER92_RS04135 5caa7dd072bf3637a5e978e5641af42c 814 SUPERFAMILY SSF53955 167 368 2.5E-57 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 Pfam PF00285 Citrate synthase, C-terminal domain 47 412 2.8E-136 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 PIRSF PIRSF001369 38 429 1.1E-162 T 16-09-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 ProSitePatterns PS00480 Citrate synthase signature. 304 316 - T 16-09-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 Gene3D G3DSA:1.10.230.10 282 374 4.0E-41 T 16-09-2016 IPR016143 Citrate synthase-like, small alpha subdomain BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 SUPERFAMILY SSF48256 8 429 2.75E-167 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 14 423 1.7E-208 T 16-09-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 PANTHER PTHR11739 37 429 3.1E-204 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 Gene3D G3DSA:1.10.580.10 53 281 1.4E-99 T 16-09-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 PRINTS PR00143 Citrate synthase signature 297 317 1.7E-54 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 PRINTS PR00143 Citrate synthase signature 380 394 1.7E-54 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 PRINTS PR00143 Citrate synthase signature 220 235 1.7E-54 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 PRINTS PR00143 Citrate synthase signature 166 179 1.7E-54 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 PRINTS PR00143 Citrate synthase signature 360 376 1.7E-54 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS03620 e11267230f3361d01b66c42e9066295a 429 PRINTS PR00143 Citrate synthase signature 242 270 1.7E-54 T 16-09-2016 IPR002020 Citrate synthase GO:0046912 BER92_RS15505 0a4b31652b1a18af7ad5d2768210307e 161 SUPERFAMILY SSF55729 13 154 2.03E-36 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS15505 0a4b31652b1a18af7ad5d2768210307e 161 PANTHER PTHR23091:SF247 9 155 7.1E-36 T 16-09-2016 BER92_RS15505 0a4b31652b1a18af7ad5d2768210307e 161 Gene3D G3DSA:3.40.630.30 8 142 6.2E-36 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS15505 0a4b31652b1a18af7ad5d2768210307e 161 Pfam PF00583 Acetyltransferase (GNAT) family 55 129 6.0E-14 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS15505 0a4b31652b1a18af7ad5d2768210307e 161 PANTHER PTHR23091 9 155 7.1E-36 T 16-09-2016 BER92_RS15505 0a4b31652b1a18af7ad5d2768210307e 161 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 20 151 1.1E-42 T 16-09-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 16-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 PANTHER PTHR11946 3 647 3.6E-212 T 16-09-2016 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 568 691 1.8E-36 T 16-09-2016 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 Gene3D G3DSA:3.40.50.620 180 379 1.5E-74 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS12190 b64366593a736f4674403e7a776f126c 692 Gene3D G3DSA:3.40.50.620 5 141 1.5E-74 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS12190 b64366593a736f4674403e7a776f126c 692 SUPERFAMILY SSF52374 173 386 5.88E-88 T 16-09-2016 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 SUPERFAMILY SSF52374 4 138 5.88E-88 T 16-09-2016 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 SUPERFAMILY SSF50249 585 691 2.2E-27 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS12190 b64366593a736f4674403e7a776f126c 692 SUPERFAMILY SSF47323 388 546 1.46E-40 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 535 3.6E-157 T 16-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 Pfam PF09334 tRNA synthetases class I (M) 6 395 1.3E-147 T 16-09-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 Gene3D G3DSA:2.40.50.140 585 691 2.9E-37 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS12190 b64366593a736f4674403e7a776f126c 692 SUPERFAMILY SSF57770 139 173 6.02E-12 T 16-09-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 Gene3D G3DSA:2.20.28.20 142 173 5.9E-18 T 16-09-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 Gene3D G3DSA:1.10.730.10 380 534 7.7E-39 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 PANTHER PTHR11946:SF86 3 647 3.6E-212 T 16-09-2016 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 PRINTS PR01041 Methionyl-tRNA synthetase signature 383 394 8.6E-25 T 16-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 8.6E-25 T 16-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 PRINTS PR01041 Methionyl-tRNA synthetase signature 289 304 8.6E-25 T 16-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 PRINTS PR01041 Methionyl-tRNA synthetase signature 250 261 8.6E-25 T 16-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 8.6E-25 T 16-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 8.6E-25 T 16-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 545 38.228 T 16-09-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BER92_RS12190 b64366593a736f4674403e7a776f126c 692 Pfam PF01588 Putative tRNA binding domain 595 689 5.1E-20 T 16-09-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 BER92_RS17410 e66390b4c521592e520605598b21841a 306 Pfam PF01039 Carboxyl transferase domain 17 197 3.6E-20 T 16-09-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS17410 e66390b4c521592e520605598b21841a 306 PANTHER PTHR22855:SF21 1 237 7.8E-85 T 16-09-2016 BER92_RS17410 e66390b4c521592e520605598b21841a 306 TIGRFAM TIGR03133 malonate_beta: biotin-independent malonate decarboxylase, beta subunit 10 279 1.8E-113 T 16-09-2016 IPR017556 Biotin-independent malonate decarboxylase, beta subunit GO:0016831|GO:0044262 MetaCyc: PWY-6060 BER92_RS17410 e66390b4c521592e520605598b21841a 306 PANTHER PTHR22855 1 237 7.8E-85 T 16-09-2016 BER92_RS17410 e66390b4c521592e520605598b21841a 306 Gene3D G3DSA:3.90.226.10 14 198 8.0E-32 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS17410 e66390b4c521592e520605598b21841a 306 SUPERFAMILY SSF52096 8 192 2.37E-35 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS19125 46ee505380929c58c59cb17accc1619c 209 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 21 204 38.701 T 16-09-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 BER92_RS19125 46ee505380929c58c59cb17accc1619c 209 SUPERFAMILY SSF55620 13 204 8.89E-74 T 16-09-2016 BER92_RS19125 46ee505380929c58c59cb17accc1619c 209 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 26 203 1.4E-65 T 16-09-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 BER92_RS19125 46ee505380929c58c59cb17accc1619c 209 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 83 99 - T 16-09-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 BER92_RS19125 46ee505380929c58c59cb17accc1619c 209 Gene3D G3DSA:3.30.1130.10 79 204 2.8E-53 T 16-09-2016 BER92_RS19125 46ee505380929c58c59cb17accc1619c 209 PANTHER PTHR11109 11 203 3.3E-97 T 16-09-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 BER92_RS19125 46ee505380929c58c59cb17accc1619c 209 Gene3D G3DSA:1.10.286.10 20 71 3.5E-23 T 16-09-2016 BER92_RS19125 46ee505380929c58c59cb17accc1619c 209 Pfam PF01227 GTP cyclohydrolase I 26 203 1.2E-72 T 16-09-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 BER92_RS19125 46ee505380929c58c59cb17accc1619c 209 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 131 141 - T 16-09-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 BER92_RS00655 beee7e0097caa19d5c8847efcdafc3ac 229 SUPERFAMILY SSF47616 78 206 1.23E-35 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS00655 beee7e0097caa19d5c8847efcdafc3ac 229 Pfam PF00043 Glutathione S-transferase, C-terminal domain 129 197 7.9E-13 T 16-09-2016 IPR004046 Glutathione S-transferase, C-terminal BER92_RS00655 beee7e0097caa19d5c8847efcdafc3ac 229 Gene3D G3DSA:1.20.1050.10 83 201 1.4E-48 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS00655 beee7e0097caa19d5c8847efcdafc3ac 229 PANTHER PTHR11260:SF178 2 209 4.8E-65 T 16-09-2016 BER92_RS00655 beee7e0097caa19d5c8847efcdafc3ac 229 PANTHER PTHR11260 2 209 4.8E-65 T 16-09-2016 BER92_RS00655 beee7e0097caa19d5c8847efcdafc3ac 229 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 81 2.5E-14 T 16-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BER92_RS00655 beee7e0097caa19d5c8847efcdafc3ac 229 SUPERFAMILY SSF52833 1 83 5.83E-22 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS00655 beee7e0097caa19d5c8847efcdafc3ac 229 Gene3D G3DSA:3.40.30.10 1 82 6.1E-27 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 Gene3D G3DSA:1.10.10.10 126 221 3.8E-20 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 PANTHER PTHR26402 1 222 4.1E-72 T 16-09-2016 BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 SMART SM00862 147 221 3.0E-13 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 SMART SM00448 1 113 8.2E-37 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 Pfam PF00072 Response regulator receiver domain 4 113 1.3E-24 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 1.2E-14 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 PANTHER PTHR26402:SF552 1 222 4.1E-72 T 16-09-2016 BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 SUPERFAMILY SSF46894 124 222 9.35E-19 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 SUPERFAMILY SSF52172 1 125 5.41E-36 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS15025 204fff06e39b41896e9414a279a9d8c0 238 Gene3D G3DSA:3.40.50.2300 1 125 1.0E-34 T 16-09-2016 BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 PANTHER PTHR30419:SF10 7 324 9.3E-170 T 16-09-2016 BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 Gene3D G3DSA:1.10.10.10 12 94 6.7E-21 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 Gene3D G3DSA:3.40.190.10 103 194 7.8E-18 T 16-09-2016 BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 Pfam PF03466 LysR substrate binding domain 103 307 5.2E-30 T 16-09-2016 IPR005119 LysR, substrate-binding BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 PANTHER PTHR30419 7 324 9.3E-170 T 16-09-2016 BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 1.5E-6 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 1.5E-6 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 1.5E-6 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 SUPERFAMILY SSF53850 103 308 2.44E-29 T 16-09-2016 BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 SUPERFAMILY SSF46785 10 121 7.07E-18 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 5.7E-16 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS04790 29b78bfaa5cf60f259a7c3c056c50ee8 333 Gene3D G3DSA:3.40.190.10 195 272 8.2E-8 T 16-09-2016 BER92_RS15775 8ccbc53804421b83b0e1dafab97fcace 322 PANTHER PTHR35604 2 322 2.4E-242 T 16-09-2016 BER92_RS15775 8ccbc53804421b83b0e1dafab97fcace 322 PANTHER PTHR35604:SF2 2 322 2.4E-242 T 16-09-2016 BER92_RS15775 8ccbc53804421b83b0e1dafab97fcace 322 Pfam PF01609 Transposase DDE domain 135 310 2.9E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS15775 8ccbc53804421b83b0e1dafab97fcace 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS08465 7ea62d1172f468bce972657b889dd04e 243 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 78 225 4.4E-67 T 16-09-2016 IPR011919 Cell division protein ZipA GO:0000917|GO:0007049|GO:0016021 BER92_RS08465 7ea62d1172f468bce972657b889dd04e 243 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 98 223 1.2E-37 T 16-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 BER92_RS08465 7ea62d1172f468bce972657b889dd04e 243 PANTHER PTHR38685 1 237 5.4E-87 T 16-09-2016 BER92_RS08465 7ea62d1172f468bce972657b889dd04e 243 SUPERFAMILY SSF64383 94 232 1.03E-36 T 16-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 BER92_RS08465 7ea62d1172f468bce972657b889dd04e 243 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 98 226 2.0E-69 T 16-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 BER92_RS08465 7ea62d1172f468bce972657b889dd04e 243 SMART SM00771 95 225 1.5E-55 T 16-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 BER92_RS08465 7ea62d1172f468bce972657b889dd04e 243 Hamap MF_00509 Cell division protein ZipA [zipA]. 5 227 18.811 T 16-09-2016 IPR011919 Cell division protein ZipA GO:0000917|GO:0007049|GO:0016021 BER92_RS08465 7ea62d1172f468bce972657b889dd04e 243 PANTHER PTHR38685:SF1 1 237 5.4E-87 T 16-09-2016 BER92_RS08465 7ea62d1172f468bce972657b889dd04e 243 Gene3D G3DSA:3.30.1400.10 94 232 4.1E-44 T 16-09-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 Gene3D G3DSA:1.10.10.10 7 80 2.6E-24 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 4.8E-18 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 SUPERFAMILY SSF46785 6 84 2.24E-21 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 9 238 2.4E-91 T 16-09-2016 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 UniPathway: UPA00379 BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 SMART SM00866 94 231 1.1E-20 T 16-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 SMART SM00345 14 73 3.5E-16 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 Pfam PF07702 UTRA domain 95 230 9.1E-25 T 16-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 PANTHER PTHR11751 8 81 1.6E-21 T 16-09-2016 BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 2.3E-5 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 2.3E-5 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 Gene3D G3DSA:3.40.1410.10 93 226 9.3E-34 T 16-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain BER92_RS08535 c53d29abd96413495f329a305d151e4f 241 SUPERFAMILY SSF64288 61 235 8.48E-30 T 16-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 Gene3D G3DSA:2.40.50.230 395 494 6.3E-29 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 Gene3D G3DSA:3.55.50.10 72 177 1.0E-28 T 16-09-2016 BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 547 646 8.2E-28 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 SUPERFAMILY SSF69279 181 316 1.29E-16 T 16-09-2016 BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 SUPERFAMILY SSF69279 360 376 1.29E-16 T 16-09-2016 BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 Pfam PF05954 Phage late control gene D protein (GPD) 14 315 6.1E-77 T 16-09-2016 BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 15 499 4.5E-70 T 16-09-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 681 842 2.6E-33 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 SUPERFAMILY SSF69255 388 494 1.6E-22 T 16-09-2016 BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 PANTHER PTHR32305:SF7 15 502 2.5E-47 T 16-09-2016 BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 SUPERFAMILY SSF69279 14 173 2.1E-43 T 16-09-2016 BER92_RS15190 c6db9af2e62c7971effc7aa669ee0043 876 PANTHER PTHR32305 15 502 2.5E-47 T 16-09-2016 BER92_RS05175 f6bc30cbe3da7ec191cf63cce86ad271 99 Gene3D G3DSA:3.30.70.330 6 97 8.3E-31 T 16-09-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 BER92_RS05175 f6bc30cbe3da7ec191cf63cce86ad271 99 SUPERFAMILY SSF54189 6 97 6.12E-28 T 16-09-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05175 f6bc30cbe3da7ec191cf63cce86ad271 99 Pfam PF00276 Ribosomal protein L23 10 95 1.6E-28 T 16-09-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 BER92_RS05175 f6bc30cbe3da7ec191cf63cce86ad271 99 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 21.929 T 16-09-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 BER92_RS05175 f6bc30cbe3da7ec191cf63cce86ad271 99 PANTHER PTHR11620 8 98 7.2E-29 T 16-09-2016 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PANTHER PTHR30511 1 360 2.0E-159 T 16-09-2016 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PANTHER PTHR30511:SF0 1 360 2.0E-159 T 16-09-2016 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 SMART SM01005 232 355 5.3E-62 T 16-09-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 Gene3D G3DSA:2.40.37.10 212 356 1.7E-52 T 16-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PRINTS PR00992 Alanine racemase signature 286 303 4.5E-58 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PRINTS PR00992 Alanine racemase signature 265 280 4.5E-58 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PRINTS PR00992 Alanine racemase signature 248 263 4.5E-58 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PRINTS PR00992 Alanine racemase signature 120 132 4.5E-58 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PRINTS PR00992 Alanine racemase signature 154 165 4.5E-58 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PRINTS PR00992 Alanine racemase signature 191 218 4.5E-58 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PRINTS PR00992 Alanine racemase signature 25 41 4.5E-58 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 PRINTS PR00992 Alanine racemase signature 60 78 4.5E-58 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 Pfam PF00842 Alanine racemase, C-terminal domain 232 354 3.2E-36 T 16-09-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 TIGRFAM TIGR00492 alr: alanine racemase 2 355 8.2E-107 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 SUPERFAMILY SSF50621 226 358 9.07E-44 T 16-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 30 40 - T 16-09-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 SUPERFAMILY SSF51419 8 233 2.36E-69 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 Gene3D G3DSA:3.20.20.10 10 211 4.0E-68 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 Hamap MF_01201 Alanine racemase. 1 355 34.478 T 16-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS16075 d8d105bee58e8fb9df1a7f637080dae5 361 Pfam PF01168 Alanine racemase, N-terminal domain 8 218 5.7E-67 T 16-09-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Gene3D G3DSA:3.40.50.300 6 293 3.5E-104 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 SMART SM00838 614 701 1.1E-52 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 5.7E-66 T 16-09-2016 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PANTHER PTHR23115 3 184 0.0 T 16-09-2016 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PANTHER PTHR23115 261 289 0.0 T 16-09-2016 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Pfam PF03764 Elongation factor G, domain IV 484 612 1.8E-42 T 16-09-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 186 2.8E-32 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Gene3D G3DSA:2.40.30.10 311 410 9.4E-38 T 16-09-2016 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Pfam PF03144 Elongation factor Tu domain 2 329 396 1.8E-18 T 16-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 704 0.0 T 16-09-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Pfam PF00679 Elongation factor G C-terminus 614 699 7.1E-28 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.8E-15 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.8E-15 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.8E-15 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.8E-15 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.8E-15 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 SMART SM00889 485 612 3.3E-68 T 16-09-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Gene3D G3DSA:3.30.70.870 411 485 5.1E-40 T 16-09-2016 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PANTHER PTHR23115:SF66 3 184 0.0 T 16-09-2016 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PANTHER PTHR23115:SF66 261 289 0.0 T 16-09-2016 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 SUPERFAMILY SSF50447 310 407 1.97E-35 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 SUPERFAMILY SSF50447 255 281 1.97E-35 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 SUPERFAMILY SSF54980 409 486 5.76E-26 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 SUPERFAMILY SSF54211 484 613 5.06E-40 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PANTHER PTHR23115:SF66 308 705 0.0 T 16-09-2016 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 SUPERFAMILY SSF54980 617 703 8.15E-28 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Hamap MF_00054_B Elongation factor G [fusA]. 6 705 108.34 T 16-09-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 PANTHER PTHR23115 308 705 0.0 T 16-09-2016 BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 16-09-2016 IPR031157 Tr-type G domain, conserved site BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Pfam PF14492 Elongation Factor G, domain II 409 483 2.4E-35 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Gene3D G3DSA:3.30.230.10 489 612 8.5E-45 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 SUPERFAMILY SSF52540 6 288 2.99E-106 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05150 1f1bd15ff4805274d823613ee3613c94 705 Gene3D G3DSA:3.30.70.240 613 699 7.4E-31 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS00530 1ae5d770ff78cf920d038ef808feb74d 356 Gene3D G3DSA:3.40.50.920 228 350 2.5E-46 T 16-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 BER92_RS00530 1ae5d770ff78cf920d038ef808feb74d 356 Pfam PF02779 Transketolase, pyrimidine binding domain 33 208 4.8E-41 T 16-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain BER92_RS00530 1ae5d770ff78cf920d038ef808feb74d 356 Pfam PF02780 Transketolase, C-terminal domain 228 345 4.9E-38 T 16-09-2016 IPR033248 Transketolase, C-terminal domain BER92_RS00530 1ae5d770ff78cf920d038ef808feb74d 356 SUPERFAMILY SSF52518 33 222 1.5E-60 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS00530 1ae5d770ff78cf920d038ef808feb74d 356 SUPERFAMILY SSF52922 220 352 7.07E-40 T 16-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 BER92_RS00530 1ae5d770ff78cf920d038ef808feb74d 356 PANTHER PTHR11624:SF79 27 354 3.5E-138 T 16-09-2016 BER92_RS00530 1ae5d770ff78cf920d038ef808feb74d 356 SMART SM00861 34 209 2.5E-56 T 16-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain BER92_RS00530 1ae5d770ff78cf920d038ef808feb74d 356 Gene3D G3DSA:3.40.50.970 33 224 2.4E-70 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS00530 1ae5d770ff78cf920d038ef808feb74d 356 PANTHER PTHR11624 27 354 3.5E-138 T 16-09-2016 IPR033247 Transketolase family BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 SMART SM00487 9 426 7.6E-27 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Pfam PF04851 Type III restriction enzyme, res subunit 16 105 2.5E-9 T 16-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 PANTHER PTHR24029 1 670 0.0 T 16-09-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 4 668 0.0 T 16-09-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Pfam PF00271 Helicase conserved C-terminal domain 436 545 7.2E-19 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Gene3D G3DSA:3.40.50.300 5 89 6.9E-52 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Gene3D G3DSA:3.40.50.300 278 338 6.9E-52 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Gene3D G3DSA:3.40.50.300 388 407 6.9E-52 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Gene3D G3DSA:3.30.2060.10 161 235 1.3E-8 T 16-09-2016 BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 SMART SM00490 460 546 2.5E-20 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 SUPERFAMILY SSF46600 623 669 7.59E-12 T 16-09-2016 IPR001943 UVR domain GO:0005515 BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 SUPERFAMILY SSF52540 3 415 2.7E-133 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Gene3D G3DSA:4.10.860.10 617 669 6.0E-17 T 16-09-2016 IPR001943 UVR domain GO:0005515 BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 SUPERFAMILY SSF52540 459 583 6.02E-36 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 SUPERFAMILY SSF52540 37 82 6.02E-36 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Pfam PF12344 Ultra-violet resistance protein B 552 593 8.4E-23 T 16-09-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 670 43.129 T 16-09-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Gene3D G3DSA:3.40.50.300 419 582 7.5E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07690 fda270549973426ddeb8b82a3d599fd2 673 Pfam PF02151 UvrB/uvrC motif 637 669 5.4E-10 T 16-09-2016 IPR001943 UVR domain GO:0005515 BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 PANTHER PTHR32305 1256 1408 1.5E-115 T 16-09-2016 BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 PANTHER PTHR32305 980 1090 1.5E-115 T 16-09-2016 BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 PANTHER PTHR32305:SF6 197 897 1.5E-115 T 16-09-2016 BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 PANTHER PTHR32305:SF6 1256 1408 1.5E-115 T 16-09-2016 BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1338 1408 2.7E-19 T 16-09-2016 IPR022385 Rhs repeat-associated core GO:0097264 BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 PANTHER PTHR32305 197 897 1.5E-115 T 16-09-2016 BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 PANTHER PTHR32305:SF6 980 1090 1.5E-115 T 16-09-2016 BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 Pfam PF05593 RHS Repeat 636 672 4.1E-8 T 16-09-2016 IPR031325 RHS repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 Pfam PF05593 RHS Repeat 510 547 5.8E-10 T 16-09-2016 IPR031325 RHS repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 Pfam PF05593 RHS Repeat 742 777 2.9E-7 T 16-09-2016 IPR031325 RHS repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 Pfam PF05593 RHS Repeat 552 589 1.7E-7 T 16-09-2016 IPR031325 RHS repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 Pfam PF05593 RHS Repeat 938 974 3.8E-7 T 16-09-2016 IPR031325 RHS repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 Pfam PF05593 RHS Repeat 574 609 1.7E-8 T 16-09-2016 IPR031325 RHS repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 938 978 1.3E-4 T 16-09-2016 IPR006530 YD repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 720 760 3.0E-9 T 16-09-2016 IPR006530 YD repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 678 718 1.6E-4 T 16-09-2016 IPR006530 YD repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 762 798 4.2E-5 T 16-09-2016 IPR006530 YD repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 636 676 3.2E-8 T 16-09-2016 IPR006530 YD repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 510 549 1.8E-8 T 16-09-2016 IPR006530 YD repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 594 635 1.7E-5 T 16-09-2016 IPR006530 YD repeat BER92_RS11410 d0e49072056557c3ea85dbefef17587f 1408 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 552 593 3.8E-6 T 16-09-2016 IPR006530 YD repeat BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 SUPERFAMILY SSF63829 54 253 4.58E-13 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Gene3D G3DSA:3.30.565.10 899 1058 2.3E-45 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PANTHER PTHR24423 810 1203 1.9E-269 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 SMART SM00448 1080 1191 1.6E-28 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 SMART SM00387 945 1059 3.2E-35 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Gene3D G3DSA:2.120.10.30 251 267 1.7E-5 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Gene3D G3DSA:2.120.10.30 359 448 1.7E-5 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 945 1057 1.3E-24 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PANTHER PTHR24423:SF548 58 141 1.9E-269 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Gene3D G3DSA:1.10.287.130 827 894 6.6E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 SMART SM00388 833 898 3.2E-22 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 SUPERFAMILY SSF52172 1079 1201 7.68E-32 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Pfam PF07495 Y_Y_Y domain 717 778 4.5E-13 T 16-09-2016 IPR011123 Two component regulator three Y BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 SUPERFAMILY SSF63829 323 546 2.42E-8 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Gene3D G3DSA:2.120.10.30 64 250 7.4E-10 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Gene3D G3DSA:2.120.10.30 528 628 9.7E-6 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PANTHER PTHR24423:SF548 430 468 1.9E-269 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PANTHER PTHR24423 430 468 1.9E-269 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PANTHER PTHR24423 58 141 1.9E-269 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 SUPERFAMILY SSF63829 508 667 5.56E-12 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Gene3D G3DSA:3.40.50.2300 1080 1201 2.3E-30 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PANTHER PTHR24423 218 290 1.9E-269 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1001 1011 6.9E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PRINTS PR00344 Bacterial sensor protein C-terminal signature 983 997 6.9E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1019 1037 6.9E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1043 1056 6.9E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Pfam PF00512 His Kinase A (phospho-acceptor) domain 833 898 2.6E-17 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Pfam PF07494 Two component regulator propeller 95 116 0.0056 T 16-09-2016 IPR011110 Two component regulator propeller BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 SUPERFAMILY SSF47384 823 899 7.06E-18 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 SUPERFAMILY SSF55874 887 1059 2.62E-43 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PANTHER PTHR24423:SF548 218 290 1.9E-269 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 PANTHER PTHR24423:SF548 810 1203 1.9E-269 T 16-09-2016 BER92_RS14710 da5781b3d9e21ad181aac607c0670dfc 1204 Pfam PF00072 Response regulator receiver domain 1082 1191 1.8E-19 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS07485 060181ebb6d686afb72c45c5c60217d7 92 SUPERFAMILY SSF46785 8 79 6.19E-7 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS07485 060181ebb6d686afb72c45c5c60217d7 92 Gene3D G3DSA:1.10.10.10 9 77 1.3E-7 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS18115 d25fcb8d0cc23b5e524d0fb60c6d2996 514 PANTHER PTHR22773:SF49 1 512 1.4E-174 T 16-09-2016 BER92_RS18115 d25fcb8d0cc23b5e524d0fb60c6d2996 514 PANTHER PTHR22773 1 512 1.4E-174 T 16-09-2016 BER92_RS18115 d25fcb8d0cc23b5e524d0fb60c6d2996 514 Pfam PF00361 Proton-conducting membrane transporter 129 415 3.1E-30 T 16-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 BER92_RS18115 d25fcb8d0cc23b5e524d0fb60c6d2996 514 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 163 187 5.4E-7 T 16-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 BER92_RS18115 d25fcb8d0cc23b5e524d0fb60c6d2996 514 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 133 152 5.4E-7 T 16-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 BER92_RS18115 d25fcb8d0cc23b5e524d0fb60c6d2996 514 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 381 407 5.4E-7 T 16-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 BER92_RS18115 d25fcb8d0cc23b5e524d0fb60c6d2996 514 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 236 260 5.4E-7 T 16-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 BER92_RS03370 e7e128eeda25bc216a25f048e9f8b80a 322 Pfam PF05598 Transposase domain (DUF772) 50 122 3.6E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS03370 e7e128eeda25bc216a25f048e9f8b80a 322 PANTHER PTHR35604 2 322 4.4E-240 T 16-09-2016 BER92_RS03370 e7e128eeda25bc216a25f048e9f8b80a 322 PANTHER PTHR35604:SF2 2 322 4.4E-240 T 16-09-2016 BER92_RS03370 e7e128eeda25bc216a25f048e9f8b80a 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14705 e7e128eeda25bc216a25f048e9f8b80a 322 Pfam PF05598 Transposase domain (DUF772) 50 122 3.6E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS14705 e7e128eeda25bc216a25f048e9f8b80a 322 PANTHER PTHR35604 2 322 4.4E-240 T 16-09-2016 BER92_RS14705 e7e128eeda25bc216a25f048e9f8b80a 322 PANTHER PTHR35604:SF2 2 322 4.4E-240 T 16-09-2016 BER92_RS14705 e7e128eeda25bc216a25f048e9f8b80a 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 SMART SM00245 330 550 6.8E-49 T 16-09-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 242 320 1.1E-13 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 PANTHER PTHR32060:SF11 3 623 1.9E-289 T 16-09-2016 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 SUPERFAMILY SSF50156 245 319 3.62E-13 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 Pfam PF03572 Peptidase family S41 367 548 3.3E-51 T 16-09-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 Gene3D G3DSA:2.30.42.10 247 338 1.4E-17 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 553 702 1.1E-38 T 16-09-2016 IPR020992 Tail specific protease, C-terminal BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 PANTHER PTHR32060 3 623 1.9E-289 T 16-09-2016 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 SUPERFAMILY SSF52096 165 265 5.47E-67 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 SUPERFAMILY SSF52096 360 555 5.47E-67 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 SMART SM00228 247 325 7.0E-10 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 207 569 9.7E-90 T 16-09-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 Gene3D G3DSA:3.90.226.10 614 636 2.5E-60 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS02830 bb0290cf6ec2edd305142bbae8681664 727 Gene3D G3DSA:3.90.226.10 339 552 2.5E-60 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS17120 269340c5076d7cacefed2a88fdb29a91 299 SUPERFAMILY SSF47240 1 285 5.25E-84 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS17120 269340c5076d7cacefed2a88fdb29a91 299 PANTHER PTHR30565 2 279 1.0E-126 T 16-09-2016 BER92_RS17120 269340c5076d7cacefed2a88fdb29a91 299 Pfam PF05067 Manganese containing catalase 1 286 5.9E-83 T 16-09-2016 IPR007760 Manganese catalase BER92_RS17120 269340c5076d7cacefed2a88fdb29a91 299 PANTHER PTHR30565:SF3 2 279 1.0E-126 T 16-09-2016 BER92_RS17120 269340c5076d7cacefed2a88fdb29a91 299 Gene3D G3DSA:1.20.1260.10 1 197 1.5E-74 T 16-09-2016 IPR012347 Ferritin-related BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 Gene3D G3DSA:3.20.20.70 13 324 3.6E-70 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 29 40 - T 16-09-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 SMART SM00729 23 243 8.0E-4 T 16-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 14 343 39.146 T 16-09-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 Pfam PF04055 Radical SAM superfamily 28 190 2.3E-23 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 Pfam PF13353 4Fe-4S single cluster domain 31 119 3.7E-6 T 16-09-2016 BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 PANTHER PTHR22960 14 296 7.4E-120 T 16-09-2016 BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 Pfam PF06463 Molybdenum Cofactor Synthesis C 200 323 4.9E-34 T 16-09-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 14 343 9.3E-104 T 16-09-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 BER92_RS14115 9e0fdec5cb116baace9017e23541e01f 343 SUPERFAMILY SSF102114 13 291 6.02E-68 T 16-09-2016 BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 246 8.8E-59 T 16-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 Gene3D G3DSA:3.90.25.10 182 316 9.4E-27 T 16-09-2016 BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 SUPERFAMILY SSF51735 1 316 3.8E-90 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 PANTHER PTHR10366:SF77 2 320 3.6E-171 T 16-09-2016 BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 PANTHER PTHR10366 2 320 3.6E-171 T 16-09-2016 BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 PRINTS PR01713 Nucleotide sugar epimerase signature 279 296 1.5E-23 T 16-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 PRINTS PR01713 Nucleotide sugar epimerase signature 240 255 1.5E-23 T 16-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 PRINTS PR01713 Nucleotide sugar epimerase signature 214 229 1.5E-23 T 16-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 1.5E-23 T 16-09-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 BER92_RS18385 2d2a905e31a64cb0b2541eff424c3347 321 Gene3D G3DSA:3.40.50.720 1 181 1.4E-52 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PIRSF PIRSF037495 8 442 1.3E-110 T 16-09-2016 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 15 302 6.5E-30 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 5.0E-23 T 16-09-2016 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 248 264 5.0E-23 T 16-09-2016 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 5.0E-23 T 16-09-2016 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 5.0E-23 T 16-09-2016 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 278 300 5.0E-23 T 16-09-2016 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PANTHER PTHR22912:SF141 1 337 3.6E-87 T 16-09-2016 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 Gene3D G3DSA:3.50.50.60 118 320 1.9E-27 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 Gene3D G3DSA:3.50.50.60 14 117 3.8E-18 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 SUPERFAMILY SSF51905 8 321 2.7E-37 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PANTHER PTHR22912 1 337 3.6E-87 T 16-09-2016 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 288 306 5.0E-15 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 5.0E-15 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 148 172 5.0E-15 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS06215 28a2f82e9ba62cd1e1a2ca718fd3a52c 444 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 16 38 5.0E-15 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10245 9807e00adb5bf3ee00069a846952a073 133 PANTHER PTHR30435:SF12 2 133 2.2E-40 T 16-09-2016 BER92_RS10245 9807e00adb5bf3ee00069a846952a073 133 Pfam PF00460 Flagella basal body rod protein 11 39 1.3E-6 T 16-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BER92_RS10245 9807e00adb5bf3ee00069a846952a073 133 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 8 130 5.6E-28 T 16-09-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 BER92_RS10245 9807e00adb5bf3ee00069a846952a073 133 PANTHER PTHR30435 2 133 2.2E-40 T 16-09-2016 BER92_RS10245 9807e00adb5bf3ee00069a846952a073 133 PIRSF PIRSF002889 2 133 1.1E-32 T 16-09-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 SUPERFAMILY SSF55486 249 497 2.34E-68 T 16-09-2016 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 PANTHER PTHR11533:SF190 44 890 1.1E-216 T 16-09-2016 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 PANTHER PTHR11533 44 890 1.1E-216 T 16-09-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 SUPERFAMILY SSF63737 35 239 7.98E-50 T 16-09-2016 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 357 369 1.4E-24 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 222 237 1.4E-24 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 302 312 1.4E-24 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 338 353 1.4E-24 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 174 189 1.4E-24 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 Pfam PF01433 Peptidase family M1 43 430 4.1E-120 T 16-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 Gene3D G3DSA:1.10.390.10 351 499 8.1E-44 T 16-09-2016 BER92_RS13835 7397db6a48d352b7a82811052591a59a 891 Pfam PF11838 ERAP1-like C-terminal domain 562 868 3.7E-39 T 16-09-2016 IPR024571 ERAP1-like C-terminal domain BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 Gene3D G3DSA:3.30.70.120 232 302 2.8E-4 T 16-09-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 PANTHER PTHR21403:SF0 1 304 6.5E-97 T 16-09-2016 BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 Gene3D G3DSA:3.40.190.10 10 145 1.7E-45 T 16-09-2016 BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 162 183 - T 16-09-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 Pfam PF08029 HisG, C-terminal domain 232 301 9.2E-8 T 16-09-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 Pfam PF01634 ATP phosphoribosyltransferase 60 224 1.9E-44 T 16-09-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 PANTHER PTHR21403 1 304 6.5E-97 T 16-09-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 SUPERFAMILY SSF53850 12 227 1.53E-61 T 16-09-2016 BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 13 201 7.8E-54 T 16-09-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 206 302 5.2E-17 T 16-09-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 BER92_RS09200 717e9dc41fbf7c742e657e8af397e1df 304 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 12 304 31.417 T 16-09-2016 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 BER92_RS00050 63676121b822ed92a807a8407dd629a5 253 PANTHER PTHR30625 14 247 1.6E-64 T 16-09-2016 BER92_RS00050 63676121b822ed92a807a8407dd629a5 253 Pfam PF01618 MotA/TolQ/ExbB proton channel family 115 236 8.6E-37 T 16-09-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 BER92_RS00050 63676121b822ed92a807a8407dd629a5 253 PANTHER PTHR30625:SF3 14 247 1.6E-64 T 16-09-2016 BER92_RS03275 0410d17cd4c81f586539373772c1c2e9 457 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 20 443 9.6E-132 T 16-09-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 BER92_RS03275 0410d17cd4c81f586539373772c1c2e9 457 Gene3D G3DSA:1.20.1600.10 18 431 9.8E-84 T 16-09-2016 BER92_RS03275 0410d17cd4c81f586539373772c1c2e9 457 SUPERFAMILY SSF56954 23 443 8.11E-87 T 16-09-2016 BER92_RS03275 0410d17cd4c81f586539373772c1c2e9 457 PANTHER PTHR30026:SF3 1 454 5.0E-131 T 16-09-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 BER92_RS03275 0410d17cd4c81f586539373772c1c2e9 457 PANTHER PTHR30026 1 454 5.0E-131 T 16-09-2016 BER92_RS03275 0410d17cd4c81f586539373772c1c2e9 457 Pfam PF02321 Outer membrane efflux protein 24 210 4.9E-23 T 16-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 BER92_RS03275 0410d17cd4c81f586539373772c1c2e9 457 Pfam PF02321 Outer membrane efflux protein 235 428 4.6E-34 T 16-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 SUPERFAMILY SSF109736 159 212 1.06E-18 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 Gene3D G3DSA:3.30.1330.10 651 801 5.0E-14 T 16-09-2016 IPR016188 PurM-like, N-terminal domain BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 Gene3D G3DSA:3.30.1330.10 203 411 7.8E-36 T 16-09-2016 IPR016188 PurM-like, N-terminal domain BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 SUPERFAMILY SSF55326 213 416 1.71E-51 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 PANTHER PTHR10099:SF5 825 1331 0.0 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 4 795 0.0 T 16-09-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 SUPERFAMILY SSF52317 1076 1330 7.5E-91 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 PANTHER PTHR10099 1 796 0.0 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 PANTHER PTHR10099 825 1331 0.0 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 Gene3D G3DSA:3.40.50.880 1080 1303 7.0E-11 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 Pfam PF02769 AIR synthase related protein, C-terminal domain 421 579 5.2E-31 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 Pfam PF02769 AIR synthase related protein, C-terminal domain 861 1003 2.9E-9 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1331 20.413 T 16-09-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 PANTHER PTHR10099:SF5 1 796 0.0 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 SUPERFAMILY SSF55326 825 848 2.72E-58 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 SUPERFAMILY SSF55326 626 797 2.72E-58 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 SMART SM01211 1079 1330 7.1E-144 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1079 1330 3.5E-98 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 SUPERFAMILY SSF56042 421 661 1.42E-50 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 SUPERFAMILY SSF82697 1 148 4.87E-32 T 16-09-2016 BER92_RS04335 1c88f87dc8f6a5dddb23d10b916679dc 1331 SUPERFAMILY SSF56042 856 1072 5.68E-48 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS15550 49cc8f08d029e6f97c40a9a23f35ba4d 308 Pfam PF02470 MlaD protein 39 115 1.6E-14 T 16-09-2016 IPR003399 Mce/MlaD BER92_RS15550 49cc8f08d029e6f97c40a9a23f35ba4d 308 PANTHER PTHR36698:SF2 2 307 5.3E-124 T 16-09-2016 BER92_RS15550 49cc8f08d029e6f97c40a9a23f35ba4d 308 PANTHER PTHR36698 2 307 5.3E-124 T 16-09-2016 BER92_RS14420 44100d31f19b1c65ddb12533c8970bcd 227 PIRSF PIRSF000370 16 227 2.1E-68 T 16-09-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 BER92_RS14420 44100d31f19b1c65ddb12533c8970bcd 227 Gene3D G3DSA:3.20.20.70 44 117 6.9E-14 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS14420 44100d31f19b1c65ddb12533c8970bcd 227 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 18 227 1.2E-110 T 16-09-2016 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE BER92_RS14420 44100d31f19b1c65ddb12533c8970bcd 227 Pfam PF13394 4Fe-4S single cluster domain 39 121 3.5E-10 T 16-09-2016 BER92_RS14420 44100d31f19b1c65ddb12533c8970bcd 227 SUPERFAMILY SSF102114 41 117 1.14E-14 T 16-09-2016 BER92_RS14420 44100d31f19b1c65ddb12533c8970bcd 227 PANTHER PTHR11228 1 221 2.2E-69 T 16-09-2016 BER92_RS14420 44100d31f19b1c65ddb12533c8970bcd 227 Pfam PF04055 Radical SAM superfamily 41 127 2.0E-14 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS14420 44100d31f19b1c65ddb12533c8970bcd 227 PANTHER PTHR11228:SF6 1 221 2.2E-69 T 16-09-2016 BER92_RS14420 44100d31f19b1c65ddb12533c8970bcd 227 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 18 224 37.003 T 16-09-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 BER92_RS18355 52026c8267f2ab228a6edbd1c9501f03 219 Pfam PF00156 Phosphoribosyl transferase domain 48 157 3.5E-13 T 16-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 BER92_RS18355 52026c8267f2ab228a6edbd1c9501f03 219 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 11 189 1.4E-54 T 16-09-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS18355 52026c8267f2ab228a6edbd1c9501f03 219 PANTHER PTHR19278:SF36 1 214 1.2E-114 T 16-09-2016 BER92_RS18355 52026c8267f2ab228a6edbd1c9501f03 219 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 219 30.6 T 16-09-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS18355 52026c8267f2ab228a6edbd1c9501f03 219 SUPERFAMILY SSF53271 5 198 1.01E-41 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS18355 52026c8267f2ab228a6edbd1c9501f03 219 PANTHER PTHR19278 1 214 1.2E-114 T 16-09-2016 BER92_RS18355 52026c8267f2ab228a6edbd1c9501f03 219 Gene3D G3DSA:3.40.50.2020 7 214 2.2E-72 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 PIRSF PIRSF000443 1 400 1.6E-134 T 16-09-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 PANTHER PTHR32268 12 294 9.2E-149 T 16-09-2016 BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 PANTHER PTHR32268 324 400 9.2E-149 T 16-09-2016 BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 Hamap MF_00296 Homoserine O-acetyltransferase [metX]. 2 399 43.283 T 16-09-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 SUPERFAMILY SSF53474 325 398 1.07E-82 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 SUPERFAMILY SSF53474 14 294 1.07E-82 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 PANTHER PTHR32268:SF11 12 294 9.2E-149 T 16-09-2016 BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 PANTHER PTHR32268:SF11 324 400 9.2E-149 T 16-09-2016 BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 16 294 9.0E-93 T 16-09-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 Gene3D G3DSA:3.40.50.1820 337 398 1.2E-26 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 Gene3D G3DSA:3.40.50.1820 247 297 1.2E-26 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 Gene3D G3DSA:3.40.50.1820 24 215 1.2E-26 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS08835 171fef6be2a4628bd04d7b670846412b 400 Pfam PF00561 alpha/beta hydrolase fold 45 385 4.1E-24 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 Hamap MF_01971 Kynurenine 3-monooxygenase [kmo]. 6 447 27.777 T 16-09-2016 IPR027545 Kynurenine 3-monooxygenase GO:0004502|GO:0006569|GO:0019805 KEGG: 00380+1.14.13.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|UniPathway: UPA00253 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 Gene3D G3DSA:3.50.50.60 12 184 2.1E-34 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 Gene3D G3DSA:3.50.50.60 284 363 2.1E-34 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 PANTHER PTHR13789 12 435 5.5E-137 T 16-09-2016 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 SUPERFAMILY SSF51905 283 392 5.44E-52 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 SUPERFAMILY SSF51905 12 179 5.44E-52 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 312 328 9.6E-18 T 16-09-2016 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 9.6E-18 T 16-09-2016 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 9.6E-18 T 16-09-2016 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 312 9.6E-18 T 16-09-2016 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 PANTHER PTHR13789:SF205 12 435 5.5E-137 T 16-09-2016 BER92_RS08390 63ecea63c7cca0b8de303079b44273c4 455 Pfam PF01494 FAD binding domain 11 336 5.8E-23 T 16-09-2016 IPR002938 FAD-binding domain GO:0071949 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 SMART SM01340 209 327 9.2E-57 T 16-09-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 SUPERFAMILY SSF55874 2 201 7.73E-53 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 119 3.2E-9 T 16-09-2016 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 PANTHER PTHR10073 3 615 8.1E-162 T 16-09-2016 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 615 28.89 T 16-09-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 Gene3D G3DSA:3.30.565.10 2 202 1.1E-72 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 SMART SM00853 432 575 2.2E-53 T 16-09-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 211 326 1.3E-38 T 16-09-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 SUPERFAMILY SSF118116 428 617 4.71E-59 T 16-09-2016 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 Pfam PF08676 MutL C terminal dimerisation domain 428 575 4.8E-48 T 16-09-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 16-09-2016 IPR014762 DNA mismatch repair, conserved site BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 Gene3D G3DSA:3.30.230.10 214 326 2.0E-38 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 307 1.9E-95 T 16-09-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 BER92_RS12110 0e87113a6866b8dd29741d5a2311c54e 619 SUPERFAMILY SSF54211 205 327 2.05E-35 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 PRINTS PR00996 Glutamate methyltransferase family signature 113 133 2.5E-38 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 PRINTS PR00996 Glutamate methyltransferase family signature 78 90 2.5E-38 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 PRINTS PR00996 Glutamate methyltransferase family signature 219 233 2.5E-38 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 PRINTS PR00996 Glutamate methyltransferase family signature 39 52 2.5E-38 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 PRINTS PR00996 Glutamate methyltransferase family signature 147 163 2.5E-38 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 PRINTS PR00996 Glutamate methyltransferase family signature 238 261 2.5E-38 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 PANTHER PTHR24422:SF13 10 269 1.1E-106 T 16-09-2016 BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 Gene3D G3DSA:1.10.155.10 9 83 5.7E-32 T 16-09-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 SMART SM00138 17 279 5.2E-86 T 16-09-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 PANTHER PTHR24422 10 269 1.1E-106 T 16-09-2016 BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 Pfam PF03705 CheR methyltransferase, all-alpha domain 19 68 1.4E-18 T 16-09-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 PIRSF PIRSF000410 1 280 6.1E-89 T 16-09-2016 IPR026024 Chemotaxis protein methyltransferase CheR BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 Gene3D G3DSA:3.40.50.150 84 276 2.0E-61 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 SUPERFAMILY SSF53335 85 276 1.5E-48 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 Pfam PF01739 CheR methyltransferase, SAM binding domain 85 269 1.2E-49 T 16-09-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BER92_RS09475 3277916d6b815c3cdde1f505372bcb1d 286 SUPERFAMILY SSF47757 9 84 9.29E-24 T 16-09-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BER92_RS14535 016e3336ad35352beb63dbb624cd2ee4 795 Gene3D G3DSA:2.40.170.20 173 795 5.0E-90 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS14535 016e3336ad35352beb63dbb624cd2ee4 795 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 43 - T 16-09-2016 IPR010916 TonB box, conserved site BER92_RS14535 016e3336ad35352beb63dbb624cd2ee4 795 Gene3D G3DSA:2.170.130.10 50 172 1.8E-32 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS14535 016e3336ad35352beb63dbb624cd2ee4 795 SUPERFAMILY SSF56935 36 795 1.74E-105 T 16-09-2016 BER92_RS14535 016e3336ad35352beb63dbb624cd2ee4 795 PANTHER PTHR30069:SF4 14 716 3.8E-109 T 16-09-2016 BER92_RS14535 016e3336ad35352beb63dbb624cd2ee4 795 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 171 4.2E-22 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS14535 016e3336ad35352beb63dbb624cd2ee4 795 Pfam PF00593 TonB dependent receptor 478 793 2.0E-29 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS14535 016e3336ad35352beb63dbb624cd2ee4 795 PANTHER PTHR30069 14 716 3.8E-109 T 16-09-2016 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 514 527 - T 16-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 SUPERFAMILY SSF52540 292 534 2.88E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 Gene3D G3DSA:3.40.50.300 352 540 6.2E-76 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 Pfam PF00448 SRP54-type protein, GTPase domain 340 540 4.0E-72 T 16-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 SMART SM00382 339 519 8.5E-5 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 Pfam PF02881 SRP54-type protein, helical bundle domain 257 319 7.1E-11 T 16-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 268 540 1.5E-99 T 16-09-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 PANTHER PTHR11564 240 542 6.1E-129 T 16-09-2016 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 SMART SM00963 246 325 5.5E-18 T 16-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 268 541 62.554 T 16-09-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 SMART SM00962 340 541 7.2E-109 T 16-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 Gene3D G3DSA:1.20.120.140 270 351 3.0E-27 T 16-09-2016 BER92_RS06190 13c2463c5c716ec27c615d8c68c58575 546 PANTHER PTHR11564:SF16 240 542 6.1E-129 T 16-09-2016 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 Gene3D G3DSA:1.10.560.10 368 518 6.5E-41 T 16-09-2016 IPR027413 GroEL-like equatorial domain BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 SUPERFAMILY SSF52029 184 376 4.71E-82 T 16-09-2016 IPR027409 GroEL-like apical domain BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 16-09-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 PANTHER PTHR11353 2 546 1.7E-257 T 16-09-2016 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 Gene3D G3DSA:1.10.560.10 3 188 1.3E-48 T 16-09-2016 IPR027413 GroEL-like equatorial domain BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 SUPERFAMILY SSF54849 137 203 2.52E-24 T 16-09-2016 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 Gene3D G3DSA:3.50.7.10 189 367 2.3E-98 T 16-09-2016 IPR027409 GroEL-like apical domain BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 PRINTS PR00298 60kDa chaperonin signature 398 419 1.6E-74 T 16-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 PRINTS PR00298 60kDa chaperonin signature 83 110 1.6E-74 T 16-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 PRINTS PR00298 60kDa chaperonin signature 268 291 1.6E-74 T 16-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 PRINTS PR00298 60kDa chaperonin signature 27 53 1.6E-74 T 16-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 PRINTS PR00298 60kDa chaperonin signature 350 375 1.6E-74 T 16-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 SUPERFAMILY SSF48592 406 521 8.4E-79 T 16-09-2016 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 SUPERFAMILY SSF48592 7 134 8.4E-79 T 16-09-2016 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 8.5E-97 T 16-09-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 3.6E-254 T 16-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 BER92_RS17505 b21908d8e389db83d4d01a315a3a88e3 546 Hamap MF_00600 60 kDa chaperonin [groL]. 2 544 41.62 T 16-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 Gene3D G3DSA:3.90.190.20 322 469 9.0E-52 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 Gene3D G3DSA:3.40.1190.10 104 321 6.3E-82 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 SUPERFAMILY SSF53244 319 468 1.23E-43 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 SUPERFAMILY SSF53623 101 317 1.31E-69 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 15 473 43.174 T 16-09-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 SUPERFAMILY SSF51984 17 102 6.41E-28 T 16-09-2016 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 PANTHER PTHR23135:SF5 10 462 1.8E-212 T 16-09-2016 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 18 467 5.8E-162 T 16-09-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 Pfam PF02875 Mur ligase family, glutamate ligase domain 333 410 1.3E-18 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 PANTHER PTHR23135 10 462 1.8E-212 T 16-09-2016 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 Gene3D G3DSA:3.40.50.720 17 102 6.9E-35 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 Pfam PF08245 Mur ligase middle domain 120 299 7.9E-28 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03780 2ae32f9946ac4fbd1759967f350350a1 477 Pfam PF01225 Mur ligase family, catalytic domain 18 115 6.2E-27 T 16-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 376 555 2.9E-66 T 16-09-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR00701 60kDa inner membrane protein signature 237 255 1.9E-50 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR00701 60kDa inner membrane protein signature 181 201 1.9E-50 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR00701 60kDa inner membrane protein signature 438 461 1.9E-50 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR00701 60kDa inner membrane protein signature 271 286 1.9E-50 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR00701 60kDa inner membrane protein signature 2 23 1.9E-50 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR00701 60kDa inner membrane protein signature 522 545 1.9E-50 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR00701 60kDa inner membrane protein signature 485 507 1.9E-50 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 Pfam PF14849 YidC periplasmic domain 88 366 3.0E-65 T 16-09-2016 IPR028053 Membrane insertase YidC, N-terminal BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR01900 YidC translocation/secretion protein signature 491 506 6.8E-18 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR01900 YidC translocation/secretion protein signature 511 535 6.8E-18 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PRINTS PR01900 YidC translocation/secretion protein signature 362 378 6.8E-18 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 558 22.125 T 16-09-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PANTHER PTHR12428 188 554 3.8E-118 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 Pfam PF02096 60Kd inner membrane protein 377 555 1.4E-56 T 16-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 PANTHER PTHR12428:SF14 188 554 3.8E-118 T 16-09-2016 BER92_RS19315 4898fccc8fcf426f3453420e15b4624d 571 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 374 7.9E-67 T 16-09-2016 IPR028053 Membrane insertase YidC, N-terminal BER92_RS02720 212db9e1dd30302564102f8726003e67 296 PANTHER PTHR10799:SF750 163 288 4.8E-14 T 16-09-2016 BER92_RS02720 212db9e1dd30302564102f8726003e67 296 Gene3D G3DSA:3.30.70.270 132 283 2.4E-36 T 16-09-2016 BER92_RS02720 212db9e1dd30302564102f8726003e67 296 SUPERFAMILY SSF55073 135 283 5.73E-34 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS02720 212db9e1dd30302564102f8726003e67 296 PANTHER PTHR10799 1 131 4.8E-14 T 16-09-2016 BER92_RS02720 212db9e1dd30302564102f8726003e67 296 SMART SM00267 119 285 7.1E-29 T 16-09-2016 IPR000160 GGDEF domain BER92_RS02720 212db9e1dd30302564102f8726003e67 296 PANTHER PTHR10799:SF750 1 131 4.8E-14 T 16-09-2016 BER92_RS02720 212db9e1dd30302564102f8726003e67 296 Pfam PF00990 Diguanylate cyclase, GGDEF domain 130 279 2.3E-29 T 16-09-2016 IPR000160 GGDEF domain BER92_RS02720 212db9e1dd30302564102f8726003e67 296 PANTHER PTHR10799 163 288 4.8E-14 T 16-09-2016 BER92_RS02720 212db9e1dd30302564102f8726003e67 296 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 126 281 3.6E-29 T 16-09-2016 IPR000160 GGDEF domain BER92_RS05830 60273d506a2760ecafdf88c7cd74cd07 405 PIRSF PIRSF001434 3 392 5.1E-132 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS05830 60273d506a2760ecafdf88c7cd74cd07 405 Gene3D G3DSA:3.90.1150.10 256 391 2.0E-48 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS05830 60273d506a2760ecafdf88c7cd74cd07 405 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 14 388 6.2E-133 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS05830 60273d506a2760ecafdf88c7cd74cd07 405 PANTHER PTHR11808 14 393 8.0E-174 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS05830 60273d506a2760ecafdf88c7cd74cd07 405 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 198 212 - T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS05830 60273d506a2760ecafdf88c7cd74cd07 405 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 13 389 9.4E-178 T 16-09-2016 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|UniPathway: UPA00051 BER92_RS05830 60273d506a2760ecafdf88c7cd74cd07 405 PANTHER PTHR11808:SF15 14 393 8.0E-174 T 16-09-2016 BER92_RS05830 60273d506a2760ecafdf88c7cd74cd07 405 Gene3D G3DSA:3.40.640.10 14 254 1.0E-84 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS05830 60273d506a2760ecafdf88c7cd74cd07 405 SUPERFAMILY SSF53383 19 389 5.5E-115 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS03250 052ded83ea706d43f004b93d861cc356 65 Pfam PF10276 Zinc-finger domain 25 61 1.2E-7 T 16-09-2016 IPR019401 Zinc finger, CHCC-type BER92_RS03250 052ded83ea706d43f004b93d861cc356 65 Gene3D G3DSA:2.60.260.40 12 63 3.7E-18 T 16-09-2016 IPR019401 Zinc finger, CHCC-type BER92_RS07520 adf9a66e6f4b82e5a2eb2dd30df902e7 461 Pfam PF00120 Glutamine synthetase, catalytic domain 124 455 3.8E-106 T 16-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS07520 adf9a66e6f4b82e5a2eb2dd30df902e7 461 Gene3D G3DSA:3.10.20.70 19 126 3.3E-21 T 16-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS07520 adf9a66e6f4b82e5a2eb2dd30df902e7 461 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 16-09-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS07520 adf9a66e6f4b82e5a2eb2dd30df902e7 461 SUPERFAMILY SSF55931 123 458 6.96E-107 T 16-09-2016 BER92_RS07520 adf9a66e6f4b82e5a2eb2dd30df902e7 461 PANTHER PTHR20852:SF63 19 461 1.1E-200 T 16-09-2016 BER92_RS07520 adf9a66e6f4b82e5a2eb2dd30df902e7 461 SMART SM01230 123 380 1.1E-103 T 16-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS07520 adf9a66e6f4b82e5a2eb2dd30df902e7 461 PANTHER PTHR20852 19 461 1.1E-200 T 16-09-2016 BER92_RS07520 adf9a66e6f4b82e5a2eb2dd30df902e7 461 SUPERFAMILY SSF54368 19 122 2.35E-23 T 16-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS07520 adf9a66e6f4b82e5a2eb2dd30df902e7 461 Gene3D G3DSA:3.30.590.10 127 446 3.9E-96 T 16-09-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 BER92_RS01085 204db40b4912fa8f9fecb276a1ee4a17 460 PANTHER PTHR11328 13 459 1.3E-148 T 16-09-2016 BER92_RS01085 204db40b4912fa8f9fecb276a1ee4a17 460 Pfam PF13347 MFS/sugar transport protein 21 439 2.6E-94 T 16-09-2016 BER92_RS01085 204db40b4912fa8f9fecb276a1ee4a17 460 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 19 452 1.2E-116 T 16-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 BER92_RS01085 204db40b4912fa8f9fecb276a1ee4a17 460 Gene3D G3DSA:1.20.1250.20 28 221 1.7E-13 T 16-09-2016 BER92_RS01085 204db40b4912fa8f9fecb276a1ee4a17 460 Gene3D G3DSA:1.20.1250.20 237 435 7.4E-10 T 16-09-2016 BER92_RS01085 204db40b4912fa8f9fecb276a1ee4a17 460 PANTHER PTHR11328:SF24 13 459 1.3E-148 T 16-09-2016 BER92_RS01085 204db40b4912fa8f9fecb276a1ee4a17 460 SUPERFAMILY SSF103473 15 433 5.23E-32 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 SUPERFAMILY SSF101967 333 490 6.54E-34 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 SUPERFAMILY SSF101967 504 609 2.35E-11 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 SUPERFAMILY SSF101967 673 848 2.48E-25 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 SUPERFAMILY SSF101967 584 666 3.4E-9 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF03895 YadA-like C-terminal region 1122 1198 2.5E-11 T 16-09-2016 IPR005594 YadA-like, C-terminal BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 SUPERFAMILY SSF101967 177 273 6.67E-13 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1064 1084 7.5E-7 T 16-09-2016 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 135 155 4.8E-7 T 16-09-2016 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 466 486 1.1E-8 T 16-09-2016 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 PANTHER PTHR35843 1015 1193 0.0 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 SUPERFAMILY SSF101967 950 1086 2.22E-26 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 SUPERFAMILY SSF54523 1076 1198 3.45E-13 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Gene3D G3DSA:2.150.10.10 653 848 2.0E-30 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Gene3D G3DSA:2.150.10.10 50 158 1.6E-16 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Gene3D G3DSA:2.150.10.10 177 312 5.7E-22 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Gene3D G3DSA:2.150.10.10 899 1081 1.4E-28 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Gene3D G3DSA:2.150.10.10 313 491 2.6E-43 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Gene3D G3DSA:2.150.10.10 504 649 7.4E-18 T 16-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 SUPERFAMILY SSF101967 50 158 2.22E-16 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 PANTHER PTHR35843:SF2 1015 1193 0.0 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Gene3D G3DSA:3.30.1300.30 1082 1198 4.1E-11 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 PANTHER PTHR35843:SF2 48 998 0.0 T 16-09-2016 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF05658 Head domain of trimeric autotransporter adhesin 776 801 4.6E-4 T 16-09-2016 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF05658 Head domain of trimeric autotransporter adhesin 409 435 7.9E-5 T 16-09-2016 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF05658 Head domain of trimeric autotransporter adhesin 675 701 1.7E-4 T 16-09-2016 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF05658 Head domain of trimeric autotransporter adhesin 347 373 1.5E-4 T 16-09-2016 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF05658 Head domain of trimeric autotransporter adhesin 235 261 2.5E-4 T 16-09-2016 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 Pfam PF05658 Head domain of trimeric autotransporter adhesin 977 1003 2.9E-4 T 16-09-2016 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BER92_RS04345 b120593aad488217bab51b508f04b9f9 1198 PANTHER PTHR35843 48 998 0.0 T 16-09-2016 BER92_RS09840 cd3d2dc7e9243b1cd85fcdbaeeaa6b74 611 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 4 610 5.8E-219 T 16-09-2016 IPR010272 Type VI secretion system, TssF-like BER92_RS09840 cd3d2dc7e9243b1cd85fcdbaeeaa6b74 611 PANTHER PTHR35370:SF1 2 611 1.4E-133 T 16-09-2016 BER92_RS09840 cd3d2dc7e9243b1cd85fcdbaeeaa6b74 611 PIRSF PIRSF028304 1 610 3.1E-185 T 16-09-2016 IPR010272 Type VI secretion system, TssF-like BER92_RS09840 cd3d2dc7e9243b1cd85fcdbaeeaa6b74 611 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 5 608 1.1E-204 T 16-09-2016 IPR010272 Type VI secretion system, TssF-like BER92_RS09840 cd3d2dc7e9243b1cd85fcdbaeeaa6b74 611 PANTHER PTHR35370 2 611 1.4E-133 T 16-09-2016 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 Gene3D G3DSA:3.40.630.10 168 488 5.2E-132 T 16-09-2016 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 PANTHER PTHR11963:SF13 1 489 2.5E-215 T 16-09-2016 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 SUPERFAMILY SSF53187 175 488 3.14E-118 T 16-09-2016 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 PRINTS PR00481 Cytosol aminopeptidase signature 366 381 4.0E-50 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 PRINTS PR00481 Cytosol aminopeptidase signature 316 337 4.0E-50 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 PRINTS PR00481 Cytosol aminopeptidase signature 257 274 4.0E-50 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 PRINTS PR00481 Cytosol aminopeptidase signature 279 300 4.0E-50 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 PRINTS PR00481 Cytosol aminopeptidase signature 338 358 4.0E-50 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 5 490 35.517 T 16-09-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 SUPERFAMILY SSF52949 4 179 3.77E-39 T 16-09-2016 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 PANTHER PTHR11963 1 489 2.5E-215 T 16-09-2016 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 Gene3D G3DSA:3.40.220.10 4 160 2.3E-48 T 16-09-2016 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 342 349 - T 16-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 21 144 7.7E-29 T 16-09-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BER92_RS04300 8becfe98740b00351e0cb012b0af77fe 493 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 181 481 2.5E-114 T 16-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 SUPERFAMILY SSF55979 1 116 2.07E-26 T 16-09-2016 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 SUPERFAMILY SSF55979 246 366 9.42E-35 T 16-09-2016 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 PIRSF PIRSF000804 1 366 3.2E-121 T 16-09-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 Gene3D G3DSA:3.10.150.10 249 366 9.9E-37 T 16-09-2016 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 SUPERFAMILY SSF55979 127 244 4.97E-29 T 16-09-2016 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 PANTHER PTHR30478 2 366 1.1E-141 T 16-09-2016 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 SMART SM00480 17 362 2.3E-135 T 16-09-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 246 365 3.0E-34 T 16-09-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 Gene3D G3DSA:3.10.150.10 1 121 4.1E-31 T 16-09-2016 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 118 9.6E-37 T 16-09-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 4.8E-36 T 16-09-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 3.9E-107 T 16-09-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS00010 3963d399a3678995567cc4eea13fda72 366 Gene3D G3DSA:3.10.150.10 122 248 1.3E-37 T 16-09-2016 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 PANTHER PTHR11699:SF18 554 1051 6.9E-177 T 16-09-2016 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 PIRSF PIRSF000197 13 1063 0.0 T 16-09-2016 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 Gene3D G3DSA:3.40.309.10 836 1027 2.7E-41 T 16-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 SUPERFAMILY SSF81935 27 198 1.44E-61 T 16-09-2016 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 Gene3D G3DSA:1.20.5.550 27 76 1.6E-15 T 16-09-2016 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 83 196 4.1E-44 T 16-09-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 Pfam PF01619 Proline dehydrogenase 210 501 3.7E-90 T 16-09-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 SUPERFAMILY SSF51730 199 542 1.84E-112 T 16-09-2016 IPR029041 FAD-linked oxidoreductase-like BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 543 1044 3.6E-212 T 16-09-2016 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 SUPERFAMILY SSF53720 587 1051 8.64E-124 T 16-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 Gene3D G3DSA:3.40.605.10 590 835 1.8E-69 T 16-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 Gene3D G3DSA:3.20.20.220 199 542 6.5E-104 T 16-09-2016 IPR029041 FAD-linked oxidoreductase-like BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 Pfam PF00171 Aldehyde dehydrogenase family 590 1048 1.1E-114 T 16-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 848 859 - T 16-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 PANTHER PTHR11699 554 1051 6.9E-177 T 16-09-2016 BER92_RS18315 de047ce0e43734dc41fdf5aacb9612ba 1066 Gene3D G3DSA:1.10.2060.10 77 197 5.1E-49 T 16-09-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 BER92_RS00610 a3472c1ecadcaa271f701cc2d137015a 340 SUPERFAMILY SSF52540 7 239 2.09E-62 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00610 a3472c1ecadcaa271f701cc2d137015a 340 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS00610 a3472c1ecadcaa271f701cc2d137015a 340 Pfam PF00005 ABC transporter 28 172 1.1E-27 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS00610 a3472c1ecadcaa271f701cc2d137015a 340 PANTHER PTHR24220:SF305 13 309 5.1E-157 T 16-09-2016 BER92_RS00610 a3472c1ecadcaa271f701cc2d137015a 340 Gene3D G3DSA:3.40.50.300 7 233 3.4E-65 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00610 a3472c1ecadcaa271f701cc2d137015a 340 SMART SM00382 37 219 4.4E-11 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS00610 a3472c1ecadcaa271f701cc2d137015a 340 PANTHER PTHR24220 13 309 5.1E-157 T 16-09-2016 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 SMART SM00359 290 376 3.1E-14 T 16-09-2016 IPR002478 PUA domain GO:0003723 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 SUPERFAMILY SSF88697 290 383 2.82E-21 T 16-09-2016 IPR015947 PUA-like domain BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 SUPERFAMILY SSF53633 20 269 3.93E-58 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 Pfam PF01472 PUA domain 290 367 1.3E-20 T 16-09-2016 IPR002478 PUA domain GO:0003723 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 ProSitePatterns PS00902 Glutamate 5-kinase signature. 220 237 - T 16-09-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 Hamap MF_00456 Glutamate 5-kinase [proB]. 20 271 34.245 T 16-09-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 Gene3D G3DSA:3.40.1160.10 15 272 4.4E-53 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 Pfam PF00696 Amino acid kinase family 21 248 5.3E-37 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 TIGRFAM TIGR01027 proB: glutamate 5-kinase 21 382 1.5E-120 T 16-09-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 PRINTS PR00474 Glutamate 5-kinase family signature 222 242 5.4E-39 T 16-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 PRINTS PR00474 Glutamate 5-kinase family signature 57 71 5.4E-39 T 16-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 PRINTS PR00474 Glutamate 5-kinase family signature 129 150 5.4E-39 T 16-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 PRINTS PR00474 Glutamate 5-kinase family signature 161 188 5.4E-39 T 16-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 Gene3D G3DSA:2.30.130.10 289 382 2.0E-23 T 16-09-2016 IPR015947 PUA-like domain BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 PIRSF PIRSF000729 17 384 3.2E-131 T 16-09-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 BER92_RS11845 a7b7c5fed903af02bd0aed216e4b3556 384 PANTHER PTHR11063 19 384 6.2E-109 T 16-09-2016 BER92_RS13420 cd4c5d58d31393395efff3c1e79a7c5b 155 SUPERFAMILY SSF53098 11 146 3.49E-31 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS13420 cd4c5d58d31393395efff3c1e79a7c5b 155 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 11 149 21.605 T 16-09-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BER92_RS13420 cd4c5d58d31393395efff3c1e79a7c5b 155 Pfam PF03652 Holliday junction resolvase 12 146 7.6E-36 T 16-09-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BER92_RS13420 cd4c5d58d31393395efff3c1e79a7c5b 155 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 14 145 3.7E-29 T 16-09-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BER92_RS13420 cd4c5d58d31393395efff3c1e79a7c5b 155 SMART SM00732 11 111 3.9E-27 T 16-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 BER92_RS13420 cd4c5d58d31393395efff3c1e79a7c5b 155 Gene3D G3DSA:3.30.420.140 11 149 3.5E-39 T 16-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 BER92_RS13420 cd4c5d58d31393395efff3c1e79a7c5b 155 PANTHER PTHR33317 6 145 3.2E-31 T 16-09-2016 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 Gene3D G3DSA:3.20.19.10 605 857 1.8E-65 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS13930 d46e736755add52af1de02e7360396f4 882 SUPERFAMILY SSF52016 599 857 4.51E-66 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS13930 d46e736755add52af1de02e7360396f4 882 Gene3D G3DSA:3.30.499.10 22 226 3.3E-60 T 16-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PRINTS PR00415 Aconitase family signature 281 294 9.3E-28 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PRINTS PR00415 Aconitase family signature 267 280 9.3E-28 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PRINTS PR00415 Aconitase family signature 138 151 9.3E-28 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PRINTS PR00415 Aconitase family signature 191 204 9.3E-28 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PRINTS PR00415 Aconitase family signature 205 220 9.3E-28 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PRINTS PR00415 Aconitase family signature 360 374 9.3E-28 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PRINTS PR00415 Aconitase family signature 162 170 9.3E-28 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PRINTS PR00415 Aconitase family signature 464 477 9.3E-28 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PRINTS PR00415 Aconitase family signature 402 413 9.3E-28 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 Pfam PF00694 Aconitase C-terminal domain 657 787 3.0E-29 T 16-09-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 Pfam PF00330 Aconitase family (aconitate hydratase) 70 533 1.5E-144 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 Gene3D G3DSA:3.30.499.10 361 545 8.8E-55 T 16-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PANTHER PTHR11670 720 861 0.0 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PANTHER PTHR11670 1 677 0.0 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PANTHER PTHR11670:SF43 720 861 0.0 T 16-09-2016 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 Gene3D G3DSA:3.40.1060.10 227 360 1.7E-31 T 16-09-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 SUPERFAMILY SSF53732 23 588 8.24E-179 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 PANTHER PTHR11670:SF43 1 677 0.0 T 16-09-2016 BER92_RS13930 d46e736755add52af1de02e7360396f4 882 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 859 0.0 T 16-09-2016 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|UniPathway: UPA00946 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 PANTHER PTHR11670:SF39 305 861 0.0 T 16-09-2016 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 Gene3D G3DSA:3.30.499.10 405 522 7.0E-64 T 16-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 Gene3D G3DSA:3.20.19.10 162 361 3.8E-85 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 SUPERFAMILY SSF53732 380 856 1.31E-145 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 Pfam PF11791 Aconitate B N-terminal domain 4 156 3.0E-64 T 16-09-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 PANTHER PTHR11670 305 861 0.0 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 Pfam PF00330 Aconitase family (aconitate hydratase) 475 817 1.6E-39 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 856 0.0 T 16-09-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 8.4E-92 T 16-09-2016 IPR015929 Aconitase B, N-terminal GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 SUPERFAMILY SSF74778 1 160 2.22E-66 T 16-09-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 PIRSF PIRSF036687 1 861 0.0 T 16-09-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 ProSitePatterns PS00450 Aconitase family signature 1. 705 722 - T 16-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 Gene3D G3DSA:3.30.499.10 686 861 2.7E-52 T 16-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 SUPERFAMILY SSF52016 162 372 9.68E-64 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS09450 d363ed8dc3123f33a570eab9ab1d9954 863 Gene3D G3DSA:3.40.1060.10 523 685 4.9E-85 T 16-09-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS12275 697ec213bcb9348ff00a44e8baf35692 457 Pfam PF06057 Bacterial virulence protein (VirJ) 266 452 1.0E-78 T 16-09-2016 IPR010333 Bacterial virulence BER92_RS12275 697ec213bcb9348ff00a44e8baf35692 457 PIRSF PIRSF029063 1 457 4.8E-165 T 16-09-2016 IPR011225 Type IV secretory pathway, VirJ component BER92_RS12275 697ec213bcb9348ff00a44e8baf35692 457 Gene3D G3DSA:3.40.50.1820 268 450 2.3E-8 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS12275 697ec213bcb9348ff00a44e8baf35692 457 SUPERFAMILY SSF53474 260 451 2.09E-18 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS12275 697ec213bcb9348ff00a44e8baf35692 457 SUPERFAMILY SSF53474 40 210 4.53E-5 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 Gene3D G3DSA:3.40.50.300 330 600 1.4E-92 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 80 174 4.5E-15 T 16-09-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 SMART SM00382 352 473 4.6E-6 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 SUPERFAMILY SSF52540 213 599 2.93E-94 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 SUPERFAMILY SSF160246 81 169 5.49E-13 T 16-09-2016 BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 PANTHER PTHR30258:SF13 67 604 0.0 T 16-09-2016 BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 Gene3D G3DSA:3.30.450.90 207 324 1.4E-45 T 16-09-2016 BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 419 433 - T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 PANTHER PTHR30258 67 604 0.0 T 16-09-2016 BER92_RS18935 2c36604667737bc1f866347e69cf3044 604 Pfam PF00437 Type II/IV secretion system protein 231 491 1.5E-72 T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS15970 3c583eac9a90764ede56a1524435f726 266 Pfam PF03180 NLPA lipoprotein 31 266 3.7E-96 T 16-09-2016 IPR004872 Lipoprotein NlpA family BER92_RS15970 3c583eac9a90764ede56a1524435f726 266 Gene3D G3DSA:3.40.190.10 29 157 4.0E-49 T 16-09-2016 BER92_RS15970 3c583eac9a90764ede56a1524435f726 266 SUPERFAMILY SSF53850 30 266 6.44E-82 T 16-09-2016 BER92_RS15970 3c583eac9a90764ede56a1524435f726 266 PANTHER PTHR30429:SF0 1 266 6.5E-144 T 16-09-2016 BER92_RS15970 3c583eac9a90764ede56a1524435f726 266 PANTHER PTHR30429 1 266 6.5E-144 T 16-09-2016 IPR004872 Lipoprotein NlpA family BER92_RS15970 3c583eac9a90764ede56a1524435f726 266 PIRSF PIRSF002854 1 266 5.3E-102 T 16-09-2016 IPR004872 Lipoprotein NlpA family BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 SUPERFAMILY SSF47226 605 712 3.79E-16 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 Pfam PF00512 His Kinase A (phospho-acceptor) domain 188 253 2.1E-18 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 Gene3D G3DSA:1.20.120.160 606 712 2.5E-12 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 SMART SM00387 300 417 1.9E-34 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 Pfam PF01627 Hpt domain 628 703 2.2E-6 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 Gene3D G3DSA:3.40.50.2300 461 584 2.3E-33 T 16-09-2016 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 SMART SM00448 465 580 5.6E-33 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 SUPERFAMILY SSF52172 463 583 1.57E-32 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 300 415 1.0E-23 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 SMART SM00073 617 715 2.3E-16 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 Gene3D G3DSA:1.10.287.130 180 248 1.6E-17 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 SUPERFAMILY SSF55874 243 420 1.15E-38 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 Pfam PF00072 Response regulator receiver domain 468 580 3.6E-23 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 Gene3D G3DSA:3.30.565.10 254 418 1.3E-38 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 PANTHER PTHR24423 10 35 3.1E-122 T 16-09-2016 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 PANTHER PTHR24423 437 624 3.1E-122 T 16-09-2016 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 PANTHER PTHR24423 167 420 3.1E-122 T 16-09-2016 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 356 6.7E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 370 6.7E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 395 6.7E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 414 6.7E-13 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 SUPERFAMILY SSF47384 171 254 3.53E-21 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS09415 8b85395a9792be05a46cfdd555d091d5 729 SMART SM00388 188 253 4.9E-24 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PANTHER PTHR30555:SF0 1 198 0.0 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 SUPERFAMILY SSF48113 442 747 1.06E-115 T 16-09-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Gene3D G3DSA:1.10.420.10 601 722 4.7E-48 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 271 281 - T 16-09-2016 IPR019793 Peroxidases heam-ligand binding site BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 ProSitePatterns PS00436 Peroxidases active site signature. 84 95 - T 16-09-2016 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Gene3D G3DSA:1.10.520.10 251 264 1.2E-71 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Gene3D G3DSA:1.10.520.10 444 600 3.2E-65 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Gene3D G3DSA:1.10.520.10 41 195 1.2E-71 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Gene3D G3DSA:1.10.520.10 726 747 3.2E-65 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 6 747 0.0 T 16-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PANTHER PTHR30555 1 198 0.0 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 279 302 9.8E-53 T 16-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 46 59 9.8E-53 T 16-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 61 86 9.8E-53 T 16-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 492 518 9.8E-53 T 16-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 20 42 9.8E-53 T 16-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Gene3D G3DSA:1.10.420.10 322 419 2.5E-47 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Gene3D G3DSA:1.10.420.10 265 286 2.5E-47 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PANTHER PTHR30555 221 747 0.0 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PANTHER PTHR30555:SF0 221 747 0.0 T 16-09-2016 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Pfam PF00141 Peroxidase 414 721 1.9E-39 T 16-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Pfam PF00141 Peroxidase 63 407 1.4E-48 T 16-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 SUPERFAMILY SSF48113 16 441 6.51E-147 T 16-09-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 Hamap MF_01961 Catalase-peroxidase [katG]. 2 748 42.031 T 16-09-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PRINTS PR00458 Haem peroxidase superfamily signature 162 174 1.7E-12 T 16-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PRINTS PR00458 Haem peroxidase superfamily signature 330 345 1.7E-12 T 16-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PRINTS PR00458 Haem peroxidase superfamily signature 84 98 1.7E-12 T 16-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 BER92_RS13245 c5fcf1e9c1cf089a2db6f9bf4a496e02 748 PRINTS PR00458 Haem peroxidase superfamily signature 144 161 1.7E-12 T 16-09-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 BER92_RS18895 870b34c530611fe93254e778a65147ed 357 PANTHER PTHR34142 1 340 5.2E-106 T 16-09-2016 BER92_RS18895 870b34c530611fe93254e778a65147ed 357 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 167 176 - T 16-09-2016 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 BER92_RS18895 870b34c530611fe93254e778a65147ed 357 SUPERFAMILY SSF51445 43 348 4.7E-80 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS18895 870b34c530611fe93254e778a65147ed 357 Gene3D G3DSA:3.20.20.80 43 351 2.4E-98 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS18895 870b34c530611fe93254e778a65147ed 357 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 48 321 1.4E-54 T 16-09-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BER92_RS13635 ea7bfc5a8891718fa80d718f54593ab7 424 Gene3D G3DSA:3.65.10.10 21 226 3.8E-67 T 16-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 BER92_RS13635 ea7bfc5a8891718fa80d718f54593ab7 424 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 423 47.165 T 16-09-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS13635 ea7bfc5a8891718fa80d718f54593ab7 424 SUPERFAMILY SSF55205 1 422 8.18E-143 T 16-09-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BER92_RS13635 ea7bfc5a8891718fa80d718f54593ab7 424 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 422 3.3E-176 T 16-09-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS13635 ea7bfc5a8891718fa80d718f54593ab7 424 Gene3D G3DSA:3.65.10.10 227 422 2.0E-61 T 16-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 BER92_RS13635 ea7bfc5a8891718fa80d718f54593ab7 424 PANTHER PTHR21090 1 423 1.5E-209 T 16-09-2016 BER92_RS13635 ea7bfc5a8891718fa80d718f54593ab7 424 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 413 5.2E-113 T 16-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 Pfam PF00919 Uncharacterized protein family UPF0004 37 142 3.0E-28 T 16-09-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 PANTHER PTHR11918 35 482 2.2E-204 T 16-09-2016 IPR023970 Methylthiotransferase/radical SAM-type protein BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 Pfam PF04055 Radical SAM superfamily 189 368 1.8E-27 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 37 480 7.0E-145 T 16-09-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 Pfam PF01938 TRAM domain 422 482 4.5E-19 T 16-09-2016 IPR002792 TRAM domain BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 37 482 5.4E-176 T 16-09-2016 BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 SUPERFAMILY SSF102114 167 415 4.45E-59 T 16-09-2016 BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 Gene3D G3DSA:3.80.30.20 183 422 6.2E-75 T 16-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 PANTHER PTHR11918:SF43 35 482 2.2E-204 T 16-09-2016 BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 36 483 72.556 T 16-09-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 189 209 - T 16-09-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 BER92_RS06870 d414ff3e81c6b2b97785858d2491eb59 489 SMART SM00729 185 410 6.5E-58 T 16-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 423 442 - T 16-09-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 SUPERFAMILY SSF52518 10 190 1.4E-61 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 Gene3D G3DSA:3.40.50.1220 190 356 2.6E-54 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 PANTHER PTHR18968 1 566 2.6E-259 T 16-09-2016 BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 SUPERFAMILY SSF52467 193 353 1.82E-53 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 Gene3D G3DSA:3.40.50.970 10 177 2.1E-74 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 332 3.0E-42 T 16-09-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 386 534 1.5E-48 T 16-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 11 558 9.8E-207 T 16-09-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 Gene3D G3DSA:3.40.50.970 357 561 1.7E-71 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 PANTHER PTHR18968:SF116 1 566 2.6E-259 T 16-09-2016 BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 SUPERFAMILY SSF52518 368 558 6.79E-66 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS03335 4799ff6078ca7f14d2906007f4d43165 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 11 175 3.0E-58 T 16-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 SMART SM00388 235 301 5.0E-18 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 Gene3D G3DSA:3.30.565.10 306 442 5.7E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 SUPERFAMILY SSF47384 218 301 8.24E-18 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 440 4.4E-14 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 Gene3D G3DSA:1.10.287.130 228 297 1.6E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 SMART SM00387 341 444 6.6E-23 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 Pfam PF00512 His Kinase A (phospho-acceptor) domain 237 301 3.4E-15 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 Pfam PF00672 HAMP domain 161 230 3.7E-9 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 PANTHER PTHR24423 14 27 1.9E-56 T 16-09-2016 BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 PANTHER PTHR24423 174 444 1.9E-56 T 16-09-2016 BER92_RS02350 a75e088d654c728553f80dc25dac48bc 444 SUPERFAMILY SSF55874 306 442 2.75E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS08915 c7881e04f655382ac92e3ea9f9959fae 395 PANTHER PTHR34298 1 395 8.6E-116 T 16-09-2016 BER92_RS08915 c7881e04f655382ac92e3ea9f9959fae 395 SUPERFAMILY SSF46785 85 160 7.26E-24 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08915 c7881e04f655382ac92e3ea9f9959fae 395 SUPERFAMILY SSF46785 6 82 6.8E-15 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08915 c7881e04f655382ac92e3ea9f9959fae 395 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 8 171 2.2E-33 T 16-09-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 BER92_RS08915 c7881e04f655382ac92e3ea9f9959fae 395 Gene3D G3DSA:1.10.10.10 4 82 7.7E-17 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08915 c7881e04f655382ac92e3ea9f9959fae 395 Pfam PF04079 Segregation and condensation complex subunit ScpB 8 169 2.4E-50 T 16-09-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 BER92_RS08915 c7881e04f655382ac92e3ea9f9959fae 395 PANTHER PTHR34298:SF2 1 395 8.6E-116 T 16-09-2016 BER92_RS08915 c7881e04f655382ac92e3ea9f9959fae 395 Gene3D G3DSA:1.10.10.10 84 160 1.0E-33 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08340 8415ad1d5ac5b99d8fc316110834ba66 175 Pfam PF12697 Alpha/beta hydrolase family 38 155 2.7E-6 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS08340 8415ad1d5ac5b99d8fc316110834ba66 175 Gene3D G3DSA:3.40.50.1820 3 173 2.7E-35 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS08340 8415ad1d5ac5b99d8fc316110834ba66 175 SUPERFAMILY SSF53474 4 172 1.68E-20 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS15720 5611321bad4886684e820af76fe9db0c 377 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 6 341 1.3E-132 T 16-09-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 BER92_RS15720 5611321bad4886684e820af76fe9db0c 377 Pfam PF00437 Type II/IV secretion system protein 9 260 4.2E-38 T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS15720 5611321bad4886684e820af76fe9db0c 377 Gene3D G3DSA:3.40.50.300 102 340 2.4E-63 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15720 5611321bad4886684e820af76fe9db0c 377 PANTHER PTHR30486 1 374 2.0E-168 T 16-09-2016 BER92_RS15720 5611321bad4886684e820af76fe9db0c 377 PANTHER PTHR30486:SF3 1 374 2.0E-168 T 16-09-2016 BER92_RS15720 5611321bad4886684e820af76fe9db0c 377 SUPERFAMILY SSF52540 7 337 5.33E-68 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17940 dd221ef628be6373663999df184bb895 142 Pfam PF00572 Ribosomal protein L13 15 138 2.4E-53 T 16-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BER92_RS17940 dd221ef628be6373663999df184bb895 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 16-09-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 BER92_RS17940 dd221ef628be6373663999df184bb895 142 PANTHER PTHR11545 1 142 9.4E-76 T 16-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BER92_RS17940 dd221ef628be6373663999df184bb895 142 Gene3D G3DSA:3.90.1180.10 3 141 3.3E-60 T 16-09-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 BER92_RS17940 dd221ef628be6373663999df184bb895 142 SUPERFAMILY SSF52161 1 140 1.31E-56 T 16-09-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 BER92_RS17940 dd221ef628be6373663999df184bb895 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 3 142 2.7E-61 T 16-09-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 BER92_RS17940 dd221ef628be6373663999df184bb895 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 27.33 T 16-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BER92_RS17940 dd221ef628be6373663999df184bb895 142 PIRSF PIRSF002181 1 142 6.9E-49 T 16-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 234 242 6.6E-5 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 112 121 6.6E-5 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 147 166 6.6E-5 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 Gene3D G3DSA:3.40.50.80 144 259 1.1E-25 T 16-09-2016 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 SUPERFAMILY SSF63380 34 139 4.31E-18 T 16-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 PANTHER PTHR19370:SF70 15 252 4.6E-46 T 16-09-2016 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 Gene3D G3DSA:3.10.20.30 260 357 1.2E-19 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 Pfam PF00175 Oxidoreductase NAD-binding domain 148 248 4.3E-15 T 16-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 PRINTS PR00406 Cytochrome B5 reductase signature 69 80 1.4E-7 T 16-09-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 PRINTS PR00406 Cytochrome B5 reductase signature 147 166 1.4E-7 T 16-09-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 PRINTS PR00406 Cytochrome B5 reductase signature 234 242 1.4E-7 T 16-09-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 PRINTS PR00406 Cytochrome B5 reductase signature 90 97 1.4E-7 T 16-09-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 PANTHER PTHR19370 15 252 4.6E-46 T 16-09-2016 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 Pfam PF00970 Oxidoreductase FAD-binding domain 45 136 4.2E-13 T 16-09-2016 IPR008333 Oxidoreductase, FAD-binding domain BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 SUPERFAMILY SSF54292 257 357 1.1E-18 T 16-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 Gene3D G3DSA:2.40.30.10 34 135 1.1E-16 T 16-09-2016 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 282 335 8.8E-6 T 16-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BER92_RS01555 de67663b31ab0539c58caef6fffe6750 358 SUPERFAMILY SSF52343 141 252 4.19E-27 T 16-09-2016 BER92_RS15275 6e2abf09387c52321c7bc7b07359d363 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS15275 6e2abf09387c52321c7bc7b07359d363 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS15275 6e2abf09387c52321c7bc7b07359d363 455 Pfam PF01609 Transposase DDE domain 284 421 2.0E-9 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS15275 6e2abf09387c52321c7bc7b07359d363 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS08660 36cf09aaa58088940e8d0b767f5a734c 193 PANTHER PTHR30173 1 179 1.3E-65 T 16-09-2016 BER92_RS08660 36cf09aaa58088940e8d0b767f5a734c 193 Gene3D G3DSA:1.10.10.10 119 179 3.7E-19 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS08660 36cf09aaa58088940e8d0b767f5a734c 193 PANTHER PTHR30173:SF31 1 179 1.3E-65 T 16-09-2016 BER92_RS08660 36cf09aaa58088940e8d0b767f5a734c 193 Pfam PF04545 Sigma-70, region 4 129 177 3.0E-11 T 16-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS08660 36cf09aaa58088940e8d0b767f5a734c 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 178 1.3E-19 T 16-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS08660 36cf09aaa58088940e8d0b767f5a734c 193 SUPERFAMILY SSF88946 5 115 2.43E-21 T 16-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS08660 36cf09aaa58088940e8d0b767f5a734c 193 Pfam PF04542 Sigma-70 region 2 30 93 3.3E-7 T 16-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS08660 36cf09aaa58088940e8d0b767f5a734c 193 SUPERFAMILY SSF88659 115 179 4.49E-15 T 16-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS08660 36cf09aaa58088940e8d0b767f5a734c 193 Gene3D G3DSA:1.10.1740.10 6 118 3.7E-23 T 16-09-2016 BER92_RS01025 70703a92a4318cddacf55a525ab3a86f 187 SUPERFAMILY SSF55821 7 185 2.5E-49 T 16-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain BER92_RS01025 70703a92a4318cddacf55a525ab3a86f 187 PANTHER PTHR17490:SF8 2 183 3.7E-95 T 16-09-2016 BER92_RS01025 70703a92a4318cddacf55a525ab3a86f 187 Pfam PF01300 Telomere recombination 13 186 5.2E-40 T 16-09-2016 IPR006070 YrdC-like domain GO:0003725 BER92_RS01025 70703a92a4318cddacf55a525ab3a86f 187 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 4 186 38.441 T 16-09-2016 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 BER92_RS01025 70703a92a4318cddacf55a525ab3a86f 187 Gene3D G3DSA:3.90.870.10 6 186 2.7E-54 T 16-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain BER92_RS01025 70703a92a4318cddacf55a525ab3a86f 187 PANTHER PTHR17490 2 183 3.7E-95 T 16-09-2016 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 Gene3D G3DSA:3.40.140.20 374 517 1.6E-56 T 16-09-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 PIRSF PIRSF000414 2 527 2.1E-210 T 16-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 Pfam PF01808 AICARFT/IMPCHase bienzyme 138 457 6.8E-112 T 16-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 Pfam PF02142 MGS-like domain 20 132 1.8E-24 T 16-09-2016 IPR011607 Methylglyoxal synthase-like domain BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 Gene3D G3DSA:3.40.140.20 252 368 1.3E-46 T 16-09-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 SMART SM00798 138 459 8.2E-188 T 16-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 Gene3D G3DSA:3.40.50.1380 7 191 4.4E-76 T 16-09-2016 IPR011607 Methylglyoxal synthase-like domain BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 8 527 44.368 T 16-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 PANTHER PTHR11692 6 527 6.8E-296 T 16-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 9 527 1.5E-216 T 16-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 SMART SM00851 20 133 5.2E-50 T 16-09-2016 IPR011607 Methylglyoxal synthase-like domain BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 SUPERFAMILY SSF53927 220 527 2.21E-125 T 16-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 PANTHER PTHR11692:SF2 6 527 6.8E-296 T 16-09-2016 BER92_RS16305 a4418157049c7446f3d9a821b4875162 527 SUPERFAMILY SSF52335 8 197 1.11E-63 T 16-09-2016 IPR011607 Methylglyoxal synthase-like domain BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 PANTHER PTHR23429:SF0 4 465 8.4E-156 T 16-09-2016 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 3 465 3.2E-136 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 SUPERFAMILY SSF55347 166 466 3.6E-95 T 16-09-2016 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 Gene3D G3DSA:3.30.360.10 176 464 8.0E-100 T 16-09-2016 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 SUPERFAMILY SSF51735 3 179 1.43E-43 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 PIRSF PIRSF000110 1 476 1.6E-161 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 156 184 3.5E-40 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 132 145 3.5E-40 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 313 339 3.5E-40 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 208 225 3.5E-40 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 226 242 3.5E-40 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 PANTHER PTHR23429 4 465 8.4E-156 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 Gene3D G3DSA:3.40.50.720 4 175 8.6E-48 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 179 465 2.0E-93 T 16-09-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 6 176 3.0E-43 T 16-09-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11585 87075d58be75c48794e104ac0a9370bb 476 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 2 467 67.99 T 16-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 BER92_RS11325 8b0a7bbade6d06c596c281082e5b7548 167 PANTHER PTHR37290 16 94 3.2E-18 T 16-09-2016 BER92_RS11325 8b0a7bbade6d06c596c281082e5b7548 167 PANTHER PTHR37290:SF1 16 94 3.2E-18 T 16-09-2016 BER92_RS11325 8b0a7bbade6d06c596c281082e5b7548 167 Pfam PF05360 yiaA/B two helix domain 34 77 1.4E-7 T 16-09-2016 IPR008024 YiaAB two helix BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 118 194 1.9E-10 T 16-09-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 6 273 1.7E-71 T 16-09-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 3 274 32.337 T 16-09-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 Gene3D G3DSA:3.40.192.10 4 107 9.0E-39 T 16-09-2016 BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 8 90 1.5E-25 T 16-09-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 PANTHER PTHR21089 3 282 6.5E-133 T 16-09-2016 BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 SUPERFAMILY SSF53223 4 102 1.21E-31 T 16-09-2016 BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 PANTHER PTHR21089:SF2 3 282 6.5E-133 T 16-09-2016 BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 Gene3D G3DSA:3.40.50.720 108 274 1.3E-40 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18530 1361a3342a1c43dc355de781537e4ad6 283 SUPERFAMILY SSF51735 103 273 1.81E-37 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 6 314 7.8E-93 T 16-09-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 16-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 SUPERFAMILY SSF53613 6 297 1.22E-58 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 PANTHER PTHR10584 1 315 1.7E-106 T 16-09-2016 BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 6 314 7.2E-91 T 16-09-2016 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 PIRSF PIRSF000535 2 317 1.1E-104 T 16-09-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 Pfam PF00294 pfkB family carbohydrate kinase 10 297 8.3E-55 T 16-09-2016 IPR011611 Carbohydrate kinase PfkB BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 254 267 - T 16-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 Gene3D G3DSA:3.40.1190.20 36 315 1.6E-72 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS12555 ea2929adb90206bcfddf406954cd6485 317 PANTHER PTHR10584:SF170 1 315 1.7E-106 T 16-09-2016 BER92_RS00255 03264b509b91cfa6e9193a06d0e4fafa 743 SUPERFAMILY SSF53659 4 741 0.0 T 16-09-2016 BER92_RS00255 03264b509b91cfa6e9193a06d0e4fafa 743 Gene3D G3DSA:3.40.718.10 539 646 1.3E-36 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS00255 03264b509b91cfa6e9193a06d0e4fafa 743 Gene3D G3DSA:3.40.718.10 147 285 1.3E-36 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS00255 03264b509b91cfa6e9193a06d0e4fafa 743 Gene3D G3DSA:3.40.718.10 340 363 1.3E-36 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS00255 03264b509b91cfa6e9193a06d0e4fafa 743 PANTHER PTHR36999 1 743 0.0 T 16-09-2016 BER92_RS00255 03264b509b91cfa6e9193a06d0e4fafa 743 PIRSF PIRSF009407 1 742 0.0 T 16-09-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 BER92_RS00255 03264b509b91cfa6e9193a06d0e4fafa 743 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 3 742 0.0 T 16-09-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 BER92_RS00255 03264b509b91cfa6e9193a06d0e4fafa 743 Pfam PF03971 Monomeric isocitrate dehydrogenase 6 738 0.0 T 16-09-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 148 221 1.0E-6 T 16-09-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 PIRSF PIRSF000292 1 310 3.0E-131 T 16-09-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 SUPERFAMILY SSF81464 30 117 8.5E-23 T 16-09-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 Gene3D G3DSA:2.60.40.420 114 278 2.6E-37 T 16-09-2016 IPR008972 Cupredoxin BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 15 238 3.8E-116 T 16-09-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 Gene3D G3DSA:1.10.287.90 29 112 1.2E-35 T 16-09-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 Pfam PF06481 COX Aromatic Rich Motif 238 285 6.6E-16 T 16-09-2016 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 SUPERFAMILY SSF49503 119 283 2.03E-46 T 16-09-2016 IPR008972 Cupredoxin BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 PANTHER PTHR22888:SF13 1 265 2.5E-152 T 16-09-2016 BER92_RS14810 3c1bedb8a22970c5260ad2582781bb2a 312 PANTHER PTHR22888 1 265 2.5E-152 T 16-09-2016 BER92_RS17650 93cfb4ee4674b393deb985228c057234 243 Pfam PF00156 Phosphoribosyl transferase domain 153 238 5.4E-7 T 16-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 BER92_RS17650 93cfb4ee4674b393deb985228c057234 243 SUPERFAMILY SSF53271 67 242 1.84E-31 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS17650 93cfb4ee4674b393deb985228c057234 243 PANTHER PTHR11907 1 243 2.8E-85 T 16-09-2016 BER92_RS17650 93cfb4ee4674b393deb985228c057234 243 PANTHER PTHR11907:SF9 1 243 2.8E-85 T 16-09-2016 BER92_RS17650 93cfb4ee4674b393deb985228c057234 243 Gene3D G3DSA:3.40.50.2020 74 242 3.4E-29 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS10940 0a25647af187fad382f616435e6a556a 303 SUPERFAMILY SSF63829 5 298 2.62E-59 T 16-09-2016 BER92_RS10940 0a25647af187fad382f616435e6a556a 303 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 20 267 3.3E-70 T 16-09-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region BER92_RS10940 0a25647af187fad382f616435e6a556a 303 Gene3D G3DSA:2.120.10.30 7 300 2.4E-81 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS10940 0a25647af187fad382f616435e6a556a 303 PANTHER PTHR10907:SF47 3 300 8.3E-77 T 16-09-2016 BER92_RS10940 0a25647af187fad382f616435e6a556a 303 PANTHER PTHR10907 3 300 8.3E-77 T 16-09-2016 BER92_RS10940 0a25647af187fad382f616435e6a556a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 249 267 8.2E-28 T 16-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) BER92_RS10940 0a25647af187fad382f616435e6a556a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 207 224 8.2E-28 T 16-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) BER92_RS10940 0a25647af187fad382f616435e6a556a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 20 37 8.2E-28 T 16-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) BER92_RS10940 0a25647af187fad382f616435e6a556a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 101 122 8.2E-28 T 16-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) BER92_RS10940 0a25647af187fad382f616435e6a556a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 144 166 8.2E-28 T 16-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) BER92_RS10940 0a25647af187fad382f616435e6a556a 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 167 187 8.2E-28 T 16-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 5.8E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 5.8E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 5.8E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 5.8E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 5.8E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 5.8E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PANTHER PTHR24322:SF328 14 142 4.5E-46 T 16-09-2016 BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PANTHER PTHR24322:SF328 158 190 4.5E-46 T 16-09-2016 BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PANTHER PTHR24322 14 142 4.5E-46 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PANTHER PTHR24322 158 190 4.5E-46 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 5 253 1.7E-121 T 16-09-2016 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.12+1.1.1.127|MetaCyc: PWY-5515|MetaCyc: PWY-6507|MetaCyc: PWY-7562 BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 SUPERFAMILY SSF51735 5 252 1.93E-73 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.8E-12 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.8E-12 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.8E-12 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 Gene3D G3DSA:3.40.50.720 5 252 5.6E-79 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18750 c16ccf066cfa936eeeb63c112428f31b 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 250 2.3E-55 T 16-09-2016 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 450 5.7E-59 T 16-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 SUPERFAMILY SSF53067 5 255 5.67E-96 T 16-09-2016 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 Hamap MF_00186 Glycerol kinase [glpK]. 3 497 58.394 T 16-09-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 PANTHER PTHR10196 1 497 8.1E-254 T 16-09-2016 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 PIRSF PIRSF000538 3 498 6.3E-177 T 16-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 SUPERFAMILY SSF53067 255 494 1.66E-82 T 16-09-2016 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 362 382 - T 16-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 Gene3D G3DSA:3.30.420.40 254 496 7.0E-99 T 16-09-2016 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 495 1.6E-219 T 16-09-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 252 1.0E-86 T 16-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 Gene3D G3DSA:3.30.420.40 1 253 3.4E-107 T 16-09-2016 BER92_RS17755 5782a4bb551cce4a199070d4dd2ce25f 499 PANTHER PTHR10196:SF9 1 497 8.1E-254 T 16-09-2016 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 Pfam PF01556 DnaJ C terminal domain 121 331 5.5E-40 T 16-09-2016 IPR002939 Chaperone DnaJ, C-terminal BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 SUPERFAMILY SSF49493 257 342 4.71E-20 T 16-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 PANTHER PTHR24078:SF231 1 346 8.6E-149 T 16-09-2016 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 SUPERFAMILY SSF57938 133 209 1.03E-19 T 16-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 SMART SM00271 4 62 7.6E-30 T 16-09-2016 IPR001623 DnaJ domain BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 347 5.6E-124 T 16-09-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 Gene3D G3DSA:1.10.287.110 1 103 9.0E-35 T 16-09-2016 IPR001623 DnaJ domain BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 PANTHER PTHR24078 1 346 8.6E-149 T 16-09-2016 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 PRINTS PR00625 DnaJ domain signature 7 25 5.5E-28 T 16-09-2016 IPR001623 DnaJ domain BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 PRINTS PR00625 DnaJ domain signature 42 62 5.5E-28 T 16-09-2016 IPR001623 DnaJ domain BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 PRINTS PR00625 DnaJ domain signature 25 40 5.5E-28 T 16-09-2016 IPR001623 DnaJ domain BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 PRINTS PR00625 DnaJ domain signature 62 81 5.5E-28 T 16-09-2016 IPR001623 DnaJ domain BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 SUPERFAMILY SSF46565 1 106 1.31E-33 T 16-09-2016 IPR001623 DnaJ domain BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 Gene3D G3DSA:2.10.230.10 137 197 1.6E-20 T 16-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 Pfam PF00226 DnaJ domain 5 67 2.5E-25 T 16-09-2016 IPR001623 DnaJ domain BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 Gene3D G3DSA:2.60.260.20 254 331 1.9E-20 T 16-09-2016 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 Gene3D G3DSA:2.60.260.20 110 136 5.7E-21 T 16-09-2016 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 Gene3D G3DSA:2.60.260.20 198 251 5.7E-21 T 16-09-2016 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 371 39.103 T 16-09-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 SUPERFAMILY SSF49493 113 137 2.75E-18 T 16-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 SUPERFAMILY SSF49493 184 257 2.75E-18 T 16-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BER92_RS07975 b34547ca8934b14c7f66d39e599ca2d8 377 Pfam PF00684 DnaJ central domain 146 205 3.1E-12 T 16-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 BER92_RS16555 489ad99d764fd39fdb3620015f77ba2d 327 PANTHER PTHR11732 2 314 5.6E-129 T 16-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta BER92_RS16555 489ad99d764fd39fdb3620015f77ba2d 327 Gene3D G3DSA:3.20.20.100 3 315 3.9E-91 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS16555 489ad99d764fd39fdb3620015f77ba2d 327 PANTHER PTHR11732:SF132 2 314 5.6E-129 T 16-09-2016 BER92_RS16555 489ad99d764fd39fdb3620015f77ba2d 327 SUPERFAMILY SSF51430 3 314 4.71E-91 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS16555 489ad99d764fd39fdb3620015f77ba2d 327 Pfam PF00248 Aldo/keto reductase family 16 314 4.6E-66 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 SUPERFAMILY SSF52172 9 134 1.99E-40 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 Gene3D G3DSA:1.10.10.10 134 229 2.5E-22 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 PANTHER PTHR26402 9 231 1.5E-83 T 16-09-2016 BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 Gene3D G3DSA:3.40.50.2300 5 131 2.4E-40 T 16-09-2016 BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 229 1.6E-17 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 SMART SM00862 155 229 6.3E-16 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 SMART SM00448 9 121 3.1E-41 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 SUPERFAMILY SSF46894 130 229 7.65E-22 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 Pfam PF00072 Response regulator receiver domain 11 121 1.1E-28 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04625 d7384db0ec93ad4d6927b09ff72b30e6 237 PANTHER PTHR26402:SF292 9 231 1.5E-83 T 16-09-2016 BER92_RS03375 a8e52018305b75c353cd35aacbf8282a 297 SUPERFAMILY SSF46689 225 275 7.17E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03375 a8e52018305b75c353cd35aacbf8282a 297 SMART SM00342 189 272 7.2E-14 T 16-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BER92_RS03375 a8e52018305b75c353cd35aacbf8282a 297 Gene3D G3DSA:1.10.10.60 174 226 2.0E-7 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03375 a8e52018305b75c353cd35aacbf8282a 297 PANTHER PTHR11019 42 280 4.5E-36 T 16-09-2016 BER92_RS03375 a8e52018305b75c353cd35aacbf8282a 297 PANTHER PTHR11019:SF50 42 280 4.5E-36 T 16-09-2016 BER92_RS03375 a8e52018305b75c353cd35aacbf8282a 297 Pfam PF12833 Helix-turn-helix domain 195 273 2.2E-17 T 16-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BER92_RS03375 a8e52018305b75c353cd35aacbf8282a 297 Gene3D G3DSA:1.10.10.60 227 279 2.3E-15 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS15220 0438dc17d9d388bf35f4319d80a8897c 284 Pfam PF13276 HTH-like domain 41 91 2.0E-13 T 16-09-2016 IPR025948 HTH-like domain BER92_RS15220 0438dc17d9d388bf35f4319d80a8897c 284 Pfam PF00665 Integrase core domain 119 233 9.2E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS15220 0438dc17d9d388bf35f4319d80a8897c 284 SUPERFAMILY SSF53098 112 277 8.47E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS15220 0438dc17d9d388bf35f4319d80a8897c 284 Gene3D G3DSA:3.30.420.10 113 272 2.1E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS15220 0438dc17d9d388bf35f4319d80a8897c 284 PANTHER PTHR32552 12 282 9.2E-86 T 16-09-2016 BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 PANTHER PTHR32305 1 497 5.2E-43 T 16-09-2016 BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 564 668 5.1E-34 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 SUPERFAMILY SSF69255 400 494 4.45E-25 T 16-09-2016 BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 20 500 4.5E-74 T 16-09-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 SUPERFAMILY SSF69279 372 389 4.08E-10 T 16-09-2016 BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 SUPERFAMILY SSF69279 218 335 4.08E-10 T 16-09-2016 BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 20 499 1.2E-83 T 16-09-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 Gene3D G3DSA:2.40.50.230 407 494 1.5E-29 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 Pfam PF05954 Phage late control gene D protein (GPD) 28 333 3.6E-71 T 16-09-2016 BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 Gene3D G3DSA:3.55.50.10 96 196 1.6E-27 T 16-09-2016 BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 SUPERFAMILY SSF69279 15 190 3.34E-47 T 16-09-2016 BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 729 885 1.0E-34 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS11320 7cee3042ddbbf70bb5003cda307d59c0 970 PANTHER PTHR32305:SF7 1 497 5.2E-43 T 16-09-2016 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 Pfam PF04073 Aminoacyl-tRNA editing domain 256 375 2.1E-30 T 16-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 PANTHER PTHR11451 395 562 1.2E-141 T 16-09-2016 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 PANTHER PTHR11451 4 244 1.2E-141 T 16-09-2016 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 6.8E-16 T 16-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 6.8E-16 T 16-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 6.8E-16 T 16-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 6.8E-16 T 16-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 563 39.037 T 16-09-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 556 2.9E-211 T 16-09-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 Gene3D G3DSA:3.40.50.800 469 558 2.4E-20 T 16-09-2016 IPR004154 Anticodon-binding BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 Gene3D G3DSA:3.30.930.10 11 234 6.2E-99 T 16-09-2016 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 Gene3D G3DSA:3.30.930.10 386 468 6.2E-99 T 16-09-2016 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 PANTHER PTHR11451:SF3 395 562 1.2E-141 T 16-09-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 PANTHER PTHR11451:SF3 4 244 1.2E-141 T 16-09-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 SUPERFAMILY SSF52954 460 562 5.56E-23 T 16-09-2016 IPR004154 Anticodon-binding BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 SUPERFAMILY SSF55826 219 386 4.32E-33 T 16-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 Gene3D G3DSA:3.90.960.10 254 385 5.0E-31 T 16-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 Pfam PF03129 Anticodon binding domain 474 554 1.4E-12 T 16-09-2016 IPR004154 Anticodon-binding BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 455 1.2E-45 T 16-09-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 SUPERFAMILY SSF55681 403 474 4.61E-99 T 16-09-2016 BER92_RS15525 24c020b387aa03d6c9be72cd639eef05 564 SUPERFAMILY SSF55681 10 237 4.61E-99 T 16-09-2016 BER92_RS06635 c4c28fb5a0c3d6f887e6cc23040f57da 228 Pfam PF00484 Carbonic anhydrase 74 223 1.9E-37 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS06635 c4c28fb5a0c3d6f887e6cc23040f57da 228 Gene3D G3DSA:3.40.1050.10 20 227 1.7E-53 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS06635 c4c28fb5a0c3d6f887e6cc23040f57da 228 PANTHER PTHR11002 31 228 2.7E-81 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS06635 c4c28fb5a0c3d6f887e6cc23040f57da 228 SMART SM00947 66 227 4.6E-48 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS06635 c4c28fb5a0c3d6f887e6cc23040f57da 228 SUPERFAMILY SSF53056 22 227 2.88E-51 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS06635 c4c28fb5a0c3d6f887e6cc23040f57da 228 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 115 135 - T 16-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS06635 c4c28fb5a0c3d6f887e6cc23040f57da 228 PANTHER PTHR11002:SF17 31 228 2.7E-81 T 16-09-2016 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 SUPERFAMILY SSF161093 273 450 2.75E-47 T 16-09-2016 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 PANTHER PTHR11911 102 410 2.9E-43 T 16-09-2016 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 Gene3D G3DSA:3.10.580.10 118 252 1.9E-17 T 16-09-2016 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 Pfam PF01769 Divalent cation transporter 313 444 2.8E-30 T 16-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 TIGRFAM TIGR00400 mgtE: magnesium transporter 10 451 3.0E-100 T 16-09-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 SMART SM00116 198 246 6.8E-11 T 16-09-2016 IPR000644 CBS domain BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 Pfam PF00571 CBS domain 195 245 6.2E-9 T 16-09-2016 IPR000644 CBS domain BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 Gene3D G3DSA:1.10.357.20 273 451 1.8E-58 T 16-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 SUPERFAMILY SSF54631 124 266 7.21E-27 T 16-09-2016 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 SUPERFAMILY SSF158791 10 122 3.92E-18 T 16-09-2016 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 Gene3D G3DSA:1.25.60.10 9 117 2.5E-17 T 16-09-2016 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 Pfam PF03448 MgtE intracellular N domain 23 123 3.9E-19 T 16-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 PANTHER PTHR11911:SF23 102 410 2.9E-43 T 16-09-2016 BER92_RS01790 c4462c6144352c2a8c9cab2b702daefd 455 SMART SM00924 22 125 4.8E-23 T 16-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain BER92_RS03095 acdf85500387949f657839972473ae57 423 Pfam PF00155 Aminotransferase class I and II 39 389 2.6E-51 T 16-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BER92_RS03095 acdf85500387949f657839972473ae57 423 Gene3D G3DSA:3.40.640.10 56 286 8.8E-69 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS03095 acdf85500387949f657839972473ae57 423 PANTHER PTHR11751:SF303 14 406 1.9E-160 T 16-09-2016 BER92_RS03095 acdf85500387949f657839972473ae57 423 Gene3D G3DSA:3.90.1150.10 287 406 5.8E-25 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS03095 acdf85500387949f657839972473ae57 423 PANTHER PTHR11751 14 406 1.9E-160 T 16-09-2016 BER92_RS03095 acdf85500387949f657839972473ae57 423 SUPERFAMILY SSF53383 10 405 2.26E-90 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 689 711 - T 16-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PANTHER PTHR11573 63 528 3.2E-287 T 16-09-2016 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 SUPERFAMILY SSF48168 71 292 1.57E-48 T 16-09-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 211 819 2.6E-167 T 16-09-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 SUPERFAMILY SSF51998 293 821 1.4E-162 T 16-09-2016 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PANTHER PTHR11573 548 827 3.2E-287 T 16-09-2016 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 Pfam PF02867 Ribonucleotide reductase, barrel domain 294 816 1.9E-144 T 16-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 573 596 4.0E-37 T 16-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 639 662 4.0E-37 T 16-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 700 727 4.0E-37 T 16-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 369 388 4.0E-37 T 16-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 512 523 4.0E-37 T 16-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 611 633 4.0E-37 T 16-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 Gene3D G3DSA:3.20.70.20 478 659 1.2E-61 T 16-09-2016 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 Gene3D G3DSA:3.20.70.20 201 415 1.2E-61 T 16-09-2016 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 Gene3D G3DSA:3.20.70.20 700 818 1.2E-61 T 16-09-2016 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PANTHER PTHR11573:SF6 548 827 3.2E-287 T 16-09-2016 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 PANTHER PTHR11573:SF6 63 528 3.2E-287 T 16-09-2016 BER92_RS01805 90fc49e0e66a0a10e197a3bf2ae1335f 832 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 208 290 1.8E-14 T 16-09-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 SUPERFAMILY SSF47323 435 562 2.75E-34 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 160 173 1.9E-22 T 16-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 136 152 1.9E-22 T 16-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 121 136 1.9E-22 T 16-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 308 329 1.9E-22 T 16-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 Pfam PF05746 DALR anticodon binding domain 441 562 2.5E-34 T 16-09-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 30 562 3.3E-126 T 16-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 SMART SM00836 441 562 5.3E-52 T 16-09-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 562 25.433 T 16-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 PANTHER PTHR11956 1 562 3.8E-247 T 16-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 131 140 - T 16-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 Gene3D G3DSA:3.30.1360.70 2 111 8.5E-32 T 16-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 Gene3D G3DSA:1.10.730.10 447 562 8.3E-41 T 16-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 Gene3D G3DSA:3.40.50.620 117 446 5.7E-106 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 SMART SM01016 3 92 3.4E-40 T 16-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 SUPERFAMILY SSF52374 117 452 6.76E-90 T 16-09-2016 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 5 92 3.9E-25 T 16-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 SUPERFAMILY SSF55190 4 112 1.44E-26 T 16-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 PANTHER PTHR11956:SF6 1 562 3.8E-247 T 16-09-2016 BER92_RS18425 84f529c296bd6115f23e06ab48f27bc8 562 Pfam PF00750 tRNA synthetases class I (R) 101 410 2.2E-24 T 16-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 BER92_RS17020 d1db78f5559f8088c136455fde3ee226 322 PANTHER PTHR35604:SF2 2 322 1.3E-241 T 16-09-2016 BER92_RS17020 d1db78f5559f8088c136455fde3ee226 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.4E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS17020 d1db78f5559f8088c136455fde3ee226 322 Pfam PF01609 Transposase DDE domain 135 310 2.9E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS17020 d1db78f5559f8088c136455fde3ee226 322 PANTHER PTHR35604 2 322 1.3E-241 T 16-09-2016 BER92_RS12775 99885f1d8effedda7a0383ef733698b7 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 1.2E-53 T 16-09-2016 IPR016051 Ribosomal RNA large subunit methyltransferase H GO:0005737|GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS12775 99885f1d8effedda7a0383ef733698b7 156 PANTHER PTHR33603:SF1 1 155 3.6E-65 T 16-09-2016 BER92_RS12775 99885f1d8effedda7a0383ef733698b7 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 27.973 T 16-09-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS12775 99885f1d8effedda7a0383ef733698b7 156 Gene3D G3DSA:3.40.1280.10 1 155 2.4E-53 T 16-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER92_RS12775 99885f1d8effedda7a0383ef733698b7 156 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 5.1E-48 T 16-09-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS12775 99885f1d8effedda7a0383ef733698b7 156 SUPERFAMILY SSF75217 1 153 1.05E-47 T 16-09-2016 IPR029028 Alpha/beta knot methyltransferases BER92_RS12775 99885f1d8effedda7a0383ef733698b7 156 PIRSF PIRSF004505 1 155 9.6E-46 T 16-09-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS12775 99885f1d8effedda7a0383ef733698b7 156 PANTHER PTHR33603 1 155 3.6E-65 T 16-09-2016 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 Gene3D G3DSA:3.30.870.10 336 518 3.5E-73 T 16-09-2016 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 SUPERFAMILY SSF140356 24 126 5.75E-34 T 16-09-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 Pfam PF13090 Polyphosphate kinase C-terminal domain 349 696 3.7E-148 T 16-09-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 PANTHER PTHR30218 1 700 0.0 T 16-09-2016 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 Pfam PF02503 Polyphosphate kinase middle domain 141 342 3.2E-58 T 16-09-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 27 698 2.3E-278 T 16-09-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 PANTHER PTHR30218:SF0 1 700 0.0 T 16-09-2016 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 Hamap MF_00347 Polyphosphate kinase [ppk]. 24 700 31.88 T 16-09-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 SUPERFAMILY SSF56024 335 511 2.35E-55 T 16-09-2016 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 Pfam PF13089 Polyphosphate kinase N-terminal domain 27 131 3.5E-30 T 16-09-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 SUPERFAMILY SSF56024 519 699 2.92E-68 T 16-09-2016 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 SUPERFAMILY SSF143724 131 335 4.71E-58 T 16-09-2016 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 PIRSF PIRSF015589 7 700 6.7E-262 T 16-09-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 Gene3D G3DSA:3.30.1840.10 129 320 3.1E-62 T 16-09-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 BER92_RS15315 134d4af819715cc92102a7544910fc08 700 Gene3D G3DSA:3.30.870.10 519 699 6.4E-70 T 16-09-2016 BER92_RS03300 ba602c7ce6b6cce4bcebbd89d7682582 215 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 43.977 T 16-09-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03300 ba602c7ce6b6cce4bcebbd89d7682582 215 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 4.6E-87 T 16-09-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03300 ba602c7ce6b6cce4bcebbd89d7682582 215 PANTHER PTHR11670:SF27 1 208 2.1E-108 T 16-09-2016 BER92_RS03300 ba602c7ce6b6cce4bcebbd89d7682582 215 Pfam PF00694 Aconitase C-terminal domain 1 130 1.9E-37 T 16-09-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03300 ba602c7ce6b6cce4bcebbd89d7682582 215 PANTHER PTHR11670 1 208 2.1E-108 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03300 ba602c7ce6b6cce4bcebbd89d7682582 215 Gene3D G3DSA:3.20.19.10 1 200 5.8E-50 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS03300 ba602c7ce6b6cce4bcebbd89d7682582 215 SUPERFAMILY SSF52016 1 201 3.34E-63 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 Gene3D G3DSA:3.30.70.270 221 317 5.7E-31 T 16-09-2016 BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 SMART SM00065 46 189 1.5E-5 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 PANTHER PTHR33121 27 178 6.9E-44 T 16-09-2016 BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 Pfam PF01590 GAF domain 49 176 2.7E-9 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 SUPERFAMILY SSF55073 225 319 1.8E-27 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 Pfam PF00990 Diguanylate cyclase, GGDEF domain 221 314 1.7E-26 T 16-09-2016 IPR000160 GGDEF domain BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 SUPERFAMILY SSF55781 48 191 1.7E-23 T 16-09-2016 IPR029016 GAF domain-like BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 PANTHER PTHR33121:SF12 27 178 6.9E-44 T 16-09-2016 BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 Gene3D G3DSA:3.30.450.40 49 180 4.2E-10 T 16-09-2016 IPR029016 GAF domain-like BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 218 315 2.0E-28 T 16-09-2016 IPR000160 GGDEF domain BER92_RS13055 6e95f784fab21d4d03e85e0091fedb41 376 SMART SM00267 209 371 1.7E-17 T 16-09-2016 IPR000160 GGDEF domain BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 PANTHER PTHR10072:SF37 1 99 4.2E-79 T 16-09-2016 BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 Gene3D G3DSA:2.60.300.12 1 99 3.8E-10 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 SUPERFAMILY SSF89360 1 99 4.32E-15 T 16-09-2016 IPR000361 FeS cluster biogenesis BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 SUPERFAMILY SSF117916 103 186 1.35E-22 T 16-09-2016 BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 PANTHER PTHR10072 1 99 4.2E-79 T 16-09-2016 BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 PANTHER PTHR10072 149 190 4.2E-79 T 16-09-2016 BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 120 179 9.0E-28 T 16-09-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 PANTHER PTHR10072:SF37 149 190 4.2E-79 T 16-09-2016 BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 193 39.276 T 16-09-2016 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 BER92_RS09680 a048e33fbdbf9e49d33ac51b786d74f8 199 Pfam PF01106 NifU-like domain 115 179 1.3E-19 T 16-09-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 Gene3D G3DSA:3.40.50.1820 201 312 8.1E-48 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 Gene3D G3DSA:3.40.50.1820 80 165 8.1E-48 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 Gene3D G3DSA:3.40.50.1820 380 478 8.1E-48 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 PANTHER PTHR10992 98 166 1.9E-103 T 16-09-2016 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 PANTHER PTHR10992:SF874 200 301 1.9E-103 T 16-09-2016 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 Pfam PF00561 alpha/beta hydrolase fold 117 259 3.1E-15 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 PANTHER PTHR10992 200 301 1.9E-103 T 16-09-2016 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 SUPERFAMILY SSF53474 203 257 3.75E-29 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 SUPERFAMILY SSF53474 109 166 3.75E-29 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 SUPERFAMILY SSF53474 388 477 3.75E-29 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 118 126 1.8E-5 T 16-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 149 160 1.8E-5 T 16-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 227 241 1.8E-5 T 16-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 Pfam PF08386 TAP-like protein 413 502 1.2E-15 T 16-09-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 PANTHER PTHR10992:SF874 98 166 1.9E-103 T 16-09-2016 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 PANTHER PTHR10992:SF874 378 494 1.9E-103 T 16-09-2016 BER92_RS00625 0326b11917a74c19d6eead6d2761515d 520 PANTHER PTHR10992 378 494 1.9E-103 T 16-09-2016 BER92_RS13365 401e46815da4f889dcccf3e91a22fd96 332 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 91 105 - T 16-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 BER92_RS13365 401e46815da4f889dcccf3e91a22fd96 332 Pfam PF00348 Polyprenyl synthetase 42 273 7.2E-75 T 16-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 BER92_RS13365 401e46815da4f889dcccf3e91a22fd96 332 PANTHER PTHR12001 18 332 5.5E-110 T 16-09-2016 IPR017446 Polyprenyl synthetase-related BER92_RS13365 401e46815da4f889dcccf3e91a22fd96 332 Gene3D G3DSA:1.10.600.10 16 331 2.7E-101 T 16-09-2016 IPR008949 Isoprenoid synthase domain BER92_RS13365 401e46815da4f889dcccf3e91a22fd96 332 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 213 225 - T 16-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 BER92_RS13365 401e46815da4f889dcccf3e91a22fd96 332 SUPERFAMILY SSF48576 15 331 1.92E-98 T 16-09-2016 IPR008949 Isoprenoid synthase domain BER92_RS13365 401e46815da4f889dcccf3e91a22fd96 332 PANTHER PTHR12001:SF47 18 332 5.5E-110 T 16-09-2016 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 166 312 4.2E-21 T 16-09-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 Gene3D G3DSA:3.40.50.1370 154 293 7.0E-45 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PANTHER PTHR11405 1 315 1.4E-122 T 16-09-2016 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 Gene3D G3DSA:3.40.50.1370 13 153 1.5E-43 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 59 66 - T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 13 314 2.7E-83 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 12 315 39.074 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 59 78 4.4E-21 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 279 302 4.4E-21 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 145 156 4.4E-21 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 4.4E-21 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PANTHER PTHR11405:SF16 1 315 1.4E-122 T 16-09-2016 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 SUPERFAMILY SSF53671 11 315 1.57E-87 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 13 157 1.6E-35 T 16-09-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 49 71 2.1E-31 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 87 96 2.1E-31 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 295 309 2.1E-31 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 144 161 2.1E-31 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 271 276 2.1E-31 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS13415 04b9c7e1b38f0647a723ee3a80d7fbe2 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 230 239 2.1E-31 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 Gene3D G3DSA:3.40.50.300 500 712 1.5E-53 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 SUPERFAMILY SSF90123 173 485 3.79E-50 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 PANTHER PTHR24221 168 693 1.8E-92 T 16-09-2016 BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 Gene3D G3DSA:3.90.70.10 38 157 2.1E-24 T 16-09-2016 BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 SMART SM00382 527 713 6.8E-12 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 Gene3D G3DSA:1.20.1560.10 184 484 2.1E-52 T 16-09-2016 BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 Pfam PF00005 ABC transporter 521 666 2.7E-27 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 ProSitePatterns PS00211 ABC transporters family signature. 639 653 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 Pfam PF00664 ABC transporter transmembrane region 187 454 1.4E-30 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 Pfam PF03412 Peptidase C39 family 31 158 9.8E-34 T 16-09-2016 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 BER92_RS05540 50c6a06d3f8fdb7824c1eee9d05f657e 736 SUPERFAMILY SSF52540 499 712 2.26E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17590 6def6a14ca0974eaf86c36344ef0f207 644 PANTHER PTHR32438 117 639 4.5E-113 T 16-09-2016 BER92_RS17590 6def6a14ca0974eaf86c36344ef0f207 644 PANTHER PTHR32438:SF5 117 639 4.5E-113 T 16-09-2016 BER92_RS17590 6def6a14ca0974eaf86c36344ef0f207 644 Pfam PF02446 4-alpha-glucanotransferase 153 298 1.9E-14 T 16-09-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 BER92_RS17590 6def6a14ca0974eaf86c36344ef0f207 644 Pfam PF02446 4-alpha-glucanotransferase 306 615 3.0E-70 T 16-09-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 BER92_RS17590 6def6a14ca0974eaf86c36344ef0f207 644 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 303 628 3.0E-63 T 16-09-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 BER92_RS17590 6def6a14ca0974eaf86c36344ef0f207 644 Gene3D G3DSA:3.20.20.80 304 620 7.8E-99 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17590 6def6a14ca0974eaf86c36344ef0f207 644 Gene3D G3DSA:3.20.20.80 145 297 3.0E-26 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17590 6def6a14ca0974eaf86c36344ef0f207 644 SUPERFAMILY SSF51445 147 620 2.11E-116 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS03485 b417f9c6fb44b458f2d797c1624dad16 206 PANTHER PTHR20857:SF15 1 202 5.6E-58 T 16-09-2016 BER92_RS03485 b417f9c6fb44b458f2d797c1624dad16 206 Pfam PF02581 Thiamine monophosphate synthase/TENI 10 188 1.1E-51 T 16-09-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 BER92_RS03485 b417f9c6fb44b458f2d797c1624dad16 206 SUPERFAMILY SSF51391 8 202 2.22E-53 T 16-09-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 BER92_RS03485 b417f9c6fb44b458f2d797c1624dad16 206 PANTHER PTHR20857 1 202 5.6E-58 T 16-09-2016 BER92_RS03485 b417f9c6fb44b458f2d797c1624dad16 206 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 8 206 24.535 T 16-09-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 BER92_RS03485 b417f9c6fb44b458f2d797c1624dad16 206 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 10 199 4.9E-57 T 16-09-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 BER92_RS03485 b417f9c6fb44b458f2d797c1624dad16 206 Gene3D G3DSA:3.20.20.70 8 203 2.2E-56 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS04320 f31a1828bd437e08d7141a76f44db07a 155 PANTHER PTHR36115 1 152 5.9E-55 T 16-09-2016 BER92_RS04320 f31a1828bd437e08d7141a76f44db07a 155 PANTHER PTHR36115:SF2 1 152 5.9E-55 T 16-09-2016 BER92_RS04320 f31a1828bd437e08d7141a76f44db07a 155 Pfam PF06271 RDD family 14 144 1.1E-17 T 16-09-2016 IPR010432 RDD BER92_RS03585 4ca06d071ce340142dfa7520fe16995c 99 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 63 17.87 T 16-09-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS03585 4ca06d071ce340142dfa7520fe16995c 99 Gene3D G3DSA:3.90.940.10 1 77 8.4E-17 T 16-09-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS03585 4ca06d071ce340142dfa7520fe16995c 99 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 2.8E-20 T 16-09-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS03585 4ca06d071ce340142dfa7520fe16995c 99 PANTHER PTHR34476 2 92 1.3E-26 T 16-09-2016 BER92_RS03585 4ca06d071ce340142dfa7520fe16995c 99 SUPERFAMILY SSF63562 1 77 1.96E-24 T 16-09-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS03585 4ca06d071ce340142dfa7520fe16995c 99 Pfam PF01192 RNA polymerase Rpb6 8 60 7.6E-16 T 16-09-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS03585 4ca06d071ce340142dfa7520fe16995c 99 SMART SM01409 8 62 5.1E-16 T 16-09-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 PANTHER PTHR24423 134 432 2.1E-63 T 16-09-2016 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 PANTHER PTHR24423 6 22 2.1E-63 T 16-09-2016 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 259 361 1.8E-16 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 SMART SM00448 11 122 4.4E-20 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 SMART SM00448 381 493 0.13 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 SUPERFAMILY SSF55874 206 363 1.44E-35 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 294 308 1.5E-17 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 360 1.5E-17 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 322 1.5E-17 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 341 1.5E-17 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 SUPERFAMILY SSF47384 145 213 4.9E-7 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 SMART SM00387 256 363 2.9E-27 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 SUPERFAMILY SSF52172 379 498 5.27E-13 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 SUPERFAMILY SSF52172 9 143 2.42E-26 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 Gene3D G3DSA:3.40.50.2300 378 498 2.5E-11 T 16-09-2016 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 SMART SM00388 150 215 4.0E-4 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 Gene3D G3DSA:3.30.565.10 217 362 3.8E-36 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 Gene3D G3DSA:3.40.50.2300 10 141 1.7E-23 T 16-09-2016 BER92_RS02895 0d0a4cd97ce012968b3bc690816c7d2a 500 Pfam PF00072 Response regulator receiver domain 13 122 8.4E-17 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 Gene3D G3DSA:3.10.20.310 268 329 7.1E-4 T 16-09-2016 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 31 788 8.6E-245 T 16-09-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 1 788 25.437 T 16-09-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 PIRSF PIRSF006076 1 788 1.1E-253 T 16-09-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 Pfam PF01103 Surface antigen 454 788 3.0E-93 T 16-09-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 Pfam PF07244 Surface antigen variable number repeat 99 178 2.8E-12 T 16-09-2016 IPR010827 Surface antigen variable number GO:0019867 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 Pfam PF07244 Surface antigen variable number repeat 272 350 9.7E-12 T 16-09-2016 IPR010827 Surface antigen variable number GO:0019867 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 Pfam PF07244 Surface antigen variable number repeat 182 269 1.7E-11 T 16-09-2016 IPR010827 Surface antigen variable number GO:0019867 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 Pfam PF07244 Surface antigen variable number repeat 353 426 3.5E-15 T 16-09-2016 IPR010827 Surface antigen variable number GO:0019867 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 PANTHER PTHR12815 11 788 5.1E-262 T 16-09-2016 BER92_RS06395 295e7bb160a638ed5fef6eb65694bf14 788 PANTHER PTHR12815:SF11 11 788 5.1E-262 T 16-09-2016 BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 SUPERFAMILY SSF48179 345 458 1.96E-16 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 195 293 7.8E-10 T 16-09-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 SUPERFAMILY SSF48179 193 312 6.97E-20 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 Gene3D G3DSA:1.10.1040.10 352 437 1.1E-8 T 16-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 Gene3D G3DSA:1.10.1040.10 196 295 7.3E-12 T 16-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 SUPERFAMILY SSF51735 7 193 8.75E-40 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 SUPERFAMILY SSF52096 473 787 4.98E-36 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 PANTHER PTHR23309 7 462 1.4E-128 T 16-09-2016 BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 PANTHER PTHR23309:SF2 7 462 1.4E-128 T 16-09-2016 BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 10 192 1.3E-40 T 16-09-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 Gene3D G3DSA:3.40.50.720 6 195 1.1E-38 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 Gene3D G3DSA:3.90.226.10 483 620 2.9E-23 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS10105 b10945bd45b3fce8f231ba500f5b0965 790 Pfam PF00378 Enoyl-CoA hydratase/isomerase 487 622 1.0E-15 T 16-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 BER92_RS06710 9c620dc0ce7bce9365a13d27fca51f1e 475 Pfam PF03796 DnaB-like helicase C terminal domain 210 465 4.6E-119 T 16-09-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 BER92_RS06710 9c620dc0ce7bce9365a13d27fca51f1e 475 PANTHER PTHR30153 16 475 2.6E-215 T 16-09-2016 BER92_RS06710 9c620dc0ce7bce9365a13d27fca51f1e 475 Gene3D G3DSA:3.40.50.300 195 467 3.3E-109 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06710 9c620dc0ce7bce9365a13d27fca51f1e 475 Pfam PF00772 DnaB-like helicase N terminal domain 32 133 3.6E-36 T 16-09-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 BER92_RS06710 9c620dc0ce7bce9365a13d27fca51f1e 475 SUPERFAMILY SSF52540 208 279 4.91E-55 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06710 9c620dc0ce7bce9365a13d27fca51f1e 475 SUPERFAMILY SSF52540 306 458 4.91E-55 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06710 9c620dc0ce7bce9365a13d27fca51f1e 475 SUPERFAMILY SSF48024 30 142 1.05E-38 T 16-09-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 BER92_RS06710 9c620dc0ce7bce9365a13d27fca51f1e 475 Gene3D G3DSA:1.10.860.10 32 134 1.1E-37 T 16-09-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BER92_RS06710 9c620dc0ce7bce9365a13d27fca51f1e 475 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 32 467 1.9E-177 T 16-09-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 BER92_RS03840 8c7f5399e6abc73fe8e8d29091e383b3 275 SUPERFAMILY SSF51730 3 274 1.96E-89 T 16-09-2016 IPR029041 FAD-linked oxidoreductase-like BER92_RS03840 8c7f5399e6abc73fe8e8d29091e383b3 275 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 4 273 5.2E-101 T 16-09-2016 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 BER92_RS03840 8c7f5399e6abc73fe8e8d29091e383b3 275 Pfam PF02219 Methylenetetrahydrofolate reductase 3 274 2.6E-85 T 16-09-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 BER92_RS03840 8c7f5399e6abc73fe8e8d29091e383b3 275 Gene3D G3DSA:3.20.20.220 3 274 2.1E-98 T 16-09-2016 IPR029041 FAD-linked oxidoreductase-like BER92_RS03840 8c7f5399e6abc73fe8e8d29091e383b3 275 PANTHER PTHR21091 132 274 1.3E-39 T 16-09-2016 BER92_RS03840 8c7f5399e6abc73fe8e8d29091e383b3 275 PANTHER PTHR21091:SF31 132 274 1.3E-39 T 16-09-2016 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 PANTHER PTHR23151:SF65 168 212 3.2E-230 T 16-09-2016 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 PANTHER PTHR23151:SF65 1 118 3.2E-230 T 16-09-2016 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 PANTHER PTHR23151:SF65 253 484 3.2E-230 T 16-09-2016 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 PANTHER PTHR23151 1 118 3.2E-230 T 16-09-2016 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 PANTHER PTHR23151 168 212 3.2E-230 T 16-09-2016 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 PANTHER PTHR23151 253 484 3.2E-230 T 16-09-2016 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 SUPERFAMILY SSF51230 5 91 5.5E-23 T 16-09-2016 IPR011053 Single hybrid motif BER92_RS00520 0c7faf7d78743b853415629b34518270 488 SUPERFAMILY SSF47005 171 209 3.53E-9 T 16-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 Gene3D G3DSA:2.40.50.100 3 89 5.6E-21 T 16-09-2016 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 Pfam PF02817 e3 binding domain 171 205 1.7E-10 T 16-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 281 480 4.7E-45 T 16-09-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 Pfam PF00364 Biotin-requiring enzyme 6 77 2.2E-16 T 16-09-2016 IPR000089 Biotin/lipoyl attachment BER92_RS00520 0c7faf7d78743b853415629b34518270 488 SUPERFAMILY SSF52777 272 484 3.74E-52 T 16-09-2016 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 Gene3D G3DSA:4.10.320.10 170 215 5.3E-14 T 16-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 BER92_RS00520 0c7faf7d78743b853415629b34518270 488 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 29 58 - T 16-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER92_RS00520 0c7faf7d78743b853415629b34518270 488 Gene3D G3DSA:3.30.559.10 269 480 2.6E-48 T 16-09-2016 IPR023213 Chloramphenicol acetyltransferase-like domain BER92_RS11850 c1dc8e096d42853ca85cf21e9e9e9662 86 Gene3D G3DSA:3.30.70.1060 4 84 4.2E-7 T 16-09-2016 BER92_RS11850 c1dc8e096d42853ca85cf21e9e9e9662 86 PANTHER PTHR37828 1 84 3.5E-21 T 16-09-2016 BER92_RS11850 c1dc8e096d42853ca85cf21e9e9e9662 86 SUPERFAMILY SSF54909 3 84 1.47E-12 T 16-09-2016 IPR011008 Dimeric alpha-beta barrel BER92_RS11850 c1dc8e096d42853ca85cf21e9e9e9662 86 Pfam PF03795 YCII-related domain 4 84 1.0E-7 T 16-09-2016 IPR005545 YCII-related BER92_RS11850 c1dc8e096d42853ca85cf21e9e9e9662 86 PANTHER PTHR37828:SF1 1 84 3.5E-21 T 16-09-2016 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 SMART SM00938 4 105 5.1E-62 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.8E-41 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 16-09-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 16-09-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 SUPERFAMILY SSF54913 1 112 1.02E-43 T 16-09-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 PRINTS PR00340 P-II protein signature 23 41 4.6E-41 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 PRINTS PR00340 P-II protein signature 83 103 4.6E-41 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 PRINTS PR00340 P-II protein signature 52 75 4.6E-41 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 PRINTS PR00340 P-II protein signature 2 17 4.6E-41 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 PANTHER PTHR30115:SF15 1 112 1.8E-67 T 16-09-2016 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 PIRSF PIRSF039144 1 112 3.6E-52 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 Gene3D G3DSA:3.30.70.120 1 112 1.3E-47 T 16-09-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER92_RS01590 3d873988bdb8781f813cc3949b5fd368 112 PANTHER PTHR30115 1 112 1.8E-67 T 16-09-2016 BER92_RS00540 da7c4ba1e58686ccb261252697e424a6 310 SUPERFAMILY SSF140959 23 281 4.45E-96 T 16-09-2016 BER92_RS00540 da7c4ba1e58686ccb261252697e424a6 310 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 17 282 38.822 T 16-09-2016 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|UniPathway: UPA00333 BER92_RS00540 da7c4ba1e58686ccb261252697e424a6 310 Pfam PF03301 Tryptophan 2,3-dioxygenase 208 281 5.0E-21 T 16-09-2016 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|UniPathway: UPA00333 BER92_RS00540 da7c4ba1e58686ccb261252697e424a6 310 Pfam PF03301 Tryptophan 2,3-dioxygenase 18 144 2.3E-41 T 16-09-2016 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|UniPathway: UPA00333 BER92_RS00540 da7c4ba1e58686ccb261252697e424a6 310 PANTHER PTHR10138:SF0 1 280 8.0E-101 T 16-09-2016 BER92_RS00540 da7c4ba1e58686ccb261252697e424a6 310 PANTHER PTHR10138 1 280 8.0E-101 T 16-09-2016 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|UniPathway: UPA00333 BER92_RS15735 ac564931d07834fc0a68c80d752ef256 329 Gene3D G3DSA:3.90.850.10 68 307 6.2E-38 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS15735 ac564931d07834fc0a68c80d752ef256 329 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 82 323 3.2E-37 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS15735 ac564931d07834fc0a68c80d752ef256 329 PANTHER PTHR11820:SF85 8 326 2.1E-154 T 16-09-2016 BER92_RS15735 ac564931d07834fc0a68c80d752ef256 329 PANTHER PTHR11820 8 326 2.1E-154 T 16-09-2016 BER92_RS15735 ac564931d07834fc0a68c80d752ef256 329 SUPERFAMILY SSF56529 77 323 3.79E-54 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 54 72 1.6E-9 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 1.6E-9 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 186 199 1.6E-9 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 74 86 1.6E-9 T 16-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 287 392 3.5E-10 T 16-09-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 SUPERFAMILY SSF51419 31 283 1.03E-63 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 PANTHER PTHR11482:SF5 4 394 1.8E-61 T 16-09-2016 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 Gene3D G3DSA:3.20.20.10 34 270 3.6E-60 T 16-09-2016 IPR029066 PLP-binding barrel BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 PANTHER PTHR11482 4 394 1.8E-61 T 16-09-2016 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 SUPERFAMILY SSF50621 249 392 5.86E-38 T 16-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 39 280 3.4E-28 T 16-09-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 225 238 - T 16-09-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 BER92_RS15145 24c1c5da223c88725e4b0a8719c7c6b2 395 Gene3D G3DSA:2.40.37.10 271 394 2.6E-28 T 16-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 BER92_RS14870 ef8fff53db70f35d9ef9b31a964645da 134 Gene3D G3DSA:3.10.129.10 8 132 1.6E-38 T 16-09-2016 IPR029069 HotDog domain BER92_RS14870 ef8fff53db70f35d9ef9b31a964645da 134 SUPERFAMILY SSF54637 9 132 1.92E-34 T 16-09-2016 IPR029069 HotDog domain BER92_RS14870 ef8fff53db70f35d9ef9b31a964645da 134 Pfam PF13279 Thioesterase-like superfamily 14 130 1.5E-21 T 16-09-2016 BER92_RS14870 ef8fff53db70f35d9ef9b31a964645da 134 PANTHER PTHR31793 9 132 1.4E-33 T 16-09-2016 BER92_RS11345 9ea8c151d08ca9ee4cff5c2ff24a5702 1245 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 42 1177 1.1E-204 T 16-09-2016 IPR017731 Type VI secretion system, IcmF BER92_RS11345 9ea8c151d08ca9ee4cff5c2ff24a5702 1245 Pfam PF06761 Intracellular multiplication and human macrophage-killing 493 832 6.6E-78 T 16-09-2016 IPR009612 ImcF-related BER92_RS11345 9ea8c151d08ca9ee4cff5c2ff24a5702 1245 SUPERFAMILY SSF52540 123 269 6.08E-8 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11345 9ea8c151d08ca9ee4cff5c2ff24a5702 1245 Pfam PF06744 Type VI secretion protein IcmF C-terminal 965 1160 7.7E-42 T 16-09-2016 IPR010623 Type VI secretion system IcmF, C-terminal BER92_RS11345 9ea8c151d08ca9ee4cff5c2ff24a5702 1245 PANTHER PTHR36153 582 1217 1.3E-131 T 16-09-2016 BER92_RS11345 9ea8c151d08ca9ee4cff5c2ff24a5702 1245 PANTHER PTHR36153 8 556 1.3E-131 T 16-09-2016 BER92_RS11345 9ea8c151d08ca9ee4cff5c2ff24a5702 1245 Pfam PF14331 ImcF-related N-terminal domain 189 439 3.5E-82 T 16-09-2016 IPR025743 ImcF-related, N-terminal domain BER92_RS09910 80ea2476711f342b7ab9cffc9e7243fc 554 PANTHER PTHR32305:SF7 62 502 1.1E-14 T 16-09-2016 BER92_RS09910 80ea2476711f342b7ab9cffc9e7243fc 554 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 135 238 8.5E-30 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS09910 80ea2476711f342b7ab9cffc9e7243fc 554 PANTHER PTHR32305 62 502 1.1E-14 T 16-09-2016 BER92_RS09910 80ea2476711f342b7ab9cffc9e7243fc 554 Gene3D G3DSA:2.40.50.230 4 104 8.3E-28 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS09910 80ea2476711f342b7ab9cffc9e7243fc 554 SUPERFAMILY SSF69255 1 104 1.99E-20 T 16-09-2016 BER92_RS09910 80ea2476711f342b7ab9cffc9e7243fc 554 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 288 436 3.0E-44 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS09910 80ea2476711f342b7ab9cffc9e7243fc 554 SUPERFAMILY SSF69349 94 157 2.2E-5 T 16-09-2016 BER92_RS14270 fc904737be1caa76cb825784a579bfb4 192 PANTHER PTHR11908:SF66 25 166 2.1E-34 T 16-09-2016 BER92_RS14270 fc904737be1caa76cb825784a579bfb4 192 PANTHER PTHR11908 25 166 2.1E-34 T 16-09-2016 BER92_RS14270 fc904737be1caa76cb825784a579bfb4 192 Gene3D G3DSA:3.10.20.30 24 96 9.3E-31 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS14270 fc904737be1caa76cb825784a579bfb4 192 Gene3D G3DSA:1.10.150.120 97 177 1.9E-32 T 16-09-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 BER92_RS14270 fc904737be1caa76cb825784a579bfb4 192 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 28 76 8.5E-6 T 16-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BER92_RS14270 fc904737be1caa76cb825784a579bfb4 192 SUPERFAMILY SSF47741 106 175 3.93E-29 T 16-09-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 BER92_RS14270 fc904737be1caa76cb825784a579bfb4 192 Pfam PF01799 [2Fe-2S] binding domain 95 167 6.4E-30 T 16-09-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 BER92_RS14270 fc904737be1caa76cb825784a579bfb4 192 SUPERFAMILY SSF54292 23 109 1.57E-26 T 16-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BER92_RS14270 fc904737be1caa76cb825784a579bfb4 192 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 61 69 - T 16-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 BER92_RS03200 fcc5eff6002ba996f78fbf66467ad48f 91 Gene3D G3DSA:1.10.10.60 14 89 2.9E-18 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03200 fcc5eff6002ba996f78fbf66467ad48f 91 SUPERFAMILY SSF46689 8 89 9.85E-19 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03200 fcc5eff6002ba996f78fbf66467ad48f 91 PANTHER PTHR33215 7 88 6.9E-21 T 16-09-2016 BER92_RS03200 fcc5eff6002ba996f78fbf66467ad48f 91 Pfam PF01527 Transposase 11 77 3.3E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS03200 fcc5eff6002ba996f78fbf66467ad48f 91 PANTHER PTHR33215:SF1 7 88 6.9E-21 T 16-09-2016 BER92_RS12800 fce89639cf07e24aa4d74132827cdbd2 137 Pfam PF02410 Ribosomal silencing factor during starvation 26 120 9.6E-29 T 16-09-2016 BER92_RS12800 fce89639cf07e24aa4d74132827cdbd2 137 SUPERFAMILY SSF81301 21 126 2.94E-38 T 16-09-2016 BER92_RS12800 fce89639cf07e24aa4d74132827cdbd2 137 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 24 120 8.5E-37 T 16-09-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BER92_RS12800 fce89639cf07e24aa4d74132827cdbd2 137 PANTHER PTHR21043 21 125 4.6E-43 T 16-09-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BER92_RS12800 fce89639cf07e24aa4d74132827cdbd2 137 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 19 121 24.685 T 16-09-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BER92_RS12800 fce89639cf07e24aa4d74132827cdbd2 137 Gene3D G3DSA:3.30.460.10 22 121 4.9E-37 T 16-09-2016 BER92_RS03770 67fd6260b3770c4d3976a2a45edfae1f 454 PANTHER PTHR30474 1 390 3.7E-166 T 16-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 BER92_RS03770 67fd6260b3770c4d3976a2a45edfae1f 454 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 17 381 38.02 T 16-09-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 BER92_RS03770 67fd6260b3770c4d3976a2a45edfae1f 454 Pfam PF01098 Cell cycle protein 25 372 2.2E-97 T 16-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 BER92_RS03770 67fd6260b3770c4d3976a2a45edfae1f 454 PANTHER PTHR30474:SF2 1 390 3.7E-166 T 16-09-2016 BER92_RS03770 67fd6260b3770c4d3976a2a45edfae1f 454 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 19 372 4.8E-123 T 16-09-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 SUPERFAMILY SSF69279 23 198 8.5E-54 T 16-09-2016 BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 SUPERFAMILY SSF69279 208 382 7.48E-21 T 16-09-2016 BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 Pfam PF05954 Phage late control gene D protein (GPD) 42 349 7.1E-84 T 16-09-2016 BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 34 518 9.5E-117 T 16-09-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 SUPERFAMILY SSF69349 638 746 5.41E-7 T 16-09-2016 BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 Gene3D G3DSA:3.55.50.10 109 201 7.2E-32 T 16-09-2016 BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 PANTHER PTHR32305 14 623 1.2E-112 T 16-09-2016 BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 PANTHER PTHR32305:SF7 14 623 1.2E-112 T 16-09-2016 BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 22 535 4.0E-169 T 16-09-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 Gene3D G3DSA:2.40.50.230 389 471 2.3E-38 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 SUPERFAMILY SSF69255 385 471 4.45E-32 T 16-09-2016 BER92_RS11420 5f5e5d6e49a561e63239853cf7b21d91 747 SUPERFAMILY SSF69349 461 632 1.1E-30 T 16-09-2016 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 PANTHER PTHR30161:SF2 5 640 0.0 T 16-09-2016 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 PANTHER PTHR30161 5 640 0.0 T 16-09-2016 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 Pfam PF00771 FHIPEP family 22 426 2.2E-152 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 Pfam PF00771 FHIPEP family 429 630 2.7E-46 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 177 194 9.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 128 144 9.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 66 85 9.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 147 165 9.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 29 42 9.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 228 242 9.7E-50 T 16-09-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BER92_RS12915 4edcdb6b0b962e26ff82714e2682c64c 640 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 133 156 - T 16-09-2016 IPR025505 FHIPEP conserved site BER92_RS13850 97bda3f7380806804fc678f6712717aa 287 PANTHER PTHR10264:SF80 6 285 2.9E-83 T 16-09-2016 BER92_RS13850 97bda3f7380806804fc678f6712717aa 287 SUPERFAMILY SSF117892 51 190 9.94E-20 T 16-09-2016 IPR001107 Band 7 domain BER92_RS13850 97bda3f7380806804fc678f6712717aa 287 PIRSF PIRSF005651 1 287 1.5E-80 T 16-09-2016 IPR010200 HflC GO:0016021|GO:0052547 BER92_RS13850 97bda3f7380806804fc678f6712717aa 287 SMART SM00244 19 184 5.1E-16 T 16-09-2016 IPR001107 Band 7 domain BER92_RS13850 97bda3f7380806804fc678f6712717aa 287 PANTHER PTHR10264 6 285 2.9E-83 T 16-09-2016 IPR001972 Stomatin family GO:0016020 BER92_RS13850 97bda3f7380806804fc678f6712717aa 287 Pfam PF01145 SPFH domain / Band 7 family 23 201 6.1E-24 T 16-09-2016 IPR001107 Band 7 domain BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 394 428 9.6E-9 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 SUPERFAMILY SSF53448 5 251 3.47E-56 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 SUPERFAMILY SSF51161 255 442 1.09E-47 T 16-09-2016 IPR011004 Trimeric LpxA-like BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 Gene3D G3DSA:2.160.10.10 334 451 1.3E-33 T 16-09-2016 BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 317 348 6.1E-4 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 264 298 1.3E-6 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 Gene3D G3DSA:2.160.10.10 243 333 5.8E-14 T 16-09-2016 BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 PANTHER PTHR22572:SF115 6 448 1.4E-207 T 16-09-2016 BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 Gene3D G3DSA:3.90.550.10 4 242 1.1E-63 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 PANTHER PTHR22572 6 448 1.4E-207 T 16-09-2016 BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 267 295 - T 16-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 453 2.2E-184 T 16-09-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 4 451 40.141 T 16-09-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 BER92_RS15875 6942eb77f490c0cf6a3c52554113ed27 454 Pfam PF12804 MobA-like NTP transferase domain 7 129 1.3E-21 T 16-09-2016 IPR025877 MobA-like NTP transferase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070 356 521 5.3E-292 T 16-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Pfam PF00580 UvrD/REP helicase N-terminal domain 15 493 1.9E-49 T 16-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070:SF23 11 81 5.3E-292 T 16-09-2016 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070:SF23 875 1250 5.3E-292 T 16-09-2016 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 SUPERFAMILY SSF52980 958 1256 1.45E-56 T 16-09-2016 IPR011335 Restriction endonuclease type II-like BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Gene3D G3DSA:3.90.320.10 948 1259 1.5E-83 T 16-09-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Pfam PF13361 UvrD-like helicase C-terminal domain 621 690 5.8E-7 T 16-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Pfam PF13361 UvrD-like helicase C-terminal domain 741 897 2.0E-14 T 16-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 SUPERFAMILY SSF52540 574 833 2.59E-94 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 SUPERFAMILY SSF52540 876 898 2.59E-94 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 SUPERFAMILY SSF52540 378 530 2.59E-94 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 SUPERFAMILY SSF52540 14 72 2.59E-94 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 SUPERFAMILY SSF52540 159 225 2.59E-94 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 11 1254 1.1E-210 T 16-09-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070 875 1250 5.3E-292 T 16-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070 11 81 5.3E-292 T 16-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070 546 848 5.3E-292 T 16-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Gene3D G3DSA:3.40.50.300 161 190 2.8E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Gene3D G3DSA:3.40.50.300 403 509 2.8E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Gene3D G3DSA:3.40.50.300 14 74 2.8E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Gene3D G3DSA:1.10.3170.10 198 401 1.2E-20 T 16-09-2016 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070:SF23 546 848 5.3E-292 T 16-09-2016 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070:SF23 356 521 5.3E-292 T 16-09-2016 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 4 1255 12.663 T 16-09-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070 159 256 5.3E-292 T 16-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Gene3D G3DSA:3.40.50.300 801 916 6.6E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Gene3D G3DSA:3.40.50.300 510 655 6.6E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Gene3D G3DSA:1.10.486.10 658 800 1.1E-38 T 16-09-2016 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1012 1195 4.4E-6 T 16-09-2016 BER92_RS19190 7430005c47ac07c8e0a0d2b86561fa58 1289 PANTHER PTHR11070:SF23 159 256 5.3E-292 T 16-09-2016 BER92_RS07195 a4e785a9d2937cc1700436fd38fc1f95 312 SUPERFAMILY SSF51197 3 308 1.44E-84 T 16-09-2016 BER92_RS07195 a4e785a9d2937cc1700436fd38fc1f95 312 Gene3D G3DSA:2.60.120.330 2 308 5.1E-89 T 16-09-2016 IPR027443 Isopenicillin N synthase-like BER92_RS07195 a4e785a9d2937cc1700436fd38fc1f95 312 PRINTS PR00682 Isopenicillin N synthase signature 191 212 1.7E-8 T 16-09-2016 IPR002283 Isopenicillin N synthase GO:0005506|GO:0016491|GO:0055114 BER92_RS07195 a4e785a9d2937cc1700436fd38fc1f95 312 PRINTS PR00682 Isopenicillin N synthase signature 227 253 1.7E-8 T 16-09-2016 IPR002283 Isopenicillin N synthase GO:0005506|GO:0016491|GO:0055114 BER92_RS07195 a4e785a9d2937cc1700436fd38fc1f95 312 PRINTS PR00682 Isopenicillin N synthase signature 24 41 1.7E-8 T 16-09-2016 IPR002283 Isopenicillin N synthase GO:0005506|GO:0016491|GO:0055114 BER92_RS07195 a4e785a9d2937cc1700436fd38fc1f95 312 PANTHER PTHR10209:SF146 4 309 6.4E-110 T 16-09-2016 BER92_RS07195 a4e785a9d2937cc1700436fd38fc1f95 312 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 173 271 4.7E-16 T 16-09-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 BER92_RS07195 a4e785a9d2937cc1700436fd38fc1f95 312 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 5 121 1.3E-30 T 16-09-2016 IPR026992 Non-haem dioxygenase N-terminal domain BER92_RS07195 a4e785a9d2937cc1700436fd38fc1f95 312 PANTHER PTHR10209 4 309 6.4E-110 T 16-09-2016 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 Gene3D G3DSA:3.40.50.300 94 297 9.3E-76 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 SMART SM00962 100 296 4.9E-115 T 16-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 SUPERFAMILY SSF52540 42 353 8.82E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 SMART SM00963 1 86 4.1E-35 T 16-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 Pfam PF00448 SRP54-type protein, GTPase domain 101 295 1.1E-73 T 16-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 PANTHER PTHR11564:SF7 1 435 7.0E-259 T 16-09-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 428 3.6E-175 T 16-09-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.1E-20 T 16-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 SMART SM00382 99 301 5.3E-11 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 PANTHER PTHR11564 1 435 7.0E-259 T 16-09-2016 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 Gene3D G3DSA:1.10.260.30 328 431 1.3E-38 T 16-09-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 33.747 T 16-09-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 16-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 SUPERFAMILY SSF47446 328 430 4.91E-36 T 16-09-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 Gene3D G3DSA:1.20.120.140 2 88 1.1E-32 T 16-09-2016 BER92_RS05905 e9a1a443abf150a169281eae6d7e57d9 458 Pfam PF02978 Signal peptide binding domain 328 427 6.7E-32 T 16-09-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 SUPERFAMILY SSF49303 239 347 4.32E-18 T 16-09-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 PANTHER PTHR10066:SF12 202 865 1.2E-264 T 16-09-2016 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 SUPERFAMILY SSF49303 805 883 1.22E-17 T 16-09-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 Pfam PF00703 Glycosyl hydrolases family 2 239 348 2.1E-7 T 16-09-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 SUPERFAMILY SSF49785 34 237 8.65E-53 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 PANTHER PTHR10066:SF12 15 173 1.2E-264 T 16-09-2016 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 PANTHER PTHR10066 202 865 1.2E-264 T 16-09-2016 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 PANTHER PTHR10066 15 173 1.2E-264 T 16-09-2016 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 SUPERFAMILY SSF49303 711 803 7.62E-12 T 16-09-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 Gene3D G3DSA:3.20.20.80 348 598 7.7E-67 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 Gene3D G3DSA:3.20.20.80 638 705 7.7E-67 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 Gene3D G3DSA:2.60.120.260 22 171 4.7E-31 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 Gene3D G3DSA:2.60.120.260 208 223 4.7E-31 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 Gene3D G3DSA:2.60.40.320 224 347 1.3E-14 T 16-09-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 BER92_RS13770 b1ae89ac3120001da03b55f22de29aca 898 SUPERFAMILY SSF51445 346 702 2.93E-105 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS18390 0ba4e965b68e9aa735034b908fc413a3 240 PANTHER PTHR10859 2 237 1.6E-77 T 16-09-2016 BER92_RS18390 0ba4e965b68e9aa735034b908fc413a3 240 Pfam PF00535 Glycosyl transferase family 2 7 168 4.5E-23 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS18390 0ba4e965b68e9aa735034b908fc413a3 240 SUPERFAMILY SSF53448 1 228 3.21E-38 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS18390 0ba4e965b68e9aa735034b908fc413a3 240 Gene3D G3DSA:3.90.550.10 4 208 2.9E-22 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS18390 0ba4e965b68e9aa735034b908fc413a3 240 PANTHER PTHR10859:SF49 2 237 1.6E-77 T 16-09-2016 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 Gene3D G3DSA:3.40.50.300 198 336 1.1E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 6 599 9.0E-265 T 16-09-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 456 6.9E-154 T 16-09-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 Gene3D G3DSA:3.40.50.300 5 193 6.1E-55 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 Gene3D G3DSA:1.10.10.10 337 508 1.8E-62 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 SUPERFAMILY SSF52540 200 451 2.26E-62 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 SUPERFAMILY SSF47819 525 598 1.48E-21 T 16-09-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 SUPERFAMILY SSF52540 4 189 9.41E-43 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 Pfam PF00271 Helicase conserved C-terminal domain 219 323 1.7E-13 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 Pfam PF00570 HRDC domain 530 596 3.2E-21 T 16-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 Pfam PF16124 RecQ zinc-binding 335 397 1.1E-18 T 16-09-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 Pfam PF09382 RQC domain 401 507 5.3E-42 T 16-09-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 PANTHER PTHR13710 5 598 7.2E-286 T 16-09-2016 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 PANTHER PTHR13710:SF81 5 598 7.2E-286 T 16-09-2016 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 SMART SM00956 404 507 4.5E-57 T 16-09-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 SMART SM00490 242 323 2.2E-23 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 Gene3D G3DSA:1.10.150.80 528 597 1.5E-17 T 16-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 Pfam PF00270 DEAD/DEAH box helicase 22 177 1.2E-16 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 SMART SM00341 526 599 1.8E-10 T 16-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 BER92_RS04085 86f84022747543146cb7e949b6e0c402 600 SMART SM00487 14 210 1.0E-24 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624 558 775 0.0 T 16-09-2016 IPR033247 Transketolase family BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 SUPERFAMILY SSF52518 480 704 2.16E-89 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624:SF67 485 540 0.0 T 16-09-2016 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624:SF67 794 877 0.0 T 16-09-2016 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624 365 454 0.0 T 16-09-2016 IPR033247 Transketolase family BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 Gene3D G3DSA:3.40.50.970 59 473 5.9E-147 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 SUPERFAMILY SSF52518 60 472 6.41E-133 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624 77 296 0.0 T 16-09-2016 IPR033247 Transketolase family BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624:SF67 558 775 0.0 T 16-09-2016 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624:SF67 365 454 0.0 T 16-09-2016 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624:SF67 77 296 0.0 T 16-09-2016 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 9 893 0.0 T 16-09-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 Gene3D G3DSA:3.40.50.920 711 893 4.0E-75 T 16-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PIRSF PIRSF000156 1 895 0.0 T 16-09-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624 485 540 0.0 T 16-09-2016 IPR033247 Transketolase family BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 PANTHER PTHR11624 794 877 0.0 T 16-09-2016 IPR033247 Transketolase family BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 122 294 1.2E-7 T 16-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 SUPERFAMILY SSF52922 706 893 6.71E-59 T 16-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 BER92_RS17345 a90b1e93537ac3193b76d992eceef7e8 895 Gene3D G3DSA:3.40.50.970 478 709 2.8E-107 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS07150 0ff15a75af5cdafa0b61734ca86c5270 222 Gene3D G3DSA:3.20.20.70 8 215 4.4E-60 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS07150 0ff15a75af5cdafa0b61734ca86c5270 222 PANTHER PTHR22854 7 215 2.0E-61 T 16-09-2016 BER92_RS07150 0ff15a75af5cdafa0b61734ca86c5270 222 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 8 216 38.599 T 16-09-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 BER92_RS07150 0ff15a75af5cdafa0b61734ca86c5270 222 SUPERFAMILY SSF51366 8 213 6.91E-51 T 16-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 BER92_RS07150 0ff15a75af5cdafa0b61734ca86c5270 222 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 11 211 2.1E-39 T 16-09-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 BER92_RS07150 0ff15a75af5cdafa0b61734ca86c5270 222 PANTHER PTHR22854:SF6 7 215 2.0E-61 T 16-09-2016 BER92_RS10830 b81b181c5cca95bbaeb145c14e516da6 288 SUPERFAMILY SSF52374 3 280 3.75E-99 T 16-09-2016 BER92_RS10830 b81b181c5cca95bbaeb145c14e516da6 288 PANTHER PTHR21299 1 279 2.9E-122 T 16-09-2016 BER92_RS10830 b81b181c5cca95bbaeb145c14e516da6 288 Hamap MF_00158 Pantothenate synthetase [panC]. 3 280 37.855 T 16-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 BER92_RS10830 b81b181c5cca95bbaeb145c14e516da6 288 PANTHER PTHR21299:SF1 1 279 2.9E-122 T 16-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 BER92_RS10830 b81b181c5cca95bbaeb145c14e516da6 288 Gene3D G3DSA:3.30.1300.10 178 280 1.8E-27 T 16-09-2016 BER92_RS10830 b81b181c5cca95bbaeb145c14e516da6 288 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 3 278 9.8E-88 T 16-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 BER92_RS10830 b81b181c5cca95bbaeb145c14e516da6 288 Gene3D G3DSA:3.40.50.620 2 175 2.2E-69 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS10830 b81b181c5cca95bbaeb145c14e516da6 288 Pfam PF02569 Pantoate-beta-alanine ligase 5 278 1.9E-93 T 16-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 BER92_RS18645 6c92584db10140b0c2508ee37cba1c58 325 PIRSF PIRSF005211 1 325 3.0E-70 T 16-09-2016 IPR012020 AB hydrolase 4 family KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- BER92_RS18645 6c92584db10140b0c2508ee37cba1c58 325 SUPERFAMILY SSF53474 40 184 7.43E-35 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18645 6c92584db10140b0c2508ee37cba1c58 325 SUPERFAMILY SSF53474 259 321 7.43E-35 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18645 6c92584db10140b0c2508ee37cba1c58 325 Pfam PF12697 Alpha/beta hydrolase family 72 317 4.6E-12 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS18645 6c92584db10140b0c2508ee37cba1c58 325 PANTHER PTHR10794 1 320 2.2E-183 T 16-09-2016 BER92_RS18645 6c92584db10140b0c2508ee37cba1c58 325 PANTHER PTHR10794:SF49 1 320 2.2E-183 T 16-09-2016 BER92_RS18645 6c92584db10140b0c2508ee37cba1c58 325 Gene3D G3DSA:3.40.50.1820 51 311 1.1E-28 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS08965 ed599d0e028109d2839e00968539180c 1045 Gene3D G3DSA:2.60.120.260 17 169 3.7E-7 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS08965 ed599d0e028109d2839e00968539180c 1045 SUPERFAMILY SSF49785 16 170 2.72E-20 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS08965 ed599d0e028109d2839e00968539180c 1045 SUPERFAMILY SSF48208 549 977 9.07E-46 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS08965 ed599d0e028109d2839e00968539180c 1045 Pfam PF00754 F5/8 type C domain 192 290 6.9E-15 T 16-09-2016 IPR000421 Coagulation factor 5/8 C-terminal domain BER92_RS08965 ed599d0e028109d2839e00968539180c 1045 Gene3D G3DSA:1.50.10.10 609 706 5.0E-9 T 16-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 BER92_RS08965 ed599d0e028109d2839e00968539180c 1045 SUPERFAMILY SSF49785 193 294 2.27E-14 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS08965 ed599d0e028109d2839e00968539180c 1045 Gene3D G3DSA:2.60.120.260 194 295 2.5E-18 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS13905 8c0985b484a2a34d0782e0642218048c 46 Gene3D G3DSA:3.30.420.10 3 30 8.2E-4 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS13905 8c0985b484a2a34d0782e0642218048c 46 Pfam PF13683 Integrase core domain 2 29 2.4E-8 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS13905 8c0985b484a2a34d0782e0642218048c 46 PANTHER PTHR24559:SF185 1 43 2.7E-13 T 16-09-2016 BER92_RS13905 8c0985b484a2a34d0782e0642218048c 46 PANTHER PTHR24559 1 43 2.7E-13 T 16-09-2016 BER92_RS15820 e4f8d6e0c4ae4210da33d6106ad0653d 367 PANTHER PTHR10314 1 342 4.7E-192 T 16-09-2016 BER92_RS15820 e4f8d6e0c4ae4210da33d6106ad0653d 367 PANTHER PTHR10314:SF126 1 342 4.7E-192 T 16-09-2016 BER92_RS15820 e4f8d6e0c4ae4210da33d6106ad0653d 367 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 34 320 9.3E-46 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS15820 e4f8d6e0c4ae4210da33d6106ad0653d 367 Gene3D G3DSA:3.40.50.1100 47 142 4.8E-23 T 16-09-2016 BER92_RS15820 e4f8d6e0c4ae4210da33d6106ad0653d 367 Gene3D G3DSA:3.40.50.1100 143 339 1.5E-34 T 16-09-2016 BER92_RS15820 e4f8d6e0c4ae4210da33d6106ad0653d 367 SUPERFAMILY SSF53686 5 337 1.01E-65 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS11810 11b5b533e09b20b4f8b0da0fdb5e3305 121 PANTHER PTHR33803:SF1 5 121 1.8E-80 T 16-09-2016 BER92_RS11810 11b5b533e09b20b4f8b0da0fdb5e3305 121 PANTHER PTHR33803 5 121 1.8E-80 T 16-09-2016 BER92_RS11810 11b5b533e09b20b4f8b0da0fdb5e3305 121 Pfam PF13751 Transposase DDE domain 45 89 5.4E-6 T 16-09-2016 IPR025668 Transposase DDE domain BER92_RS12815 399d3117ca813b5890cdacb347bd40f8 216 PANTHER PTHR38098 2 210 6.8E-64 T 16-09-2016 BER92_RS12815 399d3117ca813b5890cdacb347bd40f8 216 Pfam PF04390 Lipopolysaccharide-assembly 12 162 3.9E-13 T 16-09-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 BER92_RS12815 399d3117ca813b5890cdacb347bd40f8 216 Gene3D G3DSA:3.30.160.150 21 173 5.9E-40 T 16-09-2016 BER92_RS12815 399d3117ca813b5890cdacb347bd40f8 216 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 6 167 23.508 T 16-09-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 BER92_RS12815 399d3117ca813b5890cdacb347bd40f8 216 PANTHER PTHR38098:SF1 2 210 6.8E-64 T 16-09-2016 BER92_RS10055 ab44682b343b278fe9df630c141c2d89 380 SMART SM00450 6 102 1.1E-11 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS10055 ab44682b343b278fe9df630c141c2d89 380 SUPERFAMILY SSF69572 116 362 9.94E-94 T 16-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BER92_RS10055 ab44682b343b278fe9df630c141c2d89 380 SUPERFAMILY SSF52821 4 105 9.56E-23 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS10055 ab44682b343b278fe9df630c141c2d89 380 PANTHER PTHR10953 108 359 5.8E-101 T 16-09-2016 BER92_RS10055 ab44682b343b278fe9df630c141c2d89 380 Pfam PF00581 Rhodanese-like domain 14 98 9.0E-8 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS10055 ab44682b343b278fe9df630c141c2d89 380 Gene3D G3DSA:3.40.250.10 3 105 4.5E-22 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS10055 ab44682b343b278fe9df630c141c2d89 380 Pfam PF00899 ThiF family 119 357 2.2E-70 T 16-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BER92_RS10055 ab44682b343b278fe9df630c141c2d89 380 Gene3D G3DSA:3.40.50.720 115 360 1.1E-76 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 Pfam PF00990 Diguanylate cyclase, GGDEF domain 175 307 1.4E-11 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 PANTHER PTHR33121 204 618 1.5E-97 T 16-09-2016 BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 Gene3D G3DSA:3.20.20.450 349 596 6.6E-91 T 16-09-2016 IPR001633 EAL domain BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 PANTHER PTHR33121:SF13 204 618 1.5E-97 T 16-09-2016 BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 SUPERFAMILY SSF55781 36 172 2.35E-25 T 16-09-2016 IPR029016 GAF domain-like BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 Pfam PF00563 EAL domain 350 584 6.6E-73 T 16-09-2016 IPR001633 EAL domain BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 Gene3D G3DSA:3.30.70.270 175 314 1.0E-13 T 16-09-2016 BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 SMART SM00052 343 589 8.6E-108 T 16-09-2016 IPR001633 EAL domain BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 Gene3D G3DSA:3.30.450.40 32 171 1.9E-12 T 16-09-2016 IPR029016 GAF domain-like BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 SUPERFAMILY SSF141868 358 598 1.57E-83 T 16-09-2016 IPR001633 EAL domain BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 SUPERFAMILY SSF55073 180 313 2.82E-10 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 Pfam PF01590 GAF domain 36 158 3.9E-9 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 SMART SM00267 163 333 4.6E-5 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10730 cd60a9351767b7c07ffa73102563feb8 618 SMART SM00065 34 177 8.6E-7 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 SUPERFAMILY SSF47384 299 382 7.85E-11 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 Pfam PF00072 Response regulator receiver domain 574 679 1.1E-16 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 SMART SM00388 316 384 3.9E-6 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 SMART SM00091 156 222 1.8E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 154 273 3.8E-10 T 16-09-2016 IPR000014 PAS domain BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 SUPERFAMILY SSF55785 143 267 3.07E-23 T 16-09-2016 IPR000014 PAS domain BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 Gene3D G3DSA:1.10.287.130 309 380 1.7E-5 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PANTHER PTHR24423:SF541 473 690 9.7E-274 T 16-09-2016 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 Gene3D G3DSA:3.40.50.2300 570 689 7.7E-29 T 16-09-2016 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PANTHER PTHR24423 473 690 9.7E-274 T 16-09-2016 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PANTHER PTHR24423 154 267 9.7E-274 T 16-09-2016 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 Gene3D G3DSA:3.30.450.20 148 267 6.7E-22 T 16-09-2016 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 SUPERFAMILY SSF52172 571 689 3.27E-26 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 SUPERFAMILY SSF55874 375 548 2.75E-38 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 SMART SM00086 227 269 0.0069 T 16-09-2016 IPR001610 PAC motif BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 528 9.7E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 507 9.7E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 547 9.7E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 493 9.7E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 SMART SM00448 572 684 3.6E-20 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 426 548 4.1E-17 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 Pfam PF00512 His Kinase A (phospho-acceptor) domain 317 383 9.9E-8 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PANTHER PTHR24423 300 456 9.7E-274 T 16-09-2016 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PANTHER PTHR24423:SF541 300 456 9.7E-274 T 16-09-2016 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 PANTHER PTHR24423:SF541 154 267 9.7E-274 T 16-09-2016 BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 Gene3D G3DSA:3.30.565.10 383 547 1.3E-36 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 SMART SM00387 425 550 5.6E-27 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS08610 43bd42d6f5d31df7f1fc64a856a89d26 692 Pfam PF08448 PAS fold 163 270 7.5E-20 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS03130 d6c3fd4fa55a0e6c1dbf7cd80a3379e4 363 PANTHER PTHR32120 1 357 3.4E-166 T 16-09-2016 BER92_RS03130 d6c3fd4fa55a0e6c1dbf7cd80a3379e4 363 Gene3D G3DSA:3.40.50.300 114 268 5.6E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03130 d6c3fd4fa55a0e6c1dbf7cd80a3379e4 363 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 38 334 30.911 T 16-09-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 BER92_RS03130 d6c3fd4fa55a0e6c1dbf7cd80a3379e4 363 Pfam PF03193 Protein of unknown function, DUF258 96 269 1.3E-46 T 16-09-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 BER92_RS03130 d6c3fd4fa55a0e6c1dbf7cd80a3379e4 363 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 85 326 6.5E-43 T 16-09-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 BER92_RS03130 d6c3fd4fa55a0e6c1dbf7cd80a3379e4 363 SUPERFAMILY SSF52540 113 326 1.09E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03130 d6c3fd4fa55a0e6c1dbf7cd80a3379e4 363 Gene3D G3DSA:1.10.40.50 278 337 2.2E-19 T 16-09-2016 BER92_RS03130 d6c3fd4fa55a0e6c1dbf7cd80a3379e4 363 PANTHER PTHR32120:SF8 1 357 3.4E-166 T 16-09-2016 BER92_RS03640 93c4590134013447b2bbb0d3d83da33c 251 PANTHER PTHR40278 1 206 7.8E-60 T 16-09-2016 BER92_RS03640 93c4590134013447b2bbb0d3d83da33c 251 PANTHER PTHR40278:SF1 1 206 7.8E-60 T 16-09-2016 BER92_RS03640 93c4590134013447b2bbb0d3d83da33c 251 Pfam PF05137 Fimbrial assembly protein (PilN) 100 189 3.4E-28 T 16-09-2016 IPR007813 Fimbrial assembly PilN BER92_RS00630 613af0022035943196296daf7708c52e 248 SMART SM00382 30 212 8.1E-13 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS00630 613af0022035943196296daf7708c52e 248 PANTHER PTHR24220 3 244 1.9E-117 T 16-09-2016 BER92_RS00630 613af0022035943196296daf7708c52e 248 SUPERFAMILY SSF52540 2 225 1.41E-59 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00630 613af0022035943196296daf7708c52e 248 Gene3D G3DSA:3.40.50.300 1 228 1.2E-66 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00630 613af0022035943196296daf7708c52e 248 Pfam PF00005 ABC transporter 22 165 2.2E-27 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS00630 613af0022035943196296daf7708c52e 248 PANTHER PTHR24220:SF432 3 244 1.9E-117 T 16-09-2016 BER92_RS10965 704ba936226ef793e27da514dddbfc18 186 Gene3D G3DSA:3.30.70.260 99 185 4.6E-20 T 16-09-2016 BER92_RS10965 704ba936226ef793e27da514dddbfc18 186 SUPERFAMILY SSF55021 10 93 9.58E-10 T 16-09-2016 BER92_RS10965 704ba936226ef793e27da514dddbfc18 186 SUPERFAMILY SSF55021 97 185 7.4E-19 T 16-09-2016 BER92_RS10965 704ba936226ef793e27da514dddbfc18 186 Gene3D G3DSA:3.30.70.260 31 94 4.1E-11 T 16-09-2016 BER92_RS10965 704ba936226ef793e27da514dddbfc18 186 Pfam PF13740 ACT domain 14 87 2.1E-13 T 16-09-2016 BER92_RS10965 704ba936226ef793e27da514dddbfc18 186 PIRSF PIRSF028103 11 186 1.2E-69 T 16-09-2016 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 BER92_RS10965 704ba936226ef793e27da514dddbfc18 186 PANTHER PTHR34875 1 186 4.8E-77 T 16-09-2016 BER92_RS10965 704ba936226ef793e27da514dddbfc18 186 PANTHER PTHR34875:SF3 1 186 4.8E-77 T 16-09-2016 BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 SUPERFAMILY SSF51735 118 288 2.09E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 90 1.1E-7 T 16-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 SUPERFAMILY SSF50129 9 140 1.12E-29 T 16-09-2016 IPR011032 GroES-like BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 Gene3D G3DSA:3.90.180.10 1 160 1.2E-33 T 16-09-2016 IPR011032 GroES-like BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 PANTHER PTHR11695:SF558 18 337 5.5E-108 T 16-09-2016 BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 SMART SM00829 16 337 1.5E-11 T 16-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 Gene3D G3DSA:3.40.50.720 161 254 6.0E-19 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 152 173 - T 16-09-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 PANTHER PTHR11695 18 337 5.5E-108 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 Pfam PF13602 Zinc-binding dehydrogenase 195 337 8.2E-20 T 16-09-2016 BER92_RS02230 a9116b866bbaf5e06963b752d33086c7 340 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 340 7.3E-135 T 16-09-2016 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:3.30.565.10 1610 1791 4.3E-30 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SMART SM00448 1947 2060 3.9E-31 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 PANTHER PTHR22617 723 892 7.7E-263 T 16-09-2016 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:3.40.50.2300 1947 2065 1.1E-34 T 16-09-2016 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:1.20.120.160 1303 1435 1.9E-25 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:1.20.120.160 740 878 1.3E-23 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:1.20.120.160 18 143 6.0E-13 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:1.20.120.160 904 1033 1.8E-12 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SUPERFAMILY SSF47226 13 133 3.66E-18 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 PANTHER PTHR22617 1300 1519 7.7E-263 T 16-09-2016 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 PANTHER PTHR22617 1586 1940 7.7E-263 T 16-09-2016 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:2.30.30.40 1793 1815 1.6E-19 T 16-09-2016 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:2.30.30.40 1879 1923 1.6E-19 T 16-09-2016 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1754 1772 4.7E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1698 1712 4.7E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1778 1791 4.7E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SMART SM00387 1653 1794 3.7E-17 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:1.10.287.560 1584 1609 1.7E-6 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Gene3D G3DSA:1.10.287.560 1472 1505 1.7E-6 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SMART SM00073 743 840 0.011 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SMART SM00073 1303 1401 1.3E-14 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 1472 1607 1.0E-4 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SUPERFAMILY SSF50341 1793 1923 9.81E-23 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SUPERFAMILY SSF47226 293 412 1.0E-8 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1657 1793 3.1E-15 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SUPERFAMILY SSF52172 1949 2068 1.27E-32 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SMART SM01231 1470 1608 1.1E-10 T 16-09-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Pfam PF01627 Hpt domain 13 111 8.4E-7 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Pfam PF01627 Hpt domain 1306 1399 8.8E-15 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Pfam PF01627 Hpt domain 746 836 2.7E-12 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Pfam PF01627 Hpt domain 907 994 7.3E-6 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SUPERFAMILY SSF47226 742 853 7.33E-22 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SUPERFAMILY SSF55874 1610 1791 2.1E-33 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SUPERFAMILY SSF47226 904 1025 1.44E-13 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Pfam PF01584 CheW-like domain 1798 1926 2.1E-18 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 Pfam PF00072 Response regulator receiver domain 1949 2059 3.2E-25 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SMART SM00260 1786 1924 3.9E-21 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 SUPERFAMILY SSF47226 1304 1420 1.28E-22 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 PANTHER PTHR22617:SF20 1300 1519 7.7E-263 T 16-09-2016 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 PANTHER PTHR22617:SF20 723 892 7.7E-263 T 16-09-2016 BER92_RS04185 29ccfc2c0e31f708fc4d59c33f8ba21a 2071 PANTHER PTHR22617:SF20 1586 1940 7.7E-263 T 16-09-2016 BER92_RS15715 2d462effbd25a36a944ffe24d8d43b07 127 Pfam PF14346 Domain of unknown function (DUF4398) 28 117 3.5E-15 T 16-09-2016 IPR025511 Domain of unknown function DUF4398 BER92_RS12095 9af8b11137b64f5a32e8a069532abc57 189 Pfam PF05233 PHB accumulation regulatory domain 70 109 1.4E-18 T 16-09-2016 IPR007897 PHB accumulation regulatory BER92_RS12095 9af8b11137b64f5a32e8a069532abc57 189 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 6 65 7.0E-28 T 16-09-2016 IPR012909 PHA accumulation regulator DNA-binding, N-terminal BER92_RS12095 9af8b11137b64f5a32e8a069532abc57 189 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 5 111 4.0E-53 T 16-09-2016 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR BER92_RS06980 533104f81b29995612684acbbf7602cd 299 PANTHER PTHR11649:SF3 8 299 3.3E-112 T 16-09-2016 BER92_RS06980 533104f81b29995612684acbbf7602cd 299 SUPERFAMILY SSF52540 13 207 6.45E-43 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06980 533104f81b29995612684acbbf7602cd 299 Pfam PF07650 KH domain 211 286 2.3E-19 T 16-09-2016 IPR004044 K Homology domain, type 2 GO:0003723 BER92_RS06980 533104f81b29995612684acbbf7602cd 299 Pfam PF01926 50S ribosome-binding GTPase 13 127 4.8E-23 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS06980 533104f81b29995612684acbbf7602cd 299 Gene3D G3DSA:3.30.300.20 195 294 2.0E-35 T 16-09-2016 IPR015946 K homology domain-like, alpha/beta BER92_RS06980 533104f81b29995612684acbbf7602cd 299 PANTHER PTHR11649 8 299 3.3E-112 T 16-09-2016 BER92_RS06980 533104f81b29995612684acbbf7602cd 299 Hamap MF_00367 GTPase Era [era]. 8 298 34.409 T 16-09-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 BER92_RS06980 533104f81b29995612684acbbf7602cd 299 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 13 33 1.3E-6 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS06980 533104f81b29995612684acbbf7602cd 299 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 62 77 1.3E-6 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS06980 533104f81b29995612684acbbf7602cd 299 Gene3D G3DSA:3.40.50.300 9 194 9.4E-42 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06980 533104f81b29995612684acbbf7602cd 299 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 169 5.7E-26 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS06980 533104f81b29995612684acbbf7602cd 299 SUPERFAMILY SSF54814 184 299 3.6E-38 T 16-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 BER92_RS06980 533104f81b29995612684acbbf7602cd 299 TIGRFAM TIGR00436 era: GTP-binding protein Era 12 281 6.5E-77 T 16-09-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.3E-10 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.3E-10 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.3E-10 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 Gene3D G3DSA:1.10.10.10 134 204 1.8E-22 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 SMART SM00448 4 118 1.2E-17 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 Gene3D G3DSA:3.40.50.2300 3 130 4.7E-29 T 16-09-2016 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 Pfam PF00072 Response regulator receiver domain 6 117 1.8E-18 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 2.3E-17 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 SUPERFAMILY SSF46894 129 204 3.74E-19 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 PANTHER PTHR26402:SF511 4 202 7.0E-68 T 16-09-2016 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 PANTHER PTHR26402 4 202 7.0E-68 T 16-09-2016 BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 SUPERFAMILY SSF52172 4 153 3.98E-26 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS03190 258fdef4f8980e71f10735c9a0c8a89b 212 SMART SM00421 146 203 9.0E-19 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS15915 d2440236d20a0c3b009c4739a7f36af4 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 156 12.141 T 16-09-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BER92_RS15915 d2440236d20a0c3b009c4739a7f36af4 156 Gene3D G3DSA:1.20.5.620 63 122 5.3E-17 T 16-09-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain BER92_RS15915 d2440236d20a0c3b009c4739a7f36af4 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 1.6E-39 T 16-09-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 BER92_RS15915 d2440236d20a0c3b009c4739a7f36af4 156 SUPERFAMILY SSF81573 62 121 2.22E-12 T 16-09-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain BER92_RS15915 d2440236d20a0c3b009c4739a7f36af4 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 3.0E-29 T 16-09-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BER92_RS15915 d2440236d20a0c3b009c4739a7f36af4 156 PANTHER PTHR33445 1 156 1.3E-41 T 16-09-2016 BER92_RS03995 bfe3c626c74f4b83e7f56a2f74a34174 252 Gene3D G3DSA:3.40.50.1000 18 93 2.2E-39 T 16-09-2016 IPR023214 HAD-like domain BER92_RS03995 bfe3c626c74f4b83e7f56a2f74a34174 252 Gene3D G3DSA:3.40.50.1000 169 248 2.2E-39 T 16-09-2016 IPR023214 HAD-like domain BER92_RS03995 bfe3c626c74f4b83e7f56a2f74a34174 252 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 19 246 1.2E-39 T 16-09-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 BER92_RS03995 bfe3c626c74f4b83e7f56a2f74a34174 252 PANTHER PTHR10788 7 252 1.5E-33 T 16-09-2016 BER92_RS03995 bfe3c626c74f4b83e7f56a2f74a34174 252 PANTHER PTHR10788:SF42 7 252 1.5E-33 T 16-09-2016 BER92_RS03995 bfe3c626c74f4b83e7f56a2f74a34174 252 SUPERFAMILY SSF56784 19 246 4.45E-40 T 16-09-2016 IPR023214 HAD-like domain BER92_RS03995 bfe3c626c74f4b83e7f56a2f74a34174 252 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 20 214 1.6E-18 T 16-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 BER92_RS03995 bfe3c626c74f4b83e7f56a2f74a34174 252 Pfam PF02358 Trehalose-phosphatase 21 235 9.5E-34 T 16-09-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 BER92_RS12240 13c02c64ebbdcb80d4ca8d59df09bf68 431 PIRSF PIRSF003085 14 425 1.5E-114 T 16-09-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 BER92_RS12240 13c02c64ebbdcb80d4ca8d59df09bf68 431 PANTHER PTHR10108:SF795 73 329 1.1E-122 T 16-09-2016 BER92_RS12240 13c02c64ebbdcb80d4ca8d59df09bf68 431 PANTHER PTHR10108:SF795 350 429 1.1E-122 T 16-09-2016 BER92_RS12240 13c02c64ebbdcb80d4ca8d59df09bf68 431 Gene3D G3DSA:3.40.50.150 132 413 8.2E-92 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS12240 13c02c64ebbdcb80d4ca8d59df09bf68 431 Pfam PF02353 Mycolic acid cyclopropane synthetase 138 406 2.3E-75 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS12240 13c02c64ebbdcb80d4ca8d59df09bf68 431 PANTHER PTHR10108 73 329 1.1E-122 T 16-09-2016 BER92_RS12240 13c02c64ebbdcb80d4ca8d59df09bf68 431 PANTHER PTHR10108 350 429 1.1E-122 T 16-09-2016 BER92_RS12240 13c02c64ebbdcb80d4ca8d59df09bf68 431 SMART SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. 157 375 0.0085 T 16-09-2016 IPR020803 Polyketide synthase, methyltransferase domain BER92_RS12240 13c02c64ebbdcb80d4ca8d59df09bf68 431 SUPERFAMILY SSF53335 23 369 2.17E-73 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 SMART SM00829 16 323 7.3E-35 T 16-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 Gene3D G3DSA:3.40.50.720 149 262 8.2E-29 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 6 325 5.1E-128 T 16-09-2016 IPR014189 Quinone oxidoreductase PIG3 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 Pfam PF13602 Zinc-binding dehydrogenase 186 323 1.6E-26 T 16-09-2016 BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 SUPERFAMILY SSF50129 12 141 5.33E-35 T 16-09-2016 IPR011032 GroES-like BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 Gene3D G3DSA:3.90.180.10 5 148 3.7E-42 T 16-09-2016 IPR011032 GroES-like BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 SUPERFAMILY SSF51735 114 288 2.25E-45 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 PANTHER PTHR11695:SF28 21 325 1.4E-116 T 16-09-2016 BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 90 9.9E-7 T 16-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BER92_RS03850 a15ccb28c63b9380997d11508fba5343 325 PANTHER PTHR11695 21 325 1.4E-116 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS15615 e7259901a65eb725c4f3f69c2b65db05 248 SMART SM00893 23 211 1.5E-54 T 16-09-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 BER92_RS15615 e7259901a65eb725c4f3f69c2b65db05 248 SUPERFAMILY SSF52402 1 244 1.4E-75 T 16-09-2016 BER92_RS15615 e7259901a65eb725c4f3f69c2b65db05 248 PANTHER PTHR21294 1 248 6.1E-160 T 16-09-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 BER92_RS15615 e7259901a65eb725c4f3f69c2b65db05 248 PANTHER PTHR21294:SF6 1 248 6.1E-160 T 16-09-2016 BER92_RS15615 e7259901a65eb725c4f3f69c2b65db05 248 Pfam PF01012 Electron transfer flavoprotein domain 26 206 2.4E-40 T 16-09-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 BER92_RS15615 e7259901a65eb725c4f3f69c2b65db05 248 Gene3D G3DSA:3.40.50.620 1 244 2.2E-90 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS15615 e7259901a65eb725c4f3f69c2b65db05 248 PIRSF PIRSF000090 1 248 1.3E-79 T 16-09-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 BER92_RS12505 5d461e00235ac90bf45ba395eba8cfe4 337 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 6.7E-16 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS12505 5d461e00235ac90bf45ba395eba8cfe4 337 Gene3D G3DSA:1.10.10.10 6 86 3.5E-22 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS12505 5d461e00235ac90bf45ba395eba8cfe4 337 Gene3D G3DSA:3.40.190.10 183 268 1.3E-17 T 16-09-2016 BER92_RS12505 5d461e00235ac90bf45ba395eba8cfe4 337 PANTHER PTHR30537:SF25 1 317 6.6E-195 T 16-09-2016 BER92_RS12505 5d461e00235ac90bf45ba395eba8cfe4 337 Gene3D G3DSA:3.40.190.10 98 182 1.8E-19 T 16-09-2016 BER92_RS12505 5d461e00235ac90bf45ba395eba8cfe4 337 SUPERFAMILY SSF46785 8 92 1.36E-19 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS12505 5d461e00235ac90bf45ba395eba8cfe4 337 Pfam PF03466 LysR substrate binding domain 93 300 5.8E-40 T 16-09-2016 IPR005119 LysR, substrate-binding BER92_RS12505 5d461e00235ac90bf45ba395eba8cfe4 337 SUPERFAMILY SSF53850 94 304 9.77E-41 T 16-09-2016 BER92_RS12505 5d461e00235ac90bf45ba395eba8cfe4 337 PANTHER PTHR30537 1 317 6.6E-195 T 16-09-2016 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 PIRSF PIRSF002811 1 580 1.4E-137 T 16-09-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Pfam PF10410 DnaB-helicase binding domain of primase 371 424 3.3E-6 T 16-09-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 TIGRFAM TIGR01391 dnaG: DNA primase 3 419 3.6E-137 T 16-09-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Pfam PF13155 Toprim-like 264 350 2.1E-15 T 16-09-2016 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 PANTHER PTHR30313 2 581 1.7E-151 T 16-09-2016 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Pfam PF08275 DNA primase catalytic core, N-terminal domain 124 253 2.9E-38 T 16-09-2016 IPR013264 DNA primase, catalytic core, N-terminal BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 SUPERFAMILY SSF57783 1 99 1.21E-35 T 16-09-2016 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 5.7E-28 T 16-09-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 SUPERFAMILY SSF56731 114 422 2.35E-100 T 16-09-2016 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Gene3D G3DSA:3.40.1360.10 243 368 9.0E-45 T 16-09-2016 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Gene3D G3DSA:1.10.860.10 439 579 1.2E-40 T 16-09-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Gene3D G3DSA:3.90.580.10 2 100 2.6E-39 T 16-09-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Hamap MF_00974 DNA primase [dnaG]. 3 579 27.897 T 16-09-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Gene3D G3DSA:1.20.50.20 371 423 1.0E-5 T 16-09-2016 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 SMART SM00766 450 575 7.1E-33 T 16-09-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Pfam PF01807 CHC2 zinc finger 5 100 1.1E-37 T 16-09-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 Gene3D G3DSA:3.90.980.10 113 242 6.1E-40 T 16-09-2016 IPR013264 DNA primase, catalytic core, N-terminal BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 SUPERFAMILY SSF117023 447 578 1.57E-33 T 16-09-2016 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 SMART SM00400 35 89 6.2E-32 T 16-09-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 BER92_RS18245 65f7985b9c55e4741664b32dcf46ca79 581 SMART SM00493 261 332 4.9E-22 T 16-09-2016 IPR006171 Toprim domain BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.9E-14 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.9E-14 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.9E-14 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 4.9E-14 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.9E-14 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 Gene3D G3DSA:1.10.287.990 21 81 9.6E-13 T 16-09-2016 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 16-09-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 PANTHER PTHR11404 8 191 1.1E-89 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 PANTHER PTHR11404:SF8 8 191 1.1E-89 T 16-09-2016 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 PIRSF PIRSF000349 1 192 1.0E-72 T 16-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 SUPERFAMILY SSF54719 85 191 1.07E-42 T 16-09-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 7 81 1.1E-18 T 16-09-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 SUPERFAMILY SSF46609 2 83 1.44E-23 T 16-09-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS07385 ebb8d4ea3b2035017b4199699c18d22a 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 190 1.4E-38 T 16-09-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS11310 4861439822e7d3d684ccc37340c916ae 318 SUPERFAMILY SSF56436 53 315 1.33E-45 T 16-09-2016 IPR016187 C-type lectin fold BER92_RS11310 4861439822e7d3d684ccc37340c916ae 318 PANTHER PTHR23150 53 316 1.2E-24 T 16-09-2016 BER92_RS11310 4861439822e7d3d684ccc37340c916ae 318 Gene3D G3DSA:3.90.1580.10 43 316 1.0E-44 T 16-09-2016 IPR005532 Sulfatase-modifying factor enzyme BER92_RS11310 4861439822e7d3d684ccc37340c916ae 318 Pfam PF03781 Sulfatase-modifying factor enzyme 1 52 267 1.3E-35 T 16-09-2016 IPR005532 Sulfatase-modifying factor enzyme BER92_RS13690 54d05300d4b530815a647b29e6abcbb1 290 PIRSF PIRSF005052 6 290 3.4E-110 T 16-09-2016 IPR005337 RapZ-like family GO:0005524 BER92_RS13690 54d05300d4b530815a647b29e6abcbb1 290 SUPERFAMILY SSF52540 2 159 1.52E-11 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13690 54d05300d4b530815a647b29e6abcbb1 290 Pfam PF03668 P-loop ATPase protein family 8 287 1.9E-95 T 16-09-2016 IPR005337 RapZ-like family GO:0005524 BER92_RS13690 54d05300d4b530815a647b29e6abcbb1 290 PANTHER PTHR30448:SF0 1 290 2.2E-134 T 16-09-2016 BER92_RS13690 54d05300d4b530815a647b29e6abcbb1 290 Gene3D G3DSA:3.40.50.300 5 158 1.9E-12 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13690 54d05300d4b530815a647b29e6abcbb1 290 PANTHER PTHR30448 1 290 2.2E-134 T 16-09-2016 BER92_RS13690 54d05300d4b530815a647b29e6abcbb1 290 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 6 290 38.211 T 16-09-2016 IPR005337 RapZ-like family GO:0005524 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 PANTHER PTHR11609 1 354 3.3E-138 T 16-09-2016 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 3 356 1.3E-115 T 16-09-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 351 41.869 T 16-09-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 PANTHER PTHR11609 371 376 3.3E-138 T 16-09-2016 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 PANTHER PTHR11609:SF5 1 354 3.3E-138 T 16-09-2016 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 SUPERFAMILY SSF56059 98 299 7.78E-63 T 16-09-2016 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 SUPERFAMILY SSF51246 304 370 3.45E-15 T 16-09-2016 IPR011054 Rudiment single hybrid motif BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 SUPERFAMILY SSF52440 2 95 6.62E-22 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 Gene3D G3DSA:3.30.1490.20 113 180 1.1E-22 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 Pfam PF02222 ATP-grasp domain 107 279 3.1E-57 T 16-09-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 Gene3D G3DSA:3.40.50.20 2 106 5.0E-30 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 Gene3D G3DSA:3.30.470.20 181 359 8.0E-62 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS07380 82a8a8d2aef08d07978af31228c6103e 381 PANTHER PTHR11609:SF5 371 376 3.3E-138 T 16-09-2016 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 4.9E-9 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 4.9E-9 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 PANTHER PTHR11751:SF333 119 142 3.0E-35 T 16-09-2016 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 SMART SM00345 9 68 7.2E-17 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 Pfam PF07702 UTRA domain 89 227 1.5E-28 T 16-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 SUPERFAMILY SSF46785 3 72 4.4E-20 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04415 4a5bea69100051993992d44227f28d55 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 68 2.1E-17 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 PANTHER PTHR11751 9 71 3.0E-35 T 16-09-2016 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 PANTHER PTHR11751 119 142 3.0E-35 T 16-09-2016 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 SUPERFAMILY SSF64288 56 233 2.2E-37 T 16-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain BER92_RS04415 4a5bea69100051993992d44227f28d55 245 Gene3D G3DSA:3.40.1410.10 65 233 2.4E-37 T 16-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain BER92_RS04415 4a5bea69100051993992d44227f28d55 245 SMART SM00866 89 229 2.0E-30 T 16-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BER92_RS04415 4a5bea69100051993992d44227f28d55 245 Gene3D G3DSA:1.10.10.10 5 64 2.1E-22 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04415 4a5bea69100051993992d44227f28d55 245 PANTHER PTHR11751:SF333 9 71 3.0E-35 T 16-09-2016 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 PANTHER PTHR38687 2 97 3.4E-56 T 16-09-2016 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 Gene3D G3DSA:3.30.70.1070 272 350 2.2E-19 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 Gene3D G3DSA:3.30.70.1070 102 171 1.6E-13 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 Pfam PF05036 Sporulation related domain 105 182 5.5E-14 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 Pfam PF05036 Sporulation related domain 277 350 7.5E-17 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 PANTHER PTHR38687 176 352 3.4E-56 T 16-09-2016 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 SUPERFAMILY SSF110997 276 350 4.05E-16 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 SUPERFAMILY SSF110997 107 168 4.58E-10 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 PANTHER PTHR38687:SF1 2 97 3.4E-56 T 16-09-2016 BER92_RS15370 3c5db668e4549a9c4deac536f7818488 353 PANTHER PTHR38687:SF1 176 352 3.4E-56 T 16-09-2016 BER92_RS02735 6c620bd7c684af3d07dbca5cddb5dfc2 207 PANTHER PTHR18901:SF25 10 207 1.8E-88 T 16-09-2016 BER92_RS02735 6c620bd7c684af3d07dbca5cddb5dfc2 207 PANTHER PTHR18901 10 207 1.8E-88 T 16-09-2016 BER92_RS02735 6c620bd7c684af3d07dbca5cddb5dfc2 207 SUPERFAMILY SSF56784 14 201 3.25E-34 T 16-09-2016 IPR023214 HAD-like domain BER92_RS02735 6c620bd7c684af3d07dbca5cddb5dfc2 207 Gene3D G3DSA:3.40.50.1000 12 34 1.6E-28 T 16-09-2016 IPR023214 HAD-like domain BER92_RS02735 6c620bd7c684af3d07dbca5cddb5dfc2 207 Gene3D G3DSA:3.40.50.1000 74 196 1.6E-28 T 16-09-2016 IPR023214 HAD-like domain BER92_RS02735 6c620bd7c684af3d07dbca5cddb5dfc2 207 Pfam PF00702 haloacid dehalogenase-like hydrolase 73 174 1.1E-13 T 16-09-2016 BER92_RS02735 6c620bd7c684af3d07dbca5cddb5dfc2 207 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 20 174 4.2E-7 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS01670 aa383ae19dadfb4f085d87bc94feebba 447 SUPERFAMILY SSF56801 9 441 2.49E-41 T 16-09-2016 BER92_RS01670 aa383ae19dadfb4f085d87bc94feebba 447 Gene3D G3DSA:3.40.50.980 132 292 3.0E-11 T 16-09-2016 BER92_RS01670 aa383ae19dadfb4f085d87bc94feebba 447 Gene3D G3DSA:3.30.300.30 350 439 1.1E-6 T 16-09-2016 BER92_RS01670 aa383ae19dadfb4f085d87bc94feebba 447 Pfam PF00501 AMP-binding enzyme 112 307 1.3E-17 T 16-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 BER92_RS07030 616e2f07656196cd3b7c94f5c1f81653 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 67 1.4E-29 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS07030 616e2f07656196cd3b7c94f5c1f81653 69 SMART SM00357 3 68 1.6E-28 T 16-09-2016 IPR011129 Cold shock protein GO:0003676 BER92_RS07030 616e2f07656196cd3b7c94f5c1f81653 69 PRINTS PR00050 Cold shock protein signature 4 19 5.0E-13 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS07030 616e2f07656196cd3b7c94f5c1f81653 69 PRINTS PR00050 Cold shock protein signature 41 59 5.0E-13 T 16-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BER92_RS07030 616e2f07656196cd3b7c94f5c1f81653 69 PIRSF PIRSF002599 1 69 8.8E-23 T 16-09-2016 IPR012156 Cold shock, CspA GO:0003676 BER92_RS07030 616e2f07656196cd3b7c94f5c1f81653 69 SUPERFAMILY SSF50249 1 68 1.89E-22 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS07030 616e2f07656196cd3b7c94f5c1f81653 69 Gene3D G3DSA:2.40.50.140 1 66 6.7E-30 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS07030 616e2f07656196cd3b7c94f5c1f81653 69 PANTHER PTHR11544 1 69 2.8E-37 T 16-09-2016 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 SMART SM00864 15 207 5.5E-112 T 16-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 PANTHER PTHR30314:SF3 4 355 1.4E-191 T 16-09-2016 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 SUPERFAMILY SSF55307 206 321 8.01E-43 T 16-09-2016 IPR008280 Tubulin/FtsZ, C-terminal BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 Gene3D G3DSA:3.30.1330.20 217 321 1.3E-46 T 16-09-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 174 3.0E-40 T 16-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 PRINTS PR00423 Cell division protein FtsZ signature 128 149 3.9E-52 T 16-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 PRINTS PR00423 Cell division protein FtsZ signature 191 213 3.9E-52 T 16-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 PRINTS PR00423 Cell division protein FtsZ signature 214 235 3.9E-52 T 16-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 PRINTS PR00423 Cell division protein FtsZ signature 100 120 3.9E-52 T 16-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 SMART SM00865 209 327 6.2E-57 T 16-09-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 Pfam PF12327 FtsZ family, C-terminal domain 224 318 4.9E-38 T 16-09-2016 IPR024757 Cell division protein FtsZ, C-terminal BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 PANTHER PTHR30314:SF3 371 412 1.4E-191 T 16-09-2016 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 ProSitePatterns PS01135 FtsZ protein signature 2. 99 120 - T 16-09-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 Gene3D G3DSA:3.40.50.1440 16 216 1.5E-91 T 16-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 11 355 37.688 T 16-09-2016 IPR000158 Cell division protein FtsZ GO:0005525 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 PANTHER PTHR30314 4 355 1.4E-191 T 16-09-2016 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 PANTHER PTHR30314 371 412 1.4E-191 T 16-09-2016 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 SUPERFAMILY SSF52490 15 210 1.57E-69 T 16-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 BER92_RS03800 dffb35360e1a60069631146c007ccf75 414 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 11 330 1.5E-130 T 16-09-2016 IPR000158 Cell division protein FtsZ GO:0005525 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 181 196 - T 16-09-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 SMART SM00928 343 388 1.4E-24 T 16-09-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 21 429 2.3E-198 T 16-09-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 PANTHER PTHR11780:SF10 20 429 9.8E-215 T 16-09-2016 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 356 367 - T 16-09-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 346 426 4.3E-29 T 16-09-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 PANTHER PTHR11780 20 429 9.8E-215 T 16-09-2016 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 SUPERFAMILY SSF142019 19 252 3.66E-78 T 16-09-2016 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 62 233 9.5E-43 T 16-09-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 SUPERFAMILY SSF142984 255 338 4.84E-23 T 16-09-2016 BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 Pfam PF10531 SLBB domain 257 305 2.6E-11 T 16-09-2016 IPR019554 Soluble ligand binding domain BER92_RS07265 b72a0664be05a04bbbf0c3c5f37ffe2d 444 SUPERFAMILY SSF140490 339 437 1.7E-34 T 16-09-2016 BER92_RS04955 67de06edfd45c4faf330f76e24125b5a 361 PANTHER PTHR11825 8 359 1.1E-143 T 16-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 BER92_RS04955 67de06edfd45c4faf330f76e24125b5a 361 PANTHER PTHR11825:SF2 8 359 1.1E-143 T 16-09-2016 BER92_RS04955 67de06edfd45c4faf330f76e24125b5a 361 SUPERFAMILY SSF56752 13 357 1.7E-112 T 16-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 BER92_RS04955 67de06edfd45c4faf330f76e24125b5a 361 ProSitePatterns PS00770 Aminotransferases class-IV signature. 236 266 - T 16-09-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 BER92_RS04955 67de06edfd45c4faf330f76e24125b5a 361 Pfam PF01063 Amino-transferase class IV 73 316 2.9E-34 T 16-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 BER92_RS04955 67de06edfd45c4faf330f76e24125b5a 361 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 47 360 2.3E-142 T 16-09-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 BER92_RS04955 67de06edfd45c4faf330f76e24125b5a 361 Gene3D G3DSA:3.30.470.10 15 177 2.7E-68 T 16-09-2016 BER92_RS04955 67de06edfd45c4faf330f76e24125b5a 361 PIRSF PIRSF006468 4 361 2.4E-133 T 16-09-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 BER92_RS04955 67de06edfd45c4faf330f76e24125b5a 361 Gene3D G3DSA:3.20.10.10 178 347 2.2E-68 T 16-09-2016 BER92_RS06985 de63b60238c10ad7bf82b0bd5155dd59 240 Pfam PF02565 Recombination protein O C terminal 84 231 3.4E-15 T 16-09-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BER92_RS06985 de63b60238c10ad7bf82b0bd5155dd59 240 SUPERFAMILY SSF57863 87 154 1.6E-5 T 16-09-2016 BER92_RS06985 de63b60238c10ad7bf82b0bd5155dd59 240 Hamap MF_00201 DNA repair protein RecO [recO]. 2 236 19.325 T 16-09-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BER92_RS06985 de63b60238c10ad7bf82b0bd5155dd59 240 SUPERFAMILY SSF50249 3 78 1.63E-11 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS06985 de63b60238c10ad7bf82b0bd5155dd59 240 TIGRFAM TIGR00613 reco: DNA repair protein RecO 7 153 9.6E-21 T 16-09-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BER92_RS06985 de63b60238c10ad7bf82b0bd5155dd59 240 PANTHER PTHR33991 2 240 8.0E-54 T 16-09-2016 BER92_RS06985 de63b60238c10ad7bf82b0bd5155dd59 240 Pfam PF11967 Recombination protein O N terminal 3 78 5.1E-20 T 16-09-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal BER92_RS06985 de63b60238c10ad7bf82b0bd5155dd59 240 Gene3D G3DSA:2.40.50.140 5 83 1.4E-9 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 SUPERFAMILY SSF52266 263 292 2.66E-16 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 SUPERFAMILY SSF52266 21 229 2.66E-16 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 SMART SM00869 327 584 4.2E-32 T 16-09-2016 IPR005546 Autotransporter beta-domain BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 PANTHER PTHR22835 1 425 7.1E-86 T 16-09-2016 BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 SUPERFAMILY SSF103515 310 563 3.14E-32 T 16-09-2016 IPR005546 Autotransporter beta-domain BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 PANTHER PTHR22835:SF222 1 425 7.1E-86 T 16-09-2016 BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 Gene3D G3DSA:2.40.128.130 323 575 2.6E-43 T 16-09-2016 IPR005546 Autotransporter beta-domain BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 Pfam PF03797 Autotransporter beta-domain 330 573 8.3E-44 T 16-09-2016 IPR005546 Autotransporter beta-domain BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 PIRSF PIRSF037375 1 594 2.0E-197 T 16-09-2016 IPR017186 Lipase, autotransporter EstA BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 22 285 7.8E-11 T 16-09-2016 IPR001087 GDSL lipase/esterase GO:0016788 BER92_RS05375 e9912304e7de5dbb12d46a931dc1824f 594 Gene3D G3DSA:3.40.50.1110 5 294 4.6E-72 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 Pfam PF08448 PAS fold 14 122 1.5E-18 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 Gene3D G3DSA:1.10.10.60 128 184 1.7E-14 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 Gene3D G3DSA:3.30.450.20 10 119 6.1E-11 T 16-09-2016 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 198 213 2.7E-6 T 16-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 213 229 2.7E-6 T 16-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 PANTHER PTHR11019:SF113 130 229 1.6E-38 T 16-09-2016 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 SUPERFAMILY SSF46689 130 180 1.43E-8 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 SMART SM00342 147 229 2.8E-26 T 16-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 Pfam PF12833 Helix-turn-helix domain 153 230 1.5E-23 T 16-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 SUPERFAMILY SSF46689 184 230 6.27E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 SUPERFAMILY SSF55785 10 119 9.25E-11 T 16-09-2016 IPR000014 PAS domain BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 184 225 - T 16-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 Gene3D G3DSA:1.10.10.60 185 230 1.6E-14 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 PANTHER PTHR11019 130 229 1.6E-38 T 16-09-2016 BER92_RS06195 761aa2efac3f1e082c8a969e338c468d 235 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 132 176 - T 16-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BER92_RS12445 6b4726a8c0cdc03e057d553d2f642fd0 159 Gene3D G3DSA:3.10.50.40 121 140 1.4E-18 T 16-09-2016 BER92_RS12445 6b4726a8c0cdc03e057d553d2f642fd0 159 Gene3D G3DSA:3.10.50.40 2 69 1.4E-18 T 16-09-2016 BER92_RS12445 6b4726a8c0cdc03e057d553d2f642fd0 159 SUPERFAMILY SSF54534 2 139 6.87E-33 T 16-09-2016 BER92_RS12445 6b4726a8c0cdc03e057d553d2f642fd0 159 PANTHER PTHR10516 1 83 7.4E-52 T 16-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type BER92_RS12445 6b4726a8c0cdc03e057d553d2f642fd0 159 PANTHER PTHR10516:SF316 128 159 7.4E-52 T 16-09-2016 BER92_RS12445 6b4726a8c0cdc03e057d553d2f642fd0 159 PANTHER PTHR10516:SF316 1 83 7.4E-52 T 16-09-2016 BER92_RS12445 6b4726a8c0cdc03e057d553d2f642fd0 159 PANTHER PTHR10516 128 159 7.4E-52 T 16-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type BER92_RS12445 6b4726a8c0cdc03e057d553d2f642fd0 159 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 136 5.8E-11 T 16-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 BER92_RS15300 1e5b9625db0308191f6bdd1373b2b5aa 548 PANTHER PTHR22726:SF10 2 287 1.1E-85 T 16-09-2016 BER92_RS15300 1e5b9625db0308191f6bdd1373b2b5aa 548 PANTHER PTHR22726 2 287 1.1E-85 T 16-09-2016 BER92_RS15300 1e5b9625db0308191f6bdd1373b2b5aa 548 Gene3D G3DSA:3.30.2010.10 61 142 2.9E-19 T 16-09-2016 BER92_RS15300 1e5b9625db0308191f6bdd1373b2b5aa 548 SUPERFAMILY SSF48452 338 427 7.38E-6 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS15300 1e5b9625db0308191f6bdd1373b2b5aa 548 Gene3D G3DSA:1.25.40.10 364 506 3.0E-9 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS15300 1e5b9625db0308191f6bdd1373b2b5aa 548 Pfam PF01435 Peptidase family M48 66 259 4.1E-37 T 16-09-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BER92_RS15300 1e5b9625db0308191f6bdd1373b2b5aa 548 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 1 536 28.771 T 16-09-2016 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 BER92_RS06645 5d0c357d63c4025461019e5f14a78fad 139 PANTHER PTHR40457 3 104 4.2E-24 T 16-09-2016 BER92_RS06645 5d0c357d63c4025461019e5f14a78fad 139 Pfam PF02253 Phospholipase A1 3 102 2.7E-23 T 16-09-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 BER92_RS06645 5d0c357d63c4025461019e5f14a78fad 139 SUPERFAMILY SSF56931 4 106 1.83E-20 T 16-09-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 BER92_RS06645 5d0c357d63c4025461019e5f14a78fad 139 Gene3D G3DSA:2.40.230.10 4 104 3.6E-20 T 16-09-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 BER92_RS05870 25b38a9ece8efabf59a601eafd155776 187 Gene3D G3DSA:1.20.950.20 3 73 8.8E-4 T 16-09-2016 BER92_RS05870 25b38a9ece8efabf59a601eafd155776 187 PANTHER PTHR30529:SF5 1 183 6.6E-76 T 16-09-2016 BER92_RS05870 25b38a9ece8efabf59a601eafd155776 187 PANTHER PTHR30529 1 183 6.6E-76 T 16-09-2016 BER92_RS05870 25b38a9ece8efabf59a601eafd155776 187 SUPERFAMILY SSF81342 4 182 4.24E-36 T 16-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 BER92_RS05870 25b38a9ece8efabf59a601eafd155776 187 Pfam PF01292 Prokaryotic cytochrome b561 8 179 4.5E-30 T 16-09-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 BER92_RS16200 986ad7af80913edb2acb32a5b09431d1 434 PANTHER PTHR33803 1 434 0.0 T 16-09-2016 BER92_RS16200 986ad7af80913edb2acb32a5b09431d1 434 Pfam PF01609 Transposase DDE domain 284 421 3.3E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16200 986ad7af80913edb2acb32a5b09431d1 434 Pfam PF05598 Transposase domain (DUF772) 59 133 8.1E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS16200 986ad7af80913edb2acb32a5b09431d1 434 PANTHER PTHR33803:SF1 1 434 0.0 T 16-09-2016 BER92_RS07955 b77addd7b16d877f6930e4ed8718d45f 554 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 5.3E-142 T 16-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 BER92_RS07955 b77addd7b16d877f6930e4ed8718d45f 554 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 507 2.8E-19 T 16-09-2016 IPR003395 RecF/RecN/SMC, N-terminal BER92_RS07955 b77addd7b16d877f6930e4ed8718d45f 554 SUPERFAMILY SSF52540 1 198 7.8E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07955 b77addd7b16d877f6930e4ed8718d45f 554 SUPERFAMILY SSF52540 367 507 7.8E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07955 b77addd7b16d877f6930e4ed8718d45f 554 SUPERFAMILY SSF52540 286 338 7.8E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07955 b77addd7b16d877f6930e4ed8718d45f 554 PIRSF PIRSF003128 1 554 8.4E-144 T 16-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 BER92_RS07955 b77addd7b16d877f6930e4ed8718d45f 554 Gene3D G3DSA:3.40.50.300 1 203 8.5E-58 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07955 b77addd7b16d877f6930e4ed8718d45f 554 PANTHER PTHR11059 2 554 8.1E-160 T 16-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 BER92_RS07955 b77addd7b16d877f6930e4ed8718d45f 554 Gene3D G3DSA:3.40.50.300 426 496 2.2E-4 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07140 99c3f802419171cd27fa194cc1f82f43 135 PANTHER PTHR33993:SF1 1 129 8.5E-60 T 16-09-2016 BER92_RS07140 99c3f802419171cd27fa194cc1f82f43 135 SUPERFAMILY SSF54593 18 129 8.66E-19 T 16-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER92_RS07140 99c3f802419171cd27fa194cc1f82f43 135 Gene3D G3DSA:3.10.180.10 20 129 1.1E-20 T 16-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER92_RS07140 99c3f802419171cd27fa194cc1f82f43 135 PANTHER PTHR33993 1 129 8.5E-60 T 16-09-2016 BER92_RS16765 bf5e807e3842e554ce04053e7bf25139 267 PANTHER PTHR21091 1 230 1.3E-78 T 16-09-2016 BER92_RS16765 bf5e807e3842e554ce04053e7bf25139 267 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 79 112 - T 16-09-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 BER92_RS16765 bf5e807e3842e554ce04053e7bf25139 267 SUPERFAMILY SSF53790 1 244 1.83E-76 T 16-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 BER92_RS16765 bf5e807e3842e554ce04053e7bf25139 267 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 210 1.2E-51 T 16-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 BER92_RS16765 bf5e807e3842e554ce04053e7bf25139 267 PANTHER PTHR21091:SF16 1 230 1.3E-78 T 16-09-2016 BER92_RS16765 bf5e807e3842e554ce04053e7bf25139 267 Gene3D G3DSA:3.40.1010.10 1 114 3.9E-43 T 16-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 BER92_RS16765 bf5e807e3842e554ce04053e7bf25139 267 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 1 233 2.2E-89 T 16-09-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 BER92_RS16765 bf5e807e3842e554ce04053e7bf25139 267 Gene3D G3DSA:3.30.950.10 115 247 2.1E-48 T 16-09-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 SMART SM00997 238 400 1.0E-108 T 16-09-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 238 400 5.3E-80 T 16-09-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 Gene3D G3DSA:3.40.50.1480 366 480 3.0E-37 T 16-09-2016 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 472 4.9E-186 T 16-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 SUPERFAMILY SSF52283 190 237 3.12E-113 T 16-09-2016 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 SUPERFAMILY SSF52283 10 153 3.12E-113 T 16-09-2016 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 SUPERFAMILY SSF52283 401 480 3.12E-113 T 16-09-2016 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 Gene3D G3DSA:3.40.50.1480 10 152 8.0E-118 T 16-09-2016 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 Gene3D G3DSA:3.40.50.1480 189 276 8.0E-118 T 16-09-2016 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 Gene3D G3DSA:3.40.50.720 277 359 1.2E-12 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 PIRSF PIRSF001109 1 480 1.0E-189 T 16-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 SMART SM00996 12 479 0.0 T 16-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 12 479 1.8E-145 T 16-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 SUPERFAMILY SSF51735 238 400 1.68E-78 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 8 472 47.726 T 16-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 260 277 - T 16-09-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 PANTHER PTHR23420 2 151 0.0 T 16-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 PANTHER PTHR23420 188 480 0.0 T 16-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04550 5b363d2d8799545030f00cdf999d88fe 480 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 84 98 - T 16-09-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 Pfam PF00082 Subtilase family 162 451 7.0E-47 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 Gene3D G3DSA:3.40.50.200 108 461 1.2E-86 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 PANTHER PTHR10795:SF419 230 467 5.9E-91 T 16-09-2016 BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 PRINTS PR00723 Subtilisin serine protease family (S8) signature 162 181 5.4E-18 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 PRINTS PR00723 Subtilisin serine protease family (S8) signature 400 416 5.4E-18 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 PRINTS PR00723 Subtilisin serine protease family (S8) signature 227 240 5.4E-18 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 231 241 - T 16-09-2016 IPR022398 Peptidase S8, subtilisin, His-active site BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 401 411 - T 16-09-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 PANTHER PTHR10795 230 467 5.9E-91 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 167 177 - T 16-09-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 SUPERFAMILY SSF52743 224 463 1.18E-73 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 SUPERFAMILY SSF52743 149 197 1.18E-73 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 PANTHER PTHR10795:SF419 39 206 5.9E-91 T 16-09-2016 BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 486 552 1.5E-12 T 16-09-2016 IPR007280 Peptidase, C-terminal, archaeal/bacterial BER92_RS04970 f94f02daf69960754611d1d92e8126cb 566 PANTHER PTHR10795 39 206 5.9E-91 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS16560 31afe720b32cb41ed620797925eaf787 342 Gene3D G3DSA:3.90.180.10 3 143 3.6E-53 T 16-09-2016 IPR011032 GroES-like BER92_RS16560 31afe720b32cb41ed620797925eaf787 342 PANTHER PTHR11695 24 339 1.4E-178 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS16560 31afe720b32cb41ed620797925eaf787 342 Gene3D G3DSA:3.40.50.720 144 309 2.1E-59 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS16560 31afe720b32cb41ed620797925eaf787 342 SUPERFAMILY SSF50129 6 146 2.04E-38 T 16-09-2016 IPR011032 GroES-like BER92_RS16560 31afe720b32cb41ed620797925eaf787 342 PANTHER PTHR11695:SF557 24 339 1.4E-178 T 16-09-2016 BER92_RS16560 31afe720b32cb41ed620797925eaf787 342 SMART SM00829 20 339 1.8E-5 T 16-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BER92_RS16560 31afe720b32cb41ed620797925eaf787 342 Pfam PF00107 Zinc-binding dehydrogenase 161 298 3.1E-17 T 16-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BER92_RS16560 31afe720b32cb41ed620797925eaf787 342 SUPERFAMILY SSF51735 127 305 8.76E-41 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS16560 31afe720b32cb41ed620797925eaf787 342 Pfam PF16884 N-terminal domain of oxidoreductase 7 109 3.2E-35 T 16-09-2016 BER92_RS15925 e061e86c866b48237e44158b41493478 266 ProSitePatterns PS00449 ATP synthase a subunit signature. 196 205 - T 16-09-2016 IPR023011 ATPase, F0 complex, subunit A, active site BER92_RS15925 e061e86c866b48237e44158b41493478 266 PRINTS PR00123 ATP synthase A subunit signature 246 261 1.0E-12 T 16-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 BER92_RS15925 e061e86c866b48237e44158b41493478 266 PRINTS PR00123 ATP synthase A subunit signature 96 112 1.0E-12 T 16-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 BER92_RS15925 e061e86c866b48237e44158b41493478 266 PRINTS PR00123 ATP synthase A subunit signature 193 215 1.0E-12 T 16-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 BER92_RS15925 e061e86c866b48237e44158b41493478 266 PANTHER PTHR11410 1 266 1.8E-88 T 16-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 BER92_RS15925 e061e86c866b48237e44158b41493478 266 Gene3D G3DSA:1.20.120.220 89 266 8.7E-48 T 16-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 BER92_RS15925 e061e86c866b48237e44158b41493478 266 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 32 260 7.7E-42 T 16-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 BER92_RS15925 e061e86c866b48237e44158b41493478 266 PANTHER PTHR11410:SF7 1 266 1.8E-88 T 16-09-2016 BER92_RS15925 e061e86c866b48237e44158b41493478 266 Hamap MF_01393 ATP synthase subunit a [atpB]. 12 266 14.958 T 16-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 BER92_RS15925 e061e86c866b48237e44158b41493478 266 SUPERFAMILY SSF81336 88 260 1.31E-38 T 16-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 BER92_RS15925 e061e86c866b48237e44158b41493478 266 Pfam PF00119 ATP synthase A chain 39 260 4.3E-55 T 16-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 Pfam PF00270 DEAD/DEAH box helicase 37 89 1.3E-4 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 SUPERFAMILY SSF52540 102 114 4.06E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 SUPERFAMILY SSF52540 471 561 4.06E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 SUPERFAMILY SSF52540 189 311 4.06E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 SUPERFAMILY SSF52540 592 614 4.06E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 Gene3D G3DSA:3.40.50.300 195 244 3.4E-20 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 Gene3D G3DSA:3.40.50.300 26 123 3.4E-20 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 PANTHER PTHR11472:SF37 1 640 5.3E-203 T 16-09-2016 BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 SUPERFAMILY SSF52540 581 619 9.86E-23 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 SUPERFAMILY SSF52540 19 115 9.86E-23 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 SUPERFAMILY SSF52540 192 249 9.86E-23 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 SMART SM00491 494 622 1.6E-37 T 16-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 Pfam PF13307 Helicase C-terminal domain 479 635 9.7E-35 T 16-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BER92_RS04145 84cba49855bc6d2303f3680a235f4344 666 PANTHER PTHR11472 1 640 5.3E-203 T 16-09-2016 BER92_RS08475 43f97a4d371e730ab171b34c880940a2 320 SUPERFAMILY SSF55681 9 315 1.17E-65 T 16-09-2016 BER92_RS08475 43f97a4d371e730ab171b34c880940a2 320 PRINTS PR00982 Lysyl-tRNA synthetase signature 204 220 1.5E-6 T 16-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS08475 43f97a4d371e730ab171b34c880940a2 320 PRINTS PR00982 Lysyl-tRNA synthetase signature 26 36 1.5E-6 T 16-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS08475 43f97a4d371e730ab171b34c880940a2 320 PRINTS PR00982 Lysyl-tRNA synthetase signature 94 111 1.5E-6 T 16-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS08475 43f97a4d371e730ab171b34c880940a2 320 PANTHER PTHR22594:SF7 9 319 2.2E-96 T 16-09-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 BER92_RS08475 43f97a4d371e730ab171b34c880940a2 320 PANTHER PTHR22594 9 319 2.2E-96 T 16-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS08475 43f97a4d371e730ab171b34c880940a2 320 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 11 315 5.8E-110 T 16-09-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 BER92_RS08475 43f97a4d371e730ab171b34c880940a2 320 Pfam PF00152 tRNA synthetases class II (D, K and N) 9 315 9.5E-36 T 16-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS08475 43f97a4d371e730ab171b34c880940a2 320 Gene3D G3DSA:3.30.930.10 9 315 2.6E-56 T 16-09-2016 BER92_RS06865 dd9b1a13c94e40285dcad488538b5dfd 329 PANTHER PTHR30473:SF1 7 329 1.4E-173 T 16-09-2016 BER92_RS06865 dd9b1a13c94e40285dcad488538b5dfd 329 SUPERFAMILY SSF52540 117 292 5.65E-36 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06865 dd9b1a13c94e40285dcad488538b5dfd 329 Gene3D G3DSA:3.40.50.300 112 314 1.9E-84 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06865 dd9b1a13c94e40285dcad488538b5dfd 329 Pfam PF02562 PhoH-like protein 112 315 2.2E-92 T 16-09-2016 IPR003714 PhoH-like protein GO:0005524 BER92_RS06865 dd9b1a13c94e40285dcad488538b5dfd 329 PANTHER PTHR30473 7 329 1.4E-173 T 16-09-2016 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 PANTHER PTHR11117:SF8 29 711 9.9E-294 T 16-09-2016 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 Gene3D G3DSA:3.40.50.261 133 287 4.7E-29 T 16-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 152 289 3.0E-47 T 16-09-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 SUPERFAMILY SSF51735 1 139 2.87E-28 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 SMART SM00881 9 104 2.2E-14 T 16-09-2016 IPR003781 CoA-binding GO:0048037 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 Gene3D G3DSA:3.40.630.30 744 891 6.2E-16 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 SUPERFAMILY SSF52210 297 453 2.35E-37 T 16-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 SUPERFAMILY SSF52210 131 291 1.44E-35 T 16-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 Gene3D G3DSA:3.40.50.261 297 447 2.0E-14 T 16-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 Pfam PF13302 Acetyltransferase (GNAT) domain 743 877 1.9E-8 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 Pfam PF13549 ATP-grasp domain 482 706 2.9E-68 T 16-09-2016 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 SUPERFAMILY SSF55729 743 878 1.08E-18 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 SUPERFAMILY SSF56059 492 706 2.41E-26 T 16-09-2016 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 Pfam PF13380 CoA binding domain 14 135 4.0E-18 T 16-09-2016 IPR003781 CoA-binding GO:0048037 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 PANTHER PTHR11117 29 711 9.9E-294 T 16-09-2016 BER92_RS01795 478a6fa51fa3741cb8d279f5d2178016 902 Gene3D G3DSA:3.40.50.720 2 132 1.7E-29 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06610 7299c4576ecf83154dd081988819f4c2 168 Pfam PF00255 Glutathione peroxidase 6 111 1.1E-37 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS06610 7299c4576ecf83154dd081988819f4c2 168 SUPERFAMILY SSF52833 6 159 2.54E-59 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS06610 7299c4576ecf83154dd081988819f4c2 168 PIRSF PIRSF000303 1 162 1.6E-61 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS06610 7299c4576ecf83154dd081988819f4c2 168 PRINTS PR01011 Glutathione peroxidase family signature 57 73 4.8E-19 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS06610 7299c4576ecf83154dd081988819f4c2 168 PRINTS PR01011 Glutathione peroxidase family signature 123 132 4.8E-19 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS06610 7299c4576ecf83154dd081988819f4c2 168 PRINTS PR01011 Glutathione peroxidase family signature 22 39 4.8E-19 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS06610 7299c4576ecf83154dd081988819f4c2 168 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 16-09-2016 IPR029759 Glutathione peroxidase active site BER92_RS06610 7299c4576ecf83154dd081988819f4c2 168 Gene3D G3DSA:3.40.30.10 5 160 8.3E-68 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS06610 7299c4576ecf83154dd081988819f4c2 168 PANTHER PTHR11592 7 165 4.9E-80 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 Gene3D G3DSA:3.40.50.300 214 365 9.1E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 16-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 SMART SM00382 38 209 0.0027 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 Pfam PF00270 DEAD/DEAH box helicase 26 189 3.2E-44 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 PANTHER PTHR24031:SF180 1 433 2.0E-233 T 16-09-2016 BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 PANTHER PTHR24031 1 433 2.0E-233 T 16-09-2016 BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 SMART SM00490 255 336 3.3E-29 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 Pfam PF00271 Helicase conserved C-terminal domain 237 336 2.6E-27 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 Gene3D G3DSA:3.40.50.300 1 208 3.0E-72 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 SUPERFAMILY SSF52540 71 350 1.05E-68 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 Pfam PF03880 DbpA RNA binding domain 386 456 1.4E-22 T 16-09-2016 IPR005580 DbpA, RNA-binding domain BER92_RS12030 cb805eb3881d98c9ea0d369a6ab867e6 458 SMART SM00487 21 219 8.8E-55 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS00370 6bfcb333b87e641aa7b6a8c16350bfe2 222 PANTHER PTHR38768:SF1 1 219 3.8E-93 T 16-09-2016 BER92_RS00370 6bfcb333b87e641aa7b6a8c16350bfe2 222 Gene3D G3DSA:1.10.10.10 94 170 2.8E-31 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00370 6bfcb333b87e641aa7b6a8c16350bfe2 222 Gene3D G3DSA:1.10.10.10 6 92 7.2E-37 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00370 6bfcb333b87e641aa7b6a8c16350bfe2 222 SUPERFAMILY SSF46785 90 170 5.45E-27 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00370 6bfcb333b87e641aa7b6a8c16350bfe2 222 Hamap MF_01584 UPF0502 protein YceH [yceH]. 10 215 30.377 T 16-09-2016 IPR007432 Protein of unknown function DUF480 BER92_RS00370 6bfcb333b87e641aa7b6a8c16350bfe2 222 SUPERFAMILY SSF46785 8 87 5.85E-29 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00370 6bfcb333b87e641aa7b6a8c16350bfe2 222 Pfam PF04337 Protein of unknown function, DUF480 10 153 2.7E-54 T 16-09-2016 IPR007432 Protein of unknown function DUF480 BER92_RS00370 6bfcb333b87e641aa7b6a8c16350bfe2 222 PANTHER PTHR38768 1 219 3.8E-93 T 16-09-2016 BER92_RS14910 11de9d256b83950d9fa035e178c179c4 251 PIRSF PIRSF037208 3 250 6.7E-87 T 16-09-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic BER92_RS14910 11de9d256b83950d9fa035e178c179c4 251 Hamap MF_00689 Putative arginyl-tRNA--protein transferase [ate]. 4 245 40.36 T 16-09-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic BER92_RS14910 11de9d256b83950d9fa035e178c179c4 251 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 109 235 8.6E-34 T 16-09-2016 IPR007472 Arginine-tRNA-protein transferase, C-terminal GO:0004057|GO:0016598 BER92_RS14910 11de9d256b83950d9fa035e178c179c4 251 PANTHER PTHR21367 12 246 8.3E-83 T 16-09-2016 IPR030700 Arginine-tRNA-protein transferase BER92_RS14910 11de9d256b83950d9fa035e178c179c4 251 PANTHER PTHR21367:SF0 12 246 8.3E-83 T 16-09-2016 BER92_RS14910 11de9d256b83950d9fa035e178c179c4 251 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 19 89 3.5E-17 T 16-09-2016 IPR007471 Arginine-tRNA-protein transferase, N-terminal GO:0004057|GO:0016598 BER92_RS14910 11de9d256b83950d9fa035e178c179c4 251 SUPERFAMILY SSF55729 82 241 1.21E-21 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS08330 e4dcbae70723a42011d052ffb8a0ec97 191 Gene3D G3DSA:3.40.80.10 18 184 2.0E-31 T 16-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 BER92_RS08330 e4dcbae70723a42011d052ffb8a0ec97 191 SUPERFAMILY SSF55846 23 186 1.96E-32 T 16-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 BER92_RS08330 e4dcbae70723a42011d052ffb8a0ec97 191 SMART SM00644 20 162 1.5E-15 T 16-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 BER92_RS08330 e4dcbae70723a42011d052ffb8a0ec97 191 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 28 172 5.8E-15 T 16-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 BER92_RS08330 e4dcbae70723a42011d052ffb8a0ec97 191 PANTHER PTHR30417 4 191 2.7E-69 T 16-09-2016 BER92_RS08330 e4dcbae70723a42011d052ffb8a0ec97 191 PANTHER PTHR30417:SF4 4 191 2.7E-69 T 16-09-2016 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 SUPERFAMILY SSF82171 37 156 1.96E-35 T 16-09-2016 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 SUPERFAMILY SSF82171 320 529 1.96E-35 T 16-09-2016 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 SUPERFAMILY SSF82171 228 247 1.96E-35 T 16-09-2016 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 SUPERFAMILY SSF82171 280 286 1.96E-35 T 16-09-2016 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 SUPERFAMILY SSF53474 529 784 1.33E-61 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 Gene3D G3DSA:3.40.50.1820 529 784 2.4E-70 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 Pfam PF00326 Prolyl oligopeptidase family 589 785 9.5E-44 T 16-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 PANTHER PTHR11731 231 786 3.6E-259 T 16-09-2016 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 Gene3D G3DSA:2.140.10.30 192 513 9.0E-36 T 16-09-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 Gene3D G3DSA:2.140.10.30 20 151 9.0E-36 T 16-09-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 PANTHER PTHR11731:SF145 96 141 3.6E-259 T 16-09-2016 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 336 497 3.7E-15 T 16-09-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 PANTHER PTHR11731:SF145 231 786 3.6E-259 T 16-09-2016 BER92_RS01665 41114b0fafe33c728f353320a0cb3591 786 PANTHER PTHR11731 96 141 3.6E-259 T 16-09-2016 BER92_RS06695 9f291ec4a55b6571070886db36936b2a 217 Gene3D G3DSA:3.40.30.10 8 89 1.9E-25 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS06695 9f291ec4a55b6571070886db36936b2a 217 Gene3D G3DSA:1.20.1050.10 90 210 2.3E-28 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS06695 9f291ec4a55b6571070886db36936b2a 217 Pfam PF02798 Glutathione S-transferase, N-terminal domain 7 82 1.2E-15 T 16-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BER92_RS06695 9f291ec4a55b6571070886db36936b2a 217 SUPERFAMILY SSF47616 83 209 2.46E-24 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS06695 9f291ec4a55b6571070886db36936b2a 217 PANTHER PTHR11260 6 204 1.4E-35 T 16-09-2016 BER92_RS06695 9f291ec4a55b6571070886db36936b2a 217 Pfam PF00043 Glutathione S-transferase, C-terminal domain 128 204 1.4E-8 T 16-09-2016 IPR004046 Glutathione S-transferase, C-terminal BER92_RS06695 9f291ec4a55b6571070886db36936b2a 217 SUPERFAMILY SSF52833 6 85 9.62E-22 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS10750 2a652c0e72018fbe1e842f462a95ac2d 322 Pfam PF01609 Transposase DDE domain 135 310 8.5E-29 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10750 2a652c0e72018fbe1e842f462a95ac2d 322 PANTHER PTHR35604 2 322 3.0E-237 T 16-09-2016 BER92_RS10750 2a652c0e72018fbe1e842f462a95ac2d 322 PANTHER PTHR35604:SF2 2 322 3.0E-237 T 16-09-2016 BER92_RS10750 2a652c0e72018fbe1e842f462a95ac2d 322 Pfam PF05598 Transposase domain (DUF772) 50 122 3.6E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS05260 b3a803527328cfb6cb7ef27b6c7faf9a 147 PANTHER PTHR12934 3 147 1.7E-55 T 16-09-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 BER92_RS05260 b3a803527328cfb6cb7ef27b6c7faf9a 147 Gene3D G3DSA:3.100.10.10 34 146 1.3E-17 T 16-09-2016 BER92_RS05260 b3a803527328cfb6cb7ef27b6c7faf9a 147 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 5 147 16.962 T 16-09-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 BER92_RS05260 b3a803527328cfb6cb7ef27b6c7faf9a 147 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 30 146 1.2E-25 T 16-09-2016 IPR021131 Ribosomal protein L18e/L15P BER92_RS05260 b3a803527328cfb6cb7ef27b6c7faf9a 147 ProSitePatterns PS00475 Ribosomal protein L15 signature. 112 142 - T 16-09-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05260 b3a803527328cfb6cb7ef27b6c7faf9a 147 SUPERFAMILY SSF52080 6 146 6.28E-38 T 16-09-2016 IPR021131 Ribosomal protein L18e/L15P BER92_RS05260 b3a803527328cfb6cb7ef27b6c7faf9a 147 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 4 146 4.0E-43 T 16-09-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 SUPERFAMILY SSF53187 139 453 3.45E-105 T 16-09-2016 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 Gene3D G3DSA:3.40.630.10 135 453 2.2E-113 T 16-09-2016 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 PRINTS PR00481 Cytosol aminopeptidase signature 241 262 3.2E-42 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 PRINTS PR00481 Cytosol aminopeptidase signature 278 299 3.2E-42 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 PRINTS PR00481 Cytosol aminopeptidase signature 300 320 3.2E-42 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 PRINTS PR00481 Cytosol aminopeptidase signature 219 236 3.2E-42 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 PRINTS PR00481 Cytosol aminopeptidase signature 328 343 3.2E-42 T 16-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 304 311 - T 16-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 PANTHER PTHR11963:SF13 100 455 2.4E-146 T 16-09-2016 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 146 431 1.3E-100 T 16-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BER92_RS01400 afc85eca590b90e337dfcbc37cfd1a35 456 PANTHER PTHR11963 100 455 2.4E-146 T 16-09-2016 BER92_RS18325 d9aec6a2dedf24ca704969e478f4ff15 472 SUPERFAMILY SSF51261 176 423 1.94E-70 T 16-09-2016 IPR011055 Duplicated hybrid motif BER92_RS18325 d9aec6a2dedf24ca704969e478f4ff15 472 PANTHER PTHR21666:SF221 178 442 1.3E-50 T 16-09-2016 BER92_RS18325 d9aec6a2dedf24ca704969e478f4ff15 472 Pfam PF01551 Peptidase family M23 325 421 8.0E-33 T 16-09-2016 IPR016047 Peptidase M23 BER92_RS18325 d9aec6a2dedf24ca704969e478f4ff15 472 Pfam PF04225 Opacity-associated protein A LysM-like domain 100 168 1.5E-6 T 16-09-2016 IPR007340 Opacity-associated protein A BER92_RS18325 d9aec6a2dedf24ca704969e478f4ff15 472 PANTHER PTHR21666 178 442 1.3E-50 T 16-09-2016 BER92_RS18325 d9aec6a2dedf24ca704969e478f4ff15 472 Gene3D G3DSA:2.70.70.10 281 424 6.0E-48 T 16-09-2016 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 SUPERFAMILY SSF53822 58 312 1.58E-64 T 16-09-2016 IPR028082 Periplasmic binding protein-like I BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 Gene3D G3DSA:3.40.50.2300 58 166 1.8E-34 T 16-09-2016 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 Gene3D G3DSA:3.40.50.2300 167 325 1.5E-46 T 16-09-2016 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 SUPERFAMILY SSF47413 3 59 5.53E-15 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 Gene3D G3DSA:1.10.260.40 4 57 7.8E-22 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 PANTHER PTHR30146 2 327 1.5E-110 T 16-09-2016 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 Pfam PF13377 Periplasmic binding protein-like domain 167 324 9.3E-31 T 16-09-2016 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 SMART SM00354 2 71 1.3E-25 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 PANTHER PTHR30146:SF4 2 327 1.5E-110 T 16-09-2016 BER92_RS12545 847a92a74323c1cc7d7e1fa698ac11f8 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 2.2E-14 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 Gene3D G3DSA:3.20.20.70 2 328 9.2E-151 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 Pfam PF00490 Delta-aminolevulinic acid dehydratase 6 325 1.7E-140 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 SUPERFAMILY SSF51569 2 328 2.05E-142 T 16-09-2016 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 SMART SM01004 3 326 1.6E-238 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 245 257 - T 16-09-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 PIRSF PIRSF001415 1 329 3.0E-150 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 153 172 1.3E-57 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 300 319 1.3E-57 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 270 285 1.3E-57 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 122 136 1.3E-57 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 191 210 1.3E-57 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 245 261 1.3E-57 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS18545 31f302f7da42baba1148c9a1f42728dc 329 PANTHER PTHR11458 1 328 2.4E-187 T 16-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS00335 0f49fb036f74e3fa64d7f0862c549299 211 Hamap MF_00124 Thymidine kinase [tdk]. 1 190 33.336 T 16-09-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 BER92_RS00335 0f49fb036f74e3fa64d7f0862c549299 211 Pfam PF00265 Thymidine kinase 2 185 8.1E-48 T 16-09-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 BER92_RS00335 0f49fb036f74e3fa64d7f0862c549299 211 PANTHER PTHR11441 1 207 2.1E-75 T 16-09-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 BER92_RS00335 0f49fb036f74e3fa64d7f0862c549299 211 SUPERFAMILY SSF57716 143 196 2.71E-13 T 16-09-2016 BER92_RS00335 0f49fb036f74e3fa64d7f0862c549299 211 SUPERFAMILY SSF52540 1 142 7.61E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00335 0f49fb036f74e3fa64d7f0862c549299 211 Gene3D G3DSA:3.30.60.20 143 190 3.9E-11 T 16-09-2016 BER92_RS00335 0f49fb036f74e3fa64d7f0862c549299 211 PIRSF PIRSF035805 1 197 8.9E-51 T 16-09-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 SUPERFAMILY SSF56935 725 906 1.22E-77 T 16-09-2016 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 SUPERFAMILY SSF56935 648 694 1.22E-77 T 16-09-2016 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 SUPERFAMILY SSF56935 12 210 1.22E-77 T 16-09-2016 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 SUPERFAMILY SSF56935 280 593 1.22E-77 T 16-09-2016 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 PANTHER PTHR30069:SF7 3 839 2.3E-90 T 16-09-2016 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 PANTHER PTHR30069 3 839 2.3E-90 T 16-09-2016 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 Gene3D G3DSA:2.170.130.10 12 153 1.3E-33 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 Gene3D G3DSA:2.40.170.20 154 222 7.8E-63 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 Gene3D G3DSA:2.40.170.20 436 596 7.8E-63 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 Gene3D G3DSA:2.40.170.20 279 390 7.8E-63 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 Gene3D G3DSA:2.40.170.20 632 906 7.8E-63 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 Pfam PF00593 TonB dependent receptor 566 904 1.4E-21 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06290 0c271d01cd28222adadac1cbd1da8859 906 Pfam PF07715 TonB-dependent Receptor Plug Domain 35 150 6.9E-23 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS07365 fb362b50df05886c542fa1b51dd7c84a 295 Gene3D G3DSA:3.20.20.70 140 278 4.9E-53 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS07365 fb362b50df05886c542fa1b51dd7c84a 295 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 120 288 8.8E-53 T 16-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 BER92_RS07365 fb362b50df05886c542fa1b51dd7c84a 295 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 22 288 1.4E-82 T 16-09-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 BER92_RS07365 fb362b50df05886c542fa1b51dd7c84a 295 SUPERFAMILY SSF54675 14 117 3.3E-26 T 16-09-2016 BER92_RS07365 fb362b50df05886c542fa1b51dd7c84a 295 PIRSF PIRSF006250 15 291 3.6E-83 T 16-09-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD BER92_RS07365 fb362b50df05886c542fa1b51dd7c84a 295 SUPERFAMILY SSF51690 120 289 6.28E-53 T 16-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 BER92_RS07365 fb362b50df05886c542fa1b51dd7c84a 295 PANTHER PTHR32179 1 289 6.8E-115 T 16-09-2016 BER92_RS07365 fb362b50df05886c542fa1b51dd7c84a 295 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 30 117 5.2E-21 T 16-09-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 BER92_RS07365 fb362b50df05886c542fa1b51dd7c84a 295 Gene3D G3DSA:3.90.1170.20 11 139 6.6E-44 T 16-09-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 BER92_RS01715 8f41a992e5dc7f8d1f9fefb5d0357291 788 Gene3D G3DSA:1.20.1640.10 213 393 5.6E-16 T 16-09-2016 BER92_RS01715 8f41a992e5dc7f8d1f9fefb5d0357291 788 Gene3D G3DSA:1.20.1640.10 629 770 2.7E-10 T 16-09-2016 BER92_RS01715 8f41a992e5dc7f8d1f9fefb5d0357291 788 SUPERFAMILY SSF82866 615 770 4.58E-17 T 16-09-2016 BER92_RS01715 8f41a992e5dc7f8d1f9fefb5d0357291 788 Pfam PF03176 MMPL family 190 416 4.7E-6 T 16-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 BER92_RS01715 8f41a992e5dc7f8d1f9fefb5d0357291 788 SUPERFAMILY SSF82866 214 393 6.8E-19 T 16-09-2016 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 16-09-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 16-09-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 SUPERFAMILY SSF54913 1 112 4.45E-46 T 16-09-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 PRINTS PR00340 P-II protein signature 83 103 5.6E-44 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 PRINTS PR00340 P-II protein signature 2 17 5.6E-44 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 PRINTS PR00340 P-II protein signature 23 41 5.6E-44 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 PRINTS PR00340 P-II protein signature 52 75 5.6E-44 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 PIRSF PIRSF039144 1 112 1.1E-53 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 PANTHER PTHR30115:SF12 1 112 2.5E-66 T 16-09-2016 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 7.9E-43 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 Gene3D G3DSA:3.30.70.120 1 112 6.7E-51 T 16-09-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 PANTHER PTHR30115 1 112 2.5E-66 T 16-09-2016 BER92_RS18595 bd55f61778f7841bc07c8a4d6fb60b80 112 SMART SM00938 4 105 2.8E-67 T 16-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BER92_RS18675 d05967386a09df8bd3f9af8c1204bc54 210 Gene3D G3DSA:3.40.50.300 3 208 5.1E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18675 d05967386a09df8bd3f9af8c1204bc54 210 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 155 1.9E-18 T 16-09-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BER92_RS18675 d05967386a09df8bd3f9af8c1204bc54 210 PANTHER PTHR13696 1 208 2.5E-20 T 16-09-2016 BER92_RS18675 d05967386a09df8bd3f9af8c1204bc54 210 PIRSF PIRSF009320 1 208 4.6E-29 T 16-09-2016 BER92_RS18675 d05967386a09df8bd3f9af8c1204bc54 210 SUPERFAMILY SSF52540 1 208 1.95E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 9 123 2.4E-32 T 16-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 PIRSF PIRSF000148 7 341 3.9E-134 T 16-09-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 PANTHER PTHR10174:SF2 70 340 6.9E-85 T 16-09-2016 BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 SMART SM00859 9 124 1.4E-46 T 16-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 PANTHER PTHR10174 70 340 6.9E-85 T 16-09-2016 BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 143 324 9.1E-60 T 16-09-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 Gene3D G3DSA:3.30.360.10 146 320 4.9E-82 T 16-09-2016 BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 9 338 8.1E-136 T 16-09-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 SUPERFAMILY SSF55347 133 325 2.44E-75 T 16-09-2016 BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 SUPERFAMILY SSF51735 8 160 2.47E-50 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 Gene3D G3DSA:3.40.50.720 6 145 3.8E-63 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS08590 d5dab52d415eeb79df9308b5976533da 341 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 7 338 38.347 T 16-09-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS11600 a16f37f20a860448a27079ca55b7f46c 638 Pfam PF00920 Dehydratase family 68 599 5.9E-149 T 16-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS11600 a16f37f20a860448a27079ca55b7f46c 638 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 156 166 - T 16-09-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS11600 a16f37f20a860448a27079ca55b7f46c 638 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 4 602 2.3E-270 T 16-09-2016 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12|UniPathway: UPA00226 BER92_RS11600 a16f37f20a860448a27079ca55b7f46c 638 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 507 518 - T 16-09-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS11600 a16f37f20a860448a27079ca55b7f46c 638 PANTHER PTHR21000:SF9 3 618 0.0 T 16-09-2016 BER92_RS11600 a16f37f20a860448a27079ca55b7f46c 638 SUPERFAMILY SSF143975 3 420 2.09E-135 T 16-09-2016 BER92_RS11600 a16f37f20a860448a27079ca55b7f46c 638 PANTHER PTHR21000 3 618 0.0 T 16-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS11600 a16f37f20a860448a27079ca55b7f46c 638 SUPERFAMILY SSF52016 421 601 9.42E-52 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS16380 fc03cf42eb6d750e5708d3ab2fe7d511 284 Gene3D G3DSA:3.30.420.10 113 272 4.6E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS16380 fc03cf42eb6d750e5708d3ab2fe7d511 284 Pfam PF00665 Integrase core domain 119 233 8.3E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS16380 fc03cf42eb6d750e5708d3ab2fe7d511 284 PANTHER PTHR32552 12 282 7.6E-88 T 16-09-2016 BER92_RS16380 fc03cf42eb6d750e5708d3ab2fe7d511 284 SUPERFAMILY SSF53098 112 278 4.68E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS16380 fc03cf42eb6d750e5708d3ab2fe7d511 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS10665 fc03cf42eb6d750e5708d3ab2fe7d511 284 Gene3D G3DSA:3.30.420.10 113 272 4.6E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS10665 fc03cf42eb6d750e5708d3ab2fe7d511 284 Pfam PF00665 Integrase core domain 119 233 8.3E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS10665 fc03cf42eb6d750e5708d3ab2fe7d511 284 PANTHER PTHR32552 12 282 7.6E-88 T 16-09-2016 BER92_RS10665 fc03cf42eb6d750e5708d3ab2fe7d511 284 SUPERFAMILY SSF53098 112 278 4.68E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS10665 fc03cf42eb6d750e5708d3ab2fe7d511 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 PANTHER PTHR11669:SF0 1 369 6.0E-168 T 16-09-2016 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 353 1.4E-125 T 16-09-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 Gene3D G3DSA:3.40.50.300 231 253 7.7E-4 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 Gene3D G3DSA:3.40.50.300 15 166 5.3E-69 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 Pfam PF13177 DNA polymerase III, delta subunit 20 178 2.3E-45 T 16-09-2016 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 Gene3D G3DSA:1.10.8.60 167 230 5.7E-27 T 16-09-2016 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 SUPERFAMILY SSF48019 243 360 3.06E-28 T 16-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 359 3.0E-24 T 16-09-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.9E-5 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.9E-5 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 PANTHER PTHR11669 1 369 6.0E-168 T 16-09-2016 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 SUPERFAMILY SSF52540 34 223 2.59E-58 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 Gene3D G3DSA:1.20.272.10 254 358 2.8E-37 T 16-09-2016 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 549 671 2.4E-11 T 16-09-2016 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS14085 85363a7f1e77843040ffcf295013bc84 676 SMART SM00382 37 178 1.3E-8 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 Gene3D G3DSA:3.30.1360.10 15 64 1.8E-10 T 16-09-2016 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 PANTHER PTHR32108 9 329 1.2E-151 T 16-09-2016 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 255 326 2.0E-35 T 16-09-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 251 307 1.3E-23 T 16-09-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 SUPERFAMILY SSF56553 53 177 2.35E-42 T 16-09-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 227 1.6E-24 T 16-09-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 SUPERFAMILY SSF55257 9 53 1.96E-31 T 16-09-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 SUPERFAMILY SSF55257 178 232 1.96E-31 T 16-09-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 315 4.2E-109 T 16-09-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 PANTHER PTHR32108:SF0 9 329 1.2E-151 T 16-09-2016 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 SMART SM00662 23 233 1.2E-106 T 16-09-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 Gene3D G3DSA:2.170.120.12 65 176 1.8E-40 T 16-09-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 SUPERFAMILY SSF47789 250 323 1.83E-25 T 16-09-2016 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 154 1.7E-24 T 16-09-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 316 34.74 T 16-09-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05285 62daab23d1271f12095d2da269f76b2e 332 Gene3D G3DSA:1.10.150.20 248 324 6.9E-35 T 16-09-2016 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 293 1.9E-144 T 16-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 Gene3D G3DSA:3.30.930.10 8 217 2.1E-101 T 16-09-2016 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 301 4.9E-156 T 16-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 3.3E-67 T 16-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 3.3E-67 T 16-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 254 270 3.3E-67 T 16-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 3.3E-67 T 16-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 3.3E-67 T 16-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 3.3E-67 T 16-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 Gene3D G3DSA:1.20.58.180 219 298 1.2E-35 T 16-09-2016 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 PANTHER PTHR30075 1 301 1.2E-251 T 16-09-2016 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 294 58.741 T 16-09-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BER92_RS18930 89615d55780f5aef9645f39429287a6f 302 SUPERFAMILY SSF55681 10 293 5.14E-130 T 16-09-2016 BER92_RS03950 c6c8cbc8d98b8ef2c67f5f0dacb3ac5f 293 Pfam PF13525 Outer membrane lipoprotein 40 244 2.6E-58 T 16-09-2016 BER92_RS03950 c6c8cbc8d98b8ef2c67f5f0dacb3ac5f 293 SUPERFAMILY SSF48452 42 124 4.69E-9 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS03950 c6c8cbc8d98b8ef2c67f5f0dacb3ac5f 293 PANTHER PTHR37423 1 293 2.1E-116 T 16-09-2016 BER92_RS03950 c6c8cbc8d98b8ef2c67f5f0dacb3ac5f 293 Gene3D G3DSA:1.25.40.10 43 167 3.9E-11 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS03950 c6c8cbc8d98b8ef2c67f5f0dacb3ac5f 293 Gene3D G3DSA:1.25.40.10 203 243 3.9E-11 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS03950 c6c8cbc8d98b8ef2c67f5f0dacb3ac5f 293 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 12 258 5.0E-80 T 16-09-2016 IPR017689 Outer membrane protein assembly factor BamD BER92_RS03950 c6c8cbc8d98b8ef2c67f5f0dacb3ac5f 293 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 8 253 44.603 T 16-09-2016 IPR017689 Outer membrane protein assembly factor BamD BER92_RS15865 ca32aee36abeb589e65c27d1d511666f 79 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 6 75 1.4E-8 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15865 ca32aee36abeb589e65c27d1d511666f 79 SUPERFAMILY SSF55874 3 75 3.01E-16 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15865 ca32aee36abeb589e65c27d1d511666f 79 Gene3D G3DSA:3.30.565.10 3 75 6.2E-17 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15865 ca32aee36abeb589e65c27d1d511666f 79 PRINTS PR00344 Bacterial sensor protein C-terminal signature 8 22 7.3E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS15865 ca32aee36abeb589e65c27d1d511666f 79 PRINTS PR00344 Bacterial sensor protein C-terminal signature 61 74 7.3E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS15865 ca32aee36abeb589e65c27d1d511666f 79 PRINTS PR00344 Bacterial sensor protein C-terminal signature 37 55 7.3E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03535 efd65d4ab8becebeda5d47ecc1c7ea53 180 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 2 180 30.313 T 16-09-2016 IPR011978 Uncharacterised protein family UPF0149 BER92_RS03535 efd65d4ab8becebeda5d47ecc1c7ea53 180 PANTHER PTHR37528 1 180 1.8E-41 T 16-09-2016 BER92_RS03535 efd65d4ab8becebeda5d47ecc1c7ea53 180 Pfam PF03695 Uncharacterised protein family (UPF0149) 15 167 3.0E-29 T 16-09-2016 IPR011978 Uncharacterised protein family UPF0149 BER92_RS03535 efd65d4ab8becebeda5d47ecc1c7ea53 180 SUPERFAMILY SSF101327 4 168 3.4E-40 T 16-09-2016 IPR011978 Uncharacterised protein family UPF0149 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1150 3.1E-67 T 16-09-2016 IPR003395 RecF/RecN/SMC, N-terminal BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 SUPERFAMILY SSF52540 959 1159 2.02E-64 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 SUPERFAMILY SSF52540 1 210 2.02E-64 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 PIRSF PIRSF005719 1 1165 1.3E-264 T 16-09-2016 IPR024704 Structural maintenance of chromosomes protein BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 SUPERFAMILY SSF57997 307 499 4.9E-5 T 16-09-2016 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 SMART SM00968 521 619 2.1E-4 T 16-09-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 Gene3D G3DSA:1.20.1170.10 659 839 1.6E-4 T 16-09-2016 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1157 0.0 T 16-09-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 SUPERFAMILY SSF75553 485 668 1.7E-9 T 16-09-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 PANTHER PTHR18937 428 1160 0.0 T 16-09-2016 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 PANTHER PTHR18937 1 394 0.0 T 16-09-2016 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1159 23.131 T 16-09-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 Gene3D G3DSA:3.40.50.300 1 166 1.5E-74 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 Gene3D G3DSA:3.40.50.300 1024 1161 1.5E-74 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 SUPERFAMILY SSF57997 658 855 8.5E-5 T 16-09-2016 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 PANTHER PTHR18937:SF261 428 1160 0.0 T 16-09-2016 BER92_RS08460 a8ddccc09cb56e134cae84189e8b52b5 1167 PANTHER PTHR18937:SF261 1 394 0.0 T 16-09-2016 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 PANTHER PTHR11638 1 858 0.0 T 16-09-2016 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Gene3D G3DSA:3.40.50.300 160 341 1.2E-49 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 849 2.9E-26 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 PANTHER PTHR11638:SF18 1 858 0.0 T 16-09-2016 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 16-09-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.2E-41 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.2E-41 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.2E-41 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.2E-41 T 16-09-2016 IPR001270 ClpA/B family GO:0005524 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 763 1.0E-54 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Gene3D G3DSA:3.40.50.300 550 780 1.4E-58 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Gene3D G3DSA:1.10.1780.10 1 147 8.7E-42 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 SMART SM01086 769 858 2.6E-38 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 858 0.0 T 16-09-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Gene3D G3DSA:1.10.8.60 343 429 3.6E-37 T 16-09-2016 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 SUPERFAMILY SSF52540 159 545 1.27E-99 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 SMART SM00382 198 344 2.9E-11 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 SMART SM00382 597 770 6.5E-10 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 16-09-2016 IPR028299 ClpA/B, conserved site 2 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 SUPERFAMILY SSF52540 546 856 5.54E-82 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 336 2.4E-13 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 SUPERFAMILY SSF81923 4 156 6.08E-40 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Gene3D G3DSA:1.10.8.60 781 858 1.6E-30 T 16-09-2016 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 145 8.3E-8 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS15160 5aeb73ea42f0952ae6769521016282de 861 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 5.7E-12 T 16-09-2016 IPR004176 Clp, N-terminal GO:0019538 BER92_RS17800 053886af060316b0b7343eb2cf800d6d 180 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 104 161 1.6E-17 T 16-09-2016 IPR018637 Domain of unknown function DUF2059 BER92_RS16970 404edfbc6685f99f87d4875a292cd362 579 PANTHER PTHR40940:SF1 2 570 6.1E-109 T 16-09-2016 BER92_RS16970 404edfbc6685f99f87d4875a292cd362 579 PANTHER PTHR40940 2 570 6.1E-109 T 16-09-2016 BER92_RS16970 404edfbc6685f99f87d4875a292cd362 579 Pfam PF13584 Oxygen tolerance 30 454 4.9E-66 T 16-09-2016 IPR025738 Aerotolerance-related protein BatD BER92_RS17605 42709263ee13f92536e9048bf56d5f31 527 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 54 515 7.0E-141 T 16-09-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 BER92_RS17605 42709263ee13f92536e9048bf56d5f31 527 SUPERFAMILY SSF53756 41 521 2.3E-100 T 16-09-2016 BER92_RS17605 42709263ee13f92536e9048bf56d5f31 527 PANTHER PTHR12526:SF295 54 515 3.5E-230 T 16-09-2016 BER92_RS17605 42709263ee13f92536e9048bf56d5f31 527 Pfam PF00534 Glycosyl transferases group 1 338 477 9.2E-14 T 16-09-2016 IPR001296 Glycosyl transferase, family 1 BER92_RS17605 42709263ee13f92536e9048bf56d5f31 527 Pfam PF08323 Starch synthase catalytic domain 54 284 4.1E-63 T 16-09-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 BER92_RS17605 42709263ee13f92536e9048bf56d5f31 527 PANTHER PTHR12526 54 515 3.5E-230 T 16-09-2016 BER92_RS17605 42709263ee13f92536e9048bf56d5f31 527 Hamap MF_00484 Glycogen synthase [glgA]. 51 516 38.392 T 16-09-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 BER92_RS17605 42709263ee13f92536e9048bf56d5f31 527 Gene3D G3DSA:3.40.50.2000 301 496 6.6E-65 T 16-09-2016 BER92_RS15815 8cb7cb998dd157e336943da7931b3ddf 674 Pfam PF01432 Peptidase family M3 224 671 2.9E-141 T 16-09-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 BER92_RS15815 8cb7cb998dd157e336943da7931b3ddf 674 Gene3D G3DSA:1.10.1370.10 500 672 1.8E-134 T 16-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BER92_RS15815 8cb7cb998dd157e336943da7931b3ddf 674 Gene3D G3DSA:1.10.1370.10 140 346 1.8E-134 T 16-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BER92_RS15815 8cb7cb998dd157e336943da7931b3ddf 674 SUPERFAMILY SSF55486 1 671 1.47E-189 T 16-09-2016 BER92_RS15815 8cb7cb998dd157e336943da7931b3ddf 674 Gene3D G3DSA:1.20.1050.40 12 137 1.7E-20 T 16-09-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal BER92_RS15815 8cb7cb998dd157e336943da7931b3ddf 674 PANTHER PTHR11804:SF8 3 672 0.0 T 16-09-2016 BER92_RS15815 8cb7cb998dd157e336943da7931b3ddf 674 Gene3D G3DSA:3.40.390.10 357 499 2.0E-53 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS15815 8cb7cb998dd157e336943da7931b3ddf 674 PANTHER PTHR11804 3 672 0.0 T 16-09-2016 BER92_RS14070 2f43a0ff727348f872bf1761e8babed4 116 PRINTS PR00332 Histidine triad family signature 95 105 1.7E-19 T 16-09-2016 IPR001310 Histidine triad (HIT) protein BER92_RS14070 2f43a0ff727348f872bf1761e8babed4 116 PRINTS PR00332 Histidine triad family signature 26 44 1.7E-19 T 16-09-2016 IPR001310 Histidine triad (HIT) protein BER92_RS14070 2f43a0ff727348f872bf1761e8babed4 116 PRINTS PR00332 Histidine triad family signature 5 21 1.7E-19 T 16-09-2016 IPR001310 Histidine triad (HIT) protein BER92_RS14070 2f43a0ff727348f872bf1761e8babed4 116 Pfam PF01230 HIT domain 11 107 2.0E-23 T 16-09-2016 IPR001310 Histidine triad (HIT) protein BER92_RS14070 2f43a0ff727348f872bf1761e8babed4 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 16-09-2016 IPR019808 Histidine triad, conserved site BER92_RS14070 2f43a0ff727348f872bf1761e8babed4 116 Gene3D G3DSA:3.30.428.10 2 109 3.4E-35 T 16-09-2016 IPR011146 HIT-like domain GO:0003824 BER92_RS14070 2f43a0ff727348f872bf1761e8babed4 116 PANTHER PTHR23089 3 111 2.9E-44 T 16-09-2016 IPR001310 Histidine triad (HIT) protein BER92_RS14070 2f43a0ff727348f872bf1761e8babed4 116 PANTHER PTHR23089:SF2 3 111 2.9E-44 T 16-09-2016 BER92_RS14070 2f43a0ff727348f872bf1761e8babed4 116 SUPERFAMILY SSF54197 2 109 7.8E-34 T 16-09-2016 IPR011146 HIT-like domain GO:0003824 BER92_RS13485 d7e6a51c6bb9de721870d075d9627622 155 PANTHER PTHR22884 9 141 1.9E-33 T 16-09-2016 BER92_RS13485 d7e6a51c6bb9de721870d075d9627622 155 Pfam PF00856 SET domain 14 122 1.4E-17 T 16-09-2016 IPR001214 SET domain GO:0005515 BER92_RS13485 d7e6a51c6bb9de721870d075d9627622 155 SUPERFAMILY SSF82199 4 148 1.83E-40 T 16-09-2016 BER92_RS13485 d7e6a51c6bb9de721870d075d9627622 155 Gene3D G3DSA:2.170.270.10 4 150 7.4E-42 T 16-09-2016 BER92_RS13485 d7e6a51c6bb9de721870d075d9627622 155 SMART SM00317 3 128 3.7E-29 T 16-09-2016 IPR001214 SET domain GO:0005515 BER92_RS08945 025a4e427fb6df68c3a8916c074cafbf 539 PIRSF PIRSF028431 13 506 1.3E-217 T 16-09-2016 IPR016883 Uncharacterised conserved protein UCP028431 BER92_RS08945 025a4e427fb6df68c3a8916c074cafbf 539 Pfam PF10091 Putative glucoamylase 232 477 2.3E-89 T 16-09-2016 IPR019282 Domain of unknown function DUF2329 BER92_RS01595 0d0f08f3ca666c4cac4338729665863c 659 Gene3D G3DSA:3.30.379.10 14 163 4.2E-20 T 16-09-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like BER92_RS01595 0d0f08f3ca666c4cac4338729665863c 659 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 32 173 2.0E-17 T 16-09-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS01595 0d0f08f3ca666c4cac4338729665863c 659 PANTHER PTHR13170:SF20 124 474 1.7E-97 T 16-09-2016 BER92_RS01595 0d0f08f3ca666c4cac4338729665863c 659 Gene3D G3DSA:3.20.20.80 164 218 6.0E-4 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS01595 0d0f08f3ca666c4cac4338729665863c 659 Pfam PF07555 beta-N-acetylglucosaminidase 179 490 1.6E-102 T 16-09-2016 IPR011496 Beta-N-acetylglucosaminidase MetaCyc: PWY-7437 BER92_RS01595 0d0f08f3ca666c4cac4338729665863c 659 PANTHER PTHR13170 124 474 1.7E-97 T 16-09-2016 BER92_RS01595 0d0f08f3ca666c4cac4338729665863c 659 SUPERFAMILY SSF51445 176 505 2.63E-99 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS01595 0d0f08f3ca666c4cac4338729665863c 659 SUPERFAMILY SSF55545 31 174 1.14E-18 T 16-09-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like BER92_RS14065 2c459627ca803d55a094dc290f378569 173 PIRSF PIRSF004982 1 173 9.1E-51 T 16-09-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 BER92_RS14065 2c459627ca803d55a094dc290f378569 173 Pfam PF03843 Outer membrane lipoprotein Slp family 15 161 1.2E-44 T 16-09-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 BER92_RS14065 2c459627ca803d55a094dc290f378569 173 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 7 172 1.9E-27 T 16-09-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 BER92_RS14065 2c459627ca803d55a094dc290f378569 173 PANTHER PTHR37530 1 173 3.8E-57 T 16-09-2016 BER92_RS01170 ca3c79737a139d055232a6b019d224e1 261 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 247 8.4E-23 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS01170 ca3c79737a139d055232a6b019d224e1 261 PANTHER PTHR22748:SF7 1 258 8.0E-117 T 16-09-2016 BER92_RS01170 ca3c79737a139d055232a6b019d224e1 261 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 254 1.7E-74 T 16-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 BER92_RS01170 ca3c79737a139d055232a6b019d224e1 261 Gene3D G3DSA:3.60.10.10 1 254 8.2E-82 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS01170 ca3c79737a139d055232a6b019d224e1 261 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 254 1.1E-79 T 16-09-2016 BER92_RS01170 ca3c79737a139d055232a6b019d224e1 261 PANTHER PTHR22748 1 258 8.0E-117 T 16-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 BER92_RS01170 ca3c79737a139d055232a6b019d224e1 261 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 16-09-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 BER92_RS01170 ca3c79737a139d055232a6b019d224e1 261 SUPERFAMILY SSF56219 1 254 3.93E-76 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS01170 ca3c79737a139d055232a6b019d224e1 261 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 211 222 - T 16-09-2016 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 BER92_RS01180 c6a86278f2f66a826b6a665c7b238f15 83 Pfam PF04226 Transglycosylase associated protein 33 79 1.0E-12 T 16-09-2016 IPR007341 Transglycosylase-associated protein GO:0016021 BER92_RS01180 c6a86278f2f66a826b6a665c7b238f15 83 PANTHER PTHR33884 1 83 6.2E-25 T 16-09-2016 BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 51 348 8.5E-112 T 16-09-2016 IPR011970 Lytic murein transglycosylase BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 Pfam PF01471 Putative peptidoglycan binding domain 368 422 5.6E-10 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 PANTHER PTHR30163 19 425 7.9E-138 T 16-09-2016 IPR011757 Lytic transglycosylase MltB BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 Gene3D G3DSA:1.10.101.10 368 424 1.8E-12 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 SUPERFAMILY SSF53955 43 350 1.69E-91 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 SUPERFAMILY SSF47090 368 423 2.62E-13 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 PANTHER PTHR30163:SF2 19 425 7.9E-138 T 16-09-2016 BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 Pfam PF13406 Transglycosylase SLT domain 51 345 4.6E-104 T 16-09-2016 IPR031304 Transglycosylase SLT domain 2 BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 Gene3D G3DSA:1.10.530.10 95 152 7.4E-54 T 16-09-2016 BER92_RS14510 17b484462d2fc3d064ae842c284abafe 425 Gene3D G3DSA:1.10.530.10 234 350 7.4E-54 T 16-09-2016 BER92_RS02410 f74055e9a361c5d907da7cbec44fd3f3 366 PANTHER PTHR12526 166 326 3.2E-12 T 16-09-2016 BER92_RS02410 f74055e9a361c5d907da7cbec44fd3f3 366 SUPERFAMILY SSF53756 113 329 8.16E-20 T 16-09-2016 BER92_RS02410 f74055e9a361c5d907da7cbec44fd3f3 366 Pfam PF13692 Glycosyl transferases group 1 177 285 4.8E-8 T 16-09-2016 BER92_RS02410 f74055e9a361c5d907da7cbec44fd3f3 366 PANTHER PTHR12526:SF297 166 326 3.2E-12 T 16-09-2016 BER92_RS02410 f74055e9a361c5d907da7cbec44fd3f3 366 Gene3D G3DSA:3.40.50.2000 221 325 2.7E-8 T 16-09-2016 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 229 245 - T 16-09-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 SUPERFAMILY SSF53850 2 216 3.03E-80 T 16-09-2016 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 SUPERFAMILY SSF54782 221 303 1.14E-22 T 16-09-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 Gene3D G3DSA:3.40.190.10 109 197 1.3E-37 T 16-09-2016 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 225 293 6.2E-13 T 16-09-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 294 3.6E-100 T 16-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 210 4.1E-74 T 16-09-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 Gene3D G3DSA:3.30.160.40 221 303 7.5E-23 T 16-09-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 PANTHER PTHR11557 1 304 5.3E-138 T 16-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 295 36.701 T 16-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 Gene3D G3DSA:3.40.190.10 2 108 4.2E-42 T 16-09-2016 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 PIRSF PIRSF001438 1 304 1.4E-110 T 16-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 8.6E-42 T 16-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 8.6E-42 T 16-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 8.6E-42 T 16-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 8.6E-42 T 16-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02615 e9f7e468d4f514dd0fba5e86d6021f5f 304 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 8.6E-42 T 16-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 Pfam PF02811 PHP domain 8 184 1.5E-24 T 16-09-2016 IPR004013 PHP domain GO:0003824 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 SUPERFAMILY SSF89550 6 250 2.75E-10 T 16-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 Pfam PF01336 OB-fold nucleic acid binding domain 1028 1096 5.2E-8 T 16-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 SUPERFAMILY SSF50249 1026 1096 5.43E-5 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 304 748 6.5E-166 T 16-09-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 SMART SM00481 7 88 2.6E-16 T 16-09-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 SUPERFAMILY SSF160975 840 888 3.66E-5 T 16-09-2016 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 997 0.0 T 16-09-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 Gene3D G3DSA:3.20.20.140 6 268 7.1E-18 T 16-09-2016 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 PANTHER PTHR32294:SF0 2 1190 0.0 T 16-09-2016 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 PANTHER PTHR32294 2 1190 0.0 T 16-09-2016 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 Gene3D G3DSA:1.10.150.280 848 894 8.8E-7 T 16-09-2016 BER92_RS06360 6acf5ed78f7c6f22cbc876a6bd652bba 1194 Pfam PF14579 Helix-hairpin-helix motif 823 912 3.0E-26 T 16-09-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS08735 76b7ad7728abd257d870680b5a5e35b9 554 Gene3D G3DSA:3.40.50.880 290 543 3.7E-89 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS08735 76b7ad7728abd257d870680b5a5e35b9 554 PANTHER PTHR11550 1 543 0.0 T 16-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 BER92_RS08735 76b7ad7728abd257d870680b5a5e35b9 554 Pfam PF06418 CTP synthase N-terminus 5 265 1.1E-121 T 16-09-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 BER92_RS08735 76b7ad7728abd257d870680b5a5e35b9 554 SUPERFAMILY SSF52540 2 266 4.65E-118 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08735 76b7ad7728abd257d870680b5a5e35b9 554 Pfam PF00117 Glutamine amidotransferase class-I 303 537 8.0E-54 T 16-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 BER92_RS08735 76b7ad7728abd257d870680b5a5e35b9 554 Hamap MF_01227 CTP synthase [pyrG]. 2 543 51.026 T 16-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 BER92_RS08735 76b7ad7728abd257d870680b5a5e35b9 554 Gene3D G3DSA:3.40.50.300 4 285 8.2E-127 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08735 76b7ad7728abd257d870680b5a5e35b9 554 SUPERFAMILY SSF52317 290 542 1.2E-79 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS08735 76b7ad7728abd257d870680b5a5e35b9 554 TIGRFAM TIGR00337 PyrG: CTP synthase 4 538 4.8E-239 T 16-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 Pfam PF00633 Helix-hairpin-helix motif 115 142 3.6E-7 T 16-09-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 TIGRFAM TIGR01083 nth: endonuclease III 20 209 1.6E-86 T 16-09-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 Gene3D G3DSA:1.10.340.30 38 137 4.0E-33 T 16-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 PANTHER PTHR10359 20 235 1.7E-90 T 16-09-2016 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 Gene3D G3DSA:1.10.1670.10 138 223 3.2E-36 T 16-09-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 SUPERFAMILY SSF48150 16 224 6.44E-72 T 16-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 ProSitePatterns PS01155 Endonuclease III family signature. 117 146 - T 16-09-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 Hamap MF_00942 Endonuclease III [nth]. 16 224 37.113 T 16-09-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 SMART SM00478 53 200 1.3E-53 T 16-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 PIRSF PIRSF001435 14 226 1.1E-48 T 16-09-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 PANTHER PTHR10359:SF18 20 235 1.7E-90 T 16-09-2016 BER92_RS08295 910fce6aca483e7b7081af5b71bc14eb 236 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 49 183 4.2E-18 T 16-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 BER92_RS13450 8c43ef4afec522a10d655a6b9450d075 345 PANTHER PTHR30486 1 345 3.5E-202 T 16-09-2016 BER92_RS13450 8c43ef4afec522a10d655a6b9450d075 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 341 9.5E-158 T 16-09-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 BER92_RS13450 8c43ef4afec522a10d655a6b9450d075 345 Gene3D G3DSA:3.40.50.300 100 339 3.6E-70 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13450 8c43ef4afec522a10d655a6b9450d075 345 Pfam PF00437 Type II/IV secretion system protein 12 268 5.2E-47 T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS13450 8c43ef4afec522a10d655a6b9450d075 345 SMART SM00382 122 248 0.0063 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS13450 8c43ef4afec522a10d655a6b9450d075 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS13450 8c43ef4afec522a10d655a6b9450d075 345 PANTHER PTHR30486:SF6 1 345 3.5E-202 T 16-09-2016 BER92_RS13450 8c43ef4afec522a10d655a6b9450d075 345 SUPERFAMILY SSF52540 5 336 5.88E-71 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01245 0e3da7aa631f9aef346b5bd2206506a0 458 PANTHER PTHR33803:SF1 15 458 0.0 T 16-09-2016 BER92_RS01245 0e3da7aa631f9aef346b5bd2206506a0 458 Pfam PF01609 Transposase DDE domain 287 424 4.0E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01245 0e3da7aa631f9aef346b5bd2206506a0 458 Pfam PF05598 Transposase domain (DUF772) 62 136 2.3E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS01245 0e3da7aa631f9aef346b5bd2206506a0 458 PANTHER PTHR33803 15 458 0.0 T 16-09-2016 BER92_RS06575 23329f34726b2a548cb1794a931153b3 521 Gene3D G3DSA:1.20.1250.20 33 205 2.3E-14 T 16-09-2016 BER92_RS06575 23329f34726b2a548cb1794a931153b3 521 SUPERFAMILY SSF103473 58 214 3.4E-16 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS06575 23329f34726b2a548cb1794a931153b3 521 SUPERFAMILY SSF103473 285 513 3.4E-16 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS06575 23329f34726b2a548cb1794a931153b3 521 PANTHER PTHR11654 16 214 2.5E-110 T 16-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS06575 23329f34726b2a548cb1794a931153b3 521 PANTHER PTHR11654 281 519 2.5E-110 T 16-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS06575 23329f34726b2a548cb1794a931153b3 521 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 80 104 - T 16-09-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS06575 23329f34726b2a548cb1794a931153b3 521 Pfam PF00854 POT family 91 212 1.6E-34 T 16-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS06575 23329f34726b2a548cb1794a931153b3 521 Pfam PF00854 POT family 297 461 2.0E-38 T 16-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS06575 23329f34726b2a548cb1794a931153b3 521 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 16 490 8.5E-45 T 16-09-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 BER92_RS06210 85498487442be1aa7c6cb89edf2d447b 81 SUPERFAMILY SSF54292 5 80 2.88E-20 T 16-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BER92_RS06210 85498487442be1aa7c6cb89edf2d447b 81 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 80 3.5E-23 T 16-09-2016 BER92_RS06210 85498487442be1aa7c6cb89edf2d447b 81 Gene3D G3DSA:3.10.20.30 6 73 9.0E-6 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS04105 fe4a1a2ed81237cf0afd4eed35df4dfa 92 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 4 92 21.845 T 16-09-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 BER92_RS04105 fe4a1a2ed81237cf0afd4eed35df4dfa 92 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 26 90 1.8E-13 T 16-09-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 BER92_RS04105 fe4a1a2ed81237cf0afd4eed35df4dfa 92 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 10 90 2.3E-30 T 16-09-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 BER92_RS11030 b95db29cc77eca13f89a3894e97b9a10 70 PANTHER PTHR34984:SF1 1 62 1.2E-29 T 16-09-2016 BER92_RS11030 b95db29cc77eca13f89a3894e97b9a10 70 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 55 7.1E-27 T 16-09-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 BER92_RS11030 b95db29cc77eca13f89a3894e97b9a10 70 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 2.0E-19 T 16-09-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 BER92_RS11030 b95db29cc77eca13f89a3894e97b9a10 70 PANTHER PTHR34984 1 62 1.2E-29 T 16-09-2016 BER92_RS11030 b95db29cc77eca13f89a3894e97b9a10 70 Pfam PF02599 Global regulator protein family 1 52 5.7E-26 T 16-09-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 BER92_RS11030 b95db29cc77eca13f89a3894e97b9a10 70 SUPERFAMILY SSF117130 1 53 1.02E-19 T 16-09-2016 BER92_RS11030 b95db29cc77eca13f89a3894e97b9a10 70 Hamap MF_00167 Carbon storage regulator [csrA]. 1 70 21.21 T 16-09-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 PANTHER PTHR23500:SF22 7 474 2.3E-250 T 16-09-2016 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 12 473 1.2E-109 T 16-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 Pfam PF00083 Sugar (and other) transporter 24 474 6.8E-111 T 16-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 ProSitePatterns PS00216 Sugar transport proteins signature 1. 76 93 - T 16-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 Gene3D G3DSA:1.20.1250.20 269 472 2.8E-21 T 16-09-2016 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 Gene3D G3DSA:1.20.1250.20 26 212 1.8E-26 T 16-09-2016 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 SUPERFAMILY SSF103473 15 474 5.1E-71 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 PANTHER PTHR23500 7 474 2.3E-250 T 16-09-2016 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 ProSitePatterns PS00216 Sugar transport proteins signature 1. 325 342 - T 16-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 PRINTS PR00171 Sugar transporter signature 401 413 5.2E-25 T 16-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 PRINTS PR00171 Sugar transporter signature 30 40 5.2E-25 T 16-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 PRINTS PR00171 Sugar transporter signature 378 399 5.2E-25 T 16-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 PRINTS PR00171 Sugar transporter signature 281 291 5.2E-25 T 16-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 PRINTS PR00171 Sugar transporter signature 113 132 5.2E-25 T 16-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 BER92_RS10860 45ace9a483f18bcd8c556b0ed9a3afd4 475 ProSitePatterns PS00217 Sugar transport proteins signature 2. 118 143 - T 16-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 PANTHER PTHR30146 5 333 2.5E-173 T 16-09-2016 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 Gene3D G3DSA:1.10.260.40 6 58 2.0E-22 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 SUPERFAMILY SSF47413 5 63 3.45E-16 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 SUPERFAMILY SSF53822 64 335 1.2E-68 T 16-09-2016 IPR028082 Periplasmic binding protein-like I BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 PANTHER PTHR30146:SF55 5 333 2.5E-173 T 16-09-2016 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 Gene3D G3DSA:3.40.50.2300 176 312 4.5E-48 T 16-09-2016 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 Gene3D G3DSA:3.40.50.2300 59 175 9.2E-37 T 16-09-2016 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 Pfam PF13377 Periplasmic binding protein-like domain 172 333 3.3E-37 T 16-09-2016 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 2.4E-5 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 2.4E-5 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 51 2.4E-15 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS08935 de6cae16a41cc49c9ff36c0fd014f275 340 SMART SM00354 5 75 5.6E-25 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS04975 4750638508d48590475f033a94c9f511 157 PANTHER PTHR30411 5 157 6.9E-46 T 16-09-2016 BER92_RS04975 4750638508d48590475f033a94c9f511 157 PIRSF PIRSF006181 1 157 3.8E-38 T 16-09-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BER92_RS04975 4750638508d48590475f033a94c9f511 157 Gene3D G3DSA:3.90.960.10 3 157 5.8E-43 T 16-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BER92_RS04975 4750638508d48590475f033a94c9f511 157 PANTHER PTHR30411:SF0 5 157 6.9E-46 T 16-09-2016 BER92_RS04975 4750638508d48590475f033a94c9f511 157 SUPERFAMILY SSF55826 5 155 2.49E-33 T 16-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BER92_RS04975 4750638508d48590475f033a94c9f511 157 Pfam PF04073 Aminoacyl-tRNA editing domain 35 140 3.4E-17 T 16-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BER92_RS04975 4750638508d48590475f033a94c9f511 157 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 5 156 2.1E-46 T 16-09-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 SUPERFAMILY SSF51230 2 92 3.75E-23 T 16-09-2016 IPR011053 Single hybrid motif BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 PANTHER PTHR23151 223 469 2.8E-219 T 16-09-2016 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 SUPERFAMILY SSF47005 161 202 1.57E-10 T 16-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 PANTHER PTHR23151:SF68 161 205 2.8E-219 T 16-09-2016 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 Gene3D G3DSA:4.10.320.10 161 208 5.8E-17 T 16-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 Gene3D G3DSA:3.30.559.10 231 469 6.7E-85 T 16-09-2016 IPR023213 Chloramphenicol acetyltransferase-like domain BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 PANTHER PTHR23151:SF68 1 133 2.8E-219 T 16-09-2016 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 SUPERFAMILY SSF52777 229 469 2.31E-83 T 16-09-2016 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 Pfam PF00364 Biotin-requiring enzyme 6 74 7.6E-21 T 16-09-2016 IPR000089 Biotin/lipoyl attachment BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 16-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 PANTHER PTHR23151:SF68 223 469 2.8E-219 T 16-09-2016 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 240 468 8.3E-80 T 16-09-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 PANTHER PTHR23151 161 205 2.8E-219 T 16-09-2016 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 Pfam PF02817 e3 binding domain 165 199 2.1E-13 T 16-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 Gene3D G3DSA:2.40.50.100 3 78 1.3E-21 T 16-09-2016 BER92_RS15945 f794c765caf40d33130f41cf596dd260 469 PANTHER PTHR23151 1 133 2.8E-219 T 16-09-2016 BER92_RS15695 c46281154a3c190f0d74325af585e019 399 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS15695 c46281154a3c190f0d74325af585e019 399 SUPERFAMILY SSF53383 20 394 1.28E-125 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS15695 c46281154a3c190f0d74325af585e019 399 Gene3D G3DSA:3.40.640.10 16 259 1.4E-98 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS15695 c46281154a3c190f0d74325af585e019 399 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 18 394 5.3E-161 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS15695 c46281154a3c190f0d74325af585e019 399 PANTHER PTHR11808 2 398 1.9E-215 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS15695 c46281154a3c190f0d74325af585e019 399 PIRSF PIRSF001434 3 397 1.9E-150 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS15695 c46281154a3c190f0d74325af585e019 399 Gene3D G3DSA:3.90.1150.10 260 395 6.2E-56 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS15695 c46281154a3c190f0d74325af585e019 399 PANTHER PTHR11808:SF15 2 398 1.9E-215 T 16-09-2016 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 Pfam PF00425 chorismate binding enzyme 223 476 6.6E-97 T 16-09-2016 IPR015890 Chorismate-utilising enzyme, C-terminal BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 170 2.5E-29 T 16-09-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 SUPERFAMILY SSF56322 16 484 2.22E-154 T 16-09-2016 IPR005801 ADC synthase GO:0009058 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 PANTHER PTHR11236:SF9 5 489 1.8E-230 T 16-09-2016 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 27 484 4.8E-165 T 16-09-2016 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 PRINTS PR00095 Anthranilate synthase component I signature 433 447 1.4E-22 T 16-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 PRINTS PR00095 Anthranilate synthase component I signature 338 351 1.4E-22 T 16-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 PRINTS PR00095 Anthranilate synthase component I signature 324 337 1.4E-22 T 16-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 PRINTS PR00095 Anthranilate synthase component I signature 418 432 1.4E-22 T 16-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 PANTHER PTHR11236 5 489 1.8E-230 T 16-09-2016 BER92_RS18040 83e67880dff6f651a573e78e463b76bf 491 Gene3D G3DSA:3.60.120.10 14 487 4.8E-172 T 16-09-2016 IPR005801 ADC synthase GO:0009058 BER92_RS00330 16a54ecd3b25bab4d18ced7e8313ce08 533 Gene3D G3DSA:2.70.98.10 42 414 2.8E-161 T 16-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 BER92_RS00330 16a54ecd3b25bab4d18ced7e8313ce08 533 PANTHER PTHR30504 1 533 0.0 T 16-09-2016 BER92_RS00330 16a54ecd3b25bab4d18ced7e8313ce08 533 SUPERFAMILY SSF74650 43 412 2.07E-151 T 16-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 BER92_RS00330 16a54ecd3b25bab4d18ced7e8313ce08 533 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 43 522 8.7E-191 T 16-09-2016 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 UniPathway: UPA00637 BER92_RS00330 16a54ecd3b25bab4d18ced7e8313ce08 533 Gene3D G3DSA:2.60.40.10 415 532 2.1E-36 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS00330 16a54ecd3b25bab4d18ced7e8313ce08 533 SUPERFAMILY SSF81296 413 525 9.8E-28 T 16-09-2016 IPR014756 Immunoglobulin E-set BER92_RS00330 16a54ecd3b25bab4d18ced7e8313ce08 533 Hamap MF_01068 Glucans biosynthesis protein D [mdoD]. 1 532 61.095 T 16-09-2016 IPR023724 Glucan biosynthesis, MdoD UniPathway: UPA00637 BER92_RS00330 16a54ecd3b25bab4d18ced7e8313ce08 533 PANTHER PTHR30504:SF3 1 533 0.0 T 16-09-2016 BER92_RS00330 16a54ecd3b25bab4d18ced7e8313ce08 533 PIRSF PIRSF006281 1 526 9.9E-203 T 16-09-2016 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D UniPathway: UPA00637 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 Gene3D G3DSA:1.10.10.10 19 74 1.4E-8 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 PANTHER PTHR30363:SF1 18 274 2.1E-114 T 16-09-2016 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 PANTHER PTHR30363 18 274 2.1E-114 T 16-09-2016 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 SMART SM01134 89 250 2.8E-70 T 16-09-2016 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 Gene3D G3DSA:3.30.750.70 93 170 5.0E-13 T 16-09-2016 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 SUPERFAMILY SSF100950 91 250 1.02E-25 T 16-09-2016 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 SUPERFAMILY SSF46785 20 93 1.06E-12 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 ProSitePatterns PS00894 DeoR-type HTH domain signature. 23 57 - T 16-09-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 SMART SM00420 23 75 1.3E-14 T 16-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 Pfam PF08220 DeoR-like helix-turn-helix domain 23 78 1.4E-16 T 16-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 55 73 1.0E-7 T 16-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 55 1.0E-7 T 16-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BER92_RS17740 64379cdd80e73dd36750689a4a75f2e1 275 Pfam PF00455 DeoR C terminal sensor domain 91 249 9.2E-51 T 16-09-2016 IPR014036 DeoR C-terminal sensor domain BER92_RS14855 93492c22d48d80621028abeb406f413c 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 3.1E-37 T 16-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 3.1E-37 T 16-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 3.1E-37 T 16-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 Pfam PF01016 Ribosomal L27 protein 2 82 9.1E-38 T 16-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 5.1E-37 T 16-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 16-09-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 2.0E-18 T 16-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 PANTHER PTHR15893 1 86 3.8E-47 T 16-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.894 T 16-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 SUPERFAMILY SSF110324 2 82 1.99E-33 T 16-09-2016 BER92_RS14855 93492c22d48d80621028abeb406f413c 86 Gene3D G3DSA:2.40.50.100 20 82 1.1E-29 T 16-09-2016 BER92_RS05065 5abb1e792b2ce0d5968cae6cd6073411 194 Pfam PF01195 Peptidyl-tRNA hydrolase 6 187 2.9E-50 T 16-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BER92_RS05065 5abb1e792b2ce0d5968cae6cd6073411 194 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 6 189 2.4E-56 T 16-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BER92_RS05065 5abb1e792b2ce0d5968cae6cd6073411 194 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 16-09-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 BER92_RS05065 5abb1e792b2ce0d5968cae6cd6073411 194 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 182 33.215 T 16-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BER92_RS05065 5abb1e792b2ce0d5968cae6cd6073411 194 SUPERFAMILY SSF53178 6 190 1.44E-63 T 16-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BER92_RS05065 5abb1e792b2ce0d5968cae6cd6073411 194 PANTHER PTHR17224 6 190 1.4E-71 T 16-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BER92_RS05065 5abb1e792b2ce0d5968cae6cd6073411 194 Gene3D G3DSA:3.40.50.1470 6 191 1.1E-63 T 16-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BER92_RS01895 0a4af9c68aeb4dc4a7cd54b05d66e77b 192 Gene3D G3DSA:3.40.50.150 36 152 1.8E-16 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS01895 0a4af9c68aeb4dc4a7cd54b05d66e77b 192 SUPERFAMILY SSF53335 27 152 5.29E-21 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS01895 0a4af9c68aeb4dc4a7cd54b05d66e77b 192 PANTHER PTHR11727 31 136 3.1E-28 T 16-09-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm BER92_RS01895 0a4af9c68aeb4dc4a7cd54b05d66e77b 192 PANTHER PTHR11727:SF14 31 136 3.1E-28 T 16-09-2016 BER92_RS01895 0a4af9c68aeb4dc4a7cd54b05d66e77b 192 Pfam PF13649 Methyltransferase domain 45 142 1.8E-10 T 16-09-2016 BER92_RS08520 ffad15e0ed81eaa5a372aa69b9b42ca1 513 Gene3D G3DSA:1.10.275.10 5 197 1.9E-68 T 16-09-2016 IPR024083 Fumarase/histidase, N-terminal BER92_RS08520 ffad15e0ed81eaa5a372aa69b9b42ca1 513 PANTHER PTHR10362:SF7 5 504 1.0E-233 T 16-09-2016 BER92_RS08520 ffad15e0ed81eaa5a372aa69b9b42ca1 513 Gene3D G3DSA:1.20.200.10 198 503 3.0E-123 T 16-09-2016 BER92_RS08520 ffad15e0ed81eaa5a372aa69b9b42ca1 513 SUPERFAMILY SSF48557 5 501 1.57E-185 T 16-09-2016 IPR008948 L-Aspartase-like GO:0003824 BER92_RS08520 ffad15e0ed81eaa5a372aa69b9b42ca1 513 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 4 504 45.058 T 16-09-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS08520 ffad15e0ed81eaa5a372aa69b9b42ca1 513 Pfam PF00221 Aromatic amino acid lyase 13 470 8.7E-181 T 16-09-2016 IPR001106 Aromatic amino acid lyase BER92_RS08520 ffad15e0ed81eaa5a372aa69b9b42ca1 513 PANTHER PTHR10362 5 504 1.0E-233 T 16-09-2016 BER92_RS08520 ffad15e0ed81eaa5a372aa69b9b42ca1 513 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 503 2.1E-203 T 16-09-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS08520 ffad15e0ed81eaa5a372aa69b9b42ca1 513 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 16-09-2016 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 BER92_RS10710 952ce5caff5890a989ae144af4ffda83 421 PANTHER PTHR30454 4 420 1.4E-156 T 16-09-2016 BER92_RS10710 952ce5caff5890a989ae144af4ffda83 421 Pfam PF04551 GcpE protein 22 409 1.6E-107 T 16-09-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 BER92_RS10710 952ce5caff5890a989ae144af4ffda83 421 PIRSF PIRSF004640 12 419 1.5E-124 T 16-09-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 BER92_RS10710 952ce5caff5890a989ae144af4ffda83 421 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 17 411 28.86 T 16-09-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 BER92_RS10710 952ce5caff5890a989ae144af4ffda83 421 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 19 409 2.5E-116 T 16-09-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 BER92_RS03700 91b73e14d4871b12be97f6afc2c0d59a 576 PANTHER PTHR38038:SF1 1 574 2.4E-195 T 16-09-2016 BER92_RS03700 91b73e14d4871b12be97f6afc2c0d59a 576 Gene3D G3DSA:3.40.50.2300 488 557 7.3E-36 T 16-09-2016 BER92_RS03700 91b73e14d4871b12be97f6afc2c0d59a 576 Gene3D G3DSA:3.40.50.2300 249 357 7.3E-36 T 16-09-2016 BER92_RS03700 91b73e14d4871b12be97f6afc2c0d59a 576 Pfam PF04348 LppC putative lipoprotein 43 567 1.2E-117 T 16-09-2016 IPR007443 Penicillin-binding protein activator LpoA BER92_RS03700 91b73e14d4871b12be97f6afc2c0d59a 576 SUPERFAMILY SSF53822 250 572 1.18E-62 T 16-09-2016 IPR028082 Periplasmic binding protein-like I BER92_RS03700 91b73e14d4871b12be97f6afc2c0d59a 576 Gene3D G3DSA:3.40.50.2300 358 487 4.2E-24 T 16-09-2016 BER92_RS03700 91b73e14d4871b12be97f6afc2c0d59a 576 PANTHER PTHR38038 1 574 2.4E-195 T 16-09-2016 BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 200 206 - T 16-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 PANTHER PTHR18895 1 308 8.9E-169 T 16-09-2016 BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 SUPERFAMILY SSF53335 12 289 2.2E-48 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 Gene3D G3DSA:1.10.8.10 11 101 9.1E-8 T 16-09-2016 BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 Pfam PF05175 Methyltransferase small domain 131 213 8.0E-15 T 16-09-2016 IPR007848 Methyltransferase small domain GO:0008168 BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 11 286 3.6E-68 T 16-09-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 2 296 48.484 T 16-09-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 Gene3D G3DSA:3.40.50.150 105 282 2.6E-51 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 9 290 1.5E-115 T 16-09-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 PANTHER PTHR18895:SF66 1 308 8.9E-169 T 16-09-2016 BER92_RS08570 c01480c1ce245c73871e54d007339d39 308 PIRSF PIRSF037167 1 303 5.0E-123 T 16-09-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 BER92_RS18420 9de822f0422870e5063b7a2301934306 225 Pfam PF04002 RadC-like JAB domain 104 222 9.6E-42 T 16-09-2016 IPR025657 RadC-like JAB domain BER92_RS18420 9de822f0422870e5063b7a2301934306 225 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 2.3E-67 T 16-09-2016 IPR001405 RadC protein BER92_RS18420 9de822f0422870e5063b7a2301934306 225 PANTHER PTHR30471 1 224 4.1E-130 T 16-09-2016 BER92_RS18420 9de822f0422870e5063b7a2301934306 225 SUPERFAMILY SSF47781 16 87 4.22E-5 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS18420 9de822f0422870e5063b7a2301934306 225 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 16-09-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site BER92_RS18420 9de822f0422870e5063b7a2301934306 225 Gene3D G3DSA:3.40.140.10 101 224 2.0E-46 T 16-09-2016 BER92_RS18420 9de822f0422870e5063b7a2301934306 225 PANTHER PTHR30471:SF5 1 224 4.1E-130 T 16-09-2016 BER92_RS09855 7263f058dfa343f4190f664135155a08 498 PANTHER PTHR35565:SF3 1 498 7.3E-260 T 16-09-2016 BER92_RS09855 7263f058dfa343f4190f664135155a08 498 PANTHER PTHR35565 1 498 7.3E-260 T 16-09-2016 BER92_RS09855 7263f058dfa343f4190f664135155a08 498 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 20 492 1.3E-220 T 16-09-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath BER92_RS09855 7263f058dfa343f4190f664135155a08 498 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 492 6.7E-197 T 16-09-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath BER92_RS13760 cee726180312cb0ffd3b271ad0ea79be 353 Pfam PF00704 Glycosyl hydrolases family 18 46 338 5.2E-29 T 16-09-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 BER92_RS13760 cee726180312cb0ffd3b271ad0ea79be 353 SUPERFAMILY SSF51445 45 246 1.1E-44 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS13760 cee726180312cb0ffd3b271ad0ea79be 353 SUPERFAMILY SSF51445 312 344 1.1E-44 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS13760 cee726180312cb0ffd3b271ad0ea79be 353 SMART SM00636 26 340 2.7E-23 T 16-09-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 BER92_RS13760 cee726180312cb0ffd3b271ad0ea79be 353 Gene3D G3DSA:3.20.20.80 44 248 3.7E-37 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS13760 cee726180312cb0ffd3b271ad0ea79be 353 Gene3D G3DSA:3.20.20.80 316 351 3.7E-37 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS13760 cee726180312cb0ffd3b271ad0ea79be 353 PANTHER PTHR11177:SF6 1 343 8.6E-30 T 16-09-2016 BER92_RS13760 cee726180312cb0ffd3b271ad0ea79be 353 PANTHER PTHR11177 1 343 8.6E-30 T 16-09-2016 BER92_RS02175 21ce4d8171c7c702ca1698f86fa9b096 154 Pfam PF09900 Predicted membrane protein (DUF2127) 15 149 5.2E-36 T 16-09-2016 IPR021125 Protein of unknown function DUF2127 BER92_RS00595 d60dfe33e800d7d123223f77187f16d4 312 Pfam PF02558 Ketopantoate reductase PanE/ApbA 4 155 3.9E-38 T 16-09-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 BER92_RS00595 d60dfe33e800d7d123223f77187f16d4 312 Gene3D G3DSA:3.40.50.720 1 182 1.9E-53 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00595 d60dfe33e800d7d123223f77187f16d4 312 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 184 297 1.6E-16 T 16-09-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 BER92_RS00595 d60dfe33e800d7d123223f77187f16d4 312 SUPERFAMILY SSF51735 1 137 1.53E-11 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00595 d60dfe33e800d7d123223f77187f16d4 312 Gene3D G3DSA:1.10.1040.10 184 305 9.9E-21 T 16-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BER92_RS00595 d60dfe33e800d7d123223f77187f16d4 312 PANTHER PTHR21708 1 312 1.4E-141 T 16-09-2016 BER92_RS00595 d60dfe33e800d7d123223f77187f16d4 312 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 3 303 3.7E-59 T 16-09-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 BER92_RS00595 d60dfe33e800d7d123223f77187f16d4 312 SUPERFAMILY SSF48179 184 307 1.5E-22 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS00595 d60dfe33e800d7d123223f77187f16d4 312 PANTHER PTHR21708:SF26 1 312 1.4E-141 T 16-09-2016 BER92_RS03090 6c6d8cf0d4fee756493caf4f9338935d 215 Gene3D G3DSA:3.40.50.1110 8 203 1.2E-25 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS03090 6c6d8cf0d4fee756493caf4f9338935d 215 SUPERFAMILY SSF52266 7 202 4.43E-29 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS03090 6c6d8cf0d4fee756493caf4f9338935d 215 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 13 193 4.7E-25 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 SUPERFAMILY SSF69279 222 357 2.38E-16 T 16-09-2016 BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 SUPERFAMILY SSF69279 401 417 2.38E-16 T 16-09-2016 BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 36 535 3.9E-72 T 16-09-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 718 879 3.1E-33 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 23 355 2.5E-57 T 16-09-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 PANTHER PTHR32305 17 539 9.6E-54 T 16-09-2016 BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 Pfam PF05954 Phage late control gene D protein (GPD) 45 355 6.2E-78 T 16-09-2016 BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 SUPERFAMILY SSF69279 23 214 7.37E-48 T 16-09-2016 BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 Gene3D G3DSA:3.55.50.10 113 218 1.5E-27 T 16-09-2016 BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 584 683 3.0E-27 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 Gene3D G3DSA:2.40.50.230 436 531 4.6E-29 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 SUPERFAMILY SSF69255 429 531 7.59E-23 T 16-09-2016 BER92_RS09820 6c229de12ccb60c0aa65bb0ac339b583 913 PANTHER PTHR32305:SF7 17 539 9.6E-54 T 16-09-2016 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 SUPERFAMILY SSF53623 6 283 1.95E-84 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 Gene3D G3DSA:3.90.190.20 286 419 2.8E-32 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 PANTHER PTHR11136:SF0 8 420 3.3E-116 T 16-09-2016 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 PANTHER PTHR11136 8 420 3.3E-116 T 16-09-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 Gene3D G3DSA:3.40.1190.10 5 284 8.2E-89 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 Pfam PF02875 Mur ligase family, glutamate ligase domain 284 347 2.2E-5 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 PIRSF PIRSF001563 1 423 2.9E-100 T 16-09-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 TIGRFAM TIGR01499 folC: bifunctional protein FolC 26 416 2.2E-95 T 16-09-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 Pfam PF08245 Mur ligase middle domain 48 262 2.5E-10 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS15375 168fa685fcbcd0812d3e0a38bccf0d32 425 SUPERFAMILY SSF53244 286 419 2.01E-27 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS15425 9840ab4b57d69200993222b5d3d192a4 514 SMART SM00220 205 495 4.3E-8 T 16-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BER92_RS15425 9840ab4b57d69200993222b5d3d192a4 514 SUPERFAMILY SSF56112 209 501 3.33E-20 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS15425 9840ab4b57d69200993222b5d3d192a4 514 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 211 242 - T 16-09-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 BER92_RS15425 9840ab4b57d69200993222b5d3d192a4 514 Gene3D G3DSA:1.10.510.10 346 498 3.6E-15 T 16-09-2016 BER92_RS15425 9840ab4b57d69200993222b5d3d192a4 514 Pfam PF00069 Protein kinase domain 270 494 2.1E-12 T 16-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 PANTHER PTHR10030:SF28 31 446 2.4E-109 T 16-09-2016 BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 Pfam PF00754 F5/8 type C domain 341 435 9.4E-11 T 16-09-2016 IPR000421 Coagulation factor 5/8 C-terminal domain BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 Gene3D G3DSA:2.60.120.260 339 448 1.5E-12 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 SUPERFAMILY SSF51445 24 321 2.63E-82 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 PRINTS PR00741 Glycosyl hydrolase family 29 signature 278 299 1.3E-8 T 16-09-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 PRINTS PR00741 Glycosyl hydrolase family 29 signature 90 106 1.3E-8 T 16-09-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 PRINTS PR00741 Glycosyl hydrolase family 29 signature 138 157 1.3E-8 T 16-09-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 PANTHER PTHR10030 31 446 2.4E-109 T 16-09-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 SUPERFAMILY SSF49785 339 447 2.47E-13 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 Gene3D G3DSA:3.20.20.80 21 322 2.8E-89 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 Pfam PF01120 Alpha-L-fucosidase 65 319 6.9E-41 T 16-09-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 BER92_RS04235 7394e82ed105082249b94b22e48f09a5 453 SMART SM00812 28 356 1.9E-15 T 16-09-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 BER92_RS04220 cb96b8b1005a7cf19e2fb26ce1e0f162 494 Gene3D G3DSA:3.80.10.10 68 327 3.8E-33 T 16-09-2016 IPR032675 Leucine-rich repeat domain, L domain-like BER92_RS04220 cb96b8b1005a7cf19e2fb26ce1e0f162 494 PANTHER PTHR23155 73 286 1.1E-34 T 16-09-2016 BER92_RS04220 cb96b8b1005a7cf19e2fb26ce1e0f162 494 SMART SM00369 114 137 0.18 T 16-09-2016 IPR003591 Leucine-rich repeat, typical subtype BER92_RS04220 cb96b8b1005a7cf19e2fb26ce1e0f162 494 SMART SM00369 192 215 100.0 T 16-09-2016 IPR003591 Leucine-rich repeat, typical subtype BER92_RS04220 cb96b8b1005a7cf19e2fb26ce1e0f162 494 SMART SM00369 169 191 34.0 T 16-09-2016 IPR003591 Leucine-rich repeat, typical subtype BER92_RS04220 cb96b8b1005a7cf19e2fb26ce1e0f162 494 SMART SM00369 263 287 170.0 T 16-09-2016 IPR003591 Leucine-rich repeat, typical subtype BER92_RS04220 cb96b8b1005a7cf19e2fb26ce1e0f162 494 SUPERFAMILY SSF52058 67 291 4.08E-34 T 16-09-2016 IPR032675 Leucine-rich repeat domain, L domain-like BER92_RS04220 cb96b8b1005a7cf19e2fb26ce1e0f162 494 Pfam PF00560 Leucine Rich Repeat 116 136 1.6 T 16-09-2016 IPR001611 Leucine-rich repeat GO:0005515 BER92_RS04220 cb96b8b1005a7cf19e2fb26ce1e0f162 494 Pfam PF00560 Leucine Rich Repeat 265 284 1.6 T 16-09-2016 IPR001611 Leucine-rich repeat GO:0005515 BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 ProSitePatterns PS00455 Putative AMP-binding domain signature. 214 225 - T 16-09-2016 IPR020845 AMP-binding, conserved site BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 PANTHER PTHR24096 12 156 4.6E-180 T 16-09-2016 BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 PANTHER PTHR24096 179 559 4.6E-180 T 16-09-2016 BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 Pfam PF00501 AMP-binding enzyme 32 466 2.4E-116 T 16-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 Pfam PF13193 AMP-binding enzyme C-terminal domain 475 549 1.8E-18 T 16-09-2016 IPR025110 AMP-binding enzyme C-terminal domain BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 Gene3D G3DSA:3.30.300.30 461 559 1.5E-29 T 16-09-2016 BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 SUPERFAMILY SSF56801 24 560 3.92E-153 T 16-09-2016 BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 Gene3D G3DSA:3.40.50.980 220 384 5.2E-44 T 16-09-2016 BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 Gene3D G3DSA:2.30.38.10 385 457 3.9E-29 T 16-09-2016 BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 Gene3D G3DSA:3.40.50.980 188 219 5.6E-39 T 16-09-2016 BER92_RS09425 ad9c2f5381ba7bb980504138ac73f2a9 561 Gene3D G3DSA:3.40.50.980 26 155 5.6E-39 T 16-09-2016 BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 PANTHER PTHR11360 93 312 1.6E-148 T 16-09-2016 BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 Pfam PF07690 Major Facilitator Superfamily 40 440 1.2E-33 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 PANTHER PTHR11360:SF135 333 522 1.6E-148 T 16-09-2016 BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 SUPERFAMILY SSF103473 27 488 1.31E-42 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 Gene3D G3DSA:1.20.1250.20 274 489 2.2E-13 T 16-09-2016 BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 Gene3D G3DSA:1.20.1250.20 30 245 1.9E-15 T 16-09-2016 BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 PANTHER PTHR11360:SF135 93 312 1.6E-148 T 16-09-2016 BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 PANTHER PTHR11360:SF135 26 69 1.6E-148 T 16-09-2016 BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 PANTHER PTHR11360 26 69 1.6E-148 T 16-09-2016 BER92_RS07470 ff2b28d824d3728a181493d1399ac27e 559 PANTHER PTHR11360 333 522 1.6E-148 T 16-09-2016 BER92_RS00785 43a67f44686684df54e8e413ee686b4f 338 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 6 336 8.6E-162 T 16-09-2016 IPR006441 Bacteriophage P2, GpN, major capsid GO:0019028 BER92_RS00785 43a67f44686684df54e8e413ee686b4f 338 Pfam PF05125 Phage major capsid protein, P2 family 8 334 7.6E-141 T 16-09-2016 IPR006441 Bacteriophage P2, GpN, major capsid GO:0019028 BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 SUPERFAMILY SSF53795 137 306 1.13E-31 T 16-09-2016 BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 PANTHER PTHR30305 1 316 2.2E-121 T 16-09-2016 BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 Gene3D G3DSA:3.40.50.300 138 313 3.2E-56 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 PANTHER PTHR30305:SF1 1 316 2.2E-121 T 16-09-2016 BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 Pfam PF07475 HPr Serine kinase C-terminal domain 135 306 1.8E-56 T 16-09-2016 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 Gene3D G3DSA:3.40.1390.20 10 135 1.3E-28 T 16-09-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 4 314 36.029 T 16-09-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 SUPERFAMILY SSF75138 10 136 9.29E-31 T 16-09-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 6 309 1.1E-100 T 16-09-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 BER92_RS13685 7fa638483cd7490fee8caec400322aee 316 Pfam PF02603 HPr Serine kinase N terminus 5 132 1.7E-23 T 16-09-2016 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 BER92_RS06845 3487a23ef1954746c671c7be9056aeb6 424 Pfam PF13387 Domain of unknown function (DUF4105) 58 190 2.5E-15 T 16-09-2016 IPR025178 Domain of unknown function DUF4105 BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 Gene3D G3DSA:2.120.10.30 67 100 1.4E-59 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 Gene3D G3DSA:2.120.10.30 19 25 1.4E-59 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 Gene3D G3DSA:2.120.10.30 134 444 1.4E-59 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 SUPERFAMILY SSF50952 133 444 3.53E-33 T 16-09-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 SUPERFAMILY SSF50952 69 100 3.53E-33 T 16-09-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 PANTHER PTHR19328:SF26 137 445 7.4E-191 T 16-09-2016 BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 PANTHER PTHR19328 137 445 7.4E-191 T 16-09-2016 BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 Pfam PF07995 Glucose / Sorbosone dehydrogenase 183 369 4.8E-13 T 16-09-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 PANTHER PTHR19328:SF26 48 103 7.4E-191 T 16-09-2016 BER92_RS16045 bfaec78a4a5a247e2645646f25a45ae3 445 PANTHER PTHR19328 48 103 7.4E-191 T 16-09-2016 BER92_RS12295 26c429a863d3d815840b82dae04817e2 148 Pfam PF02834 LigT like Phosphoesterase 34 117 1.0E-10 T 16-09-2016 IPR014051 Phosphoesterase, HXTX BER92_RS12295 26c429a863d3d815840b82dae04817e2 148 Gene3D G3DSA:3.90.1140.10 26 145 3.7E-18 T 16-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase BER92_RS12295 26c429a863d3d815840b82dae04817e2 148 PANTHER PTHR35561:SF1 1 147 1.6E-31 T 16-09-2016 BER92_RS12295 26c429a863d3d815840b82dae04817e2 148 SUPERFAMILY SSF55144 26 147 3.92E-18 T 16-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase BER92_RS12295 26c429a863d3d815840b82dae04817e2 148 PANTHER PTHR35561 1 147 1.6E-31 T 16-09-2016 BER92_RS17125 e4c13718ad6778a2e6014837bcd4937e 190 SUPERFAMILY SSF143081 69 167 1.96E-6 T 16-09-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SUPERFAMILY SSF47384 629 709 3.14E-21 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SMART SM00091 350 416 5.1E-9 T 16-09-2016 IPR000014 PAS domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SMART SM00091 493 560 3.6E-8 T 16-09-2016 IPR000014 PAS domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SMART SM00387 755 872 2.9E-39 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SMART SM00086 581 623 3.5E-6 T 16-09-2016 IPR001610 PAC motif BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SMART SM00086 421 463 14.0 T 16-09-2016 IPR001610 PAC motif BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SUPERFAMILY SSF55874 697 868 1.7E-45 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PANTHER PTHR24423 581 875 8.3E-284 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PANTHER PTHR24423 1012 1191 8.3E-284 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SUPERFAMILY SSF55785 342 461 1.08E-18 T 16-09-2016 IPR000014 PAS domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PANTHER PTHR24423:SF382 31 563 8.3E-284 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Gene3D G3DSA:1.10.287.130 635 694 2.2E-16 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Gene3D G3DSA:1.20.120.160 1190 1286 1.6E-11 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SMART SM00448 1032 1147 4.1E-35 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SMART SM00448 891 1007 8.7E-23 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SUPERFAMILY SSF55785 505 631 3.22E-18 T 16-09-2016 IPR000014 PAS domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 352 469 1.0E-17 T 16-09-2016 IPR000014 PAS domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 496 630 2.0E-15 T 16-09-2016 IPR000014 PAS domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SUPERFAMILY SSF52172 890 1013 4.55E-25 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Pfam PF00512 His Kinase A (phospho-acceptor) domain 643 708 3.6E-19 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PANTHER PTHR24423 31 563 8.3E-284 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PANTHER PTHR24423:SF382 581 875 8.3E-284 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Gene3D G3DSA:3.30.565.10 695 871 1.1E-45 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PANTHER PTHR24423:SF382 1012 1191 8.3E-284 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SUPERFAMILY SSF47226 1130 1143 7.2E-11 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SUPERFAMILY SSF47226 1179 1265 7.2E-11 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Gene3D G3DSA:3.40.50.2300 1030 1153 4.3E-40 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Pfam PF00072 Response regulator receiver domain 894 1007 1.3E-17 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Pfam PF00072 Response regulator receiver domain 1035 1148 9.0E-26 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Gene3D G3DSA:3.40.50.2300 887 1014 1.8E-25 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 755 871 1.6E-27 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SUPERFAMILY SSF52172 1031 1152 1.57E-36 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Pfam PF13426 PAS domain 361 462 1.4E-12 T 16-09-2016 IPR000014 PAS domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Pfam PF13426 PAS domain 505 622 6.7E-13 T 16-09-2016 IPR000014 PAS domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SMART SM00388 643 708 9.2E-23 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 SMART SM01079 83 271 2.5E-53 T 16-09-2016 IPR006189 CHASE domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 797 811 1.5E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 856 869 1.5E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 832 850 1.5E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 815 825 1.5E-14 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Pfam PF03924 CHASE domain 87 265 2.9E-39 T 16-09-2016 IPR006189 CHASE domain BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Gene3D G3DSA:3.30.450.20 342 461 8.8E-18 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Gene3D G3DSA:3.30.450.20 496 621 9.5E-20 T 16-09-2016 BER92_RS07450 eff9be2426f2e3f0ada6e3a098456799 1364 Pfam PF01627 Hpt domain 1202 1277 5.5E-7 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.5E-44 T 16-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 8.1E-17 T 16-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 8.1E-17 T 16-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 8.1E-17 T 16-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 SMART SM01403 7 101 5.5E-54 T 16-09-2016 IPR027486 Ribosomal protein S10 domain BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.205 T 16-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 16-09-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 Gene3D G3DSA:3.30.70.600 4 102 1.2E-41 T 16-09-2016 IPR027486 Ribosomal protein S10 domain BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 SUPERFAMILY SSF54999 5 102 1.03E-35 T 16-09-2016 IPR027486 Ribosomal protein S10 domain BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 8.7E-34 T 16-09-2016 IPR027486 Ribosomal protein S10 domain BER92_RS05160 72638f75733878971dccf4fe30ca3bf7 103 PANTHER PTHR11700 4 102 1.6E-48 T 16-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 PANTHER PTHR10909:SF294 107 309 2.1E-119 T 16-09-2016 BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 194 276 3.4E-35 T 16-09-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 257 283 - T 16-09-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 Pfam PF01012 Electron transfer flavoprotein domain 4 174 2.9E-31 T 16-09-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 PANTHER PTHR10909 107 309 2.1E-119 T 16-09-2016 BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 Gene3D G3DSA:3.40.50.1220 189 313 1.5E-57 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 SUPERFAMILY SSF52467 191 313 8.56E-47 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 PIRSF PIRSF000089 1 314 1.4E-102 T 16-09-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 Gene3D G3DSA:3.40.50.620 1 182 7.8E-44 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 SUPERFAMILY SSF52402 3 178 7.67E-42 T 16-09-2016 BER92_RS15620 8ce53aa564ad600f14d9b24049f85070 314 SMART SM00893 4 186 9.9E-37 T 16-09-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 SUPERFAMILY SSF51905 213 547 1.05E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PANTHER PTHR22912 216 546 8.0E-175 T 16-09-2016 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 426 442 3.5E-29 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 334 342 3.5E-29 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 231 253 3.5E-29 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 264 279 3.5E-29 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 510 528 3.5E-29 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 372 396 3.5E-29 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 Gene3D G3DSA:3.50.50.60 227 347 5.7E-40 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 Gene3D G3DSA:3.50.50.60 473 553 5.7E-40 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 SUPERFAMILY SSF51206 8 138 2.62E-15 T 16-09-2016 IPR018490 Cyclic nucleotide-binding-like BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PANTHER PTHR22912:SF138 216 546 8.0E-175 T 16-09-2016 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 500 522 1.6E-21 T 16-09-2016 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 251 1.6E-21 T 16-09-2016 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 464 480 1.6E-21 T 16-09-2016 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 333 351 1.6E-21 T 16-09-2016 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 376 394 1.6E-21 T 16-09-2016 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 Gene3D G3DSA:2.60.120.10 9 131 4.2E-9 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 Gene3D G3DSA:3.50.50.60 348 472 1.2E-16 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 230 536 1.4E-31 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS05650 9beb24a7565c9ecf63e6c008cde9e187 569 Pfam PF00027 Cyclic nucleotide-binding domain 32 117 7.6E-8 T 16-09-2016 IPR000595 Cyclic nucleotide-binding domain BER92_RS12425 c1f49cfe176fb4aa6f0f1d8244c847c0 62 PANTHER PTHR10815 4 61 2.0E-18 T 16-09-2016 BER92_RS12425 c1f49cfe176fb4aa6f0f1d8244c847c0 62 Gene3D G3DSA:1.10.10.10 3 37 6.6E-4 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS12425 c1f49cfe176fb4aa6f0f1d8244c847c0 62 SUPERFAMILY SSF46767 3 37 3.53E-5 T 16-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 BER92_RS12425 c1f49cfe176fb4aa6f0f1d8244c847c0 62 PANTHER PTHR10815:SF10 4 61 2.0E-18 T 16-09-2016 BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 Gene3D G3DSA:3.40.50.300 67 255 3.0E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 Gene3D G3DSA:3.40.50.300 296 313 3.0E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 9 417 53.354 T 16-09-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 SMART SM01086 319 414 7.3E-33 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 Pfam PF06689 ClpX C4-type zinc finger 16 53 7.8E-21 T 16-09-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 SUPERFAMILY SSF57716 16 51 9.27E-12 T 16-09-2016 BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 SMART SM00382 113 266 1.1E-10 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 Gene3D G3DSA:1.10.8.60 318 417 5.9E-37 T 16-09-2016 BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 Pfam PF07724 AAA domain (Cdc48 subfamily) 114 312 2.2E-50 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 SUPERFAMILY SSF52540 64 407 8.54E-71 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 319 396 5.3E-17 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 PANTHER PTHR11262 2 417 3.7E-252 T 16-09-2016 BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 SMART SM00994 15 54 3.7E-24 T 16-09-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 BER92_RS14365 06a9c2f7b7d0e9a2845a67fe24932719 428 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 14 414 2.2E-205 T 16-09-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 BER92_RS04260 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007:SF0 1 155 4.0E-29 T 16-09-2016 BER92_RS04260 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007 1 155 4.0E-29 T 16-09-2016 BER92_RS04260 7c8938bddc83437a51d7b7c2b5741e25 156 Pfam PF01609 Transposase DDE domain 1 153 3.5E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS18080 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007:SF0 1 155 4.0E-29 T 16-09-2016 BER92_RS18080 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007 1 155 4.0E-29 T 16-09-2016 BER92_RS18080 7c8938bddc83437a51d7b7c2b5741e25 156 Pfam PF01609 Transposase DDE domain 1 153 3.5E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS05475 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007:SF0 1 155 4.0E-29 T 16-09-2016 BER92_RS05475 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007 1 155 4.0E-29 T 16-09-2016 BER92_RS05475 7c8938bddc83437a51d7b7c2b5741e25 156 Pfam PF01609 Transposase DDE domain 1 153 3.5E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS18095 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007:SF0 1 155 4.0E-29 T 16-09-2016 BER92_RS18095 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007 1 155 4.0E-29 T 16-09-2016 BER92_RS18095 7c8938bddc83437a51d7b7c2b5741e25 156 Pfam PF01609 Transposase DDE domain 1 153 3.5E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06725 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007:SF0 1 155 4.0E-29 T 16-09-2016 BER92_RS06725 7c8938bddc83437a51d7b7c2b5741e25 156 PANTHER PTHR30007 1 155 4.0E-29 T 16-09-2016 BER92_RS06725 7c8938bddc83437a51d7b7c2b5741e25 156 Pfam PF01609 Transposase DDE domain 1 153 3.5E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS04385 1bf982190e7cc7aaed532873ea9c0900 283 Pfam PF03934 Type II secretion system (T2SS), protein K 31 250 1.0E-43 T 16-09-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 BER92_RS04385 1bf982190e7cc7aaed532873ea9c0900 283 PANTHER PTHR38831 1 281 5.0E-75 T 16-09-2016 BER92_RS04385 1bf982190e7cc7aaed532873ea9c0900 283 Gene3D G3DSA:1.10.40.60 100 192 2.8E-22 T 16-09-2016 BER92_RS04385 1bf982190e7cc7aaed532873ea9c0900 283 PANTHER PTHR38831:SF1 1 281 5.0E-75 T 16-09-2016 BER92_RS04385 1bf982190e7cc7aaed532873ea9c0900 283 SUPERFAMILY SSF158544 95 192 3.14E-22 T 16-09-2016 BER92_RS04385 1bf982190e7cc7aaed532873ea9c0900 283 PIRSF PIRSF002786 1 279 5.4E-53 T 16-09-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 BER92_RS14040 d7c12a5e53bdc1ade48e9e6fcc1f2815 327 Gene3D G3DSA:3.90.550.10 13 128 7.8E-9 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS14040 d7c12a5e53bdc1ade48e9e6fcc1f2815 327 Pfam PF00535 Glycosyl transferase family 2 16 164 3.8E-12 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS14040 d7c12a5e53bdc1ade48e9e6fcc1f2815 327 PANTHER PTHR10859 13 314 7.6E-76 T 16-09-2016 BER92_RS14040 d7c12a5e53bdc1ade48e9e6fcc1f2815 327 PANTHER PTHR10859:SF95 13 314 7.6E-76 T 16-09-2016 BER92_RS14040 d7c12a5e53bdc1ade48e9e6fcc1f2815 327 SUPERFAMILY SSF53448 12 253 4.78E-28 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS07420 5cb031ef64d43bdc8c6e04bc2ef4b6b1 343 PANTHER PTHR34220 19 343 5.9E-51 T 16-09-2016 BER92_RS07420 5cb031ef64d43bdc8c6e04bc2ef4b6b1 343 Pfam PF06580 Histidine kinase 153 230 1.2E-22 T 16-09-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 BER92_RS07420 5cb031ef64d43bdc8c6e04bc2ef4b6b1 343 SUPERFAMILY SSF55874 206 314 2.15E-8 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS07420 5cb031ef64d43bdc8c6e04bc2ef4b6b1 343 Gene3D G3DSA:3.30.565.10 205 288 4.7E-7 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS05220 4906a83aa764ce6fccf00307434cb9c7 105 PANTHER PTHR12903 4 104 5.4E-41 T 16-09-2016 BER92_RS05220 4906a83aa764ce6fccf00307434cb9c7 105 Pfam PF00467 KOW motif 7 35 1.4E-5 T 16-09-2016 IPR005824 KOW BER92_RS05220 4906a83aa764ce6fccf00307434cb9c7 105 SMART SM00739 4 31 6.1E-5 T 16-09-2016 IPR005824 KOW BER92_RS05220 4906a83aa764ce6fccf00307434cb9c7 105 Gene3D G3DSA:2.30.30.30 4 92 1.3E-20 T 16-09-2016 IPR014722 Ribosomal protein L2 domain 2 BER92_RS05220 4906a83aa764ce6fccf00307434cb9c7 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 19.297 T 16-09-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05220 4906a83aa764ce6fccf00307434cb9c7 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 102 8.0E-33 T 16-09-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05220 4906a83aa764ce6fccf00307434cb9c7 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 102 3.0E-23 T 16-09-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05220 4906a83aa764ce6fccf00307434cb9c7 105 SUPERFAMILY SSF50104 3 99 1.56E-29 T 16-09-2016 IPR008991 Translation protein SH3-like domain BER92_RS16050 45dcbe145030331b052c2804e57fc818 102 Pfam PF11607 Protein of unknown function (DUF3247) 1 92 6.6E-41 T 16-09-2016 IPR021649 Protein of unknown function DUF3247 BER92_RS17780 6cdef91235f43b8988715e864a78c8aa 722 SUPERFAMILY SSF55486 47 719 4.97E-180 T 16-09-2016 BER92_RS17780 6cdef91235f43b8988715e864a78c8aa 722 Pfam PF01432 Peptidase family M3 271 719 1.4E-134 T 16-09-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 BER92_RS17780 6cdef91235f43b8988715e864a78c8aa 722 PANTHER PTHR11804 46 722 0.0 T 16-09-2016 BER92_RS17780 6cdef91235f43b8988715e864a78c8aa 722 Gene3D G3DSA:3.40.390.10 403 545 1.4E-53 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS17780 6cdef91235f43b8988715e864a78c8aa 722 PANTHER PTHR11804:SF47 46 722 0.0 T 16-09-2016 BER92_RS17780 6cdef91235f43b8988715e864a78c8aa 722 Gene3D G3DSA:1.10.1370.10 546 720 6.3E-115 T 16-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BER92_RS17780 6cdef91235f43b8988715e864a78c8aa 722 Gene3D G3DSA:1.10.1370.10 187 393 6.3E-115 T 16-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BER92_RS17780 6cdef91235f43b8988715e864a78c8aa 722 Gene3D G3DSA:1.20.1050.40 53 184 1.4E-21 T 16-09-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 Pfam PF12833 Helix-turn-helix domain 395 476 8.8E-17 T 16-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 SUPERFAMILY SSF46689 376 423 7.18E-6 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 Gene3D G3DSA:1.10.10.60 373 428 3.9E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 SUPERFAMILY SSF48452 61 164 7.59E-7 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 SMART SM00342 389 474 1.4E-19 T 16-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 426 470 - T 16-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 PANTHER PTHR11019 131 476 1.2E-92 T 16-09-2016 BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 Gene3D G3DSA:1.25.40.10 300 336 1.5E-4 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 Gene3D G3DSA:1.25.40.10 62 161 1.5E-4 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS14770 f558085a13a34831344a36cf4f294a06 476 PANTHER PTHR11019:SF114 131 476 1.2E-92 T 16-09-2016 BER92_RS05040 0a3d811b05cb39abaf526558525edb2c 217 Pfam PF03550 Outer membrane lipoprotein LolB 58 213 1.8E-38 T 16-09-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 BER92_RS05040 0a3d811b05cb39abaf526558525edb2c 217 PANTHER PTHR30634:SF11 36 215 1.2E-13 T 16-09-2016 BER92_RS05040 0a3d811b05cb39abaf526558525edb2c 217 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 4 215 24.412 T 16-09-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 BER92_RS05040 0a3d811b05cb39abaf526558525edb2c 217 SUPERFAMILY SSF89392 44 215 4.71E-38 T 16-09-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX BER92_RS05040 0a3d811b05cb39abaf526558525edb2c 217 PANTHER PTHR30634 36 215 1.2E-13 T 16-09-2016 BER92_RS05040 0a3d811b05cb39abaf526558525edb2c 217 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 37 214 2.9E-25 T 16-09-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 BER92_RS05040 0a3d811b05cb39abaf526558525edb2c 217 Gene3D G3DSA:2.50.20.10 14 215 4.9E-47 T 16-09-2016 BER92_RS09220 aa65f3ff8fca53e4410df8765aef23ff 200 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 197 32.412 T 16-09-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 BER92_RS09220 aa65f3ff8fca53e4410df8765aef23ff 200 PIRSF PIRSF000495 2 199 1.4E-62 T 16-09-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 BER92_RS09220 aa65f3ff8fca53e4410df8765aef23ff 200 SUPERFAMILY SSF52317 4 197 2.87E-50 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS09220 aa65f3ff8fca53e4410df8765aef23ff 200 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 197 2.3E-66 T 16-09-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 BER92_RS09220 aa65f3ff8fca53e4410df8765aef23ff 200 Pfam PF00117 Glutamine amidotransferase class-I 6 195 8.1E-20 T 16-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 BER92_RS09220 aa65f3ff8fca53e4410df8765aef23ff 200 PANTHER PTHR21235:SF1 3 200 8.5E-81 T 16-09-2016 BER92_RS09220 aa65f3ff8fca53e4410df8765aef23ff 200 PANTHER PTHR21235 3 200 8.5E-81 T 16-09-2016 BER92_RS09220 aa65f3ff8fca53e4410df8765aef23ff 200 Gene3D G3DSA:3.40.50.880 1 197 6.6E-70 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS02780 1284d2dd18376e7e32f94e1d5436dffa 470 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 134 240 5.1E-40 T 16-09-2016 IPR012997 Rare lipoprotein A BER92_RS02780 1284d2dd18376e7e32f94e1d5436dffa 470 Pfam PF05036 Sporulation related domain 395 468 2.0E-11 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS02780 1284d2dd18376e7e32f94e1d5436dffa 470 Gene3D G3DSA:2.40.40.10 173 217 1.8E-4 T 16-09-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain BER92_RS02780 1284d2dd18376e7e32f94e1d5436dffa 470 Pfam PF03330 Lytic transglycolase 132 221 1.2E-22 T 16-09-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain BER92_RS02780 1284d2dd18376e7e32f94e1d5436dffa 470 SUPERFAMILY SSF50685 119 217 5.93E-10 T 16-09-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain BER92_RS02780 1284d2dd18376e7e32f94e1d5436dffa 470 PANTHER PTHR34183:SF1 10 331 2.9E-135 T 16-09-2016 BER92_RS02780 1284d2dd18376e7e32f94e1d5436dffa 470 SUPERFAMILY SSF110997 397 467 4.58E-7 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS02780 1284d2dd18376e7e32f94e1d5436dffa 470 PANTHER PTHR34183 10 331 2.9E-135 T 16-09-2016 BER92_RS02780 1284d2dd18376e7e32f94e1d5436dffa 470 Gene3D G3DSA:3.30.70.1070 396 462 7.9E-7 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS13425 81ee35ed475d50d93facbefb1a12f475 188 PANTHER PTHR30327 1 188 1.1E-63 T 16-09-2016 BER92_RS13425 81ee35ed475d50d93facbefb1a12f475 188 Gene3D G3DSA:3.40.1740.10 132 178 3.0E-30 T 16-09-2016 BER92_RS13425 81ee35ed475d50d93facbefb1a12f475 188 Gene3D G3DSA:3.40.1740.10 6 45 3.0E-30 T 16-09-2016 BER92_RS13425 81ee35ed475d50d93facbefb1a12f475 188 PANTHER PTHR30327:SF1 1 188 1.1E-63 T 16-09-2016 BER92_RS13425 81ee35ed475d50d93facbefb1a12f475 188 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 6 188 37.156 T 16-09-2016 IPR003774 Protein of unknown function UPF0301 BER92_RS13425 81ee35ed475d50d93facbefb1a12f475 188 Pfam PF02622 Uncharacterized ACR, COG1678 17 175 1.2E-48 T 16-09-2016 IPR003774 Protein of unknown function UPF0301 BER92_RS13425 81ee35ed475d50d93facbefb1a12f475 188 SUPERFAMILY SSF143456 6 188 1.57E-62 T 16-09-2016 BER92_RS13425 81ee35ed475d50d93facbefb1a12f475 188 Gene3D G3DSA:3.30.70.1300 46 131 2.2E-28 T 16-09-2016 BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 PANTHER PTHR12383:SF27 1 245 3.5E-115 T 16-09-2016 BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 PANTHER PTHR12383 1 245 3.5E-115 T 16-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 Gene3D G3DSA:2.10.109.10 204 249 1.2E-49 T 16-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 Gene3D G3DSA:2.10.109.10 60 137 1.2E-49 T 16-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 49 246 3.1E-45 T 16-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 ProSitePatterns PS00760 Signal peptidases I lysine active site. 129 141 - T 16-09-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 SUPERFAMILY SSF51306 61 250 3.3E-60 T 16-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 ProSitePatterns PS00761 Signal peptidases I signature 3. 209 222 - T 16-09-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 Pfam PF00717 Peptidase S24-like 69 151 5.6E-22 T 16-09-2016 IPR019759 Peptidase S24/S26A/S26B BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 63 79 1.2E-22 T 16-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 204 223 1.2E-22 T 16-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BER92_RS06965 421aeea6a2e3857a9b84ac33f3d4d0b6 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 127 139 1.2E-22 T 16-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BER92_RS12260 c3df1f127a29d6b7d102fc54015f9e37 115 Pfam PF01042 Endoribonuclease L-PSP 9 113 5.6E-24 T 16-09-2016 IPR006175 YjgF/YER057c/UK114 family BER92_RS12260 c3df1f127a29d6b7d102fc54015f9e37 115 SUPERFAMILY SSF55298 3 114 3.46E-30 T 16-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like BER92_RS12260 c3df1f127a29d6b7d102fc54015f9e37 115 PANTHER PTHR11803 1 113 1.7E-36 T 16-09-2016 IPR006175 YjgF/YER057c/UK114 family BER92_RS12260 c3df1f127a29d6b7d102fc54015f9e37 115 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 16-09-2016 IPR019897 RidA, conserved site BER92_RS12260 c3df1f127a29d6b7d102fc54015f9e37 115 Gene3D G3DSA:3.30.1330.40 6 114 1.3E-23 T 16-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like BER92_RS12260 c3df1f127a29d6b7d102fc54015f9e37 115 PANTHER PTHR11803:SF17 1 113 1.7E-36 T 16-09-2016 BER92_RS18205 0609ea710d860e27eb81858825f50777 107 PANTHER PTHR37290:SF1 20 65 2.2E-15 T 16-09-2016 BER92_RS18205 0609ea710d860e27eb81858825f50777 107 PANTHER PTHR37290 20 65 2.2E-15 T 16-09-2016 BER92_RS11180 c41563cb901fb38ce0bbe07e3ec58f9d 300 SUPERFAMILY SSF51717 14 278 1.7E-96 T 16-09-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 BER92_RS11180 c41563cb901fb38ce0bbe07e3ec58f9d 300 Gene3D G3DSA:3.20.20.20 17 279 2.6E-104 T 16-09-2016 IPR000489 Pterin-binding domain GO:0042558 BER92_RS11180 c41563cb901fb38ce0bbe07e3ec58f9d 300 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 56 69 - T 16-09-2016 IPR000489 Pterin-binding domain GO:0042558 BER92_RS11180 c41563cb901fb38ce0bbe07e3ec58f9d 300 PANTHER PTHR20941 18 283 9.1E-115 T 16-09-2016 BER92_RS11180 c41563cb901fb38ce0bbe07e3ec58f9d 300 PANTHER PTHR20941:SF1 18 283 9.1E-115 T 16-09-2016 BER92_RS11180 c41563cb901fb38ce0bbe07e3ec58f9d 300 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 21 277 1.7E-96 T 16-09-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 BER92_RS11180 c41563cb901fb38ce0bbe07e3ec58f9d 300 Pfam PF00809 Pterin binding enzyme 23 263 9.0E-81 T 16-09-2016 IPR000489 Pterin-binding domain GO:0042558 BER92_RS11180 c41563cb901fb38ce0bbe07e3ec58f9d 300 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 22 37 - T 16-09-2016 IPR000489 Pterin-binding domain GO:0042558 BER92_RS01800 dafe213f104cf97c036a9f84f2449a30 346 PANTHER PTHR30238 211 346 2.0E-161 T 16-09-2016 BER92_RS01800 dafe213f104cf97c036a9f84f2449a30 346 PANTHER PTHR30238:SF3 116 164 2.0E-161 T 16-09-2016 BER92_RS01800 dafe213f104cf97c036a9f84f2449a30 346 PANTHER PTHR30238:SF3 211 346 2.0E-161 T 16-09-2016 BER92_RS01800 dafe213f104cf97c036a9f84f2449a30 346 Pfam PF04332 Protein of unknown function (DUF475) 49 338 2.2E-127 T 16-09-2016 IPR007427 Protein of unknown function DUF475 BER92_RS01800 dafe213f104cf97c036a9f84f2449a30 346 PANTHER PTHR30238 116 164 2.0E-161 T 16-09-2016 BER92_RS01800 dafe213f104cf97c036a9f84f2449a30 346 PANTHER PTHR30238:SF3 1 91 2.0E-161 T 16-09-2016 BER92_RS01800 dafe213f104cf97c036a9f84f2449a30 346 PANTHER PTHR30238 1 91 2.0E-161 T 16-09-2016 BER92_RS11925 ff56968467c5f4e428cd72d94e5b9028 279 PANTHER PTHR21666 102 276 1.2E-46 T 16-09-2016 BER92_RS11925 ff56968467c5f4e428cd72d94e5b9028 279 Gene3D G3DSA:2.70.70.10 126 276 6.8E-45 T 16-09-2016 BER92_RS11925 ff56968467c5f4e428cd72d94e5b9028 279 PANTHER PTHR21666:SF224 102 276 1.2E-46 T 16-09-2016 BER92_RS11925 ff56968467c5f4e428cd72d94e5b9028 279 Pfam PF01551 Peptidase family M23 176 271 6.6E-29 T 16-09-2016 IPR016047 Peptidase M23 BER92_RS11925 ff56968467c5f4e428cd72d94e5b9028 279 SUPERFAMILY SSF51261 45 275 9.16E-54 T 16-09-2016 IPR011055 Duplicated hybrid motif BER92_RS03290 2b703cdff76d221e9cdd1ec97e9ed47f 59 SUPERFAMILY SSF46785 2 45 2.97E-9 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS03290 2b703cdff76d221e9cdd1ec97e9ed47f 59 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 44 5.7E-11 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS03290 2b703cdff76d221e9cdd1ec97e9ed47f 59 Gene3D G3DSA:1.10.10.10 2 43 6.8E-12 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS03290 2b703cdff76d221e9cdd1ec97e9ed47f 59 PANTHER PTHR30126 3 41 1.0E-16 T 16-09-2016 BER92_RS03290 2b703cdff76d221e9cdd1ec97e9ed47f 59 PANTHER PTHR30126:SF33 3 41 1.0E-16 T 16-09-2016 BER92_RS19260 c1de4a50125613be1e8b1b1112adb25c 66 ProDom PD031864 YIGF SIMILAR ESCHERICHIA COLI MEMBRANE XCC4223 XAC4357 XAC2195 9 53 2.0E-14 T 16-09-2016 BER92_RS16470 951cdb5f965436a2b97fa1e1fb5ab066 60 PANTHER PTHR32063 1 60 1.5E-28 T 16-09-2016 BER92_RS16470 951cdb5f965436a2b97fa1e1fb5ab066 60 PANTHER PTHR32063:SF13 1 60 1.5E-28 T 16-09-2016 BER92_RS16470 951cdb5f965436a2b97fa1e1fb5ab066 60 PRINTS PR00702 Acriflavin resistance protein family signature 4 27 7.4E-23 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16470 951cdb5f965436a2b97fa1e1fb5ab066 60 PRINTS PR00702 Acriflavin resistance protein family signature 31 52 7.4E-23 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16470 951cdb5f965436a2b97fa1e1fb5ab066 60 Pfam PF00873 AcrB/AcrD/AcrF family 1 59 7.8E-24 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16470 951cdb5f965436a2b97fa1e1fb5ab066 60 Gene3D G3DSA:1.20.1640.10 3 59 5.5E-15 T 16-09-2016 BER92_RS16470 951cdb5f965436a2b97fa1e1fb5ab066 60 SUPERFAMILY SSF82866 3 59 8.89E-14 T 16-09-2016 BER92_RS05345 54198fe909da9057ed744da2d3bcb87f 237 PANTHER PTHR11820 26 236 1.8E-155 T 16-09-2016 BER92_RS05345 54198fe909da9057ed744da2d3bcb87f 237 SUPERFAMILY SSF56529 22 229 1.7E-62 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS05345 54198fe909da9057ed744da2d3bcb87f 237 PANTHER PTHR11820:SF87 26 236 1.8E-155 T 16-09-2016 BER92_RS05345 54198fe909da9057ed744da2d3bcb87f 237 Gene3D G3DSA:3.90.850.10 22 228 3.1E-71 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS05345 54198fe909da9057ed744da2d3bcb87f 237 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 26 228 2.2E-52 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS01375 29fe087bc0aa18896b43a69d20d1bbeb 227 Hamap MF_00165 Thymidylate kinase [tmk]. 10 200 21.431 T 16-09-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 BER92_RS01375 29fe087bc0aa18896b43a69d20d1bbeb 227 PANTHER PTHR10344 9 202 4.8E-50 T 16-09-2016 BER92_RS01375 29fe087bc0aa18896b43a69d20d1bbeb 227 Gene3D G3DSA:3.40.50.300 8 200 3.8E-49 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01375 29fe087bc0aa18896b43a69d20d1bbeb 227 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 9 183 5.2E-40 T 16-09-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 BER92_RS01375 29fe087bc0aa18896b43a69d20d1bbeb 227 SUPERFAMILY SSF52540 9 190 1.86E-37 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01375 29fe087bc0aa18896b43a69d20d1bbeb 227 Pfam PF02223 Thymidylate kinase 14 182 9.6E-39 T 16-09-2016 BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 Pfam PF01726 LexA DNA binding domain 2 64 2.7E-19 T 16-09-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 PANTHER PTHR33516:SF2 1 213 8.3E-85 T 16-09-2016 BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 Hamap MF_00015 LexA repressor [lexA]. 2 212 29.644 T 16-09-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 Gene3D G3DSA:2.10.109.10 89 210 5.7E-38 T 16-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 SUPERFAMILY SSF51306 88 210 3.66E-33 T 16-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 TIGRFAM TIGR00498 lexA: repressor LexA 2 211 9.3E-54 T 16-09-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 SUPERFAMILY SSF46785 1 68 1.48E-18 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 Gene3D G3DSA:1.10.10.10 2 68 2.2E-23 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 PANTHER PTHR33516 1 213 8.3E-85 T 16-09-2016 BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 Pfam PF00717 Peptidase S24-like 128 193 3.1E-14 T 16-09-2016 IPR019759 Peptidase S24/S26A/S26B BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 125 135 1.5E-8 T 16-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 164 176 1.5E-8 T 16-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BER92_RS11050 bd3d4cc18706851005e54091031f657c 213 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 136 147 1.5E-8 T 16-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BER92_RS11080 58599f3b14d0b0605035b8563b89a34d 440 Gene3D G3DSA:2.160.20.10 15 438 9.9E-68 T 16-09-2016 IPR012334 Pectin lyase fold BER92_RS11080 58599f3b14d0b0605035b8563b89a34d 440 Pfam PF16380 Domain of unknown function 364 420 7.2E-10 T 16-09-2016 IPR032153 Domain of unknown function DUF4990 BER92_RS11080 58599f3b14d0b0605035b8563b89a34d 440 Pfam PF13229 Right handed beta helix region 125 308 7.5E-7 T 16-09-2016 BER92_RS11080 58599f3b14d0b0605035b8563b89a34d 440 SUPERFAMILY SSF51126 12 438 1.43E-59 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 PANTHER PTHR24423:SF374 869 1254 2.0E-275 T 16-09-2016 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SUPERFAMILY SSF55781 272 432 2.62E-24 T 16-09-2016 IPR029016 GAF domain-like BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00065 695 852 0.01 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00065 285 433 7.7E-12 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Gene3D G3DSA:1.10.287.130 864 932 3.7E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SUPERFAMILY SSF55874 926 1095 8.51E-47 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00091 144 209 4.1 T 16-09-2016 IPR000014 PAS domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00091 563 629 1.0E-11 T 16-09-2016 IPR000014 PAS domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00091 437 502 1.4 T 16-09-2016 IPR000014 PAS domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Pfam PF08447 PAS fold 586 669 2.1E-19 T 16-09-2016 IPR013655 PAS fold-3 GO:0005515 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 434 558 2.8E-10 T 16-09-2016 IPR000014 PAS domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 559 682 1.3E-27 T 16-09-2016 IPR000014 PAS domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Pfam PF08448 PAS fold 150 265 3.3E-8 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Pfam PF08448 PAS fold 444 552 5.1E-9 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SUPERFAMILY SSF47384 860 937 1.18E-15 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SUPERFAMILY SSF55785 548 675 2.51E-33 T 16-09-2016 IPR000014 PAS domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Pfam PF00512 His Kinase A (phospho-acceptor) domain 872 934 5.0E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00387 984 1097 3.1E-41 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Gene3D G3DSA:3.30.565.10 938 1097 1.8E-45 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Gene3D G3DSA:3.30.450.20 434 548 9.1E-25 T 16-09-2016 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Gene3D G3DSA:3.30.450.20 555 675 1.2E-36 T 16-09-2016 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Pfam PF13185 GAF domain 720 843 5.4E-8 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 PANTHER PTHR24423 120 681 2.0E-275 T 16-09-2016 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Gene3D G3DSA:3.30.450.40 702 844 6.6E-10 T 16-09-2016 IPR029016 GAF domain-like BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SUPERFAMILY SSF55781 720 851 3.49E-16 T 16-09-2016 IPR029016 GAF domain-like BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SUPERFAMILY SSF55785 146 261 1.95E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Gene3D G3DSA:3.30.450.20 148 263 1.7E-9 T 16-09-2016 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Pfam PF01590 GAF domain 285 419 2.2E-11 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Pfam PF00072 Response regulator receiver domain 1129 1241 1.4E-16 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Gene3D G3DSA:3.30.450.40 264 433 3.2E-18 T 16-09-2016 IPR029016 GAF domain-like BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00388 871 937 2.4E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SUPERFAMILY SSF52172 1124 1246 2.42E-28 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00448 1126 1241 1.2E-22 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1021 1035 4.0E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1056 1074 4.0E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1081 1094 4.0E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1039 1049 4.0E-15 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 PANTHER PTHR24423 869 1254 2.0E-275 T 16-09-2016 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SUPERFAMILY SSF55785 424 548 4.71E-20 T 16-09-2016 IPR000014 PAS domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00086 219 263 390.0 T 16-09-2016 IPR001610 PAC motif BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00086 509 551 3.9E-7 T 16-09-2016 IPR001610 PAC motif BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 SMART SM00086 635 677 2.9E-8 T 16-09-2016 IPR001610 PAC motif BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 PANTHER PTHR24423:SF374 120 681 2.0E-275 T 16-09-2016 BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 984 1096 4.4E-26 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS11660 34b364512b63a8e595631f52f219889d 1255 Gene3D G3DSA:3.40.50.2300 1124 1250 3.3E-28 T 16-09-2016 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 PRINTS PR00059 Ribosomal protein L6 signature 139 160 3.5E-33 T 16-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 PRINTS PR00059 Ribosomal protein L6 signature 69 94 3.5E-33 T 16-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 PRINTS PR00059 Ribosomal protein L6 signature 97 113 3.5E-33 T 16-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 PANTHER PTHR11655 1 175 7.0E-81 T 16-09-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 174 36.095 T 16-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 Gene3D G3DSA:3.90.930.12 2 80 1.3E-21 T 16-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 SUPERFAMILY SSF56053 2 80 1.73E-18 T 16-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 Pfam PF00347 Ribosomal protein L6 88 162 7.0E-19 T 16-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 Pfam PF00347 Ribosomal protein L6 12 80 6.7E-15 T 16-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 SUPERFAMILY SSF56053 81 174 4.6E-35 T 16-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 152 160 - T 16-09-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 PANTHER PTHR11655:SF14 1 175 7.0E-81 T 16-09-2016 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 Gene3D G3DSA:3.90.930.12 81 174 2.7E-39 T 16-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 PIRSF PIRSF002162 1 175 9.5E-41 T 16-09-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS05240 76b9402f3d93a838c7eec4ba3d918405 175 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 174 5.8E-68 T 16-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 15 337 4.3E-72 T 16-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 SUPERFAMILY SSF51971 342 528 4.0E-40 T 16-09-2016 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 384 646 1.1E-22 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 Gene3D G3DSA:3.20.20.70 12 368 5.3E-111 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 386 405 9.3E-11 T 16-09-2016 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 625 641 9.3E-11 T 16-09-2016 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 506 524 9.3E-11 T 16-09-2016 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 Gene3D G3DSA:3.50.50.60 479 632 4.8E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 Gene3D G3DSA:3.50.50.60 369 473 1.1E-26 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 PANTHER PTHR22893 2 426 8.0E-240 T 16-09-2016 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 SUPERFAMILY SSF51905 477 634 1.97E-19 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 SUPERFAMILY SSF51395 10 371 5.76E-102 T 16-09-2016 BER92_RS02225 0ff40dd510b0c136bb30ca57cbc2c8c2 679 PANTHER PTHR22893:SF25 2 426 8.0E-240 T 16-09-2016 BER92_RS01940 a9926277c9346eed9cf03899d4a61754 402 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 79 5.9E-35 T 16-09-2016 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 BER92_RS01940 a9926277c9346eed9cf03899d4a61754 402 Pfam PF07055 Enoyl reductase FAD binding domain 327 390 3.3E-30 T 16-09-2016 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 BER92_RS01940 a9926277c9346eed9cf03899d4a61754 402 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 318 1.1E-109 T 16-09-2016 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 BER92_RS01940 a9926277c9346eed9cf03899d4a61754 402 Gene3D G3DSA:3.40.50.720 178 281 6.0E-6 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01940 a9926277c9346eed9cf03899d4a61754 402 Gene3D G3DSA:3.40.50.720 42 145 6.0E-6 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01940 a9926277c9346eed9cf03899d4a61754 402 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 396 56.13 T 16-09-2016 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 BER92_RS01940 a9926277c9346eed9cf03899d4a61754 402 PANTHER PTHR37480 2 402 1.0E-250 T 16-09-2016 BER92_RS01200 24a28a1d6a786098db024da995d51b3d 113 Pfam PF00873 AcrB/AcrD/AcrF family 40 85 2.0E-12 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01200 24a28a1d6a786098db024da995d51b3d 113 PANTHER PTHR32063 40 84 2.3E-14 T 16-09-2016 BER92_RS01200 24a28a1d6a786098db024da995d51b3d 113 Gene3D G3DSA:1.10.3850.10 40 87 4.3E-9 T 16-09-2016 BER92_RS01200 24a28a1d6a786098db024da995d51b3d 113 PANTHER PTHR32063:SF24 40 84 2.3E-14 T 16-09-2016 BER92_RS01200 24a28a1d6a786098db024da995d51b3d 113 SUPERFAMILY SSF82866 37 92 9.29E-9 T 16-09-2016 BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.6E-21 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 Gene3D G3DSA:3.40.190.10 176 263 1.8E-32 T 16-09-2016 BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 Gene3D G3DSA:1.10.10.10 1 85 7.6E-29 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 Pfam PF03466 LysR substrate binding domain 87 292 2.4E-49 T 16-09-2016 IPR005119 LysR, substrate-binding BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-7 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-7 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-7 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 PANTHER PTHR30346 1 312 1.3E-132 T 16-09-2016 BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 SUPERFAMILY SSF53850 88 295 5.77E-45 T 16-09-2016 BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 PANTHER PTHR30346:SF15 1 312 1.3E-132 T 16-09-2016 BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 SUPERFAMILY SSF46785 1 111 4.91E-23 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04875 ae982e5228a310d7f9e0df3c12d6422c 313 Gene3D G3DSA:3.40.190.10 89 175 9.6E-25 T 16-09-2016 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PANTHER PTHR24423:SF524 435 655 8.1E-191 T 16-09-2016 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 Pfam PF01627 Hpt domain 666 745 5.8E-10 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 Pfam PF00072 Response regulator receiver domain 499 611 1.6E-23 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PANTHER PTHR24423 435 655 8.1E-191 T 16-09-2016 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 SUPERFAMILY SSF55874 164 336 7.47E-50 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 SMART SM00388 110 175 1.6E-20 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 Pfam PF00512 His Kinase A (phospho-acceptor) domain 110 174 2.7E-17 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 Gene3D G3DSA:3.30.565.10 182 336 2.4E-50 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PANTHER PTHR24423 29 41 8.1E-191 T 16-09-2016 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PANTHER PTHR24423 89 341 8.1E-191 T 16-09-2016 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PRINTS PR00344 Bacterial sensor protein C-terminal signature 263 277 1.5E-17 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 335 1.5E-17 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 316 1.5E-17 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 291 1.5E-17 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 Gene3D G3DSA:3.40.50.2300 494 622 6.5E-44 T 16-09-2016 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 Gene3D G3DSA:1.10.287.130 104 171 6.5E-15 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 SMART SM00448 497 613 4.0E-36 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 SUPERFAMILY SSF47226 637 749 2.88E-22 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PANTHER PTHR24423:SF524 29 41 8.1E-191 T 16-09-2016 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 PANTHER PTHR24423:SF524 89 341 8.1E-191 T 16-09-2016 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 222 336 4.1E-30 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 SUPERFAMILY SSF47384 93 176 1.49E-19 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 SMART SM00387 222 338 2.8E-42 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 SUPERFAMILY SSF52172 495 619 3.7E-38 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS17905 a05716c6f8305669ce4ced2fdda8dd8c 764 Gene3D G3DSA:1.20.120.160 641 750 3.2E-24 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS15690 4c5511dcfba51fb31301a9756fee4800 460 Pfam PF00534 Glycosyl transferases group 1 329 428 1.7E-8 T 16-09-2016 IPR001296 Glycosyl transferase, family 1 BER92_RS15690 4c5511dcfba51fb31301a9756fee4800 460 SUPERFAMILY SSF53756 107 453 2.2E-27 T 16-09-2016 BER92_RS15690 4c5511dcfba51fb31301a9756fee4800 460 PANTHER PTHR12526 143 382 2.3E-14 T 16-09-2016 BER92_RS15690 4c5511dcfba51fb31301a9756fee4800 460 PANTHER PTHR12526 402 457 2.3E-14 T 16-09-2016 BER92_RS15690 4c5511dcfba51fb31301a9756fee4800 460 Gene3D G3DSA:3.40.50.2000 245 430 1.4E-8 T 16-09-2016 BER92_RS03565 d0098e506e76e4da6657c5bdff6059c6 199 PANTHER PTHR11067 1 194 1.1E-75 T 16-09-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 BER92_RS03565 d0098e506e76e4da6657c5bdff6059c6 199 Gene3D G3DSA:3.90.950.10 1 195 7.2E-74 T 16-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like BER92_RS03565 d0098e506e76e4da6657c5bdff6059c6 199 Pfam PF01725 Ham1 family 4 191 5.5E-50 T 16-09-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 BER92_RS03565 d0098e506e76e4da6657c5bdff6059c6 199 SUPERFAMILY SSF52972 1 194 2.88E-69 T 16-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like BER92_RS03565 d0098e506e76e4da6657c5bdff6059c6 199 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 196 49.887 T 16-09-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 BER92_RS03565 d0098e506e76e4da6657c5bdff6059c6 199 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 4 194 1.2E-52 T 16-09-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 BER92_RS03565 d0098e506e76e4da6657c5bdff6059c6 199 PANTHER PTHR11067:SF9 1 194 1.1E-75 T 16-09-2016 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PRINTS PR00738 Glycosyl hydrolase family 20 signature 498 514 1.2E-41 T 16-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PRINTS PR00738 Glycosyl hydrolase family 20 signature 151 171 1.2E-41 T 16-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PRINTS PR00738 Glycosyl hydrolase family 20 signature 188 205 1.2E-41 T 16-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PRINTS PR00738 Glycosyl hydrolase family 20 signature 217 238 1.2E-41 T 16-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PRINTS PR00738 Glycosyl hydrolase family 20 signature 516 533 1.2E-41 T 16-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PRINTS PR00738 Glycosyl hydrolase family 20 signature 354 367 1.2E-41 T 16-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PRINTS PR00738 Glycosyl hydrolase family 20 signature 284 301 1.2E-41 T 16-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PRINTS PR00738 Glycosyl hydrolase family 20 signature 332 350 1.2E-41 T 16-09-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 Gene3D G3DSA:3.20.20.80 192 570 7.7E-137 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 Gene3D G3DSA:3.30.379.10 46 191 3.1E-28 T 16-09-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 SUPERFAMILY SSF51445 194 547 1.14E-120 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 Pfam PF13290 Chitobiase/beta-hexosaminidase C-terminal domain 584 636 9.2E-12 T 16-09-2016 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PANTHER PTHR22600:SF21 3 694 1.3E-268 T 16-09-2016 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 194 534 3.1E-119 T 16-09-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 63 191 2.0E-19 T 16-09-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 Gene3D G3DSA:2.60.120.260 733 787 9.8E-5 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 PANTHER PTHR22600 3 694 1.3E-268 T 16-09-2016 BER92_RS13765 ee49714236cdf9ed1c7c1d99b9973ddb 814 SUPERFAMILY SSF55545 52 193 1.83E-24 T 16-09-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like BER92_RS17825 36fa000e3c5b7ab6fa3b41df711f059b 557 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 1 554 49.602 T 16-09-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 BER92_RS17825 36fa000e3c5b7ab6fa3b41df711f059b 557 SUPERFAMILY SSF56112 92 160 1.9E-32 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS17825 36fa000e3c5b7ab6fa3b41df711f059b 557 SUPERFAMILY SSF56112 201 439 1.9E-32 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS17825 36fa000e3c5b7ab6fa3b41df711f059b 557 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 5 449 1.2E-181 T 16-09-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 BER92_RS17825 36fa000e3c5b7ab6fa3b41df711f059b 557 PANTHER PTHR10566 4 447 1.3E-238 T 16-09-2016 BER92_RS17825 36fa000e3c5b7ab6fa3b41df711f059b 557 Pfam PF03109 ABC1 family 110 232 4.0E-29 T 16-09-2016 IPR004147 UbiB domain BER92_RS17825 36fa000e3c5b7ab6fa3b41df711f059b 557 PANTHER PTHR10566:SF79 4 447 1.3E-238 T 16-09-2016 BER92_RS17825 36fa000e3c5b7ab6fa3b41df711f059b 557 Gene3D G3DSA:3.90.1200.10 242 323 7.7E-4 T 16-09-2016 BER92_RS17830 9664862e5c789b1ec179dce8bdcddca9 214 PANTHER PTHR38693:SF1 2 214 2.3E-66 T 16-09-2016 BER92_RS17830 9664862e5c789b1ec179dce8bdcddca9 214 Pfam PF02036 SCP-2 sterol transfer family 21 121 2.4E-15 T 16-09-2016 IPR003033 SCP2 sterol-binding domain BER92_RS17830 9664862e5c789b1ec179dce8bdcddca9 214 PANTHER PTHR38693 2 214 2.3E-66 T 16-09-2016 BER92_RS14455 3a3fea58e8c68a42a2619b4eda6dbec9 143 PANTHER PTHR31793:SF9 4 142 2.6E-48 T 16-09-2016 BER92_RS14455 3a3fea58e8c68a42a2619b4eda6dbec9 143 PANTHER PTHR31793 4 142 2.6E-48 T 16-09-2016 BER92_RS14455 3a3fea58e8c68a42a2619b4eda6dbec9 143 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 7 130 1.5E-50 T 16-09-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- BER92_RS14455 3a3fea58e8c68a42a2619b4eda6dbec9 143 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 10 113 3.4E-30 T 16-09-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BER92_RS14455 3a3fea58e8c68a42a2619b4eda6dbec9 143 SUPERFAMILY SSF54637 4 135 9.72E-38 T 16-09-2016 IPR029069 HotDog domain BER92_RS14455 3a3fea58e8c68a42a2619b4eda6dbec9 143 Pfam PF03061 Thioesterase superfamily 21 105 3.1E-17 T 16-09-2016 IPR006683 Thioesterase domain BER92_RS14455 3a3fea58e8c68a42a2619b4eda6dbec9 143 Gene3D G3DSA:3.10.129.10 4 135 3.8E-44 T 16-09-2016 IPR029069 HotDog domain BER92_RS14455 3a3fea58e8c68a42a2619b4eda6dbec9 143 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 12 29 - T 16-09-2016 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 BER92_RS14455 3a3fea58e8c68a42a2619b4eda6dbec9 143 PIRSF PIRSF003230 1 140 1.5E-40 T 16-09-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BER92_RS16015 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16015 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS16015 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS03605 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03605 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS03605 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS14525 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14525 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS14525 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS04960 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS04960 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS04960 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS06935 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06935 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS06935 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS19120 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS19120 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS19120 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS00490 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS00490 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS00490 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS01360 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01360 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS01360 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS18500 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS18500 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS18500 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS16140 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16140 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS16140 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS09710 6712550da0eeb6de332caa603aa45da7 156 Pfam PF01609 Transposase DDE domain 1 153 1.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09710 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007:SF0 1 155 2.7E-29 T 16-09-2016 BER92_RS09710 6712550da0eeb6de332caa603aa45da7 156 PANTHER PTHR30007 1 155 2.7E-29 T 16-09-2016 BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 SMART SM00116 343 390 5.1E-7 T 16-09-2016 IPR000644 CBS domain BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 Gene3D G3DSA:3.40.50.1100 42 146 1.2E-36 T 16-09-2016 BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 PANTHER PTHR10314:SF35 3 353 3.0E-131 T 16-09-2016 BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 SUPERFAMILY SSF53686 2 321 2.88E-90 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 302 2.0E-62 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 SUPERFAMILY SSF54631 335 452 6.47E-18 T 16-09-2016 BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 Gene3D G3DSA:3.10.580.10 341 453 2.9E-18 T 16-09-2016 BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 PANTHER PTHR10314 3 353 3.0E-131 T 16-09-2016 BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 Pfam PF00571 CBS domain 341 388 7.8E-7 T 16-09-2016 IPR000644 CBS domain BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 16-09-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 Gene3D G3DSA:3.40.50.1100 152 317 1.7E-56 T 16-09-2016 BER92_RS15700 a685be48b6e6555ee42d32396cb583a9 456 Gene3D G3DSA:3.40.50.1100 2 41 1.7E-56 T 16-09-2016 BER92_RS08065 12620700949c9fabc068108f36383de0 469 Pfam PF00206 Lyase 13 337 1.5E-98 T 16-09-2016 IPR022761 Fumarate lyase, N-terminal BER92_RS08065 12620700949c9fabc068108f36383de0 469 SUPERFAMILY SSF48557 5 455 2.36E-141 T 16-09-2016 IPR008948 L-Aspartase-like GO:0003824 BER92_RS08065 12620700949c9fabc068108f36383de0 469 Gene3D G3DSA:1.20.200.10 134 412 1.8E-90 T 16-09-2016 BER92_RS08065 12620700949c9fabc068108f36383de0 469 PRINTS PR00149 Fumarate lyase superfamily signature 266 293 1.5E-32 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08065 12620700949c9fabc068108f36383de0 469 PRINTS PR00149 Fumarate lyase superfamily signature 312 328 1.5E-32 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08065 12620700949c9fabc068108f36383de0 469 PRINTS PR00149 Fumarate lyase superfamily signature 129 147 1.5E-32 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08065 12620700949c9fabc068108f36383de0 469 PRINTS PR00149 Fumarate lyase superfamily signature 175 193 1.5E-32 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08065 12620700949c9fabc068108f36383de0 469 Hamap MF_00743 Fumarate hydratase class II [fumC]. 5 457 78.249 T 16-09-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS08065 12620700949c9fabc068108f36383de0 469 PANTHER PTHR11444:SF22 1 451 0.0 T 16-09-2016 BER92_RS08065 12620700949c9fabc068108f36383de0 469 Gene3D G3DSA:1.10.40.30 413 459 1.3E-20 T 16-09-2016 BER92_RS08065 12620700949c9fabc068108f36383de0 469 Pfam PF10415 Fumarase C C-terminus 403 456 3.9E-19 T 16-09-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS08065 12620700949c9fabc068108f36383de0 469 Gene3D G3DSA:1.10.275.10 4 133 2.6E-51 T 16-09-2016 IPR024083 Fumarase/histidase, N-terminal BER92_RS08065 12620700949c9fabc068108f36383de0 469 ProSitePatterns PS00163 Fumarate lyases signature. 312 321 - T 16-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 BER92_RS08065 12620700949c9fabc068108f36383de0 469 PANTHER PTHR11444 1 451 0.0 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08065 12620700949c9fabc068108f36383de0 469 PRINTS PR00145 Argininosuccinate lyase family signature 128 150 1.5E-5 T 16-09-2016 BER92_RS08065 12620700949c9fabc068108f36383de0 469 PRINTS PR00145 Argininosuccinate lyase family signature 312 328 1.5E-5 T 16-09-2016 BER92_RS08065 12620700949c9fabc068108f36383de0 469 PRINTS PR00145 Argininosuccinate lyase family signature 170 190 1.5E-5 T 16-09-2016 BER92_RS13605 375d5f2ecaaaa2e930682842c5d6a26a 352 Pfam PF00586 AIR synthase related protein, N-terminal domain 66 168 1.1E-13 T 16-09-2016 IPR016188 PurM-like, N-terminal domain BER92_RS13605 375d5f2ecaaaa2e930682842c5d6a26a 352 Pfam PF02769 AIR synthase related protein, C-terminal domain 181 346 8.6E-36 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS13605 375d5f2ecaaaa2e930682842c5d6a26a 352 SUPERFAMILY SSF56042 176 347 3.29E-55 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS13605 375d5f2ecaaaa2e930682842c5d6a26a 352 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 12 351 45.743 T 16-09-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS13605 375d5f2ecaaaa2e930682842c5d6a26a 352 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 12 341 5.3E-135 T 16-09-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS13605 375d5f2ecaaaa2e930682842c5d6a26a 352 Gene3D G3DSA:3.90.650.10 176 348 4.6E-62 T 16-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain BER92_RS13605 375d5f2ecaaaa2e930682842c5d6a26a 352 SUPERFAMILY SSF55326 12 174 8.37E-53 T 16-09-2016 BER92_RS13605 375d5f2ecaaaa2e930682842c5d6a26a 352 PANTHER PTHR10520 12 341 4.8E-196 T 16-09-2016 BER92_RS13605 375d5f2ecaaaa2e930682842c5d6a26a 352 Gene3D G3DSA:3.30.1330.10 27 174 8.3E-63 T 16-09-2016 IPR016188 PurM-like, N-terminal domain BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 PANTHER PTHR21621 1 312 1.4E-144 T 16-09-2016 BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 PANTHER PTHR21621:SF4 1 312 1.4E-144 T 16-09-2016 BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 TIGRFAM TIGR01380 glut_syn: glutathione synthase 3 312 3.2E-134 T 16-09-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 Gene3D G3DSA:3.30.1490.20 138 192 1.4E-24 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 Hamap MF_00162 Glutathione synthetase [gshB]. 1 316 152.693 T 16-09-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 125 297 6.4E-72 T 16-09-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 SUPERFAMILY SSF56059 124 311 1.02E-52 T 16-09-2016 BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 3 121 8.3E-38 T 16-09-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 SUPERFAMILY SSF52440 3 123 9.49E-38 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 Gene3D G3DSA:3.30.470.20 193 300 6.1E-46 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS04160 cec14c0ba15b4145ad58222c7036f7ef 316 Gene3D G3DSA:3.40.50.20 3 130 5.9E-46 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS16610 abd00b11d520f6cf4e3a584ebd73b7ce 572 PANTHER PTHR11371 1 572 5.4E-173 T 16-09-2016 IPR016202 Deoxyribonuclease I GO:0004536|GO:0006308 BER92_RS16610 abd00b11d520f6cf4e3a584ebd73b7ce 572 Gene3D G3DSA:3.60.10.10 273 568 5.8E-25 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS16610 abd00b11d520f6cf4e3a584ebd73b7ce 572 PANTHER PTHR11371:SF31 1 572 5.4E-173 T 16-09-2016 BER92_RS16610 abd00b11d520f6cf4e3a584ebd73b7ce 572 SUPERFAMILY SSF56219 271 571 5.04E-35 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS16610 abd00b11d520f6cf4e3a584ebd73b7ce 572 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 278 534 5.5E-11 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS06005 b5aa576b98d1d5e292a5ff9fb685cd9b 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 2.9E-18 T 16-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BER92_RS06005 b5aa576b98d1d5e292a5ff9fb685cd9b 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 2.9E-18 T 16-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BER92_RS06005 b5aa576b98d1d5e292a5ff9fb685cd9b 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 2.9E-18 T 16-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BER92_RS06005 b5aa576b98d1d5e292a5ff9fb685cd9b 65 Pfam PF01632 Ribosomal protein L35 2 62 9.1E-25 T 16-09-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS06005 b5aa576b98d1d5e292a5ff9fb685cd9b 65 PANTHER PTHR33343 1 65 2.0E-26 T 16-09-2016 BER92_RS06005 b5aa576b98d1d5e292a5ff9fb685cd9b 65 SUPERFAMILY SSF143034 2 64 3.4E-23 T 16-09-2016 BER92_RS06005 b5aa576b98d1d5e292a5ff9fb685cd9b 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.741 T 16-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BER92_RS06005 b5aa576b98d1d5e292a5ff9fb685cd9b 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 9.7E-26 T 16-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BER92_RS06005 b5aa576b98d1d5e292a5ff9fb685cd9b 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 16-09-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS11485 cee96e32af6cd4994a79eaa800468e90 472 Gene3D G3DSA:3.40.30.10 7 140 1.6E-19 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS11485 cee96e32af6cd4994a79eaa800468e90 472 Gene3D G3DSA:2.120.10.30 163 460 2.5E-40 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS11485 cee96e32af6cd4994a79eaa800468e90 472 PANTHER PTHR13833:SF38 1 472 9.3E-120 T 16-09-2016 BER92_RS11485 cee96e32af6cd4994a79eaa800468e90 472 Pfam PF01436 NHL repeat 166 189 3.2E-4 T 16-09-2016 IPR001258 NHL repeat GO:0005515 BER92_RS11485 cee96e32af6cd4994a79eaa800468e90 472 Pfam PF01436 NHL repeat 219 243 6.4E-5 T 16-09-2016 IPR001258 NHL repeat GO:0005515 BER92_RS11485 cee96e32af6cd4994a79eaa800468e90 472 PANTHER PTHR13833 1 472 9.3E-120 T 16-09-2016 BER92_RS11485 cee96e32af6cd4994a79eaa800468e90 472 SUPERFAMILY SSF101898 166 463 1.94E-29 T 16-09-2016 BER92_RS11485 cee96e32af6cd4994a79eaa800468e90 472 SUPERFAMILY SSF52833 14 147 1.08E-18 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04075 9a4c74416012368a0e128e2c2105e889 134 Pfam PF00072 Response regulator receiver domain 10 120 4.9E-12 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04075 9a4c74416012368a0e128e2c2105e889 134 SUPERFAMILY SSF52172 8 128 3.84E-22 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS04075 9a4c74416012368a0e128e2c2105e889 134 SMART SM00448 8 119 1.3E-10 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04075 9a4c74416012368a0e128e2c2105e889 134 PANTHER PTHR26402 8 129 1.5E-18 T 16-09-2016 BER92_RS04075 9a4c74416012368a0e128e2c2105e889 134 Gene3D G3DSA:3.40.50.2300 7 127 2.5E-25 T 16-09-2016 BER92_RS12475 74690223bf92bbf20a9d01d00c3fe5fa 455 PANTHER PTHR33803:SF1 1 361 2.0E-250 T 16-09-2016 BER92_RS12475 74690223bf92bbf20a9d01d00c3fe5fa 455 PANTHER PTHR33803 1 361 2.0E-250 T 16-09-2016 BER92_RS12475 74690223bf92bbf20a9d01d00c3fe5fa 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS07455 7659e273a3b9142975d70fa02a6c3b1d 434 Pfam PF04286 Protein of unknown function (DUF445) 55 431 9.1E-105 T 16-09-2016 IPR007383 Protein of unknown function DUF445 BER92_RS07455 7659e273a3b9142975d70fa02a6c3b1d 434 PANTHER PTHR38442 1 434 2.9E-163 T 16-09-2016 BER92_RS14425 675a0e2a5363fc6ffb26c8cd7f74273d 269 PANTHER PTHR26312:SF74 156 267 8.4E-19 T 16-09-2016 BER92_RS14425 675a0e2a5363fc6ffb26c8cd7f74273d 269 Pfam PF13525 Outer membrane lipoprotein 144 266 3.0E-13 T 16-09-2016 BER92_RS14425 675a0e2a5363fc6ffb26c8cd7f74273d 269 SUPERFAMILY SSF48452 146 259 1.58E-13 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS14425 675a0e2a5363fc6ffb26c8cd7f74273d 269 PANTHER PTHR26312 156 267 8.4E-19 T 16-09-2016 BER92_RS14425 675a0e2a5363fc6ffb26c8cd7f74273d 269 Gene3D G3DSA:1.25.40.10 148 255 3.7E-12 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS14425 675a0e2a5363fc6ffb26c8cd7f74273d 269 Pfam PF16331 TolA binding protein trimerisation 26 99 1.1E-18 T 16-09-2016 IPR032519 YbgF, trimerisation domain GO:0070206 BER92_RS14425 675a0e2a5363fc6ffb26c8cd7f74273d 269 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 144 262 1.1E-39 T 16-09-2016 IPR014162 Tol-Pal system, YbgF BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 Pfam PF01084 Ribosomal protein S18 18 68 1.4E-24 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 1.1E-35 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.026 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 16-09-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 PANTHER PTHR13479 3 74 3.0E-30 T 16-09-2016 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 4.0E-23 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 SUPERFAMILY SSF46911 3 74 1.26E-28 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 Gene3D G3DSA:4.10.640.10 8 74 7.6E-32 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.5E-17 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.5E-17 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.5E-17 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS08450 d579821443c977e1b5f5aa0b37ff2a0f 76 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.5E-17 T 16-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS06730 c8bb1f2b513f5936b797652e8bd5fc24 228 Pfam PF13276 HTH-like domain 26 79 2.6E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS06730 c8bb1f2b513f5936b797652e8bd5fc24 228 PANTHER PTHR32552 1 223 7.6E-78 T 16-09-2016 BER92_RS06730 c8bb1f2b513f5936b797652e8bd5fc24 228 Gene3D G3DSA:3.30.420.10 101 223 3.6E-29 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS06730 c8bb1f2b513f5936b797652e8bd5fc24 228 SUPERFAMILY SSF53098 100 223 1.26E-35 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS06730 c8bb1f2b513f5936b797652e8bd5fc24 228 Pfam PF00665 Integrase core domain 107 221 1.2E-31 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS03145 4683ad5210a4e4c2035d86f1d4f7f8e0 820 PANTHER PTHR32552 4 354 1.2E-33 T 16-09-2016 BER92_RS03145 4683ad5210a4e4c2035d86f1d4f7f8e0 820 PANTHER PTHR32552 419 537 1.2E-33 T 16-09-2016 BER92_RS03145 4683ad5210a4e4c2035d86f1d4f7f8e0 820 PANTHER PTHR32552 564 820 1.2E-33 T 16-09-2016 BER92_RS03145 4683ad5210a4e4c2035d86f1d4f7f8e0 820 Gene3D G3DSA:2.170.130.10 42 178 1.0E-27 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS03145 4683ad5210a4e4c2035d86f1d4f7f8e0 820 SUPERFAMILY SSF56935 569 820 7.79E-87 T 16-09-2016 BER92_RS03145 4683ad5210a4e4c2035d86f1d4f7f8e0 820 SUPERFAMILY SSF56935 41 540 7.79E-87 T 16-09-2016 BER92_RS03145 4683ad5210a4e4c2035d86f1d4f7f8e0 820 Gene3D G3DSA:2.40.170.20 179 820 6.4E-54 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03145 4683ad5210a4e4c2035d86f1d4f7f8e0 820 Pfam PF00593 TonB dependent receptor 580 818 8.7E-19 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03145 4683ad5210a4e4c2035d86f1d4f7f8e0 820 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 177 1.9E-17 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS14620 cd61313479e4488a3a75496b121d0d02 158 PANTHER PTHR30007 2 157 5.1E-28 T 16-09-2016 BER92_RS14620 cd61313479e4488a3a75496b121d0d02 158 PANTHER PTHR30007:SF0 2 157 5.1E-28 T 16-09-2016 BER92_RS14620 cd61313479e4488a3a75496b121d0d02 158 Pfam PF01609 Transposase DDE domain 1 155 9.1E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10565 cd61313479e4488a3a75496b121d0d02 158 PANTHER PTHR30007 2 157 5.1E-28 T 16-09-2016 BER92_RS10565 cd61313479e4488a3a75496b121d0d02 158 PANTHER PTHR30007:SF0 2 157 5.1E-28 T 16-09-2016 BER92_RS10565 cd61313479e4488a3a75496b121d0d02 158 Pfam PF01609 Transposase DDE domain 1 155 9.1E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 PANTHER PTHR15184 171 336 4.4E-189 T 16-09-2016 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 TIGRFAM TIGR00767 rho: transcription termination factor Rho 196 612 4.1E-204 T 16-09-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 Pfam PF07498 Rho termination factor, N-terminal domain 199 242 5.7E-13 T 16-09-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 PANTHER PTHR15184:SF34 171 336 4.4E-189 T 16-09-2016 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 SUPERFAMILY SSF50249 245 318 1.26E-23 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 SMART SM00357 247 313 3.0E-12 T 16-09-2016 IPR011129 Cold shock protein GO:0003676 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 PANTHER PTHR15184:SF34 355 598 4.4E-189 T 16-09-2016 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 PANTHER PTHR15184 355 598 4.4E-189 T 16-09-2016 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 Gene3D G3DSA:3.40.50.300 327 612 9.0E-105 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 SUPERFAMILY SSF68912 196 241 7.85E-7 T 16-09-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 SMART SM00382 365 545 1.9E-6 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 SUPERFAMILY SSF52540 287 566 5.2E-66 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 SMART SM00959 199 242 1.2E-11 T 16-09-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 Gene3D G3DSA:2.40.50.140 245 311 1.4E-28 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 Pfam PF07497 Rho termination factor, RNA-binding domain 247 319 5.3E-26 T 16-09-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 Gene3D G3DSA:1.10.720.10 195 242 9.9E-16 T 16-09-2016 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 355 558 9.2E-22 T 16-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS00245 5af2e4836788b8b589bd3c528e0d58c4 613 Hamap MF_01884 Transcription termination factor Rho [rho]. 195 613 226.103 T 16-09-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 Pfam PF13242 HAD-hyrolase-like 102 153 1.2E-4 T 16-09-2016 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 Gene3D G3DSA:3.30.230.40 278 375 9.6E-33 T 16-09-2016 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 147 3.3E-20 T 16-09-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 164 1.9E-69 T 16-09-2016 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15|UniPathway: UPA00031|UniPathway: UPA00031 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 PANTHER PTHR23133 165 260 9.3E-161 T 16-09-2016 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 198 357 3.7E-64 T 16-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 SUPERFAMILY SSF54211 278 362 5.82E-31 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 PANTHER PTHR23133:SF2 9 95 9.3E-161 T 16-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 143 2.0E-34 T 16-09-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 SUPERFAMILY SSF54211 169 253 2.28E-30 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 PANTHER PTHR23133 9 95 9.3E-161 T 16-09-2016 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 PANTHER PTHR23133 278 375 9.3E-161 T 16-09-2016 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 1 375 52.784 T 16-09-2016 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15|UniPathway: UPA00031|UniPathway: UPA00031 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 Gene3D G3DSA:3.30.230.40 169 255 2.1E-37 T 16-09-2016 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 PANTHER PTHR23133:SF2 165 260 9.3E-161 T 16-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 PANTHER PTHR23133:SF2 278 375 9.3E-161 T 16-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 339 351 - T 16-09-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 169 375 36.169 T 16-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 Gene3D G3DSA:3.40.50.1000 3 166 4.9E-33 T 16-09-2016 IPR023214 HAD-like domain BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 SUPERFAMILY SSF56784 1 148 4.33E-31 T 16-09-2016 IPR023214 HAD-like domain BER92_RS09215 abc2e1d51520e40b0f3cba41f712c8c4 375 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 228 241 - T 16-09-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 SUPERFAMILY SSF100879 238 338 2.35E-20 T 16-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 Gene3D G3DSA:1.10.150.20 165 234 5.0E-24 T 16-09-2016 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 PANTHER PTHR11076 1 348 2.1E-144 T 16-09-2016 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 Hamap MF_01113 DNA polymerase IV [dinB]. 1 351 37.872 T 16-09-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 Pfam PF11799 impB/mucB/samB family C-terminal domain 234 346 1.2E-15 T 16-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 Gene3D G3DSA:3.30.70.270 65 163 3.6E-36 T 16-09-2016 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 Pfam PF11798 IMS family HHH motif 165 196 9.6E-7 T 16-09-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 Gene3D G3DSA:3.30.1490.100 240 345 1.2E-23 T 16-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 Pfam PF00817 impB/mucB/samB family 7 153 1.7E-53 T 16-09-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS15790 6b516dc64631193d45cd2d92cb1d1aad 359 SUPERFAMILY SSF56672 1 233 8.81E-94 T 16-09-2016 BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 236 4.3E-33 T 16-09-2016 BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.0E-15 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.0E-15 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.0E-15 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.0E-15 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 Gene3D G3DSA:3.40.50.720 2 240 2.6E-52 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 PANTHER PTHR24322 163 194 3.3E-83 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 PANTHER PTHR24322 10 145 3.3E-83 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 SUPERFAMILY SSF51735 1 242 1.66E-50 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 PANTHER PTHR24322:SF554 163 194 3.3E-83 T 16-09-2016 BER92_RS03455 96c655fe76eda5f82d1933e602c6dfe6 271 PANTHER PTHR24322:SF554 10 145 3.3E-83 T 16-09-2016 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 SUPERFAMILY SSF47005 117 163 1.15E-8 T 16-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 PANTHER PTHR23151:SF47 3 404 4.5E-234 T 16-09-2016 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 174 401 1.8E-83 T 16-09-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 Pfam PF02817 e3 binding domain 127 157 1.2E-6 T 16-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 403 1.4E-175 T 16-09-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 Gene3D G3DSA:4.10.320.10 127 165 1.2E-10 T 16-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 Pfam PF00364 Biotin-requiring enzyme 4 76 5.4E-19 T 16-09-2016 IPR000089 Biotin/lipoyl attachment BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 PANTHER PTHR23151 3 404 4.5E-234 T 16-09-2016 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 SUPERFAMILY SSF52777 174 402 6.23E-88 T 16-09-2016 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 Gene3D G3DSA:3.30.559.10 171 401 1.9E-93 T 16-09-2016 IPR023213 Chloramphenicol acetyltransferase-like domain BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 16-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 Gene3D G3DSA:2.40.50.100 1 93 7.4E-27 T 16-09-2016 BER92_RS08040 7fb9ab1348b224b2216379a1c94b01ff 404 SUPERFAMILY SSF51230 1 93 1.02E-25 T 16-09-2016 IPR011053 Single hybrid motif BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 5 789 0.0 T 16-09-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 SUPERFAMILY SSF51621 463 790 5.5E-95 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 SUPERFAMILY SSF52009 353 465 7.46E-32 T 16-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 711 726 2.9E-6 T 16-09-2016 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 694 709 2.9E-6 T 16-09-2016 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 747 759 2.9E-6 T 16-09-2016 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 18 344 9.9E-112 T 16-09-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 PANTHER PTHR22931:SF7 2 791 0.0 T 16-09-2016 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 384 455 2.0E-24 T 16-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 SUPERFAMILY SSF56059 3 384 2.83E-101 T 16-09-2016 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 PIRSF PIRSF000854 1 792 0.0 T 16-09-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 Gene3D G3DSA:3.30.470.20 199 352 2.1E-55 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 482 788 1.7E-60 T 16-09-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 694 712 - T 16-09-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 Gene3D G3DSA:3.50.30.10 373 468 1.1E-33 T 16-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 Gene3D G3DSA:3.20.20.60 481 789 7.3E-104 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 PANTHER PTHR22931 2 791 0.0 T 16-09-2016 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 Gene3D G3DSA:3.30.1490.20 3 194 9.3E-66 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS11720 3fd5a4f646e95e343e7bd9f3be9d9231 792 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 414 425 - T 16-09-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 BER92_RS08410 b33f5a8b4bad6fecf6fae5869512163f 220 PANTHER PTHR11002:SF20 1 208 1.5E-124 T 16-09-2016 BER92_RS08410 b33f5a8b4bad6fecf6fae5869512163f 220 Pfam PF00484 Carbonic anhydrase 37 189 7.3E-49 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08410 b33f5a8b4bad6fecf6fae5869512163f 220 PANTHER PTHR11002 1 208 1.5E-124 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08410 b33f5a8b4bad6fecf6fae5869512163f 220 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 16-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08410 b33f5a8b4bad6fecf6fae5869512163f 220 SUPERFAMILY SSF53056 1 212 1.96E-75 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08410 b33f5a8b4bad6fecf6fae5869512163f 220 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 16-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08410 b33f5a8b4bad6fecf6fae5869512163f 220 SMART SM00947 30 193 6.1E-65 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08410 b33f5a8b4bad6fecf6fae5869512163f 220 Gene3D G3DSA:3.40.1050.10 1 216 2.1E-74 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS04120 c621816f114cf9e188541017097a4812 727 Pfam PF04607 Region found in RelA / SpoT proteins 248 358 1.3E-37 T 16-09-2016 IPR007685 RelA/SpoT GO:0015969 BER92_RS04120 c621816f114cf9e188541017097a4812 727 SMART SM00954 248 358 8.5E-68 T 16-09-2016 IPR007685 RelA/SpoT GO:0015969 BER92_RS04120 c621816f114cf9e188541017097a4812 727 PANTHER PTHR21262 57 727 0.0 T 16-09-2016 BER92_RS04120 c621816f114cf9e188541017097a4812 727 Pfam PF02824 TGS domain 401 459 6.5E-20 T 16-09-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 BER92_RS04120 c621816f114cf9e188541017097a4812 727 Gene3D G3DSA:3.10.20.30 400 461 2.0E-21 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS04120 c621816f114cf9e188541017097a4812 727 SUPERFAMILY SSF81271 395 459 6.98E-19 T 16-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BER92_RS04120 c621816f114cf9e188541017097a4812 727 Pfam PF13328 HD domain 60 189 3.4E-18 T 16-09-2016 IPR003607 HD/PDEase domain BER92_RS04120 c621816f114cf9e188541017097a4812 727 Gene3D G3DSA:3.30.70.260 649 724 6.3E-11 T 16-09-2016 BER92_RS04120 c621816f114cf9e188541017097a4812 727 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 69 724 8.2E-162 T 16-09-2016 IPR004811 RelA/SpoT family GO:0015969 BER92_RS04120 c621816f114cf9e188541017097a4812 727 SUPERFAMILY SSF55021 650 725 3.46E-8 T 16-09-2016 BER92_RS04120 c621816f114cf9e188541017097a4812 727 SUPERFAMILY SSF109604 37 203 9.42E-23 T 16-09-2016 BER92_RS04120 c621816f114cf9e188541017097a4812 727 Gene3D G3DSA:3.30.460.10 190 337 1.7E-51 T 16-09-2016 BER92_RS04120 c621816f114cf9e188541017097a4812 727 Pfam PF13291 ACT domain 648 725 8.8E-19 T 16-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 BER92_RS04120 c621816f114cf9e188541017097a4812 727 PANTHER PTHR21262:SF5 57 727 0.0 T 16-09-2016 BER92_RS04120 c621816f114cf9e188541017097a4812 727 SUPERFAMILY SSF81301 205 377 5.72E-64 T 16-09-2016 BER92_RS13790 eabfbd8de644c1a476744f0d6d8c6e61 289 Pfam PF13276 HTH-like domain 46 97 2.6E-10 T 16-09-2016 IPR025948 HTH-like domain BER92_RS13790 eabfbd8de644c1a476744f0d6d8c6e61 289 PANTHER PTHR24559:SF185 189 286 1.3E-86 T 16-09-2016 BER92_RS13790 eabfbd8de644c1a476744f0d6d8c6e61 289 PANTHER PTHR24559:SF185 28 123 1.3E-86 T 16-09-2016 BER92_RS13790 eabfbd8de644c1a476744f0d6d8c6e61 289 SUPERFAMILY SSF53098 190 276 5.77E-19 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS13790 eabfbd8de644c1a476744f0d6d8c6e61 289 PANTHER PTHR24559 28 123 1.3E-86 T 16-09-2016 BER92_RS13790 eabfbd8de644c1a476744f0d6d8c6e61 289 Pfam PF13683 Integrase core domain 207 272 4.8E-27 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS13790 eabfbd8de644c1a476744f0d6d8c6e61 289 Gene3D G3DSA:3.30.420.10 190 273 2.8E-20 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS13790 eabfbd8de644c1a476744f0d6d8c6e61 289 PANTHER PTHR24559 189 286 1.3E-86 T 16-09-2016 BER92_RS05385 a423bfca1ac3ab22ac94163e28665a73 626 Pfam PF13356 Domain of unknown function (DUF4102) 2 86 6.5E-18 T 16-09-2016 IPR025166 Domain of unknown function DUF4102 BER92_RS05385 a423bfca1ac3ab22ac94163e28665a73 626 PANTHER PTHR30629:SF4 1 432 3.8E-133 T 16-09-2016 BER92_RS05385 a423bfca1ac3ab22ac94163e28665a73 626 Gene3D G3DSA:1.10.443.10 215 397 9.4E-23 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS05385 a423bfca1ac3ab22ac94163e28665a73 626 PANTHER PTHR30629 1 432 3.8E-133 T 16-09-2016 BER92_RS05385 a423bfca1ac3ab22ac94163e28665a73 626 SUPERFAMILY SSF56349 97 399 7.65E-47 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS05385 a423bfca1ac3ab22ac94163e28665a73 626 Gene3D G3DSA:1.10.150.130 97 181 1.9E-8 T 16-09-2016 IPR023109 Integrase/recombinase, N-terminal BER92_RS05385 a423bfca1ac3ab22ac94163e28665a73 626 Pfam PF00589 Phage integrase family 215 389 7.7E-18 T 16-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS08185 3f5a3886784a7e8f56cff2666f9ae1a6 379 PANTHER PTHR21091:SF111 23 54 1.0E-219 T 16-09-2016 BER92_RS08185 3f5a3886784a7e8f56cff2666f9ae1a6 379 SUPERFAMILY SSF82282 29 56 1.18E-99 T 16-09-2016 IPR003726 Homocysteine-binding domain BER92_RS08185 3f5a3886784a7e8f56cff2666f9ae1a6 379 SUPERFAMILY SSF82282 89 374 1.18E-99 T 16-09-2016 IPR003726 Homocysteine-binding domain BER92_RS08185 3f5a3886784a7e8f56cff2666f9ae1a6 379 Gene3D G3DSA:3.20.20.330 26 56 7.9E-117 T 16-09-2016 IPR003726 Homocysteine-binding domain BER92_RS08185 3f5a3886784a7e8f56cff2666f9ae1a6 379 Gene3D G3DSA:3.20.20.330 89 373 7.9E-117 T 16-09-2016 IPR003726 Homocysteine-binding domain BER92_RS08185 3f5a3886784a7e8f56cff2666f9ae1a6 379 PANTHER PTHR21091 86 372 1.0E-219 T 16-09-2016 BER92_RS08185 3f5a3886784a7e8f56cff2666f9ae1a6 379 PANTHER PTHR21091 23 54 1.0E-219 T 16-09-2016 BER92_RS08185 3f5a3886784a7e8f56cff2666f9ae1a6 379 Pfam PF02574 Homocysteine S-methyltransferase 37 363 2.4E-94 T 16-09-2016 IPR003726 Homocysteine-binding domain BER92_RS08185 3f5a3886784a7e8f56cff2666f9ae1a6 379 PANTHER PTHR21091:SF111 86 372 1.0E-219 T 16-09-2016 BER92_RS11545 9f613fb0eb2581e107a780ae64268e2c 82 Pfam PF03937 Flavinator of succinate dehydrogenase 8 77 1.1E-23 T 16-09-2016 IPR005631 Flavinator of succinate dehydrogenase BER92_RS11545 9f613fb0eb2581e107a780ae64268e2c 82 SUPERFAMILY SSF109910 4 79 9.29E-23 T 16-09-2016 IPR005631 Flavinator of succinate dehydrogenase BER92_RS11545 9f613fb0eb2581e107a780ae64268e2c 82 PANTHER PTHR39585 2 82 4.3E-32 T 16-09-2016 BER92_RS11545 9f613fb0eb2581e107a780ae64268e2c 82 PANTHER PTHR39585:SF1 2 82 4.3E-32 T 16-09-2016 BER92_RS11545 9f613fb0eb2581e107a780ae64268e2c 82 Gene3D G3DSA:1.10.150.250 2 79 5.6E-27 T 16-09-2016 IPR005631 Flavinator of succinate dehydrogenase BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PANTHER PTHR24321:SF5 12 256 2.6E-179 T 16-09-2016 BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 Gene3D G3DSA:3.40.50.720 12 255 1.3E-77 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 SUPERFAMILY SSF51735 14 255 6.67E-73 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 6.1E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.1E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 6.1E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 2.8E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.8E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 2.8E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.8E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.8E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.8E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 255 2.4E-62 T 16-09-2016 BER92_RS01130 dadfde473ea9dad37ca8b4e030125f82 256 PANTHER PTHR24321 12 256 2.6E-179 T 16-09-2016 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 SUPERFAMILY SSF52440 1 103 5.18E-36 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 42.298 T 16-09-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 Gene3D G3DSA:3.90.600.10 331 423 4.0E-28 T 16-09-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 421 5.2E-23 T 16-09-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 SUPERFAMILY SSF51246 329 424 2.43E-26 T 16-09-2016 IPR011054 Rudiment single hybrid motif BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 PANTHER PTHR10520 1 426 9.5E-272 T 16-09-2016 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 SMART SM01209 103 296 1.1E-139 T 16-09-2016 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 Gene3D G3DSA:3.30.1490.20 122 190 7.3E-32 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 Gene3D G3DSA:3.30.470.20 191 328 1.7E-62 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 SUPERFAMILY SSF56059 104 324 6.19E-67 T 16-09-2016 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 7.7E-172 T 16-09-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 Gene3D G3DSA:3.40.50.20 2 95 1.5E-37 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 16-09-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 SMART SM01210 330 423 4.8E-43 T 16-09-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 2.1E-81 T 16-09-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS16310 2e867ddb1af1b92a3bcd4cef0861e013 431 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 2.1E-34 T 16-09-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 PIRSF PIRSF000149 1 333 8.7E-130 T 16-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 1.6E-133 T 16-09-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 314 1.4E-65 T 16-09-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 152 7.8E-61 T 16-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 Gene3D G3DSA:3.40.50.720 3 160 1.9E-79 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 PANTHER PTHR10836 1 333 1.5E-230 T 16-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 SMART SM00846 3 152 1.6E-98 T 16-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 SUPERFAMILY SSF55347 151 314 4.17E-74 T 16-09-2016 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 3.9E-47 T 16-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 3.9E-47 T 16-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 3.9E-47 T 16-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 3.9E-47 T 16-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 3.9E-47 T 16-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 SUPERFAMILY SSF51735 3 168 8.12E-68 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 Gene3D G3DSA:3.30.360.10 161 316 3.5E-81 T 16-09-2016 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 16-09-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 BER92_RS16890 af8e18e265626e3d549b7d41d8a4a7ef 333 PANTHER PTHR10836:SF31 1 333 1.5E-230 T 16-09-2016 BER92_RS07300 25cfb38ee01e36cfde16aac29603b5f7 500 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 494 2.2E-195 T 16-09-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 BER92_RS07300 25cfb38ee01e36cfde16aac29603b5f7 500 Pfam PF00361 Proton-conducting membrane transporter 128 428 9.6E-78 T 16-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 BER92_RS07300 25cfb38ee01e36cfde16aac29603b5f7 500 PANTHER PTHR22773:SF40 1 498 1.1E-211 T 16-09-2016 BER92_RS07300 25cfb38ee01e36cfde16aac29603b5f7 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 233 257 3.9E-40 T 16-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 BER92_RS07300 25cfb38ee01e36cfde16aac29603b5f7 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 164 188 3.9E-40 T 16-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 BER92_RS07300 25cfb38ee01e36cfde16aac29603b5f7 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 134 153 3.9E-40 T 16-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 BER92_RS07300 25cfb38ee01e36cfde16aac29603b5f7 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 385 411 3.9E-40 T 16-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 BER92_RS07300 25cfb38ee01e36cfde16aac29603b5f7 500 PANTHER PTHR22773 1 498 1.1E-211 T 16-09-2016 BER92_RS01700 1aef6d16804adeed061342a7f4a93898 95 SUPERFAMILY SSF54637 4 93 1.37E-15 T 16-09-2016 IPR029069 HotDog domain BER92_RS01700 1aef6d16804adeed061342a7f4a93898 95 Gene3D G3DSA:3.10.129.10 5 93 2.5E-14 T 16-09-2016 IPR029069 HotDog domain BER92_RS01700 1aef6d16804adeed061342a7f4a93898 95 Pfam PF07977 FabA-like domain 6 92 4.4E-7 T 16-09-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 241 325 2.3E-9 T 16-09-2016 IPR023885 4Fe4S-binding SPASM domain BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 SUPERFAMILY SSF102114 6 313 1.02E-68 T 16-09-2016 BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 PIRSF PIRSF037420 1 352 1.8E-120 T 16-09-2016 IPR017200 Coenzyme PQQ synthesis protein E UniPathway: UPA00539 BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 Pfam PF13186 Iron-sulfur cluster-binding domain 238 304 1.0E-11 T 16-09-2016 IPR023885 4Fe4S-binding SPASM domain BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 PANTHER PTHR11228:SF32 6 341 4.1E-117 T 16-09-2016 BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 Pfam PF13353 4Fe-4S single cluster domain 14 91 1.1E-4 T 16-09-2016 BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 Gene3D G3DSA:3.20.20.70 5 322 6.0E-66 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 PANTHER PTHR11228 6 341 4.1E-117 T 16-09-2016 BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 Pfam PF04055 Radical SAM superfamily 13 157 3.9E-17 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 5 358 6.0E-160 T 16-09-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 BER92_RS04100 7706ac119a81a7ae983278c79b517914 375 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 370 174.807 T 16-09-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 BER92_RS10160 657812e0b762a9525edae75ee3d43004 72 SUPERFAMILY SSF50249 1 70 4.86E-28 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS10160 657812e0b762a9525edae75ee3d43004 72 SMART SM00316 4 72 3.3E-5 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS10160 657812e0b762a9525edae75ee3d43004 72 PANTHER PTHR33370 1 72 3.4E-47 T 16-09-2016 BER92_RS10160 657812e0b762a9525edae75ee3d43004 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.423 T 16-09-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 BER92_RS10160 657812e0b762a9525edae75ee3d43004 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 5.0E-37 T 16-09-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 BER92_RS10160 657812e0b762a9525edae75ee3d43004 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 2.2E-28 T 16-09-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 BER92_RS10160 657812e0b762a9525edae75ee3d43004 72 Gene3D G3DSA:2.40.50.140 1 72 6.1E-40 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 353 363 - T 16-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 387 485 4.2E-12 T 16-09-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 SUPERFAMILY SSF54373 229 322 3.92E-5 T 16-09-2016 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 10 27 - T 16-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 Pfam PF01266 FAD dependent oxidoreductase 6 326 5.9E-44 T 16-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 34 46 3.0E-29 T 16-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 5 17 3.0E-29 T 16-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 18 28 3.0E-29 T 16-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 348 360 3.0E-29 T 16-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 316 322 3.0E-29 T 16-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 79 91 3.0E-29 T 16-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 SUPERFAMILY SSF51905 1 263 2.81E-32 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 SUPERFAMILY SSF51905 315 376 2.81E-32 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 PANTHER PTHR11985 3 484 5.4E-182 T 16-09-2016 BER92_RS17745 c6c0c06b7e849f128767472c7a7613bd 503 Gene3D G3DSA:3.50.50.60 4 259 3.1E-34 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01405 cb340e49499913f893f31508939e814c 245 PANTHER PTHR12725 5 227 2.6E-65 T 16-09-2016 BER92_RS01405 cb340e49499913f893f31508939e814c 245 SUPERFAMILY SSF56784 5 228 3.98E-43 T 16-09-2016 IPR023214 HAD-like domain BER92_RS01405 cb340e49499913f893f31508939e814c 245 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 142 158 9.5E-5 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS01405 cb340e49499913f893f31508939e814c 245 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 9.5E-5 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS01405 cb340e49499913f893f31508939e814c 245 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 188 201 9.5E-5 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS01405 cb340e49499913f893f31508939e814c 245 PANTHER PTHR12725:SF65 5 227 2.6E-65 T 16-09-2016 BER92_RS01405 cb340e49499913f893f31508939e814c 245 Gene3D G3DSA:3.40.50.1000 97 228 3.4E-34 T 16-09-2016 IPR023214 HAD-like domain BER92_RS01405 cb340e49499913f893f31508939e814c 245 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 81 199 3.9E-8 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS01405 cb340e49499913f893f31508939e814c 245 Pfam PF00702 haloacid dehalogenase-like hydrolase 5 193 2.7E-12 T 16-09-2016 BER92_RS01405 cb340e49499913f893f31508939e814c 245 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 88 193 5.0E-12 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS05875 def810cddc417e9cd40b786518e6097c 217 SUPERFAMILY SSF101874 24 192 1.57E-45 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS05875 def810cddc417e9cd40b786518e6097c 217 Pfam PF04264 YceI-like domain 27 190 3.5E-36 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS05875 def810cddc417e9cd40b786518e6097c 217 PANTHER PTHR34406 5 199 2.8E-60 T 16-09-2016 BER92_RS05875 def810cddc417e9cd40b786518e6097c 217 Gene3D G3DSA:2.40.128.110 26 196 2.8E-50 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS05875 def810cddc417e9cd40b786518e6097c 217 PANTHER PTHR34406:SF1 5 199 2.8E-60 T 16-09-2016 BER92_RS05875 def810cddc417e9cd40b786518e6097c 217 SMART SM00867 26 191 5.3E-51 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 PANTHER PTHR33121 1 160 4.5E-33 T 16-09-2016 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Pfam PF08448 PAS fold 320 434 5.4E-8 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Pfam PF08448 PAS fold 580 688 1.5E-11 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Pfam PF13426 PAS domain 187 296 9.9E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SUPERFAMILY SSF55781 33 175 1.83E-26 T 16-09-2016 IPR029016 GAF domain-like BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SUPERFAMILY SSF55785 558 686 4.36E-18 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SUPERFAMILY SSF55785 163 295 3.84E-11 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SMART SM00267 688 863 2.3E-44 T 16-09-2016 IPR000160 GGDEF domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Pfam PF01590 GAF domain 43 161 1.2E-7 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Pfam PF00990 Diguanylate cyclase, GGDEF domain 699 853 7.6E-37 T 16-09-2016 IPR000160 GGDEF domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Gene3D G3DSA:3.30.450.20 452 569 1.2E-22 T 16-09-2016 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Gene3D G3DSA:3.30.450.20 570 686 3.0E-18 T 16-09-2016 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Gene3D G3DSA:3.30.450.20 295 432 2.6E-25 T 16-09-2016 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Gene3D G3DSA:3.30.450.20 172 294 2.4E-12 T 16-09-2016 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SUPERFAMILY SSF55785 452 562 1.35E-22 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 PANTHER PTHR33121:SF7 1 160 4.5E-33 T 16-09-2016 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Gene3D G3DSA:3.30.70.270 701 854 9.0E-45 T 16-09-2016 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SUPERFAMILY SSF55785 294 432 9.49E-21 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SMART SM00065 30 174 0.0031 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SUPERFAMILY SSF55073 704 854 6.54E-40 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 697 853 1.3E-34 T 16-09-2016 IPR000160 GGDEF domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 307 440 1.8E-14 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 570 692 3.7E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 446 568 8.7E-25 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Pfam PF00989 PAS fold 448 558 6.7E-12 T 16-09-2016 IPR013767 PAS fold GO:0006355 BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 Gene3D G3DSA:3.30.450.40 33 171 1.7E-13 T 16-09-2016 IPR029016 GAF domain-like BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SMART SM00091 176 242 2.6 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SMART SM00091 309 376 4.1E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SMART SM00091 573 639 0.022 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SMART SM00091 446 512 2.4E-12 T 16-09-2016 IPR000014 PAS domain BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SMART SM00086 254 297 21.0 T 16-09-2016 IPR001610 PAC motif BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SMART SM00086 392 434 8.3E-4 T 16-09-2016 IPR001610 PAC motif BER92_RS02565 4dcac8281d51b797f1df2e4582c723ea 868 SMART SM00086 519 561 1.0E-6 T 16-09-2016 IPR001610 PAC motif BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 SUPERFAMILY SSF56059 1 238 2.65E-75 T 16-09-2016 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 41.398 T 16-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 16-09-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 SUPERFAMILY SSF52210 239 385 3.4E-53 T 16-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 6.3E-157 T 16-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 Gene3D G3DSA:3.30.470.20 97 239 5.3E-50 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 PIRSF PIRSF001554 1 388 4.5E-147 T 16-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 PANTHER PTHR11815 1 389 6.2E-221 T 16-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 Pfam PF00549 CoA-ligase 262 382 4.2E-26 T 16-09-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 Pfam PF08442 ATP-grasp domain 2 202 3.1E-73 T 16-09-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 Gene3D G3DSA:3.40.50.261 241 383 4.2E-64 T 16-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 PANTHER PTHR11815:SF1 1 389 6.2E-221 T 16-09-2016 BER92_RS03935 0d372b0f348696cd81fcf622e9889e28 389 Gene3D G3DSA:3.30.1490.20 22 96 2.5E-28 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS10425 60cc8fc94260165ca5c1f824c03a18c0 263 Pfam PF01311 Bacterial export proteins, family 1 20 253 1.6E-56 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS10425 60cc8fc94260165ca5c1f824c03a18c0 263 PANTHER PTHR30065 7 263 2.0E-82 T 16-09-2016 BER92_RS10425 60cc8fc94260165ca5c1f824c03a18c0 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 209 228 2.3E-21 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS10425 60cc8fc94260165ca5c1f824c03a18c0 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 86 105 2.3E-21 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS10425 60cc8fc94260165ca5c1f824c03a18c0 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 27 48 2.3E-21 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS10425 60cc8fc94260165ca5c1f824c03a18c0 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 187 209 2.3E-21 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS10425 60cc8fc94260165ca5c1f824c03a18c0 263 PANTHER PTHR30065:SF1 7 263 2.0E-82 T 16-09-2016 BER92_RS10425 60cc8fc94260165ca5c1f824c03a18c0 263 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 20 261 3.9E-57 T 16-09-2016 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 BER92_RS17785 f58c21707d53a140785e17f12493cc0f 39 PANTHER PTHR35604 2 35 3.4E-14 T 16-09-2016 BER92_RS17785 f58c21707d53a140785e17f12493cc0f 39 PANTHER PTHR35604:SF2 2 35 3.4E-14 T 16-09-2016 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PIRSF PIRSF002560 1 156 2.9E-71 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 1.8E-73 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PANTHER PTHR30295 1 150 5.0E-48 T 16-09-2016 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 SUPERFAMILY SSF47240 1 152 7.93E-55 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 Gene3D G3DSA:1.20.1260.10 1 155 5.5E-65 T 16-09-2016 IPR012347 Ferritin-related BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PANTHER PTHR30295:SF0 1 150 5.0E-48 T 16-09-2016 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PRINTS PR00601 Bacterioferritin signature 128 149 2.0E-69 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PRINTS PR00601 Bacterioferritin signature 3 22 2.0E-69 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PRINTS PR00601 Bacterioferritin signature 65 85 2.0E-69 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PRINTS PR00601 Bacterioferritin signature 44 64 2.0E-69 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PRINTS PR00601 Bacterioferritin signature 86 106 2.0E-69 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PRINTS PR00601 Bacterioferritin signature 107 127 2.0E-69 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 PRINTS PR00601 Bacterioferritin signature 23 43 2.0E-69 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS17910 0e49ddbb8cda1d7f216c096738eb2520 156 Pfam PF00210 Ferritin-like domain 8 143 1.3E-40 T 16-09-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 Gene3D G3DSA:1.20.200.10 120 389 4.6E-85 T 16-09-2016 BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 7.4E-49 T 16-09-2016 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 Gene3D G3DSA:1.10.40.30 390 445 1.5E-30 T 16-09-2016 BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 SUPERFAMILY SSF48557 2 447 2.83E-99 T 16-09-2016 IPR008948 L-Aspartase-like GO:0003824 BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 PANTHER PTHR11444:SF17 1 451 3.5E-296 T 16-09-2016 BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 16-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 Pfam PF00206 Lyase 14 312 2.3E-60 T 16-09-2016 IPR022761 Fumarate lyase, N-terminal BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 PANTHER PTHR11444 1 451 3.5E-296 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 451 6.2E-118 T 16-09-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 2.2E-16 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 2.2E-16 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 2.2E-16 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 2.2E-16 T 16-09-2016 IPR000362 Fumarate lyase family BER92_RS08060 34b1432c90f30fa7178d4db780fff24e 455 Gene3D G3DSA:1.10.275.10 2 119 2.3E-46 T 16-09-2016 IPR024083 Fumarase/histidase, N-terminal BER92_RS04565 c2b0547bc55636d84e398a7585b5bfe6 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 60 1.5E-11 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS04565 c2b0547bc55636d84e398a7585b5bfe6 190 Gene3D G3DSA:1.10.357.10 5 182 2.5E-33 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS04565 c2b0547bc55636d84e398a7585b5bfe6 190 SUPERFAMILY SSF46689 3 80 7.98E-16 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS04565 c2b0547bc55636d84e398a7585b5bfe6 190 SUPERFAMILY SSF48498 80 180 1.91E-9 T 16-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal BER92_RS04565 c2b0547bc55636d84e398a7585b5bfe6 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 2.3E-9 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS04565 c2b0547bc55636d84e398a7585b5bfe6 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.3E-9 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS04565 c2b0547bc55636d84e398a7585b5bfe6 190 PANTHER PTHR30055:SF19 1 186 7.0E-20 T 16-09-2016 BER92_RS04565 c2b0547bc55636d84e398a7585b5bfe6 190 PANTHER PTHR30055 1 186 7.0E-20 T 16-09-2016 BER92_RS06945 a72b591947c5feae986c9a5fa0a92ca8 538 Pfam PF03781 Sulfatase-modifying factor enzyme 1 263 536 5.8E-65 T 16-09-2016 IPR005532 Sulfatase-modifying factor enzyme BER92_RS06945 a72b591947c5feae986c9a5fa0a92ca8 538 SUPERFAMILY SSF56436 262 537 1.95E-62 T 16-09-2016 IPR016187 C-type lectin fold BER92_RS06945 a72b591947c5feae986c9a5fa0a92ca8 538 Gene3D G3DSA:3.90.1580.10 259 537 3.4E-67 T 16-09-2016 IPR005532 Sulfatase-modifying factor enzyme BER92_RS06945 a72b591947c5feae986c9a5fa0a92ca8 538 PANTHER PTHR23150:SF19 149 538 3.8E-99 T 16-09-2016 BER92_RS06945 a72b591947c5feae986c9a5fa0a92ca8 538 PANTHER PTHR23150 149 538 3.8E-99 T 16-09-2016 BER92_RS10990 f572476add89b98c76bfa14176535bbb 269 Gene3D G3DSA:3.40.1190.20 9 257 6.1E-91 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS10990 f572476add89b98c76bfa14176535bbb 269 SUPERFAMILY SSF53613 9 260 3.27E-71 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS10990 f572476add89b98c76bfa14176535bbb 269 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 9 254 3.7E-85 T 16-09-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BER92_RS10990 f572476add89b98c76bfa14176535bbb 269 PANTHER PTHR20858 8 263 1.3E-101 T 16-09-2016 BER92_RS10990 f572476add89b98c76bfa14176535bbb 269 PANTHER PTHR20858:SF17 8 263 1.3E-101 T 16-09-2016 BER92_RS10990 f572476add89b98c76bfa14176535bbb 269 Pfam PF08543 Phosphomethylpyrimidine kinase 16 254 6.0E-84 T 16-09-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 BER92_RS01545 2f2371f8759a137d8a0f16d85d11b3c9 153 PANTHER PTHR11118 1 86 8.0E-37 T 16-09-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 BER92_RS01545 2f2371f8759a137d8a0f16d85d11b3c9 153 PANTHER PTHR11118:SF3 1 86 8.0E-37 T 16-09-2016 BER92_RS01545 2f2371f8759a137d8a0f16d85d11b3c9 153 Pfam PF01139 tRNA-splicing ligase RtcB 1 86 2.6E-24 T 16-09-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 BER92_RS01545 2f2371f8759a137d8a0f16d85d11b3c9 153 SUPERFAMILY SSF103365 1 86 3.01E-23 T 16-09-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Gene3D G3DSA:3.50.40.10 200 391 4.3E-74 T 16-09-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Gene3D G3DSA:3.30.930.10 488 688 2.8E-60 T 16-09-2016 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 SUPERFAMILY SSF54991 694 791 9.81E-28 T 16-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 43.473 T 16-09-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Gene3D G3DSA:3.30.56.20 401 474 1.2E-23 T 16-09-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 SUPERFAMILY SSF46955 403 474 2.11E-17 T 16-09-2016 IPR009061 Putative DNA-binding domain BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 2.7E-26 T 16-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Pfam PF03484 tRNA synthetase B5 domain 405 470 1.3E-17 T 16-09-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 SUPERFAMILY SSF50249 36 190 9.55E-42 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 SMART SM00873 211 384 4.7E-84 T 16-09-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Pfam PF03483 B3/4 domain 212 384 5.3E-64 T 16-09-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 PANTHER PTHR10947 2 791 4.7E-297 T 16-09-2016 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 SMART SM00896 698 791 9.2E-39 T 16-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Gene3D G3DSA:3.30.56.10 154 182 1.1E-23 T 16-09-2016 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Gene3D G3DSA:3.30.56.10 1 38 1.1E-23 T 16-09-2016 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 SUPERFAMILY SSF56037 198 392 1.33E-67 T 16-09-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Pfam PF01588 Putative tRNA binding domain 45 144 1.5E-23 T 16-09-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 9.9E-227 T 16-09-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Gene3D G3DSA:3.30.70.380 700 791 3.5E-27 T 16-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 SUPERFAMILY SSF55681 466 687 5.47E-47 T 16-09-2016 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 Gene3D G3DSA:2.40.50.140 43 152 1.9E-37 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 SMART SM00874 402 470 2.1E-26 T 16-09-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 BER92_RS06020 be9df45f4ea73bbb9ab0f759e98684d7 792 PANTHER PTHR10947:SF0 2 791 4.7E-297 T 16-09-2016 BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 PANTHER PTHR22990 148 338 9.1E-20 T 16-09-2016 BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 SUPERFAMILY SSF51126 45 339 5.57E-35 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 228 263 1.1E-6 T 16-09-2016 IPR022441 Parallel beta-helix repeat-2 BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 Pfam PF13229 Right handed beta helix region 150 320 2.9E-18 T 16-09-2016 BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 SMART SM00710 203 225 32.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 SMART SM00710 249 271 110.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 SMART SM00710 288 311 1400.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 SMART SM00710 226 248 14.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 SMART SM00710 120 163 7000.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 SMART SM00710 180 202 86.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 Gene3D G3DSA:2.160.20.10 48 308 2.2E-20 T 16-09-2016 IPR012334 Pectin lyase fold BER92_RS06505 5b50b0b19be9f7e06e05676211fa194f 349 SMART SM00722 155 270 5.5E-5 T 16-09-2016 IPR006633 Carbohydrate-binding/sugar hydrolysis domain BER92_RS00980 4787adacac732037c876647571050c1e 436 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 16 434 2.3E-97 T 16-09-2016 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS00980 4787adacac732037c876647571050c1e 436 Gene3D G3DSA:1.10.940.10 11 149 4.1E-31 T 16-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BER92_RS00980 4787adacac732037c876647571050c1e 436 PANTHER PTHR22807 42 434 3.4E-93 T 16-09-2016 BER92_RS00980 4787adacac732037c876647571050c1e 436 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 318 329 - T 16-09-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS00980 4787adacac732037c876647571050c1e 436 SUPERFAMILY SSF48013 12 149 3.11E-25 T 16-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BER92_RS00980 4787adacac732037c876647571050c1e 436 Pfam PF01189 16S rRNA methyltransferase RsmB/F 242 432 1.4E-51 T 16-09-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS00980 4787adacac732037c876647571050c1e 436 PANTHER PTHR22807:SF30 42 434 3.4E-93 T 16-09-2016 BER92_RS00980 4787adacac732037c876647571050c1e 436 Gene3D G3DSA:3.30.70.1170 173 230 6.4E-21 T 16-09-2016 BER92_RS00980 4787adacac732037c876647571050c1e 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 319 331 5.1E-27 T 16-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS00980 4787adacac732037c876647571050c1e 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 5.1E-27 T 16-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS00980 4787adacac732037c876647571050c1e 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 5.1E-27 T 16-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS00980 4787adacac732037c876647571050c1e 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 369 385 5.1E-27 T 16-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS00980 4787adacac732037c876647571050c1e 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 417 434 5.1E-27 T 16-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 BER92_RS00980 4787adacac732037c876647571050c1e 436 SUPERFAMILY SSF53335 144 434 3.25E-61 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS00980 4787adacac732037c876647571050c1e 436 Gene3D G3DSA:3.40.50.150 234 434 4.7E-47 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS00980 4787adacac732037c876647571050c1e 436 Pfam PF01029 NusB family 12 133 2.8E-19 T 16-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BER92_RS08760 01e35d34b407d5166300de094973cf9a 163 Pfam PF02542 YgbB family 5 158 7.3E-64 T 16-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS08760 01e35d34b407d5166300de094973cf9a 163 Gene3D G3DSA:3.30.1330.50 3 160 2.5E-70 T 16-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS08760 01e35d34b407d5166300de094973cf9a 163 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 39 54 - T 16-09-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS08760 01e35d34b407d5166300de094973cf9a 163 PANTHER PTHR32125 2 158 2.3E-53 T 16-09-2016 BER92_RS08760 01e35d34b407d5166300de094973cf9a 163 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 6 159 2.0E-69 T 16-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS08760 01e35d34b407d5166300de094973cf9a 163 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 5 160 35.885 T 16-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS08760 01e35d34b407d5166300de094973cf9a 163 SUPERFAMILY SSF69765 4 160 1.11E-64 T 16-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS17370 c04597cf2cb878a926b06c5de46c8100 143 Pfam PF13581 Histidine kinase-like ATPase domain 10 130 1.8E-22 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS17370 c04597cf2cb878a926b06c5de46c8100 143 SUPERFAMILY SSF55874 30 122 5.47E-7 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS17370 c04597cf2cb878a926b06c5de46c8100 143 Gene3D G3DSA:3.30.565.10 15 129 6.6E-6 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS06225 6edfad14e6955dc8b0909933815121fa 531 Gene3D G3DSA:3.40.309.10 264 454 4.5E-49 T 16-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 BER92_RS06225 6edfad14e6955dc8b0909933815121fa 531 PANTHER PTHR11699 6 514 4.5E-147 T 16-09-2016 BER92_RS06225 6edfad14e6955dc8b0909933815121fa 531 Pfam PF00171 Aldehyde dehydrogenase family 22 422 2.7E-40 T 16-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 BER92_RS06225 6edfad14e6955dc8b0909933815121fa 531 SUPERFAMILY SSF53720 23 482 3.01E-71 T 16-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 BER92_RS06225 6edfad14e6955dc8b0909933815121fa 531 PANTHER PTHR11699:SF12 6 514 4.5E-147 T 16-09-2016 IPR011966 Phenylacetic acid degradation protein PaaN BER92_RS06225 6edfad14e6955dc8b0909933815121fa 531 Gene3D G3DSA:3.40.605.10 7 262 7.4E-36 T 16-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 Pfam PF02779 Transketolase, pyrimidine binding domain 595 788 2.1E-62 T 16-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 Gene3D G3DSA:3.40.50.970 157 518 1.4E-72 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 Pfam PF00676 Dehydrogenase E1 component 209 515 1.2E-52 T 16-09-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 SUPERFAMILY SSF52518 117 540 3.1E-85 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 932 0.0 T 16-09-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 SUPERFAMILY SSF52518 577 794 1.68E-52 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 SMART SM00861 594 787 2.5E-53 T 16-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 PANTHER PTHR23152 2 940 0.0 T 16-09-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 791 932 4.4E-51 T 16-09-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 PANTHER PTHR23152:SF4 2 940 0.0 T 16-09-2016 BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 11 49 1.6E-15 T 16-09-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 PIRSF PIRSF000157 2 934 0.0 T 16-09-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BER92_RS08045 9b29716713f883d15697b22e9a5c321a 942 Gene3D G3DSA:3.40.50.970 596 791 4.6E-24 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS12130 2aaf4c9d0ddad111a43f35747eb5a5ba 355 Pfam PF13484 4Fe-4S double cluster binding domain 196 260 6.9E-20 T 16-09-2016 BER92_RS12130 2aaf4c9d0ddad111a43f35747eb5a5ba 355 SUPERFAMILY SSF54862 174 315 3.93E-18 T 16-09-2016 BER92_RS12130 2aaf4c9d0ddad111a43f35747eb5a5ba 355 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 197 208 - T 16-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER92_RS12130 2aaf4c9d0ddad111a43f35747eb5a5ba 355 Gene3D G3DSA:3.30.70.20 194 269 4.4E-7 T 16-09-2016 BER92_RS12130 2aaf4c9d0ddad111a43f35747eb5a5ba 355 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 17 353 2.2E-150 T 16-09-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12130 2aaf4c9d0ddad111a43f35747eb5a5ba 355 PANTHER PTHR30002 5 354 2.9E-173 T 16-09-2016 BER92_RS12130 2aaf4c9d0ddad111a43f35747eb5a5ba 355 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 10 319 49.712 T 16-09-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12130 2aaf4c9d0ddad111a43f35747eb5a5ba 355 Pfam PF08331 Domain of unknown function (DUF1730) 65 144 4.6E-22 T 16-09-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12130 2aaf4c9d0ddad111a43f35747eb5a5ba 355 PANTHER PTHR30002:SF4 5 354 2.9E-173 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 Pfam PF13244 Domain of unknown function (DUF4040) 611 675 2.2E-17 T 16-09-2016 IPR025383 Domain of unknown function DUF4040 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 PANTHER PTHR22773:SF46 1 581 6.9E-242 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 PANTHER PTHR22773 1 581 6.9E-242 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 Pfam PF00361 Proton-conducting membrane transporter 128 415 4.8E-65 T 16-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 105 125 3.0E-38 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 240 266 3.0E-38 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 152 173 3.0E-38 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 308 320 3.0E-38 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 218 239 3.0E-38 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 77 102 3.0E-38 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 417 436 3.0E-38 T 16-09-2016 BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 788 907 1.0E-28 T 16-09-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein BER92_RS18105 98d5a75ef43bd2201abfab74446055ba 942 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 115 9.1E-10 T 16-09-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal BER92_RS07680 d01e28ff2187a862a28f1040e601d4aa 148 SUPERFAMILY SSF53098 35 141 5.06E-16 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS07680 d01e28ff2187a862a28f1040e601d4aa 148 PANTHER PTHR32552 1 105 2.2E-30 T 16-09-2016 BER92_RS07680 d01e28ff2187a862a28f1040e601d4aa 148 Pfam PF13333 Integrase core domain 110 141 1.4E-5 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS07680 d01e28ff2187a862a28f1040e601d4aa 148 Pfam PF00665 Integrase core domain 42 102 4.2E-13 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS07680 d01e28ff2187a862a28f1040e601d4aa 148 Gene3D G3DSA:3.30.420.10 36 100 1.3E-12 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS15045 009579e7ba715483559092c8c0d7fac0 665 Pfam PF01401 Angiotensin-converting enzyme 39 659 1.2E-183 T 16-09-2016 IPR001548 Peptidase M2, peptidyl-dipeptidase A GO:0006508|GO:0008237|GO:0008241|GO:0016020 BER92_RS15045 009579e7ba715483559092c8c0d7fac0 665 SUPERFAMILY SSF55486 41 312 2.61E-184 T 16-09-2016 BER92_RS15045 009579e7ba715483559092c8c0d7fac0 665 SUPERFAMILY SSF55486 348 660 2.61E-184 T 16-09-2016 BER92_RS15045 009579e7ba715483559092c8c0d7fac0 665 PANTHER PTHR10514 346 661 4.4E-252 T 16-09-2016 IPR001548 Peptidase M2, peptidyl-dipeptidase A GO:0006508|GO:0008237|GO:0008241|GO:0016020 BER92_RS15045 009579e7ba715483559092c8c0d7fac0 665 PANTHER PTHR10514 40 310 4.4E-252 T 16-09-2016 IPR001548 Peptidase M2, peptidyl-dipeptidase A GO:0006508|GO:0008237|GO:0008241|GO:0016020 BER92_RS06070 cfed528a6ce7caab643aa7ffeb0d64f7 380 SUPERFAMILY SSF53756 2 371 1.36E-59 T 16-09-2016 BER92_RS06070 cfed528a6ce7caab643aa7ffeb0d64f7 380 Pfam PF13439 Glycosyltransferase Family 4 14 179 4.5E-18 T 16-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain BER92_RS06070 cfed528a6ce7caab643aa7ffeb0d64f7 380 PANTHER PTHR12526 1 372 5.2E-143 T 16-09-2016 BER92_RS06070 cfed528a6ce7caab643aa7ffeb0d64f7 380 Pfam PF00534 Glycosyl transferases group 1 188 333 9.6E-25 T 16-09-2016 IPR001296 Glycosyl transferase, family 1 BER92_RS06070 cfed528a6ce7caab643aa7ffeb0d64f7 380 Gene3D G3DSA:3.40.50.2000 189 339 4.1E-19 T 16-09-2016 BER92_RS06070 cfed528a6ce7caab643aa7ffeb0d64f7 380 PANTHER PTHR12526:SF373 1 372 5.2E-143 T 16-09-2016 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 Gene3D G3DSA:1.20.990.10 297 401 2.0E-30 T 16-09-2016 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 Pfam PF00175 Oxidoreductase NAD-binding domain 474 579 4.0E-19 T 16-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PANTHER PTHR19384 61 615 4.6E-190 T 16-09-2016 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 SUPERFAMILY SSF52343 462 615 1.23E-48 T 16-09-2016 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 Gene3D G3DSA:3.40.50.80 472 614 2.3E-54 T 16-09-2016 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 Pfam PF00258 Flavodoxin 72 195 6.0E-31 T 16-09-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 SUPERFAMILY SSF52218 68 215 3.19E-44 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 Gene3D G3DSA:3.40.50.360 63 215 3.8E-44 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PANTHER PTHR19384:SF76 61 615 4.6E-190 T 16-09-2016 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 Gene3D G3DSA:2.40.30.10 236 296 2.1E-27 T 16-09-2016 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 Gene3D G3DSA:2.40.30.10 402 471 2.1E-27 T 16-09-2016 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 SUPERFAMILY SSF63380 234 463 3.09E-52 T 16-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00369 Flavodoxin signature 175 194 2.8E-16 T 16-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00369 Flavodoxin signature 151 161 2.8E-16 T 16-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00369 Flavodoxin signature 119 130 2.8E-16 T 16-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00369 Flavodoxin signature 71 84 2.8E-16 T 16-09-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 Pfam PF00667 FAD binding domain 270 442 2.3E-16 T 16-09-2016 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 10 615 4.1E-249 T 16-09-2016 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 511 522 1.5E-22 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 286 296 1.5E-22 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 542 558 1.5E-22 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 498 507 1.5E-22 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 404 411 1.5E-22 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 473 492 1.5E-22 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS16720 3e593bf21790dd3c10a89738c1d0ace1 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 565 573 1.5E-22 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS11275 99646b9d97bdca7c6c7229816e3db7b2 74 Pfam PF11745 Protein of unknown function (DUF3304) 20 73 3.1E-11 T 16-09-2016 IPR021733 Protein of unknown function DUF3304 BER92_RS02965 f7b5875a4777618bf6e56420d73eeb34 342 Gene3D G3DSA:3.40.50.10490 8 165 2.6E-29 T 16-09-2016 BER92_RS02965 f7b5875a4777618bf6e56420d73eeb34 342 SUPERFAMILY SSF53697 11 340 5.09E-76 T 16-09-2016 BER92_RS02965 f7b5875a4777618bf6e56420d73eeb34 342 PANTHER PTHR10937:SF8 1 341 2.1E-114 T 16-09-2016 BER92_RS02965 f7b5875a4777618bf6e56420d73eeb34 342 Gene3D G3DSA:3.40.50.10490 184 342 9.4E-41 T 16-09-2016 BER92_RS02965 f7b5875a4777618bf6e56420d73eeb34 342 PANTHER PTHR10937 1 341 2.1E-114 T 16-09-2016 BER92_RS02965 f7b5875a4777618bf6e56420d73eeb34 342 Pfam PF01380 SIS domain 204 286 5.8E-14 T 16-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 BER92_RS02965 f7b5875a4777618bf6e56420d73eeb34 342 Pfam PF01380 SIS domain 49 166 7.0E-18 T 16-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 BER92_RS04240 9dc06dd6aef2f978f64c5b36d16b6921 314 PANTHER PTHR10948 1 313 1.1E-71 T 16-09-2016 BER92_RS04240 9dc06dd6aef2f978f64c5b36d16b6921 314 SUPERFAMILY SSF53098 159 304 3.34E-19 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS04240 9dc06dd6aef2f978f64c5b36d16b6921 314 Pfam PF13936 Helix-turn-helix domain 3 45 2.7E-15 T 16-09-2016 IPR025246 Transposase IS30-like HTH domain BER92_RS04240 9dc06dd6aef2f978f64c5b36d16b6921 314 Pfam PF00665 Integrase core domain 161 262 3.4E-7 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS04240 9dc06dd6aef2f978f64c5b36d16b6921 314 Gene3D G3DSA:3.30.420.10 161 303 8.8E-11 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS07250 b2c5aa323bbe80f9b02eb552a7f22cc4 250 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 160 181 - T 16-09-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 BER92_RS07250 b2c5aa323bbe80f9b02eb552a7f22cc4 250 PANTHER PTHR10884 27 65 4.1E-74 T 16-09-2016 BER92_RS07250 b2c5aa323bbe80f9b02eb552a7f22cc4 250 PANTHER PTHR10884 113 217 4.1E-74 T 16-09-2016 BER92_RS07250 b2c5aa323bbe80f9b02eb552a7f22cc4 250 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 8 207 33.232 T 16-09-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 BER92_RS07250 b2c5aa323bbe80f9b02eb552a7f22cc4 250 SUPERFAMILY SSF143243 111 219 4.58E-54 T 16-09-2016 BER92_RS07250 b2c5aa323bbe80f9b02eb552a7f22cc4 250 SUPERFAMILY SSF143243 8 67 4.58E-54 T 16-09-2016 BER92_RS07250 b2c5aa323bbe80f9b02eb552a7f22cc4 250 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 132 187 8.0E-27 T 16-09-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 BER92_RS07250 b2c5aa323bbe80f9b02eb552a7f22cc4 250 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 33 199 1.1E-41 T 16-09-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 PRINTS PR01021 OMPA domain signature 256 278 5.3E-18 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 PRINTS PR01021 OMPA domain signature 286 301 5.3E-18 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 PRINTS PR01021 OMPA domain signature 301 317 5.3E-18 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 Pfam PF00691 OmpA family 255 346 1.8E-22 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 PANTHER PTHR30128:SF10 25 365 4.3E-138 T 16-09-2016 BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 SUPERFAMILY SSF103088 253 363 6.8E-36 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 Pfam PF13505 Outer membrane protein beta-barrel domain 8 188 3.1E-20 T 16-09-2016 IPR027385 Outer membrane protein beta-barrel BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 Gene3D G3DSA:2.40.160.20 14 210 1.6E-16 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 Gene3D G3DSA:3.30.1330.60 252 363 1.6E-39 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 SUPERFAMILY SSF103647 210 246 4.58E-5 T 16-09-2016 IPR028974 TSP type-3 repeat GO:0005509 BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 SUPERFAMILY SSF56925 27 188 2.3E-17 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS02235 59d6170f8e197f60837e17b4ad537e48 365 PANTHER PTHR30128 25 365 4.3E-138 T 16-09-2016 BER92_RS06365 6593d59e87a359f36252f400c6370e67 245 SUPERFAMILY SSF53098 32 223 1.27E-65 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS06365 6593d59e87a359f36252f400c6370e67 245 Gene3D G3DSA:3.30.420.10 36 178 8.9E-44 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS06365 6593d59e87a359f36252f400c6370e67 245 Pfam PF01351 Ribonuclease HII 38 216 3.4E-36 T 16-09-2016 IPR024567 Ribonuclease HII/HIII domain BER92_RS06365 6593d59e87a359f36252f400c6370e67 245 Hamap MF_00052_B Ribonuclease HII [rnhB]. 36 217 36.836 T 16-09-2016 IPR022898 Ribonuclease HII GO:0004523 BER92_RS06365 6593d59e87a359f36252f400c6370e67 245 PANTHER PTHR10954 31 222 9.5E-71 T 16-09-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 BER92_RS08695 eb8cfefb41673a149516e970190fe86b 223 PANTHER PTHR41795 15 223 9.9E-66 T 16-09-2016 BER92_RS08695 eb8cfefb41673a149516e970190fe86b 223 Pfam PF06055 Exopolysaccharide synthesis, ExoD 28 204 3.5E-47 T 16-09-2016 IPR010331 Exopolysaccharide synthesis, ExoD BER92_RS08695 eb8cfefb41673a149516e970190fe86b 223 PIRSF PIRSF033239 14 216 1.7E-42 T 16-09-2016 IPR010331 Exopolysaccharide synthesis, ExoD BER92_RS03025 9cd601075cd405b1f5ec9082a4da674d 186 Gene3D G3DSA:1.25.40.10 86 185 1.2E-36 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS03025 9cd601075cd405b1f5ec9082a4da674d 186 Gene3D G3DSA:1.20.58.320 8 85 9.3E-32 T 16-09-2016 BER92_RS03025 9cd601075cd405b1f5ec9082a4da674d 186 PANTHER PTHR23004:SF7 13 186 1.4E-73 T 16-09-2016 BER92_RS03025 9cd601075cd405b1f5ec9082a4da674d 186 PANTHER PTHR23004 13 186 1.4E-73 T 16-09-2016 BER92_RS03025 9cd601075cd405b1f5ec9082a4da674d 186 SUPERFAMILY SSF48452 11 182 1.67E-60 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS03025 9cd601075cd405b1f5ec9082a4da674d 186 Pfam PF06041 Bacterial protein of unknown function (DUF924) 16 183 2.1E-56 T 16-09-2016 IPR010323 Protein of unknown function DUF924 BER92_RS16745 f74f367fb9591c44d4b1977090cf7ba6 145 Pfam PF11162 Protein of unknown function (DUF2946) 14 142 7.4E-7 T 16-09-2016 IPR021333 Protein of unknown function DUF2946 BER92_RS12885 fe8fe3f128344bb7d529727648283b85 233 PANTHER PTHR34982:SF2 1 232 5.0E-81 T 16-09-2016 BER92_RS12885 fe8fe3f128344bb7d529727648283b85 233 Pfam PF02108 Flagellar assembly protein FliH 108 214 9.9E-10 T 16-09-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE BER92_RS12885 fe8fe3f128344bb7d529727648283b85 233 PANTHER PTHR34982 1 232 5.0E-81 T 16-09-2016 BER92_RS12885 fe8fe3f128344bb7d529727648283b85 233 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 48 207 7.9E-40 T 16-09-2016 IPR012842 Type III secretion system HrpE/YscL BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 Gene3D G3DSA:3.40.50.720 145 238 8.3E-10 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 Pfam PF13727 CoA-binding domain 68 242 1.3E-13 T 16-09-2016 BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 PANTHER PTHR10366 286 552 3.5E-98 T 16-09-2016 BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 SUPERFAMILY SSF51735 285 553 2.82E-57 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 PANTHER PTHR10366:SF256 286 552 3.5E-98 T 16-09-2016 BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 SUPERFAMILY SSF53335 112 332 4.48E-12 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 Pfam PF02719 Polysaccharide biosynthesis protein 287 569 3.5E-111 T 16-09-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 Gene3D G3DSA:3.90.25.10 468 547 4.0E-7 T 16-09-2016 BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 285 454 0.0048 T 16-09-2016 BER92_RS09035 d88c347ee5468feb36d02b1aef05761f 635 Gene3D G3DSA:3.40.50.720 285 467 6.3E-42 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS19325 82ea4680bed88da1e5585414cf608c42 46 PANTHER PTHR14503 1 46 2.4E-23 T 16-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS19325 82ea4680bed88da1e5585414cf608c42 46 Pfam PF00468 Ribosomal protein L34 3 46 5.2E-25 T 16-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS19325 82ea4680bed88da1e5585414cf608c42 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 4 23 - T 16-09-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS19325 82ea4680bed88da1e5585414cf608c42 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 3 46 16.576 T 16-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS19325 82ea4680bed88da1e5585414cf608c42 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 3 46 1.2E-25 T 16-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS19325 82ea4680bed88da1e5585414cf608c42 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 4 28 1.0E-7 T 16-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS17465 9b86d91f6dbd42e04041d91c358dbc6f 305 PANTHER PTHR10907:SF47 1 304 8.4E-93 T 16-09-2016 BER92_RS17465 9b86d91f6dbd42e04041d91c358dbc6f 305 Gene3D G3DSA:2.120.10.30 35 303 8.1E-56 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS17465 9b86d91f6dbd42e04041d91c358dbc6f 305 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 46 295 5.7E-44 T 16-09-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region BER92_RS17465 9b86d91f6dbd42e04041d91c358dbc6f 305 SUPERFAMILY SSF63829 16 303 1.72E-47 T 16-09-2016 BER92_RS17465 9b86d91f6dbd42e04041d91c358dbc6f 305 PANTHER PTHR10907 1 304 8.4E-93 T 16-09-2016 BER92_RS17465 9b86d91f6dbd42e04041d91c358dbc6f 305 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 47 64 7.3E-7 T 16-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) BER92_RS17465 9b86d91f6dbd42e04041d91c358dbc6f 305 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 176 198 7.3E-7 T 16-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) BER92_RS17465 9b86d91f6dbd42e04041d91c358dbc6f 305 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 240 257 7.3E-7 T 16-09-2016 IPR005511 Senescence marker protein-30 (SMP-30) BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 Gene3D G3DSA:1.10.10.10 18 161 6.2E-31 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 Pfam PF01047 MarR family 52 111 1.1E-11 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 PANTHER PTHR33164:SF4 1 164 1.9E-53 T 16-09-2016 BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 SUPERFAMILY SSF46785 21 160 2.12E-28 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 107 123 1.0E-9 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 103 1.0E-9 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 87 1.0E-9 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 137 157 1.0E-9 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 SMART SM00347 45 147 4.8E-19 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS06600 6b416b1104708dcf6b6afac4db286770 166 PANTHER PTHR33164 1 164 1.9E-53 T 16-09-2016 BER92_RS01115 8d22ab5689b793a0cb82d5d8c8f00b6a 123 PANTHER PTHR34389 1 116 7.0E-46 T 16-09-2016 BER92_RS01115 8d22ab5689b793a0cb82d5d8c8f00b6a 123 SUPERFAMILY SSF54909 1 111 5.9E-25 T 16-09-2016 IPR011008 Dimeric alpha-beta barrel BER92_RS01115 8d22ab5689b793a0cb82d5d8c8f00b6a 123 PANTHER PTHR34389:SF3 1 116 7.0E-46 T 16-09-2016 BER92_RS01115 8d22ab5689b793a0cb82d5d8c8f00b6a 123 Pfam PF05336 Domain of unknown function (DUF718) 3 111 7.0E-28 T 16-09-2016 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 UniPathway: UPA00125 BER92_RS01625 74243d3d69b502fec206ebaa25ec30dc 322 PANTHER PTHR35604:SF2 2 322 6.4E-236 T 16-09-2016 BER92_RS01625 74243d3d69b502fec206ebaa25ec30dc 322 PANTHER PTHR35604 2 322 6.4E-236 T 16-09-2016 BER92_RS01625 74243d3d69b502fec206ebaa25ec30dc 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.0E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS01625 74243d3d69b502fec206ebaa25ec30dc 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01265 7bdb90a924a484d0dbd3a90b8f99dbf0 242 SUPERFAMILY SSF53067 113 236 1.12E-23 T 16-09-2016 BER92_RS01265 7bdb90a924a484d0dbd3a90b8f99dbf0 242 PANTHER PTHR34265 1 236 1.8E-47 T 16-09-2016 BER92_RS01265 7bdb90a924a484d0dbd3a90b8f99dbf0 242 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 6 234 3.0E-21 T 16-09-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 BER92_RS01265 7bdb90a924a484d0dbd3a90b8f99dbf0 242 SUPERFAMILY SSF53067 5 110 2.65E-17 T 16-09-2016 BER92_RS01265 7bdb90a924a484d0dbd3a90b8f99dbf0 242 Hamap MF_01274 Type III pantothenate kinase [coaX]. 2 240 14.578 T 16-09-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 BER92_RS01265 7bdb90a924a484d0dbd3a90b8f99dbf0 242 Pfam PF03309 Type III pantothenate kinase 5 192 2.5E-34 T 16-09-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 BER92_RS01265 7bdb90a924a484d0dbd3a90b8f99dbf0 242 Gene3D G3DSA:3.30.420.40 86 238 5.4E-33 T 16-09-2016 BER92_RS04760 02a243b28a54a2c450fdde00107cb712 185 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 28 178 8.0E-65 T 16-09-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 BER92_RS04760 02a243b28a54a2c450fdde00107cb712 185 Pfam PF01923 Cobalamin adenosyltransferase 8 166 7.6E-58 T 16-09-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 BER92_RS04760 02a243b28a54a2c450fdde00107cb712 185 SUPERFAMILY SSF89028 7 179 1.57E-59 T 16-09-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 BER92_RS04760 02a243b28a54a2c450fdde00107cb712 185 PANTHER PTHR12213:SF0 4 179 5.3E-74 T 16-09-2016 BER92_RS04760 02a243b28a54a2c450fdde00107cb712 185 PANTHER PTHR12213 4 179 5.3E-74 T 16-09-2016 BER92_RS04760 02a243b28a54a2c450fdde00107cb712 185 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 179 1.8E-57 T 16-09-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 BER92_RS04760 02a243b28a54a2c450fdde00107cb712 185 Gene3D G3DSA:1.20.1200.10 18 181 7.2E-64 T 16-09-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 BER92_RS04485 a9c6e6b0b792488b10c8c482cdb9d7b3 175 PANTHER PTHR30455 2 156 9.8E-70 T 16-09-2016 BER92_RS04485 a9c6e6b0b792488b10c8c482cdb9d7b3 175 Pfam PF03477 ATP cone domain 51 136 3.1E-14 T 16-09-2016 IPR005144 ATP-cone domain BER92_RS04485 a9c6e6b0b792488b10c8c482cdb9d7b3 175 PANTHER PTHR30455:SF2 2 156 9.8E-70 T 16-09-2016 BER92_RS04485 a9c6e6b0b792488b10c8c482cdb9d7b3 175 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 84.613 T 16-09-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 BER92_RS04485 a9c6e6b0b792488b10c8c482cdb9d7b3 175 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 3.6E-59 T 16-09-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 BER92_RS05825 0417714c704a6b3522bcbf2471997d11 343 PANTHER PTHR32268 1 332 4.7E-23 T 16-09-2016 BER92_RS05825 0417714c704a6b3522bcbf2471997d11 343 PIRSF PIRSF000443 1 342 1.7E-69 T 16-09-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 BER92_RS05825 0417714c704a6b3522bcbf2471997d11 343 SUPERFAMILY SSF53474 38 335 4.75E-48 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS05825 0417714c704a6b3522bcbf2471997d11 343 Pfam PF00561 alpha/beta hydrolase fold 76 324 1.8E-17 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS05825 0417714c704a6b3522bcbf2471997d11 343 Gene3D G3DSA:3.40.50.1820 42 334 2.8E-30 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS09105 098164e3f67110af96eb941da5453c22 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS09105 098164e3f67110af96eb941da5453c22 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS09105 098164e3f67110af96eb941da5453c22 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS09105 098164e3f67110af96eb941da5453c22 455 Pfam PF01609 Transposase DDE domain 284 421 2.1E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS00385 6d7c87898b0b2c0f2d59ef69a619e627 125 PANTHER PTHR33803 1 84 1.1E-34 T 16-09-2016 BER92_RS00385 6d7c87898b0b2c0f2d59ef69a619e627 125 PANTHER PTHR33803:SF1 1 84 1.1E-34 T 16-09-2016 BER92_RS14480 bf41a309c912123320317df0c97708e5 242 Pfam PF01709 Transcriptional regulator 7 235 1.7E-84 T 16-09-2016 IPR002876 Transcriptional regulator TACO1-like BER92_RS14480 bf41a309c912123320317df0c97708e5 242 Gene3D G3DSA:1.10.10.200 7 75 6.5E-25 T 16-09-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like BER92_RS14480 bf41a309c912123320317df0c97708e5 242 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 6 235 1.6E-85 T 16-09-2016 IPR002876 Transcriptional regulator TACO1-like BER92_RS14480 bf41a309c912123320317df0c97708e5 242 Gene3D G3DSA:3.30.1270.10 210 236 4.0E-38 T 16-09-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 BER92_RS14480 bf41a309c912123320317df0c97708e5 242 Gene3D G3DSA:3.30.1270.10 79 131 4.0E-38 T 16-09-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 BER92_RS14480 bf41a309c912123320317df0c97708e5 242 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 2 237 32.765 T 16-09-2016 IPR002876 Transcriptional regulator TACO1-like BER92_RS14480 bf41a309c912123320317df0c97708e5 242 PANTHER PTHR12532:SF0 1 239 4.6E-101 T 16-09-2016 BER92_RS14480 bf41a309c912123320317df0c97708e5 242 PANTHER PTHR12532 1 239 4.6E-101 T 16-09-2016 IPR002876 Transcriptional regulator TACO1-like BER92_RS14480 bf41a309c912123320317df0c97708e5 242 SUPERFAMILY SSF75625 7 236 1.96E-84 T 16-09-2016 IPR029072 YebC-like BER92_RS14480 bf41a309c912123320317df0c97708e5 242 Gene3D G3DSA:3.30.70.980 132 201 1.7E-23 T 16-09-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 PANTHER PTHR11592 26 182 6.8E-83 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 Pfam PF00255 Glutathione peroxidase 34 134 3.0E-31 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 SUPERFAMILY SSF52833 26 180 1.01E-47 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 PIRSF PIRSF000303 2 184 9.3E-55 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 ProSitePatterns PS00460 Glutathione peroxidases active site. 48 63 - T 16-09-2016 IPR029759 Glutathione peroxidase active site BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 Gene3D G3DSA:3.40.30.10 28 181 2.2E-51 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 PANTHER PTHR11592:SF40 26 182 6.8E-83 T 16-09-2016 BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 PRINTS PR01011 Glutathione peroxidase family signature 142 151 3.4E-14 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 PRINTS PR01011 Glutathione peroxidase family signature 81 97 3.4E-14 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS08130 5dfba441e2845560f397c172ec6ba1aa 185 PRINTS PR01011 Glutathione peroxidase family signature 46 63 3.4E-14 T 16-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 PANTHER PTHR22594 6 178 1.2E-233 T 16-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 PANTHER PTHR22594:SF6 197 463 1.2E-233 T 16-09-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 4 464 44.796 T 16-09-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 SUPERFAMILY SSF50249 16 100 3.81E-16 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 PANTHER PTHR22594 197 463 1.2E-233 T 16-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 Pfam PF01336 OB-fold nucleic acid binding domain 20 96 1.7E-9 T 16-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 Gene3D G3DSA:2.40.50.140 16 102 5.8E-15 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 SUPERFAMILY SSF55681 104 462 2.07E-93 T 16-09-2016 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 PANTHER PTHR22594:SF6 6 178 1.2E-233 T 16-09-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 Gene3D G3DSA:3.30.930.10 107 460 1.8E-108 T 16-09-2016 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 16 464 1.4E-187 T 16-09-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22|Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 457 1.4E-81 T 16-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 PRINTS PR01042 Aspartyl-tRNA synthetase signature 206 218 9.2E-14 T 16-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 PRINTS PR01042 Aspartyl-tRNA synthetase signature 379 395 9.2E-14 T 16-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 PRINTS PR01042 Aspartyl-tRNA synthetase signature 222 235 9.2E-14 T 16-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS08435 1ba792d97cb68f5d30d9d570761f467c 464 PRINTS PR01042 Aspartyl-tRNA synthetase signature 419 433 9.2E-14 T 16-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 Pfam PF05954 Phage late control gene D protein (GPD) 44 355 2.8E-80 T 16-09-2016 BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 22 354 2.7E-59 T 16-09-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 Gene3D G3DSA:2.40.50.230 435 530 4.8E-29 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 583 682 4.9E-27 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 PANTHER PTHR32305:SF7 16 538 1.4E-55 T 16-09-2016 BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 Gene3D G3DSA:3.55.50.10 112 217 6.2E-29 T 16-09-2016 BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 SUPERFAMILY SSF69279 400 416 1.38E-16 T 16-09-2016 BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 SUPERFAMILY SSF69279 220 356 1.38E-16 T 16-09-2016 BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 35 535 1.1E-73 T 16-09-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 SUPERFAMILY SSF69279 22 213 3.63E-48 T 16-09-2016 BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 SUPERFAMILY SSF69255 428 530 8.37E-23 T 16-09-2016 BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 PANTHER PTHR32305 16 538 1.4E-55 T 16-09-2016 BER92_RS00750 be278a023389cd9f19e7d91406f41b0f 919 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 724 885 8.6E-33 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 Pfam PF01431 Peptidase family M13 506 710 6.5E-69 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 Pfam PF05649 Peptidase family M13 78 454 1.9E-90 T 16-09-2016 IPR008753 Peptidase M13, N-terminal domain GO:0006508 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 PANTHER PTHR11733 69 713 1.2E-212 T 16-09-2016 IPR000718 Peptidase M13 GO:0004222|GO:0006508 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 SUPERFAMILY SSF55486 69 713 2.38E-197 T 16-09-2016 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 PANTHER PTHR11733:SF65 69 713 1.2E-212 T 16-09-2016 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 537 553 3.6E-23 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 498 510 3.6E-23 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 611 622 3.6E-23 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 516 528 3.6E-23 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 Gene3D G3DSA:3.40.390.10 336 457 2.7E-105 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS12410 b22c94762a0174780e7f54a89e082ae5 713 Gene3D G3DSA:3.40.390.10 497 713 2.7E-105 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS09325 33adb8d5e81058aaee3830208c8e8785 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 261 9.5E-48 T 16-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 BER92_RS09325 33adb8d5e81058aaee3830208c8e8785 265 Gene3D G3DSA:3.90.226.10 6 200 2.4E-54 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS09325 33adb8d5e81058aaee3830208c8e8785 265 SUPERFAMILY SSF52096 5 259 1.43E-67 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS09325 33adb8d5e81058aaee3830208c8e8785 265 Gene3D G3DSA:1.10.12.10 204 260 1.2E-10 T 16-09-2016 IPR014748 Crontonase, C-terminal BER92_RS09325 33adb8d5e81058aaee3830208c8e8785 265 PANTHER PTHR11941 2 259 1.0E-104 T 16-09-2016 BER92_RS09325 33adb8d5e81058aaee3830208c8e8785 265 PANTHER PTHR11941:SF86 2 259 1.0E-104 T 16-09-2016 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PANTHER PTHR30386 24 150 4.9E-63 T 16-09-2016 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PANTHER PTHR30386:SF4 24 150 4.9E-63 T 16-09-2016 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PANTHER PTHR30386:SF4 184 473 4.9E-63 T 16-09-2016 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 Pfam PF13437 HlyD family secretion protein 325 426 4.1E-19 T 16-09-2016 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PANTHER PTHR30386 184 473 4.9E-63 T 16-09-2016 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 Gene3D G3DSA:2.40.50.100 99 129 1.3E-15 T 16-09-2016 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 Gene3D G3DSA:2.40.50.100 322 356 1.3E-15 T 16-09-2016 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 Pfam PF13533 Biotin-lipoyl like 105 139 1.7E-7 T 16-09-2016 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 ProSitePatterns PS00543 HlyD family secretion proteins signature. 437 459 - T 16-09-2016 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 54 473 6.4E-119 T 16-09-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 107 127 6.7E-62 T 16-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 370 394 6.7E-62 T 16-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 337 358 6.7E-62 T 16-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 452 472 6.7E-62 T 16-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 65 88 6.7E-62 T 16-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 437 452 6.7E-62 T 16-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BER92_RS03105 0c67166a279306c1fe1c306224e5a9ef 473 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 394 417 6.7E-62 T 16-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BER92_RS05415 fc730286416449305bb7783dc295c0e9 161 PANTHER PTHR30346 1 160 1.2E-36 T 16-09-2016 BER92_RS05415 fc730286416449305bb7783dc295c0e9 161 PANTHER PTHR30346:SF6 1 160 1.2E-36 T 16-09-2016 BER92_RS05415 fc730286416449305bb7783dc295c0e9 161 Gene3D G3DSA:3.40.190.10 2 42 3.0E-8 T 16-09-2016 BER92_RS05415 fc730286416449305bb7783dc295c0e9 161 SUPERFAMILY SSF53850 2 159 2.79E-21 T 16-09-2016 BER92_RS05415 fc730286416449305bb7783dc295c0e9 161 Pfam PF03466 LysR substrate binding domain 2 159 1.4E-21 T 16-09-2016 IPR005119 LysR, substrate-binding BER92_RS05415 fc730286416449305bb7783dc295c0e9 161 Gene3D G3DSA:3.40.190.10 43 130 6.0E-18 T 16-09-2016 BER92_RS14555 5733255aa6d9e44ce83ee32dda214a14 474 Pfam PF05598 Transposase domain (DUF772) 78 152 3.2E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS14555 5733255aa6d9e44ce83ee32dda214a14 474 PANTHER PTHR33803 1 474 0.0 T 16-09-2016 BER92_RS14555 5733255aa6d9e44ce83ee32dda214a14 474 Pfam PF01609 Transposase DDE domain 303 440 1.5E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14555 5733255aa6d9e44ce83ee32dda214a14 474 PANTHER PTHR33803:SF1 1 474 0.0 T 16-09-2016 BER92_RS00830 12fed4f5234da879944676186d077487 152 Pfam PF05069 Phage virion morphogenesis family 3 147 1.4E-42 T 16-09-2016 IPR006522 Phage virion morphogensis protein BER92_RS00830 12fed4f5234da879944676186d077487 152 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 3 147 4.1E-33 T 16-09-2016 IPR006522 Phage virion morphogensis protein BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 PANTHER PTHR20854:SF5 1 250 6.3E-88 T 16-09-2016 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 10 254 5.1E-92 T 16-09-2016 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 86 99 - T 16-09-2016 IPR020583 Inositol monophosphatase, metal-binding site BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 Pfam PF00459 Inositol monophosphatase family 7 242 1.6E-47 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 Gene3D G3DSA:3.40.190.80 165 257 1.5E-38 T 16-09-2016 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 86 102 1.9E-6 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 1.9E-6 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 1.9E-6 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 213 227 - T 16-09-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 SUPERFAMILY SSF56655 6 258 2.62E-72 T 16-09-2016 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 PANTHER PTHR20854 1 250 6.3E-88 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS05685 7ebe44c54bf9cbf3f90aea16a77ec56e 266 Gene3D G3DSA:3.30.540.10 7 164 1.8E-44 T 16-09-2016 BER92_RS02510 567ea42a70fbc191ebc169b7f8fd298b 452 PIRSF PIRSF006060 1 451 5.9E-71 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS02510 567ea42a70fbc191ebc169b7f8fd298b 452 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 16-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BER92_RS02510 567ea42a70fbc191ebc169b7f8fd298b 452 PANTHER PTHR11785 9 452 2.7E-205 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS02510 567ea42a70fbc191ebc169b7f8fd298b 452 PANTHER PTHR11785:SF336 9 452 2.7E-205 T 16-09-2016 BER92_RS02510 567ea42a70fbc191ebc169b7f8fd298b 452 Pfam PF00324 Amino acid permease 18 449 4.5E-114 T 16-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 BER92_RS13465 382882a36e509ab2892cafdc636a59ca 141 SUPERFAMILY SSF47729 44 139 1.18E-13 T 16-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 BER92_RS13465 382882a36e509ab2892cafdc636a59ca 141 PANTHER PTHR33175 44 139 6.1E-40 T 16-09-2016 BER92_RS13465 382882a36e509ab2892cafdc636a59ca 141 Gene3D G3DSA:4.10.520.10 45 139 3.6E-15 T 16-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 BER92_RS13465 382882a36e509ab2892cafdc636a59ca 141 PANTHER PTHR33175:SF1 44 139 6.1E-40 T 16-09-2016 BER92_RS13465 382882a36e509ab2892cafdc636a59ca 141 SMART SM00411 44 141 6.2E-8 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS13465 382882a36e509ab2892cafdc636a59ca 141 Pfam PF00216 Bacterial DNA-binding protein 45 139 4.6E-15 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 SUPERFAMILY SSF56762 34 435 1.06E-134 T 16-09-2016 IPR029014 NiFe hydrogenase-like BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 Gene3D G3DSA:1.10.645.10 18 420 8.2E-65 T 16-09-2016 IPR029014 NiFe hydrogenase-like BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 PANTHER PTHR11993:SF10 207 430 3.4E-238 T 16-09-2016 BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 PANTHER PTHR11993:SF10 17 182 3.4E-238 T 16-09-2016 BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 61 72 - T 16-09-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 138 435 3.1E-119 T 16-09-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 PANTHER PTHR11993 207 430 3.4E-238 T 16-09-2016 BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 PANTHER PTHR11993 17 182 3.4E-238 T 16-09-2016 BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 17 435 49.032 T 16-09-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 BER92_RS07255 3563df0e7a36bcba8dd0d044854f2339 435 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 24 435 1.5E-181 T 16-09-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 BER92_RS06370 95e74018bfc56dcc3296a527c00bd296 409 SUPERFAMILY SSF53756 340 393 8.24E-33 T 16-09-2016 BER92_RS06370 95e74018bfc56dcc3296a527c00bd296 409 SUPERFAMILY SSF53756 16 309 8.24E-33 T 16-09-2016 BER92_RS06370 95e74018bfc56dcc3296a527c00bd296 409 PANTHER PTHR30372:SF0 16 399 1.2E-137 T 16-09-2016 BER92_RS06370 95e74018bfc56dcc3296a527c00bd296 409 Pfam PF02684 Lipid-A-disaccharide synthetase 17 361 3.9E-113 T 16-09-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 BER92_RS06370 95e74018bfc56dcc3296a527c00bd296 409 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 14 393 41.727 T 16-09-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 BER92_RS06370 95e74018bfc56dcc3296a527c00bd296 409 Gene3D G3DSA:3.40.50.2000 169 365 4.7E-9 T 16-09-2016 BER92_RS06370 95e74018bfc56dcc3296a527c00bd296 409 PANTHER PTHR30372 16 399 1.2E-137 T 16-09-2016 BER92_RS06370 95e74018bfc56dcc3296a527c00bd296 409 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 16 391 9.6E-115 T 16-09-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 BER92_RS09250 01b2c7db26c5046a5851d8c421c877a2 191 PANTHER PTHR33803 21 191 1.2E-125 T 16-09-2016 BER92_RS09250 01b2c7db26c5046a5851d8c421c877a2 191 PANTHER PTHR33803:SF1 21 191 1.2E-125 T 16-09-2016 BER92_RS09250 01b2c7db26c5046a5851d8c421c877a2 191 Pfam PF01609 Transposase DDE domain 21 157 2.2E-8 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 PANTHER PTHR10314 3 306 1.1E-113 T 16-09-2016 BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 303 6.5E-130 T 16-09-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 Gene3D G3DSA:3.40.50.1100 42 142 2.7E-41 T 16-09-2016 BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 16-09-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 291 2.0E-63 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 SUPERFAMILY SSF53686 2 305 1.7E-92 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 303 8.6E-123 T 16-09-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 Gene3D G3DSA:3.40.50.1100 148 308 2.9E-67 T 16-09-2016 BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 Gene3D G3DSA:3.40.50.1100 2 41 2.9E-67 T 16-09-2016 BER92_RS16770 c4e82e851756f662b4ba2d22b72ca3d7 319 PANTHER PTHR10314:SF56 3 306 1.1E-113 T 16-09-2016 BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 508 2.1E-117 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PANTHER PTHR11206:SF90 425 463 5.7E-81 T 16-09-2016 BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PANTHER PTHR11206 68 84 5.7E-81 T 16-09-2016 BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PANTHER PTHR11206 215 402 5.7E-81 T 16-09-2016 BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PANTHER PTHR11206 487 514 5.7E-81 T 16-09-2016 BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 Pfam PF03023 MviN-like protein 26 492 2.1E-120 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PRINTS PR01806 Virulence factor MviN signature 50 66 1.7E-70 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PRINTS PR01806 Virulence factor MviN signature 430 447 1.7E-70 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PRINTS PR01806 Virulence factor MviN signature 355 374 1.7E-70 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PRINTS PR01806 Virulence factor MviN signature 31 50 1.7E-70 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PRINTS PR01806 Virulence factor MviN signature 257 283 1.7E-70 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PRINTS PR01806 Virulence factor MviN signature 155 176 1.7E-70 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PRINTS PR01806 Virulence factor MviN signature 131 155 1.7E-70 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PANTHER PTHR11206:SF90 68 84 5.7E-81 T 16-09-2016 BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PANTHER PTHR11206:SF90 487 514 5.7E-81 T 16-09-2016 BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PANTHER PTHR11206:SF90 215 402 5.7E-81 T 16-09-2016 BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PANTHER PTHR11206 425 463 5.7E-81 T 16-09-2016 BER92_RS14840 7a7e51e80edd0fb607bf388a0b8715bb 530 PIRSF PIRSF002869 1 528 3.6E-142 T 16-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ BER92_RS05270 583a50340b93d8260b01a8dd5c96a1b7 118 PIRSF PIRSF002134 1 118 4.5E-41 T 16-09-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05270 583a50340b93d8260b01a8dd5c96a1b7 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 8.8E-30 T 16-09-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05270 583a50340b93d8260b01a8dd5c96a1b7 118 Gene3D G3DSA:4.10.910.10 76 118 2.7E-24 T 16-09-2016 IPR027437 30s ribosomal protein S13, C-terminal BER92_RS05270 583a50340b93d8260b01a8dd5c96a1b7 118 Gene3D G3DSA:1.10.8.50 1 71 1.5E-26 T 16-09-2016 BER92_RS05270 583a50340b93d8260b01a8dd5c96a1b7 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 16-09-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 BER92_RS05270 583a50340b93d8260b01a8dd5c96a1b7 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 25.475 T 16-09-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05270 583a50340b93d8260b01a8dd5c96a1b7 118 SUPERFAMILY SSF46946 2 114 6.18E-43 T 16-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 BER92_RS05270 583a50340b93d8260b01a8dd5c96a1b7 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 7.9E-51 T 16-09-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05270 583a50340b93d8260b01a8dd5c96a1b7 118 PANTHER PTHR10871 1 118 6.7E-63 T 16-09-2016 BER92_RS06095 e423995ea1f63fcfd7682798d2d2965c 264 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 80 246 2.7E-32 T 16-09-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 BER92_RS06095 e423995ea1f63fcfd7682798d2d2965c 264 PANTHER PTHR34136 17 261 2.9E-86 T 16-09-2016 BER92_RS06095 e423995ea1f63fcfd7682798d2d2965c 264 PANTHER PTHR34136:SF1 17 261 2.9E-86 T 16-09-2016 BER92_RS06095 e423995ea1f63fcfd7682798d2d2965c 264 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 81 245 2.6E-51 T 16-09-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 168 3.3E-24 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 SUPERFAMILY SSF56935 495 644 7.63E-85 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 SUPERFAMILY SSF56935 380 444 7.63E-85 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 SUPERFAMILY SSF56935 41 233 7.63E-85 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 SUPERFAMILY SSF56935 305 353 7.63E-85 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 SUPERFAMILY SSF56935 687 961 7.63E-85 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 PANTHER PTHR30069 17 447 4.0E-126 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 PANTHER PTHR30069 469 675 4.0E-126 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 PANTHER PTHR30069:SF7 17 447 4.0E-126 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 PANTHER PTHR30069:SF7 469 675 4.0E-126 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 PANTHER PTHR30069 697 867 4.0E-126 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 PANTHER PTHR30069:SF7 697 867 4.0E-126 T 16-09-2016 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 Gene3D G3DSA:2.170.130.10 56 171 1.6E-31 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 Gene3D G3DSA:2.40.170.20 172 231 3.5E-74 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 Gene3D G3DSA:2.40.170.20 475 646 3.5E-74 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 Gene3D G3DSA:2.40.170.20 281 425 3.5E-74 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 Gene3D G3DSA:2.40.170.20 689 952 3.5E-74 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03380 99c0eb02e89a7e02b179e25c95d631e2 962 Pfam PF00593 TonB dependent receptor 602 958 5.3E-27 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 SMART SM00863 659 702 5.2E-22 T 16-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 211 222 4.0E-32 T 16-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 238 251 4.0E-32 T 16-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 284 300 4.0E-32 T 16-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 308 321 4.0E-32 T 16-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 80 91 4.0E-32 T 16-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 SUPERFAMILY SSF55681 7 257 6.46E-105 T 16-09-2016 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 SUPERFAMILY SSF55186 558 717 1.44E-53 T 16-09-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 12 860 0.0 T 16-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 SUPERFAMILY SSF50447 458 554 1.2E-15 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 659 702 1.7E-17 T 16-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 Pfam PF01411 tRNA synthetases class II (A) 12 561 1.5E-211 T 16-09-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 Gene3D G3DSA:3.30.930.10 7 253 1.8E-119 T 16-09-2016 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 Pfam PF02272 DHHA1 domain 806 871 5.7E-12 T 16-09-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 SUPERFAMILY SSF101353 258 447 2.09E-58 T 16-09-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 PANTHER PTHR11777 2 882 0.0 T 16-09-2016 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 881 193.344 T 16-09-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 BER92_RS11035 e2e44754493c8df45f64458101d6f047 882 PANTHER PTHR11777:SF9 2 882 0.0 T 16-09-2016 BER92_RS02980 4fa3e6b7a92c95d6d5f1642bb0116b17 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 82 4.2E-20 T 16-09-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 BER92_RS02980 4fa3e6b7a92c95d6d5f1642bb0116b17 91 PANTHER PTHR33677 1 91 4.4E-30 T 16-09-2016 BER92_RS02980 4fa3e6b7a92c95d6d5f1642bb0116b17 91 Gene3D G3DSA:1.10.357.10 16 83 8.0E-4 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 Pfam PF01339 CheB methylesterase 172 350 3.8E-57 T 16-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 Gene3D G3DSA:3.40.50.180 166 355 8.6E-78 T 16-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 SUPERFAMILY SSF52738 167 354 2.62E-69 T 16-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 7 355 40.973 T 16-09-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 SUPERFAMILY SSF52172 6 111 3.42E-28 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 Pfam PF00072 Response regulator receiver domain 9 111 7.1E-24 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 PANTHER PTHR24421 1 358 3.8E-179 T 16-09-2016 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 SMART SM00448 7 119 9.2E-21 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 PIRSF PIRSF000876 4 358 5.3E-135 T 16-09-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 PANTHER PTHR24421:SF21 1 358 3.8E-179 T 16-09-2016 BER92_RS09465 532db4c438ec05fab85df2e2065e5051 358 Gene3D G3DSA:3.40.50.2300 6 115 8.3E-28 T 16-09-2016 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 SUPERFAMILY SSF51735 1 111 7.09E-22 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 1.0E-13 T 16-09-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 219 332 9.2E-15 T 16-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 5.2E-67 T 16-09-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 Gene3D G3DSA:3.40.1010.10 216 324 1.1E-18 T 16-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 Pfam PF13241 Putative NAD(P)-binding 6 115 1.2E-25 T 16-09-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 SUPERFAMILY SSF53790 216 331 1.4E-18 T 16-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 1.0E-8 T 16-09-2016 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 PANTHER PTHR35330 1 226 1.4E-50 T 16-09-2016 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 Gene3D G3DSA:3.40.50.720 1 110 1.3E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 SUPERFAMILY SSF75615 114 209 2.35E-25 T 16-09-2016 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 Gene3D G3DSA:3.30.160.110 113 147 3.0E-18 T 16-09-2016 BER92_RS10020 87e0d0ad74531c969f9ca780cda47e61 332 Gene3D G3DSA:1.10.8.210 150 209 1.2E-9 T 16-09-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 BER92_RS08000 24bf9e58a33c36e5690ac66b8d87a390 361 PANTHER PTHR30386:SF8 14 338 8.4E-58 T 16-09-2016 BER92_RS08000 24bf9e58a33c36e5690ac66b8d87a390 361 Gene3D G3DSA:2.40.50.100 177 214 2.4E-12 T 16-09-2016 BER92_RS08000 24bf9e58a33c36e5690ac66b8d87a390 361 Gene3D G3DSA:2.40.50.100 63 96 2.4E-12 T 16-09-2016 BER92_RS08000 24bf9e58a33c36e5690ac66b8d87a390 361 Pfam PF13533 Biotin-lipoyl like 65 97 1.5E-8 T 16-09-2016 BER92_RS08000 24bf9e58a33c36e5690ac66b8d87a390 361 PANTHER PTHR30386 14 338 8.4E-58 T 16-09-2016 BER92_RS08000 24bf9e58a33c36e5690ac66b8d87a390 361 SUPERFAMILY SSF111369 65 214 7.19E-9 T 16-09-2016 BER92_RS08000 24bf9e58a33c36e5690ac66b8d87a390 361 Pfam PF13437 HlyD family secretion protein 185 275 5.8E-10 T 16-09-2016 BER92_RS12495 356ae153ad57432f8f8cbd5ecced7f43 370 Gene3D G3DSA:1.10.443.10 293 364 2.6E-7 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS12495 356ae153ad57432f8f8cbd5ecced7f43 370 Gene3D G3DSA:1.10.150.130 163 261 7.0E-5 T 16-09-2016 IPR023109 Integrase/recombinase, N-terminal BER92_RS12495 356ae153ad57432f8f8cbd5ecced7f43 370 SUPERFAMILY SSF56349 162 365 2.59E-20 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS09810 4755758c0c84507aabb90f5c085e19cf 167 Pfam PF11745 Protein of unknown function (DUF3304) 22 140 3.5E-12 T 16-09-2016 IPR021733 Protein of unknown function DUF3304 BER92_RS00105 814f315290d04a359e5277f3010bc2f4 230 Gene3D G3DSA:1.20.1540.10 14 217 8.0E-37 T 16-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BER92_RS00105 814f315290d04a359e5277f3010bc2f4 230 SUPERFAMILY SSF144091 13 220 1.44E-32 T 16-09-2016 BER92_RS00105 814f315290d04a359e5277f3010bc2f4 230 Pfam PF01694 Rhomboid family 64 218 1.3E-34 T 16-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BER92_RS00105 814f315290d04a359e5277f3010bc2f4 230 PANTHER PTHR22936 40 230 3.0E-37 T 16-09-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 SUPERFAMILY SSF55200 71 158 6.15E-31 T 16-09-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 Gene3D G3DSA:3.30.110.10 67 158 5.5E-38 T 16-09-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 3 158 1.1E-61 T 16-09-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 Gene3D G3DSA:3.10.20.80 2 66 6.0E-31 T 16-09-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 158 28.028 T 16-09-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 ProSitePatterns PS00938 Initiation factor 3 signature. 46 59 - T 16-09-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 71 156 3.1E-36 T 16-09-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 PANTHER PTHR10938 1 158 9.1E-62 T 16-09-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 SUPERFAMILY SSF54364 2 66 6.15E-26 T 16-09-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 BER92_RS06000 731e1c58bfe96f0b1494d18b93e67bda 159 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 2 64 8.2E-27 T 16-09-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 SUPERFAMILY SSF55681 84 270 9.28E-48 T 16-09-2016 BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 Pfam PF08279 HTH domain 9 54 4.8E-10 T 16-09-2016 IPR013196 Helix-turn-helix, type 11 BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 Gene3D G3DSA:3.30.930.10 83 270 9.9E-49 T 16-09-2016 BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 Pfam PF02237 Biotin protein ligase C terminal domain 274 319 3.4E-7 T 16-09-2016 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15 BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 SUPERFAMILY SSF46785 5 56 1.31E-8 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 87 318 1.9E-48 T 16-09-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 SUPERFAMILY SSF50037 275 319 6.87E-7 T 16-09-2016 IPR008988 Transcriptional repressor, C-terminal BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 Gene3D G3DSA:2.30.30.100 274 320 3.3E-12 T 16-09-2016 BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 PANTHER PTHR12835 4 319 4.3E-70 T 16-09-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 2 319 30.19 T 16-09-2016 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 Gene3D G3DSA:1.10.10.10 5 58 1.1E-17 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS01260 db214a2055389936f47858f4a0984ddf 321 Pfam PF03099 Biotin/lipoate A/B protein ligase family 102 209 2.0E-9 T 16-09-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 Pfam PF00344 SecY translocase 76 422 1.5E-108 T 16-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PIRSF PIRSF004557 14 447 6.5E-115 T 16-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 16-09-2016 IPR030659 SecY conserved site BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PANTHER PTHR10906:SF2 18 453 2.0E-213 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 439 27.962 T 16-09-2016 IPR026593 Protein translocase subunit SecY BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 ProSitePatterns PS00756 Protein secY signature 2. 175 192 - T 16-09-2016 IPR030659 SecY conserved site BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 SUPERFAMILY SSF103491 15 430 9.15E-122 T 16-09-2016 IPR023201 SecY subunit domain BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PANTHER PTHR10906 18 453 2.0E-213 T 16-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PRINTS PR00303 Preprotein translocase SecY subunit signature 274 293 4.5E-88 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PRINTS PR00303 Preprotein translocase SecY subunit signature 321 343 4.5E-88 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PRINTS PR00303 Preprotein translocase SecY subunit signature 408 426 4.5E-88 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 4.5E-88 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 4.5E-88 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PRINTS PR00303 Preprotein translocase SecY subunit signature 182 205 4.5E-88 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 4.5E-88 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PRINTS PR00303 Preprotein translocase SecY subunit signature 156 181 4.5E-88 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 PRINTS PR00303 Preprotein translocase SecY subunit signature 376 394 4.5E-88 T 16-09-2016 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 434 2.5E-124 T 16-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 BER92_RS05265 848f1ebe12054a2bd043924511a8d761 455 Gene3D G3DSA:1.10.3370.10 16 443 1.7E-154 T 16-09-2016 IPR023201 SecY subunit domain BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 ProSitePatterns PS00356 LacI-type HTH domain signature. 17 35 - T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 Pfam PF13377 Periplasmic binding protein-like domain 182 345 2.0E-38 T 16-09-2016 BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 SUPERFAMILY SSF53822 75 349 4.53E-65 T 16-09-2016 IPR028082 Periplasmic binding protein-like I BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 Gene3D G3DSA:3.40.50.2300 187 323 5.3E-52 T 16-09-2016 BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 SUPERFAMILY SSF47413 14 72 8.3E-17 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 Gene3D G3DSA:1.10.260.40 15 66 4.6E-22 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 Gene3D G3DSA:3.40.50.2300 67 186 2.1E-25 T 16-09-2016 BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 Pfam PF00356 Bacterial regulatory proteins, lacI family 16 61 5.1E-19 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 PANTHER PTHR30146:SF4 13 349 2.2E-118 T 16-09-2016 BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 SMART SM00354 14 84 1.5E-24 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS18995 57318c36a1301ca9b58f4ffd49492bf3 357 PANTHER PTHR30146 13 349 2.2E-118 T 16-09-2016 BER92_RS18735 9f89fe882f92bb6e12a0d5f44b4b79df 280 PANTHER PTHR24220:SF557 21 277 5.7E-77 T 16-09-2016 BER92_RS18735 9f89fe882f92bb6e12a0d5f44b4b79df 280 PANTHER PTHR24220 21 277 5.7E-77 T 16-09-2016 BER92_RS18735 9f89fe882f92bb6e12a0d5f44b4b79df 280 SUPERFAMILY SSF52540 18 107 5.13E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18735 9f89fe882f92bb6e12a0d5f44b4b79df 280 SUPERFAMILY SSF52540 134 256 5.13E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18735 9f89fe882f92bb6e12a0d5f44b4b79df 280 Pfam PF00005 ABC transporter 35 192 5.6E-20 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS18735 9f89fe882f92bb6e12a0d5f44b4b79df 280 SMART SM00382 44 249 1.5E-12 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS18735 9f89fe882f92bb6e12a0d5f44b4b79df 280 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS18735 9f89fe882f92bb6e12a0d5f44b4b79df 280 Gene3D G3DSA:3.40.50.300 18 256 5.9E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 PANTHER PTHR30620 5 437 2.7E-291 T 16-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 PRINTS PR00133 Glycosyl hydrolase family 3 signature 187 203 1.1E-9 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 PRINTS PR00133 Glycosyl hydrolase family 3 signature 91 110 1.1E-9 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 PRINTS PR00133 Glycosyl hydrolase family 3 signature 258 276 1.1E-9 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 PANTHER PTHR30620 590 868 2.7E-291 T 16-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 Gene3D G3DSA:3.40.50.1700 611 765 2.7E-71 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 Gene3D G3DSA:3.40.50.1700 362 442 2.7E-71 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 SUPERFAMILY SSF56988 462 639 1.7E-21 T 16-09-2016 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 PANTHER PTHR30620:SF8 590 868 2.7E-291 T 16-09-2016 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 PANTHER PTHR30620:SF8 5 437 2.7E-291 T 16-09-2016 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 SUPERFAMILY SSF52279 376 443 3.66E-50 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 SUPERFAMILY SSF52279 611 765 3.66E-50 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 SUPERFAMILY SSF51445 32 375 6.74E-92 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 50 333 4.3E-43 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 Pfam PF07691 PA14 domain 459 612 2.7E-29 T 16-09-2016 IPR011658 PA14 domain BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 Gene3D G3DSA:3.20.20.300 31 350 2.2E-103 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 SMART SM00758 459 613 2.2E-21 T 16-09-2016 IPR011658 PA14 domain BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 Pfam PF14310 Fibronectin type III-like domain 799 865 2.0E-20 T 16-09-2016 IPR026891 Fibronectin type III-like domain BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 SMART SM01217 799 867 1.1E-27 T 16-09-2016 IPR026891 Fibronectin type III-like domain BER92_RS13775 fac7d8e6d4fe73904f53c38bef798f21 889 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 376 762 2.3E-58 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS11800 5d99a4e845e07ad2c7f3d32f45252769 289 Pfam PF13683 Integrase core domain 207 272 2.3E-28 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS11800 5d99a4e845e07ad2c7f3d32f45252769 289 PANTHER PTHR24559:SF185 189 286 9.0E-89 T 16-09-2016 BER92_RS11800 5d99a4e845e07ad2c7f3d32f45252769 289 PANTHER PTHR24559:SF185 28 123 9.0E-89 T 16-09-2016 BER92_RS11800 5d99a4e845e07ad2c7f3d32f45252769 289 SUPERFAMILY SSF53098 190 276 7.13E-20 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11800 5d99a4e845e07ad2c7f3d32f45252769 289 PANTHER PTHR24559 189 286 9.0E-89 T 16-09-2016 BER92_RS11800 5d99a4e845e07ad2c7f3d32f45252769 289 PANTHER PTHR24559 28 123 9.0E-89 T 16-09-2016 BER92_RS11800 5d99a4e845e07ad2c7f3d32f45252769 289 Gene3D G3DSA:3.30.420.10 190 273 5.0E-21 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11800 5d99a4e845e07ad2c7f3d32f45252769 289 Pfam PF13276 HTH-like domain 46 97 2.9E-10 T 16-09-2016 IPR025948 HTH-like domain BER92_RS05865 018239de796976d98d475b37fd77dd25 189 SMART SM00867 29 187 3.4E-39 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS05865 018239de796976d98d475b37fd77dd25 189 PANTHER PTHR34406 5 187 2.4E-47 T 16-09-2016 BER92_RS05865 018239de796976d98d475b37fd77dd25 189 SUPERFAMILY SSF101874 31 187 3.92E-35 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS05865 018239de796976d98d475b37fd77dd25 189 PANTHER PTHR34406:SF1 5 187 2.4E-47 T 16-09-2016 BER92_RS05865 018239de796976d98d475b37fd77dd25 189 Gene3D G3DSA:2.40.128.110 36 187 4.1E-32 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS05865 018239de796976d98d475b37fd77dd25 189 Pfam PF04264 YceI-like domain 47 183 1.8E-25 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS12050 07cb46dd99d57463271d73272c5fa332 232 SUPERFAMILY SSF52833 1 81 5.83E-19 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS12050 07cb46dd99d57463271d73272c5fa332 232 Pfam PF00043 Glutathione S-transferase, C-terminal domain 145 211 2.3E-8 T 16-09-2016 IPR004046 Glutathione S-transferase, C-terminal BER92_RS12050 07cb46dd99d57463271d73272c5fa332 232 Gene3D G3DSA:3.40.30.10 2 82 1.1E-19 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS12050 07cb46dd99d57463271d73272c5fa332 232 PANTHER PTHR11260 1 225 2.9E-117 T 16-09-2016 BER92_RS12050 07cb46dd99d57463271d73272c5fa332 232 PANTHER PTHR11260:SF282 1 225 2.9E-117 T 16-09-2016 BER92_RS12050 07cb46dd99d57463271d73272c5fa332 232 SUPERFAMILY SSF47616 89 222 6.26E-23 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS12050 07cb46dd99d57463271d73272c5fa332 232 Gene3D G3DSA:1.20.1050.10 92 216 3.0E-24 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS12050 07cb46dd99d57463271d73272c5fa332 232 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 74 6.5E-13 T 16-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 SUPERFAMILY SSF53098 3 156 1.09E-46 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 PANTHER PTHR30194 1 171 1.2E-60 T 16-09-2016 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 Gene3D G3DSA:3.30.420.10 3 156 5.4E-54 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 152 7.4E-48 T 16-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 156 2.4E-50 T 16-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 115 149 - T 16-09-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 140 152 1.0E-33 T 16-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 1.0E-33 T 16-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 109 128 1.0E-33 T 16-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 63 79 1.0E-33 T 16-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 85 101 1.0E-33 T 16-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BER92_RS14475 e73486d9258e176bf2c08aa2c65e6f86 174 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 155 44.468 T 16-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BER92_RS10630 b3f5fc97d301cc77886a78278d4a650e 327 Pfam PF01609 Transposase DDE domain 135 315 4.1E-29 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10630 b3f5fc97d301cc77886a78278d4a650e 327 Pfam PF05598 Transposase domain (DUF772) 50 122 3.7E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS10630 b3f5fc97d301cc77886a78278d4a650e 327 PANTHER PTHR35604:SF2 2 327 8.1E-236 T 16-09-2016 BER92_RS10630 b3f5fc97d301cc77886a78278d4a650e 327 PANTHER PTHR35604 2 327 8.1E-236 T 16-09-2016 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 326 347 - T 16-09-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 Gene3D G3DSA:3.10.50.40 280 407 5.3E-40 T 16-09-2016 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 Pfam PF13623 SurA N-terminal domain 2 159 2.3E-25 T 16-09-2016 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 SUPERFAMILY SSF54534 283 389 8.5E-31 T 16-09-2016 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 Pfam PF13145 PPIC-type PPIASE domain 397 512 1.7E-7 T 16-09-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 PANTHER PTHR10657:SF11 18 187 7.6E-178 T 16-09-2016 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 PANTHER PTHR10657:SF11 261 544 7.6E-178 T 16-09-2016 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 PANTHER PTHR10657 261 544 7.6E-178 T 16-09-2016 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 Pfam PF13616 PPIC-type PPIASE domain 280 388 3.9E-30 T 16-09-2016 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 PANTHER PTHR10657 18 187 7.6E-178 T 16-09-2016 BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 SUPERFAMILY SSF109998 221 258 6.67E-20 T 16-09-2016 IPR027304 Trigger factor/SurA domain BER92_RS14395 0820bff559abbc359fa1c752a98de89f 656 SUPERFAMILY SSF109998 68 188 6.67E-20 T 16-09-2016 IPR027304 Trigger factor/SurA domain BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 SUPERFAMILY SSF46929 147 191 1.96E-7 T 16-09-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 PANTHER PTHR33796 2 194 8.8E-72 T 16-09-2016 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 Pfam PF07499 RuvA, C-terminal domain 148 191 6.7E-8 T 16-09-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 Gene3D G3DSA:2.40.50.140 2 64 3.5E-24 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 SMART SM00278 108 127 0.034 T 16-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 SMART SM00278 73 92 8.8 T 16-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 Gene3D G3DSA:1.10.8.10 148 190 9.3E-13 T 16-09-2016 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 SUPERFAMILY SSF50249 2 63 1.26E-16 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 Pfam PF01330 RuvA N terminal domain 2 62 7.8E-18 T 16-09-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 Pfam PF14520 Helix-hairpin-helix domain 72 130 2.0E-17 T 16-09-2016 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 193 7.2E-48 T 16-09-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 Gene3D G3DSA:1.10.150.20 68 136 3.2E-28 T 16-09-2016 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 SUPERFAMILY SSF47781 66 134 4.36E-20 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS14470 b7166baf1b469cbde865ec6d3a73e656 194 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 193 29.643 T 16-09-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 16-09-2016 IPR023673 Ribosomal protein L1, conserved site BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 Gene3D G3DSA:3.30.190.20 161 226 3.4E-44 T 16-09-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 Gene3D G3DSA:3.30.190.20 18 67 3.4E-44 T 16-09-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 PANTHER PTHR23105 16 229 1.8E-73 T 16-09-2016 BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 Pfam PF00687 Ribosomal protein L1p/L10e family 29 220 6.5E-45 T 16-09-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 Gene3D G3DSA:3.40.50.790 68 159 8.4E-35 T 16-09-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 PANTHER PTHR23105:SF5 16 229 1.8E-73 T 16-09-2016 BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 PIRSF PIRSF002155 1 227 1.9E-70 T 16-09-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 9.5E-100 T 16-09-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 40.336 T 16-09-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 BER92_RS05115 24aced6f726adbf08afa3eaaa9eba1a2 232 SUPERFAMILY SSF56808 5 225 2.35E-74 T 16-09-2016 IPR023674 Ribosomal protein L1-like BER92_RS13785 1e59dd4a3d80701d8319fa1484637edd 87 SUPERFAMILY SSF46689 2 82 5.55E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13785 1e59dd4a3d80701d8319fa1484637edd 87 Pfam PF01527 Transposase 2 70 4.1E-22 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS13785 1e59dd4a3d80701d8319fa1484637edd 87 PANTHER PTHR33609 1 87 8.5E-45 T 16-09-2016 BER92_RS13785 1e59dd4a3d80701d8319fa1484637edd 87 Gene3D G3DSA:1.10.10.60 7 83 3.0E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS19300 1e59dd4a3d80701d8319fa1484637edd 87 SUPERFAMILY SSF46689 2 82 5.55E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS19300 1e59dd4a3d80701d8319fa1484637edd 87 Pfam PF01527 Transposase 2 70 4.1E-22 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS19300 1e59dd4a3d80701d8319fa1484637edd 87 PANTHER PTHR33609 1 87 8.5E-45 T 16-09-2016 BER92_RS19300 1e59dd4a3d80701d8319fa1484637edd 87 Gene3D G3DSA:1.10.10.60 7 83 3.0E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03875 1e59dd4a3d80701d8319fa1484637edd 87 SUPERFAMILY SSF46689 2 82 5.55E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03875 1e59dd4a3d80701d8319fa1484637edd 87 Pfam PF01527 Transposase 2 70 4.1E-22 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS03875 1e59dd4a3d80701d8319fa1484637edd 87 PANTHER PTHR33609 1 87 8.5E-45 T 16-09-2016 BER92_RS03875 1e59dd4a3d80701d8319fa1484637edd 87 Gene3D G3DSA:1.10.10.60 7 83 3.0E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS05770 1e59dd4a3d80701d8319fa1484637edd 87 SUPERFAMILY SSF46689 2 82 5.55E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS05770 1e59dd4a3d80701d8319fa1484637edd 87 Pfam PF01527 Transposase 2 70 4.1E-22 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS05770 1e59dd4a3d80701d8319fa1484637edd 87 PANTHER PTHR33609 1 87 8.5E-45 T 16-09-2016 BER92_RS05770 1e59dd4a3d80701d8319fa1484637edd 87 Gene3D G3DSA:1.10.10.60 7 83 3.0E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS15495 1e59dd4a3d80701d8319fa1484637edd 87 SUPERFAMILY SSF46689 2 82 5.55E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS15495 1e59dd4a3d80701d8319fa1484637edd 87 Pfam PF01527 Transposase 2 70 4.1E-22 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS15495 1e59dd4a3d80701d8319fa1484637edd 87 PANTHER PTHR33609 1 87 8.5E-45 T 16-09-2016 BER92_RS15495 1e59dd4a3d80701d8319fa1484637edd 87 Gene3D G3DSA:1.10.10.60 7 83 3.0E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13540 1e59dd4a3d80701d8319fa1484637edd 87 SUPERFAMILY SSF46689 2 82 5.55E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13540 1e59dd4a3d80701d8319fa1484637edd 87 Pfam PF01527 Transposase 2 70 4.1E-22 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS13540 1e59dd4a3d80701d8319fa1484637edd 87 PANTHER PTHR33609 1 87 8.5E-45 T 16-09-2016 BER92_RS13540 1e59dd4a3d80701d8319fa1484637edd 87 Gene3D G3DSA:1.10.10.60 7 83 3.0E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 12 127 1.9E-26 T 16-09-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 PANTHER PTHR11606 24 349 3.0E-148 T 16-09-2016 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 SMART SM00839 143 350 2.0E-76 T 16-09-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 PANTHER PTHR11606:SF3 24 349 3.0E-148 T 16-09-2016 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 SUPERFAMILY SSF53223 3 143 8.0E-47 T 16-09-2016 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 Gene3D G3DSA:3.40.192.10 2 146 3.3E-63 T 16-09-2016 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 SUPERFAMILY SSF51735 141 344 1.2E-49 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 PIRSF PIRSF000188 1 351 2.3E-151 T 16-09-2016 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 217 299 1.5E-12 T 16-09-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 73 86 - T 16-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 65 79 2.3E-17 T 16-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 285 296 2.3E-17 T 16-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 131 153 2.3E-17 T 16-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 175 195 2.3E-17 T 16-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 BER92_RS07095 ceadfda674c9f05d8c7981b322d6236f 366 Gene3D G3DSA:3.40.50.720 147 335 8.3E-49 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PANTHER PTHR24322 161 193 1.0E-51 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PANTHER PTHR24322 15 145 1.0E-51 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 Gene3D G3DSA:3.40.50.720 5 254 6.4E-86 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 2.8E-7 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 2.8E-7 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 2.8E-7 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 SUPERFAMILY SSF51735 9 255 4.12E-80 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.0E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.0E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.0E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.0E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.0E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.0E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS00165 4a4782df69d71ada1d42e2a4f9fefda4 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 253 5.5E-62 T 16-09-2016 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 PANTHER PTHR11082:SF25 1 318 3.2E-141 T 16-09-2016 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 Gene3D G3DSA:3.20.20.70 9 244 3.9E-84 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 PANTHER PTHR11082 1 318 3.2E-141 T 16-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 SUPERFAMILY SSF51395 10 318 1.98E-90 T 16-09-2016 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 Pfam PF01207 Dihydrouridine synthase (Dus) 13 316 1.1E-103 T 16-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.354 T 16-09-2016 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 16-09-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 318 2.1E-119 T 16-09-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 PIRSF PIRSF006621 1 325 7.3E-108 T 16-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BER92_RS04595 0126c036d156fb92539f62b00e230ed2 332 Gene3D G3DSA:1.10.1200.80 255 320 3.5E-19 T 16-09-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 BER92_RS01055 e419201fd00b6045de0c07ab9b34c401 593 Gene3D G3DSA:2.40.160.50 243 590 1.8E-15 T 16-09-2016 BER92_RS01055 e419201fd00b6045de0c07ab9b34c401 593 Pfam PF07244 Surface antigen variable number repeat 138 185 3.7E-5 T 16-09-2016 IPR010827 Surface antigen variable number GO:0019867 BER92_RS01055 e419201fd00b6045de0c07ab9b34c401 593 Pfam PF01103 Surface antigen 304 582 2.3E-31 T 16-09-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 BER92_RS01055 e419201fd00b6045de0c07ab9b34c401 593 PANTHER PTHR12815:SF12 10 593 9.4E-240 T 16-09-2016 BER92_RS01055 e419201fd00b6045de0c07ab9b34c401 593 PANTHER PTHR12815 10 593 9.4E-240 T 16-09-2016 BER92_RS16915 9e34110d1d4df3b3ad19472af3c0138f 230 Gene3D G3DSA:1.10.3720.10 9 226 1.5E-43 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS16915 9e34110d1d4df3b3ad19472af3c0138f 230 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 14 223 2.1E-65 T 16-09-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 BER92_RS16915 9e34110d1d4df3b3ad19472af3c0138f 230 SUPERFAMILY SSF161098 5 221 5.23E-48 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS16915 9e34110d1d4df3b3ad19472af3c0138f 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 223 2.0E-20 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS16915 9e34110d1d4df3b3ad19472af3c0138f 230 PANTHER PTHR30183 3 223 3.0E-80 T 16-09-2016 BER92_RS11070 f0189925b4bc1ac024e28b5eb6618d71 103 PANTHER PTHR30624:SF10 32 97 1.4E-12 T 16-09-2016 BER92_RS11070 f0189925b4bc1ac024e28b5eb6618d71 103 SUPERFAMILY SSF111283 40 98 1.44E-6 T 16-09-2016 BER92_RS11070 f0189925b4bc1ac024e28b5eb6618d71 103 PANTHER PTHR30624 32 97 1.4E-12 T 16-09-2016 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 SUPERFAMILY SSF55874 262 424 2.75E-37 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 Gene3D G3DSA:1.10.287.130 202 259 4.8E-20 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 Gene3D G3DSA:3.30.450.20 100 201 3.2E-6 T 16-09-2016 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 SMART SM00388 209 273 1.1E-20 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 Pfam PF11808 Domain of unknown function (DUF3329) 8 93 2.9E-21 T 16-09-2016 IPR021766 Protein of unknown function DUF3329 GO:0004673 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 SUPERFAMILY SSF47384 196 273 1.14E-18 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 98 424 9.6E-124 T 16-09-2016 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 PANTHER PTHR24423 5 434 2.1E-132 T 16-09-2016 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 SUPERFAMILY SSF55785 89 200 9.57E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 Pfam PF00512 His Kinase A (phospho-acceptor) domain 210 272 8.2E-18 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 Gene3D G3DSA:3.30.565.10 260 424 1.8E-41 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 318 425 5.9E-22 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 SMART SM00387 316 428 3.9E-31 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 367 2.8E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 425 2.8E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 406 2.8E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 381 2.8E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS15310 f13c134672ab44f12b397f094edcac36 442 PANTHER PTHR24423:SF554 5 434 2.1E-132 T 16-09-2016 BER92_RS13570 3f034545d61f985c9ebfdf2c5d3458a8 90 PANTHER PTHR33884:SF1 2 90 8.9E-40 T 16-09-2016 BER92_RS13570 3f034545d61f985c9ebfdf2c5d3458a8 90 Pfam PF04226 Transglycosylase associated protein 41 86 7.9E-10 T 16-09-2016 IPR007341 Transglycosylase-associated protein GO:0016021 BER92_RS13570 3f034545d61f985c9ebfdf2c5d3458a8 90 Gene3D G3DSA:1.10.3470.10 13 83 1.2E-4 T 16-09-2016 IPR029022 ABC transporter, BtuC-like BER92_RS13570 3f034545d61f985c9ebfdf2c5d3458a8 90 PANTHER PTHR33884 2 90 8.9E-40 T 16-09-2016 BER92_RS02995 6c069a2043fbd947f548dae7ade1bc9b 276 Pfam PF00756 Putative esterase 21 268 4.6E-67 T 16-09-2016 IPR000801 Putative esterase BER92_RS02995 6c069a2043fbd947f548dae7ade1bc9b 276 PANTHER PTHR10061 1 276 5.3E-174 T 16-09-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 BER92_RS02995 6c069a2043fbd947f548dae7ade1bc9b 276 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 4 274 1.3E-126 T 16-09-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 BER92_RS02995 6c069a2043fbd947f548dae7ade1bc9b 276 SUPERFAMILY SSF53474 1 274 6.6E-88 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02995 6c069a2043fbd947f548dae7ade1bc9b 276 Gene3D G3DSA:3.40.50.1820 2 275 1.2E-80 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18055 6b5036fc62fcd5fdc91bc6ffd62a472a 223 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 3.6E-89 T 16-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BER92_RS18055 6b5036fc62fcd5fdc91bc6ffd62a472a 223 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 16-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BER92_RS18055 6b5036fc62fcd5fdc91bc6ffd62a472a 223 Gene3D G3DSA:3.20.20.70 2 220 1.3E-96 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS18055 6b5036fc62fcd5fdc91bc6ffd62a472a 223 PANTHER PTHR11749 2 223 3.8E-126 T 16-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BER92_RS18055 6b5036fc62fcd5fdc91bc6ffd62a472a 223 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 16-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BER92_RS18055 6b5036fc62fcd5fdc91bc6ffd62a472a 223 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 216 2.9E-95 T 16-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BER92_RS18055 6b5036fc62fcd5fdc91bc6ffd62a472a 223 PIRSF PIRSF001461 1 223 5.9E-102 T 16-09-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BER92_RS18055 6b5036fc62fcd5fdc91bc6ffd62a472a 223 SUPERFAMILY SSF51366 4 217 1.88E-73 T 16-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 BER92_RS10675 32671d69a790a23e533c8ad190e974d1 510 PANTHER PTHR11699:SF144 5 509 5.1E-297 T 16-09-2016 BER92_RS10675 32671d69a790a23e533c8ad190e974d1 510 SUPERFAMILY SSF53720 21 498 2.88E-132 T 16-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 BER92_RS10675 32671d69a790a23e533c8ad190e974d1 510 PANTHER PTHR11699 5 509 5.1E-297 T 16-09-2016 BER92_RS10675 32671d69a790a23e533c8ad190e974d1 510 Pfam PF00171 Aldehyde dehydrogenase family 32 491 3.2E-129 T 16-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 BER92_RS10675 32671d69a790a23e533c8ad190e974d1 510 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 263 270 - T 16-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 BER92_RS10675 32671d69a790a23e533c8ad190e974d1 510 Gene3D G3DSA:3.40.605.10 30 278 1.7E-69 T 16-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 BER92_RS10675 32671d69a790a23e533c8ad190e974d1 510 Gene3D G3DSA:3.40.309.10 279 457 5.0E-55 T 16-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 7 262 8.8E-142 T 16-09-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 PANTHER PTHR33866 113 264 5.2E-164 T 16-09-2016 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 Gene3D G3DSA:3.60.90.10 39 187 1.8E-47 T 16-09-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 PANTHER PTHR33866:SF1 113 264 5.2E-164 T 16-09-2016 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 154.314 T 16-09-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 PANTHER PTHR33866 19 88 5.2E-164 T 16-09-2016 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 SUPERFAMILY SSF56276 47 175 1.77E-24 T 16-09-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 Pfam PF02675 S-adenosylmethionine decarboxylase 42 170 6.9E-31 T 16-09-2016 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 PIRSF PIRSF001356 2 264 3.7E-146 T 16-09-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 BER92_RS17955 c602e986470cbb312993a9e0d386e4ee 264 PANTHER PTHR33866:SF1 19 88 5.2E-164 T 16-09-2016 BER92_RS16590 07929f39d94f473726592d73c0a40d84 220 Pfam PF12146 Serine aminopeptidase, S33 50 147 7.0E-7 T 16-09-2016 IPR022742 Serine aminopeptidase, S33 BER92_RS16590 07929f39d94f473726592d73c0a40d84 220 PANTHER PTHR12277 15 209 3.8E-45 T 16-09-2016 BER92_RS16590 07929f39d94f473726592d73c0a40d84 220 PANTHER PTHR12277:SF79 15 209 3.8E-45 T 16-09-2016 BER92_RS16590 07929f39d94f473726592d73c0a40d84 220 Gene3D G3DSA:3.40.50.1820 14 216 3.6E-45 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS16590 07929f39d94f473726592d73c0a40d84 220 SUPERFAMILY SSF53474 6 216 2.61E-46 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS14015 c240057c2a7b4917b3d354cc603d144b 325 SUPERFAMILY SSF53901 7 325 1.29E-74 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS14015 c240057c2a7b4917b3d354cc603d144b 325 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 110 187 4.8E-35 T 16-09-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 BER92_RS14015 c240057c2a7b4917b3d354cc603d144b 325 Gene3D G3DSA:3.40.47.10 6 164 5.5E-67 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS14015 c240057c2a7b4917b3d354cc603d144b 325 Gene3D G3DSA:3.40.47.10 165 324 1.4E-55 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS14015 c240057c2a7b4917b3d354cc603d144b 325 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 6 324 1.5E-134 T 16-09-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 BER92_RS14015 c240057c2a7b4917b3d354cc603d144b 325 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 5 325 72.285 T 16-09-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 BER92_RS14015 c240057c2a7b4917b3d354cc603d144b 325 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 236 325 7.7E-38 T 16-09-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 BER92_RS14015 c240057c2a7b4917b3d354cc603d144b 325 PANTHER PTHR18919 30 325 1.0E-133 T 16-09-2016 BER92_RS14015 c240057c2a7b4917b3d354cc603d144b 325 PANTHER PTHR18919:SF109 30 325 1.0E-133 T 16-09-2016 BER92_RS18395 f91f8b5b6ea77336e57f49348fc9c71e 113 PIRSF PIRSF028440 2 113 3.1E-47 T 16-09-2016 IPR014546 Uncharacterised conserved protein, lipid A biosynthesis BER92_RS18395 f91f8b5b6ea77336e57f49348fc9c71e 113 SMART SM01259 26 99 1.8E-21 T 16-09-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 BER92_RS18395 f91f8b5b6ea77336e57f49348fc9c71e 113 ProDom PD339292 LIPID A SYNTHASE LIPID-A-DISACCHARIDE TRANSFERASE GLYCOSYLTRANSFERASE BIOSYNTHESIS N-TERMINAL BIOSYNTHESIS SYNTHESIS 21 104 7.0E-42 T 16-09-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 BER92_RS18395 f91f8b5b6ea77336e57f49348fc9c71e 113 Pfam PF07578 Lipid A Biosynthesis N-terminal domain 26 97 8.1E-21 T 16-09-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 PANTHER PTHR32552:SF8 341 772 2.7E-149 T 16-09-2016 IPR030148 Catecholate siderophore receptor Fiu GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 PANTHER PTHR32552:SF8 11 323 2.7E-149 T 16-09-2016 IPR030148 Catecholate siderophore receptor Fiu GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 60 772 3.3E-72 T 16-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 Gene3D G3DSA:2.40.170.20 172 772 1.7E-120 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 157 8.4E-17 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 Pfam PF00593 TonB dependent receptor 505 770 6.5E-30 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 PANTHER PTHR32552 341 772 2.7E-149 T 16-09-2016 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 PANTHER PTHR32552 11 323 2.7E-149 T 16-09-2016 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 SUPERFAMILY SSF56935 31 772 1.53E-117 T 16-09-2016 BER92_RS13525 822bede6f147a9f0575c6ec20a5162af 772 Gene3D G3DSA:2.170.130.10 53 164 2.5E-29 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS18755 b1c72ee78412d43451d6d1b01360a824 282 PANTHER PTHR38461 2 282 3.4E-169 T 16-09-2016 BER92_RS18755 b1c72ee78412d43451d6d1b01360a824 282 Pfam PF04962 KduI/IolB family 78 271 4.4E-35 T 16-09-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 BER92_RS18755 b1c72ee78412d43451d6d1b01360a824 282 PIRSF PIRSF006625 5 282 1.2E-126 T 16-09-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 BER92_RS18755 b1c72ee78412d43451d6d1b01360a824 282 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 5 282 51.678 T 16-09-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 BER92_RS18755 b1c72ee78412d43451d6d1b01360a824 282 Gene3D G3DSA:2.60.120.520 24 136 7.2E-42 T 16-09-2016 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 BER92_RS18755 b1c72ee78412d43451d6d1b01360a824 282 Gene3D G3DSA:2.60.120.500 137 282 1.3E-67 T 16-09-2016 IPR027447 5-keto-4-deoxyuronate isomerase, C-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 BER92_RS18755 b1c72ee78412d43451d6d1b01360a824 282 SUPERFAMILY SSF51182 6 266 7.19E-95 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 PANTHER PTHR30295:SF9 1 161 2.5E-104 T 16-09-2016 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 PANTHER PTHR30295 1 161 2.5E-104 T 16-09-2016 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 PIRSF PIRSF002560 1 157 2.4E-58 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 SUPERFAMILY SSF47240 1 156 2.52E-43 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 Pfam PF00210 Ferritin-like domain 9 144 4.6E-35 T 16-09-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 PRINTS PR00601 Bacterioferritin signature 3 22 4.5E-37 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 PRINTS PR00601 Bacterioferritin signature 106 126 4.5E-37 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 PRINTS PR00601 Bacterioferritin signature 85 105 4.5E-37 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 PRINTS PR00601 Bacterioferritin signature 44 64 4.5E-37 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 PRINTS PR00601 Bacterioferritin signature 23 43 4.5E-37 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 PRINTS PR00601 Bacterioferritin signature 128 149 4.5E-37 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 Gene3D G3DSA:1.20.1260.10 1 156 7.0E-52 T 16-09-2016 IPR012347 Ferritin-related BER92_RS06525 5c4d572be29c7aaf879d4ea011f7d991 161 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 3.5E-40 T 16-09-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 SUPERFAMILY SSF55785 209 337 5.23E-7 T 16-09-2016 IPR000014 PAS domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 Gene3D G3DSA:3.30.565.10 591 684 4.3E-12 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 PANTHER PTHR24423 205 692 8.1E-120 T 16-09-2016 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 Gene3D G3DSA:3.30.450.20 337 458 5.0E-16 T 16-09-2016 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 Pfam PF07730 Histidine kinase 490 555 1.8E-13 T 16-09-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 SUPERFAMILY SSF55874 560 682 4.19E-20 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 SUPERFAMILY SSF55785 90 204 2.84E-12 T 16-09-2016 IPR000014 PAS domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 Pfam PF08448 PAS fold 116 211 4.5E-9 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 SUPERFAMILY SSF55785 336 459 6.73E-17 T 16-09-2016 IPR000014 PAS domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 Pfam PF13426 PAS domain 361 461 9.9E-7 T 16-09-2016 IPR000014 PAS domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 SMART SM00387 593 685 3.5E-10 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 SMART SM00091 97 164 1.5E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 SMART SM00091 351 416 1.7E-6 T 16-09-2016 IPR000014 PAS domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 Gene3D G3DSA:3.30.450.20 90 209 9.1E-14 T 16-09-2016 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 PANTHER PTHR24423:SF516 205 692 8.1E-120 T 16-09-2016 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 Gene3D G3DSA:3.30.450.20 217 336 4.1E-9 T 16-09-2016 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 597 683 3.7E-8 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 630 644 1.5E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 669 682 1.5E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 PRINTS PR00344 Bacterial sensor protein C-terminal signature 645 663 1.5E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10210 b1272e35f54ecae22767b00697da3368 696 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 347 469 2.2E-15 T 16-09-2016 IPR000014 PAS domain BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 Gene3D G3DSA:3.30.70.20 94 135 8.6E-13 T 16-09-2016 BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 PANTHER PTHR11938 8 135 2.6E-44 T 16-09-2016 BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 Gene3D G3DSA:3.30.70.20 19 93 5.1E-9 T 16-09-2016 BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 Pfam PF04060 Putative Fe-S cluster 16 48 1.1E-13 T 16-09-2016 IPR007202 4Fe-4S domain GO:0051536 BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 118 129 - T 16-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 PANTHER PTHR11938:SF64 8 135 2.6E-44 T 16-09-2016 BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 Pfam PF14697 4Fe-4S dicluster domain 81 134 2.8E-15 T 16-09-2016 BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 4 137 6.2E-63 T 16-09-2016 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 SUPERFAMILY SSF54862 9 135 3.31E-26 T 16-09-2016 BER92_RS12200 7b12606cfb7d4a10c8af806ad520143f 139 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 88 99 - T 16-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 PANTHER PTHR33121 471 770 2.1E-66 T 16-09-2016 BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 349 500 1.2E-30 T 16-09-2016 IPR000160 GGDEF domain BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 PANTHER PTHR33121:SF13 471 770 2.1E-66 T 16-09-2016 BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 Gene3D G3DSA:3.30.70.270 352 513 1.3E-43 T 16-09-2016 BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 Pfam PF14827 Double sensory domain of two-component sensor kinase 36 244 1.3E-12 T 16-09-2016 IPR029150 Double Cache domain 3 BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 SUPERFAMILY SSF141868 527 774 1.26E-84 T 16-09-2016 IPR001633 EAL domain BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 SMART SM00267 340 511 1.3E-44 T 16-09-2016 IPR000160 GGDEF domain BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 Pfam PF00563 EAL domain 528 761 3.0E-70 T 16-09-2016 IPR001633 EAL domain BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 SUPERFAMILY SSF158472 293 341 6.54E-8 T 16-09-2016 BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 Pfam PF00990 Diguanylate cyclase, GGDEF domain 351 500 2.3E-38 T 16-09-2016 IPR000160 GGDEF domain BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 Pfam PF00672 HAMP domain 274 340 1.3E-13 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 SUPERFAMILY SSF55073 356 500 2.2E-37 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 SMART SM00052 521 766 3.7E-99 T 16-09-2016 IPR001633 EAL domain BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 SMART SM00304 293 345 4.0E-11 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS07205 0edca987296aa05d59876d20ef299bc2 787 Gene3D G3DSA:3.20.20.450 524 773 1.2E-90 T 16-09-2016 IPR001633 EAL domain BER92_RS12390 961c55c2635d0e3970f937e8eb1c8364 189 PANTHER PTHR11241 1 188 1.5E-76 T 16-09-2016 BER92_RS12390 961c55c2635d0e3970f937e8eb1c8364 189 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 188 5.5E-48 T 16-09-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 BER92_RS12390 961c55c2635d0e3970f937e8eb1c8364 189 PANTHER PTHR11241:SF1 1 188 1.5E-76 T 16-09-2016 BER92_RS12390 961c55c2635d0e3970f937e8eb1c8364 189 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 189 28.323 T 16-09-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 BER92_RS12390 961c55c2635d0e3970f937e8eb1c8364 189 SUPERFAMILY SSF51283 3 188 1.83E-53 T 16-09-2016 IPR029054 dUTPase-like BER92_RS12390 961c55c2635d0e3970f937e8eb1c8364 189 Gene3D G3DSA:2.70.40.10 3 188 1.2E-68 T 16-09-2016 IPR029054 dUTPase-like BER92_RS12390 961c55c2635d0e3970f937e8eb1c8364 189 Pfam PF00692 dUTPase 81 184 5.3E-7 T 16-09-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 BER92_RS11200 67e6f51ce07a90b2b1d255d09acc7db6 124 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 20 121 4.1E-23 T 16-09-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein BER92_RS11200 67e6f51ce07a90b2b1d255d09acc7db6 124 SUPERFAMILY SSF64076 1 123 1.44E-30 T 16-09-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein BER92_RS11200 67e6f51ce07a90b2b1d255d09acc7db6 124 PANTHER PTHR21192:SF3 3 124 1.8E-53 T 16-09-2016 BER92_RS11200 67e6f51ce07a90b2b1d255d09acc7db6 124 Gene3D G3DSA:3.40.1230.10 1 123 2.8E-34 T 16-09-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein BER92_RS11200 67e6f51ce07a90b2b1d255d09acc7db6 124 PANTHER PTHR21192 3 124 1.8E-53 T 16-09-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 SUPERFAMILY SSF54211 18 176 3.34E-30 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 Pfam PF08544 GHMP kinases C terminal 224 297 4.0E-10 T 16-09-2016 IPR013750 GHMP kinase, C-terminal domain BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 PANTHER PTHR20861 1 319 1.0E-93 T 16-09-2016 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 Pfam PF00288 GHMP kinases N terminal domain 96 162 1.8E-11 T 16-09-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 PRINTS PR00958 Homoserine kinase signature 24 39 8.5E-24 T 16-09-2016 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 PRINTS PR00958 Homoserine kinase signature 263 278 8.5E-24 T 16-09-2016 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 PRINTS PR00958 Homoserine kinase signature 149 162 8.5E-24 T 16-09-2016 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 PRINTS PR00958 Homoserine kinase signature 184 201 8.5E-24 T 16-09-2016 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 PRINTS PR00958 Homoserine kinase signature 109 124 8.5E-24 T 16-09-2016 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 PIRSF PIRSF000676 13 318 4.3E-79 T 16-09-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 PANTHER PTHR20861:SF1 1 319 1.0E-93 T 16-09-2016 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 SUPERFAMILY SSF55060 182 296 1.34E-22 T 16-09-2016 IPR013750 GHMP kinase, C-terminal domain BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 TIGRFAM TIGR00191 thrB: homoserine kinase 21 299 3.3E-52 T 16-09-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 Gene3D G3DSA:3.30.230.10 17 169 1.3E-40 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 Gene3D G3DSA:3.30.70.890 176 305 3.1E-28 T 16-09-2016 IPR013750 GHMP kinase, C-terminal domain BER92_RS10605 19ae11cece3fc58d0ea175b342b49d78 319 Hamap MF_00384 Homoserine kinase [thrB]. 17 317 29.209 T 16-09-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 BER92_RS18260 7dc4a2a79bf05cb9c3ad4b250bad9fff 298 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 6 291 4.3E-88 T 16-09-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 BER92_RS18260 7dc4a2a79bf05cb9c3ad4b250bad9fff 298 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 62 84 - T 16-09-2016 IPR030470 UbiA prenyltransferase conserved site BER92_RS18260 7dc4a2a79bf05cb9c3ad4b250bad9fff 298 Pfam PF01040 UbiA prenyltransferase family 21 266 1.4E-55 T 16-09-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 BER92_RS18260 7dc4a2a79bf05cb9c3ad4b250bad9fff 298 PANTHER PTHR11048:SF3 6 296 7.5E-77 T 16-09-2016 BER92_RS18260 7dc4a2a79bf05cb9c3ad4b250bad9fff 298 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 4 292 19.304 T 16-09-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 BER92_RS18260 7dc4a2a79bf05cb9c3ad4b250bad9fff 298 PANTHER PTHR11048 6 296 7.5E-77 T 16-09-2016 BER92_RS09140 dbc3a6091cdf0f074fae1d4a3d5a2e05 139 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 135 11.304 T 16-09-2016 IPR022907 VapC family GO:0004540 BER92_RS09140 dbc3a6091cdf0f074fae1d4a3d5a2e05 139 Gene3D G3DSA:3.40.50.1010 1 136 1.7E-20 T 16-09-2016 IPR029060 PIN domain-like BER92_RS09140 dbc3a6091cdf0f074fae1d4a3d5a2e05 139 PANTHER PTHR33653 1 139 2.7E-30 T 16-09-2016 BER92_RS09140 dbc3a6091cdf0f074fae1d4a3d5a2e05 139 SUPERFAMILY SSF88723 1 136 2.78E-31 T 16-09-2016 IPR029060 PIN domain-like BER92_RS09140 dbc3a6091cdf0f074fae1d4a3d5a2e05 139 PANTHER PTHR33653:SF1 1 139 2.7E-30 T 16-09-2016 BER92_RS09140 dbc3a6091cdf0f074fae1d4a3d5a2e05 139 Pfam PF01850 PIN domain 2 125 5.3E-18 T 16-09-2016 IPR002716 PIN domain BER92_RS10190 840890abb4eb8f5d5ec3a345bbe03350 396 SUPERFAMILY SSF58104 57 342 2.22E-44 T 16-09-2016 BER92_RS10190 840890abb4eb8f5d5ec3a345bbe03350 396 Gene3D G3DSA:1.10.287.950 107 309 5.6E-42 T 16-09-2016 BER92_RS10190 840890abb4eb8f5d5ec3a345bbe03350 396 SMART SM00283 78 350 6.9E-13 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS10190 840890abb4eb8f5d5ec3a345bbe03350 396 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 143 340 1.1E-30 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS10190 840890abb4eb8f5d5ec3a345bbe03350 396 PANTHER PTHR32089 81 348 3.9E-32 T 16-09-2016 BER92_RS03775 1c2dc2e49c034490e9fed636562fe4e8 425 Gene3D G3DSA:3.40.50.2000 22 211 2.6E-62 T 16-09-2016 BER92_RS03775 1c2dc2e49c034490e9fed636562fe4e8 425 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 22 370 35.92 T 16-09-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS03775 1c2dc2e49c034490e9fed636562fe4e8 425 PANTHER PTHR21015 22 372 6.7E-119 T 16-09-2016 BER92_RS03775 1c2dc2e49c034490e9fed636562fe4e8 425 Gene3D G3DSA:3.40.50.2000 268 343 1.9E-4 T 16-09-2016 BER92_RS03775 1c2dc2e49c034490e9fed636562fe4e8 425 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 22 159 2.9E-40 T 16-09-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS03775 1c2dc2e49c034490e9fed636562fe4e8 425 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 199 361 1.0E-39 T 16-09-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS03775 1c2dc2e49c034490e9fed636562fe4e8 425 SUPERFAMILY SSF53756 21 369 9.43E-115 T 16-09-2016 BER92_RS03775 1c2dc2e49c034490e9fed636562fe4e8 425 PANTHER PTHR21015:SF22 22 372 6.7E-119 T 16-09-2016 BER92_RS03775 1c2dc2e49c034490e9fed636562fe4e8 425 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 20 366 2.9E-108 T 16-09-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 Gene3D G3DSA:2.40.50.140 130 187 4.5E-22 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 PANTHER PTHR30053 2 188 2.4E-110 T 16-09-2016 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 2 60 5.8E-13 T 16-09-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 Gene3D G3DSA:2.30.30.30 2 63 4.1E-10 T 16-09-2016 IPR014722 Ribosomal protein L2 domain 2 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 PANTHER PTHR30053:SF5 2 188 2.4E-110 T 16-09-2016 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 16-09-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 2.9E-20 T 16-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 Gene3D G3DSA:2.40.50.140 68 129 1.7E-14 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 PIRSF PIRSF005901 1 188 1.8E-60 T 16-09-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 SUPERFAMILY SSF50249 130 187 1.09E-15 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 SUPERFAMILY SSF50249 69 128 1.93E-11 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 2 187 6.5E-85 T 16-09-2016 IPR011897 Translation elongation factor P-like, YeiP BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 SMART SM00841 131 186 9.6E-24 T 16-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 123 6.6E-13 T 16-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 1 187 40.862 T 16-09-2016 IPR011897 Translation elongation factor P-like, YeiP BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 SUPERFAMILY SSF50104 2 63 1.87E-9 T 16-09-2016 IPR008991 Translation protein SH3-like domain BER92_RS09310 6f5e0525659c155880fe79123a3ecd91 188 SMART SM01185 68 123 8.2E-14 T 16-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 BER92_RS08255 659ed2c613c3e86ca0b7adb0e7881b75 363 Gene3D G3DSA:3.40.190.10 204 361 7.5E-36 T 16-09-2016 BER92_RS08255 659ed2c613c3e86ca0b7adb0e7881b75 363 Gene3D G3DSA:3.40.190.10 50 193 1.2E-52 T 16-09-2016 BER92_RS08255 659ed2c613c3e86ca0b7adb0e7881b75 363 SUPERFAMILY SSF53850 52 359 7.52E-97 T 16-09-2016 BER92_RS08255 659ed2c613c3e86ca0b7adb0e7881b75 363 PIRSF PIRSF002756 4 361 1.3E-104 T 16-09-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BER92_RS08255 659ed2c613c3e86ca0b7adb0e7881b75 363 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 52 359 2.6E-123 T 16-09-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BER92_RS08255 659ed2c613c3e86ca0b7adb0e7881b75 363 PANTHER PTHR30570:SF0 42 358 4.1E-134 T 16-09-2016 BER92_RS08255 659ed2c613c3e86ca0b7adb0e7881b75 363 Pfam PF12849 PBP superfamily domain 42 332 1.5E-59 T 16-09-2016 IPR024370 PBP domain BER92_RS08255 659ed2c613c3e86ca0b7adb0e7881b75 363 PANTHER PTHR30570 42 358 4.1E-134 T 16-09-2016 BER92_RS05680 d43e84b02bb9eb1ed4c5d95bbda8a689 182 Gene3D G3DSA:3.90.79.10 19 180 3.5E-36 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS05680 d43e84b02bb9eb1ed4c5d95bbda8a689 182 PANTHER PTHR11839 1 182 7.5E-93 T 16-09-2016 BER92_RS05680 d43e84b02bb9eb1ed4c5d95bbda8a689 182 PANTHER PTHR11839:SF12 1 182 7.5E-93 T 16-09-2016 BER92_RS05680 d43e84b02bb9eb1ed4c5d95bbda8a689 182 SUPERFAMILY SSF55811 7 178 5.96E-36 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS05680 d43e84b02bb9eb1ed4c5d95bbda8a689 182 Pfam PF00293 NUDIX domain 45 158 2.8E-15 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS05680 d43e84b02bb9eb1ed4c5d95bbda8a689 182 ProSitePatterns PS00893 Nudix box signature. 78 99 - T 16-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BER92_RS02890 b90568292186ea3759fdd80d8377ef8e 146 Gene3D G3DSA:3.40.50.2300 6 133 2.0E-30 T 16-09-2016 BER92_RS02890 b90568292186ea3759fdd80d8377ef8e 146 PANTHER PTHR26402 5 132 8.7E-28 T 16-09-2016 BER92_RS02890 b90568292186ea3759fdd80d8377ef8e 146 SUPERFAMILY SSF52172 6 141 1.17E-28 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS02890 b90568292186ea3759fdd80d8377ef8e 146 SMART SM00448 5 129 1.3E-21 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS02890 b90568292186ea3759fdd80d8377ef8e 146 Pfam PF00072 Response regulator receiver domain 7 129 1.2E-17 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 Pfam PF00356 Bacterial regulatory proteins, lacI family 21 66 5.7E-19 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 Gene3D G3DSA:3.40.50.2300 194 325 3.0E-47 T 16-09-2016 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 ProSitePatterns PS00356 LacI-type HTH domain signature. 22 40 - T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 SMART SM00354 19 89 5.1E-25 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 SUPERFAMILY SSF53822 80 350 1.73E-60 T 16-09-2016 IPR028082 Periplasmic binding protein-like I BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 Gene3D G3DSA:1.10.260.40 20 71 3.2E-23 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 21 31 1.9E-5 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 31 41 1.9E-5 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 SUPERFAMILY SSF47413 19 77 1.45E-16 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 PANTHER PTHR30146:SF52 19 352 1.0E-291 T 16-09-2016 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 Pfam PF13377 Periplasmic binding protein-like domain 188 347 6.1E-35 T 16-09-2016 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 PANTHER PTHR30146 19 352 1.0E-291 T 16-09-2016 BER92_RS18765 73e3c5696dfcc38e8c8a3c5661e25e1e 352 Gene3D G3DSA:3.40.50.2300 72 193 1.6E-18 T 16-09-2016 BER92_RS08895 cb9a81f79e083342ba9f4039475ce48c 266 PANTHER PTHR23088 1 260 2.4E-152 T 16-09-2016 BER92_RS08895 cb9a81f79e083342ba9f4039475ce48c 266 Pfam PF00795 Carbon-nitrogen hydrolase 8 246 1.1E-29 T 16-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 BER92_RS08895 cb9a81f79e083342ba9f4039475ce48c 266 PANTHER PTHR23088:SF28 1 260 2.4E-152 T 16-09-2016 BER92_RS08895 cb9a81f79e083342ba9f4039475ce48c 266 SUPERFAMILY SSF56317 2 255 3.27E-57 T 16-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 BER92_RS08895 cb9a81f79e083342ba9f4039475ce48c 266 Gene3D G3DSA:3.60.110.10 1 259 1.3E-57 T 16-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 BER92_RS13895 513d3a5a0f70722c2635b77f6a560eaf 130 Pfam PF13751 Transposase DDE domain 67 114 1.1E-5 T 16-09-2016 IPR025668 Transposase DDE domain BER92_RS13895 513d3a5a0f70722c2635b77f6a560eaf 130 PANTHER PTHR33803 1 130 3.9E-93 T 16-09-2016 BER92_RS13895 513d3a5a0f70722c2635b77f6a560eaf 130 PANTHER PTHR33803:SF1 1 130 3.9E-93 T 16-09-2016 BER92_RS10970 36414cbed89557bbda4850e49841aef0 116 Gene3D G3DSA:3.30.70.970 28 110 5.7E-4 T 16-09-2016 IPR009671 Regulator of ribonuclease activity B domain BER92_RS10970 36414cbed89557bbda4850e49841aef0 116 Pfam PF06877 Regulator of ribonuclease activity B 9 113 1.0E-18 T 16-09-2016 IPR009671 Regulator of ribonuclease activity B domain BER92_RS10970 36414cbed89557bbda4850e49841aef0 116 SUPERFAMILY SSF89946 22 110 5.49E-5 T 16-09-2016 IPR009671 Regulator of ribonuclease activity B domain BER92_RS10255 b0f3447a7cc01fa8d21c9fbaf2cf6eb4 221 Pfam PF13860 FlgD Ig-like domain 104 177 1.8E-18 T 16-09-2016 IPR025965 FlgD Ig-like domain BER92_RS10255 b0f3447a7cc01fa8d21c9fbaf2cf6eb4 221 PANTHER PTHR30435:SF15 6 207 1.3E-60 T 16-09-2016 BER92_RS10255 b0f3447a7cc01fa8d21c9fbaf2cf6eb4 221 Pfam PF13861 FlgD Tudor-like domain 84 217 1.5E-14 T 16-09-2016 IPR025963 FlgD Tudor-like domain BER92_RS10255 b0f3447a7cc01fa8d21c9fbaf2cf6eb4 221 PANTHER PTHR30435 6 207 1.3E-60 T 16-09-2016 BER92_RS10255 b0f3447a7cc01fa8d21c9fbaf2cf6eb4 221 Pfam PF03963 Flagellar hook capping protein - N-terminal region 15 76 1.2E-22 T 16-09-2016 IPR005648 Flagellar hook capping protein BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 PRINTS PR00975 Ribosomal protein S19 family signature 31 50 1.5E-20 T 16-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 PRINTS PR00975 Ribosomal protein S19 family signature 51 63 1.5E-20 T 16-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 PRINTS PR00975 Ribosomal protein S19 family signature 63 78 1.5E-20 T 16-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 PANTHER PTHR11880 1 89 2.1E-46 T 16-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 Gene3D G3DSA:3.30.860.10 1 87 1.7E-37 T 16-09-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 Pfam PF00203 Ribosomal protein S19 3 81 2.6E-34 T 16-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 87 23.93 T 16-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 88 1.5E-40 T 16-09-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 PIRSF PIRSF002144 1 89 5.5E-30 T 16-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 BER92_RS05185 29ba8d1b04e2804bc4170c35df212331 89 SUPERFAMILY SSF54570 3 82 4.84E-32 T 16-09-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 BER92_RS13045 03b77c9a953a331c9d796209d673fa0c 277 PANTHER PTHR30348 1 229 7.1E-139 T 16-09-2016 BER92_RS13045 03b77c9a953a331c9d796209d673fa0c 277 PANTHER PTHR30348:SF7 248 275 7.1E-139 T 16-09-2016 BER92_RS13045 03b77c9a953a331c9d796209d673fa0c 277 SUPERFAMILY SSF117396 15 274 2.49E-61 T 16-09-2016 IPR002763 Protein of unknown function DUF72 BER92_RS13045 03b77c9a953a331c9d796209d673fa0c 277 PANTHER PTHR30348 248 275 7.1E-139 T 16-09-2016 BER92_RS13045 03b77c9a953a331c9d796209d673fa0c 277 Pfam PF01904 Protein of unknown function DUF72 33 271 2.5E-51 T 16-09-2016 IPR002763 Protein of unknown function DUF72 BER92_RS13045 03b77c9a953a331c9d796209d673fa0c 277 Gene3D G3DSA:3.20.20.410 9 274 2.3E-68 T 16-09-2016 IPR002763 Protein of unknown function DUF72 BER92_RS13045 03b77c9a953a331c9d796209d673fa0c 277 PANTHER PTHR30348:SF7 1 229 7.1E-139 T 16-09-2016 BER92_RS05925 7d691f085cdc9555c59b118e76ba35fb 86 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.453 T 16-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05925 7d691f085cdc9555c59b118e76ba35fb 86 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 16-09-2016 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05925 7d691f085cdc9555c59b118e76ba35fb 86 PANTHER PTHR12919 1 78 1.4E-37 T 16-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05925 7d691f085cdc9555c59b118e76ba35fb 86 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 1.7E-30 T 16-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05925 7d691f085cdc9555c59b118e76ba35fb 86 Gene3D G3DSA:3.30.1320.10 1 78 6.9E-32 T 16-09-2016 IPR023803 Ribosomal protein S16 domain BER92_RS05925 7d691f085cdc9555c59b118e76ba35fb 86 SUPERFAMILY SSF54565 1 78 4.19E-28 T 16-09-2016 IPR023803 Ribosomal protein S16 domain BER92_RS05925 7d691f085cdc9555c59b118e76ba35fb 86 Pfam PF00886 Ribosomal protein S16 8 68 1.0E-23 T 16-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 SUPERFAMILY SSF55048 132 199 7.72E-16 T 16-09-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 PIRSF PIRSF000446 4 312 7.0E-103 T 16-09-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 PANTHER PTHR10982 4 304 8.9E-139 T 16-09-2016 BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 Pfam PF00698 Acyl transferase domain 8 270 1.5E-37 T 16-09-2016 IPR014043 Acyl transferase BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 6 293 2.4E-99 T 16-09-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 Gene3D G3DSA:3.30.70.250 127 198 4.7E-25 T 16-09-2016 BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 SUPERFAMILY SSF52151 6 124 4.45E-76 T 16-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 SUPERFAMILY SSF52151 192 311 4.45E-76 T 16-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 9 312 4.8E-40 T 16-09-2016 IPR020801 Polyketide synthase, acyl transferase domain BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 Gene3D G3DSA:3.40.366.10 199 303 2.7E-69 T 16-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 BER92_RS14010 3ec9cf261cc1263992f78029d2111615 314 Gene3D G3DSA:3.40.366.10 4 124 2.7E-69 T 16-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 BER92_RS10420 8feda204b42ffd1b45c54caf2a1c678c 89 PIRSF PIRSF004669 1 89 7.9E-23 T 16-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BER92_RS10420 8feda204b42ffd1b45c54caf2a1c678c 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 8.0E-15 T 16-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BER92_RS10420 8feda204b42ffd1b45c54caf2a1c678c 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 8.0E-15 T 16-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BER92_RS10420 8feda204b42ffd1b45c54caf2a1c678c 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 8.0E-15 T 16-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BER92_RS10420 8feda204b42ffd1b45c54caf2a1c678c 89 PANTHER PTHR34040:SF2 1 89 2.0E-33 T 16-09-2016 BER92_RS10420 8feda204b42ffd1b45c54caf2a1c678c 89 PANTHER PTHR34040 1 89 2.0E-33 T 16-09-2016 BER92_RS10420 8feda204b42ffd1b45c54caf2a1c678c 89 Pfam PF01313 Bacterial export proteins, family 3 10 77 6.3E-20 T 16-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 PANTHER PTHR30332 5 759 7.2E-182 T 16-09-2016 BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 PANTHER PTHR30332:SF0 5 759 7.2E-182 T 16-09-2016 BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 Pfam PF00263 Bacterial type II and III secretion system protein 565 740 3.4E-43 T 16-09-2016 IPR004846 Type II/III secretion system GO:0009306 BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 Pfam PF03958 Bacterial type II/III secretion system short domain 332 482 1.3E-9 T 16-09-2016 IPR005644 NolW-like BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 Pfam PF03958 Bacterial type II/III secretion system short domain 257 324 6.4E-8 T 16-09-2016 IPR005644 NolW-like BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 96 749 3.4E-181 T 16-09-2016 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 685 718 - T 16-09-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 PRINTS PR00811 Bacterial general secretion pathway protein D signature 727 741 3.7E-14 T 16-09-2016 IPR001775 GspD/PilQ family BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 PRINTS PR00811 Bacterial general secretion pathway protein D signature 482 492 3.7E-14 T 16-09-2016 IPR001775 GspD/PilQ family BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 PRINTS PR00811 Bacterial general secretion pathway protein D signature 704 722 3.7E-14 T 16-09-2016 IPR001775 GspD/PilQ family BER92_RS04405 6c82b15084374ab4a05fc187ea65c160 768 PRINTS PR00811 Bacterial general secretion pathway protein D signature 561 585 3.7E-14 T 16-09-2016 IPR001775 GspD/PilQ family BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 12 445 4.3E-100 T 16-09-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 SMART SM00228 107 185 0.64 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 SMART SM00228 211 279 5.4E-6 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 SUPERFAMILY SSF50156 221 308 5.65E-14 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 PANTHER PTHR22939 203 447 1.4E-72 T 16-09-2016 BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 Gene3D G3DSA:2.30.42.10 223 293 1.7E-14 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 Pfam PF02163 Peptidase family M50 11 432 1.4E-76 T 16-09-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 PANTHER PTHR22939:SF78 203 447 1.4E-72 T 16-09-2016 BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 Gene3D G3DSA:2.30.42.10 95 180 3.6E-12 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06400 45826af33287fc96ab9ac04af92ba621 448 SUPERFAMILY SSF50156 89 174 1.97E-11 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 PANTHER PTHR32294:SF4 44 1073 0.0 T 16-09-2016 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 PANTHER PTHR32294 44 1073 0.0 T 16-09-2016 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 SMART SM00481 49 116 2.2E-13 T 16-09-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 Pfam PF14579 Helix-hairpin-helix motif 819 915 3.4E-20 T 16-09-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 316 738 3.6E-144 T 16-09-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 Pfam PF01336 OB-fold nucleic acid binding domain 993 1057 3.0E-6 T 16-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 48 1083 13.06 T 16-09-2016 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 Pfam PF02811 PHP domain 50 144 2.9E-14 T 16-09-2016 IPR004013 PHP domain GO:0003824 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 Gene3D G3DSA:3.20.20.140 49 246 9.8E-9 T 16-09-2016 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 SUPERFAMILY SSF89550 48 126 2.75E-10 T 16-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 SUPERFAMILY SSF89550 155 235 2.75E-10 T 16-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 BER92_RS14220 308ad22c40083d6b177cc569018ecf64 1083 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 49 915 1.4E-155 T 16-09-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS11530 c8bb6ca9dab9a88a18ea421c5c6251f8 251 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 25 244 2.5E-103 T 16-09-2016 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0006810|GO:0016020 BER92_RS11530 c8bb6ca9dab9a88a18ea421c5c6251f8 251 SMART SM00382 54 242 1.2E-15 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS11530 c8bb6ca9dab9a88a18ea421c5c6251f8 251 PANTHER PTHR24220:SF111 27 247 1.9E-118 T 16-09-2016 BER92_RS11530 c8bb6ca9dab9a88a18ea421c5c6251f8 251 PANTHER PTHR24220 27 247 1.9E-118 T 16-09-2016 BER92_RS11530 c8bb6ca9dab9a88a18ea421c5c6251f8 251 Pfam PF00005 ABC transporter 47 193 1.5E-29 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS11530 c8bb6ca9dab9a88a18ea421c5c6251f8 251 Gene3D G3DSA:3.40.50.300 24 245 1.4E-62 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11530 c8bb6ca9dab9a88a18ea421c5c6251f8 251 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS11530 c8bb6ca9dab9a88a18ea421c5c6251f8 251 SUPERFAMILY SSF52540 25 246 1.57E-64 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05000 b3ee6cfe882ccb62dcfe51bc990495eb 203 Pfam PF00578 AhpC/TSA family 68 181 1.4E-16 T 16-09-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 BER92_RS05000 b3ee6cfe882ccb62dcfe51bc990495eb 203 SUPERFAMILY SSF52833 64 194 4.09E-32 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS05000 b3ee6cfe882ccb62dcfe51bc990495eb 203 PANTHER PTHR10681:SF125 61 198 4.1E-51 T 16-09-2016 BER92_RS05000 b3ee6cfe882ccb62dcfe51bc990495eb 203 PANTHER PTHR10681 61 198 4.1E-51 T 16-09-2016 BER92_RS05000 b3ee6cfe882ccb62dcfe51bc990495eb 203 Gene3D G3DSA:3.40.30.10 62 194 3.2E-40 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS05000 b3ee6cfe882ccb62dcfe51bc990495eb 203 Gene3D G3DSA:3.40.30.10 6 30 3.2E-40 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS05000 b3ee6cfe882ccb62dcfe51bc990495eb 203 ProSitePatterns PS00194 Thioredoxin family active site. 93 111 - T 16-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 ProSitePatterns PS00211 ABC transporters family signature. 436 450 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 Pfam PF16326 ABC transporter C-terminal domain 561 628 1.6E-20 T 16-09-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 SUPERFAMILY SSF52540 3 94 3.28E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 SUPERFAMILY SSF52540 121 233 3.28E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 SMART SM00382 28 225 9.3E-19 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 SMART SM00382 339 509 1.5E-14 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 Pfam PF12848 ABC transporter 219 293 7.1E-11 T 16-09-2016 IPR032781 ABC-transporter extension domain BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 Gene3D G3DSA:3.40.50.300 312 524 2.6E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 Gene3D G3DSA:3.40.50.300 4 275 1.7E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 PANTHER PTHR19211 4 571 1.9E-207 T 16-09-2016 BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 Pfam PF00005 ABC transporter 20 180 2.6E-26 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 Pfam PF00005 ABC transporter 331 464 2.2E-22 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS12025 8cd2fd45b622db59f1b50a9dec488cb4 630 SUPERFAMILY SSF52540 308 511 5.16E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 Gene3D G3DSA:2.40.50.140 413 533 1.9E-31 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 SUPERFAMILY SSF56091 207 408 1.41E-53 T 16-09-2016 BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 Gene3D G3DSA:3.30.470.30 237 353 1.9E-27 T 16-09-2016 BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 PANTHER PTHR10459:SF10 3 534 2.2E-78 T 16-09-2016 BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 2 532 1.8E-187 T 16-09-2016 IPR026333 ATP-dependent DNA ligase, PP_1105 family BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 Gene3D G3DSA:3.30.1490.70 206 236 1.4E-21 T 16-09-2016 BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 Gene3D G3DSA:3.30.1490.70 365 408 1.4E-21 T 16-09-2016 BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 PANTHER PTHR10459 3 534 2.2E-78 T 16-09-2016 BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 SUPERFAMILY SSF50249 413 532 1.2E-26 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 SUPERFAMILY SSF117018 4 172 4.71E-5 T 16-09-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 Pfam PF04675 DNA ligase N terminus 3 166 1.3E-21 T 16-09-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 Pfam PF04679 ATP dependent DNA ligase C terminal region 429 518 1.0E-8 T 16-09-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 BER92_RS07045 4c69acfa867ac9ea898cbd1c21b907d8 534 Pfam PF01068 ATP dependent DNA ligase domain 212 408 7.4E-34 T 16-09-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 Pfam PF00460 Flagella basal body rod protein 3 33 1.8E-8 T 16-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 16-09-2016 IPR019776 Flagellar basal body rod protein, conserved site BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 SUPERFAMILY SSF117143 79 368 2.75E-73 T 16-09-2016 BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 PANTHER PTHR30435:SF1 1 123 1.5E-104 T 16-09-2016 BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 PANTHER PTHR30435:SF1 285 407 1.5E-104 T 16-09-2016 BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 389 5.9E-106 T 16-09-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 Pfam PF07559 Flagellar basal body protein FlaE 177 288 5.3E-21 T 16-09-2016 IPR011491 Flagellar hook protein FlgE BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 328 406 1.3E-19 T 16-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 PANTHER PTHR30435 1 123 1.5E-104 T 16-09-2016 BER92_RS10260 2fa1406e805beb87d8033a154b660f4f 407 PANTHER PTHR30435 285 407 1.5E-104 T 16-09-2016 BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 94 108 - T 16-09-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 94 369 6.6E-24 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 Gene3D G3DSA:3.90.1380.10 1 80 6.4E-17 T 16-09-2016 IPR029144 Threonine synthase, N-terminal BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 PANTHER PTHR10314:SF1 25 432 1.2E-117 T 16-09-2016 BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 SUPERFAMILY SSF53686 1 431 3.4E-120 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 Pfam PF14821 Threonine synthase N terminus 3 76 4.3E-12 T 16-09-2016 IPR029144 Threonine synthase, N-terminal BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 TIGRFAM TIGR00260 thrC: threonine synthase 73 399 4.8E-70 T 16-09-2016 IPR004450 Threonine synthase-like BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 Gene3D G3DSA:3.40.50.1100 103 193 4.3E-14 T 16-09-2016 BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 PANTHER PTHR10314 25 432 1.2E-117 T 16-09-2016 BER92_RS10585 4f38d84e7e361a292eb8f50e48799663 435 Gene3D G3DSA:3.40.50.1100 194 407 3.0E-63 T 16-09-2016 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 SMART SM00155 214 241 0.021 T 16-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 SMART SM00155 385 412 1.1 T 16-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 PANTHER PTHR21248 17 472 7.8E-86 T 16-09-2016 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 Pfam PF13091 PLD-like domain 130 271 1.1E-19 T 16-09-2016 IPR025202 Phospholipase D-like domain BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 Pfam PF13091 PLD-like domain 315 435 4.6E-21 T 16-09-2016 IPR025202 Phospholipase D-like domain BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 Gene3D G3DSA:3.30.870.10 306 449 3.3E-32 T 16-09-2016 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 11 469 7.5E-99 T 16-09-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 SUPERFAMILY SSF56024 263 459 1.3E-43 T 16-09-2016 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 SUPERFAMILY SSF56024 101 301 9.42E-46 T 16-09-2016 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 PANTHER PTHR21248:SF9 17 472 7.8E-86 T 16-09-2016 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 Gene3D G3DSA:3.30.870.10 109 302 1.0E-38 T 16-09-2016 BER92_RS01220 64b944270c72e783f2d7684ae1bc5e4e 472 Pfam PF13396 Phospholipase_D-nuclease N-terminal 21 57 4.9E-5 T 16-09-2016 IPR027379 Cardiolipin synthase N-terminal BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 TIGRFAM TIGR00586 mutt: mutator mutT protein 7 131 9.9E-33 T 16-09-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 SUPERFAMILY SSF51391 118 313 4.45E-48 T 16-09-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 Pfam PF02581 Thiamine monophosphate synthase/TENI 136 311 2.4E-40 T 16-09-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 Gene3D G3DSA:3.90.79.10 7 132 2.4E-33 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 PRINTS PR00502 NUDIX hydrolase family signature 37 51 1.2E-7 T 16-09-2016 IPR020476 NUDIX hydrolase BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 PRINTS PR00502 NUDIX hydrolase family signature 51 66 1.2E-7 T 16-09-2016 IPR020476 NUDIX hydrolase BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 16-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 Gene3D G3DSA:3.20.20.70 133 313 8.5E-43 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 PANTHER PTHR22769:SF35 8 195 2.0E-52 T 16-09-2016 BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 Pfam PF00293 NUDIX domain 11 123 2.5E-18 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 PANTHER PTHR22769 8 195 2.0E-52 T 16-09-2016 BER92_RS03830 593e541e44b8c8a1772bc5bbf2bfc1ab 315 SUPERFAMILY SSF55811 8 130 1.27E-33 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 185 22.988 T 16-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 Pfam PF02357 Transcription termination factor nusG 2 116 2.3E-22 T 16-09-2016 IPR006645 NusG, N-terminal GO:0006355 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 Gene3D G3DSA:3.30.70.940 2 121 5.3E-40 T 16-09-2016 IPR006645 NusG, N-terminal GO:0006355 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 SUPERFAMILY SSF82679 2 121 1.83E-35 T 16-09-2016 IPR006645 NusG, N-terminal GO:0006355 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 SMART SM00738 1 119 5.4E-43 T 16-09-2016 IPR006645 NusG, N-terminal GO:0006355 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 PANTHER PTHR30265 2 184 7.4E-75 T 16-09-2016 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 SUPERFAMILY SSF50104 129 184 1.15E-18 T 16-09-2016 IPR008991 Translation protein SH3-like domain BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 Gene3D G3DSA:2.30.30.30 124 184 1.9E-30 T 16-09-2016 IPR014722 Ribosomal protein L2 domain 2 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 SMART SM00739 131 158 1.7E-5 T 16-09-2016 IPR005824 KOW BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 4 184 4.2E-61 T 16-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 PRINTS PR00338 Transcription termination factor NUSG signature 161 177 8.3E-19 T 16-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 PRINTS PR00338 Transcription termination factor NUSG signature 56 68 8.3E-19 T 16-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 PRINTS PR00338 Transcription termination factor NUSG signature 143 158 8.3E-19 T 16-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 ProSitePatterns PS01014 Transcription termination factor nusG signature. 168 177 - T 16-09-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site BER92_RS05105 32ea5ca21dca454efd19259a18b4c52c 185 Pfam PF00467 KOW motif 134 162 1.0E-7 T 16-09-2016 IPR005824 KOW BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 Pfam PF01476 LysM domain 478 521 1.1E-9 T 16-09-2016 IPR018392 LysM domain BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 SMART SM00257 477 522 6.5E-9 T 16-09-2016 IPR018392 LysM domain BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 Gene3D G3DSA:3.10.350.10 476 521 5.7E-12 T 16-09-2016 IPR018392 LysM domain BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 SUPERFAMILY SSF53955 195 342 3.94E-33 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 PANTHER PTHR21666 157 427 7.2E-198 T 16-09-2016 BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 PANTHER PTHR21666 478 521 7.2E-198 T 16-09-2016 BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 Pfam PF01464 Transglycosylase SLT domain 198 305 3.2E-21 T 16-09-2016 IPR008258 Transglycosylase SLT domain 1 BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 Gene3D G3DSA:1.10.530.10 194 346 3.3E-35 T 16-09-2016 BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 PANTHER PTHR21666:SF224 157 427 7.2E-198 T 16-09-2016 BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 PANTHER PTHR21666:SF224 478 521 7.2E-198 T 16-09-2016 BER92_RS07130 7e8a1215f2820bcb0769514f2400cac1 526 SUPERFAMILY SSF54106 476 521 4.19E-7 T 16-09-2016 IPR018392 LysM domain BER92_RS06255 2889ffaf4d7ab988ba4629e03b5d2670 236 PANTHER PTHR23421:SF84 1 126 1.7E-54 T 16-09-2016 BER92_RS06255 2889ffaf4d7ab988ba4629e03b5d2670 236 Gene3D G3DSA:3.20.20.80 47 212 8.4E-24 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS06255 2889ffaf4d7ab988ba4629e03b5d2670 236 Pfam PF01301 Glycosyl hydrolases family 35 50 220 8.6E-9 T 16-09-2016 IPR031330 Glycoside hydrolase 35, catalytic domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS06255 2889ffaf4d7ab988ba4629e03b5d2670 236 SUPERFAMILY SSF51445 60 230 9.48E-30 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS06255 2889ffaf4d7ab988ba4629e03b5d2670 236 PANTHER PTHR23421 1 126 1.7E-54 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS05290 e3a7388a436ec6c45ebc80d531c94510 127 SUPERFAMILY SSF64263 1 119 2.22E-49 T 16-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05290 e3a7388a436ec6c45ebc80d531c94510 127 PANTHER PTHR14413:SF5 1 120 2.7E-62 T 16-09-2016 BER92_RS05290 e3a7388a436ec6c45ebc80d531c94510 127 PANTHER PTHR14413 1 120 2.7E-62 T 16-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05290 e3a7388a436ec6c45ebc80d531c94510 127 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 16-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05290 e3a7388a436ec6c45ebc80d531c94510 127 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 4.6E-45 T 16-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05290 e3a7388a436ec6c45ebc80d531c94510 127 Pfam PF01196 Ribosomal protein L17 20 116 5.8E-32 T 16-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05290 e3a7388a436ec6c45ebc80d531c94510 127 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.856 T 16-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05290 e3a7388a436ec6c45ebc80d531c94510 127 Gene3D G3DSA:3.90.1030.10 1 117 2.8E-48 T 16-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS01005 a5e465771975707d5e0ea1b584dfa215 157 PANTHER PTHR38692 2 157 2.9E-83 T 16-09-2016 BER92_RS01005 a5e465771975707d5e0ea1b584dfa215 157 Hamap MF_00598 Protein Smg [smg]. 5 157 30.361 T 16-09-2016 IPR007456 Smg BER92_RS01005 a5e465771975707d5e0ea1b584dfa215 157 Pfam PF04361 Protein of unknown function (DUF494) 5 154 1.3E-54 T 16-09-2016 IPR007456 Smg BER92_RS01005 a5e465771975707d5e0ea1b584dfa215 157 PANTHER PTHR38692:SF1 2 157 2.9E-83 T 16-09-2016 BER92_RS09520 d12201cb87831cc04071400038227b17 751 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 186 7.4E-16 T 16-09-2016 IPR024478 4HB MCP domain BER92_RS09520 d12201cb87831cc04071400038227b17 751 PANTHER PTHR32089 143 249 6.4E-170 T 16-09-2016 BER92_RS09520 d12201cb87831cc04071400038227b17 751 PANTHER PTHR32089 430 698 6.4E-170 T 16-09-2016 BER92_RS09520 d12201cb87831cc04071400038227b17 751 PANTHER PTHR32089:SF63 430 698 6.4E-170 T 16-09-2016 BER92_RS09520 d12201cb87831cc04071400038227b17 751 PANTHER PTHR32089:SF63 143 249 6.4E-170 T 16-09-2016 BER92_RS09520 d12201cb87831cc04071400038227b17 751 SUPERFAMILY SSF158472 215 264 8.76E-8 T 16-09-2016 BER92_RS09520 d12201cb87831cc04071400038227b17 751 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 501 694 3.8E-63 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS09520 d12201cb87831cc04071400038227b17 751 Pfam PF00672 HAMP domain 195 263 1.7E-12 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09520 d12201cb87831cc04071400038227b17 751 SMART SM00283 448 695 3.9E-89 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS09520 d12201cb87831cc04071400038227b17 751 Gene3D G3DSA:1.10.287.950 463 667 2.3E-62 T 16-09-2016 BER92_RS09520 d12201cb87831cc04071400038227b17 751 SMART SM00304 215 267 5.1E-4 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09520 d12201cb87831cc04071400038227b17 751 SMART SM00304 395 447 20.0 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09520 d12201cb87831cc04071400038227b17 751 SUPERFAMILY SSF58104 415 697 1.07E-72 T 16-09-2016 BER92_RS14675 e943ed19b719993e14196dd0356c2df8 199 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 158 199 1.6E-14 T 16-09-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 BER92_RS14675 e943ed19b719993e14196dd0356c2df8 199 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 1 105 8.0E-26 T 16-09-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 BER92_RS14675 e943ed19b719993e14196dd0356c2df8 199 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 3 197 5.7E-61 T 16-09-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 BER92_RS14675 e943ed19b719993e14196dd0356c2df8 199 PIRSF PIRSF000190 2 199 8.6E-62 T 16-09-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 BER92_RS14675 e943ed19b719993e14196dd0356c2df8 199 SUPERFAMILY SSF50475 2 199 1.06E-55 T 16-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 BER92_RS14675 e943ed19b719993e14196dd0356c2df8 199 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 168 181 - T 16-09-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 BER92_RS14675 e943ed19b719993e14196dd0356c2df8 199 Gene3D G3DSA:2.30.110.10 3 199 4.6E-69 T 16-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 BER92_RS14675 e943ed19b719993e14196dd0356c2df8 199 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 4 199 34.56 T 16-09-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 BER92_RS14675 e943ed19b719993e14196dd0356c2df8 199 PANTHER PTHR10851 12 199 6.2E-81 T 16-09-2016 BER92_RS13400 06421ec83b51405d8485c10ad67c2f43 293 PANTHER PTHR13774:SF18 1 292 1.4E-112 T 16-09-2016 BER92_RS13400 06421ec83b51405d8485c10ad67c2f43 293 PIRSF PIRSF016184 1 292 1.1E-65 T 16-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- BER92_RS13400 06421ec83b51405d8485c10ad67c2f43 293 Pfam PF02567 Phenazine biosynthesis-like protein 9 271 1.3E-50 T 16-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- BER92_RS13400 06421ec83b51405d8485c10ad67c2f43 293 SUPERFAMILY SSF54506 4 290 6.11E-61 T 16-09-2016 BER92_RS13400 06421ec83b51405d8485c10ad67c2f43 293 Gene3D G3DSA:3.10.310.10 132 281 5.3E-32 T 16-09-2016 BER92_RS13400 06421ec83b51405d8485c10ad67c2f43 293 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 275 3.6E-50 T 16-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- BER92_RS13400 06421ec83b51405d8485c10ad67c2f43 293 Gene3D G3DSA:3.10.310.10 2 131 1.2E-36 T 16-09-2016 BER92_RS13400 06421ec83b51405d8485c10ad67c2f43 293 PANTHER PTHR13774 1 292 1.4E-112 T 16-09-2016 BER92_RS08845 4a5133ab5e308007c5f4b70691a2549e 337 Gene3D G3DSA:1.25.40.10 67 182 2.5E-19 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS08845 4a5133ab5e308007c5f4b70691a2549e 337 Pfam PF13432 Tetratricopeptide repeat 68 120 4.6E-7 T 16-09-2016 BER92_RS08845 4a5133ab5e308007c5f4b70691a2549e 337 Pfam PF13432 Tetratricopeptide repeat 142 177 0.0019 T 16-09-2016 BER92_RS08845 4a5133ab5e308007c5f4b70691a2549e 337 SUPERFAMILY SSF48452 71 182 8.93E-17 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS08845 4a5133ab5e308007c5f4b70691a2549e 337 PANTHER PTHR23083 66 177 4.6E-13 T 16-09-2016 BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 Pfam PF00919 Uncharacterized protein family UPF0004 7 99 5.0E-20 T 16-09-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 PANTHER PTHR11918 5 441 8.4E-232 T 16-09-2016 IPR023970 Methylthiotransferase/radical SAM-type protein BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 16-09-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 6 439 60.526 T 16-09-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 PANTHER PTHR11918:SF57 5 441 8.4E-232 T 16-09-2016 BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 SMART SM00729 137 362 3.6E-53 T 16-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 Gene3D G3DSA:3.80.30.20 135 373 2.2E-72 T 16-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 Gene3D G3DSA:2.40.50.140 377 440 5.6E-21 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 7 437 2.2E-173 T 16-09-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 Pfam PF04055 Radical SAM superfamily 143 320 5.4E-30 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 7 437 8.4E-99 T 16-09-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 BER92_RS12365 93d8d6e06cf437d4c1ad3c6919eb6f11 454 SUPERFAMILY SSF102114 116 367 8.76E-52 T 16-09-2016 BER92_RS12635 077d63b750aa0f240859498c37925897 592 Pfam PF01019 Gamma-glutamyltranspeptidase 62 578 1.7E-163 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PANTHER PTHR11686:SF9 12 587 2.8E-198 T 16-09-2016 BER92_RS12635 077d63b750aa0f240859498c37925897 592 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 49 577 1.0E-134 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PANTHER PTHR11686 12 587 2.8E-198 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 259 275 4.7E-64 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 474 491 4.7E-64 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 161 180 4.7E-64 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 386 404 4.7E-64 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 143 161 4.7E-64 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 410 428 4.7E-64 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 289 308 4.7E-64 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 451 466 4.7E-64 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 69 94 4.7E-64 T 16-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 BER92_RS12635 077d63b750aa0f240859498c37925897 592 SUPERFAMILY SSF56235 44 578 7.91E-163 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS04425 6cdd303fc80dd5db1de269c56b51b496 720 PANTHER PTHR32552:SF1 8 720 0.0 T 16-09-2016 BER92_RS04425 6cdd303fc80dd5db1de269c56b51b496 720 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 720 5.5E-160 T 16-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 BER92_RS04425 6cdd303fc80dd5db1de269c56b51b496 720 Gene3D G3DSA:2.170.130.10 29 169 4.4E-20 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS04425 6cdd303fc80dd5db1de269c56b51b496 720 Gene3D G3DSA:2.40.170.20 178 720 9.2E-110 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS04425 6cdd303fc80dd5db1de269c56b51b496 720 PANTHER PTHR32552 8 720 0.0 T 16-09-2016 BER92_RS04425 6cdd303fc80dd5db1de269c56b51b496 720 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 703 720 - T 16-09-2016 IPR010917 TonB-dependent receptor, conserved site BER92_RS04425 6cdd303fc80dd5db1de269c56b51b496 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 159 3.3E-8 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS04425 6cdd303fc80dd5db1de269c56b51b496 720 SUPERFAMILY SSF56935 26 720 1.31E-94 T 16-09-2016 BER92_RS04425 6cdd303fc80dd5db1de269c56b51b496 720 Pfam PF00593 TonB dependent receptor 478 718 7.3E-25 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 SUPERFAMILY SSF56634 36 531 5.63E-215 T 16-09-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 373 381 - T 16-09-2016 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 SUPERFAMILY SSF52317 555 673 2.06E-13 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 PIRSF PIRSF038927 18 700 2.1E-295 T 16-09-2016 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 PANTHER PTHR11465:SF7 21 590 0.0 T 16-09-2016 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 Gene3D G3DSA:2.40.180.10 32 398 7.0E-175 T 16-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 PANTHER PTHR11465 21 590 0.0 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 Pfam PF00199 Catalase 43 428 3.5E-177 T 16-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 ProSitePatterns PS00438 Catalase proximal active site signature. 79 95 - T 16-09-2016 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 Pfam PF06628 Catalase-related immune-responsive 457 519 2.1E-22 T 16-09-2016 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 SMART SM01060 43 431 3.7E-274 T 16-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 PRINTS PR00067 Catalase signature 56 79 3.0E-67 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 PRINTS PR00067 Catalase signature 360 386 3.0E-67 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 PRINTS PR00067 Catalase signature 140 157 3.0E-67 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 PRINTS PR00067 Catalase signature 328 355 3.0E-67 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 PRINTS PR00067 Catalase signature 119 137 3.0E-67 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 PRINTS PR00067 Catalase signature 159 177 3.0E-67 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS15065 38459f242feb957d671ea16413c9fbe8 702 Gene3D G3DSA:3.40.50.880 556 701 1.2E-38 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS10660 4800645429de5a0667426b2e8a016bd6 169 SUPERFAMILY SSF52540 54 140 2.64E-14 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10660 4800645429de5a0667426b2e8a016bd6 169 Gene3D G3DSA:3.40.50.300 39 138 7.0E-21 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10660 4800645429de5a0667426b2e8a016bd6 169 Pfam PF13245 Part of AAA domain 69 121 2.7E-10 T 16-09-2016 BER92_RS19220 860a48e25926b61758fe922edbf23b79 99 PANTHER PTHR35849 1 99 1.2E-23 T 16-09-2016 BER92_RS19220 860a48e25926b61758fe922edbf23b79 99 Gene3D G3DSA:3.30.750.24 13 69 2.6E-5 T 16-09-2016 IPR002645 STAS domain BER92_RS19220 860a48e25926b61758fe922edbf23b79 99 SUPERFAMILY SSF52091 4 70 3.34E-8 T 16-09-2016 IPR002645 STAS domain BER92_RS19220 860a48e25926b61758fe922edbf23b79 99 Pfam PF13466 STAS domain 14 90 4.2E-9 T 16-09-2016 IPR002645 STAS domain BER92_RS19220 860a48e25926b61758fe922edbf23b79 99 PANTHER PTHR35849:SF1 1 99 1.2E-23 T 16-09-2016 BER92_RS04285 5d8095cadbe5fb971d949914f9350fd7 207 SUPERFAMILY SSF53098 35 201 1.77E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS04285 5d8095cadbe5fb971d949914f9350fd7 207 PANTHER PTHR32552 1 205 6.5E-67 T 16-09-2016 BER92_RS04285 5d8095cadbe5fb971d949914f9350fd7 207 Pfam PF00665 Integrase core domain 42 156 3.8E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS04285 5d8095cadbe5fb971d949914f9350fd7 207 Gene3D G3DSA:3.30.420.10 36 195 1.8E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS13610 551cc8311f49ec74f4e49ba304bd08ab 222 Gene3D G3DSA:3.40.50.170 8 199 1.3E-60 T 16-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS13610 551cc8311f49ec74f4e49ba304bd08ab 222 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 9 195 7.7E-63 T 16-09-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 BER92_RS13610 551cc8311f49ec74f4e49ba304bd08ab 222 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 9 192 27.876 T 16-09-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 BER92_RS13610 551cc8311f49ec74f4e49ba304bd08ab 222 PANTHER PTHR10520:SF40 1 198 9.4E-136 T 16-09-2016 BER92_RS13610 551cc8311f49ec74f4e49ba304bd08ab 222 SUPERFAMILY SSF53328 8 204 3.92E-58 T 16-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS13610 551cc8311f49ec74f4e49ba304bd08ab 222 PANTHER PTHR10520 1 198 9.4E-136 T 16-09-2016 BER92_RS13610 551cc8311f49ec74f4e49ba304bd08ab 222 Pfam PF00551 Formyl transferase 9 184 8.5E-52 T 16-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BER92_RS04825 101e89b5e61a6b0c9e0f3a835c9dc325 186 PANTHER PTHR11079:SF77 12 179 1.8E-100 T 16-09-2016 BER92_RS04825 101e89b5e61a6b0c9e0f3a835c9dc325 186 Gene3D G3DSA:3.40.140.10 18 178 6.8E-30 T 16-09-2016 BER92_RS04825 101e89b5e61a6b0c9e0f3a835c9dc325 186 PANTHER PTHR11079 12 179 1.8E-100 T 16-09-2016 BER92_RS04825 101e89b5e61a6b0c9e0f3a835c9dc325 186 SUPERFAMILY SSF53927 6 180 2.26E-29 T 16-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 BER92_RS04825 101e89b5e61a6b0c9e0f3a835c9dc325 186 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 28 130 2.9E-10 T 16-09-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 BER92_RS14695 8922e01400c42f9c5ce9ffd87b2f226a 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 20 29 - T 16-09-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS14695 8922e01400c42f9c5ce9ffd87b2f226a 354 SUPERFAMILY SSF51726 1 353 1.41E-113 T 16-09-2016 BER92_RS14695 8922e01400c42f9c5ce9ffd87b2f226a 354 PANTHER PTHR21091 1 354 9.8E-150 T 16-09-2016 BER92_RS14695 8922e01400c42f9c5ce9ffd87b2f226a 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 140 156 - T 16-09-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS14695 8922e01400c42f9c5ce9ffd87b2f226a 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 7 349 1.8E-128 T 16-09-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS14695 8922e01400c42f9c5ce9ffd87b2f226a 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 3 350 2.3E-136 T 16-09-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS14695 8922e01400c42f9c5ce9ffd87b2f226a 354 PANTHER PTHR21091:SF2 1 354 9.8E-150 T 16-09-2016 BER92_RS14695 8922e01400c42f9c5ce9ffd87b2f226a 354 Gene3D G3DSA:3.20.20.210 1 352 3.0E-148 T 16-09-2016 BER92_RS14695 8922e01400c42f9c5ce9ffd87b2f226a 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 4 352 49.858 T 16-09-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS02900 049d29a7051fa5f7e31da3403bebfd48 172 PANTHER PTHR20941 1 152 1.6E-47 T 16-09-2016 BER92_RS02900 049d29a7051fa5f7e31da3403bebfd48 172 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 130 3.9E-28 T 16-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS02900 049d29a7051fa5f7e31da3403bebfd48 172 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 130 2.3E-23 T 16-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS02900 049d29a7051fa5f7e31da3403bebfd48 172 Gene3D G3DSA:3.30.70.560 3 150 4.5E-39 T 16-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS02900 049d29a7051fa5f7e31da3403bebfd48 172 SUPERFAMILY SSF55083 1 151 2.09E-38 T 16-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 PANTHER PTHR11911 53 422 8.0E-66 T 16-09-2016 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 SMART SM00924 36 139 9.2E-38 T 16-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 TIGRFAM TIGR00400 mgtE: magnesium transporter 21 451 8.8E-89 T 16-09-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 Gene3D G3DSA:1.25.60.10 10 129 8.9E-25 T 16-09-2016 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 SUPERFAMILY SSF54631 138 277 7.83E-26 T 16-09-2016 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 Pfam PF01769 Divalent cation transporter 323 444 3.4E-26 T 16-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 Gene3D G3DSA:3.10.580.10 130 264 2.6E-16 T 16-09-2016 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 SUPERFAMILY SSF158791 13 136 4.05E-29 T 16-09-2016 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 PANTHER PTHR11911:SF99 53 422 8.0E-66 T 16-09-2016 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 SUPERFAMILY SSF161093 280 451 1.11E-49 T 16-09-2016 BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 Pfam PF03448 MgtE intracellular N domain 37 137 6.6E-27 T 16-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 Pfam PF00571 CBS domain 221 257 0.001 T 16-09-2016 IPR000644 CBS domain BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 Pfam PF00571 CBS domain 139 195 0.0043 T 16-09-2016 IPR000644 CBS domain BER92_RS13710 1cb057d7b1daa9b54b393f77796be390 453 Gene3D G3DSA:1.10.357.20 282 451 1.7E-52 T 16-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 BER92_RS05370 15ba22b18b57fab53b65b5a4a22d6a58 66 SUPERFAMILY SSF54285 2 65 1.55E-17 T 16-09-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BER92_RS05370 15ba22b18b57fab53b65b5a4a22d6a58 66 Pfam PF02597 ThiS family 3 66 5.8E-14 T 16-09-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 BER92_RS05370 15ba22b18b57fab53b65b5a4a22d6a58 66 Gene3D G3DSA:3.10.20.30 1 66 1.5E-26 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS05370 15ba22b18b57fab53b65b5a4a22d6a58 66 PANTHER PTHR34472:SF1 1 66 8.9E-24 T 16-09-2016 BER92_RS05370 15ba22b18b57fab53b65b5a4a22d6a58 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 2.1E-22 T 16-09-2016 IPR010035 ThiS, thiamine-biosynthesis BER92_RS05370 15ba22b18b57fab53b65b5a4a22d6a58 66 PANTHER PTHR34472 1 66 8.9E-24 T 16-09-2016 BER92_RS12065 9257f50ebfce0fc655793778196061c2 182 PANTHER PTHR38784:SF1 1 182 7.3E-96 T 16-09-2016 BER92_RS12065 9257f50ebfce0fc655793778196061c2 182 PANTHER PTHR38784 1 182 7.3E-96 T 16-09-2016 BER92_RS12065 9257f50ebfce0fc655793778196061c2 182 Gene3D G3DSA:3.10.640.10 1 178 7.6E-75 T 16-09-2016 BER92_RS12065 9257f50ebfce0fc655793778196061c2 182 PIRSF PIRSF011484 1 180 2.6E-63 T 16-09-2016 IPR009822 YaeQ BER92_RS12065 9257f50ebfce0fc655793778196061c2 182 SUPERFAMILY SSF52980 5 178 1.37E-67 T 16-09-2016 IPR011335 Restriction endonuclease type II-like BER92_RS12065 9257f50ebfce0fc655793778196061c2 182 SMART SM01322 1 176 5.7E-110 T 16-09-2016 IPR009822 YaeQ BER92_RS12065 9257f50ebfce0fc655793778196061c2 182 Pfam PF07152 YaeQ protein 1 173 5.4E-71 T 16-09-2016 IPR009822 YaeQ BER92_RS04200 1a99dfaf12b456c1f389c85bbac49038 193 PANTHER PTHR13256 28 184 3.4E-58 T 16-09-2016 BER92_RS04200 1a99dfaf12b456c1f389c85bbac49038 193 PANTHER PTHR13256:SF24 28 184 3.4E-58 T 16-09-2016 BER92_RS04200 1a99dfaf12b456c1f389c85bbac49038 193 Pfam PF13302 Acetyltransferase (GNAT) domain 71 157 5.2E-14 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS04200 1a99dfaf12b456c1f389c85bbac49038 193 SUPERFAMILY SSF55729 13 181 1.61E-35 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS04200 1a99dfaf12b456c1f389c85bbac49038 193 Gene3D G3DSA:3.40.630.30 14 182 3.0E-38 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS13815 246d71a6e941ae970f3d25fcd3f83cf1 284 PANTHER PTHR32552 12 282 6.8E-88 T 16-09-2016 BER92_RS13815 246d71a6e941ae970f3d25fcd3f83cf1 284 Pfam PF00665 Integrase core domain 119 233 3.1E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS13815 246d71a6e941ae970f3d25fcd3f83cf1 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS13815 246d71a6e941ae970f3d25fcd3f83cf1 284 SUPERFAMILY SSF53098 112 278 1.9E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS13815 246d71a6e941ae970f3d25fcd3f83cf1 284 Gene3D G3DSA:3.30.420.10 113 272 1.3E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS03490 ebc05ff213a9a316884d799fe1a8f698 79 ProSitePatterns PS00202 Rubredoxin signature. 57 67 - T 16-09-2016 IPR018527 Rubredoxin, iron-binding site GO:0046872 BER92_RS03490 ebc05ff213a9a316884d799fe1a8f698 79 PRINTS PR00163 Rubredoxin signature 27 43 2.3E-7 T 16-09-2016 IPR024935 Rubredoxin domain GO:0005506 BER92_RS03490 ebc05ff213a9a316884d799fe1a8f698 79 PRINTS PR00163 Rubredoxin signature 57 73 2.3E-7 T 16-09-2016 IPR024935 Rubredoxin domain GO:0005506 BER92_RS03490 ebc05ff213a9a316884d799fe1a8f698 79 Gene3D G3DSA:2.20.28.10 24 77 1.3E-24 T 16-09-2016 IPR004039 Rubredoxin-type fold BER92_RS03490 ebc05ff213a9a316884d799fe1a8f698 79 SUPERFAMILY SSF57802 24 77 7.57E-22 T 16-09-2016 BER92_RS03490 ebc05ff213a9a316884d799fe1a8f698 79 Pfam PF00301 Rubredoxin 28 73 5.8E-21 T 16-09-2016 IPR024935 Rubredoxin domain GO:0005506 BER92_RS08545 81ca3bf68fb3bf2832a4c263343eca93 91 Gene3D G3DSA:3.30.70.360 9 87 7.1E-5 T 16-09-2016 IPR011650 Peptidase M20, dimerisation domain BER92_RS08545 81ca3bf68fb3bf2832a4c263343eca93 91 TIGRFAM TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein 1 90 4.0E-43 T 16-09-2016 IPR013433 Putative polyhydroxyalkanoic acid system protein BER92_RS08545 81ca3bf68fb3bf2832a4c263343eca93 91 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 4 90 1.0E-29 T 16-09-2016 IPR013433 Putative polyhydroxyalkanoic acid system protein BER92_RS18790 f324546bdc3de3b5b7fee8294f1faa24 351 Pfam PF07859 alpha/beta hydrolase fold 112 313 1.6E-14 T 16-09-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 BER92_RS18790 f324546bdc3de3b5b7fee8294f1faa24 351 PANTHER PTHR23024 94 335 9.5E-56 T 16-09-2016 BER92_RS18790 f324546bdc3de3b5b7fee8294f1faa24 351 Gene3D G3DSA:3.40.50.1820 86 335 5.8E-66 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18790 f324546bdc3de3b5b7fee8294f1faa24 351 SUPERFAMILY SSF53474 91 342 5.36E-42 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18790 f324546bdc3de3b5b7fee8294f1faa24 351 PANTHER PTHR23024:SF41 94 335 9.5E-56 T 16-09-2016 BER92_RS18975 15b142af0c079bde8facfd5fbfe6b99b 288 Pfam PF00561 alpha/beta hydrolase fold 26 137 2.9E-17 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS18975 15b142af0c079bde8facfd5fbfe6b99b 288 PANTHER PTHR10992 26 282 1.9E-34 T 16-09-2016 BER92_RS18975 15b142af0c079bde8facfd5fbfe6b99b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 1.9E-6 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS18975 15b142af0c079bde8facfd5fbfe6b99b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 1.9E-6 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS18975 15b142af0c079bde8facfd5fbfe6b99b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 1.9E-6 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS18975 15b142af0c079bde8facfd5fbfe6b99b 288 SUPERFAMILY SSF53474 19 282 7.89E-50 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18975 15b142af0c079bde8facfd5fbfe6b99b 288 PANTHER PTHR10992:SF909 26 282 1.9E-34 T 16-09-2016 BER92_RS18975 15b142af0c079bde8facfd5fbfe6b99b 288 Gene3D G3DSA:3.40.50.1820 21 282 5.9E-46 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 ProSitePatterns PS01244 Aconitase family signature 2. 406 419 - T 16-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 Gene3D G3DSA:3.30.499.10 3 162 8.4E-21 T 16-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 473 61.61 T 16-09-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 472 1.7E-233 T 16-09-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 Pfam PF00330 Aconitase family (aconitate hydratase) 8 464 1.5E-153 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PANTHER PTHR11670:SF38 1 313 3.1E-282 T 16-09-2016 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PANTHER PTHR11670:SF38 333 474 3.1E-282 T 16-09-2016 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 SUPERFAMILY SSF53732 3 472 4.05E-162 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PRINTS PR00415 Aconitase family signature 215 228 2.0E-47 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PRINTS PR00415 Aconitase family signature 349 360 2.0E-47 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PRINTS PR00415 Aconitase family signature 114 122 2.0E-47 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PRINTS PR00415 Aconitase family signature 292 306 2.0E-47 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PRINTS PR00415 Aconitase family signature 139 154 2.0E-47 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PRINTS PR00415 Aconitase family signature 88 101 2.0E-47 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PRINTS PR00415 Aconitase family signature 125 138 2.0E-47 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PRINTS PR00415 Aconitase family signature 201 214 2.0E-47 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PRINTS PR00415 Aconitase family signature 406 419 2.0E-47 T 16-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PANTHER PTHR11670 1 313 3.1E-282 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 ProSitePatterns PS00450 Aconitase family signature 1. 345 361 - T 16-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 Gene3D G3DSA:3.40.1060.10 172 285 8.2E-39 T 16-09-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 Gene3D G3DSA:3.30.499.10 317 473 1.3E-59 T 16-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS03295 70ec450dfa38b2bea86f37ca0c328527 482 PANTHER PTHR11670 333 474 3.1E-282 T 16-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 PANTHER PTHR11596 2 453 4.2E-227 T 16-09-2016 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 Pfam PF00245 Alkaline phosphatase 71 533 1.2E-122 T 16-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 PRINTS PR00113 Alkaline phosphatase signature 173 193 3.0E-44 T 16-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 PRINTS PR00113 Alkaline phosphatase signature 324 353 3.0E-44 T 16-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 PRINTS PR00113 Alkaline phosphatase signature 71 91 3.0E-44 T 16-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 PRINTS PR00113 Alkaline phosphatase signature 127 142 3.0E-44 T 16-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 PRINTS PR00113 Alkaline phosphatase signature 236 246 3.0E-44 T 16-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 SMART SM00098 72 538 3.1E-153 T 16-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 Gene3D G3DSA:3.40.720.10 60 534 1.8E-155 T 16-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 SUPERFAMILY SSF53649 66 534 2.75E-142 T 16-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 PANTHER PTHR11596 471 557 4.2E-227 T 16-09-2016 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 PANTHER PTHR11596:SF5 471 557 4.2E-227 T 16-09-2016 BER92_RS12705 bf1edf778bc15cf2ed6c7fe2cc18c916 568 PANTHER PTHR11596:SF5 2 453 4.2E-227 T 16-09-2016 BER92_RS01165 ac6186600d859911668437a9467ee2c0 575 Pfam PF00474 Sodium:solute symporter family 67 492 1.8E-107 T 16-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 BER92_RS01165 ac6186600d859911668437a9467ee2c0 575 PANTHER PTHR11819:SF13 263 562 1.7E-239 T 16-09-2016 BER92_RS01165 ac6186600d859911668437a9467ee2c0 575 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 67 492 8.9E-57 T 16-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 BER92_RS01165 ac6186600d859911668437a9467ee2c0 575 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 182 207 - T 16-09-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 BER92_RS01165 ac6186600d859911668437a9467ee2c0 575 PANTHER PTHR11819 263 562 1.7E-239 T 16-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 BER92_RS01165 ac6186600d859911668437a9467ee2c0 575 PANTHER PTHR11819 36 247 1.7E-239 T 16-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 BER92_RS01165 ac6186600d859911668437a9467ee2c0 575 PANTHER PTHR11819:SF13 36 247 1.7E-239 T 16-09-2016 BER92_RS14545 ed1debcbed25d0cbdb1ee52055481c1a 565 PANTHER PTHR16254 1 562 0.0 T 16-09-2016 BER92_RS14545 ed1debcbed25d0cbdb1ee52055481c1a 565 Pfam PF00999 Sodium/hydrogen exchanger family 12 390 1.3E-79 T 16-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BER92_RS14545 ed1debcbed25d0cbdb1ee52055481c1a 565 Gene3D G3DSA:3.40.50.720 420 553 8.4E-36 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS14545 ed1debcbed25d0cbdb1ee52055481c1a 565 PANTHER PTHR16254:SF17 1 562 0.0 T 16-09-2016 BER92_RS14545 ed1debcbed25d0cbdb1ee52055481c1a 565 SUPERFAMILY SSF51735 422 553 4.38E-27 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS14545 ed1debcbed25d0cbdb1ee52055481c1a 565 Pfam PF02254 TrkA-N domain 425 537 7.1E-21 T 16-09-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BER92_RS08030 699e1f1ecedb26f1f23546c393d47ac6 210 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 15 192 1.6E-53 T 16-09-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG BER92_RS08030 699e1f1ecedb26f1f23546c393d47ac6 210 PANTHER PTHR31223 12 200 2.2E-96 T 16-09-2016 BER92_RS08030 699e1f1ecedb26f1f23546c393d47ac6 210 Gene3D G3DSA:3.40.50.450 12 201 6.6E-66 T 16-09-2016 BER92_RS08030 699e1f1ecedb26f1f23546c393d47ac6 210 SUPERFAMILY SSF102405 14 192 1.53E-59 T 16-09-2016 BER92_RS08030 699e1f1ecedb26f1f23546c393d47ac6 210 PANTHER PTHR31223:SF0 12 200 2.2E-96 T 16-09-2016 BER92_RS08030 699e1f1ecedb26f1f23546c393d47ac6 210 Pfam PF03641 Possible lysine decarboxylase 59 178 1.5E-36 T 16-09-2016 IPR031100 LOG family BER92_RS03945 a30b98c5262a9d7d635a6f8d9878b424 546 SUPERFAMILY SSF56317 4 245 3.79E-55 T 16-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 BER92_RS03945 a30b98c5262a9d7d635a6f8d9878b424 546 Pfam PF00795 Carbon-nitrogen hydrolase 6 243 2.0E-21 T 16-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 BER92_RS03945 a30b98c5262a9d7d635a6f8d9878b424 546 TIGRFAM TIGR00552 nadE: NAD+ synthetase 277 526 9.0E-58 T 16-09-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 BER92_RS03945 a30b98c5262a9d7d635a6f8d9878b424 546 SUPERFAMILY SSF52402 269 528 5.95E-76 T 16-09-2016 BER92_RS03945 a30b98c5262a9d7d635a6f8d9878b424 546 Pfam PF02540 NAD synthase 270 519 1.9E-68 T 16-09-2016 IPR022310 NAD/GMP synthase BER92_RS03945 a30b98c5262a9d7d635a6f8d9878b424 546 PIRSF PIRSF006630 2 546 1.5E-182 T 16-09-2016 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|UniPathway: UPA00253 BER92_RS03945 a30b98c5262a9d7d635a6f8d9878b424 546 Gene3D G3DSA:3.60.110.10 3 245 7.3E-56 T 16-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 BER92_RS03945 a30b98c5262a9d7d635a6f8d9878b424 546 PANTHER PTHR23090 2 541 1.4E-168 T 16-09-2016 BER92_RS03945 a30b98c5262a9d7d635a6f8d9878b424 546 Gene3D G3DSA:3.40.50.620 269 527 7.6E-73 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 532 562 - T 16-09-2016 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 Gene3D G3DSA:2.130.10.120 98 431 8.2E-100 T 16-09-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 Gene3D G3DSA:3.40.50.1820 441 687 2.3E-35 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 525 544 2.1E-47 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 555 575 2.1E-47 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 631 653 2.1E-47 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 497 521 2.1E-47 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 613 628 2.1E-47 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 471 489 2.1E-47 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 PANTHER PTHR11757:SF3 25 702 0.0 T 16-09-2016 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 SUPERFAMILY SSF50993 24 433 5.23E-81 T 16-09-2016 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 Pfam PF00326 Prolyl oligopeptidase family 488 702 1.6E-66 T 16-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 PANTHER PTHR11757 25 702 0.0 T 16-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 SUPERFAMILY SSF53474 439 699 1.68E-41 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02660 dc55281bc3f7e192bf8010472ee33927 704 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 28 429 3.0E-114 T 16-09-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 BER92_RS00145 99ae798433614eeac96bb656c50a8ebb 461 PANTHER PTHR11748:SF35 8 460 9.9E-147 T 16-09-2016 BER92_RS00145 99ae798433614eeac96bb656c50a8ebb 461 SUPERFAMILY SSF56176 9 217 7.01E-70 T 16-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 BER92_RS00145 99ae798433614eeac96bb656c50a8ebb 461 SUPERFAMILY SSF55103 192 460 8.01E-63 T 16-09-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BER92_RS00145 99ae798433614eeac96bb656c50a8ebb 461 Pfam PF01565 FAD binding domain 43 182 2.4E-42 T 16-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BER92_RS00145 99ae798433614eeac96bb656c50a8ebb 461 Pfam PF02913 FAD linked oxidases, C-terminal domain 226 457 2.0E-66 T 16-09-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 BER92_RS00145 99ae798433614eeac96bb656c50a8ebb 461 Gene3D G3DSA:1.10.45.10 418 457 7.3E-16 T 16-09-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BER92_RS00145 99ae798433614eeac96bb656c50a8ebb 461 PANTHER PTHR11748 8 460 9.9E-147 T 16-09-2016 BER92_RS00145 99ae798433614eeac96bb656c50a8ebb 461 Gene3D G3DSA:3.30.43.10 6 98 1.3E-26 T 16-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 BER92_RS00145 99ae798433614eeac96bb656c50a8ebb 461 Gene3D G3DSA:3.30.465.10 99 218 3.5E-41 T 16-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 BER92_RS10030 4660f09ebf954083220983f3a710c4ea 189 PANTHER PTHR19136 1 183 6.2E-28 T 16-09-2016 BER92_RS10030 4660f09ebf954083220983f3a710c4ea 189 PANTHER PTHR19136:SF81 1 183 6.2E-28 T 16-09-2016 BER92_RS10030 4660f09ebf954083220983f3a710c4ea 189 SUPERFAMILY SSF53448 6 180 6.98E-26 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS10030 4660f09ebf954083220983f3a710c4ea 189 Pfam PF12804 MobA-like NTP transferase domain 9 150 7.9E-26 T 16-09-2016 IPR025877 MobA-like NTP transferase BER92_RS10030 4660f09ebf954083220983f3a710c4ea 189 Gene3D G3DSA:3.90.550.10 7 183 1.3E-35 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS10030 4660f09ebf954083220983f3a710c4ea 189 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 5 183 18.612 T 16-09-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 BER92_RS17965 857a0e9bc3101081ca43c43508e8053b 238 Pfam PF12710 haloacid dehalogenase-like hydrolase 15 197 2.8E-25 T 16-09-2016 BER92_RS17965 857a0e9bc3101081ca43c43508e8053b 238 Gene3D G3DSA:3.40.50.1000 97 231 1.9E-22 T 16-09-2016 IPR023214 HAD-like domain BER92_RS17965 857a0e9bc3101081ca43c43508e8053b 238 SUPERFAMILY SSF56784 12 219 5.33E-21 T 16-09-2016 IPR023214 HAD-like domain BER92_RS07000 84f8c1405e6a2e205f2ed9567ddcacb1 162 SMART SM01118 2 155 2.7E-22 T 16-09-2016 IPR023577 CYTH domain BER92_RS07000 84f8c1405e6a2e205f2ed9567ddcacb1 162 SUPERFAMILY SSF55154 1 155 3.6E-41 T 16-09-2016 IPR033469 CYTH-like domain BER92_RS07000 84f8c1405e6a2e205f2ed9567ddcacb1 162 PANTHER PTHR40114 2 162 3.7E-48 T 16-09-2016 BER92_RS07000 84f8c1405e6a2e205f2ed9567ddcacb1 162 Gene3D G3DSA:2.40.320.10 1 158 9.9E-53 T 16-09-2016 IPR023577 CYTH domain BER92_RS07000 84f8c1405e6a2e205f2ed9567ddcacb1 162 PIRSF PIRSF016487 1 162 6.5E-61 T 16-09-2016 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like BER92_RS07000 84f8c1405e6a2e205f2ed9567ddcacb1 162 Pfam PF01928 CYTH domain 3 145 4.2E-15 T 16-09-2016 IPR023577 CYTH domain BER92_RS12380 72903f02c1a8d5b6eed2028893ceb2fc 220 Gene3D G3DSA:3.40.50.1820 3 220 3.1E-41 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS12380 72903f02c1a8d5b6eed2028893ceb2fc 220 PANTHER PTHR17630 13 219 2.7E-41 T 16-09-2016 BER92_RS12380 72903f02c1a8d5b6eed2028893ceb2fc 220 Pfam PF01738 Dienelactone hydrolase family 15 218 1.7E-35 T 16-09-2016 IPR002925 Dienelactone hydrolase GO:0016787 BER92_RS12380 72903f02c1a8d5b6eed2028893ceb2fc 220 SUPERFAMILY SSF53474 3 220 1.88E-34 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 ProSitePatterns PS00592 Glycosyl hydrolases family 9 active sites signature 1. 495 511 - T 16-09-2016 IPR018221 Glycoside hydrolase family 9, His active site KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 SUPERFAMILY SSF81296 32 123 2.38E-17 T 16-09-2016 IPR014756 Immunoglobulin E-set BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 PANTHER PTHR22298:SF39 297 519 8.5E-34 T 16-09-2016 BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 Gene3D G3DSA:2.60.40.10 30 125 1.2E-22 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 Gene3D G3DSA:1.50.10.10 128 581 1.3E-140 T 16-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 SUPERFAMILY SSF48208 128 580 5.95E-117 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 Pfam PF02927 Cellulase N-terminal ig-like domain 33 115 2.4E-18 T 16-09-2016 IPR004197 Cellulase, Ig-like domain GO:0005975|GO:0008810 BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 Pfam PF00759 Glycosyl hydrolase family 9 129 576 5.8E-90 T 16-09-2016 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 PANTHER PTHR22298 297 519 8.5E-34 T 16-09-2016 BER92_RS12630 ec0c54d8f3a028fdc8dcc36ece6e669e 585 ProSitePatterns PS00698 Glycosyl hydrolases family 9 active sites signature 2. 553 571 - T 16-09-2016 IPR033126 Glycosyl hydrolases family 9, Asp/Glu active sites KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BER92_RS18510 0e3b2de601166f097d4607b5d30352f5 191 PANTHER PTHR24198 49 175 1.6E-28 T 16-09-2016 BER92_RS18510 0e3b2de601166f097d4607b5d30352f5 191 SUPERFAMILY SSF48403 44 171 1.36E-30 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS18510 0e3b2de601166f097d4607b5d30352f5 191 Gene3D G3DSA:1.25.40.20 49 175 1.8E-31 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS18510 0e3b2de601166f097d4607b5d30352f5 191 SMART SM00248 140 169 8.5 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS18510 0e3b2de601166f097d4607b5d30352f5 191 SMART SM00248 107 136 170.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS18510 0e3b2de601166f097d4607b5d30352f5 191 SMART SM00248 74 103 0.0059 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS18510 0e3b2de601166f097d4607b5d30352f5 191 SMART SM00248 41 70 4500.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS18510 0e3b2de601166f097d4607b5d30352f5 191 Pfam PF12796 Ankyrin repeats (3 copies) 48 133 9.9E-11 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS15330 86260bfe543137bfdd2d51ef17688f63 180 PANTHER PTHR14969 25 173 6.0E-30 T 16-09-2016 BER92_RS15330 86260bfe543137bfdd2d51ef17688f63 180 SUPERFAMILY SSF48317 12 173 4.58E-35 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS15330 86260bfe543137bfdd2d51ef17688f63 180 SMART SM00014 62 172 2.0E-12 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS15330 86260bfe543137bfdd2d51ef17688f63 180 Pfam PF01569 PAP2 superfamily 67 173 2.3E-20 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS15330 86260bfe543137bfdd2d51ef17688f63 180 Gene3D G3DSA:1.20.144.10 15 173 2.8E-38 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS06150 a0c1f53909e01c1ecdd5a0ba2cfd88d5 66 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 42 61 1.7E-6 T 16-09-2016 IPR019626 Stress-induced protein, KGG, repeat BER92_RS06150 a0c1f53909e01c1ecdd5a0ba2cfd88d5 66 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 15 36 3.9E-9 T 16-09-2016 IPR019626 Stress-induced protein, KGG, repeat BER92_RS06150 a0c1f53909e01c1ecdd5a0ba2cfd88d5 66 PANTHER PTHR36569 1 66 8.4E-28 T 16-09-2016 BER92_RS06150 a0c1f53909e01c1ecdd5a0ba2cfd88d5 66 PANTHER PTHR36569:SF2 1 66 8.4E-28 T 16-09-2016 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 Pfam PF00290 Tryptophan synthase alpha chain 8 257 2.3E-80 T 16-09-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 PANTHER PTHR10314:SF4 1 51 6.0E-27 T 16-09-2016 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 PANTHER PTHR10314:SF4 74 166 6.0E-27 T 16-09-2016 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 SUPERFAMILY SSF51366 1 244 5.02E-81 T 16-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 PANTHER PTHR10314 1 51 6.0E-27 T 16-09-2016 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 PANTHER PTHR10314 74 166 6.0E-27 T 16-09-2016 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 16-09-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 Gene3D G3DSA:3.20.20.70 1 266 3.4E-93 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 264 33.382 T 16-09-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 BER92_RS07180 f9f04eb20611d3b3ce63440c1613c33c 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 256 1.7E-67 T 16-09-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 BER92_RS08350 22ab89e3e1a0c0ccba37c49f3fe691d9 319 Gene3D G3DSA:3.40.50.150 124 303 2.6E-18 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS08350 22ab89e3e1a0c0ccba37c49f3fe691d9 319 Pfam PF13649 Methyltransferase domain 149 235 1.8E-6 T 16-09-2016 BER92_RS08350 22ab89e3e1a0c0ccba37c49f3fe691d9 319 SUPERFAMILY SSF53335 116 311 7.0E-21 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS11500 93070d2e5fb4a77b5d1406b051498eb6 345 Gene3D G3DSA:3.40.50.300 52 151 5.0E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11500 93070d2e5fb4a77b5d1406b051498eb6 345 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 30 322 3.3E-65 T 16-09-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 BER92_RS11500 93070d2e5fb4a77b5d1406b051498eb6 345 PANTHER PTHR30160:SF13 1 342 1.9E-101 T 16-09-2016 BER92_RS11500 93070d2e5fb4a77b5d1406b051498eb6 345 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 23 336 1.5E-103 T 16-09-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 BER92_RS11500 93070d2e5fb4a77b5d1406b051498eb6 345 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 7 341 37.203 T 16-09-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 BER92_RS11500 93070d2e5fb4a77b5d1406b051498eb6 345 SUPERFAMILY SSF52540 52 202 1.59E-11 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11500 93070d2e5fb4a77b5d1406b051498eb6 345 Gene3D G3DSA:3.20.20.120 250 306 3.3E-4 T 16-09-2016 IPR029065 Enolase C-terminal domain-like BER92_RS11500 93070d2e5fb4a77b5d1406b051498eb6 345 PANTHER PTHR30160 1 342 1.9E-101 T 16-09-2016 BER92_RS09685 d022b10e8d281db2efaad96d337483ae 118 SUPERFAMILY SSF55248 21 113 9.03E-31 T 16-09-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 BER92_RS09685 d022b10e8d281db2efaad96d337483ae 118 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 19 112 23.927 T 16-09-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 BER92_RS09685 d022b10e8d281db2efaad96d337483ae 118 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 21 110 4.2E-27 T 16-09-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 BER92_RS09685 d022b10e8d281db2efaad96d337483ae 118 PANTHER PTHR12599 1 114 3.1E-36 T 16-09-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 BER92_RS09685 d022b10e8d281db2efaad96d337483ae 118 Gene3D G3DSA:3.30.1360.20 18 113 1.2E-29 T 16-09-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 BER92_RS08365 c9a28a122d8a56d1360694f8af2f9997 321 PANTHER PTHR31367 1 321 1.3E-156 T 16-09-2016 BER92_RS08365 c9a28a122d8a56d1360694f8af2f9997 321 Pfam PF06189 5'-nucleotidase 39 316 9.4E-106 T 16-09-2016 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|Reactome: REACT_1698 BER92_RS08365 c9a28a122d8a56d1360694f8af2f9997 321 PANTHER PTHR31367:SF5 1 321 1.3E-156 T 16-09-2016 BER92_RS17270 decb173e5c8db1335321bda58093b847 246 PANTHER PTHR24220:SF595 12 221 3.5E-81 T 16-09-2016 BER92_RS17270 decb173e5c8db1335321bda58093b847 246 Pfam PF00005 ABC transporter 26 169 3.2E-26 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS17270 decb173e5c8db1335321bda58093b847 246 SUPERFAMILY SSF52540 9 219 3.62E-53 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17270 decb173e5c8db1335321bda58093b847 246 SMART SM00382 35 217 5.0E-13 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS17270 decb173e5c8db1335321bda58093b847 246 PANTHER PTHR24220 12 221 3.5E-81 T 16-09-2016 BER92_RS17270 decb173e5c8db1335321bda58093b847 246 Gene3D G3DSA:3.40.50.300 8 220 1.1E-58 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17270 decb173e5c8db1335321bda58093b847 246 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS12045 a4b5307b7299658e397ef5e1c70104b3 288 Pfam PF07859 alpha/beta hydrolase fold 71 168 1.3E-12 T 16-09-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 BER92_RS12045 a4b5307b7299658e397ef5e1c70104b3 288 PANTHER PTHR23024:SF175 55 286 2.2E-108 T 16-09-2016 BER92_RS12045 a4b5307b7299658e397ef5e1c70104b3 288 PANTHER PTHR23024 55 286 2.2E-108 T 16-09-2016 BER92_RS12045 a4b5307b7299658e397ef5e1c70104b3 288 SUPERFAMILY SSF53474 37 270 6.57E-44 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS12045 a4b5307b7299658e397ef5e1c70104b3 288 Gene3D G3DSA:3.40.50.1820 47 284 5.1E-52 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS06665 df3ff69f4bc0c3d998dcc6e144a9aba8 142 Gene3D G3DSA:1.20.120.10 92 142 6.1E-5 T 16-09-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 BER92_RS06665 df3ff69f4bc0c3d998dcc6e144a9aba8 142 SUPERFAMILY SSF47175 31 142 1.47E-15 T 16-09-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 BER92_RS05295 04a4ff93be1240f69a9fa49ad318f574 172 PANTHER PTHR36570:SF1 6 168 2.1E-65 T 16-09-2016 BER92_RS05295 04a4ff93be1240f69a9fa49ad318f574 172 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 4 168 22.708 T 16-09-2016 IPR022920 Disulphide bond formation protein DsbB BER92_RS05295 04a4ff93be1240f69a9fa49ad318f574 172 Pfam PF02600 Disulfide bond formation protein DsbB 10 160 2.1E-41 T 16-09-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 BER92_RS05295 04a4ff93be1240f69a9fa49ad318f574 172 PANTHER PTHR36570 6 168 2.1E-65 T 16-09-2016 BER92_RS05295 04a4ff93be1240f69a9fa49ad318f574 172 SUPERFAMILY SSF158442 12 161 1.2E-41 T 16-09-2016 BER92_RS05295 04a4ff93be1240f69a9fa49ad318f574 172 Gene3D G3DSA:1.20.1550.10 9 169 1.1E-50 T 16-09-2016 IPR023380 Disulphide bond formation protein DsbB-like domain BER92_RS00535 f4446fbf173193d25db19c5fec6112f1 362 Pfam PF00676 Dehydrogenase E1 component 41 329 4.4E-68 T 16-09-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 BER92_RS00535 f4446fbf173193d25db19c5fec6112f1 362 PANTHER PTHR11516:SF1 8 362 1.1E-123 T 16-09-2016 BER92_RS00535 f4446fbf173193d25db19c5fec6112f1 362 SUPERFAMILY SSF52518 22 357 2.86E-87 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS00535 f4446fbf173193d25db19c5fec6112f1 362 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 11 353 7.0E-129 T 16-09-2016 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 BER92_RS00535 f4446fbf173193d25db19c5fec6112f1 362 PANTHER PTHR11516 8 362 1.1E-123 T 16-09-2016 BER92_RS00535 f4446fbf173193d25db19c5fec6112f1 362 Gene3D G3DSA:3.40.50.970 6 353 2.4E-112 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS00865 cee9ac0952fd4108d6b4dd17f5621891 388 PANTHER PTHR35861 1 387 1.5E-133 T 16-09-2016 BER92_RS00865 cee9ac0952fd4108d6b4dd17f5621891 388 Pfam PF04984 Phage tail sheath protein 95 373 3.3E-40 T 16-09-2016 IPR007067 Tail sheath protein BER92_RS00865 cee9ac0952fd4108d6b4dd17f5621891 388 Pfam PF04984 Phage tail sheath protein 1 110 2.5E-10 T 16-09-2016 IPR007067 Tail sheath protein BER92_RS00865 cee9ac0952fd4108d6b4dd17f5621891 388 PANTHER PTHR35861:SF1 1 387 1.5E-133 T 16-09-2016 BER92_RS10170 e66342d63b0cc845247ca95f67de650f 106 PANTHER PTHR33473 1 106 4.0E-42 T 16-09-2016 BER92_RS10170 e66342d63b0cc845247ca95f67de650f 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 4 101 28.609 T 16-09-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS BER92_RS10170 e66342d63b0cc845247ca95f67de650f 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 24 102 8.1E-34 T 16-09-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 BER92_RS10170 e66342d63b0cc845247ca95f67de650f 106 SUPERFAMILY SSF54736 21 105 3.19E-32 T 16-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BER92_RS10170 e66342d63b0cc845247ca95f67de650f 106 Gene3D G3DSA:3.30.1390.10 9 106 1.2E-43 T 16-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BER92_RS09550 4ca0e1586d014b9d99f9d3d30127f5ce 102 Gene3D G3DSA:3.30.750.24 3 91 7.2E-9 T 16-09-2016 IPR002645 STAS domain BER92_RS09550 4ca0e1586d014b9d99f9d3d30127f5ce 102 SUPERFAMILY SSF52091 3 88 5.89E-11 T 16-09-2016 IPR002645 STAS domain BER92_RS09550 4ca0e1586d014b9d99f9d3d30127f5ce 102 Pfam PF13466 STAS domain 4 82 5.3E-12 T 16-09-2016 IPR002645 STAS domain BER92_RS08540 00f0d9a9f2e2d7494f0fc344a82a52c5 188 PANTHER PTHR38664 2 165 6.9E-40 T 16-09-2016 BER92_RS08540 00f0d9a9f2e2d7494f0fc344a82a52c5 188 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 28 144 2.2E-46 T 16-09-2016 IPR008769 Poly granule associated BER92_RS08540 00f0d9a9f2e2d7494f0fc344a82a52c5 188 PANTHER PTHR38664:SF1 2 165 6.9E-40 T 16-09-2016 BER92_RS08540 00f0d9a9f2e2d7494f0fc344a82a52c5 188 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 20 142 4.2E-40 T 16-09-2016 IPR008769 Poly granule associated BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 Pfam PF07664 Ferrous iron transport protein B C terminus 398 450 1.8E-14 T 16-09-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 Pfam PF07670 Nucleoside recognition 288 380 6.5E-13 T 16-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 Pfam PF07670 Nucleoside recognition 455 588 4.0E-25 T 16-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 PANTHER PTHR11649:SF37 8 156 2.8E-247 T 16-09-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 Gene3D G3DSA:3.40.50.300 8 173 1.9E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 SUPERFAMILY SSF52540 7 172 6.79E-34 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 31 49 3.3E-5 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 10 30 3.3E-5 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 PANTHER PTHR11649 202 616 2.8E-247 T 16-09-2016 BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 PANTHER PTHR11649 8 156 2.8E-247 T 16-09-2016 BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 PANTHER PTHR11649:SF37 202 616 2.8E-247 T 16-09-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 BER92_RS09335 8cd8524e193e839ba0d28ebcc3a613b2 619 Pfam PF02421 Ferrous iron transport protein B 9 167 5.1E-52 T 16-09-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 16-09-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 16-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 16-09-2016 IPR025944 Sigma-54 interaction domain, conserved site BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 Pfam PF00158 Sigma-54 interaction domain 140 305 2.4E-66 T 16-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 Gene3D G3DSA:1.10.10.60 408 462 3.0E-16 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 Gene3D G3DSA:3.40.50.2300 3 125 4.4E-34 T 16-09-2016 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 PANTHER PTHR32071 7 462 2.4E-296 T 16-09-2016 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 442 3.0E-10 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 442 462 3.0E-10 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 SUPERFAMILY SSF52540 140 381 1.82E-66 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 Gene3D G3DSA:3.40.50.300 136 311 1.3E-58 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 SMART SM00448 5 116 3.2E-34 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 Pfam PF00072 Response regulator receiver domain 8 115 4.7E-29 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 SUPERFAMILY SSF46689 353 461 2.33E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 Pfam PF02954 Bacterial regulatory protein, Fis family 419 459 2.2E-14 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 Gene3D G3DSA:1.10.8.60 312 383 1.5E-21 T 16-09-2016 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 PANTHER PTHR32071:SF28 7 462 2.4E-296 T 16-09-2016 BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 SUPERFAMILY SSF52172 4 182 2.56E-42 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS03925 1da3c033319d7454a8928df1b3ab6459 462 SMART SM00382 159 302 5.5E-8 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS10045 19f23271ebe313eb24706b11ebf4beac 256 Pfam PF06884 Protein of unknown function (DUF1264) 54 222 1.3E-61 T 16-09-2016 IPR010686 Protein of unknown function DUF1264 BER92_RS10045 19f23271ebe313eb24706b11ebf4beac 256 PANTHER PTHR31360:SF3 15 230 8.4E-140 T 16-09-2016 BER92_RS10045 19f23271ebe313eb24706b11ebf4beac 256 PANTHER PTHR31360 15 230 8.4E-140 T 16-09-2016 BER92_RS06270 036d501277394f50760c790e85c46ee2 322 Pfam PF01609 Transposase DDE domain 135 310 4.5E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06270 036d501277394f50760c790e85c46ee2 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.4E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS06270 036d501277394f50760c790e85c46ee2 322 PANTHER PTHR35604:SF2 2 322 1.4E-241 T 16-09-2016 BER92_RS06270 036d501277394f50760c790e85c46ee2 322 PANTHER PTHR35604 2 322 1.4E-241 T 16-09-2016 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 47 62 - T 16-09-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 PANTHER PTHR11958 15 444 3.7E-254 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 Pfam PF00375 Sodium:dicarboxylate symporter family 20 412 1.1E-109 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 16-09-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 PANTHER PTHR11958:SF49 15 444 3.7E-254 T 16-09-2016 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 Gene3D G3DSA:1.10.3860.10 17 417 1.8E-117 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 13 438 37.964 T 16-09-2016 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 SUPERFAMILY SSF118215 20 413 8.63E-118 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 156 178 2.1E-27 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 2.1E-27 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 2.1E-27 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 18 38 2.1E-27 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 2.1E-27 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS03235 a1822bff5cff77799b5b7de0fad82cc2 448 PRINTS PR00173 Glutamate-aspartate symporter signature 85 110 2.1E-27 T 16-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 Gene3D G3DSA:2.40.110.10 241 350 5.5E-14 T 16-09-2016 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 364 509 4.8E-17 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 Pfam PF09317 Domain of unknown function (DUF1974) 518 801 1.2E-106 T 16-09-2016 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.-|UniPathway: UPA00659 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 138 236 5.6E-16 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 SUPERFAMILY SSF56645 123 359 5.5E-41 T 16-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 Gene3D G3DSA:1.10.540.10 101 236 4.8E-31 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 Gene3D G3DSA:1.20.140.10 351 511 4.9E-28 T 16-09-2016 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 SUPERFAMILY SSF47203 364 510 2.74E-25 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 PANTHER PTHR10909 53 535 3.5E-273 T 16-09-2016 BER92_RS05725 f8578db1cb4f00e093dbef08288f92c5 824 PANTHER PTHR10909:SF321 53 535 3.5E-273 T 16-09-2016 BER92_RS14520 c09d848c6f36c1b198a72b970897a018 795 Gene3D G3DSA:2.40.170.20 175 795 8.5E-93 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS14520 c09d848c6f36c1b198a72b970897a018 795 Pfam PF00593 TonB dependent receptor 485 793 3.8E-28 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS14520 c09d848c6f36c1b198a72b970897a018 795 PANTHER PTHR30069 28 794 1.3E-114 T 16-09-2016 BER92_RS14520 c09d848c6f36c1b198a72b970897a018 795 PANTHER PTHR30069:SF4 28 794 1.3E-114 T 16-09-2016 BER92_RS14520 c09d848c6f36c1b198a72b970897a018 795 SUPERFAMILY SSF56935 37 791 6.59E-107 T 16-09-2016 BER92_RS14520 c09d848c6f36c1b198a72b970897a018 795 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 44 - T 16-09-2016 IPR010916 TonB box, conserved site BER92_RS14520 c09d848c6f36c1b198a72b970897a018 795 Gene3D G3DSA:2.170.130.10 51 174 3.4E-31 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS14520 c09d848c6f36c1b198a72b970897a018 795 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 172 2.8E-20 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 Gene3D G3DSA:3.30.420.150 139 312 1.1E-49 T 16-09-2016 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 SUPERFAMILY SSF53067 140 312 8.6E-44 T 16-09-2016 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 PANTHER PTHR30005:SF4 1 499 6.7E-211 T 16-09-2016 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 SUPERFAMILY SSF109604 317 494 6.28E-46 T 16-09-2016 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 PANTHER PTHR30005 1 499 6.7E-211 T 16-09-2016 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 15 310 5.6E-99 T 16-09-2016 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 Pfam PF02541 Ppx/GppA phosphatase family 28 311 2.6E-65 T 16-09-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 SUPERFAMILY SSF53067 15 135 4.46E-32 T 16-09-2016 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 PIRSF PIRSF001267 5 506 2.5E-198 T 16-09-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40|UniPathway: UPA00908 BER92_RS15320 23d6d5c2b43e9f380429ccd8239e59a9 506 Gene3D G3DSA:3.30.420.40 12 133 4.4E-39 T 16-09-2016 BER92_RS04370 a09ff7a1118eda81c426562b03a2b1e1 169 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 21 156 2.7E-14 T 16-09-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 BER92_RS04370 a09ff7a1118eda81c426562b03a2b1e1 169 Pfam PF12019 Type II transport protein GspH 63 153 3.9E-6 T 16-09-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 BER92_RS04370 a09ff7a1118eda81c426562b03a2b1e1 169 SUPERFAMILY SSF54523 26 148 1.96E-9 T 16-09-2016 BER92_RS15510 ecc29e58f4295845c6544e3c45334045 157 SUPERFAMILY SSF102220 119 149 8.37E-5 T 16-09-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS15510 ecc29e58f4295845c6544e3c45334045 157 Gene3D G3DSA:3.40.50.10220 113 150 1.0E-4 T 16-09-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 SUPERFAMILY SSF48452 29 199 1.63E-28 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 SMART SM00028 237 270 39.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 SMART SM00028 168 201 4.7 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 SMART SM00028 134 167 52.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 SMART SM00028 66 99 150.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 SMART SM00028 32 65 0.66 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 SMART SM00028 100 133 27.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 SUPERFAMILY SSF48452 165 370 9.48E-20 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 PANTHER PTHR23083 1 301 2.7E-102 T 16-09-2016 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 PANTHER PTHR23083:SF403 1 301 2.7E-102 T 16-09-2016 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 Gene3D G3DSA:1.25.40.10 11 224 2.0E-35 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 Gene3D G3DSA:1.25.40.10 244 431 3.7E-11 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 Pfam PF13432 Tetratricopeptide repeat 145 199 1.5E-5 T 16-09-2016 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 Pfam PF13432 Tetratricopeptide repeat 38 97 3.6E-6 T 16-09-2016 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 Pfam PF13432 Tetratricopeptide repeat 209 270 2.8E-6 T 16-09-2016 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 PANTHER PTHR23083 334 496 2.7E-102 T 16-09-2016 BER92_RS18635 4e21bf3b428bd9612f6063975d7cf241 690 PANTHER PTHR23083:SF403 334 496 2.7E-102 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 Pfam PF07676 WD40-like Beta Propeller Repeat 38 61 0.014 T 16-09-2016 IPR011659 WD40-like Beta Propeller BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 Pfam PF07676 WD40-like Beta Propeller Repeat 83 114 1.0E-4 T 16-09-2016 IPR011659 WD40-like Beta Propeller BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 Pfam PF07676 WD40-like Beta Propeller Repeat 138 148 0.23 T 16-09-2016 IPR011659 WD40-like Beta Propeller BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 Pfam PF07676 WD40-like Beta Propeller Repeat 299 318 0.062 T 16-09-2016 IPR011659 WD40-like Beta Propeller BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 SUPERFAMILY SSF82171 34 147 5.1E-37 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 SUPERFAMILY SSF82171 183 195 5.1E-37 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 SUPERFAMILY SSF82171 222 441 5.1E-37 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 Gene3D G3DSA:3.40.50.1820 449 710 2.6E-68 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 SUPERFAMILY SSF53474 449 709 1.54E-66 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 PANTHER PTHR11731 277 710 0.0 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 PANTHER PTHR11731 25 254 0.0 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 Gene3D G3DSA:2.120.10.60 28 149 1.5E-53 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 Gene3D G3DSA:2.120.10.60 191 391 1.5E-53 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 PANTHER PTHR11731:SF129 277 710 0.0 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 PANTHER PTHR11731:SF129 25 254 0.0 T 16-09-2016 BER92_RS14185 7d6a91e26be56d439f89b45784d0820b 711 Pfam PF00326 Prolyl oligopeptidase family 496 710 6.4E-55 T 16-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BER92_RS16730 21abe8cc0e517ade314a4c4549371f96 242 PANTHER PTHR23293 17 241 3.7E-95 T 16-09-2016 BER92_RS16730 21abe8cc0e517ade314a4c4549371f96 242 PANTHER PTHR23293:SF5 17 241 3.7E-95 T 16-09-2016 BER92_RS16730 21abe8cc0e517ade314a4c4549371f96 242 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 18 239 9.2E-88 T 16-09-2016 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 BER92_RS16730 21abe8cc0e517ade314a4c4549371f96 242 PIRSF PIRSF000857 4 242 1.1E-59 T 16-09-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 BER92_RS16730 21abe8cc0e517ade314a4c4549371f96 242 Gene3D G3DSA:3.40.50.620 13 213 6.0E-64 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS16730 21abe8cc0e517ade314a4c4549371f96 242 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 7 240 40.877 T 16-09-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 BER92_RS16730 21abe8cc0e517ade314a4c4549371f96 242 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 46 216 1.1E-53 T 16-09-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 BER92_RS16730 21abe8cc0e517ade314a4c4549371f96 242 SUPERFAMILY SSF52402 18 205 6.77E-57 T 16-09-2016 BER92_RS16730 21abe8cc0e517ade314a4c4549371f96 242 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 30 240 5.9E-82 T 16-09-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 SUPERFAMILY SSF51161 32 316 7.64E-77 T 16-09-2016 IPR011004 Trimeric LpxA-like BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 Gene3D G3DSA:2.160.10.10 210 322 1.1E-20 T 16-09-2016 BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 8 325 36.286 T 16-09-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 328 1.9E-125 T 16-09-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 PANTHER PTHR22572 97 294 3.0E-54 T 16-09-2016 BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 Gene3D G3DSA:2.160.10.10 100 209 6.8E-24 T 16-09-2016 BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 PANTHER PTHR22572:SF117 97 294 3.0E-54 T 16-09-2016 BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 221 256 7.3E-6 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 102 136 1.4E-5 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 139 178 1.6E-4 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS06385 934e7c76c630734b90450ce6ab977cad 337 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 23 88 3.3E-23 T 16-09-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 BER92_RS14605 88ec7913c7c9e4f1bad83f675e33727e 460 PIRSF PIRSF006060 4 456 2.2E-63 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS14605 88ec7913c7c9e4f1bad83f675e33727e 460 PANTHER PTHR11785:SF197 3 457 2.5E-242 T 16-09-2016 BER92_RS14605 88ec7913c7c9e4f1bad83f675e33727e 460 Pfam PF13520 Amino acid permease 36 416 1.8E-34 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS14605 88ec7913c7c9e4f1bad83f675e33727e 460 PANTHER PTHR11785 3 457 2.5E-242 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS12405 d30bdc8de09a827e9f9f42fe12a8a1bc 531 SUPERFAMILY SSF51905 387 413 4.88E-51 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12405 d30bdc8de09a827e9f9f42fe12a8a1bc 531 SUPERFAMILY SSF51905 1 352 4.88E-51 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12405 d30bdc8de09a827e9f9f42fe12a8a1bc 531 Gene3D G3DSA:3.50.50.60 221 320 7.4E-36 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12405 d30bdc8de09a827e9f9f42fe12a8a1bc 531 Gene3D G3DSA:3.50.50.60 7 90 7.4E-36 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12405 d30bdc8de09a827e9f9f42fe12a8a1bc 531 PANTHER PTHR10668:SF83 1 530 7.9E-196 T 16-09-2016 BER92_RS12405 d30bdc8de09a827e9f9f42fe12a8a1bc 531 PANTHER PTHR10668 1 530 7.9E-196 T 16-09-2016 BER92_RS12405 d30bdc8de09a827e9f9f42fe12a8a1bc 531 Pfam PF01593 Flavin containing amine oxidoreductase 19 324 2.0E-14 T 16-09-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 SUPERFAMILY SSF55060 172 289 1.29E-25 T 16-09-2016 IPR013750 GHMP kinase, C-terminal domain BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 Gene3D G3DSA:3.30.70.890 172 290 2.4E-32 T 16-09-2016 IPR013750 GHMP kinase, C-terminal domain BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 SUPERFAMILY SSF54211 17 169 2.13E-42 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 PANTHER PTHR20861:SF2 13 286 2.4E-82 T 16-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 Gene3D G3DSA:3.30.230.10 17 170 6.7E-52 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 PANTHER PTHR20861 13 286 2.4E-82 T 16-09-2016 BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 PIRSF PIRSF010376 13 291 1.6E-82 T 16-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 16 287 1.8E-69 T 16-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 Pfam PF00288 GHMP kinases N terminal domain 98 155 8.6E-9 T 16-09-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 15 283 31.443 T 16-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS05045 f908b7bd37628c84a40aec19dc0ca407 295 Pfam PF08544 GHMP kinases C terminal 212 271 2.3E-6 T 16-09-2016 IPR013750 GHMP kinase, C-terminal domain BER92_RS02095 02f8531b95aadd98a7209957e4955c2c 198 SUPERFAMILY SSF56935 22 197 1.47E-8 T 16-09-2016 BER92_RS02095 02f8531b95aadd98a7209957e4955c2c 198 TIGRFAM TIGR04273 Y_sulf_Ax21: sulfation-dependent quorum factor, Ax21 family 6 198 1.7E-95 T 16-09-2016 IPR026364 Ax21 family BER92_RS02095 02f8531b95aadd98a7209957e4955c2c 198 Gene3D G3DSA:2.40.160.10 24 197 2.9E-10 T 16-09-2016 IPR023614 Porin domain BER92_RS11065 8610605ad410b639e12f13c9a5613f41 190 Gene3D G3DSA:2.40.170.20 17 184 4.4E-29 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS11065 8610605ad410b639e12f13c9a5613f41 190 Pfam PF00593 TonB dependent receptor 25 184 2.1E-13 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS11065 8610605ad410b639e12f13c9a5613f41 190 PANTHER PTHR32552 16 190 6.5E-60 T 16-09-2016 BER92_RS11065 8610605ad410b639e12f13c9a5613f41 190 SUPERFAMILY SSF56935 19 186 9.16E-25 T 16-09-2016 BER92_RS11065 8610605ad410b639e12f13c9a5613f41 190 PANTHER PTHR32552:SF33 16 190 6.5E-60 T 16-09-2016 BER92_RS07330 01e3b553156cb47e6e93eda08992931b 130 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 10 97 1.0E-43 T 16-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 BER92_RS07330 01e3b553156cb47e6e93eda08992931b 130 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 7 114 6.7E-30 T 16-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 BER92_RS07330 01e3b553156cb47e6e93eda08992931b 130 PANTHER PTHR33515 4 130 1.3E-41 T 16-09-2016 BER92_RS07330 01e3b553156cb47e6e93eda08992931b 130 ProSitePatterns PS01319 Ribosome-binding factor A signature. 76 97 - T 16-09-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 BER92_RS07330 01e3b553156cb47e6e93eda08992931b 130 SUPERFAMILY SSF89919 5 113 6.8E-30 T 16-09-2016 IPR023799 Ribosome-binding factor A domain BER92_RS07330 01e3b553156cb47e6e93eda08992931b 130 Pfam PF02033 Ribosome-binding factor A 8 110 8.8E-29 T 16-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 BER92_RS07330 01e3b553156cb47e6e93eda08992931b 130 Gene3D G3DSA:3.30.300.20 5 116 7.3E-37 T 16-09-2016 IPR015946 K homology domain-like, alpha/beta BER92_RS07330 01e3b553156cb47e6e93eda08992931b 130 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 4 117 21.168 T 16-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 BER92_RS19020 bfc67df6db31cc67f6c3d27fbda44406 59 Gene3D G3DSA:3.30.420.10 9 59 7.3E-4 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS19020 bfc67df6db31cc67f6c3d27fbda44406 59 Pfam PF13333 Integrase core domain 24 59 1.2E-4 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS17035 9df3f0865c94e0d2b928f1263d2dcdbe 545 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 8 540 1.9E-121 T 16-09-2016 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 BER92_RS17035 9df3f0865c94e0d2b928f1263d2dcdbe 545 PRINTS PR01084 Na+/H+ exchanger signature 119 129 4.2E-5 T 16-09-2016 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: REACT_15518 BER92_RS17035 9df3f0865c94e0d2b928f1263d2dcdbe 545 PRINTS PR01084 Na+/H+ exchanger signature 69 83 4.2E-5 T 16-09-2016 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: REACT_15518 BER92_RS17035 9df3f0865c94e0d2b928f1263d2dcdbe 545 PRINTS PR01084 Na+/H+ exchanger signature 55 66 4.2E-5 T 16-09-2016 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: REACT_15518 BER92_RS17035 9df3f0865c94e0d2b928f1263d2dcdbe 545 PANTHER PTHR10110 1 544 3.1E-219 T 16-09-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 BER92_RS17035 9df3f0865c94e0d2b928f1263d2dcdbe 545 PANTHER PTHR10110:SF120 1 544 3.1E-219 T 16-09-2016 BER92_RS17035 9df3f0865c94e0d2b928f1263d2dcdbe 545 Pfam PF00999 Sodium/hydrogen exchanger family 11 419 2.1E-65 T 16-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BER92_RS00745 2bed9341ec0729a11fc6e47404b3e1c9 270 Pfam PF13503 Domain of unknown function (DUF4123) 2 120 1.3E-9 T 16-09-2016 IPR025391 Domain of unknown function DUF4123 BER92_RS08235 fa8340beb213ad751207d569b3620750 236 PIRSF PIRSF003107 6 222 2.0E-57 T 16-09-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 BER92_RS08235 fa8340beb213ad751207d569b3620750 236 Pfam PF01895 PhoU domain 127 210 5.4E-17 T 16-09-2016 IPR026022 PhoU domain BER92_RS08235 fa8340beb213ad751207d569b3620750 236 Pfam PF01895 PhoU domain 24 110 5.8E-19 T 16-09-2016 IPR026022 PhoU domain BER92_RS08235 fa8340beb213ad751207d569b3620750 236 Gene3D G3DSA:1.20.58.220 126 220 2.9E-30 T 16-09-2016 BER92_RS08235 fa8340beb213ad751207d569b3620750 236 SUPERFAMILY SSF109755 11 229 1.36E-64 T 16-09-2016 BER92_RS08235 fa8340beb213ad751207d569b3620750 236 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 11 219 9.2E-60 T 16-09-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 BER92_RS08235 fa8340beb213ad751207d569b3620750 236 PANTHER PTHR10010:SF14 5 228 5.3E-72 T 16-09-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 BER92_RS08235 fa8340beb213ad751207d569b3620750 236 PANTHER PTHR10010 5 228 5.3E-72 T 16-09-2016 BER92_RS08235 fa8340beb213ad751207d569b3620750 236 Gene3D G3DSA:1.20.58.220 6 114 2.4E-27 T 16-09-2016 BER92_RS09210 eb5ca2648bf788ad7deb420d828684ed 363 PANTHER PTHR11751:SF354 31 360 3.3E-82 T 16-09-2016 BER92_RS09210 eb5ca2648bf788ad7deb420d828684ed 363 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 11 356 4.2E-107 T 16-09-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 BER92_RS09210 eb5ca2648bf788ad7deb420d828684ed 363 PANTHER PTHR11751 31 360 3.3E-82 T 16-09-2016 BER92_RS09210 eb5ca2648bf788ad7deb420d828684ed 363 Pfam PF00155 Aminotransferase class I and II 49 352 5.8E-51 T 16-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BER92_RS09210 eb5ca2648bf788ad7deb420d828684ed 363 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 9 359 52.411 T 16-09-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 BER92_RS09210 eb5ca2648bf788ad7deb420d828684ed 363 Gene3D G3DSA:3.40.640.10 49 259 6.2E-64 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS09210 eb5ca2648bf788ad7deb420d828684ed 363 Gene3D G3DSA:3.90.1150.10 260 356 1.1E-21 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS09210 eb5ca2648bf788ad7deb420d828684ed 363 SUPERFAMILY SSF53383 28 356 8.82E-70 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS18650 b6fcdbcafef1af4015352f3976530f29 267 Pfam PF01553 Acyltransferase 88 199 3.7E-21 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS18650 b6fcdbcafef1af4015352f3976530f29 267 PANTHER PTHR10434 226 267 9.7E-91 T 16-09-2016 BER92_RS18650 b6fcdbcafef1af4015352f3976530f29 267 PANTHER PTHR10434 17 206 9.7E-91 T 16-09-2016 BER92_RS18650 b6fcdbcafef1af4015352f3976530f29 267 SMART SM00563 90 202 4.9E-27 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS18650 b6fcdbcafef1af4015352f3976530f29 267 Gene3D G3DSA:3.40.1130.10 88 199 3.1E-8 T 16-09-2016 BER92_RS18650 b6fcdbcafef1af4015352f3976530f29 267 PANTHER PTHR10434:SF8 226 267 9.7E-91 T 16-09-2016 BER92_RS18650 b6fcdbcafef1af4015352f3976530f29 267 PANTHER PTHR10434:SF8 17 206 9.7E-91 T 16-09-2016 BER92_RS18650 b6fcdbcafef1af4015352f3976530f29 267 SUPERFAMILY SSF69593 18 211 4.18E-22 T 16-09-2016 BER92_RS18290 a3721e38e07eb74d535c65d8b50b6ed8 198 SUPERFAMILY SSF110111 64 179 7.72E-46 T 16-09-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain BER92_RS18290 a3721e38e07eb74d535c65d8b50b6ed8 198 PANTHER PTHR21320 14 177 8.2E-46 T 16-09-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 BER92_RS18290 a3721e38e07eb74d535c65d8b50b6ed8 198 PANTHER PTHR21320:SF3 14 177 8.2E-46 T 16-09-2016 BER92_RS18290 a3721e38e07eb74d535c65d8b50b6ed8 198 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 31 177 1.2E-46 T 16-09-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 BER92_RS18290 a3721e38e07eb74d535c65d8b50b6ed8 198 Gene3D G3DSA:2.60.370.10 64 180 7.9E-48 T 16-09-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain BER92_RS18290 a3721e38e07eb74d535c65d8b50b6ed8 198 PIRSF PIRSF005413 5 194 8.9E-61 T 16-09-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 BER92_RS13445 ae4109cb0b92d31f5eb927b65fc82d75 376 PANTHER PTHR30486:SF3 1 376 3.7E-175 T 16-09-2016 BER92_RS13445 ae4109cb0b92d31f5eb927b65fc82d75 376 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 7 347 6.9E-135 T 16-09-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 BER92_RS13445 ae4109cb0b92d31f5eb927b65fc82d75 376 PANTHER PTHR30486 1 376 3.7E-175 T 16-09-2016 BER92_RS13445 ae4109cb0b92d31f5eb927b65fc82d75 376 Gene3D G3DSA:3.40.50.300 105 347 7.8E-63 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13445 ae4109cb0b92d31f5eb927b65fc82d75 376 Pfam PF00437 Type II/IV secretion system protein 12 252 1.8E-34 T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS13445 ae4109cb0b92d31f5eb927b65fc82d75 376 SUPERFAMILY SSF52540 8 341 1.66E-68 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02255 c6a51d7239c4709119a2687ac31843fb 402 PANTHER PTHR13693 15 400 3.1E-253 T 16-09-2016 BER92_RS02255 c6a51d7239c4709119a2687ac31843fb 402 Pfam PF00155 Aminotransferase class I and II 46 389 1.2E-64 T 16-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BER92_RS02255 c6a51d7239c4709119a2687ac31843fb 402 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 5 398 53.047 T 16-09-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 BER92_RS02255 c6a51d7239c4709119a2687ac31843fb 402 Gene3D G3DSA:3.40.640.10 61 281 1.9E-90 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS02255 c6a51d7239c4709119a2687ac31843fb 402 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 8 400 7.9E-224 T 16-09-2016 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|UniPathway: UPA00046 BER92_RS02255 c6a51d7239c4709119a2687ac31843fb 402 SUPERFAMILY SSF53383 10 399 8.68E-118 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS02255 c6a51d7239c4709119a2687ac31843fb 402 PANTHER PTHR13693:SF60 15 400 3.1E-253 T 16-09-2016 BER92_RS02255 c6a51d7239c4709119a2687ac31843fb 402 Gene3D G3DSA:3.90.1150.10 282 396 6.4E-33 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS04190 af6957fdcf9a250d3354ffe931234e19 395 SUPERFAMILY SSF52738 222 393 5.23E-21 T 16-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS04190 af6957fdcf9a250d3354ffe931234e19 395 Gene3D G3DSA:3.40.50.180 222 366 3.5E-14 T 16-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS04190 af6957fdcf9a250d3354ffe931234e19 395 Pfam PF01339 CheB methylesterase 226 366 1.0E-10 T 16-09-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BER92_RS13510 16cca64c4968cfc1d7abf3cc861cf7d4 414 PANTHER PTHR11601 16 413 2.2E-173 T 16-09-2016 BER92_RS13510 16cca64c4968cfc1d7abf3cc861cf7d4 414 Gene3D G3DSA:3.40.640.10 46 292 7.8E-84 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS13510 16cca64c4968cfc1d7abf3cc861cf7d4 414 SUPERFAMILY SSF53383 13 409 1.04E-121 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS13510 16cca64c4968cfc1d7abf3cc861cf7d4 414 Pfam PF00266 Aminotransferase class-V 34 402 1.7E-144 T 16-09-2016 IPR000192 Aminotransferase class V domain BER92_RS13510 16cca64c4968cfc1d7abf3cc861cf7d4 414 Gene3D G3DSA:3.90.1150.10 293 407 1.2E-28 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS13510 16cca64c4968cfc1d7abf3cc861cf7d4 414 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 225 244 - T 16-09-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BER92_RS13510 16cca64c4968cfc1d7abf3cc861cf7d4 414 PANTHER PTHR11601:SF17 16 413 2.2E-173 T 16-09-2016 BER92_RS13510 16cca64c4968cfc1d7abf3cc861cf7d4 414 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 16 413 5.4E-172 T 16-09-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 BER92_RS13510 16cca64c4968cfc1d7abf3cc861cf7d4 414 PIRSF PIRSF005572 31 413 2.5E-49 T 16-09-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 BER92_RS05515 2b8fe6c72194eeabe16b9f43d5aaf544 567 PANTHER PTHR37937 2 566 1.0E-155 T 16-09-2016 BER92_RS05515 2b8fe6c72194eeabe16b9f43d5aaf544 567 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 105 557 1.4E-111 T 16-09-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 BER92_RS05515 2b8fe6c72194eeabe16b9f43d5aaf544 567 PANTHER PTHR37937:SF1 2 566 1.0E-155 T 16-09-2016 BER92_RS05515 2b8fe6c72194eeabe16b9f43d5aaf544 567 SUPERFAMILY SSF52540 84 550 9.03E-63 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05515 2b8fe6c72194eeabe16b9f43d5aaf544 567 Gene3D G3DSA:3.40.50.300 91 201 1.4E-56 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05515 2b8fe6c72194eeabe16b9f43d5aaf544 567 Gene3D G3DSA:3.40.50.300 347 545 1.4E-56 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11700 631c789a00519a0c15d201c898384283 204 Pfam PF01066 CDP-alcohol phosphatidyltransferase 13 83 5.4E-13 T 16-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BER92_RS11700 631c789a00519a0c15d201c898384283 204 PANTHER PTHR15362 3 147 1.5E-40 T 16-09-2016 BER92_RS11700 631c789a00519a0c15d201c898384283 204 PANTHER PTHR15362:SF2 3 147 1.5E-40 T 16-09-2016 BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 Gene3D G3DSA:3.40.50.20 1 129 6.2E-51 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 SMART SM00878 336 441 1.3E-68 T 16-09-2016 IPR005482 Biotin carboxylase, C-terminal BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 7.6E-41 T 16-09-2016 IPR005482 Biotin carboxylase, C-terminal BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 SUPERFAMILY SSF51246 331 444 7.32E-45 T 16-09-2016 IPR011054 Rudiment single hybrid motif BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 8.6E-233 T 16-09-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 SUPERFAMILY SSF56059 83 344 9.02E-68 T 16-09-2016 BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 PANTHER PTHR18866 1 447 3.3E-296 T 16-09-2016 BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 Gene3D G3DSA:3.30.1490.20 130 203 1.9E-29 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 7.3E-83 T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 SUPERFAMILY SSF52440 1 113 4.96E-47 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 3.0E-44 T 16-09-2016 IPR005481 Biotin carboxylase-like, N-terminal domain BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 Gene3D G3DSA:3.30.470.20 204 444 9.7E-100 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS16270 e1064e55f869b50cb716408d0acabd6b 455 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 16-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BER92_RS17730 fe928930c327a10d6fc559f2a9e14f89 286 Gene3D G3DSA:3.30.200.20 17 125 2.2E-9 T 16-09-2016 BER92_RS17730 fe928930c327a10d6fc559f2a9e14f89 286 Pfam PF01163 RIO1 family 31 219 1.2E-34 T 16-09-2016 BER92_RS17730 fe928930c327a10d6fc559f2a9e14f89 286 SMART SM00090 2 226 1.8E-9 T 16-09-2016 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 BER92_RS17730 fe928930c327a10d6fc559f2a9e14f89 286 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 16-09-2016 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 BER92_RS17730 fe928930c327a10d6fc559f2a9e14f89 286 SUPERFAMILY SSF56112 18 196 3.99E-19 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS17730 fe928930c327a10d6fc559f2a9e14f89 286 Gene3D G3DSA:1.10.510.10 140 215 1.4E-17 T 16-09-2016 BER92_RS17730 fe928930c327a10d6fc559f2a9e14f89 286 PANTHER PTHR10593:SF19 7 274 3.0E-116 T 16-09-2016 BER92_RS17730 fe928930c327a10d6fc559f2a9e14f89 286 PANTHER PTHR10593 7 274 3.0E-116 T 16-09-2016 BER92_RS18100 69a865928a7159ece4a9c5edae3479e7 300 PANTHER PTHR10366 16 241 3.1E-87 T 16-09-2016 BER92_RS18100 69a865928a7159ece4a9c5edae3479e7 300 PANTHER PTHR10366 258 287 3.1E-87 T 16-09-2016 BER92_RS18100 69a865928a7159ece4a9c5edae3479e7 300 PANTHER PTHR10366:SF472 258 287 3.1E-87 T 16-09-2016 BER92_RS18100 69a865928a7159ece4a9c5edae3479e7 300 Gene3D G3DSA:3.40.50.720 8 224 1.1E-24 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18100 69a865928a7159ece4a9c5edae3479e7 300 PANTHER PTHR10366:SF472 16 241 3.1E-87 T 16-09-2016 BER92_RS18100 69a865928a7159ece4a9c5edae3479e7 300 Pfam PF01370 NAD dependent epimerase/dehydratase family 17 73 5.3E-5 T 16-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 BER92_RS18100 69a865928a7159ece4a9c5edae3479e7 300 Pfam PF01370 NAD dependent epimerase/dehydratase family 127 211 8.3E-6 T 16-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 BER92_RS18100 69a865928a7159ece4a9c5edae3479e7 300 SUPERFAMILY SSF51735 16 287 2.5E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15000 81e4ecfe7f3edbb8834ef037c361f25f 246 PANTHER PTHR34108 33 246 8.1E-62 T 16-09-2016 BER92_RS15000 81e4ecfe7f3edbb8834ef037c361f25f 246 Gene3D G3DSA:2.160.20.70 129 245 2.6E-36 T 16-09-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 BER92_RS15000 81e4ecfe7f3edbb8834ef037c361f25f 246 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 144 242 4.0E-30 T 16-09-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 BER92_RS15000 81e4ecfe7f3edbb8834ef037c361f25f 246 SUPERFAMILY SSF63848 142 245 1.18E-29 T 16-09-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 BER92_RS15000 81e4ecfe7f3edbb8834ef037c361f25f 246 PANTHER PTHR34108:SF1 33 246 8.1E-62 T 16-09-2016 BER92_RS15000 81e4ecfe7f3edbb8834ef037c361f25f 246 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 12 245 2.3E-68 T 16-09-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 BER92_RS15000 81e4ecfe7f3edbb8834ef037c361f25f 246 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 8 111 9.3E-19 T 16-09-2016 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 BER92_RS15000 81e4ecfe7f3edbb8834ef037c361f25f 246 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 11 246 26.323 T 16-09-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 BER92_RS02800 dfdd535112d07eba8764e4bd879f1ff9 232 Hamap MF_00013 Octanoyltransferase [lipB]. 17 218 38.353 T 16-09-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 BER92_RS02800 dfdd535112d07eba8764e4bd879f1ff9 232 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 87 140 5.0E-24 T 16-09-2016 BER92_RS02800 dfdd535112d07eba8764e4bd879f1ff9 232 PANTHER PTHR10993 18 217 1.2E-77 T 16-09-2016 BER92_RS02800 dfdd535112d07eba8764e4bd879f1ff9 232 SUPERFAMILY SSF55681 17 218 9.94E-70 T 16-09-2016 BER92_RS02800 dfdd535112d07eba8764e4bd879f1ff9 232 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 83 98 - T 16-09-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 BER92_RS02800 dfdd535112d07eba8764e4bd879f1ff9 232 PIRSF PIRSF016262 15 230 1.4E-59 T 16-09-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 BER92_RS02800 dfdd535112d07eba8764e4bd879f1ff9 232 Pfam PF03099 Biotin/lipoate A/B protein ligase family 72 171 5.4E-8 T 16-09-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 BER92_RS02800 dfdd535112d07eba8764e4bd879f1ff9 232 Gene3D G3DSA:3.90.1550.10 19 215 1.4E-73 T 16-09-2016 BER92_RS02800 dfdd535112d07eba8764e4bd879f1ff9 232 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 39 214 1.7E-63 T 16-09-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 PIRSF PIRSF000161 4 238 2.9E-71 T 16-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 123 236 5.4E-32 T 16-09-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 167 2.6E-40 T 16-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 PANTHER PTHR20836 4 236 4.0E-65 T 16-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 Gene3D G3DSA:3.40.50.720 4 157 2.0E-42 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 238 29.123 T 16-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 SUPERFAMILY SSF51735 5 121 5.6E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 SUPERFAMILY SSF51735 209 237 5.6E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 120 5.9E-25 T 16-09-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 SUPERFAMILY SSF55347 122 209 1.07E-22 T 16-09-2016 BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 Gene3D G3DSA:3.30.360.10 175 207 7.5E-7 T 16-09-2016 BER92_RS09355 9f6e1274d3a573d9007344577aaed477 238 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 144 161 - T 16-09-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 131 154 1.3E-54 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 178 199 1.3E-54 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 61 77 1.3E-54 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 209 233 1.3E-54 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 39 59 1.3E-54 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 82 98 1.3E-54 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 82 95 - T 16-09-2016 IPR020583 Inositol monophosphatase, metal-binding site BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PANTHER PTHR20854:SF4 1 263 2.5E-91 T 16-09-2016 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 SUPERFAMILY SSF56655 5 264 3.27E-77 T 16-09-2016 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 212 226 - T 16-09-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 Pfam PF00459 Inositol monophosphatase family 4 253 1.6E-63 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 Gene3D G3DSA:3.30.540.10 5 151 2.4E-47 T 16-09-2016 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 105 124 9.8E-20 T 16-09-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 157 183 9.8E-20 T 16-09-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 199 211 9.8E-20 T 16-09-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 18 40 9.8E-20 T 16-09-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 Gene3D G3DSA:3.40.190.80 152 265 6.1E-35 T 16-09-2016 BER92_RS12005 2cc2cd9622c4a6e49dde40abc875debd 277 PANTHER PTHR20854 1 263 2.5E-91 T 16-09-2016 IPR000760 Inositol monophosphatase GO:0046854 BER92_RS12270 84c69b0f6b9161436b665b5c8387f73c 854 PANTHER PTHR34697 6 854 0.0 T 16-09-2016 BER92_RS12270 84c69b0f6b9161436b665b5c8387f73c 854 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 542 828 1.6E-96 T 16-09-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal BER92_RS12270 84c69b0f6b9161436b665b5c8387f73c 854 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 22 303 6.3E-9 T 16-09-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD BER92_RS12270 84c69b0f6b9161436b665b5c8387f73c 854 PANTHER PTHR34697:SF2 6 854 0.0 T 16-09-2016 BER92_RS12270 84c69b0f6b9161436b665b5c8387f73c 854 SUPERFAMILY SSF55729 810 827 4.61E-17 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS12270 84c69b0f6b9161436b665b5c8387f73c 854 SUPERFAMILY SSF55729 650 783 4.61E-17 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS06075 46adcda9eb85b4206678fc085090b582 349 Gene3D G3DSA:3.40.50.2000 172 253 2.3E-4 T 16-09-2016 BER92_RS06075 46adcda9eb85b4206678fc085090b582 349 SUPERFAMILY SSF53756 11 292 4.63E-18 T 16-09-2016 BER92_RS06075 46adcda9eb85b4206678fc085090b582 349 Pfam PF13692 Glycosyl transferases group 1 171 276 8.6E-8 T 16-09-2016 BER92_RS15955 0f106c372d87654c1fbe2e4f1e147efc 186 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 25 178 2.8E-40 T 16-09-2016 IPR026353 Hypoxanthine-DNA glycosylase BER92_RS15955 0f106c372d87654c1fbe2e4f1e147efc 186 SMART SM00987 24 182 1.1E-5 T 16-09-2016 BER92_RS15955 0f106c372d87654c1fbe2e4f1e147efc 186 Gene3D G3DSA:3.40.470.10 23 185 5.5E-36 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS15955 0f106c372d87654c1fbe2e4f1e147efc 186 SUPERFAMILY SSF52141 23 183 8.5E-37 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS15955 0f106c372d87654c1fbe2e4f1e147efc 186 Pfam PF03167 Uracil DNA glycosylase superfamily 29 181 6.4E-11 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS15955 0f106c372d87654c1fbe2e4f1e147efc 186 SMART SM00986 24 182 1.1E-5 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 PANTHER PTHR10357 207 372 2.5E-172 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 PANTHER PTHR10357 1 124 2.5E-172 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 Gene3D G3DSA:3.20.20.80 255 338 3.8E-73 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 Gene3D G3DSA:3.20.20.80 524 564 3.8E-73 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 Gene3D G3DSA:3.20.20.80 676 799 3.8E-73 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 Gene3D G3DSA:3.20.20.80 6 96 3.8E-73 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 PANTHER PTHR10357:SF166 207 372 2.5E-172 T 16-09-2016 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 PANTHER PTHR10357:SF166 656 864 2.5E-172 T 16-09-2016 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 PANTHER PTHR10357:SF166 1 124 2.5E-172 T 16-09-2016 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 Gene3D G3DSA:1.10.10.470 565 667 3.5E-25 T 16-09-2016 IPR013797 Maltooligosyl trehalose synthase, N-terminal MetaCyc: PWY-2661 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 PANTHER PTHR10357 656 864 2.5E-172 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 SMART SM00642 7 750 2.0E-6 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 Gene3D G3DSA:3.30.1590.10 97 239 5.9E-42 T 16-09-2016 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 5 865 0.0 T 16-09-2016 IPR012767 Malto-oligosyltrehalose synthase MetaCyc: PWY-2661 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 Pfam PF00128 Alpha amylase, catalytic domain 24 117 3.6E-13 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 SUPERFAMILY SSF51445 5 138 1.68E-125 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 SUPERFAMILY SSF51445 474 766 1.68E-125 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS17585 04a187c7c64d1faf4547c05ba8bd9a1c 867 SUPERFAMILY SSF51445 197 440 1.68E-125 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS09735 34c667ffd806499688107c1df21011e2 215 SMART SM00448 3 116 3.7E-24 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 Pfam PF00072 Response regulator receiver domain 5 116 5.0E-23 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 PANTHER PTHR26402:SF506 3 203 6.3E-73 T 16-09-2016 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 Gene3D G3DSA:3.40.50.2300 2 152 7.1E-31 T 16-09-2016 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 PANTHER PTHR26402 3 203 6.3E-73 T 16-09-2016 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 SUPERFAMILY SSF46894 144 210 4.76E-18 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 SUPERFAMILY SSF52172 2 132 3.98E-28 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS09735 34c667ffd806499688107c1df21011e2 215 SMART SM00421 146 203 1.9E-17 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 4.4E-11 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 4.4E-11 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 4.4E-11 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 203 4.8E-16 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS09735 34c667ffd806499688107c1df21011e2 215 Gene3D G3DSA:1.10.10.10 153 208 1.7E-19 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS16655 e2f449e90f717a5351dcf883c6e1adeb 1121 Gene3D G3DSA:3.40.50.300 408 515 2.6E-5 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16655 e2f449e90f717a5351dcf883c6e1adeb 1121 Gene3D G3DSA:3.40.50.300 555 628 2.6E-5 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16655 e2f449e90f717a5351dcf883c6e1adeb 1121 TIGRFAM TIGR02562 cas3_yersinia: CRISPR-associated helicase Cas3, subtype I-F/YPEST 2 1116 0.0 T 16-09-2016 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type BER92_RS16655 e2f449e90f717a5351dcf883c6e1adeb 1121 SUPERFAMILY SSF52540 834 881 1.48E-18 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16655 e2f449e90f717a5351dcf883c6e1adeb 1121 SUPERFAMILY SSF52540 425 479 1.48E-18 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16655 e2f449e90f717a5351dcf883c6e1adeb 1121 SUPERFAMILY SSF52540 531 628 1.48E-18 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16655 e2f449e90f717a5351dcf883c6e1adeb 1121 SUPERFAMILY SSF52540 712 802 1.48E-18 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11995 b33d2ce6be57b0070d928bec9e91e662 342 PANTHER PTHR30538:SF1 18 342 1.6E-119 T 16-09-2016 BER92_RS11995 b33d2ce6be57b0070d928bec9e91e662 342 PANTHER PTHR30538 18 342 1.6E-119 T 16-09-2016 BER92_RS11995 b33d2ce6be57b0070d928bec9e91e662 342 PIRSF PIRSF004911 11 342 5.7E-106 T 16-09-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BER92_RS11995 b33d2ce6be57b0070d928bec9e91e662 342 TIGRFAM TIGR00238 TIGR00238: KamA family protein 21 335 2.3E-89 T 16-09-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BER92_RS11995 b33d2ce6be57b0070d928bec9e91e662 342 Pfam PF04055 Radical SAM superfamily 124 267 3.8E-7 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS11995 b33d2ce6be57b0070d928bec9e91e662 342 Gene3D G3DSA:3.20.20.70 117 318 3.5E-9 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS11995 b33d2ce6be57b0070d928bec9e91e662 342 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 22 341 9.8E-137 T 16-09-2016 IPR022462 Lysine-2,3-aminomutase-like BER92_RS11995 b33d2ce6be57b0070d928bec9e91e662 342 SUPERFAMILY SSF102114 114 332 1.96E-19 T 16-09-2016 BER92_RS11995 b33d2ce6be57b0070d928bec9e91e662 342 Pfam PF13394 4Fe-4S single cluster domain 122 191 1.1E-4 T 16-09-2016 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 Gene3D G3DSA:1.10.286.20 191 235 4.4E-11 T 16-09-2016 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 Pfam PF00889 Elongation factor TS 70 272 1.8E-64 T 16-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 Hamap MF_00050 Elongation factor Ts [tsf]. 1 289 73.881 T 16-09-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 Gene3D G3DSA:1.10.8.10 1 54 2.3E-28 T 16-09-2016 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 289 7.2E-100 T 16-09-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 SUPERFAMILY SSF54713 55 144 2.45E-20 T 16-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 16-09-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 16-09-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 SUPERFAMILY SSF54713 149 289 1.03E-45 T 16-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 Gene3D G3DSA:3.30.479.20 56 147 2.5E-15 T 16-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 SUPERFAMILY SSF46934 1 55 2.01E-19 T 16-09-2016 IPR009060 UBA-like GO:0005515 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 Gene3D G3DSA:3.30.479.20 150 185 2.1E-27 T 16-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 Gene3D G3DSA:3.30.479.20 236 271 2.1E-27 T 16-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 BER92_RS06435 7abc133392d61a57d7e2e321948b2518 292 PANTHER PTHR11741 1 292 8.2E-131 T 16-09-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 BER92_RS00290 2d6d115c51d0386403ca37e4585f1641 412 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 74 295 1.6E-20 T 16-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BER92_RS00290 2d6d115c51d0386403ca37e4585f1641 412 PANTHER PTHR30469 1 388 2.0E-187 T 16-09-2016 BER92_RS00290 2d6d115c51d0386403ca37e4585f1641 412 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 50 377 3.2E-84 T 16-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 BER92_RS00290 2d6d115c51d0386403ca37e4585f1641 412 SUPERFAMILY SSF111369 64 300 1.18E-56 T 16-09-2016 BER92_RS00290 2d6d115c51d0386403ca37e4585f1641 412 PANTHER PTHR30469:SF12 1 388 2.0E-187 T 16-09-2016 IPR022824 Multidrug resistance protein MdtA BER92_RS00290 2d6d115c51d0386403ca37e4585f1641 412 Gene3D G3DSA:2.40.50.100 183 215 3.2E-22 T 16-09-2016 BER92_RS00290 2d6d115c51d0386403ca37e4585f1641 412 Gene3D G3DSA:2.40.50.100 74 108 3.2E-22 T 16-09-2016 BER92_RS14125 36e2caf28d6fe5a4fe2bd2acd2d64254 249 Gene3D G3DSA:1.10.510.10 157 233 2.0E-11 T 16-09-2016 BER92_RS14125 36e2caf28d6fe5a4fe2bd2acd2d64254 249 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 40 241 3.4E-68 T 16-09-2016 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 BER92_RS14125 36e2caf28d6fe5a4fe2bd2acd2d64254 249 SUPERFAMILY SSF56112 95 240 2.02E-15 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS14125 36e2caf28d6fe5a4fe2bd2acd2d64254 249 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 10 243 38.699 T 16-09-2016 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676|UniPathway: UPA00958 BER92_RS14880 a618e9d5d26fb4f130626ba787729b36 256 PANTHER PTHR11941 3 253 1.0E-64 T 16-09-2016 BER92_RS14880 a618e9d5d26fb4f130626ba787729b36 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 223 1.3E-39 T 16-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 BER92_RS14880 a618e9d5d26fb4f130626ba787729b36 256 Gene3D G3DSA:3.90.226.10 3 227 1.9E-45 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS14880 a618e9d5d26fb4f130626ba787729b36 256 SUPERFAMILY SSF52096 8 243 1.29E-47 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS14880 a618e9d5d26fb4f130626ba787729b36 256 PANTHER PTHR11941:SF45 3 253 1.0E-64 T 16-09-2016 BER92_RS14230 ce295060aeec24a96955f52b979a3ccd 219 PANTHER PTHR35369 1 219 2.0E-112 T 16-09-2016 BER92_RS14230 ce295060aeec24a96955f52b979a3ccd 219 PANTHER PTHR35369:SF1 1 219 2.0E-112 T 16-09-2016 BER92_RS14230 ce295060aeec24a96955f52b979a3ccd 219 Gene3D G3DSA:3.40.50.300 65 177 3.5E-38 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14230 ce295060aeec24a96955f52b979a3ccd 219 PIRSF PIRSF037290 19 218 1.7E-77 T 16-09-2016 IPR017166 Uncharacterised conserved protein UCP037290 BER92_RS14230 ce295060aeec24a96955f52b979a3ccd 219 SUPERFAMILY SSF52540 64 177 2.76E-31 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07315 7e8a80cb223b9dada925677d92cf1356 196 SUPERFAMILY SSF74942 90 159 3.53E-13 T 16-09-2016 IPR028998 Ribosome maturation factor RimP, C-terminal BER92_RS07315 7e8a80cb223b9dada925677d92cf1356 196 Gene3D G3DSA:2.30.30.180 94 155 6.4E-8 T 16-09-2016 IPR028998 Ribosome maturation factor RimP, C-terminal BER92_RS07315 7e8a80cb223b9dada925677d92cf1356 196 Pfam PF02576 Putative ribosome maturation factor RimP 12 155 6.3E-46 T 16-09-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 BER92_RS07315 7e8a80cb223b9dada925677d92cf1356 196 PANTHER PTHR33867 1 190 4.6E-49 T 16-09-2016 BER92_RS07315 7e8a80cb223b9dada925677d92cf1356 196 PANTHER PTHR33867:SF1 1 190 4.6E-49 T 16-09-2016 BER92_RS07315 7e8a80cb223b9dada925677d92cf1356 196 Gene3D G3DSA:3.30.300.70 3 86 1.0E-25 T 16-09-2016 IPR028989 Ribosome maturation factor RimP, N-terminal BER92_RS07315 7e8a80cb223b9dada925677d92cf1356 196 SUPERFAMILY SSF75420 5 89 1.57E-20 T 16-09-2016 IPR028989 Ribosome maturation factor RimP, N-terminal BER92_RS07315 7e8a80cb223b9dada925677d92cf1356 196 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 159 24.01 T 16-09-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 BER92_RS14885 59b9d929da0b4f3d92dfaaa36b7c9b82 301 PANTHER PTHR11066:SF34 9 293 2.5E-118 T 16-09-2016 BER92_RS14885 59b9d929da0b4f3d92dfaaa36b7c9b82 301 PANTHER PTHR11066 9 293 2.5E-118 T 16-09-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 BER92_RS14885 59b9d929da0b4f3d92dfaaa36b7c9b82 301 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 16 287 9.1E-91 T 16-09-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 BER92_RS14885 59b9d929da0b4f3d92dfaaa36b7c9b82 301 Gene3D G3DSA:3.10.129.10 128 288 3.5E-55 T 16-09-2016 IPR029069 HotDog domain BER92_RS14885 59b9d929da0b4f3d92dfaaa36b7c9b82 301 SUPERFAMILY SSF54637 120 290 2.49E-53 T 16-09-2016 IPR029069 HotDog domain BER92_RS14885 59b9d929da0b4f3d92dfaaa36b7c9b82 301 SUPERFAMILY SSF54637 8 118 1.89E-39 T 16-09-2016 IPR029069 HotDog domain BER92_RS14885 59b9d929da0b4f3d92dfaaa36b7c9b82 301 Gene3D G3DSA:3.10.129.10 9 119 1.7E-46 T 16-09-2016 IPR029069 HotDog domain BER92_RS14885 59b9d929da0b4f3d92dfaaa36b7c9b82 301 Pfam PF13622 Thioesterase-like superfamily 31 286 2.0E-59 T 16-09-2016 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 SUPERFAMILY SSF50249 135 203 5.15E-18 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Gene3D G3DSA:3.30.300.20 282 350 1.4E-27 T 16-09-2016 IPR015946 K homology domain-like, alpha/beta BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 SUPERFAMILY SSF47794 359 419 4.55E-16 T 16-09-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 SMART SM00316 137 204 2.0E-6 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 SUPERFAMILY SSF69705 1 130 1.2E-36 T 16-09-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 SUPERFAMILY SSF54814 205 282 3.4E-29 T 16-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 SUPERFAMILY SSF54814 283 346 8.5E-15 T 16-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Pfam PF00575 S1 RNA binding domain 135 199 3.9E-6 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 SUPERFAMILY SSF47794 433 493 1.73E-9 T 16-09-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Gene3D G3DSA:1.10.150.20 360 424 5.5E-21 T 16-09-2016 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Gene3D G3DSA:1.10.150.20 433 493 9.1E-15 T 16-09-2016 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Pfam PF13184 NusA-like KH domain 234 301 1.8E-27 T 16-09-2016 IPR025249 KH domain, NusA-like GO:0003723 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 PANTHER PTHR22648 1 452 1.8E-172 T 16-09-2016 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Gene3D G3DSA:3.30.300.20 203 281 1.7E-33 T 16-09-2016 IPR015946 K homology domain-like, alpha/beta BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 347 8.9E-126 T 16-09-2016 IPR010213 Transcription termination factor NusA GO:0003723 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Gene3D G3DSA:2.40.50.140 133 202 7.4E-24 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 SMART SM00322 234 297 19.0 T 16-09-2016 IPR004087 K Homology domain GO:0003676 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 SMART SM00322 305 368 0.065 T 16-09-2016 IPR004087 K Homology domain GO:0003676 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 PANTHER PTHR22648:SF0 1 452 1.8E-172 T 16-09-2016 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Pfam PF08529 NusA N-terminal domain 4 128 5.0E-36 T 16-09-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Pfam PF14520 Helix-hairpin-helix domain 436 492 9.3E-8 T 16-09-2016 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Gene3D G3DSA:3.30.1480.10 1 128 5.8E-42 T 16-09-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 414 29.498 T 16-09-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 369 418 2.2E-22 T 16-09-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication BER92_RS07320 bcd16ecad672b8f4490b83497f8d5e70 503 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 444 494 4.2E-18 T 16-09-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 18 316 37.18 T 16-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 Gene3D G3DSA:3.40.50.150 225 316 3.8E-48 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 Gene3D G3DSA:3.40.50.150 18 119 3.8E-48 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 PANTHER PTHR11265 16 318 2.4E-138 T 16-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 SUPERFAMILY SSF81799 123 222 6.15E-34 T 16-09-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 17 315 1.2E-98 T 16-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 PIRSF PIRSF004486 12 317 4.2E-97 T 16-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 Gene3D G3DSA:1.10.150.170 122 224 4.1E-36 T 16-09-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 Pfam PF01795 MraW methylase family 17 315 4.3E-99 T 16-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 SUPERFAMILY SSF53335 222 316 8.53E-43 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 SUPERFAMILY SSF53335 18 122 8.53E-43 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03740 da49280d4c479574c54a67b58b3d716a 347 PANTHER PTHR11265:SF0 16 318 2.4E-138 T 16-09-2016 BER92_RS10075 73e750552d0f31a4204367ec67afad27 212 PANTHER PTHR30173:SF13 45 137 2.6E-32 T 16-09-2016 BER92_RS10075 73e750552d0f31a4204367ec67afad27 212 Pfam PF09976 Tetratricopeptide repeat-like domain 17 202 1.2E-39 T 16-09-2016 IPR018704 Tetratricopeptide repeat-like domain BER92_RS10075 73e750552d0f31a4204367ec67afad27 212 PANTHER PTHR30173 45 137 2.6E-32 T 16-09-2016 BER92_RS10075 73e750552d0f31a4204367ec67afad27 212 Gene3D G3DSA:1.25.40.10 90 182 2.4E-8 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS10075 73e750552d0f31a4204367ec67afad27 212 SUPERFAMILY SSF48452 94 183 1.26E-9 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS14800 e2d0ae6e488f138c88cb935a5a692521 208 Gene3D G3DSA:1.20.120.80 28 206 3.8E-53 T 16-09-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 BER92_RS14800 e2d0ae6e488f138c88cb935a5a692521 208 PANTHER PTHR11403 16 208 8.7E-115 T 16-09-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 BER92_RS14800 e2d0ae6e488f138c88cb935a5a692521 208 SUPERFAMILY SSF81452 15 206 1.2E-57 T 16-09-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 BER92_RS14800 e2d0ae6e488f138c88cb935a5a692521 208 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 29 208 2.0E-83 T 16-09-2016 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 BER92_RS14800 e2d0ae6e488f138c88cb935a5a692521 208 PANTHER PTHR11403:SF2 16 208 8.7E-115 T 16-09-2016 BER92_RS14800 e2d0ae6e488f138c88cb935a5a692521 208 Pfam PF00510 Cytochrome c oxidase subunit III 30 206 3.4E-14 T 16-09-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 SMART SM00917 376 504 4.8E-29 T 16-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 Gene3D G3DSA:3.20.20.70 7 353 2.4E-139 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 PANTHER PTHR10277:SF9 7 512 2.3E-237 T 16-09-2016 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 Pfam PF00682 HMGL-like 11 279 7.6E-91 T 16-09-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 Pfam PF08502 LeuA allosteric (dimerisation) domain 377 504 8.1E-30 T 16-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 19 35 - T 16-09-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 11 501 1.1E-194 T 16-09-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 9 513 40.017 T 16-09-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 PANTHER PTHR10277 7 512 2.3E-237 T 16-09-2016 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 206 219 - T 16-09-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 SUPERFAMILY SSF110921 417 503 4.32E-21 T 16-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 BER92_RS03320 a23beb302ea0ed831a99c65e55f8e454 520 SUPERFAMILY SSF51569 8 298 2.2E-93 T 16-09-2016 BER92_RS12585 0f539d42d1808a1d1111ec609b6a2b4d 381 SUPERFAMILY SSF51713 3 368 2.49E-151 T 16-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12585 0f539d42d1808a1d1111ec609b6a2b4d 381 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 371 1.4E-153 T 16-09-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12585 0f539d42d1808a1d1111ec609b6a2b4d 381 PANTHER PTHR21148:SF26 1 369 3.2E-163 T 16-09-2016 BER92_RS12585 0f539d42d1808a1d1111ec609b6a2b4d 381 Pfam PF01702 Queuine tRNA-ribosyltransferase 129 365 7.3E-86 T 16-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12585 0f539d42d1808a1d1111ec609b6a2b4d 381 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 371 5.7E-148 T 16-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12585 0f539d42d1808a1d1111ec609b6a2b4d 381 Gene3D G3DSA:3.20.20.105 2 369 1.2E-157 T 16-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12585 0f539d42d1808a1d1111ec609b6a2b4d 381 PANTHER PTHR21148 1 369 3.2E-163 T 16-09-2016 BER92_RS12585 0f539d42d1808a1d1111ec609b6a2b4d 381 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 363 56.906 T 16-09-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 PANTHER PTHR11085:SF22 10 148 8.4E-132 T 16-09-2016 BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 SUPERFAMILY SSF52467 7 273 2.02E-78 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 PANTHER PTHR11085:SF22 166 283 8.4E-132 T 16-09-2016 BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 PANTHER PTHR11085 10 148 8.4E-132 T 16-09-2016 IPR003000 Sirtuin family GO:0070403 BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 PANTHER PTHR11085 166 283 8.4E-132 T 16-09-2016 IPR003000 Sirtuin family GO:0070403 BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 Gene3D G3DSA:3.40.50.1220 8 37 9.4E-40 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 Gene3D G3DSA:3.40.50.1220 205 273 9.4E-40 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 Gene3D G3DSA:3.40.50.1220 87 124 9.4E-40 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 Pfam PF02146 Sir2 family 27 229 2.5E-46 T 16-09-2016 IPR003000 Sirtuin family GO:0070403 BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 Gene3D G3DSA:3.30.1600.10 38 73 1.8E-19 T 16-09-2016 IPR026591 Sirtuin family, catalytic core small domain BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 Gene3D G3DSA:3.30.1600.10 125 199 1.8E-19 T 16-09-2016 IPR026591 Sirtuin family, catalytic core small domain BER92_RS16495 c96efc07675de1d8656fdff415e2be75 293 Hamap MF_01967 NAD-dependent protein deacetylase [cobB]. 1 273 63.226 T 16-09-2016 IPR026587 Sirtuin, class II BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 Pfam PF00717 Peptidase S24-like 117 182 2.7E-15 T 16-09-2016 IPR019759 Peptidase S24/S26A/S26B BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 114 124 1.4E-10 T 16-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 125 136 1.4E-10 T 16-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 153 165 1.4E-10 T 16-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 Gene3D G3DSA:1.10.10.10 1 68 8.0E-19 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 TIGRFAM TIGR00498 lexA: repressor LexA 1 200 1.4E-51 T 16-09-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 PANTHER PTHR33516:SF2 1 200 6.0E-80 T 16-09-2016 BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 PANTHER PTHR33516 1 200 6.0E-80 T 16-09-2016 BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 Pfam PF01726 LexA DNA binding domain 1 64 1.1E-13 T 16-09-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 Hamap MF_00015 LexA repressor [lexA]. 3 201 27.909 T 16-09-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 SUPERFAMILY SSF51306 78 199 1.27E-32 T 16-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 SUPERFAMILY SSF46785 3 68 1.99E-13 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS14235 66685716ad4eb953257ce9f0dd0b0b18 201 Gene3D G3DSA:2.10.109.10 79 200 3.5E-38 T 16-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain BER92_RS06030 d16d208409e15e3c8218ee04dbdaa8d3 118 Pfam PF13411 MerR HTH family regulatory protein 19 86 1.2E-21 T 16-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BER92_RS06030 d16d208409e15e3c8218ee04dbdaa8d3 118 PANTHER PTHR30204 11 118 8.4E-35 T 16-09-2016 BER92_RS06030 d16d208409e15e3c8218ee04dbdaa8d3 118 PANTHER PTHR30204:SF15 11 118 8.4E-35 T 16-09-2016 BER92_RS06030 d16d208409e15e3c8218ee04dbdaa8d3 118 Gene3D G3DSA:1.10.1660.10 16 83 7.1E-16 T 16-09-2016 BER92_RS06030 d16d208409e15e3c8218ee04dbdaa8d3 118 SUPERFAMILY SSF46955 17 112 2.06E-17 T 16-09-2016 IPR009061 Putative DNA-binding domain BER92_RS06030 d16d208409e15e3c8218ee04dbdaa8d3 118 SMART SM00422 19 89 2.2E-5 T 16-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 PANTHER PTHR11079 2 213 7.7E-64 T 16-09-2016 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 6 103 4.9E-18 T 16-09-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 11 355 1.8E-112 T 16-09-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 Pfam PF01872 RibD C-terminal domain 151 354 2.9E-44 T 16-09-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 PANTHER PTHR11079:SF10 2 213 7.7E-64 T 16-09-2016 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 92 - T 16-09-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 Gene3D G3DSA:3.40.140.10 6 132 7.2E-32 T 16-09-2016 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 150 358 1.1E-53 T 16-09-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 Gene3D G3DSA:3.40.430.10 133 359 2.7E-67 T 16-09-2016 IPR024072 Dihydrofolate reductase-like domain BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 SUPERFAMILY SSF53927 7 148 1.77E-46 T 16-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 SUPERFAMILY SSF53597 149 357 9.96E-56 T 16-09-2016 IPR024072 Dihydrofolate reductase-like domain BER92_RS04495 69a9b7eeca1a4637c9d726f44076f403 364 PIRSF PIRSF006769 2 362 2.7E-120 T 16-09-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 BER92_RS08505 ca74debd164d99eb133961a7f263a3b7 104 Gene3D G3DSA:3.30.420.10 20 80 0.001 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS08505 ca74debd164d99eb133961a7f263a3b7 104 SUPERFAMILY SSF53098 24 89 3.03E-7 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS14175 b979a394b3d54a902bd9cf305ce3b6d2 269 PANTHER PTHR33803 1 248 6.5E-69 T 16-09-2016 BER92_RS14175 b979a394b3d54a902bd9cf305ce3b6d2 269 PANTHER PTHR33803:SF1 1 248 6.5E-69 T 16-09-2016 BER92_RS16995 110628183f6ca6e433f9e225b084090d 339 PANTHER PTHR11603 18 339 9.0E-147 T 16-09-2016 BER92_RS16995 110628183f6ca6e433f9e225b084090d 339 PIRSF PIRSF002849 8 339 1.8E-125 T 16-09-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted BER92_RS16995 110628183f6ca6e433f9e225b084090d 339 Gene3D G3DSA:1.10.8.300 223 335 1.6E-38 T 16-09-2016 BER92_RS16995 110628183f6ca6e433f9e225b084090d 339 PANTHER PTHR11603:SF148 18 339 9.0E-147 T 16-09-2016 BER92_RS16995 110628183f6ca6e433f9e225b084090d 339 SUPERFAMILY SSF52540 25 311 3.23E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16995 110628183f6ca6e433f9e225b084090d 339 Gene3D G3DSA:3.40.50.300 36 200 5.5E-43 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16995 110628183f6ca6e433f9e225b084090d 339 SMART SM00382 51 192 0.0062 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS16995 110628183f6ca6e433f9e225b084090d 339 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 54 184 1.0E-62 T 16-09-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 SUPERFAMILY SSF52279 451 666 1.96E-45 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 451 665 8.1E-34 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 Gene3D G3DSA:3.20.20.300 70 419 4.2E-103 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 Gene3D G3DSA:3.40.50.1700 437 664 3.8E-62 T 16-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 SUPERFAMILY SSF51445 69 450 1.37E-103 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 PANTHER PTHR30620 122 665 4.9E-191 T 16-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 PANTHER PTHR30620 43 101 4.9E-191 T 16-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 222 238 3.2E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 176 195 3.2E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 263 279 3.2E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 152 168 3.2E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 333 351 3.2E-19 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS10775 3134098bd5238c947e4111f7dc0525ed 870 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 87 410 1.1E-77 T 16-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BER92_RS19270 e27fb1ce91d4b1212b234bcb60b7e055 389 PIRSF PIRSF006078 1 377 2.8E-134 T 16-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BER92_RS19270 e27fb1ce91d4b1212b234bcb60b7e055 389 Gene3D G3DSA:3.90.1510.10 42 274 7.8E-97 T 16-09-2016 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 BER92_RS19270 e27fb1ce91d4b1212b234bcb60b7e055 389 SUPERFAMILY SSF110738 1 375 1.57E-136 T 16-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BER92_RS19270 e27fb1ce91d4b1212b234bcb60b7e055 389 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 5.6E-153 T 16-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BER92_RS19270 e27fb1ce91d4b1212b234bcb60b7e055 389 PANTHER PTHR21599 1 388 1.5E-196 T 16-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BER92_RS19270 e27fb1ce91d4b1212b234bcb60b7e055 389 Pfam PF02595 Glycerate kinase family 3 373 4.3E-147 T 16-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BER92_RS19270 e27fb1ce91d4b1212b234bcb60b7e055 389 PANTHER PTHR21599:SF4 1 388 1.5E-196 T 16-09-2016 BER92_RS08245 d80b20aadcefa0cf51c03ddc4ee64916 287 SUPERFAMILY SSF161098 25 273 3.08E-30 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS08245 d80b20aadcefa0cf51c03ddc4ee64916 287 Gene3D G3DSA:1.10.3720.10 21 281 1.6E-31 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS08245 d80b20aadcefa0cf51c03ddc4ee64916 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 276 4.6E-20 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS08245 d80b20aadcefa0cf51c03ddc4ee64916 287 PANTHER PTHR30425 1 287 9.2E-116 T 16-09-2016 BER92_RS08245 d80b20aadcefa0cf51c03ddc4ee64916 287 PANTHER PTHR30425:SF0 1 287 9.2E-116 T 16-09-2016 BER92_RS08245 d80b20aadcefa0cf51c03ddc4ee64916 287 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 19 282 4.9E-86 T 16-09-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 BER92_RS18485 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 SMART SM00448 1 112 5.0E-41 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS18485 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 SUPERFAMILY SSF52172 1 170 1.03E-39 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS18485 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 PANTHER PTHR26402 1 220 4.0E-126 T 16-09-2016 BER92_RS18485 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 Gene3D G3DSA:3.40.50.2300 1 123 4.0E-38 T 16-09-2016 BER92_RS18485 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 Pfam PF00072 Response regulator receiver domain 3 113 3.3E-27 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS18485 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 SMART SM00862 145 220 6.1E-26 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS18485 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 Gene3D G3DSA:1.10.10.10 124 221 3.7E-31 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS18485 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 3.4E-24 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS18485 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 PANTHER PTHR26402:SF600 1 220 4.0E-126 T 16-09-2016 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 SUPERFAMILY SSF53623 97 312 5.76E-53 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 SUPERFAMILY SSF53244 314 450 1.83E-34 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 Pfam PF01225 Mur ligase family, catalytic domain 4 98 2.2E-13 T 16-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 Pfam PF08245 Mur ligase middle domain 109 294 2.2E-25 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 PANTHER PTHR23135:SF17 1 442 1.8E-255 T 16-09-2016 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 PANTHER PTHR23135 1 442 1.8E-255 T 16-09-2016 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 Gene3D G3DSA:3.40.50.720 1 91 3.4E-32 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 Gene3D G3DSA:3.40.1190.10 94 315 1.9E-84 T 16-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 385 1.7E-10 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 Gene3D G3DSA:3.90.190.20 316 451 4.6E-33 T 16-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 SUPERFAMILY SSF51984 2 90 1.15E-17 T 16-09-2016 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3 451 8.8E-184 T 16-09-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 BER92_RS03430 2fe73a6707a7bf7fff6664298690b56b 452 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 2 452 55.441 T 16-09-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 BER92_RS11980 3b0319868f259b13c306e6ea25299a9d 445 PANTHER PTHR11271:SF7 10 442 6.5E-204 T 16-09-2016 BER92_RS11980 3b0319868f259b13c306e6ea25299a9d 445 Gene3D G3DSA:3.20.20.140 71 375 4.1E-99 T 16-09-2016 BER92_RS11980 3b0319868f259b13c306e6ea25299a9d 445 SUPERFAMILY SSF51556 68 367 7.23E-96 T 16-09-2016 IPR032466 Metal-dependent hydrolase BER92_RS11980 3b0319868f259b13c306e6ea25299a9d 445 Gene3D G3DSA:2.30.40.10 376 412 2.1E-10 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS11980 3b0319868f259b13c306e6ea25299a9d 445 Gene3D G3DSA:2.30.40.10 11 70 2.1E-10 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS11980 3b0319868f259b13c306e6ea25299a9d 445 PANTHER PTHR11271 10 442 6.5E-204 T 16-09-2016 BER92_RS11980 3b0319868f259b13c306e6ea25299a9d 445 SUPERFAMILY SSF51338 10 68 1.98E-24 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS11980 3b0319868f259b13c306e6ea25299a9d 445 SUPERFAMILY SSF51338 366 440 1.98E-24 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS11980 3b0319868f259b13c306e6ea25299a9d 445 Pfam PF01979 Amidohydrolase family 66 413 9.4E-66 T 16-09-2016 IPR006680 Amidohydrolase-related GO:0016787 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 Gene3D G3DSA:2.40.50.140 15 154 2.1E-41 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 PANTHER PTHR22594 3 504 1.4E-267 T 16-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 SUPERFAMILY SSF55681 162 502 1.27E-117 T 16-09-2016 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 PANTHER PTHR22594:SF4 3 504 1.4E-267 T 16-09-2016 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 3.4E-39 T 16-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 3.4E-39 T 16-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 3.4E-39 T 16-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 3.4E-39 T 16-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 3.4E-39 T 16-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 20 504 43.703 T 16-09-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 Gene3D G3DSA:3.30.930.10 157 499 2.7E-118 T 16-09-2016 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 Pfam PF01336 OB-fold nucleic acid binding domain 70 146 3.0E-14 T 16-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 SUPERFAMILY SSF50249 13 155 6.86E-38 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 163 501 9.5E-82 T 16-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS09400 fc5c84a7797996fb0c99a1efbb61e8a0 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 504 1.8E-198 T 16-09-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 141 222 1.6E-21 T 16-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 PIRSF PIRSF000463 25 743 2.9E-271 T 16-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 Pfam PF00128 Alpha amylase, catalytic domain 290 363 5.6E-6 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 Gene3D G3DSA:3.20.20.80 259 623 3.6E-90 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 117 742 42.683 T 16-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 643 741 1.7E-23 T 16-09-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 SUPERFAMILY SSF51445 195 634 1.39E-109 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 Gene3D G3DSA:2.60.40.1180 639 740 7.0E-35 T 16-09-2016 IPR013780 Glycosyl hydrolase, all-beta BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 SMART SM00642 265 612 3.9E-6 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 PANTHER PTHR10357 68 741 0.0 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 Gene3D G3DSA:2.60.40.10 34 125 9.2E-11 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 Gene3D G3DSA:2.60.40.10 136 235 2.8E-33 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 SUPERFAMILY SSF81296 35 129 2.1E-10 T 16-09-2016 IPR014756 Immunoglobulin E-set BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 133 739 1.6E-263 T 16-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 SUPERFAMILY SSF51011 639 742 3.96E-33 T 16-09-2016 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 PANTHER PTHR10357:SF158 68 741 0.0 T 16-09-2016 BER92_RS17600 e04c8db11a7c7a4e629e53317f562d7d 743 SUPERFAMILY SSF81296 154 220 8.12E-9 T 16-09-2016 IPR014756 Immunoglobulin E-set BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 10 283 34.475 T 16-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 Gene3D G3DSA:3.10.310.10 4 127 2.9E-45 T 16-09-2016 BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 73 87 - T 16-09-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 SUPERFAMILY SSF54506 148 282 5.18E-48 T 16-09-2016 BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 Gene3D G3DSA:3.10.310.10 128 272 2.3E-49 T 16-09-2016 BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 Pfam PF01678 Diaminopimelate epimerase 12 131 4.0E-22 T 16-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 Pfam PF01678 Diaminopimelate epimerase 162 277 2.9E-27 T 16-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 11 281 3.4E-76 T 16-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 SUPERFAMILY SSF54506 10 139 8.63E-39 T 16-09-2016 BER92_RS02670 5185bbd8e842b7a3fc019966b4e56f49 283 PANTHER PTHR31689 1 282 8.4E-115 T 16-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS18620 27da1438100eb4b60fa8c8d58098ffc7 219 SUPERFAMILY SSF49329 64 209 2.88E-42 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18620 27da1438100eb4b60fa8c8d58098ffc7 219 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 106 116 - T 16-09-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 BER92_RS18620 27da1438100eb4b60fa8c8d58098ffc7 219 PANTHER PTHR10003 59 210 8.3E-44 T 16-09-2016 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone MetaCyc: PWY-6854 BER92_RS18620 27da1438100eb4b60fa8c8d58098ffc7 219 Gene3D G3DSA:2.60.40.200 67 210 2.9E-49 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18620 27da1438100eb4b60fa8c8d58098ffc7 219 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 73 209 1.7E-43 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18620 27da1438100eb4b60fa8c8d58098ffc7 219 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 198 209 - T 16-09-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 BER92_RS18620 27da1438100eb4b60fa8c8d58098ffc7 219 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 106 128 1.4E-7 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18620 27da1438100eb4b60fa8c8d58098ffc7 219 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 184 210 1.4E-7 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18620 27da1438100eb4b60fa8c8d58098ffc7 219 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 143 152 1.4E-7 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS12855 d71b420f52c15a187b3fac35c5153c3d 138 PANTHER PTHR11407:SF34 1 97 1.0E-25 T 16-09-2016 BER92_RS12855 d71b420f52c15a187b3fac35c5153c3d 138 SUPERFAMILY SSF53955 7 133 7.59E-41 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS12855 d71b420f52c15a187b3fac35c5153c3d 138 Gene3D G3DSA:1.10.530.10 15 118 2.0E-21 T 16-09-2016 BER92_RS12855 d71b420f52c15a187b3fac35c5153c3d 138 Pfam PF01464 Transglycosylase SLT domain 17 113 8.4E-19 T 16-09-2016 IPR008258 Transglycosylase SLT domain 1 BER92_RS12855 d71b420f52c15a187b3fac35c5153c3d 138 PANTHER PTHR11407 1 97 1.0E-25 T 16-09-2016 BER92_RS08650 67134edfdd96dfc90e06c44551d5679d 439 PRINTS PR00723 Subtilisin serine protease family (S8) signature 188 207 1.7E-19 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS08650 67134edfdd96dfc90e06c44551d5679d 439 PRINTS PR00723 Subtilisin serine protease family (S8) signature 226 239 1.7E-19 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS08650 67134edfdd96dfc90e06c44551d5679d 439 PRINTS PR00723 Subtilisin serine protease family (S8) signature 377 393 1.7E-19 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS08650 67134edfdd96dfc90e06c44551d5679d 439 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 230 240 - T 16-09-2016 IPR022398 Peptidase S8, subtilisin, His-active site BER92_RS08650 67134edfdd96dfc90e06c44551d5679d 439 Gene3D G3DSA:3.40.50.200 125 429 6.3E-62 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS08650 67134edfdd96dfc90e06c44551d5679d 439 PANTHER PTHR10795 188 432 1.1E-40 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS08650 67134edfdd96dfc90e06c44551d5679d 439 Pfam PF00082 Subtilase family 188 416 1.6E-24 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS08650 67134edfdd96dfc90e06c44551d5679d 439 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 193 204 - T 16-09-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site BER92_RS08650 67134edfdd96dfc90e06c44551d5679d 439 SUPERFAMILY SSF52743 163 417 4.84E-55 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS02740 8114e6d1694bba7c5a312adbf7338d84 310 PANTHER PTHR10584:SF15 1 306 1.9E-140 T 16-09-2016 BER92_RS02740 8114e6d1694bba7c5a312adbf7338d84 310 Gene3D G3DSA:3.40.1190.20 2 304 5.0E-55 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS02740 8114e6d1694bba7c5a312adbf7338d84 310 PANTHER PTHR10584 1 306 1.9E-140 T 16-09-2016 BER92_RS02740 8114e6d1694bba7c5a312adbf7338d84 310 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 47 71 - T 16-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BER92_RS02740 8114e6d1694bba7c5a312adbf7338d84 310 SUPERFAMILY SSF53613 2 294 1.22E-63 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS02740 8114e6d1694bba7c5a312adbf7338d84 310 Pfam PF00294 pfkB family carbohydrate kinase 36 290 8.0E-37 T 16-09-2016 IPR011611 Carbohydrate kinase PfkB BER92_RS14450 4f8f288ece15fc2cf3efc3f54ec77946 259 PANTHER PTHR30625 31 259 6.5E-73 T 16-09-2016 BER92_RS14450 4f8f288ece15fc2cf3efc3f54ec77946 259 TIGRFAM TIGR02796 tolQ: protein TolQ 38 253 4.2E-87 T 16-09-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 BER92_RS14450 4f8f288ece15fc2cf3efc3f54ec77946 259 Pfam PF01618 MotA/TolQ/ExbB proton channel family 112 241 1.6E-37 T 16-09-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 BER92_RS14450 4f8f288ece15fc2cf3efc3f54ec77946 259 PANTHER PTHR30625:SF3 31 259 6.5E-73 T 16-09-2016 BER92_RS13575 fd18ff1f4449253c726fb52f2c0b320e 339 Gene3D G3DSA:3.90.1200.10 100 331 3.6E-60 T 16-09-2016 BER92_RS13575 fd18ff1f4449253c726fb52f2c0b320e 339 PANTHER PTHR33540:SF1 17 330 9.3E-143 T 16-09-2016 BER92_RS13575 fd18ff1f4449253c726fb52f2c0b320e 339 Pfam PF01636 Phosphotransferase enzyme family 30 251 5.2E-24 T 16-09-2016 IPR002575 Aminoglycoside phosphotransferase BER92_RS13575 fd18ff1f4449253c726fb52f2c0b320e 339 SUPERFAMILY SSF56112 17 308 3.64E-38 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS13575 fd18ff1f4449253c726fb52f2c0b320e 339 Gene3D G3DSA:3.30.200.20 10 97 2.5E-24 T 16-09-2016 BER92_RS13575 fd18ff1f4449253c726fb52f2c0b320e 339 PANTHER PTHR33540 17 330 9.3E-143 T 16-09-2016 BER92_RS05670 450bb02cd63edd047e83eb9b397dead3 244 PANTHER PTHR30027 1 244 1.7E-77 T 16-09-2016 BER92_RS05670 450bb02cd63edd047e83eb9b397dead3 244 Gene3D G3DSA:2.40.240.20 1 69 7.5E-22 T 16-09-2016 BER92_RS05670 450bb02cd63edd047e83eb9b397dead3 244 Gene3D G3DSA:3.40.1280.10 75 244 3.1E-55 T 16-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER92_RS05670 450bb02cd63edd047e83eb9b397dead3 244 SUPERFAMILY SSF88697 3 66 8.95E-14 T 16-09-2016 IPR015947 PUA-like domain BER92_RS05670 450bb02cd63edd047e83eb9b397dead3 244 SUPERFAMILY SSF75217 74 244 1.31E-48 T 16-09-2016 IPR029028 Alpha/beta knot methyltransferases BER92_RS05670 450bb02cd63edd047e83eb9b397dead3 244 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 17 244 6.0E-58 T 16-09-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS05670 450bb02cd63edd047e83eb9b397dead3 244 PIRSF PIRSF015601 5 244 5.7E-54 T 16-09-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS05670 450bb02cd63edd047e83eb9b397dead3 244 Pfam PF04452 RNA methyltransferase 18 238 1.4E-67 T 16-09-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS05670 450bb02cd63edd047e83eb9b397dead3 244 PANTHER PTHR30027:SF3 1 244 1.7E-77 T 16-09-2016 BER92_RS04695 3ef04ececcb28b98a19f870e422b8271 295 PANTHER PTHR30373:SF2 8 295 2.5E-78 T 16-09-2016 BER92_RS04695 3ef04ececcb28b98a19f870e422b8271 295 PANTHER PTHR30373 8 295 2.5E-78 T 16-09-2016 BER92_RS04695 3ef04ececcb28b98a19f870e422b8271 295 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 38 160 1.4E-36 T 16-09-2016 IPR007621 TPM domain BER92_RS19095 5a9b5346f4794d333843df1ca731f314 393 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 208 384 5.4E-51 T 16-09-2016 IPR024534 Domain of unknown function DUF2220 BER92_RS19095 5a9b5346f4794d333843df1ca731f314 393 Pfam PF11795 Uncharacterized protein conserved in bacteria N-term (DUF3322) 16 191 1.6E-45 T 16-09-2016 IPR024537 Domain of unknown function DUF3322 BER92_RS19095 5a9b5346f4794d333843df1ca731f314 393 PIRSF PIRSF028408 3 392 8.6E-69 T 16-09-2016 IPR014544 Uncharacterised conserved protein UCP028408 BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 Gene3D G3DSA:3.30.450.40 15 170 4.2E-14 T 16-09-2016 IPR029016 GAF domain-like BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 SUPERFAMILY SSF46894 163 233 1.9E-20 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 188 1.5E-12 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 204 1.5E-12 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 216 1.5E-12 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 PANTHER PTHR26402:SF151 158 233 8.0E-18 T 16-09-2016 BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 Pfam PF00196 Bacterial regulatory proteins, luxR family 173 228 1.8E-19 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 Gene3D G3DSA:1.10.10.10 171 233 1.9E-25 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 SUPERFAMILY SSF55781 22 147 6.11E-5 T 16-09-2016 IPR029016 GAF domain-like BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 PANTHER PTHR26402 158 233 8.0E-18 T 16-09-2016 BER92_RS04855 61e61fbccfd2d90ad2676c534c987188 235 SMART SM00421 171 228 6.3E-23 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 PANTHER PTHR11846 1 428 4.6E-243 T 16-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 Gene3D G3DSA:3.90.170.10 267 425 3.5E-66 T 16-09-2016 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 16-09-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 Gene3D G3DSA:1.10.300.10 104 196 3.2E-34 T 16-09-2016 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 Gene3D G3DSA:3.40.440.10 197 266 1.9E-69 T 16-09-2016 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 Gene3D G3DSA:3.40.440.10 3 94 1.9E-69 T 16-09-2016 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 SMART SM00788 4 424 1.1E-287 T 16-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 429 1.3E-176 T 16-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 Pfam PF00709 Adenylosuccinate synthetase 5 422 8.0E-174 T 16-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 430 208.132 T 16-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 SUPERFAMILY SSF52540 4 429 8.29E-175 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13840 6452bc4b943c901f0e4a021da4a09f4d 430 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 16-09-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 2.1E-47 T 16-09-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 16-09-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 16-09-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 3.2E-39 T 16-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 3.2E-39 T 16-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 3.2E-39 T 16-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 3.2E-39 T 16-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 SUPERFAMILY SSF54686 1 134 2.62E-53 T 16-09-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 Gene3D G3DSA:3.90.1170.10 24 134 2.2E-51 T 16-09-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 36.947 T 16-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 8.1E-56 T 16-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 BER92_RS05200 2e3751b25d9f1099d5f0af94abb73d43 137 PANTHER PTHR12220 1 137 7.7E-71 T 16-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 BER92_RS12670 85c907748a1b659b7c71998d251e63ff 435 SUPERFAMILY SSF53474 106 409 8.53E-32 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS12670 85c907748a1b659b7c71998d251e63ff 435 Gene3D G3DSA:3.40.50.1820 274 410 4.1E-11 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS12670 85c907748a1b659b7c71998d251e63ff 435 Gene3D G3DSA:3.40.50.1820 106 230 4.1E-11 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS12670 85c907748a1b659b7c71998d251e63ff 435 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 2 411 4.3E-205 T 16-09-2016 IPR010915 Polyhydroxyalkanoate depolymerase BER92_RS12670 85c907748a1b659b7c71998d251e63ff 435 Pfam PF06850 PHB de-polymerase C-terminus 211 412 8.6E-98 T 16-09-2016 IPR009656 PHB de-polymerase, C-terminal BER92_RS12670 85c907748a1b659b7c71998d251e63ff 435 PIRSF PIRSF020818 1 424 1.1E-197 T 16-09-2016 IPR010915 Polyhydroxyalkanoate depolymerase BER92_RS01455 ff5955710a29d664501f1850661f469b 221 SMART SM00448 1 112 3.7E-33 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS01455 ff5955710a29d664501f1850661f469b 221 SMART SM00862 145 216 3.1E-23 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS01455 ff5955710a29d664501f1850661f469b 221 PANTHER PTHR26402 1 216 6.5E-82 T 16-09-2016 BER92_RS01455 ff5955710a29d664501f1850661f469b 221 SUPERFAMILY SSF52172 1 118 6.83E-34 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS01455 ff5955710a29d664501f1850661f469b 221 SUPERFAMILY SSF46894 125 215 3.68E-24 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS01455 ff5955710a29d664501f1850661f469b 221 Gene3D G3DSA:3.40.50.2300 1 121 3.5E-32 T 16-09-2016 BER92_RS01455 ff5955710a29d664501f1850661f469b 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 215 1.3E-19 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS01455 ff5955710a29d664501f1850661f469b 221 PANTHER PTHR26402:SF292 1 216 6.5E-82 T 16-09-2016 BER92_RS01455 ff5955710a29d664501f1850661f469b 221 Gene3D G3DSA:1.10.10.10 127 216 1.4E-24 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS01455 ff5955710a29d664501f1850661f469b 221 Pfam PF00072 Response regulator receiver domain 4 112 2.2E-21 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 SMART SM00304 395 447 7.8 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 SMART SM00304 214 266 8.1E-8 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 502 694 2.1E-63 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 Pfam PF00672 HAMP domain 195 261 2.6E-13 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 PANTHER PTHR32089:SF63 430 698 2.6E-161 T 16-09-2016 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 PANTHER PTHR32089:SF63 159 248 2.6E-161 T 16-09-2016 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 179 1.7E-19 T 16-09-2016 IPR024478 4HB MCP domain BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 SUPERFAMILY SSF158472 214 265 5.62E-9 T 16-09-2016 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 SMART SM00283 448 695 1.5E-92 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 PANTHER PTHR32089 430 698 2.6E-161 T 16-09-2016 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 PANTHER PTHR32089 159 248 2.6E-161 T 16-09-2016 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 SUPERFAMILY SSF58104 415 698 5.89E-72 T 16-09-2016 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 Gene3D G3DSA:1.10.287.950 463 667 1.4E-61 T 16-09-2016 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 575 604 4.2E-57 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 469 498 4.2E-57 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 546 573 4.2E-57 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS09495 12603678cc1f08b27ca5577810f2613e 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 623 652 4.2E-57 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS02265 19336b4f10f438b0286c71b6a060369b 286 PANTHER PTHR30406 1 285 2.3E-164 T 16-09-2016 BER92_RS02265 19336b4f10f438b0286c71b6a060369b 286 Gene3D G3DSA:1.10.3720.10 26 280 7.8E-50 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS02265 19336b4f10f438b0286c71b6a060369b 286 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 17 280 4.2E-126 T 16-09-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 BER92_RS02265 19336b4f10f438b0286c71b6a060369b 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 278 2.0E-26 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS02265 19336b4f10f438b0286c71b6a060369b 286 SUPERFAMILY SSF161098 24 274 1.83E-55 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS02265 19336b4f10f438b0286c71b6a060369b 286 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 15 277 3.6E-97 T 16-09-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 BER92_RS02265 19336b4f10f438b0286c71b6a060369b 286 PANTHER PTHR30406:SF6 1 285 2.3E-164 T 16-09-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 BER92_RS04215 7909e790d163b054720767df5a6dfde9 243 PANTHER PTHR12598 1 240 3.9E-89 T 16-09-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 BER92_RS04215 7909e790d163b054720767df5a6dfde9 243 PANTHER PTHR12598:SF0 1 240 3.9E-89 T 16-09-2016 BER92_RS04215 7909e790d163b054720767df5a6dfde9 243 Gene3D G3DSA:3.20.20.380 6 241 1.2E-80 T 16-09-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 BER92_RS04215 7909e790d163b054720767df5a6dfde9 243 SUPERFAMILY SSF110395 6 240 2.62E-63 T 16-09-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 BER92_RS04215 7909e790d163b054720767df5a6dfde9 243 Pfam PF03932 CutC family 6 203 8.7E-78 T 16-09-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 BER92_RS04215 7909e790d163b054720767df5a6dfde9 243 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 4 241 36.862 T 16-09-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 SUPERFAMILY SSF51735 6 155 3.51E-38 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 PANTHER PTHR30525 2 396 2.8E-208 T 16-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 PIRSF PIRSF006205 6 395 4.3E-144 T 16-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 Gene3D G3DSA:1.10.1740.10 310 389 9.3E-29 T 16-09-2016 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 SUPERFAMILY SSF69055 299 388 9.29E-30 T 16-09-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 151 235 3.0E-39 T 16-09-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 Gene3D G3DSA:3.40.50.720 5 155 5.1E-46 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 SUPERFAMILY SSF55347 131 270 4.9E-58 T 16-09-2016 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 267 383 1.3E-37 T 16-09-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 389 1.1E-132 T 16-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 9 388 45.052 T 16-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS06405 e972eb380d2fce6fe77dc8324f32df62 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 9 137 9.9E-39 T 16-09-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 BER92_RS17920 d6df21febea67b1a3e44df1dc35db806 205 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 36.663 T 16-09-2016 IPR022927 RNA pyrophosphohydrolase RppH BER92_RS17920 d6df21febea67b1a3e44df1dc35db806 205 Gene3D G3DSA:3.90.79.10 4 149 7.9E-30 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS17920 d6df21febea67b1a3e44df1dc35db806 205 SUPERFAMILY SSF55811 7 151 6.36E-30 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS17920 d6df21febea67b1a3e44df1dc35db806 205 PANTHER PTHR23114 1 152 1.2E-50 T 16-09-2016 BER92_RS17920 d6df21febea67b1a3e44df1dc35db806 205 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 16-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BER92_RS17920 d6df21febea67b1a3e44df1dc35db806 205 Pfam PF00293 NUDIX domain 7 129 2.2E-24 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS16800 e3cf88250b8e46f67e22f8b7be2760e7 119 Pfam PF10101 Predicted membrane protein (DUF2339) 6 54 1.8E-7 T 16-09-2016 IPR019286 Protein of unknown function DUF2339, transmembrane BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 PIRSF PIRSF002401 1 354 3.2E-133 T 16-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 SUPERFAMILY SSF82051 3 158 8.76E-58 T 16-09-2016 IPR006169 GTP1/OBG domain GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 340 1.5E-136 T 16-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 PANTHER PTHR11702:SF3 1 353 4.0E-163 T 16-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 Gene3D G3DSA:3.40.50.300 160 349 5.3E-49 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 Pfam PF01926 50S ribosome-binding GTPase 161 293 2.9E-23 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 7.6E-35 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 7.6E-35 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 7.6E-35 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 7.6E-35 T 16-09-2016 IPR006073 GTP binding domain GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 PANTHER PTHR11702 1 353 4.0E-163 T 16-09-2016 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 Pfam PF01018 GTP1/OBG 3 158 4.5E-60 T 16-09-2016 IPR006169 GTP1/OBG domain GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 Hamap MF_01454 GTPase Obg [obg]. 2 342 47.539 T 16-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 16-09-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 SUPERFAMILY SSF52540 152 348 2.64E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14850 d1ef462cf244ef4c2469039ea7fe533a 355 Gene3D G3DSA:2.70.210.12 3 156 1.4E-59 T 16-09-2016 IPR006169 GTP1/OBG domain GO:0005525 BER92_RS12440 aca51a456bcb7bab39f51e6aaaacbb7a 413 Pfam PF04235 Protein of unknown function (DUF418) 244 400 3.3E-40 T 16-09-2016 IPR007349 Domain of unknown function DUF418 BER92_RS12440 aca51a456bcb7bab39f51e6aaaacbb7a 413 PANTHER PTHR30590:SF2 1 413 1.8E-129 T 16-09-2016 BER92_RS12440 aca51a456bcb7bab39f51e6aaaacbb7a 413 PANTHER PTHR30590 1 413 1.8E-129 T 16-09-2016 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 Gene3D G3DSA:3.50.50.60 10 183 7.0E-44 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 Gene3D G3DSA:3.50.50.60 269 355 7.0E-44 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 PANTHER PTHR13789:SF214 10 391 9.7E-153 T 16-09-2016 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 16-09-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 6.1E-19 T 16-09-2016 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 6.1E-19 T 16-09-2016 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 6.1E-19 T 16-09-2016 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 6.1E-19 T 16-09-2016 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 SUPERFAMILY SSF51905 268 386 9.5E-57 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 SUPERFAMILY SSF51905 10 178 9.5E-57 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 10 391 2.6E-131 T 16-09-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 PANTHER PTHR13789 10 391 9.7E-153 T 16-09-2016 BER92_RS04775 17353c537e0c71dffb9e611d42b52dd1 393 Pfam PF01494 FAD binding domain 9 338 1.5E-27 T 16-09-2016 IPR002938 FAD-binding domain GO:0071949 BER92_RS02060 7f22ab301fdc419e1bb238eb0c430889 325 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 14 323 2.5E-18 T 16-09-2016 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX BER92_RS05460 cfb49aa8db93bd9da570bbabf1bca162 252 Pfam PF17194 Transcriptional regulator, AbiEi antitoxin N-terminal domain 8 95 1.0E-24 T 16-09-2016 IPR033455 Transcriptional regulator AbiEi antitoxin, N-terminal domain BER92_RS05460 cfb49aa8db93bd9da570bbabf1bca162 252 Pfam PF11459 Transcriptional regulator, AbiEi antitoxin, Type IV TA system 101 245 1.1E-37 T 16-09-2016 IPR021561 Transcriptional regulator, AbiEi_3 antitoxin, Type IV TA system BER92_RS01765 7eec27acf5cc726a7a1855e1cd44dcf7 111 SUPERFAMILY SSF52788 2 107 9.68E-20 T 16-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily BER92_RS01765 7eec27acf5cc726a7a1855e1cd44dcf7 111 Gene3D G3DSA:3.40.50.270 2 36 6.9E-7 T 16-09-2016 BER92_RS01765 7eec27acf5cc726a7a1855e1cd44dcf7 111 Gene3D G3DSA:3.40.50.270 41 79 6.9E-4 T 16-09-2016 BER92_RS01765 7eec27acf5cc726a7a1855e1cd44dcf7 111 SMART SM00226 1 107 0.0074 T 16-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily BER92_RS01765 7eec27acf5cc726a7a1855e1cd44dcf7 111 PIRSF PIRSF029416 1 108 2.8E-50 T 16-09-2016 IPR016919 Uncharacterised conserved protein UCP029416, tyrosine-protein phosphatase, Mlr4629 BER92_RS07025 3643cfffc39c86128785b056ddd05164 250 SUPERFAMILY SSF53167 7 248 3.56E-73 T 16-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BER92_RS07025 3643cfffc39c86128785b056ddd05164 250 Gene3D G3DSA:3.40.50.1580 6 247 4.6E-72 T 16-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BER92_RS07025 3643cfffc39c86128785b056ddd05164 250 PANTHER PTHR11904:SF1 9 249 3.1E-83 T 16-09-2016 BER92_RS07025 3643cfffc39c86128785b056ddd05164 250 Pfam PF01048 Phosphorylase superfamily 8 242 1.0E-37 T 16-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BER92_RS07025 3643cfffc39c86128785b056ddd05164 250 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 6 250 32.868 T 16-09-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 BER92_RS07025 3643cfffc39c86128785b056ddd05164 250 PANTHER PTHR11904 9 249 3.1E-83 T 16-09-2016 IPR001369 PNP/MTAP phosphorylase BER92_RS07025 3643cfffc39c86128785b056ddd05164 250 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 54 94 - T 16-09-2016 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 BER92_RS10175 d7d03d2701a8815ce1c427b34dc2a631 152 Pfam PF00293 NUDIX domain 12 119 1.4E-14 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS10175 d7d03d2701a8815ce1c427b34dc2a631 152 Gene3D G3DSA:3.90.79.10 7 148 2.5E-31 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS10175 d7d03d2701a8815ce1c427b34dc2a631 152 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 16-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BER92_RS10175 d7d03d2701a8815ce1c427b34dc2a631 152 SUPERFAMILY SSF55811 7 145 6.5E-29 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS10175 d7d03d2701a8815ce1c427b34dc2a631 152 PANTHER PTHR22769 7 119 1.2E-19 T 16-09-2016 BER92_RS01135 31c3ad8489867f76d45deb6ed4aabfcf 290 SUPERFAMILY SSF51556 3 277 5.24E-64 T 16-09-2016 IPR032466 Metal-dependent hydrolase BER92_RS01135 31c3ad8489867f76d45deb6ed4aabfcf 290 Pfam PF04909 Amidohydrolase 4 277 9.0E-37 T 16-09-2016 IPR006680 Amidohydrolase-related GO:0016787 BER92_RS01135 31c3ad8489867f76d45deb6ed4aabfcf 290 Gene3D G3DSA:3.20.20.140 1 280 2.2E-68 T 16-09-2016 BER92_RS01135 31c3ad8489867f76d45deb6ed4aabfcf 290 PANTHER PTHR21240 1 287 3.4E-67 T 16-09-2016 BER92_RS01135 31c3ad8489867f76d45deb6ed4aabfcf 290 PANTHER PTHR21240:SF1 1 287 3.4E-67 T 16-09-2016 BER92_RS15745 aeb7775ce0e32cfdbe9caa0f11b5604b 117 SUPERFAMILY SSF55620 3 117 6.67E-40 T 16-09-2016 BER92_RS15745 aeb7775ce0e32cfdbe9caa0f11b5604b 117 PIRSF PIRSF006113 1 117 3.7E-48 T 16-09-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein BER92_RS15745 aeb7775ce0e32cfdbe9caa0f11b5604b 117 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 116 3.5E-35 T 16-09-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein BER92_RS15745 aeb7775ce0e32cfdbe9caa0f11b5604b 117 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 3 94 7.3E-33 T 16-09-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein BER92_RS15745 aeb7775ce0e32cfdbe9caa0f11b5604b 117 Gene3D G3DSA:3.30.479.10 1 116 8.4E-40 T 16-09-2016 BER92_RS15745 aeb7775ce0e32cfdbe9caa0f11b5604b 117 PANTHER PTHR12589 1 117 1.6E-49 T 16-09-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein BER92_RS10975 f5aaa20f96fe048e7f2425afd6de40db 160 SUPERFAMILY SSF52833 13 157 1.79E-43 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS10975 f5aaa20f96fe048e7f2425afd6de40db 160 Pfam PF00578 AhpC/TSA family 10 136 7.2E-30 T 16-09-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 BER92_RS10975 f5aaa20f96fe048e7f2425afd6de40db 160 Gene3D G3DSA:3.40.30.10 20 156 1.8E-40 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS10975 f5aaa20f96fe048e7f2425afd6de40db 160 PANTHER PTHR10681 22 156 5.5E-32 T 16-09-2016 BER92_RS19130 ead92d93d1f24fb8fc85934ebd4bb203 453 Gene3D G3DSA:1.20.1250.20 249 445 4.5E-15 T 16-09-2016 BER92_RS19130 ead92d93d1f24fb8fc85934ebd4bb203 453 Pfam PF00083 Sugar (and other) transporter 33 438 1.8E-31 T 16-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BER92_RS19130 ead92d93d1f24fb8fc85934ebd4bb203 453 Gene3D G3DSA:1.20.1250.20 32 225 1.8E-20 T 16-09-2016 BER92_RS19130 ead92d93d1f24fb8fc85934ebd4bb203 453 PANTHER PTHR23508:SF4 21 453 2.0E-256 T 16-09-2016 BER92_RS19130 ead92d93d1f24fb8fc85934ebd4bb203 453 SUPERFAMILY SSF103473 30 442 1.44E-52 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS19130 ead92d93d1f24fb8fc85934ebd4bb203 453 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 16-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BER92_RS19130 ead92d93d1f24fb8fc85934ebd4bb203 453 PANTHER PTHR23508 21 453 2.0E-256 T 16-09-2016 BER92_RS19130 ead92d93d1f24fb8fc85934ebd4bb203 453 ProSitePatterns PS00216 Sugar transport proteins signature 1. 309 326 - T 16-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 SUPERFAMILY SSF52402 212 486 4.75E-74 T 16-09-2016 BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 PANTHER PTHR11772:SF11 2 546 3.9E-280 T 16-09-2016 BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 Gene3D G3DSA:3.60.20.10 1 194 1.7E-60 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 SMART SM01172 5 210 0.0078 T 16-09-2016 IPR024286 Domain of unknown function DUF3700 BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 Gene3D G3DSA:3.40.50.620 195 519 2.3E-112 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 PANTHER PTHR11772 2 546 3.9E-280 T 16-09-2016 BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 Pfam PF13537 Glutamine amidotransferase domain 50 169 1.3E-39 T 16-09-2016 IPR017932 Glutamine amidotransferase type 2 domain BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 Pfam PF00733 Asparagine synthase 214 370 1.1E-55 T 16-09-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 SUPERFAMILY SSF56235 1 199 4.72E-55 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS06500 795ccfbdf1ac9bed3f47b86174ba554e 564 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 375 1.3E-106 T 16-09-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 BER92_RS04845 3cc84b357d03ef32781e78cb272ab87e 76 Pfam PF09413 Putative prokaryotic signal transducing protein 1 66 3.7E-12 T 16-09-2016 IPR018551 Domain of unknown function DUF2007 BER92_RS04845 3cc84b357d03ef32781e78cb272ab87e 76 Gene3D G3DSA:3.30.70.790 6 70 3.9E-4 T 16-09-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 BER92_RS05930 a820466948a4634a233ec7bc0da0b96c 170 PANTHER PTHR33692 1 170 1.6E-54 T 16-09-2016 BER92_RS05930 a820466948a4634a233ec7bc0da0b96c 170 SUPERFAMILY SSF50346 101 170 1.31E-17 T 16-09-2016 IPR011033 PRC-barrel-like BER92_RS05930 a820466948a4634a233ec7bc0da0b96c 170 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 169 8.5E-52 T 16-09-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 BER92_RS05930 a820466948a4634a233ec7bc0da0b96c 170 Gene3D G3DSA:2.40.30.60 1 95 4.7E-26 T 16-09-2016 IPR002676 RimM protein GO:0006364 BER92_RS05930 a820466948a4634a233ec7bc0da0b96c 170 Pfam PF05239 PRC-barrel domain 98 164 3.4E-6 T 16-09-2016 IPR027275 PRC-barrel domain BER92_RS05930 a820466948a4634a233ec7bc0da0b96c 170 Pfam PF01782 RimM N-terminal domain 10 92 6.5E-21 T 16-09-2016 IPR002676 RimM protein GO:0006364 BER92_RS05930 a820466948a4634a233ec7bc0da0b96c 170 Gene3D G3DSA:2.30.30.240 101 170 3.2E-24 T 16-09-2016 BER92_RS05930 a820466948a4634a233ec7bc0da0b96c 170 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 7 170 23.067 T 16-09-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 BER92_RS05930 a820466948a4634a233ec7bc0da0b96c 170 SUPERFAMILY SSF50447 8 95 9.89E-19 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS07430 10060516832b39a458301f71efd4c980 331 SUPERFAMILY SSF54523 12 98 8.63E-5 T 16-09-2016 BER92_RS07430 10060516832b39a458301f71efd4c980 331 Pfam PF16074 Type IV Pilus-assembly protein W 232 301 1.1E-7 T 16-09-2016 IPR032092 Type IV Pilus-assembly protein W GO:0043683 BER92_RS07430 10060516832b39a458301f71efd4c980 331 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS18250 bc71130adddf5722e98400d29946567a 333 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 11 320 1.5E-96 T 16-09-2016 IPR016833 Putative sodium bile acid cotransporter BER92_RS18250 bc71130adddf5722e98400d29946567a 333 PIRSF PIRSF026166 1 333 8.6E-131 T 16-09-2016 IPR016833 Putative sodium bile acid cotransporter BER92_RS18250 bc71130adddf5722e98400d29946567a 333 PANTHER PTHR18640 1 320 8.2E-114 T 16-09-2016 IPR016833 Putative sodium bile acid cotransporter BER92_RS18250 bc71130adddf5722e98400d29946567a 333 PANTHER PTHR18640:SF9 1 320 8.2E-114 T 16-09-2016 BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 PANTHER PTHR10516 201 321 2.3E-45 T 16-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 Gene3D G3DSA:3.10.50.40 205 321 4.7E-47 T 16-09-2016 BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 PANTHER PTHR10516:SF320 201 321 2.3E-45 T 16-09-2016 BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 131 223 4.6E-20 T 16-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 40 112 2.3E-8 T 16-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 SUPERFAMILY SSF54534 158 322 5.3E-50 T 16-09-2016 BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 Gene3D G3DSA:1.10.287.460 127 204 3.0E-18 T 16-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 Gene3D G3DSA:1.10.287.460 43 109 3.1E-19 T 16-09-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 PANTHER PTHR10516 145 162 2.3E-45 T 16-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 231 318 1.8E-25 T 16-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 BER92_RS08135 742c8176e2a53ef94ad4a73f1c7d2c6a 323 PANTHER PTHR10516:SF320 145 162 2.3E-45 T 16-09-2016 BER92_RS08740 e7cbfbdff8aeb32bbef136d6dd93c9d3 277 SUPERFAMILY SSF51569 2 269 6.14E-107 T 16-09-2016 BER92_RS08740 e7cbfbdff8aeb32bbef136d6dd93c9d3 277 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 13 268 3.3E-129 T 16-09-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 BER92_RS08740 e7cbfbdff8aeb32bbef136d6dd93c9d3 277 PANTHER PTHR21057 1 277 1.5E-171 T 16-09-2016 BER92_RS08740 e7cbfbdff8aeb32bbef136d6dd93c9d3 277 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 8 270 53.302 T 16-09-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 BER92_RS08740 e7cbfbdff8aeb32bbef136d6dd93c9d3 277 Gene3D G3DSA:3.20.20.70 12 271 3.8E-116 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS08740 e7cbfbdff8aeb32bbef136d6dd93c9d3 277 Pfam PF00793 DAHP synthetase I family 6 266 3.7E-67 T 16-09-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 BER92_RS08740 e7cbfbdff8aeb32bbef136d6dd93c9d3 277 PANTHER PTHR21057:SF2 1 277 1.5E-171 T 16-09-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 Gene3D G3DSA:1.10.8.60 273 340 2.6E-27 T 16-09-2016 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 353 419 1.5E-29 T 16-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 SUPERFAMILY SSF52540 107 318 1.85E-38 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 Gene3D G3DSA:3.40.50.300 101 271 9.7E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 PANTHER PTHR30050 1 442 8.9E-213 T 16-09-2016 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 172 186 4.0E-46 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 204 218 4.0E-46 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 140 160 4.0E-46 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 400 419 4.0E-46 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 238 265 4.0E-46 T 16-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 SMART SM00382 139 270 6.0E-5 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 4 440 3.7E-163 T 16-09-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 ProSitePatterns PS01008 DnaA protein signature. 400 419 - T 16-09-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 Pfam PF00308 Bacterial dnaA protein 106 324 2.7E-84 T 16-09-2016 IPR013317 Chromosomal replication initiator protein DnaA BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 SMART SM00760 350 419 1.5E-38 T 16-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 Pfam PF11638 DnaA N-terminal domain 1 62 6.9E-15 T 16-09-2016 IPR024633 DnaA N-terminal domain BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 SUPERFAMILY SSF48295 339 441 3.4E-35 T 16-09-2016 IPR010921 Trp repressor/replication initiator GO:0043565 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 PANTHER PTHR30050:SF2 1 442 8.9E-213 T 16-09-2016 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 Gene3D G3DSA:1.10.1750.10 341 441 1.4E-39 T 16-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BER92_RS00005 8fb37598d237c1aba3188d7049ca3272 442 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 441 31.907 T 16-09-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BER92_RS04155 82ac0f0b41042fbf8dfbf2838a87e80b 288 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 203 278 2.4E-18 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS04155 82ac0f0b41042fbf8dfbf2838a87e80b 288 Gene3D G3DSA:3.30.1150.10 177 282 1.5E-22 T 16-09-2016 BER92_RS04155 82ac0f0b41042fbf8dfbf2838a87e80b 288 PANTHER PTHR33446:SF2 18 269 7.2E-16 T 16-09-2016 BER92_RS04155 82ac0f0b41042fbf8dfbf2838a87e80b 288 PANTHER PTHR33446 18 269 7.2E-16 T 16-09-2016 BER92_RS04155 82ac0f0b41042fbf8dfbf2838a87e80b 288 SUPERFAMILY SSF74653 175 282 1.18E-19 T 16-09-2016 BER92_RS04155 82ac0f0b41042fbf8dfbf2838a87e80b 288 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 201 269 1.0E-14 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 Gene3D G3DSA:3.40.30.10 672 773 1.5E-10 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 Pfam PF13899 Thioredoxin-like 674 752 1.5E-12 T 16-09-2016 BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 PANTHER PTHR32234 335 775 1.4E-272 T 16-09-2016 BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 Gene3D G3DSA:2.60.40.1250 201 319 7.8E-34 T 16-09-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 Gene3D G3DSA:2.60.40.1250 28 150 2.1E-42 T 16-09-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 PANTHER PTHR32234:SF3 178 305 1.4E-272 T 16-09-2016 BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 SUPERFAMILY SSF74863 30 147 3.4E-34 T 16-09-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 PANTHER PTHR32234 178 305 1.4E-272 T 16-09-2016 BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 PANTHER PTHR32234 1 154 1.4E-272 T 16-09-2016 BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 SUPERFAMILY SSF74863 201 317 4.97E-30 T 16-09-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 388 568 6.1E-11 T 16-09-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 Pfam PF11412 Disulphide bond corrector protein DsbC 201 316 1.3E-30 T 16-09-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 Pfam PF11412 Disulphide bond corrector protein DsbC 32 146 2.6E-34 T 16-09-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 ProSitePatterns PS00194 Thioredoxin family active site. 685 703 - T 16-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 SUPERFAMILY SSF52833 674 757 3.5E-11 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 PANTHER PTHR32234:SF3 335 775 1.4E-272 T 16-09-2016 BER92_RS17530 34f1212ed6199518f375c8cb85701933 777 PANTHER PTHR32234:SF3 1 154 1.4E-272 T 16-09-2016 BER92_RS02150 93c2ad18a778009c7e7d15a73f06de6f 293 SUPERFAMILY SSF75217 117 286 2.16E-30 T 16-09-2016 IPR029028 Alpha/beta knot methyltransferases BER92_RS02150 93c2ad18a778009c7e7d15a73f06de6f 293 SMART SM00967 52 127 2.3E-12 T 16-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 BER92_RS02150 93c2ad18a778009c7e7d15a73f06de6f 293 PANTHER PTHR12029:SF57 47 284 4.4E-103 T 16-09-2016 BER92_RS02150 93c2ad18a778009c7e7d15a73f06de6f 293 PANTHER PTHR12029 47 284 4.4E-103 T 16-09-2016 BER92_RS02150 93c2ad18a778009c7e7d15a73f06de6f 293 Gene3D G3DSA:3.40.1280.10 139 284 7.7E-36 T 16-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER92_RS02150 93c2ad18a778009c7e7d15a73f06de6f 293 Gene3D G3DSA:3.30.1330.30 51 121 1.1E-13 T 16-09-2016 IPR029064 50S ribosomal protein L30e-like BER92_RS02150 93c2ad18a778009c7e7d15a73f06de6f 293 SUPERFAMILY SSF55315 50 121 1.13E-10 T 16-09-2016 IPR029064 50S ribosomal protein L30e-like BER92_RS02150 93c2ad18a778009c7e7d15a73f06de6f 293 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 53 121 2.9E-12 T 16-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 BER92_RS02150 93c2ad18a778009c7e7d15a73f06de6f 293 Pfam PF00588 SpoU rRNA Methylase family 142 280 1.8E-28 T 16-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 SUPERFAMILY SSF47413 13 72 1.88E-14 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 Gene3D G3DSA:3.40.50.2300 189 326 1.2E-47 T 16-09-2016 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 PANTHER PTHR30146 13 343 9.9E-174 T 16-09-2016 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 Gene3D G3DSA:1.10.260.40 15 65 4.8E-20 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 Gene3D G3DSA:3.40.50.2300 66 188 3.1E-30 T 16-09-2016 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 PANTHER PTHR30146:SF44 13 343 9.9E-174 T 16-09-2016 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 SMART SM00354 13 83 8.4E-15 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 Pfam PF13377 Periplasmic binding protein-like domain 185 342 2.4E-37 T 16-09-2016 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 16 34 - T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 16 58 2.4E-11 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS03155 263352ef3aa2efbf2236912a4842ea18 343 SUPERFAMILY SSF53822 87 342 6.28E-58 T 16-09-2016 IPR028082 Periplasmic binding protein-like I BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 Pfam PF01266 FAD dependent oxidoreductase 43 393 5.0E-49 T 16-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 Gene3D G3DSA:3.50.50.60 185 264 1.5E-47 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 Gene3D G3DSA:3.50.50.60 31 132 1.5E-47 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 Gene3D G3DSA:3.50.50.60 357 409 1.5E-47 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 SUPERFAMILY SSF51905 42 265 6.47E-40 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 SUPERFAMILY SSF51905 357 431 6.47E-40 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 PANTHER PTHR13847 2 435 1.3E-211 T 16-09-2016 BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 PANTHER PTHR13847:SF210 2 435 1.3E-211 T 16-09-2016 BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 306 321 7.9E-5 T 16-09-2016 BER92_RS07510 7a6b8af89d0c7017e90bf77a8414b30f 438 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 43 65 7.9E-5 T 16-09-2016 BER92_RS18065 5214e00a16181420391750019b083469 109 SUPERFAMILY SSF46565 10 109 9.03E-22 T 16-09-2016 IPR001623 DnaJ domain BER92_RS18065 5214e00a16181420391750019b083469 109 Gene3D G3DSA:1.10.287.110 46 109 6.9E-17 T 16-09-2016 IPR001623 DnaJ domain BER92_RS18065 5214e00a16181420391750019b083469 109 SMART SM00271 45 108 1.8E-15 T 16-09-2016 IPR001623 DnaJ domain BER92_RS18065 5214e00a16181420391750019b083469 109 PRINTS PR00625 DnaJ domain signature 88 108 8.7E-10 T 16-09-2016 IPR001623 DnaJ domain BER92_RS18065 5214e00a16181420391750019b083469 109 PRINTS PR00625 DnaJ domain signature 66 81 8.7E-10 T 16-09-2016 IPR001623 DnaJ domain BER92_RS18065 5214e00a16181420391750019b083469 109 PRINTS PR00625 DnaJ domain signature 48 66 8.7E-10 T 16-09-2016 IPR001623 DnaJ domain BER92_RS18065 5214e00a16181420391750019b083469 109 Pfam PF00226 DnaJ domain 46 109 8.6E-13 T 16-09-2016 IPR001623 DnaJ domain BER92_RS13530 6648761848ea04faae89ef98fc51d43b 228 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 228 47.144 T 16-09-2016 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 BER92_RS13530 6648761848ea04faae89ef98fc51d43b 228 PANTHER PTHR41536:SF1 2 228 1.1E-130 T 16-09-2016 BER92_RS13530 6648761848ea04faae89ef98fc51d43b 228 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 178 2.8E-14 T 16-09-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 BER92_RS13530 6648761848ea04faae89ef98fc51d43b 228 PANTHER PTHR41536 2 228 1.1E-130 T 16-09-2016 BER92_RS13530 6648761848ea04faae89ef98fc51d43b 228 SUPERFAMILY SSF51197 3 179 2.47E-6 T 16-09-2016 BER92_RS13530 6648761848ea04faae89ef98fc51d43b 228 SMART SM00702 1 179 1.4E-24 T 16-09-2016 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 BER92_RS04510 7753f08280be150ad2296d09f37a1c8d 322 PANTHER PTHR35604:SF2 2 322 2.3E-243 T 16-09-2016 BER92_RS04510 7753f08280be150ad2296d09f37a1c8d 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.4E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS04510 7753f08280be150ad2296d09f37a1c8d 322 Pfam PF01609 Transposase DDE domain 135 310 5.0E-33 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS04510 7753f08280be150ad2296d09f37a1c8d 322 PANTHER PTHR35604 2 322 2.3E-243 T 16-09-2016 BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 SUPERFAMILY SSF90123 19 327 3.01E-72 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 Gene3D G3DSA:1.20.1560.10 20 327 8.1E-75 T 16-09-2016 BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 PANTHER PTHR24221 11 589 1.8E-238 T 16-09-2016 BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 SUPERFAMILY SSF52540 339 586 3.48E-88 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 14 586 3.6E-260 T 16-09-2016 IPR011918 ABC transporter, ATP-binding/permease protein BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 Pfam PF00005 ABC transporter 366 515 3.5E-32 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 Pfam PF00664 ABC transporter transmembrane region 34 296 1.1E-48 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 SMART SM00382 375 561 5.9E-20 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS08020 3a6623a56f66ed0878fa49b0bd14d6a5 589 Gene3D G3DSA:3.40.50.300 347 579 7.2E-86 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 PANTHER PTHR11908 597 768 1.6E-272 T 16-09-2016 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 SUPERFAMILY SSF56003 182 768 1.96E-153 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 PANTHER PTHR11908:SF95 22 566 1.6E-272 T 16-09-2016 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 Gene3D G3DSA:3.30.365.10 465 608 4.5E-30 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 Gene3D G3DSA:3.90.1170.50 27 155 9.5E-34 T 16-09-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 46 155 1.4E-22 T 16-09-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 Gene3D G3DSA:3.30.365.10 308 369 3.0E-6 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 Gene3D G3DSA:3.30.365.10 188 201 3.0E-6 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 PANTHER PTHR11908 22 566 1.6E-272 T 16-09-2016 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 PANTHER PTHR11908:SF95 597 768 1.6E-272 T 16-09-2016 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 188 710 1.1E-104 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 SUPERFAMILY SSF54665 28 165 3.53E-38 T 16-09-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 Gene3D G3DSA:3.30.365.10 381 464 8.4E-54 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 Gene3D G3DSA:3.30.365.10 627 768 8.4E-54 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 Gene3D G3DSA:3.30.365.10 202 306 2.5E-29 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS14280 5367f5ad39fa8b7ddd8887456679239d 770 SMART SM01008 46 160 2.6E-39 T 16-09-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PANTHER PTHR22912:SF48 1 319 5.1E-160 T 16-09-2016 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 13 318 3.4E-116 T 16-09-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 302 1.5E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PANTHER PTHR22912 1 319 5.1E-160 T 16-09-2016 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 3.2E-37 T 16-09-2016 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 3.2E-37 T 16-09-2016 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 3.2E-37 T 16-09-2016 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 293 3.2E-37 T 16-09-2016 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 241 257 3.2E-37 T 16-09-2016 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 Gene3D G3DSA:3.50.50.60 282 320 5.0E-7 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 Gene3D G3DSA:3.50.50.60 117 134 5.0E-7 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 141 161 - T 16-09-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 Gene3D G3DSA:3.50.50.60 135 249 2.1E-32 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 SUPERFAMILY SSF51905 8 319 1.38E-53 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 13 35 1.1E-72 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 134 146 1.1E-72 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 120 1.1E-72 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 204 220 1.1E-72 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 149 173 1.1E-72 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 243 264 1.1E-72 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 46 61 1.1E-72 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 281 299 1.1E-72 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 67 77 1.1E-72 T 16-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BER92_RS10145 68aabf2caf66f2e54b6b507b76753b89 322 Gene3D G3DSA:3.50.50.60 10 116 6.4E-33 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS03885 03f0d3e9df3e5619fcd2d53f23eed8c4 203 SUPERFAMILY SSF52540 1 184 3.49E-32 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03885 03f0d3e9df3e5619fcd2d53f23eed8c4 203 PANTHER PTHR10695 1 186 1.8E-62 T 16-09-2016 BER92_RS03885 03f0d3e9df3e5619fcd2d53f23eed8c4 203 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 3 199 25.768 T 16-09-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 BER92_RS03885 03f0d3e9df3e5619fcd2d53f23eed8c4 203 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 5 185 1.8E-48 T 16-09-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 BER92_RS03885 03f0d3e9df3e5619fcd2d53f23eed8c4 203 Pfam PF01121 Dephospho-CoA kinase 5 180 2.1E-56 T 16-09-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 BER92_RS03885 03f0d3e9df3e5619fcd2d53f23eed8c4 203 Gene3D G3DSA:3.40.50.300 4 195 3.0E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14915 9e5955f2e7772b5aeafe9d3efdf5ef5d 409 SUPERFAMILY SSF56219 39 112 2.4E-21 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS14915 9e5955f2e7772b5aeafe9d3efdf5ef5d 409 SUPERFAMILY SSF56219 144 406 2.4E-21 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS14915 9e5955f2e7772b5aeafe9d3efdf5ef5d 409 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 43 399 4.2E-39 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS14915 9e5955f2e7772b5aeafe9d3efdf5ef5d 409 Gene3D G3DSA:3.60.10.10 33 101 1.6E-6 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS14915 9e5955f2e7772b5aeafe9d3efdf5ef5d 409 Gene3D G3DSA:3.60.10.10 243 301 1.6E-6 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS14915 9e5955f2e7772b5aeafe9d3efdf5ef5d 409 Gene3D G3DSA:3.60.10.10 148 183 1.6E-6 T 16-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 SMART SM00448 2 116 6.0E-20 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 SUPERFAMILY SSF52172 1 133 2.42E-26 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 PANTHER PTHR26402 2 208 1.3E-100 T 16-09-2016 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 PANTHER PTHR26402:SF474 2 208 1.3E-100 T 16-09-2016 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 Pfam PF00072 Response regulator receiver domain 5 114 3.6E-21 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 9.2E-19 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 Gene3D G3DSA:3.40.50.2300 2 127 1.5E-29 T 16-09-2016 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.3E-10 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.3E-10 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.3E-10 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 Gene3D G3DSA:1.10.10.10 137 206 4.2E-24 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 SMART SM00421 147 204 1.4E-23 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS01145 54607ddb5b84046f0586d0ab73b4a723 222 SUPERFAMILY SSF46894 141 206 3.13E-19 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 Gene3D G3DSA:1.10.150.130 26 118 7.0E-23 T 16-09-2016 IPR023109 Integrase/recombinase, N-terminal BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 23 323 61.563 T 16-09-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 28 322 9.1E-111 T 16-09-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 Pfam PF00589 Phage integrase family 131 308 4.8E-45 T 16-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 Gene3D G3DSA:1.10.443.10 130 314 4.3E-54 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 SUPERFAMILY SSF56349 125 321 2.94E-54 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 23 323 29.414 T 16-09-2016 IPR023009 Tyrosine recombinase XerC/XerD BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 27 107 2.3E-15 T 16-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 SUPERFAMILY SSF47823 23 119 3.92E-31 T 16-09-2016 IPR010998 Integrase, Lambda-type, N-terminal BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 PANTHER PTHR30349:SF5 27 322 4.7E-111 T 16-09-2016 BER92_RS04325 560a2960db643f24bd7cf84757d95914 323 PANTHER PTHR30349 27 322 4.7E-111 T 16-09-2016 BER92_RS16920 f9fa5b2bf3e02893e8ce2944adef6466 204 SMART SM00382 22 203 9.3E-10 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS16920 f9fa5b2bf3e02893e8ce2944adef6466 204 PANTHER PTHR24220:SF284 1 204 1.2E-87 T 16-09-2016 BER92_RS16920 f9fa5b2bf3e02893e8ce2944adef6466 204 PANTHER PTHR24220 1 204 1.2E-87 T 16-09-2016 BER92_RS16920 f9fa5b2bf3e02893e8ce2944adef6466 204 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS16920 f9fa5b2bf3e02893e8ce2944adef6466 204 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 3 203 3.8E-86 T 16-09-2016 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 BER92_RS16920 f9fa5b2bf3e02893e8ce2944adef6466 204 Gene3D G3DSA:3.40.50.300 23 203 6.4E-52 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16920 f9fa5b2bf3e02893e8ce2944adef6466 204 Pfam PF00005 ABC transporter 23 157 1.4E-30 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS16920 f9fa5b2bf3e02893e8ce2944adef6466 204 SUPERFAMILY SSF52540 6 203 2.54E-55 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05465 883ee3ea678028cfe09ee8555ab1ff0a 126 Pfam PF12553 Protein of unknown function (DUF3742) 1 121 1.9E-34 T 16-09-2016 IPR022213 Protein of unknown function DUF3742 BER92_RS02010 47db7d4fe909ad30fcfd2706d95aab89 148 SUPERFAMILY SSF55811 7 139 1.9E-31 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS02010 47db7d4fe909ad30fcfd2706d95aab89 148 Gene3D G3DSA:3.90.79.10 5 139 9.2E-32 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS02010 47db7d4fe909ad30fcfd2706d95aab89 148 Pfam PF00293 NUDIX domain 9 128 1.2E-21 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS02010 47db7d4fe909ad30fcfd2706d95aab89 148 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 16-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BER92_RS02010 47db7d4fe909ad30fcfd2706d95aab89 148 PANTHER PTHR22769 7 138 8.0E-28 T 16-09-2016 BER92_RS02010 47db7d4fe909ad30fcfd2706d95aab89 148 PRINTS PR00502 NUDIX hydrolase family signature 38 52 9.0E-7 T 16-09-2016 IPR020476 NUDIX hydrolase BER92_RS02010 47db7d4fe909ad30fcfd2706d95aab89 148 PRINTS PR00502 NUDIX hydrolase family signature 52 67 9.0E-7 T 16-09-2016 IPR020476 NUDIX hydrolase BER92_RS14000 1b72c1db9497daf81f2a1f444fb4a836 79 SUPERFAMILY SSF47336 2 77 1.57E-23 T 16-09-2016 IPR009081 Phosphopantetheine binding ACP domain BER92_RS14000 1b72c1db9497daf81f2a1f444fb4a836 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 8.0E-4 T 16-09-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 BER92_RS14000 1b72c1db9497daf81f2a1f444fb4a836 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 16-09-2016 IPR006162 Phosphopantetheine attachment site BER92_RS14000 1b72c1db9497daf81f2a1f444fb4a836 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.661 T 16-09-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 BER92_RS14000 1b72c1db9497daf81f2a1f444fb4a836 79 Pfam PF00550 Phosphopantetheine attachment site 6 73 3.4E-16 T 16-09-2016 IPR009081 Phosphopantetheine binding ACP domain BER92_RS14000 1b72c1db9497daf81f2a1f444fb4a836 79 PANTHER PTHR20863 4 73 5.6E-30 T 16-09-2016 BER92_RS14000 1b72c1db9497daf81f2a1f444fb4a836 79 Gene3D G3DSA:1.10.1200.10 3 77 7.5E-36 T 16-09-2016 IPR009081 Phosphopantetheine binding ACP domain BER92_RS14000 1b72c1db9497daf81f2a1f444fb4a836 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 75 4.5E-36 T 16-09-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 BER92_RS01140 b909c1b0d4413c6626a63df6ec176d9d 335 PANTHER PTHR11732:SF241 110 142 1.4E-125 T 16-09-2016 BER92_RS01140 b909c1b0d4413c6626a63df6ec176d9d 335 PANTHER PTHR11732:SF241 3 94 1.4E-125 T 16-09-2016 BER92_RS01140 b909c1b0d4413c6626a63df6ec176d9d 335 SUPERFAMILY SSF51430 6 324 9.95E-63 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS01140 b909c1b0d4413c6626a63df6ec176d9d 335 PANTHER PTHR11732 110 142 1.4E-125 T 16-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta BER92_RS01140 b909c1b0d4413c6626a63df6ec176d9d 335 PANTHER PTHR11732 3 94 1.4E-125 T 16-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta BER92_RS01140 b909c1b0d4413c6626a63df6ec176d9d 335 Gene3D G3DSA:3.20.20.100 4 323 3.3E-52 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS01140 b909c1b0d4413c6626a63df6ec176d9d 335 PANTHER PTHR11732 159 335 1.4E-125 T 16-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta BER92_RS01140 b909c1b0d4413c6626a63df6ec176d9d 335 PANTHER PTHR11732:SF241 159 335 1.4E-125 T 16-09-2016 BER92_RS01140 b909c1b0d4413c6626a63df6ec176d9d 335 Pfam PF00248 Aldo/keto reductase family 18 323 6.3E-44 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 PANTHER PTHR11695 12 106 7.1E-168 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 PANTHER PTHR11695 127 265 7.1E-168 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 SUPERFAMILY SSF51735 164 349 2.27E-59 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 PANTHER PTHR11695:SF281 287 387 7.1E-168 T 16-09-2016 BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 152 2.1E-28 T 16-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 16-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 Pfam PF00107 Zinc-binding dehydrogenase 197 280 3.4E-9 T 16-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 Gene3D G3DSA:3.40.50.720 189 329 1.4E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 PANTHER PTHR11695 287 387 7.1E-168 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 PANTHER PTHR11695:SF281 12 106 7.1E-168 T 16-09-2016 BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 PANTHER PTHR11695:SF281 127 265 7.1E-168 T 16-09-2016 BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 Gene3D G3DSA:3.90.180.10 1 188 3.1E-53 T 16-09-2016 IPR011032 GroES-like BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 SUPERFAMILY SSF50129 1 196 2.13E-56 T 16-09-2016 IPR011032 GroES-like BER92_RS17215 951f237fe261fe79915b3c802599e1a3 387 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 20 7.5E-9 T 16-09-2016 IPR027399 Alcohol dehydrogenase GroES-associated BER92_RS18745 5e1144ab95d1037a74bfb6a0c729a0a6 296 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 131 142 - T 16-09-2016 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 BER92_RS18745 5e1144ab95d1037a74bfb6a0c729a0a6 296 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 26 269 1.8E-103 T 16-09-2016 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158|UniPathway: UPA00139 BER92_RS18745 5e1144ab95d1037a74bfb6a0c729a0a6 296 Gene3D G3DSA:1.10.800.10 24 285 7.3E-95 T 16-09-2016 IPR001273 Aromatic amino acid hydroxylase GO:0004497|GO:0005506|GO:0009072|GO:0055114 BER92_RS18745 5e1144ab95d1037a74bfb6a0c729a0a6 296 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 33 250 1.3E-47 T 16-09-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 BER92_RS18745 5e1144ab95d1037a74bfb6a0c729a0a6 296 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 195 213 1.6E-13 T 16-09-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 BER92_RS18745 5e1144ab95d1037a74bfb6a0c729a0a6 296 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 227 246 1.6E-13 T 16-09-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 BER92_RS18745 5e1144ab95d1037a74bfb6a0c729a0a6 296 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 88 110 1.6E-13 T 16-09-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 BER92_RS18745 5e1144ab95d1037a74bfb6a0c729a0a6 296 SUPERFAMILY SSF56534 20 291 2.22E-100 T 16-09-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 BER92_RS18745 5e1144ab95d1037a74bfb6a0c729a0a6 296 PANTHER PTHR11473 29 246 1.2E-88 T 16-09-2016 IPR001273 Aromatic amino acid hydroxylase GO:0004497|GO:0005506|GO:0009072|GO:0055114 BER92_RS04330 5bd9640638df30c08f62f47a1bed5d91 266 SUPERFAMILY SSF52833 115 256 3.17E-36 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04330 5bd9640638df30c08f62f47a1bed5d91 266 Gene3D G3DSA:3.10.450.70 45 103 4.1E-18 T 16-09-2016 IPR009094 Disulphide bond isomerase, DsbC, N-terminal BER92_RS04330 5bd9640638df30c08f62f47a1bed5d91 266 Pfam PF13098 Thioredoxin-like domain 134 254 5.2E-25 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04330 5bd9640638df30c08f62f47a1bed5d91 266 PANTHER PTHR35272 14 264 9.7E-94 T 16-09-2016 BER92_RS04330 5bd9640638df30c08f62f47a1bed5d91 266 PANTHER PTHR35272:SF3 14 264 9.7E-94 T 16-09-2016 BER92_RS04330 5bd9640638df30c08f62f47a1bed5d91 266 SUPERFAMILY SSF54423 56 103 4.51E-10 T 16-09-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal BER92_RS04330 5bd9640638df30c08f62f47a1bed5d91 266 Pfam PF10411 Disulfide bond isomerase protein N-terminus 50 102 8.8E-16 T 16-09-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal BER92_RS04330 5bd9640638df30c08f62f47a1bed5d91 266 Gene3D G3DSA:3.40.30.10 127 256 1.9E-42 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS13740 594c34170eddd65069a087d56a20f430 577 Gene3D G3DSA:3.40.50.300 87 201 2.1E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13740 594c34170eddd65069a087d56a20f430 577 Gene3D G3DSA:3.40.50.300 357 560 2.1E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13740 594c34170eddd65069a087d56a20f430 577 SUPERFAMILY SSF52540 94 558 4.66E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13740 594c34170eddd65069a087d56a20f430 577 PANTHER PTHR37937:SF1 2 576 4.7E-81 T 16-09-2016 BER92_RS13740 594c34170eddd65069a087d56a20f430 577 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 99 567 4.9E-89 T 16-09-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 BER92_RS13740 594c34170eddd65069a087d56a20f430 577 PANTHER PTHR37937 2 576 4.7E-81 T 16-09-2016 BER92_RS16695 b5323c5e18e6f45778987b804895e101 61 Gene3D G3DSA:3.40.630.30 1 41 1.1E-4 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 SUPERFAMILY SSF56420 2 167 5.1E-62 T 16-09-2016 IPR023635 Peptide deformylase BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 PANTHER PTHR10458 1 168 7.8E-103 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 PRINTS PR01576 Peptide deformylase signature 104 122 5.2E-38 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 PRINTS PR01576 Peptide deformylase signature 36 65 5.2E-38 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 PRINTS PR01576 Peptide deformylase signature 123 152 5.2E-38 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 PRINTS PR01576 Peptide deformylase signature 92 103 5.2E-38 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 Gene3D G3DSA:3.90.45.10 4 167 3.7E-65 T 16-09-2016 IPR023635 Peptide deformylase BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 PANTHER PTHR10458:SF10 1 168 7.8E-103 T 16-09-2016 BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 Hamap MF_00163 Peptide deformylase [def]. 2 165 30.935 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 Pfam PF01327 Polypeptide deformylase 5 155 5.2E-52 T 16-09-2016 IPR023635 Peptide deformylase BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 162 1.1E-52 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS00990 190cc1ab0fe143b31979af50b06e05cc 170 PIRSF PIRSF004749 1 170 1.3E-57 T 16-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 BER92_RS18780 c1c19693d1d1d548fa247a9dfefec8e6 330 PANTHER PTHR33376:SF6 1 326 1.2E-190 T 16-09-2016 BER92_RS18780 c1c19693d1d1d548fa247a9dfefec8e6 330 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 45 282 8.5E-55 T 16-09-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 BER92_RS18780 c1c19693d1d1d548fa247a9dfefec8e6 330 PIRSF PIRSF006470 6 328 1.5E-71 T 16-09-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 BER92_RS18780 c1c19693d1d1d548fa247a9dfefec8e6 330 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 43 318 3.5E-68 T 16-09-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 BER92_RS18780 c1c19693d1d1d548fa247a9dfefec8e6 330 PANTHER PTHR33376 1 326 1.2E-190 T 16-09-2016 BER92_RS10460 304945aea8ca62657511079a7c3c2c08 294 SUPERFAMILY SSF52540 27 282 2.15E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10460 304945aea8ca62657511079a7c3c2c08 294 PANTHER PTHR13696:SF3 5 279 9.5E-125 T 16-09-2016 BER92_RS10460 304945aea8ca62657511079a7c3c2c08 294 PANTHER PTHR13696 5 279 9.5E-125 T 16-09-2016 BER92_RS10460 304945aea8ca62657511079a7c3c2c08 294 Gene3D G3DSA:3.40.50.300 27 266 1.7E-57 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10460 304945aea8ca62657511079a7c3c2c08 294 PIRSF PIRSF003092 2 291 5.8E-81 T 16-09-2016 IPR025501 ATP binding protein MinD BER92_RS10460 304945aea8ca62657511079a7c3c2c08 294 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 29 218 2.6E-26 T 16-09-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 TIGRFAM TIGR00595 priA: primosomal protein N' 220 737 4.2E-171 T 16-09-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 Hamap MF_00983 Probable primosomal protein N' [priA]. 10 739 23.332 T 16-09-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 PANTHER PTHR30580 1 740 9.8E-254 T 16-09-2016 BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 SUPERFAMILY SSF52540 499 612 8.51E-21 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 SUPERFAMILY SSF52540 406 433 8.51E-21 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 Pfam PF00271 Helicase conserved C-terminal domain 496 591 5.7E-7 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 Gene3D G3DSA:3.40.50.300 408 427 8.0E-26 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 Gene3D G3DSA:3.40.50.300 493 635 8.0E-26 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 Pfam PF00270 DEAD/DEAH box helicase 203 362 1.0E-12 T 16-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 SMART SM00487 195 391 2.5E-21 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 Gene3D G3DSA:3.40.50.300 197 379 5.5E-38 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 SUPERFAMILY SSF52540 195 374 5.06E-41 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00195 bfbbf8b2eaa42b2dff8aff43d3e50932 740 SMART SM00490 496 592 2.7E-10 T 16-09-2016 IPR001650 Helicase, C-terminal BER92_RS04995 f5c34a8c9363dfe1586fc626ea1d1ac8 425 PANTHER PTHR30213 1 415 6.2E-163 T 16-09-2016 BER92_RS04995 f5c34a8c9363dfe1586fc626ea1d1ac8 425 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 21 309 21.224 T 16-09-2016 IPR023679 Uncharacterised protein family UPF0761, bacterial BER92_RS04995 f5c34a8c9363dfe1586fc626ea1d1ac8 425 PANTHER PTHR30213:SF0 1 415 6.2E-163 T 16-09-2016 BER92_RS04995 f5c34a8c9363dfe1586fc626ea1d1ac8 425 Pfam PF03631 Virulence factor BrkB 33 279 4.6E-56 T 16-09-2016 IPR017039 Virulence factor BrkB BER92_RS04995 f5c34a8c9363dfe1586fc626ea1d1ac8 425 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 22 280 7.1E-72 T 16-09-2016 IPR017039 Virulence factor BrkB BER92_RS16315 e26b18a81f8430ed49747cc4bb539dcb 738 Pfam PF12805 FUSC-like inner membrane protein yccS 71 357 3.7E-102 T 16-09-2016 IPR032692 Integral membrane protein YccS, N-terminal BER92_RS16315 e26b18a81f8430ed49747cc4bb539dcb 738 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 716 3.7E-229 T 16-09-2016 IPR010020 Integral membrane protein, YccS/YhfK BER92_RS16315 e26b18a81f8430ed49747cc4bb539dcb 738 PANTHER PTHR30509:SF8 5 714 0.0 T 16-09-2016 BER92_RS16315 e26b18a81f8430ed49747cc4bb539dcb 738 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 13 716 1.2E-207 T 16-09-2016 IPR010019 Integral membrane protein, YccS BER92_RS16315 e26b18a81f8430ed49747cc4bb539dcb 738 PANTHER PTHR30509 5 714 0.0 T 16-09-2016 BER92_RS16315 e26b18a81f8430ed49747cc4bb539dcb 738 Pfam PF13515 Fusaric acid resistance protein-like 414 534 3.2E-21 T 16-09-2016 BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 Gene3D G3DSA:3.40.640.10 124 374 2.2E-33 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 Pfam PF00202 Aminotransferase class-III 84 486 1.7E-35 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 Gene3D G3DSA:3.90.1150.10 375 488 5.7E-14 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 PANTHER PTHR11986 1 13 4.7E-88 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 PANTHER PTHR11986 57 69 4.7E-88 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 SUPERFAMILY SSF53383 73 488 1.75E-53 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 PANTHER PTHR11986:SF17 85 494 4.7E-88 T 16-09-2016 BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 PANTHER PTHR11986:SF17 1 13 4.7E-88 T 16-09-2016 BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 PANTHER PTHR11986:SF17 57 69 4.7E-88 T 16-09-2016 BER92_RS12600 eb0ecb2852708715df29b427dab854c8 498 PANTHER PTHR11986 85 494 4.7E-88 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 SUPERFAMILY SSF51971 146 410 1.24E-65 T 16-09-2016 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 149 470 5.9E-27 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 7 483 1.6E-240 T 16-09-2016 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 Gene3D G3DSA:3.50.50.60 238 410 1.7E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 29 135 6.3E-36 T 16-09-2016 IPR028261 Dihydroprymidine dehydrogenase domain II BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 SUPERFAMILY SSF46548 7 158 1.41E-36 T 16-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 PANTHER PTHR11938:SF93 36 481 3.3E-259 T 16-09-2016 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 Gene3D G3DSA:3.40.50.720 414 489 1.8E-32 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 Gene3D G3DSA:3.40.50.720 152 237 1.8E-32 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 PRINTS PR00419 Adrenodoxin reductase family signature 172 185 6.7E-29 T 16-09-2016 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 PRINTS PR00419 Adrenodoxin reductase family signature 333 346 6.7E-29 T 16-09-2016 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 PRINTS PR00419 Adrenodoxin reductase family signature 299 313 6.7E-29 T 16-09-2016 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 PRINTS PR00419 Adrenodoxin reductase family signature 149 171 6.7E-29 T 16-09-2016 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 PANTHER PTHR11938 36 481 3.3E-259 T 16-09-2016 BER92_RS18905 1a8e87a118280c81a4d5f1316256eada 493 Gene3D G3DSA:1.10.1060.10 6 151 6.3E-41 T 16-09-2016 BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 249 269 1.4E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 184 1.4E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 213 1.4E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 232 1.4E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 133 1.4E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 46 63 1.4E-37 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 Gene3D G3DSA:3.40.50.720 40 285 4.6E-80 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PANTHER PTHR24322 49 178 2.6E-60 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 54 284 1.8E-61 T 16-09-2016 BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 181 209 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 133 4.9E-10 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 174 182 4.9E-10 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 194 213 4.9E-10 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PANTHER PTHR24322:SF105 49 178 2.6E-60 T 16-09-2016 BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PANTHER PTHR24322:SF105 194 226 2.6E-60 T 16-09-2016 BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 PANTHER PTHR24322 194 226 2.6E-60 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17175 fdb3931a338cb7f5b163339cbf3b474a 288 SUPERFAMILY SSF51735 43 285 1.68E-80 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00405 302683ac817882d22a210757acae0cf9 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 89 1.3E-7 T 16-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BER92_RS00405 302683ac817882d22a210757acae0cf9 326 Pfam PF00107 Zinc-binding dehydrogenase 151 269 2.3E-13 T 16-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BER92_RS00405 302683ac817882d22a210757acae0cf9 326 SMART SM00829 17 323 3.7E-5 T 16-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BER92_RS00405 302683ac817882d22a210757acae0cf9 326 SUPERFAMILY SSF50129 1 119 1.49E-27 T 16-09-2016 IPR011032 GroES-like BER92_RS00405 302683ac817882d22a210757acae0cf9 326 Gene3D G3DSA:3.90.180.10 1 142 3.4E-29 T 16-09-2016 IPR011032 GroES-like BER92_RS00405 302683ac817882d22a210757acae0cf9 326 Gene3D G3DSA:3.40.50.720 143 292 2.8E-37 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS00405 302683ac817882d22a210757acae0cf9 326 PANTHER PTHR11695 16 324 4.0E-70 T 16-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 BER92_RS00405 302683ac817882d22a210757acae0cf9 326 PANTHER PTHR11695:SF509 16 324 4.0E-70 T 16-09-2016 BER92_RS00405 302683ac817882d22a210757acae0cf9 326 SUPERFAMILY SSF51735 115 290 6.48E-39 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09725 8bb5847b4932f161a30776b89768272a 1219 Gene3D G3DSA:2.40.50.140 27 121 8.5E-34 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09725 8bb5847b4932f161a30776b89768272a 1219 Pfam PF10150 Ribonuclease E/G family 117 386 7.8E-96 T 16-09-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 BER92_RS09725 8bb5847b4932f161a30776b89768272a 1219 SMART SM00316 34 115 1.1E-9 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS09725 8bb5847b4932f161a30776b89768272a 1219 SUPERFAMILY SSF50249 37 121 8.9E-18 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09725 8bb5847b4932f161a30776b89768272a 1219 Pfam PF00575 S1 RNA binding domain 33 114 6.0E-12 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS09725 8bb5847b4932f161a30776b89768272a 1219 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 10 420 1.5E-162 T 16-09-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 BER92_RS09725 8bb5847b4932f161a30776b89768272a 1219 Hamap MF_00970 Ribonuclease E [rne]. 1 1203 34.692 T 16-09-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 BER92_RS09725 8bb5847b4932f161a30776b89768272a 1219 PANTHER PTHR30001 1 834 0.0 T 16-09-2016 BER92_RS09725 8bb5847b4932f161a30776b89768272a 1219 PANTHER PTHR30001:SF1 1 834 0.0 T 16-09-2016 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 PANTHER PTHR22777:SF8 1 86 2.9E-199 T 16-09-2016 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 Pfam PF00571 CBS domain 292 340 3.1E-6 T 16-09-2016 IPR000644 CBS domain BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 Gene3D G3DSA:3.30.465.10 334 435 1.1E-28 T 16-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 PANTHER PTHR22777:SF8 103 443 2.9E-199 T 16-09-2016 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 Pfam PF03471 Transporter associated domain 358 436 2.0E-20 T 16-09-2016 IPR005170 Transporter-associated domain BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 SUPERFAMILY SSF56176 355 442 3.54E-23 T 16-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 Gene3D G3DSA:3.10.580.10 208 333 5.8E-17 T 16-09-2016 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 Pfam PF01595 Domain of unknown function DUF21 5 207 3.1E-45 T 16-09-2016 IPR002550 Domain of unknown function DUF21 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 SUPERFAMILY SSF54631 209 341 9.32E-26 T 16-09-2016 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 SMART SM00116 231 280 21.0 T 16-09-2016 IPR000644 CBS domain BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 SMART SM00116 292 340 0.88 T 16-09-2016 IPR000644 CBS domain BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 PANTHER PTHR22777 103 443 2.9E-199 T 16-09-2016 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 PANTHER PTHR22777 1 86 2.9E-199 T 16-09-2016 BER92_RS08700 ebd276fa31aff370af01fbc3bd34b9c8 446 SMART SM01091 356 437 2.5E-31 T 16-09-2016 IPR005170 Transporter-associated domain BER92_RS18660 f45249f1926d365a5951012832661202 672 SMART SM00155 517 544 0.018 T 16-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 BER92_RS18660 f45249f1926d365a5951012832661202 672 SMART SM00155 186 213 0.012 T 16-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 BER92_RS18660 f45249f1926d365a5951012832661202 672 SUPERFAMILY SSF56024 65 256 3.66E-38 T 16-09-2016 BER92_RS18660 f45249f1926d365a5951012832661202 672 PANTHER PTHR21248 77 414 4.1E-173 T 16-09-2016 BER92_RS18660 f45249f1926d365a5951012832661202 672 PANTHER PTHR21248 518 611 4.1E-173 T 16-09-2016 BER92_RS18660 f45249f1926d365a5951012832661202 672 Pfam PF13091 PLD-like domain 91 245 1.9E-20 T 16-09-2016 IPR025202 Phospholipase D-like domain BER92_RS18660 f45249f1926d365a5951012832661202 672 Pfam PF13091 PLD-like domain 520 571 2.3E-9 T 16-09-2016 IPR025202 Phospholipase D-like domain BER92_RS18660 f45249f1926d365a5951012832661202 672 PANTHER PTHR21248:SF12 77 414 4.1E-173 T 16-09-2016 BER92_RS18660 f45249f1926d365a5951012832661202 672 PANTHER PTHR21248:SF12 518 611 4.1E-173 T 16-09-2016 BER92_RS18660 f45249f1926d365a5951012832661202 672 SUPERFAMILY SSF56024 325 419 1.06E-22 T 16-09-2016 BER92_RS18660 f45249f1926d365a5951012832661202 672 SUPERFAMILY SSF56024 514 584 1.06E-22 T 16-09-2016 BER92_RS18660 f45249f1926d365a5951012832661202 672 Gene3D G3DSA:3.30.870.10 522 595 9.4E-32 T 16-09-2016 BER92_RS18660 f45249f1926d365a5951012832661202 672 Gene3D G3DSA:3.30.870.10 68 260 1.6E-39 T 16-09-2016 BER92_RS18660 f45249f1926d365a5951012832661202 672 Gene3D G3DSA:3.30.870.10 329 424 9.4E-32 T 16-09-2016 BER92_RS00970 482b3f8d751ebfc709ee95ab80b2cde3 403 PANTHER PTHR37422 4 396 1.0E-138 T 16-09-2016 BER92_RS00970 482b3f8d751ebfc709ee95ab80b2cde3 403 Pfam PF04932 O-Antigen ligase 167 322 8.1E-16 T 16-09-2016 IPR007016 O-antigen ligase-related BER92_RS00970 482b3f8d751ebfc709ee95ab80b2cde3 403 PANTHER PTHR37422:SF2 4 396 1.0E-138 T 16-09-2016 BER92_RS09260 38c8f0609826ea1ac7315de73cda730a 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 117 197 1.6E-8 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS09260 38c8f0609826ea1ac7315de73cda730a 232 Gene3D G3DSA:3.40.50.1000 4 230 3.5E-19 T 16-09-2016 IPR023214 HAD-like domain BER92_RS09260 38c8f0609826ea1ac7315de73cda730a 232 SUPERFAMILY SSF56784 2 230 1.32E-56 T 16-09-2016 IPR023214 HAD-like domain BER92_RS09260 38c8f0609826ea1ac7315de73cda730a 232 TIGRFAM TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 6 227 1.5E-79 T 16-09-2016 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|UniPathway: UPA00904|UniPathway: UPA00904 BER92_RS09260 38c8f0609826ea1ac7315de73cda730a 232 PANTHER PTHR20371 6 232 6.0E-106 T 16-09-2016 BER92_RS09260 38c8f0609826ea1ac7315de73cda730a 232 Hamap MF_01681 Enolase-phosphatase E1 [mtnC]. 3 230 39.616 T 16-09-2016 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|UniPathway: UPA00904|UniPathway: UPA00904 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 Pfam PF00701 Dihydrodipicolinate synthetase family 3 284 1.7E-75 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 PANTHER PTHR12128:SF34 3 302 3.8E-122 T 16-09-2016 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 SMART SM01130 2 289 4.0E-106 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 Gene3D G3DSA:3.20.20.70 3 287 1.8E-95 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 2 287 53.147 T 16-09-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 134 164 - T 16-09-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 3.7E-26 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 3.7E-26 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 3.7E-26 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 3.7E-26 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 PANTHER PTHR12128 3 302 3.8E-122 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 16-09-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 SUPERFAMILY SSF51569 3 286 1.47E-84 T 16-09-2016 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 6 279 1.7E-78 T 16-09-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 BER92_RS10960 48c86da0e97d5c005bdf2b452d10be4a 302 PIRSF PIRSF001365 2 299 6.9E-81 T 16-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 SUPERFAMILY SSF88697 10 202 3.73E-46 T 16-09-2016 IPR015947 PUA-like domain BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 SUPERFAMILY SSF52540 315 604 1.47E-50 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 11 200 1.6E-38 T 16-09-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 353 489 7.6E-18 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 Hamap MF_01973 Lon protease [lon]. 11 789 71.735 T 16-09-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 Gene3D G3DSA:1.10.8.60 501 601 2.0E-32 T 16-09-2016 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 Gene3D G3DSA:3.40.50.300 311 500 1.8E-33 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 TIGRFAM TIGR00763 lon: endopeptidase La 12 788 1.5E-304 T 16-09-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 587 789 1.0E-94 T 16-09-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 SUPERFAMILY SSF54211 612 787 2.01E-57 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 PANTHER PTHR10046 10 793 0.0 T 16-09-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 SMART SM00464 10 203 4.8E-68 T 16-09-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 693 701 - T 16-09-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 PANTHER PTHR10046:SF43 10 793 0.0 T 16-09-2016 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 Gene3D G3DSA:3.30.230.10 607 788 1.6E-73 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 PIRSF PIRSF001174 1 791 0.0 T 16-09-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 SMART SM00382 349 495 4.0E-12 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 743 761 2.4E-53 T 16-09-2016 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 612 628 2.4E-53 T 16-09-2016 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 357 376 2.4E-53 T 16-09-2016 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 720 739 2.4E-53 T 16-09-2016 BER92_RS14370 52abf582c124c5fc6f401ec2c59d0e10 825 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 690 709 2.4E-53 T 16-09-2016 BER92_RS08685 136d8a16884e0f23412c6352ba6b35ff 468 Pfam PF00083 Sugar (and other) transporter 36 466 7.0E-29 T 16-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BER92_RS08685 136d8a16884e0f23412c6352ba6b35ff 468 Gene3D G3DSA:1.20.1250.20 281 464 2.1E-15 T 16-09-2016 BER92_RS08685 136d8a16884e0f23412c6352ba6b35ff 468 Gene3D G3DSA:1.20.1250.20 32 223 8.9E-20 T 16-09-2016 BER92_RS08685 136d8a16884e0f23412c6352ba6b35ff 468 ProSitePatterns PS00216 Sugar transport proteins signature 1. 93 109 - T 16-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BER92_RS08685 136d8a16884e0f23412c6352ba6b35ff 468 SUPERFAMILY SSF103473 17 466 4.84E-59 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS08685 136d8a16884e0f23412c6352ba6b35ff 468 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 16-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BER92_RS08685 136d8a16884e0f23412c6352ba6b35ff 468 PANTHER PTHR24064:SF277 14 466 2.3E-232 T 16-09-2016 BER92_RS08685 136d8a16884e0f23412c6352ba6b35ff 468 PANTHER PTHR24064 14 466 2.3E-232 T 16-09-2016 BER92_RS11055 b376041c2a92522bd662a8dc0280dbcb 558 PANTHER PTHR10566:SF10 13 547 2.2E-165 T 16-09-2016 BER92_RS11055 b376041c2a92522bd662a8dc0280dbcb 558 Pfam PF03109 ABC1 family 118 236 2.7E-32 T 16-09-2016 IPR004147 UbiB domain BER92_RS11055 b376041c2a92522bd662a8dc0280dbcb 558 PANTHER PTHR10566 13 547 2.2E-165 T 16-09-2016 BER92_RS11055 b376041c2a92522bd662a8dc0280dbcb 558 Gene3D G3DSA:3.90.1200.10 265 357 3.4E-9 T 16-09-2016 BER92_RS11055 b376041c2a92522bd662a8dc0280dbcb 558 SUPERFAMILY SSF56112 205 436 3.47E-29 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS11055 b376041c2a92522bd662a8dc0280dbcb 558 SUPERFAMILY SSF56112 100 163 3.47E-29 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS11055 b376041c2a92522bd662a8dc0280dbcb 558 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 12 446 2.3E-163 T 16-09-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PANTHER PTHR19375 2 640 0.0 T 16-09-2016 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PANTHER PTHR19375:SF173 2 640 0.0 T 16-09-2016 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 SUPERFAMILY SSF100920 385 541 1.96E-58 T 16-09-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Gene3D G3DSA:1.20.1270.10 533 602 6.1E-24 T 16-09-2016 IPR029048 Heat shock protein 70kD, C-terminal domain BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 601 3.0E-283 T 16-09-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 338 352 - T 16-09-2016 IPR018181 Heat shock protein 70, conserved site BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 193 206 - T 16-09-2016 IPR018181 Heat shock protein 70, conserved site BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Pfam PF00012 Hsp70 protein 4 601 2.9E-259 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Gene3D G3DSA:3.90.640.10 231 316 9.1E-31 T 16-09-2016 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Gene3D G3DSA:3.30.30.30 53 106 2.7E-26 T 16-09-2016 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.9E-81 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PRINTS PR00301 70kDa heat shock protein signature 199 209 1.9E-81 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.9E-81 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PRINTS PR00301 70kDa heat shock protein signature 139 159 1.9E-81 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PRINTS PR00301 70kDa heat shock protein signature 366 386 1.9E-81 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PRINTS PR00301 70kDa heat shock protein signature 470 486 1.9E-81 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PRINTS PR00301 70kDa heat shock protein signature 389 408 1.9E-81 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.9E-81 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 PRINTS PR00301 70kDa heat shock protein signature 335 351 1.9E-81 T 16-09-2016 IPR013126 Heat shock protein 70 family BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 636 36.175 T 16-09-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Gene3D G3DSA:2.60.34.10 391 532 6.8E-68 T 16-09-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 SUPERFAMILY SSF53067 4 185 8.42E-66 T 16-09-2016 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Gene3D G3DSA:3.30.420.40 120 196 1.4E-64 T 16-09-2016 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Gene3D G3DSA:3.30.420.40 4 52 1.4E-64 T 16-09-2016 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 16-09-2016 IPR018181 Heat shock protein 70, conserved site BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 SUPERFAMILY SSF53067 188 383 1.61E-67 T 16-09-2016 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Gene3D G3DSA:3.30.420.40 197 230 5.4E-34 T 16-09-2016 BER92_RS07970 61270a3f9cd04f2913a421d27fe3ae73 641 Gene3D G3DSA:3.30.420.40 320 362 5.4E-34 T 16-09-2016 BER92_RS18340 dc869622042c3d2ad23a74cf7590d338 431 SUPERFAMILY SSF103473 22 427 1.03E-33 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS18340 dc869622042c3d2ad23a74cf7590d338 431 PANTHER PTHR12778 27 419 2.0E-89 T 16-09-2016 BER92_RS18340 dc869622042c3d2ad23a74cf7590d338 431 Gene3D G3DSA:1.20.1250.20 25 212 4.1E-13 T 16-09-2016 BER92_RS18340 dc869622042c3d2ad23a74cf7590d338 431 Gene3D G3DSA:1.20.1250.20 244 423 4.0E-13 T 16-09-2016 BER92_RS18340 dc869622042c3d2ad23a74cf7590d338 431 Pfam PF07690 Major Facilitator Superfamily 29 382 2.8E-19 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS12755 b1cf4630b839b5f55bae24c88b43d60b 1288 PANTHER PTHR38690 4 1288 0.0 T 16-09-2016 BER92_RS12755 b1cf4630b839b5f55bae24c88b43d60b 1288 Pfam PF13502 AsmA-like C-terminal region 1032 1274 8.0E-60 T 16-09-2016 IPR032712 AsmA-like, C-terminal BER92_RS12755 b1cf4630b839b5f55bae24c88b43d60b 1288 Pfam PF13116 Protein of unknown function 508 784 9.0E-40 T 16-09-2016 IPR025263 Domain of unknown function DUF3971 BER92_RS12755 b1cf4630b839b5f55bae24c88b43d60b 1288 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 10 1281 0.0 T 16-09-2016 IPR011836 Conserved hypothetical protein CHP02099 BER92_RS07845 26fefae462ae4c56426d9c17a741b889 322 PANTHER PTHR35604:SF2 2 322 1.1E-241 T 16-09-2016 BER92_RS07845 26fefae462ae4c56426d9c17a741b889 322 Pfam PF01609 Transposase DDE domain 135 310 7.1E-32 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS07845 26fefae462ae4c56426d9c17a741b889 322 PANTHER PTHR35604 2 322 1.1E-241 T 16-09-2016 BER92_RS07845 26fefae462ae4c56426d9c17a741b889 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.4E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS11435 26fefae462ae4c56426d9c17a741b889 322 PANTHER PTHR35604:SF2 2 322 1.1E-241 T 16-09-2016 BER92_RS11435 26fefae462ae4c56426d9c17a741b889 322 Pfam PF01609 Transposase DDE domain 135 310 7.1E-32 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11435 26fefae462ae4c56426d9c17a741b889 322 PANTHER PTHR35604 2 322 1.1E-241 T 16-09-2016 BER92_RS11435 26fefae462ae4c56426d9c17a741b889 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.4E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 SUPERFAMILY SSF55021 795 863 5.83E-11 T 16-09-2016 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 Pfam PF08335 GlnD PII-uridylyltransferase 178 316 1.1E-29 T 16-09-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 PIRSF PIRSF006288 9 869 1.1E-280 T 16-09-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 PANTHER PTHR13734:SF45 400 686 1.4E-132 T 16-09-2016 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 SMART SM00471 446 593 7.2E-8 T 16-09-2016 IPR003607 HD/PDEase domain BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 869 255.802 T 16-09-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 Gene3D G3DSA:1.10.3210.10 420 609 5.9E-23 T 16-09-2016 IPR006674 HD domain BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 Gene3D G3DSA:3.30.460.10 73 154 1.2E-5 T 16-09-2016 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 SUPERFAMILY SSF81593 198 317 3.61E-8 T 16-09-2016 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 SUPERFAMILY SSF81301 26 174 1.64E-13 T 16-09-2016 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 35 866 5.2E-225 T 16-09-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 PANTHER PTHR13734 400 686 1.4E-132 T 16-09-2016 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 Gene3D G3DSA:3.30.70.260 794 857 1.4E-13 T 16-09-2016 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 Pfam PF01966 HD domain 451 562 3.9E-13 T 16-09-2016 IPR006674 HD domain BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 SUPERFAMILY SSF55021 688 758 8.74E-6 T 16-09-2016 BER92_RS06480 403575a47b8dfffa45ce30d9cbb78dd6 869 SUPERFAMILY SSF109604 418 541 8.79E-14 T 16-09-2016 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 SUPERFAMILY SSF54611 19 150 5.01E-47 T 16-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 83 103 1.4E-35 T 16-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 23 40 1.4E-35 T 16-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 107 129 1.4E-35 T 16-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 133 151 1.4E-35 T 16-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 18 153 8.3E-48 T 16-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 Pfam PF02556 Preprotein translocase subunit SecB 16 153 3.2E-53 T 16-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 Gene3D G3DSA:3.10.420.10 15 159 1.1E-53 T 16-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 PANTHER PTHR36918 4 167 1.9E-84 T 16-09-2016 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 PANTHER PTHR36918:SF1 4 167 1.9E-84 T 16-09-2016 BER92_RS02085 5302b6abb9f3673ad439d9d8acd3cc6d 171 Hamap MF_00821 Protein-export protein SecB [secB]. 1 155 31.999 T 16-09-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 Pfam PF13541 Subunit ChlI of Mg-chelatase 355 438 1.8E-9 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 SUPERFAMILY SSF52540 76 299 1.25E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 SMART SM00382 99 252 1.1E-8 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 Gene3D G3DSA:3.30.230.10 295 462 1.9E-33 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 TIGRFAM TIGR00416 sms: DNA repair protein RadA 4 460 9.1E-190 T 16-09-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 PANTHER PTHR32472 2 462 3.0E-203 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 Gene3D G3DSA:3.40.50.300 66 285 5.4E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 PRINTS PR01874 DNA repair protein radA signature 132 149 4.9E-92 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 PRINTS PR01874 DNA repair protein radA signature 221 249 4.9E-92 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 PRINTS PR01874 DNA repair protein radA signature 330 353 4.9E-92 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 PRINTS PR01874 DNA repair protein radA signature 12 36 4.9E-92 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 PRINTS PR01874 DNA repair protein radA signature 91 119 4.9E-92 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 PRINTS PR01874 DNA repair protein radA signature 256 282 4.9E-92 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 PRINTS PR01874 DNA repair protein radA signature 182 206 4.9E-92 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 Pfam PF13481 AAA domain 88 230 4.5E-13 T 16-09-2016 BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 SUPERFAMILY SSF54211 311 462 1.52E-40 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS14785 c471a50e628383498d5cd16d52b81ac7 465 SUPERFAMILY SSF54211 263 277 1.52E-40 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS00100 d406e9f450da58060cc563c41e689278 449 Gene3D G3DSA:2.40.160.60 31 449 7.5E-113 T 16-09-2016 BER92_RS00100 d406e9f450da58060cc563c41e689278 449 PANTHER PTHR35093:SF2 6 449 6.8E-169 T 16-09-2016 BER92_RS00100 d406e9f450da58060cc563c41e689278 449 SUPERFAMILY SSF56935 29 449 2.75E-86 T 16-09-2016 BER92_RS00100 d406e9f450da58060cc563c41e689278 449 PANTHER PTHR35093 6 449 6.8E-169 T 16-09-2016 BER92_RS00100 d406e9f450da58060cc563c41e689278 449 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 20 449 2.5E-128 T 16-09-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) BER92_RS16105 63546be77b085ef307e19a17594c2a88 383 Gene3D G3DSA:3.30.1330.60 169 276 7.3E-17 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS16105 63546be77b085ef307e19a17594c2a88 383 Pfam PF00691 OmpA family 173 263 9.3E-13 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS16105 63546be77b085ef307e19a17594c2a88 383 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 14 64 2.4E-19 T 16-09-2016 IPR025713 Motility protein B, N-terminal domain BER92_RS16105 63546be77b085ef307e19a17594c2a88 383 PANTHER PTHR30329 1 300 1.6E-139 T 16-09-2016 BER92_RS16105 63546be77b085ef307e19a17594c2a88 383 PANTHER PTHR30329:SF2 1 300 1.6E-139 T 16-09-2016 BER92_RS16105 63546be77b085ef307e19a17594c2a88 383 SUPERFAMILY SSF103088 164 276 2.62E-19 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 12 165 2.7E-59 T 16-09-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 129 145 - T 16-09-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 PIRSF PIRSF006092 8 167 5.1E-48 T 16-09-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 Hamap MF_00105 Transcription elongation factor GreA [greA]. 11 164 28.393 T 16-09-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 Gene3D G3DSA:1.10.287.180 12 84 4.7E-25 T 16-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 Pfam PF03449 Transcription elongation factor, N-terminal 14 83 2.2E-25 T 16-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 PANTHER PTHR30437:SF6 1 166 6.5E-88 T 16-09-2016 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 PANTHER PTHR30437 1 166 6.5E-88 T 16-09-2016 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 SUPERFAMILY SSF54534 89 165 1.57E-21 T 16-09-2016 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 26 57 - T 16-09-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 Hamap MF_00930 Transcription elongation factor GreB [greB]. 10 166 50.344 T 16-09-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 SUPERFAMILY SSF46557 13 87 1.31E-24 T 16-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 Gene3D G3DSA:3.10.50.30 87 165 7.8E-25 T 16-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BER92_RS12350 c93ce1bc5a81f427d9ec0e7b8ed7b8c1 167 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 93 165 1.5E-24 T 16-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PANTHER PTHR22939:SF98 1 75 4.8E-172 T 16-09-2016 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 SUPERFAMILY SSF50156 431 520 3.19E-7 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PANTHER PTHR22939 106 406 4.8E-172 T 16-09-2016 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 SUPERFAMILY SSF50494 51 302 5.17E-64 T 16-09-2016 IPR009003 Peptidase S1, PA clan BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PANTHER PTHR22939 1 75 4.8E-172 T 16-09-2016 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 Gene3D G3DSA:2.30.42.10 314 408 1.2E-27 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 Gene3D G3DSA:2.30.42.10 431 520 5.9E-11 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 Gene3D G3DSA:2.40.10.10 53 198 5.5E-36 T 16-09-2016 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PANTHER PTHR22939:SF98 106 406 4.8E-172 T 16-09-2016 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 SUPERFAMILY SSF50156 269 394 3.68E-23 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PRINTS PR00834 HtrA/DegQ protease family signature 351 363 7.2E-50 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PRINTS PR00834 HtrA/DegQ protease family signature 167 187 7.2E-50 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PRINTS PR00834 HtrA/DegQ protease family signature 207 231 7.2E-50 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PRINTS PR00834 HtrA/DegQ protease family signature 265 282 7.2E-50 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PRINTS PR00834 HtrA/DegQ protease family signature 146 158 7.2E-50 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 PRINTS PR00834 HtrA/DegQ protease family signature 243 260 7.2E-50 T 16-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 Pfam PF13180 PDZ domain 312 402 1.2E-16 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 Gene3D G3DSA:2.40.10.10 199 313 4.6E-43 T 16-09-2016 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 53 519 2.4E-146 T 16-09-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 Pfam PF13365 Trypsin-like peptidase domain 137 272 1.9E-37 T 16-09-2016 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 SMART SM00228 430 513 4.1 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS06805 ac9c0e01e0a41211234992a081c2f28d 523 SMART SM00228 311 393 3.7E-11 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 SUPERFAMILY SSF56194 220 348 5.23E-42 T 16-09-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 SUPERFAMILY SSF56176 17 201 2.13E-36 T 16-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 Gene3D G3DSA:3.30.465.10 88 245 7.6E-49 T 16-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 PANTHER PTHR21071:SF6 9 350 1.4E-156 T 16-09-2016 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 350 79.75 T 16-09-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 Pfam PF01565 FAD binding domain 35 150 1.5E-15 T 16-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 Gene3D G3DSA:3.90.78.10 246 349 4.6E-38 T 16-09-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 Gene3D G3DSA:3.30.43.10 15 78 4.1E-19 T 16-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 222 346 1.0E-32 T 16-09-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 20 347 7.7E-64 T 16-09-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS10695 bd672b473fc48fea8de0bec65e75bd38 350 PANTHER PTHR21071 9 350 1.4E-156 T 16-09-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 SUPERFAMILY SSF47384 151 218 1.04E-7 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 Gene3D G3DSA:1.10.287.130 152 217 2.1E-4 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 30 139 5.5E-18 T 16-09-2016 IPR000014 PAS domain BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 Gene3D G3DSA:3.30.565.10 223 380 8.8E-30 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 Gene3D G3DSA:3.30.450.20 31 132 4.5E-18 T 16-09-2016 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 SMART SM00387 263 383 2.5E-21 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 264 381 1.1E-13 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 Pfam PF08448 PAS fold 31 135 1.0E-8 T 16-09-2016 IPR013656 PAS fold-4 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 SMART SM00388 155 221 3.5E-5 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 326 1.2E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 361 1.2E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 330 340 1.2E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 380 1.2E-10 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 SUPERFAMILY SSF55785 32 142 3.22E-20 T 16-09-2016 IPR000014 PAS domain BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 PANTHER PTHR24423:SF527 16 384 3.2E-145 T 16-09-2016 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 PANTHER PTHR24423 16 384 3.2E-145 T 16-09-2016 BER92_RS14740 865efb1f5aab9c3e46148db4bcee6bf9 388 SUPERFAMILY SSF55874 211 381 1.96E-32 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 Pfam PF00512 His Kinase A (phospho-acceptor) domain 314 378 7.6E-13 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 PANTHER PTHR24423 1 19 3.4E-207 T 16-09-2016 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 PANTHER PTHR24423 196 529 3.4E-207 T 16-09-2016 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 PANTHER PTHR24423:SF483 1 19 3.4E-207 T 16-09-2016 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 Gene3D G3DSA:3.30.565.10 366 529 1.2E-33 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 476 3.3E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 509 3.3E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 528 3.3E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 490 3.3E-11 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 Gene3D G3DSA:1.10.287.130 314 365 2.2E-12 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 PANTHER PTHR24423:SF483 196 529 3.4E-207 T 16-09-2016 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 SMART SM00388 314 380 3.8E-14 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 423 529 5.0E-17 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 SUPERFAMILY SSF47384 311 378 2.16E-13 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 SUPERFAMILY SSF55874 372 527 1.44E-32 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 SMART SM00387 422 531 1.3E-24 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS03930 3cc497c3ae93fbacb14d81659c117d62 536 Gene3D G3DSA:3.30.450.20 201 261 8.8E-5 T 16-09-2016 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 16-09-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 PANTHER PTHR20852:SF15 160 469 4.9E-261 T 16-09-2016 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 Pfam PF00120 Glutamine synthetase, catalytic domain 102 466 3.3E-131 T 16-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 PANTHER PTHR20852 1 138 4.9E-261 T 16-09-2016 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 SUPERFAMILY SSF55931 102 467 3.24E-131 T 16-09-2016 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 4.8E-29 T 16-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 467 1.1E-193 T 16-09-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 Gene3D G3DSA:3.10.20.70 3 105 1.8E-37 T 16-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 PANTHER PTHR20852:SF15 1 138 4.9E-261 T 16-09-2016 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 Gene3D G3DSA:3.30.590.10 106 456 1.0E-130 T 16-09-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 16-09-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 SMART SM01230 102 379 9.5E-138 T 16-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 PANTHER PTHR20852 160 469 4.9E-261 T 16-09-2016 BER92_RS18590 9ba0eb07baad057f857ab82d62bc13a0 469 SUPERFAMILY SSF54368 3 100 1.23E-35 T 16-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BER92_RS11220 4cc191b852da8d78699949fd6ecf180d 87 Gene3D G3DSA:1.10.10.60 15 83 8.3E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS11220 4cc191b852da8d78699949fd6ecf180d 87 PANTHER PTHR33609 1 87 6.4E-42 T 16-09-2016 BER92_RS11220 4cc191b852da8d78699949fd6ecf180d 87 Pfam PF01527 Transposase 2 70 4.4E-20 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS11220 4cc191b852da8d78699949fd6ecf180d 87 SUPERFAMILY SSF46689 2 82 1.97E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 SUPERFAMILY SSF48208 45 536 3.81E-154 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 306 323 8.4E-42 T 16-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 272 289 8.4E-42 T 16-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 338 355 8.4E-42 T 16-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 443 459 8.4E-42 T 16-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 197 215 8.4E-42 T 16-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 520 533 8.4E-42 T 16-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 PANTHER PTHR23403 15 557 0.0 T 16-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 Hamap MF_01060 Periplasmic trehalase [treA]. 1 538 82.827 T 16-09-2016 IPR023720 Trehalase, periplasmic GO:0004555|GO:0005993|GO:0042597|GO:0071474 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 ProSitePatterns PS00928 Trehalase signature 2. 450 459 - T 16-09-2016 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 PANTHER PTHR23403:SF13 15 557 0.0 T 16-09-2016 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 Pfam PF01204 Trehalase 62 536 7.0E-168 T 16-09-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS02540 3b2c4df6dce1386dcbffaa97b3637c49 557 ProSitePatterns PS00927 Trehalase signature 1. 155 168 - T 16-09-2016 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 PIRSF PIRSF002191 1 137 2.6E-47 T 16-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 Pfam PF01245 Ribosomal protein L19 8 116 2.5E-45 T 16-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 8 117 5.1E-44 T 16-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 PANTHER PTHR15680 1 123 9.7E-47 T 16-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 PRINTS PR00061 Ribosomal protein L19 signature 38 67 4.7E-36 T 16-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 PRINTS PR00061 Ribosomal protein L19 signature 92 117 4.7E-36 T 16-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 PRINTS PR00061 Ribosomal protein L19 signature 8 37 4.7E-36 T 16-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 SUPERFAMILY SSF50104 10 120 3.11E-41 T 16-09-2016 IPR008991 Translation protein SH3-like domain BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 6 118 27.67 T 16-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05940 1b7a12599c6a008086b7b1b0786e29d5 138 ProSitePatterns PS01015 Ribosomal protein L19 signature. 90 105 - T 16-09-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS01770 f55e858d9e667ff7d5afcc985db9d67b 599 PANTHER PTHR31616 4 599 1.4E-197 T 16-09-2016 BER92_RS01770 f55e858d9e667ff7d5afcc985db9d67b 599 Pfam PF00723 Glycosyl hydrolases family 15 225 531 1.1E-48 T 16-09-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 BER92_RS01770 f55e858d9e667ff7d5afcc985db9d67b 599 Gene3D G3DSA:1.50.10.10 216 593 3.9E-81 T 16-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 BER92_RS01770 f55e858d9e667ff7d5afcc985db9d67b 599 SUPERFAMILY SSF48208 190 590 5.1E-100 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS01770 f55e858d9e667ff7d5afcc985db9d67b 599 PANTHER PTHR31616:SF0 4 599 1.4E-197 T 16-09-2016 BER92_RS07945 8e7cfce4ee7714180fc34745e12f4220 131 Pfam PF04355 SmpA / OmlA family 28 98 2.9E-21 T 16-09-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 BER92_RS07945 8e7cfce4ee7714180fc34745e12f4220 131 PANTHER PTHR37482:SF1 1 131 2.3E-50 T 16-09-2016 BER92_RS07945 8e7cfce4ee7714180fc34745e12f4220 131 PANTHER PTHR37482 1 131 2.3E-50 T 16-09-2016 BER92_RS07945 8e7cfce4ee7714180fc34745e12f4220 131 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 1 118 30.877 T 16-09-2016 IPR026592 Outer membrane protein assembly factor BamE BER92_RS12580 78b246c788fde820c2f8eb6d4ecb6500 117 Pfam PF02699 Preprotein translocase subunit 31 104 1.7E-28 T 16-09-2016 IPR003849 Preprotein translocase YajC BER92_RS12580 78b246c788fde820c2f8eb6d4ecb6500 117 PANTHER PTHR33909 6 117 1.5E-34 T 16-09-2016 BER92_RS12580 78b246c788fde820c2f8eb6d4ecb6500 117 PRINTS PR01853 Bacterial YajC preprotein translocase signature 28 48 6.0E-12 T 16-09-2016 IPR003849 Preprotein translocase YajC BER92_RS12580 78b246c788fde820c2f8eb6d4ecb6500 117 PRINTS PR01853 Bacterial YajC preprotein translocase signature 48 66 6.0E-12 T 16-09-2016 IPR003849 Preprotein translocase YajC BER92_RS12580 78b246c788fde820c2f8eb6d4ecb6500 117 SMART SM01323 26 108 7.9E-44 T 16-09-2016 IPR003849 Preprotein translocase YajC BER92_RS12580 78b246c788fde820c2f8eb6d4ecb6500 117 PANTHER PTHR33909:SF1 6 117 1.5E-34 T 16-09-2016 BER92_RS12580 78b246c788fde820c2f8eb6d4ecb6500 117 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 28 108 5.5E-27 T 16-09-2016 IPR003849 Preprotein translocase YajC BER92_RS16830 8adada10360def6fa19bf9d5ae4762f4 278 SUPERFAMILY SSF52402 3 124 2.43E-18 T 16-09-2016 BER92_RS16830 8adada10360def6fa19bf9d5ae4762f4 278 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 5 124 5.0E-7 T 16-09-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 BER92_RS16830 8adada10360def6fa19bf9d5ae4762f4 278 Gene3D G3DSA:3.40.50.620 3 125 3.3E-24 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 SMART SM00267 795 966 7.6E-51 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 Gene3D G3DSA:3.30.70.270 808 964 2.8E-47 T 16-09-2016 BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 PANTHER PTHR10799 838 964 3.3E-25 T 16-09-2016 BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 804 964 4.1E-42 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 PANTHER PTHR10799:SF728 838 964 3.3E-25 T 16-09-2016 BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 Pfam PF07495 Y_Y_Y domain 675 737 2.7E-11 T 16-09-2016 IPR011123 Two component regulator three Y BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 Gene3D G3DSA:2.120.10.30 233 505 1.2E-8 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 SUPERFAMILY SSF63829 290 492 2.62E-12 T 16-09-2016 BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 SUPERFAMILY SSF63829 64 108 4.12E-6 T 16-09-2016 BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 SUPERFAMILY SSF63829 147 176 4.12E-6 T 16-09-2016 BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 SUPERFAMILY SSF63829 218 369 4.12E-6 T 16-09-2016 BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 SUPERFAMILY SSF55073 811 964 2.28E-40 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS10440 df7cb7ea54486b03a41d4ec4fe504f47 973 Pfam PF00990 Diguanylate cyclase, GGDEF domain 806 962 8.7E-42 T 16-09-2016 IPR000160 GGDEF domain BER92_RS06205 c1943cb33f8707956270614e9a750081 396 Gene3D G3DSA:3.30.9.10 234 332 4.2E-14 T 16-09-2016 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 Gene3D G3DSA:3.30.9.10 108 161 4.2E-14 T 16-09-2016 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 Gene3D G3DSA:3.50.50.60 162 233 2.3E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 Gene3D G3DSA:3.50.50.60 24 106 2.3E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 Gene3D G3DSA:3.50.50.60 333 390 2.3E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 SUPERFAMILY SSF51905 30 236 7.38E-49 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 SUPERFAMILY SSF51905 333 391 7.38E-49 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 SUPERFAMILY SSF54373 232 332 1.03E-14 T 16-09-2016 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 PANTHER PTHR13847:SF189 24 389 3.6E-126 T 16-09-2016 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 Pfam PF01266 FAD dependent oxidoreductase 31 371 9.6E-57 T 16-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BER92_RS06205 c1943cb33f8707956270614e9a750081 396 PANTHER PTHR13847 24 389 3.6E-126 T 16-09-2016 BER92_RS10265 35a596d7ef454f9caf7be6e0b7158f28 251 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 227 1.8E-54 T 16-09-2016 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 BER92_RS10265 35a596d7ef454f9caf7be6e0b7158f28 251 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 172 246 9.2E-22 T 16-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER92_RS10265 35a596d7ef454f9caf7be6e0b7158f28 251 Pfam PF00460 Flagella basal body rod protein 5 35 1.1E-7 T 16-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BER92_RS10265 35a596d7ef454f9caf7be6e0b7158f28 251 PANTHER PTHR30435:SF18 1 251 2.5E-117 T 16-09-2016 BER92_RS10265 35a596d7ef454f9caf7be6e0b7158f28 251 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 121 7.2E-35 T 16-09-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G BER92_RS10265 35a596d7ef454f9caf7be6e0b7158f28 251 PANTHER PTHR30435 1 251 2.5E-117 T 16-09-2016 BER92_RS10265 35a596d7ef454f9caf7be6e0b7158f28 251 SUPERFAMILY SSF117143 77 208 8.24E-14 T 16-09-2016 BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 Gene3D G3DSA:3.90.226.10 222 320 5.1E-48 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 Gene3D G3DSA:3.90.226.10 332 440 2.5E-60 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 Gene3D G3DSA:3.90.226.10 478 555 2.5E-60 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 Gene3D G3DSA:3.90.226.10 38 178 5.1E-48 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 PIRSF PIRSF001217 10 633 5.1E-205 T 16-09-2016 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 359 547 3.2E-49 T 16-09-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 Pfam PF01343 Peptidase family S49 142 296 3.0E-22 T 16-09-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 Pfam PF01343 Peptidase family S49 400 551 4.6E-46 T 16-09-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 SUPERFAMILY SSF52096 214 290 3.23E-14 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 SUPERFAMILY SSF52096 38 182 3.23E-14 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 SUPERFAMILY SSF52096 327 448 8.03E-40 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 SUPERFAMILY SSF52096 477 537 8.03E-40 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 PANTHER PTHR33209 1 633 3.9E-219 T 16-09-2016 BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 PANTHER PTHR33209:SF1 1 633 3.9E-219 T 16-09-2016 BER92_RS00175 f7597890610b854e30ab0344d8f6a0b5 633 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 18 578 1.8E-160 T 16-09-2016 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 BER92_RS16835 5ae86b968c08e5355c183fd205816bf3 1108 Gene3D G3DSA:3.40.50.300 138 212 4.3E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16835 5ae86b968c08e5355c183fd205816bf3 1108 Gene3D G3DSA:3.40.50.300 26 100 4.3E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16835 5ae86b968c08e5355c183fd205816bf3 1108 SUPERFAMILY SSF52540 25 95 9.43E-8 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16835 5ae86b968c08e5355c183fd205816bf3 1108 SUPERFAMILY SSF52540 137 214 9.43E-8 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS17970 fc52d2899365254d2bc86fef030ab422 265 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 16-09-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 BER92_RS17970 fc52d2899365254d2bc86fef030ab422 265 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 260 4.3E-95 T 16-09-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 BER92_RS17970 fc52d2899365254d2bc86fef030ab422 265 PANTHER PTHR22854 1 261 5.9E-117 T 16-09-2016 BER92_RS17970 fc52d2899365254d2bc86fef030ab422 265 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 262 36.267 T 16-09-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 BER92_RS17970 fc52d2899365254d2bc86fef030ab422 265 Gene3D G3DSA:3.20.20.70 1 263 5.7E-108 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS17970 fc52d2899365254d2bc86fef030ab422 265 PANTHER PTHR22854:SF2 1 261 5.9E-117 T 16-09-2016 BER92_RS17970 fc52d2899365254d2bc86fef030ab422 265 SUPERFAMILY SSF51366 12 262 1.07E-90 T 16-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 BER92_RS17255 b5f82df2d0e54a22e66cc2fffd65aa40 714 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 169 1.9E-16 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS17255 b5f82df2d0e54a22e66cc2fffd65aa40 714 Gene3D G3DSA:2.40.170.20 183 714 1.1E-140 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS17255 b5f82df2d0e54a22e66cc2fffd65aa40 714 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 69 714 1.9E-104 T 16-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 BER92_RS17255 b5f82df2d0e54a22e66cc2fffd65aa40 714 SUPERFAMILY SSF56935 31 714 1.23E-130 T 16-09-2016 BER92_RS17255 b5f82df2d0e54a22e66cc2fffd65aa40 714 Gene3D G3DSA:2.170.130.10 31 179 1.9E-31 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS17255 b5f82df2d0e54a22e66cc2fffd65aa40 714 PANTHER PTHR32552:SF29 1 714 0.0 T 16-09-2016 BER92_RS17255 b5f82df2d0e54a22e66cc2fffd65aa40 714 PANTHER PTHR32552 1 714 0.0 T 16-09-2016 BER92_RS17255 b5f82df2d0e54a22e66cc2fffd65aa40 714 Pfam PF00593 TonB dependent receptor 472 713 7.6E-32 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS15470 3cc25eac0fbcb1db6d691040228263a5 402 PANTHER PTHR30408:SF2 2 201 5.7E-43 T 16-09-2016 BER92_RS15470 3cc25eac0fbcb1db6d691040228263a5 402 SUPERFAMILY SSF116734 240 396 3.6E-18 T 16-09-2016 BER92_RS15470 3cc25eac0fbcb1db6d691040228263a5 402 SUPERFAMILY SSF116734 2 203 1.05E-38 T 16-09-2016 BER92_RS15470 3cc25eac0fbcb1db6d691040228263a5 402 Pfam PF01420 Type I restriction modification DNA specificity domain 3 179 1.5E-16 T 16-09-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 BER92_RS15470 3cc25eac0fbcb1db6d691040228263a5 402 PANTHER PTHR30408 2 201 5.7E-43 T 16-09-2016 BER92_RS16295 c77542deec671b190371039cb08c708f 90 Pfam PF02954 Bacterial regulatory protein, Fis family 47 87 4.3E-14 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS16295 c77542deec671b190371039cb08c708f 90 PRINTS PR01591 DNA-binding protein FIS signature 18 34 1.0E-8 T 16-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BER92_RS16295 c77542deec671b190371039cb08c708f 90 PRINTS PR01591 DNA-binding protein FIS signature 34 49 1.0E-8 T 16-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BER92_RS16295 c77542deec671b190371039cb08c708f 90 PRINTS PR01591 DNA-binding protein FIS signature 49 61 1.0E-8 T 16-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BER92_RS16295 c77542deec671b190371039cb08c708f 90 PANTHER PTHR32071 18 90 3.0E-23 T 16-09-2016 BER92_RS16295 c77542deec671b190371039cb08c708f 90 SUPERFAMILY SSF46689 10 89 3.81E-23 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16295 c77542deec671b190371039cb08c708f 90 PIRSF PIRSF002097 2 90 8.6E-35 T 16-09-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BER92_RS16295 c77542deec671b190371039cb08c708f 90 Gene3D G3DSA:1.10.10.60 19 89 4.3E-26 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16295 c77542deec671b190371039cb08c708f 90 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 53 70 3.7E-12 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS16295 c77542deec671b190371039cb08c708f 90 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 70 90 3.7E-12 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS02875 de8c87ad90b12f7163e311a17d864ce1 352 Gene3D G3DSA:3.30.360.10 131 342 4.4E-37 T 16-09-2016 BER92_RS02875 de8c87ad90b12f7163e311a17d864ce1 352 PANTHER PTHR22604:SF53 1 343 1.3E-126 T 16-09-2016 BER92_RS02875 de8c87ad90b12f7163e311a17d864ce1 352 SUPERFAMILY SSF51735 3 157 1.6E-50 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02875 de8c87ad90b12f7163e311a17d864ce1 352 PANTHER PTHR22604 1 343 1.3E-126 T 16-09-2016 BER92_RS02875 de8c87ad90b12f7163e311a17d864ce1 352 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 120 3.0E-26 T 16-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 BER92_RS02875 de8c87ad90b12f7163e311a17d864ce1 352 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 229 4.3E-16 T 16-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 BER92_RS02875 de8c87ad90b12f7163e311a17d864ce1 352 SUPERFAMILY SSF55347 130 284 1.08E-27 T 16-09-2016 BER92_RS02875 de8c87ad90b12f7163e311a17d864ce1 352 Gene3D G3DSA:3.40.50.720 2 130 2.5E-42 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15140 586820bc9a1a53bf3a648fcb960a04b8 589 Pfam PF04183 IucA / IucC family 150 379 7.9E-41 T 16-09-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 BER92_RS15140 586820bc9a1a53bf3a648fcb960a04b8 589 PANTHER PTHR34384:SF1 1 587 6.1E-260 T 16-09-2016 BER92_RS15140 586820bc9a1a53bf3a648fcb960a04b8 589 Pfam PF06276 Ferric iron reductase FhuF-like transporter 409 568 4.4E-35 T 16-09-2016 IPR022770 Ferric iron reductase FhuF domain BER92_RS15140 586820bc9a1a53bf3a648fcb960a04b8 589 PANTHER PTHR34384 1 587 6.1E-260 T 16-09-2016 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 Gene3D G3DSA:1.10.150.20 551 605 7.1E-19 T 16-09-2016 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 SUPERFAMILY SSF46600 193 246 3.14E-12 T 16-09-2016 IPR001943 UVR domain GO:0005515 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 SMART SM00465 21 102 7.4E-16 T 16-09-2016 IPR000305 GIY-YIG nuclease superfamily BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 PANTHER PTHR30562 12 604 5.9E-263 T 16-09-2016 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 Gene3D G3DSA:4.10.860.10 189 246 1.1E-16 T 16-09-2016 IPR001943 UVR domain GO:0005515 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 PANTHER PTHR30562:SF1 12 604 5.9E-263 T 16-09-2016 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 SUPERFAMILY SSF82771 21 104 7.59E-18 T 16-09-2016 IPR000305 GIY-YIG nuclease superfamily BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 16 584 1.1E-177 T 16-09-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 Hamap MF_00203 UvrABC system protein C [uvrC]. 8 603 26.928 T 16-09-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 Pfam PF01541 GIY-YIG catalytic domain 23 97 6.2E-7 T 16-09-2016 IPR000305 GIY-YIG nuclease superfamily BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 SUPERFAMILY SSF47781 520 605 6.35E-19 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 Gene3D G3DSA:3.40.1440.10 22 98 4.4E-6 T 16-09-2016 IPR027299 GIY-YIG domain BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 Pfam PF02151 UvrB/uvrC motif 212 240 3.9E-8 T 16-09-2016 IPR001943 UVR domain GO:0005515 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 384 538 6.2E-48 T 16-09-2016 IPR001162 UvrC family homology region BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 SMART SM00278 552 571 1.2 T 16-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BER92_RS11480 29fffdc023f6a4639c1bc0f242944099 618 SMART SM00278 584 603 230.0 T 16-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BER92_RS16665 b3cd4be7c4917f2656fdd7d6151764bc 336 TIGRFAM TIGR02565 cas_Csy2: CRISPR type I-F/YPEST-associated protein Csy2 10 316 4.6E-84 T 16-09-2016 IPR013398 CRISPR-associated protein Csy2 BER92_RS16665 b3cd4be7c4917f2656fdd7d6151764bc 336 Pfam PF09614 CRISPR-associated protein (Cas_Csy2) 11 315 2.6E-107 T 16-09-2016 IPR013398 CRISPR-associated protein Csy2 BER92_RS14575 ae82b9b348c7cbf006f9f1c23f9bf83f 462 PIRSF PIRSF006060 11 457 6.1E-70 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS14575 ae82b9b348c7cbf006f9f1c23f9bf83f 462 PANTHER PTHR11785 14 461 3.8E-254 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS14575 ae82b9b348c7cbf006f9f1c23f9bf83f 462 Pfam PF00324 Amino acid permease 28 435 1.6E-92 T 16-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 BER92_RS14575 ae82b9b348c7cbf006f9f1c23f9bf83f 462 PANTHER PTHR11785:SF386 14 461 3.8E-254 T 16-09-2016 BER92_RS14575 ae82b9b348c7cbf006f9f1c23f9bf83f 462 ProSitePatterns PS00218 Amino acid permeases signature. 52 82 - T 16-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 SUPERFAMILY SSF46894 144 212 3.37E-22 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 SUPERFAMILY SSF52172 1 133 2.13E-34 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 2.1E-15 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 2.1E-15 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 2.1E-15 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 PANTHER PTHR26402:SF564 2 209 1.9E-79 T 16-09-2016 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 SMART SM00448 2 115 2.2E-33 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 SMART SM00421 150 207 1.0E-25 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 Pfam PF00072 Response regulator receiver domain 4 115 9.5E-29 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 1.6E-20 T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 Gene3D G3DSA:3.40.50.2300 1 156 3.4E-40 T 16-09-2016 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 PANTHER PTHR26402 2 209 1.9E-79 T 16-09-2016 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 16-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BER92_RS14985 e0eae1b20fd9ed1272eb48295f6ea1d6 213 Gene3D G3DSA:1.10.10.10 157 212 6.7E-27 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS05325 65a5b789db556973bb51ba395fa36357 59 SUPERFAMILY SSF53474 3 54 3.83E-5 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS05325 65a5b789db556973bb51ba395fa36357 59 Gene3D G3DSA:3.40.50.1820 3 48 1.5E-6 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS01875 ad7b7436cefed6570660f4035dcaff5a 149 SUPERFAMILY SSF82866 63 149 7.32E-10 T 16-09-2016 BER92_RS01875 ad7b7436cefed6570660f4035dcaff5a 149 Pfam PF00873 AcrB/AcrD/AcrF family 6 148 1.4E-25 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01875 ad7b7436cefed6570660f4035dcaff5a 149 SUPERFAMILY SSF82693 12 82 2.62E-5 T 16-09-2016 BER92_RS01875 ad7b7436cefed6570660f4035dcaff5a 149 Gene3D G3DSA:1.20.1640.10 71 149 4.7E-11 T 16-09-2016 BER92_RS01875 ad7b7436cefed6570660f4035dcaff5a 149 Gene3D G3DSA:3.30.70.1320 15 70 3.2E-4 T 16-09-2016 BER92_RS01875 ad7b7436cefed6570660f4035dcaff5a 149 PANTHER PTHR32063:SF20 1 148 2.7E-41 T 16-09-2016 BER92_RS01875 ad7b7436cefed6570660f4035dcaff5a 149 PANTHER PTHR32063 1 148 2.7E-41 T 16-09-2016 BER92_RS01875 ad7b7436cefed6570660f4035dcaff5a 149 PRINTS PR00702 Acriflavin resistance protein family signature 128 149 2.9E-9 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01875 ad7b7436cefed6570660f4035dcaff5a 149 PRINTS PR00702 Acriflavin resistance protein family signature 101 124 2.9E-9 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS12000 d537b19e4a6b1299090eb37fdd4ed527 255 Gene3D G3DSA:3.40.1280.10 5 163 1.0E-34 T 16-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER92_RS12000 d537b19e4a6b1299090eb37fdd4ed527 255 PIRSF PIRSF004808 2 252 7.4E-70 T 16-09-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 BER92_RS12000 d537b19e4a6b1299090eb37fdd4ed527 255 SUPERFAMILY SSF75217 6 167 1.77E-36 T 16-09-2016 IPR029028 Alpha/beta knot methyltransferases BER92_RS12000 d537b19e4a6b1299090eb37fdd4ed527 255 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 5 244 2.4E-65 T 16-09-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 BER92_RS12000 d537b19e4a6b1299090eb37fdd4ed527 255 Pfam PF00588 SpoU rRNA Methylase family 7 157 1.1E-34 T 16-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BER92_RS12000 d537b19e4a6b1299090eb37fdd4ed527 255 PANTHER PTHR12029 101 183 5.3E-36 T 16-09-2016 BER92_RS12000 d537b19e4a6b1299090eb37fdd4ed527 255 PANTHER PTHR12029 4 85 5.3E-36 T 16-09-2016 BER92_RS19165 de163c046728294e733bfd687bcfb0b4 158 Pfam PF05598 Transposase domain (DUF772) 73 147 1.1E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS19165 de163c046728294e733bfd687bcfb0b4 158 PANTHER PTHR33803 1 158 3.1E-93 T 16-09-2016 BER92_RS19165 de163c046728294e733bfd687bcfb0b4 158 PANTHER PTHR33803:SF1 1 158 3.1E-93 T 16-09-2016 BER92_RS05125 8955ea4d499ddf24b5e62ce5d3e2f5a5 121 SUPERFAMILY SSF48300 4 58 2.09E-16 T 16-09-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05125 8955ea4d499ddf24b5e62ce5d3e2f5a5 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 48 2.0E-18 T 16-09-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05125 8955ea4d499ddf24b5e62ce5d3e2f5a5 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 121 4.3E-24 T 16-09-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 BER92_RS05125 8955ea4d499ddf24b5e62ce5d3e2f5a5 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 1.2E-41 T 16-09-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05125 8955ea4d499ddf24b5e62ce5d3e2f5a5 121 Gene3D G3DSA:1.20.5.710 2 51 4.6E-22 T 16-09-2016 BER92_RS05125 8955ea4d499ddf24b5e62ce5d3e2f5a5 121 SUPERFAMILY SSF54736 51 121 3.66E-22 T 16-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BER92_RS05125 8955ea4d499ddf24b5e62ce5d3e2f5a5 121 Gene3D G3DSA:3.30.1390.10 52 121 4.7E-27 T 16-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BER92_RS05125 8955ea4d499ddf24b5e62ce5d3e2f5a5 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 58 121 2.0E-25 T 16-09-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 BER92_RS05125 8955ea4d499ddf24b5e62ce5d3e2f5a5 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 23.23 T 16-09-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS18370 c1ea3aa593ab6151bb5e763bad469575 309 SMART SM00470 46 136 2.9E-37 T 16-09-2016 IPR003115 ParB/Sulfiredoxin BER92_RS18370 c1ea3aa593ab6151bb5e763bad469575 309 SUPERFAMILY SSF110849 45 180 7.85E-33 T 16-09-2016 IPR003115 ParB/Sulfiredoxin BER92_RS18370 c1ea3aa593ab6151bb5e763bad469575 309 Gene3D G3DSA:3.90.1530.10 40 142 4.9E-40 T 16-09-2016 BER92_RS18370 c1ea3aa593ab6151bb5e763bad469575 309 Pfam PF02195 ParB-like nuclease domain 47 136 3.2E-28 T 16-09-2016 IPR003115 ParB/Sulfiredoxin BER92_RS18370 c1ea3aa593ab6151bb5e763bad469575 309 PANTHER PTHR33375:SF1 1 309 7.7E-100 T 16-09-2016 BER92_RS18370 c1ea3aa593ab6151bb5e763bad469575 309 PANTHER PTHR33375 1 309 7.7E-100 T 16-09-2016 BER92_RS18370 c1ea3aa593ab6151bb5e763bad469575 309 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 45 219 2.1E-57 T 16-09-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 Gene3D G3DSA:2.40.110.10 121 217 4.4E-33 T 16-09-2016 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 2.2E-30 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 16-09-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 377 3.7E-49 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 Gene3D G3DSA:1.10.540.10 2 119 3.0E-37 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 SUPERFAMILY SSF47203 229 380 1.77E-57 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 SUPERFAMILY SSF56645 2 242 1.07E-71 T 16-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 16-09-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 PANTHER PTHR10909 2 376 1.9E-152 T 16-09-2016 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 2.8E-25 T 16-09-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 Gene3D G3DSA:1.20.140.10 218 380 6.0E-67 T 16-09-2016 BER92_RS08195 055c41fde6c7868c0f87e9df7124077b 382 PANTHER PTHR10909:SF10 2 376 1.9E-152 T 16-09-2016 BER92_RS07340 8594cf9d8745dbd5dd131438799cb249 86 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 7 85 5.0E-39 T 16-09-2016 BER92_RS07340 8594cf9d8745dbd5dd131438799cb249 86 Pfam PF00312 Ribosomal protein S15 6 85 3.6E-37 T 16-09-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS07340 8594cf9d8745dbd5dd131438799cb249 86 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 1 86 21.603 T 16-09-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 BER92_RS07340 8594cf9d8745dbd5dd131438799cb249 86 Gene3D G3DSA:1.10.287.10 4 86 8.3E-38 T 16-09-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 BER92_RS07340 8594cf9d8745dbd5dd131438799cb249 86 PANTHER PTHR23321 3 86 2.4E-41 T 16-09-2016 BER92_RS07340 8594cf9d8745dbd5dd131438799cb249 86 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 4 86 1.3E-37 T 16-09-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 BER92_RS07340 8594cf9d8745dbd5dd131438799cb249 86 ProSitePatterns PS00362 Ribosomal protein S15 signature. 36 66 - T 16-09-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS07340 8594cf9d8745dbd5dd131438799cb249 86 SMART SM01387 5 85 8.4E-50 T 16-09-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS07340 8594cf9d8745dbd5dd131438799cb249 86 SUPERFAMILY SSF47060 4 86 2.94E-34 T 16-09-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 8.7E-68 T 16-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 6.2E-59 T 16-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 6.2E-59 T 16-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 6.2E-59 T 16-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 6.2E-59 T 16-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 6.2E-59 T 16-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 6.2E-59 T 16-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 PANTHER PTHR11652 1 116 1.6E-69 T 16-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 PIRSF PIRSF002133 1 124 7.2E-54 T 16-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 SUPERFAMILY SSF50249 3 123 5.31E-50 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 Gene3D G3DSA:2.40.50.140 1 123 5.9E-64 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 Pfam PF00164 Ribosomal protein S12/S23 5 123 3.9E-41 T 16-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.549 T 16-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 BER92_RS05140 a09ae44c6472ef6fda23e557910517a0 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 16-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SUPERFAMILY SSF48403 693 1088 5.92E-59 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 PANTHER PTHR24133 632 648 0.0 T 16-09-2016 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 PANTHER PTHR24133 688 1089 0.0 T 16-09-2016 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SUPERFAMILY SSF48403 240 516 3.11E-49 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 Pfam PF12796 Ankyrin repeats (3 copies) 693 783 6.3E-8 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 Pfam PF12796 Ankyrin repeats (3 copies) 319 399 1.8E-10 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 Pfam PF12796 Ankyrin repeats (3 copies) 826 912 4.8E-9 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 Pfam PF12796 Ankyrin repeats (3 copies) 418 500 7.3E-7 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 Gene3D G3DSA:1.25.40.20 826 1089 4.9E-48 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 Gene3D G3DSA:1.25.40.20 238 560 3.1E-59 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 PANTHER PTHR24133:SF14 14 570 0.0 T 16-09-2016 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 PANTHER PTHR24133 14 570 0.0 T 16-09-2016 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 PANTHER PTHR24133:SF14 688 1089 0.0 T 16-09-2016 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 Pfam PF00023 Ankyrin repeat 917 948 0.0024 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 Pfam PF00023 Ankyrin repeat 1036 1066 0.025 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 PANTHER PTHR24133:SF14 632 648 0.0 T 16-09-2016 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 304 336 7.6 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 373 403 32.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 505 536 370.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 753 782 0.01 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 917 946 0.38 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 472 501 160.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 884 913 1.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 681 716 390.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 404 435 880.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 720 749 900.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 1035 1064 0.33 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 950 987 25.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 235 264 700.0 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 439 468 8.4E-4 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 340 369 0.0098 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 SMART SM00248 851 880 0.12 T 16-09-2016 IPR002110 Ankyrin repeat GO:0005515 BER92_RS01760 434bd16771ec83e303d91e44b676a24a 1106 Gene3D G3DSA:1.25.40.20 620 806 1.6E-32 T 16-09-2016 IPR020683 Ankyrin repeat-containing domain BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 PANTHER PTHR33693:SF3 141 477 1.4E-195 T 16-09-2016 BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 239 464 7.0E-94 T 16-09-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 PANTHER PTHR33693 141 477 1.4E-195 T 16-09-2016 BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 SUPERFAMILY SSF52141 280 466 4.91E-53 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 Pfam PF13566 Domain of unknown function (DUF4130 77 235 1.7E-42 T 16-09-2016 IPR025404 Domain of unknown function DUF4130 BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 290 453 6.9E-38 T 16-09-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 SMART SM00987 304 463 6.6E-37 T 16-09-2016 BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 11 236 2.9E-65 T 16-09-2016 IPR023875 DNA metabolism protein, putative BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 Pfam PF03167 Uracil DNA glycosylase superfamily 304 462 2.4E-36 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 Gene3D G3DSA:3.40.470.10 279 466 4.8E-63 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS17065 75efda7fada695c300774fa42659b9a7 478 SMART SM00986 304 463 6.6E-37 T 16-09-2016 IPR005122 Uracil-DNA glycosylase-like BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 SUPERFAMILY SSF56425 240 358 4.34E-43 T 16-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 12 596 4.3E-242 T 16-09-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 46 55 - T 16-09-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 SUPERFAMILY SSF51905 362 429 6.02E-75 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 SUPERFAMILY SSF51905 4 263 6.02E-75 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 PIRSF PIRSF000171 1 586 1.1E-36 T 16-09-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 Gene3D G3DSA:4.10.80.40 543 596 8.7E-28 T 16-09-2016 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 Gene3D G3DSA:1.20.58.100 436 542 4.5E-37 T 16-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 PANTHER PTHR11632 1 591 0.0 T 16-09-2016 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 Pfam PF00890 FAD binding domain 12 408 2.3E-122 T 16-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 Pfam PF02910 Fumarate reductase flavoprotein C-term 463 596 9.3E-43 T 16-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 PANTHER PTHR11632:SF51 1 591 0.0 T 16-09-2016 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 9 596 8.2E-288 T 16-09-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 SUPERFAMILY SSF46977 454 596 3.4E-48 T 16-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 Gene3D G3DSA:3.90.700.10 247 352 3.8E-43 T 16-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 Gene3D G3DSA:3.50.50.60 354 427 1.6E-123 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS11560 be463bdaf1e5d12753aec4b269e0fdf3 596 Gene3D G3DSA:3.50.50.60 3 246 1.6E-123 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS06160 71a37d2d9c34615b078f99c4f9008d75 219 Gene3D G3DSA:3.40.50.150 47 193 6.4E-36 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS06160 71a37d2d9c34615b078f99c4f9008d75 219 SUPERFAMILY SSF53335 50 193 4.15E-25 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS06160 71a37d2d9c34615b078f99c4f9008d75 219 PANTHER PTHR14614:SF29 51 190 7.6E-30 T 16-09-2016 BER92_RS06160 71a37d2d9c34615b078f99c4f9008d75 219 PANTHER PTHR14614 51 190 7.6E-30 T 16-09-2016 BER92_RS06160 71a37d2d9c34615b078f99c4f9008d75 219 Pfam PF10294 Lysine methyltransferase 48 172 8.3E-15 T 16-09-2016 IPR019410 Lysine methyltransferase BER92_RS01010 d5eec3d29fb2fe9ca5cf0a3dd2fe1111 156 Pfam PF01609 Transposase DDE domain 1 153 1.1E-23 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01010 d5eec3d29fb2fe9ca5cf0a3dd2fe1111 156 PANTHER PTHR30007:SF0 1 155 1.9E-28 T 16-09-2016 BER92_RS01010 d5eec3d29fb2fe9ca5cf0a3dd2fe1111 156 PANTHER PTHR30007 1 155 1.9E-28 T 16-09-2016 BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 PANTHER PTHR10133:SF37 1 299 2.0E-151 T 16-09-2016 BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 21 181 8.0E-39 T 16-09-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 PANTHER PTHR10133 1 299 2.0E-151 T 16-09-2016 BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 Gene3D G3DSA:1.10.150.20 200 266 1.7E-22 T 16-09-2016 BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 SMART SM00475 16 282 2.0E-75 T 16-09-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 185 282 1.8E-23 T 16-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 SUPERFAMILY SSF47807 185 304 2.24E-23 T 16-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 Gene3D G3DSA:3.40.50.1010 20 199 2.2E-50 T 16-09-2016 IPR029060 PIN domain-like BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 SUPERFAMILY SSF88723 20 174 5.89E-41 T 16-09-2016 IPR029060 PIN domain-like BER92_RS04915 b2fe91fb576a7503ebf7d71fffe13539 328 SMART SM00279 187 222 3.7E-10 T 16-09-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 BER92_RS15675 96a962a89290f1b780cbac7573c55c74 790 Gene3D G3DSA:3.40.50.150 44 137 1.6E-15 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS15675 96a962a89290f1b780cbac7573c55c74 790 Gene3D G3DSA:1.10.510.10 323 369 3.0E-6 T 16-09-2016 BER92_RS15675 96a962a89290f1b780cbac7573c55c74 790 SUPERFAMILY SSF53335 42 136 1.25E-18 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS15675 96a962a89290f1b780cbac7573c55c74 790 SUPERFAMILY SSF56112 247 371 1.01E-12 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS15675 96a962a89290f1b780cbac7573c55c74 790 Pfam PF13847 Methyltransferase domain 56 144 1.6E-11 T 16-09-2016 IPR025714 Methyltransferase domain BER92_RS04365 639a7ceecf1eb3e82391b42b16cc3216 143 PANTHER PTHR30093:SF9 2 140 2.7E-53 T 16-09-2016 BER92_RS04365 639a7ceecf1eb3e82391b42b16cc3216 143 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 16 36 - T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS04365 639a7ceecf1eb3e82391b42b16cc3216 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 17 42 1.2E-10 T 16-09-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BER92_RS04365 639a7ceecf1eb3e82391b42b16cc3216 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 53 71 1.2E-10 T 16-09-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BER92_RS04365 639a7ceecf1eb3e82391b42b16cc3216 143 SUPERFAMILY SSF54523 45 141 1.46E-22 T 16-09-2016 BER92_RS04365 639a7ceecf1eb3e82391b42b16cc3216 143 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 15 37 6.2E-4 T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS04365 639a7ceecf1eb3e82391b42b16cc3216 143 Pfam PF08334 Type II secretion system (T2SS), protein G 40 142 1.4E-26 T 16-09-2016 IPR013545 Type II secretion system protein G BER92_RS04365 639a7ceecf1eb3e82391b42b16cc3216 143 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 17 141 4.0E-27 T 16-09-2016 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 BER92_RS04365 639a7ceecf1eb3e82391b42b16cc3216 143 PANTHER PTHR30093 2 140 2.7E-53 T 16-09-2016 BER92_RS18050 796072e9932b65954e3fee004aa18963 163 Pfam PF00583 Acetyltransferase (GNAT) family 60 140 2.8E-16 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS18050 796072e9932b65954e3fee004aa18963 163 PANTHER PTHR10545 1 163 2.1E-71 T 16-09-2016 BER92_RS18050 796072e9932b65954e3fee004aa18963 163 Gene3D G3DSA:3.40.630.30 3 160 2.6E-62 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS18050 796072e9932b65954e3fee004aa18963 163 SUPERFAMILY SSF55729 6 156 2.92E-39 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS09065 f49c1b875a09a6d255bb686af9703ff7 368 Pfam PF01609 Transposase DDE domain 197 334 2.1E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09065 f49c1b875a09a6d255bb686af9703ff7 368 PANTHER PTHR33803:SF1 3 368 6.7E-269 T 16-09-2016 BER92_RS09065 f49c1b875a09a6d255bb686af9703ff7 368 PANTHER PTHR33803 3 368 6.7E-269 T 16-09-2016 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 Pfam PF00696 Amino acid kinase family 21 300 7.0E-43 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 487 621 7.0E-21 T 16-09-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 Gene3D G3DSA:3.40.50.720 479 650 2.9E-58 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 Pfam PF00742 Homoserine dehydrogenase 629 825 4.5E-50 T 16-09-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 SUPERFAMILY SSF51735 479 651 5.2E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 ProSitePatterns PS00324 Aspartokinase signature. 22 30 - T 16-09-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 PANTHER PTHR21499 22 486 1.2E-172 T 16-09-2016 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 Gene3D G3DSA:3.40.1160.10 126 314 2.1E-64 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 Gene3D G3DSA:3.40.1160.10 18 67 2.1E-64 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 20 474 4.3E-106 T 16-09-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 SUPERFAMILY SSF53633 21 312 5.18E-73 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 SUPERFAMILY SSF55347 629 812 2.35E-47 T 16-09-2016 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 PIRSF PIRSF000727 20 832 0.0 T 16-09-2016 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00050|UniPathway: UPA00051|UniPathway: UPA00051 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 PANTHER PTHR21499:SF1 22 486 1.2E-172 T 16-09-2016 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 Gene3D G3DSA:3.30.360.10 651 807 9.6E-55 T 16-09-2016 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 675 697 - T 16-09-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 SUPERFAMILY SSF55021 320 396 6.22E-20 T 16-09-2016 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 SUPERFAMILY SSF55021 402 488 6.66E-21 T 16-09-2016 BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 Pfam PF13840 ACT domain 328 389 5.6E-8 T 16-09-2016 IPR027795 GATS-like ACT domain BER92_RS10610 f2064fbcb554d8f5eb86ea33f889465e 835 Pfam PF13840 ACT domain 409 469 3.2E-7 T 16-09-2016 IPR027795 GATS-like ACT domain BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 PANTHER PTHR18968 4 575 0.0 T 16-09-2016 BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 Gene3D G3DSA:3.40.50.970 3 177 5.4E-51 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 SUPERFAMILY SSF52518 4 182 4.98E-44 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 321 7.9E-28 T 16-09-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 383 529 2.4E-37 T 16-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 Gene3D G3DSA:3.40.50.1220 188 344 2.0E-40 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 172 7.6E-43 T 16-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 420 439 - T 16-09-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 Gene3D G3DSA:3.40.50.970 354 559 8.5E-57 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 SUPERFAMILY SSF52467 184 352 6.35E-42 T 16-09-2016 IPR029035 DHS-like NAD/FAD-binding domain BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 SUPERFAMILY SSF52518 359 564 2.18E-57 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS02100 bec32dc626f90da7f16665e9a42e4c4e 575 PANTHER PTHR18968:SF12 4 575 0.0 T 16-09-2016 BER92_RS16955 b05eb55b45c29121f2fe33a0edd8ab0f 192 PANTHER PTHR32552:SF37 11 163 4.8E-46 T 16-09-2016 BER92_RS16955 b05eb55b45c29121f2fe33a0edd8ab0f 192 Pfam PF07715 TonB-dependent Receptor Plug Domain 10 72 1.3E-4 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS16955 b05eb55b45c29121f2fe33a0edd8ab0f 192 PANTHER PTHR32552 11 163 4.8E-46 T 16-09-2016 BER92_RS16955 b05eb55b45c29121f2fe33a0edd8ab0f 192 SUPERFAMILY SSF56935 16 167 5.95E-25 T 16-09-2016 BER92_RS16955 b05eb55b45c29121f2fe33a0edd8ab0f 192 Gene3D G3DSA:2.170.130.10 8 80 1.6E-12 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS16955 b05eb55b45c29121f2fe33a0edd8ab0f 192 Gene3D G3DSA:2.40.170.20 85 163 5.6E-13 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 SUPERFAMILY SSF51430 1 320 8.51E-93 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 Gene3D G3DSA:3.20.20.100 1 320 2.4E-98 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 275 288 4.6E-11 T 16-09-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 113 123 4.6E-11 T 16-09-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 164 183 4.6E-11 T 16-09-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 262 274 4.6E-11 T 16-09-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 236 248 4.6E-11 T 16-09-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 208 214 4.6E-11 T 16-09-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 Pfam PF00248 Aldo/keto reductase family 16 319 1.5E-72 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS04680 a17d2d63d4fcda78988b9858fdeef121 322 PANTHER PTHR11732 1 303 1.7E-129 T 16-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta BER92_RS18400 7569596508e844a8692cb3d203b7c798 177 PANTHER PTHR36966 16 175 5.9E-26 T 16-09-2016 BER92_RS18400 7569596508e844a8692cb3d203b7c798 177 PANTHER PTHR36966:SF1 16 175 5.9E-26 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Pfam PF04561 RNA polymerase Rpb2, domain 2 157 227 8.2E-8 T 16-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Pfam PF04561 RNA polymerase Rpb2, domain 2 362 418 6.2E-5 T 16-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Pfam PF04561 RNA polymerase Rpb2, domain 2 449 482 4.7E-6 T 16-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Pfam PF04563 RNA polymerase beta subunit 28 527 2.2E-40 T 16-09-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:2.30.150.10 620 684 2.4E-24 T 16-09-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856 346 416 0.0 T 16-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856 445 753 0.0 T 16-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856 1224 1383 0.0 T 16-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Pfam PF04560 RNA polymerase Rpb2, domain 7 1308 1382 9.3E-27 T 16-09-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 9 1381 0.0 T 16-09-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856:SF20 1075 1169 0.0 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856:SF20 445 753 0.0 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856:SF20 346 416 0.0 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1104 1116 - T 16-09-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856:SF20 772 959 0.0 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856:SF20 6 235 0.0 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Pfam PF10385 RNA polymerase beta subunit external 1 domain 619 684 4.4E-21 T 16-09-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856:SF20 1224 1383 0.0 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856 6 235 0.0 T 16-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:3.90.1100.10 687 741 8.4E-146 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:3.90.1100.10 21 156 8.4E-146 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:3.90.1100.10 473 619 8.4E-146 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:2.40.270.10 822 849 1.0E-86 T 16-09-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:2.40.270.10 1101 1284 1.0E-86 T 16-09-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:2.40.50.150 857 966 6.7E-56 T 16-09-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:2.40.50.150 1086 1100 6.7E-56 T 16-09-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:2.40.50.100 743 821 1.6E-28 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Pfam PF04565 RNA polymerase Rpb2, domain 3 541 608 3.5E-29 T 16-09-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856 1075 1169 0.0 T 16-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 PANTHER PTHR20856 772 959 0.0 T 16-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Pfam PF00562 RNA polymerase Rpb2, domain 6 747 1306 1.9E-158 T 16-09-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:3.90.1110.10 352 472 3.5E-63 T 16-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Gene3D G3DSA:3.90.1110.10 158 235 3.5E-63 T 16-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 14 1383 12.27 T 16-09-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 SUPERFAMILY SSF64484 1080 1382 0.0 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 SUPERFAMILY SSF64484 13 231 0.0 T 16-09-2016 BER92_RS05130 b63dc05b0cfb73954d0609af6bf7a234 1383 SUPERFAMILY SSF64484 349 968 0.0 T 16-09-2016 BER92_RS12485 62efa15a87633af1007f8fbdf76953cb 115 SUPERFAMILY SSF56349 6 87 5.3E-7 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS12485 62efa15a87633af1007f8fbdf76953cb 115 Gene3D G3DSA:1.10.443.10 7 87 6.1E-6 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS13340 94e71dea578a0c82683703be0bd3d8f3 337 Pfam PF02625 XdhC and CoxI family 37 104 1.1E-23 T 16-09-2016 IPR003777 XdhC- CoxI BER92_RS13340 94e71dea578a0c82683703be0bd3d8f3 337 PANTHER PTHR30388 27 322 8.9E-87 T 16-09-2016 BER92_RS13340 94e71dea578a0c82683703be0bd3d8f3 337 Pfam PF13478 XdhC Rossmann domain 182 322 3.6E-21 T 16-09-2016 IPR027051 XdhC Rossmann domain BER92_RS13340 94e71dea578a0c82683703be0bd3d8f3 337 PANTHER PTHR30388:SF4 27 322 8.9E-87 T 16-09-2016 BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 SMART SM00861 357 529 9.9E-64 T 16-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 SUPERFAMILY SSF52518 6 329 8.72E-120 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 SUPERFAMILY SSF52922 536 665 1.18E-41 T 16-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 Gene3D G3DSA:3.40.50.970 6 320 1.4E-128 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 Pfam PF02780 Transketolase, C-terminal domain 553 659 2.7E-17 T 16-09-2016 IPR033248 Transketolase, C-terminal domain BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 PANTHER PTHR11624 331 666 0.0 T 16-09-2016 IPR033247 Transketolase family BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 PANTHER PTHR11624 2 311 0.0 T 16-09-2016 IPR033247 Transketolase family BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 ProSitePatterns PS00802 Transketolase signature 2. 470 486 - T 16-09-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 SUPERFAMILY SSF52518 350 529 4.91E-63 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 Pfam PF02779 Transketolase, pyrimidine binding domain 356 528 1.8E-43 T 16-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 PANTHER PTHR11624:SF1 331 666 0.0 T 16-09-2016 BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 PANTHER PTHR11624:SF1 2 311 0.0 T 16-09-2016 BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 TIGRFAM TIGR00232 tktlase_bact: transketolase 8 665 1.7E-282 T 16-09-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 6 336 5.4E-151 T 16-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 Gene3D G3DSA:3.40.50.970 330 537 7.8E-73 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 Gene3D G3DSA:3.40.50.920 541 666 5.7E-49 T 16-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 BER92_RS16960 cc2efa65ea59d0d5f2d1302540c01e54 666 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 16-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 BER92_RS05230 350ce2fdc1ad6b9aaf308869eb81863f 101 SUPERFAMILY SSF57716 2 101 1.14E-34 T 16-09-2016 BER92_RS05230 350ce2fdc1ad6b9aaf308869eb81863f 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.6E-23 T 16-09-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05230 350ce2fdc1ad6b9aaf308869eb81863f 101 Gene3D G3DSA:4.10.830.10 42 101 7.0E-28 T 16-09-2016 BER92_RS05230 350ce2fdc1ad6b9aaf308869eb81863f 101 PANTHER PTHR19836 1 101 3.4E-54 T 16-09-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05230 350ce2fdc1ad6b9aaf308869eb81863f 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.274 T 16-09-2016 IPR023036 Ribosomal protein S14, bacterial/plastid BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PANTHER PTHR30046:SF0 349 577 3.0E-202 T 16-09-2016 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 12 576 1.3E-81 T 16-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PANTHER PTHR30046 349 577 3.0E-202 T 16-09-2016 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PIRSF PIRSF004862 6 577 1.0E-134 T 16-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 Pfam PF08345 Flagellar M-ring protein C-terminal 263 442 1.0E-45 T 16-09-2016 IPR013556 Flagellar M-ring C-terminal BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 Pfam PF01514 Secretory protein of YscJ/FliF family 39 230 6.0E-65 T 16-09-2016 IPR006182 Secretory protein YscJ/FliF BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PANTHER PTHR30046:SF0 8 333 3.0E-202 T 16-09-2016 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PANTHER PTHR30046 8 333 3.0E-202 T 16-09-2016 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PRINTS PR01009 Flagellar M-ring protein signature 163 177 2.8E-33 T 16-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PRINTS PR01009 Flagellar M-ring protein signature 131 149 2.8E-33 T 16-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PRINTS PR01009 Flagellar M-ring protein signature 206 224 2.8E-33 T 16-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PRINTS PR01009 Flagellar M-ring protein signature 366 390 2.8E-33 T 16-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BER92_RS10365 24602cade7ce7142864c0b12ba91809e 577 PRINTS PR01009 Flagellar M-ring protein signature 276 294 2.8E-33 T 16-09-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BER92_RS12965 8c6c8a6f925ed9b6bcd4a03f4add0d95 339 PANTHER PTHR33407:SF3 239 336 1.4E-77 T 16-09-2016 BER92_RS12965 8c6c8a6f925ed9b6bcd4a03f4add0d95 339 PANTHER PTHR33407:SF3 101 223 1.4E-77 T 16-09-2016 BER92_RS12965 8c6c8a6f925ed9b6bcd4a03f4add0d95 339 SUPERFAMILY SSF51126 125 313 1.91E-39 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS12965 8c6c8a6f925ed9b6bcd4a03f4add0d95 339 Gene3D G3DSA:2.160.20.10 126 314 7.3E-50 T 16-09-2016 IPR012334 Pectin lyase fold BER92_RS12965 8c6c8a6f925ed9b6bcd4a03f4add0d95 339 Pfam PF03211 Pectate lyase 126 314 1.4E-28 T 16-09-2016 IPR004898 Pectate lyase, catalytic GO:0005576|GO:0030570 KEGG: 00040+4.2.2.2 BER92_RS12965 8c6c8a6f925ed9b6bcd4a03f4add0d95 339 PANTHER PTHR33407 239 336 1.4E-77 T 16-09-2016 BER92_RS12965 8c6c8a6f925ed9b6bcd4a03f4add0d95 339 PANTHER PTHR33407 101 223 1.4E-77 T 16-09-2016 BER92_RS19215 f453cebb923e872b8a0b161696cb4a20 220 Gene3D G3DSA:3.10.450.50 125 180 3.2E-19 T 16-09-2016 IPR032710 NTF2-like domain BER92_RS19215 f453cebb923e872b8a0b161696cb4a20 220 Gene3D G3DSA:3.10.450.50 36 80 3.2E-19 T 16-09-2016 IPR032710 NTF2-like domain BER92_RS19215 f453cebb923e872b8a0b161696cb4a20 220 Gene3D G3DSA:1.10.10.640 181 212 2.0E-8 T 16-09-2016 IPR023094 Toluene tolerance protein, alpha-helical BER92_RS19215 f453cebb923e872b8a0b161696cb4a20 220 Gene3D G3DSA:1.10.10.640 82 121 2.0E-8 T 16-09-2016 IPR023094 Toluene tolerance protein, alpha-helical BER92_RS19215 f453cebb923e872b8a0b161696cb4a20 220 PIRSF PIRSF004649 9 219 3.1E-56 T 16-09-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC BER92_RS19215 f453cebb923e872b8a0b161696cb4a20 220 PANTHER PTHR36573 10 220 3.7E-74 T 16-09-2016 BER92_RS19215 f453cebb923e872b8a0b161696cb4a20 220 Pfam PF05494 MlaC protein 45 206 5.6E-38 T 16-09-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC BER92_RS03750 f5803f4feab825fa2bb9fff65e8f9d49 622 PANTHER PTHR30627 2 586 8.4E-238 T 16-09-2016 BER92_RS03750 f5803f4feab825fa2bb9fff65e8f9d49 622 SUPERFAMILY SSF56601 177 573 2.73E-94 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS03750 f5803f4feab825fa2bb9fff65e8f9d49 622 Gene3D G3DSA:3.90.1310.10 132 231 1.5E-30 T 16-09-2016 BER92_RS03750 f5803f4feab825fa2bb9fff65e8f9d49 622 Pfam PF03717 Penicillin-binding Protein dimerisation domain 62 209 4.8E-20 T 16-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BER92_RS03750 f5803f4feab825fa2bb9fff65e8f9d49 622 Gene3D G3DSA:3.40.710.10 232 551 4.2E-88 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS03750 f5803f4feab825fa2bb9fff65e8f9d49 622 SUPERFAMILY SSF56519 57 224 2.88E-47 T 16-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BER92_RS03750 f5803f4feab825fa2bb9fff65e8f9d49 622 PANTHER PTHR30627:SF1 2 586 8.4E-238 T 16-09-2016 BER92_RS03750 f5803f4feab825fa2bb9fff65e8f9d49 622 Pfam PF00905 Penicillin binding protein transpeptidase domain 250 546 2.6E-78 T 16-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 SMART SM01400 7 124 3.6E-67 T 16-09-2016 BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 8 123 6.1E-45 T 16-09-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 9 317 4.3E-115 T 16-09-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 Gene3D G3DSA:3.40.50.2020 3 162 2.6E-70 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 PANTHER PTHR10210:SF41 1 317 4.0E-179 T 16-09-2016 BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 PANTHER PTHR10210 1 317 4.0E-179 T 16-09-2016 BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 7 318 48.143 T 16-09-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 Gene3D G3DSA:3.40.50.2020 163 292 9.8E-52 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 SUPERFAMILY SSF53271 72 307 5.46E-61 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 132 147 - T 16-09-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 BER92_RS05055 41086834bae6a4ad0d32370addcb6164 319 Pfam PF14572 Phosphoribosyl synthetase-associated domain 208 317 8.5E-31 T 16-09-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 BER92_RS09385 de55cdda52793c0e6d2cedcb41ce0109 306 PANTHER PTHR31209 141 234 2.4E-18 T 16-09-2016 BER92_RS09385 de55cdda52793c0e6d2cedcb41ce0109 306 PIRSF PIRSF015283 1 306 1.9E-93 T 16-09-2016 IPR016631 Regulatory, RpfE BER92_RS04530 3bf24bd18ce0dce24b5c5a4f0e8060ec 185 PANTHER PTHR38666:SF1 1 185 7.3E-140 T 16-09-2016 BER92_RS04530 3bf24bd18ce0dce24b5c5a4f0e8060ec 185 Pfam PF11539 Protein of unknown function (DUF3228) 3 183 1.2E-61 T 16-09-2016 IPR021610 Protein of unknown function DUF3228 BER92_RS04530 3bf24bd18ce0dce24b5c5a4f0e8060ec 185 PANTHER PTHR38666 1 185 7.3E-140 T 16-09-2016 BER92_RS06470 1ae1617834f8491ed1a04f6510c26527 174 PANTHER PTHR37089:SF5 1 174 3.2E-77 T 16-09-2016 BER92_RS06470 1ae1617834f8491ed1a04f6510c26527 174 Pfam PF05229 Spore Coat Protein U domain 25 171 1.3E-33 T 16-09-2016 IPR007893 Spore coat protein U BER92_RS06470 1ae1617834f8491ed1a04f6510c26527 174 PANTHER PTHR37089 1 174 3.2E-77 T 16-09-2016 BER92_RS06470 1ae1617834f8491ed1a04f6510c26527 174 SMART SM00972 111 171 8.3E-20 T 16-09-2016 IPR007893 Spore coat protein U BER92_RS12935 35f43b6946bdcc41d5ee00d48f75d743 86 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 3.0E-16 T 16-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BER92_RS12935 35f43b6946bdcc41d5ee00d48f75d743 86 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 3.0E-16 T 16-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BER92_RS12935 35f43b6946bdcc41d5ee00d48f75d743 86 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 3.0E-16 T 16-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BER92_RS12935 35f43b6946bdcc41d5ee00d48f75d743 86 PANTHER PTHR34040:SF1 2 83 9.3E-32 T 16-09-2016 BER92_RS12935 35f43b6946bdcc41d5ee00d48f75d743 86 PANTHER PTHR34040 2 83 9.3E-32 T 16-09-2016 BER92_RS12935 35f43b6946bdcc41d5ee00d48f75d743 86 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 5 83 1.7E-26 T 16-09-2016 IPR006306 Type III secretion protein HrpO GO:0006810|GO:0016021 BER92_RS12935 35f43b6946bdcc41d5ee00d48f75d743 86 Pfam PF01313 Bacterial export proteins, family 3 6 76 2.7E-19 T 16-09-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BER92_RS04440 7d3f407e2db9c69ec56f40174ed0fd36 67 Pfam PF13586 Transposase DDE domain 5 56 1.3E-9 T 16-09-2016 IPR025668 Transposase DDE domain BER92_RS04440 7d3f407e2db9c69ec56f40174ed0fd36 67 PANTHER PTHR30007:SF17 1 56 8.5E-16 T 16-09-2016 BER92_RS04440 7d3f407e2db9c69ec56f40174ed0fd36 67 PANTHER PTHR30007 1 56 8.5E-16 T 16-09-2016 BER92_RS11535 6a6dc84eef798f6b0f68fd660e1af613 413 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 413 1.8E-139 T 16-09-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 BER92_RS11535 6a6dc84eef798f6b0f68fd660e1af613 413 Pfam PF02687 FtsX-like permease family 274 406 1.8E-15 T 16-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 BER92_RS11535 6a6dc84eef798f6b0f68fd660e1af613 413 PANTHER PTHR30489 1 413 6.7E-106 T 16-09-2016 BER92_RS11535 6a6dc84eef798f6b0f68fd660e1af613 413 PANTHER PTHR30489:SF8 1 413 6.7E-106 T 16-09-2016 BER92_RS11535 6a6dc84eef798f6b0f68fd660e1af613 413 Pfam PF12704 MacB-like periplasmic core domain 27 207 4.5E-16 T 16-09-2016 IPR025857 MacB-like periplasmic core domain BER92_RS16185 8012298746d8a79e8a06c2ec92cb8e8f 657 Gene3D G3DSA:1.25.20.10 33 381 3.5E-84 T 16-09-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 BER92_RS16185 8012298746d8a79e8a06c2ec92cb8e8f 657 PANTHER PTHR21666 459 642 2.5E-40 T 16-09-2016 BER92_RS16185 8012298746d8a79e8a06c2ec92cb8e8f 657 SUPERFAMILY SSF53955 475 632 1.03E-44 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS16185 8012298746d8a79e8a06c2ec92cb8e8f 657 Pfam PF14718 Soluble lytic murein transglycosylase L domain 399 457 8.3E-10 T 16-09-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 BER92_RS16185 8012298746d8a79e8a06c2ec92cb8e8f 657 Gene3D G3DSA:1.10.530.10 469 625 2.8E-46 T 16-09-2016 BER92_RS16185 8012298746d8a79e8a06c2ec92cb8e8f 657 SUPERFAMILY SSF48435 26 471 1.83E-100 T 16-09-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 BER92_RS16185 8012298746d8a79e8a06c2ec92cb8e8f 657 Pfam PF01464 Transglycosylase SLT domain 478 588 1.2E-24 T 16-09-2016 IPR008258 Transglycosylase SLT domain 1 BER92_RS16185 8012298746d8a79e8a06c2ec92cb8e8f 657 Gene3D G3DSA:1.10.1240.20 398 455 9.1E-8 T 16-09-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 BER92_RS05215 54346d2d9f1f3f497f183b0527b3a607 122 SMART SM01374 1 122 6.0E-88 T 16-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BER92_RS05215 54346d2d9f1f3f497f183b0527b3a607 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 1.5E-56 T 16-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BER92_RS05215 54346d2d9f1f3f497f183b0527b3a607 122 Gene3D G3DSA:2.40.150.20 1 122 1.2E-56 T 16-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BER92_RS05215 54346d2d9f1f3f497f183b0527b3a607 122 SUPERFAMILY SSF50193 1 122 4.19E-53 T 16-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BER92_RS05215 54346d2d9f1f3f497f183b0527b3a607 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.528 T 16-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BER92_RS05215 54346d2d9f1f3f497f183b0527b3a607 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 16-09-2016 IPR019972 Ribosomal protein L14P, conserved site BER92_RS05215 54346d2d9f1f3f497f183b0527b3a607 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 3.9E-59 T 16-09-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 BER92_RS05215 54346d2d9f1f3f497f183b0527b3a607 122 PANTHER PTHR11761 1 122 6.1E-79 T 16-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 Gene3D G3DSA:2.40.50.230 435 534 6.7E-29 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 Gene3D G3DSA:3.55.50.10 112 217 5.9E-29 T 16-09-2016 BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 PANTHER PTHR32305:SF7 16 542 1.3E-55 T 16-09-2016 BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 Pfam PF05954 Phage late control gene D protein (GPD) 44 355 9.9E-80 T 16-09-2016 BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 587 686 2.7E-27 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 35 608 1.0E-72 T 16-09-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 22 354 8.5E-60 T 16-09-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 SUPERFAMILY SSF69279 221 356 1.39E-16 T 16-09-2016 BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 SUPERFAMILY SSF69279 400 416 1.39E-16 T 16-09-2016 BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 SUPERFAMILY SSF69255 428 534 1.7E-22 T 16-09-2016 BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 PANTHER PTHR32305 16 542 1.3E-55 T 16-09-2016 BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 SUPERFAMILY SSF69279 22 213 5.67E-49 T 16-09-2016 BER92_RS15215 62b910efb92d9ca8c85b6deec784f687 916 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 721 882 4.4E-34 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS02770 78588cfd2646f8fa851a786e2502ccee 465 PANTHER PTHR31339:SF0 66 366 4.7E-67 T 16-09-2016 BER92_RS02770 78588cfd2646f8fa851a786e2502ccee 465 Pfam PF00295 Glycosyl hydrolases family 28 92 404 5.0E-45 T 16-09-2016 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 BER92_RS02770 78588cfd2646f8fa851a786e2502ccee 465 Gene3D G3DSA:2.160.20.10 56 416 3.9E-82 T 16-09-2016 IPR012334 Pectin lyase fold BER92_RS02770 78588cfd2646f8fa851a786e2502ccee 465 SUPERFAMILY SSF51126 55 414 5.74E-61 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS02770 78588cfd2646f8fa851a786e2502ccee 465 SMART SM00710 253 274 210.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS02770 78588cfd2646f8fa851a786e2502ccee 465 SMART SM00710 226 252 1400.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS02770 78588cfd2646f8fa851a786e2502ccee 465 SMART SM00710 279 299 520.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS02770 78588cfd2646f8fa851a786e2502ccee 465 SMART SM00710 305 335 130.0 T 16-09-2016 IPR006626 Parallel beta-helix repeat BER92_RS02770 78588cfd2646f8fa851a786e2502ccee 465 PANTHER PTHR31339 66 366 4.7E-67 T 16-09-2016 BER92_RS02345 0b5a5d70a67e4615e9a29afcba4090d6 225 PANTHER PTHR26402:SF552 1 223 5.7E-86 T 16-09-2016 BER92_RS02345 0b5a5d70a67e4615e9a29afcba4090d6 225 Pfam PF00072 Response regulator receiver domain 3 112 1.9E-26 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS02345 0b5a5d70a67e4615e9a29afcba4090d6 225 SUPERFAMILY SSF52172 2 174 1.99E-38 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS02345 0b5a5d70a67e4615e9a29afcba4090d6 225 SMART SM00448 1 113 2.9E-39 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS02345 0b5a5d70a67e4615e9a29afcba4090d6 225 PANTHER PTHR26402 1 223 5.7E-86 T 16-09-2016 BER92_RS02345 0b5a5d70a67e4615e9a29afcba4090d6 225 Gene3D G3DSA:3.40.50.2300 2 120 3.5E-36 T 16-09-2016 BER92_RS02345 0b5a5d70a67e4615e9a29afcba4090d6 225 SMART SM00862 146 220 2.8E-17 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS02345 0b5a5d70a67e4615e9a29afcba4090d6 225 Gene3D G3DSA:1.10.10.10 123 222 3.8E-23 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS02345 0b5a5d70a67e4615e9a29afcba4090d6 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 220 2.6E-17 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS10120 ec3c491c88aabdb1e8bd32578bab65e3 452 PANTHER PTHR33803 1 452 0.0 T 16-09-2016 BER92_RS10120 ec3c491c88aabdb1e8bd32578bab65e3 452 Pfam PF01609 Transposase DDE domain 281 418 1.3E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10120 ec3c491c88aabdb1e8bd32578bab65e3 452 PANTHER PTHR33803:SF1 1 452 0.0 T 16-09-2016 BER92_RS10120 ec3c491c88aabdb1e8bd32578bab65e3 452 Pfam PF05598 Transposase domain (DUF772) 56 130 2.3E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS09275 719db439ab4bd497755e1303ae5d2f08 476 PANTHER PTHR11785:SF342 152 473 1.1E-152 T 16-09-2016 BER92_RS09275 719db439ab4bd497755e1303ae5d2f08 476 PANTHER PTHR11785 152 473 1.1E-152 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS09275 719db439ab4bd497755e1303ae5d2f08 476 PIRSF PIRSF006060 11 474 8.8E-93 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS09275 719db439ab4bd497755e1303ae5d2f08 476 PANTHER PTHR11785 23 134 1.1E-152 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS09275 719db439ab4bd497755e1303ae5d2f08 476 PANTHER PTHR11785:SF342 23 134 1.1E-152 T 16-09-2016 BER92_RS09275 719db439ab4bd497755e1303ae5d2f08 476 Pfam PF13520 Amino acid permease 27 439 2.0E-60 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS10810 326ee7a42fffed9fe74f1eb5fd866d3d 222 Pfam PF01471 Putative peptidoglycan binding domain 14 51 7.9E-8 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS10810 326ee7a42fffed9fe74f1eb5fd866d3d 222 Gene3D G3DSA:1.10.101.10 13 54 9.0E-10 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS10810 326ee7a42fffed9fe74f1eb5fd866d3d 222 SUPERFAMILY SSF47090 13 55 6.75E-10 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS17770 1c1e73f55ae4e21b0159750c594cdea3 79 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 22 76 1.2E-19 T 16-09-2016 BER92_RS17770 1c1e73f55ae4e21b0159750c594cdea3 79 Gene3D G3DSA:1.10.357.10 4 76 1.6E-25 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS17770 1c1e73f55ae4e21b0159750c594cdea3 79 SUPERFAMILY SSF48498 18 76 9.64E-8 T 16-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 SMART SM00363 28 86 8.9E-10 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 PANTHER PTHR21600 27 337 4.9E-84 T 16-09-2016 BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 Pfam PF01479 S4 domain 28 73 2.6E-9 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 95 255 1.9E-49 T 16-09-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 Pfam PF00849 RNA pseudouridylate synthase 91 226 1.0E-16 T 16-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 PANTHER PTHR21600:SF2 27 337 4.9E-84 T 16-09-2016 BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 SUPERFAMILY SSF55174 25 114 2.5E-16 T 16-09-2016 BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 SUPERFAMILY SSF55120 87 259 3.36E-36 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 129 143 - T 16-09-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BER92_RS08910 5adbc2021e61907012c2b6931d72da89 543 Gene3D G3DSA:3.10.290.10 28 80 5.7E-15 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 PANTHER PTHR23382 1 328 7.1E-194 T 16-09-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 Gene3D G3DSA:3.90.110.10 157 327 1.4E-69 T 16-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 1 327 55.131 T 16-09-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 SUPERFAMILY SSF56327 159 327 4.94E-57 T 16-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 3 321 1.4E-140 T 16-09-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 Gene3D G3DSA:3.40.50.720 3 155 1.1E-55 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 154 2.5E-35 T 16-09-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 PIRSF PIRSF000102 1 325 6.3E-63 T 16-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 SUPERFAMILY SSF51735 3 157 1.58E-44 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02190 8dffd1535e0dc40cbf384fd365c9abb4 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 159 320 1.5E-29 T 16-09-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 Gene3D G3DSA:3.10.580.10 205 330 4.8E-42 T 16-09-2016 BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 SUPERFAMILY SSF53697 23 331 1.89E-69 T 16-09-2016 BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 Pfam PF00571 CBS domain 278 330 8.1E-8 T 16-09-2016 IPR000644 CBS domain BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 Pfam PF00571 CBS domain 219 267 6.7E-9 T 16-09-2016 IPR000644 CBS domain BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 Pfam PF01380 SIS domain 50 181 6.0E-31 T 16-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 Gene3D G3DSA:3.40.50.10490 22 204 6.3E-48 T 16-09-2016 BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 PANTHER PTHR11911:SF90 184 330 3.3E-44 T 16-09-2016 BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 PIRSF PIRSF004692 5 333 1.4E-132 T 16-09-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 SMART SM00116 219 267 5.4E-5 T 16-09-2016 IPR000644 CBS domain BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 SMART SM00116 284 332 6.0E-4 T 16-09-2016 IPR000644 CBS domain BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 PANTHER PTHR11911 184 330 3.3E-44 T 16-09-2016 BER92_RS13645 6291d3a87a6667a1ec38bad46350e267 333 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 54 323 4.2E-111 T 16-09-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 BER92_RS07835 c0706d20ec30064cb08c5dac5d28fc73 87 PANTHER PTHR39176:SF1 5 87 3.1E-12 T 16-09-2016 BER92_RS07835 c0706d20ec30064cb08c5dac5d28fc73 87 Pfam PF07007 Protein of unknown function (DUF1311) 5 84 3.1E-16 T 16-09-2016 IPR009739 Protein of unknown function DUF1311 BER92_RS07835 c0706d20ec30064cb08c5dac5d28fc73 87 PANTHER PTHR39176 5 87 3.1E-12 T 16-09-2016 BER92_RS08480 f37e9138b9040325cbf49f5ac55de983 228 Pfam PF11218 Protein of unknown function (DUF3011) 30 225 4.3E-88 T 16-09-2016 IPR021381 Protein of unknown function DUF3011 BER92_RS10235 cd8c31863ea0303476d4b07dc6c4691b 214 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 77 212 3.7E-41 T 16-09-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal BER92_RS10235 cd8c31863ea0303476d4b07dc6c4691b 214 SMART SM00858 89 151 3.5E-10 T 16-09-2016 IPR013974 SAF domain BER92_RS10235 cd8c31863ea0303476d4b07dc6c4691b 214 PANTHER PTHR36307 1 212 8.0E-43 T 16-09-2016 BER92_RS10235 cd8c31863ea0303476d4b07dc6c4691b 214 Pfam PF13144 Chaperone for flagella basal body P-ring formation 42 212 5.2E-42 T 16-09-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 Pfam PF13193 AMP-binding enzyme C-terminal domain 530 608 1.4E-25 T 16-09-2016 IPR025110 AMP-binding enzyme C-terminal domain BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 Gene3D G3DSA:3.40.50.980 266 423 4.6E-29 T 16-09-2016 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 644 52.513 T 16-09-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 PANTHER PTHR24095:SF178 11 644 0.0 T 16-09-2016 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 22 79 3.3E-21 T 16-09-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 Pfam PF00501 AMP-binding enzyme 81 521 4.8E-89 T 16-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 ProSitePatterns PS00455 Putative AMP-binding domain signature. 260 271 - T 16-09-2016 IPR020845 AMP-binding, conserved site BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 Gene3D G3DSA:3.40.50.980 77 265 5.5E-41 T 16-09-2016 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 SUPERFAMILY SSF56801 15 641 1.83E-180 T 16-09-2016 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 Gene3D G3DSA:2.30.38.10 439 514 1.0E-6 T 16-09-2016 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 PANTHER PTHR24095 11 644 0.0 T 16-09-2016 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 Gene3D G3DSA:3.30.300.30 517 637 1.1E-28 T 16-09-2016 BER92_RS01150 e078abe3f8a216e7689dd14bac0243aa 647 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 19 641 0.0 T 16-09-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 BER92_RS08825 316cad4b7368aeb2d0a334d77549a3e2 469 PANTHER PTHR33803:SF1 1 469 0.0 T 16-09-2016 BER92_RS08825 316cad4b7368aeb2d0a334d77549a3e2 469 PANTHER PTHR33803 1 469 0.0 T 16-09-2016 BER92_RS08825 316cad4b7368aeb2d0a334d77549a3e2 469 Pfam PF01609 Transposase DDE domain 298 435 4.9E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS08825 316cad4b7368aeb2d0a334d77549a3e2 469 Pfam PF05598 Transposase domain (DUF772) 73 147 3.2E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS16575 eec94f93c3971cd86f8183bf75a2339c 142 Pfam PF02566 OsmC-like protein 44 139 1.3E-19 T 16-09-2016 IPR003718 OsmC/Ohr family BER92_RS16575 eec94f93c3971cd86f8183bf75a2339c 142 SUPERFAMILY SSF82784 5 141 3.14E-46 T 16-09-2016 IPR003718 OsmC/Ohr family BER92_RS16575 eec94f93c3971cd86f8183bf75a2339c 142 PANTHER PTHR33797:SF2 2 141 3.4E-73 T 16-09-2016 BER92_RS16575 eec94f93c3971cd86f8183bf75a2339c 142 Gene3D G3DSA:3.30.300.20 49 141 8.6E-38 T 16-09-2016 IPR015946 K homology domain-like, alpha/beta BER92_RS16575 eec94f93c3971cd86f8183bf75a2339c 142 Gene3D G3DSA:2.20.25.10 4 48 9.8E-24 T 16-09-2016 BER92_RS16575 eec94f93c3971cd86f8183bf75a2339c 142 PANTHER PTHR33797 2 141 3.4E-73 T 16-09-2016 BER92_RS16575 eec94f93c3971cd86f8183bf75a2339c 142 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 8 140 3.5E-56 T 16-09-2016 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 Pfam PF13432 Tetratricopeptide repeat 325 382 0.0024 T 16-09-2016 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 PANTHER PTHR23083:SF195 91 382 2.6E-26 T 16-09-2016 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 SUPERFAMILY SSF48452 108 275 5.31E-14 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 Gene3D G3DSA:1.25.40.10 175 394 1.3E-24 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 Pfam PF13181 Tetratricopeptide repeat 112 137 0.2 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 SMART SM00028 355 387 150.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 SMART SM00028 321 354 12.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 SMART SM00028 107 140 150.0 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 SMART SM00028 180 213 0.072 T 16-09-2016 IPR019734 Tetratricopeptide repeat GO:0005515 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 PANTHER PTHR23083 91 382 2.6E-26 T 16-09-2016 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 SUPERFAMILY SSF48452 320 391 4.55E-8 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS00040 7d981f135f757bd852eb4031201af92f 398 Pfam PF09295 ChAPs (Chs5p-Arf1p-binding proteins) 145 248 1.2E-4 T 16-09-2016 IPR015374 Chs5p-Arf1p binding BER92_RS08985 73724bfaff95c52de796ddf39e865ea8 132 SUPERFAMILY SSF55729 1 118 6.13E-10 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS08985 73724bfaff95c52de796ddf39e865ea8 132 Gene3D G3DSA:3.40.630.30 80 121 5.3E-7 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS15395 e27d45ce44e3fe3cd756603a11dc8cd6 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS15395 e27d45ce44e3fe3cd756603a11dc8cd6 455 Pfam PF01609 Transposase DDE domain 284 421 2.6E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS15395 e27d45ce44e3fe3cd756603a11dc8cd6 455 Pfam PF05598 Transposase domain (DUF772) 59 133 1.5E-15 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS15395 e27d45ce44e3fe3cd756603a11dc8cd6 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS10885 4701911d50bf3f181a22463f5c1709a6 580 Gene3D G3DSA:3.20.20.80 94 386 4.2E-31 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS10885 4701911d50bf3f181a22463f5c1709a6 580 SUPERFAMILY SSF51445 93 414 4.66E-38 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS10885 4701911d50bf3f181a22463f5c1709a6 580 PANTHER PTHR23421 65 160 8.2E-36 T 16-09-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS10885 4701911d50bf3f181a22463f5c1709a6 580 PANTHER PTHR23421:SF84 65 160 8.2E-36 T 16-09-2016 BER92_RS10885 4701911d50bf3f181a22463f5c1709a6 580 Pfam PF02449 Beta-galactosidase 114 256 3.0E-6 T 16-09-2016 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS12605 09477da6d3d358486e1978fe0e9f301d 235 PANTHER PTHR32385 1 193 4.7E-25 T 16-09-2016 BER92_RS12605 09477da6d3d358486e1978fe0e9f301d 235 SUPERFAMILY SSF53448 27 175 8.06E-14 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS12605 09477da6d3d358486e1978fe0e9f301d 235 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 25 103 5.9E-8 T 16-09-2016 IPR007577 Glycosyltransferase, DXD sugar-binding motif BER92_RS07145 f7ceb14f932fb1eabc69c56e0557ce63 257 PANTHER PTHR11142 1 246 2.0E-84 T 16-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07145 f7ceb14f932fb1eabc69c56e0557ce63 257 PIRSF PIRSF001430 1 255 1.7E-63 T 16-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07145 f7ceb14f932fb1eabc69c56e0557ce63 257 SUPERFAMILY SSF55120 1 252 6.47E-80 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07145 f7ceb14f932fb1eabc69c56e0557ce63 257 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 245 30.875 T 16-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07145 f7ceb14f932fb1eabc69c56e0557ce63 257 Gene3D G3DSA:3.30.70.580 1 106 1.8E-30 T 16-09-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07145 f7ceb14f932fb1eabc69c56e0557ce63 257 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 239 3.9E-57 T 16-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07145 f7ceb14f932fb1eabc69c56e0557ce63 257 Gene3D G3DSA:3.30.70.660 108 240 1.1E-42 T 16-09-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07145 f7ceb14f932fb1eabc69c56e0557ce63 257 Pfam PF01416 tRNA pseudouridine synthase 144 241 2.4E-25 T 16-09-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07145 f7ceb14f932fb1eabc69c56e0557ce63 257 Pfam PF01416 tRNA pseudouridine synthase 8 104 2.0E-5 T 16-09-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 SUPERFAMILY SSF56059 114 314 1.15E-57 T 16-09-2016 BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 Gene3D G3DSA:3.30.1490.20 124 199 5.0E-27 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 397 5.8E-177 T 16-09-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 Gene3D G3DSA:3.40.50.20 4 121 8.0E-39 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 PANTHER PTHR11609 1 398 2.4E-215 T 16-09-2016 BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 80 1.5E-4 T 16-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 SUPERFAMILY SSF51246 325 396 1.88E-14 T 16-09-2016 IPR011054 Rudiment single hybrid motif BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 8 397 51.499 T 16-09-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 PANTHER PTHR11609:SF7 1 398 2.4E-215 T 16-09-2016 BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 SUPERFAMILY SSF52440 3 113 8.34E-33 T 16-09-2016 IPR016185 Pre-ATP-grasp domain BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 Gene3D G3DSA:3.30.470.20 200 393 2.3E-67 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS14940 d69be7e622b34de789ef10011833b1af 400 Pfam PF02222 ATP-grasp domain 124 295 7.7E-56 T 16-09-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 BER92_RS06890 90162111149822194176bfd2086054c9 246 Gene3D G3DSA:1.20.5.100 215 246 2.6E-12 T 16-09-2016 BER92_RS06890 90162111149822194176bfd2086054c9 246 PANTHER PTHR10266:SF3 16 164 5.1E-77 T 16-09-2016 BER92_RS06890 90162111149822194176bfd2086054c9 246 PANTHER PTHR10266 16 164 5.1E-77 T 16-09-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 BER92_RS06890 90162111149822194176bfd2086054c9 246 Gene3D G3DSA:1.10.760.10 21 211 1.4E-64 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS06890 90162111149822194176bfd2086054c9 246 PANTHER PTHR10266:SF3 189 246 5.1E-77 T 16-09-2016 BER92_RS06890 90162111149822194176bfd2086054c9 246 PRINTS PR00603 Cytochrome C1 signature 211 226 3.2E-11 T 16-09-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 BER92_RS06890 90162111149822194176bfd2086054c9 246 PRINTS PR00603 Cytochrome C1 signature 45 64 3.2E-11 T 16-09-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 BER92_RS06890 90162111149822194176bfd2086054c9 246 PRINTS PR00603 Cytochrome C1 signature 192 211 3.2E-11 T 16-09-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 BER92_RS06890 90162111149822194176bfd2086054c9 246 PRINTS PR00603 Cytochrome C1 signature 107 131 3.2E-11 T 16-09-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 BER92_RS06890 90162111149822194176bfd2086054c9 246 Pfam PF02167 Cytochrome C1 family 37 245 1.8E-22 T 16-09-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 BER92_RS06890 90162111149822194176bfd2086054c9 246 SUPERFAMILY SSF46626 30 210 5.65E-48 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS06890 90162111149822194176bfd2086054c9 246 PANTHER PTHR10266 189 246 5.1E-77 T 16-09-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 BER92_RS10875 3e08b522807f65a563edd16b2e5c0f7b 795 PANTHER PTHR31084:SF4 17 793 0.0 T 16-09-2016 BER92_RS10875 3e08b522807f65a563edd16b2e5c0f7b 795 Gene3D G3DSA:2.70.98.50 51 421 5.0E-135 T 16-09-2016 IPR027414 Glycosyl hydrolase family, N-terminal domain KEGG: 00511+3.2.1.51 BER92_RS10875 3e08b522807f65a563edd16b2e5c0f7b 795 PANTHER PTHR31084 17 793 0.0 T 16-09-2016 BER92_RS10875 3e08b522807f65a563edd16b2e5c0f7b 795 Pfam PF14498 Glycosyl hydrolase family 65, N-terminal domain 52 287 1.9E-69 T 16-09-2016 IPR027414 Glycosyl hydrolase family, N-terminal domain KEGG: 00511+3.2.1.51 BER92_RS10875 3e08b522807f65a563edd16b2e5c0f7b 795 PIRSF PIRSF007663 22 795 4.8E-298 T 16-09-2016 IPR016518 Alpha-L-fucosidase GO:0004560 KEGG: 00511+3.2.1.51 BER92_RS10875 3e08b522807f65a563edd16b2e5c0f7b 795 SUPERFAMILY SSF48208 294 772 1.45E-82 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS03990 95f645ff9d99e0956f60c172155ab603 592 PANTHER PTHR31616 5 590 4.0E-161 T 16-09-2016 BER92_RS03990 95f645ff9d99e0956f60c172155ab603 592 Gene3D G3DSA:1.50.10.10 217 588 2.1E-85 T 16-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 BER92_RS03990 95f645ff9d99e0956f60c172155ab603 592 Pfam PF00723 Glycosyl hydrolases family 15 219 489 7.8E-22 T 16-09-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 BER92_RS03990 95f645ff9d99e0956f60c172155ab603 592 PANTHER PTHR31616:SF2 5 590 4.0E-161 T 16-09-2016 BER92_RS03990 95f645ff9d99e0956f60c172155ab603 592 SUPERFAMILY SSF48208 204 588 1.36E-89 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS14565 2f3b868b3e06f6e3d1b32ddc9bb8fc20 409 SUPERFAMILY SSF51556 26 408 4.76E-47 T 16-09-2016 IPR032466 Metal-dependent hydrolase BER92_RS14565 2f3b868b3e06f6e3d1b32ddc9bb8fc20 409 PANTHER PTHR10443 125 407 1.2E-24 T 16-09-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 BER92_RS14565 2f3b868b3e06f6e3d1b32ddc9bb8fc20 409 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 75 405 1.4E-41 T 16-09-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 BER92_RS14565 2f3b868b3e06f6e3d1b32ddc9bb8fc20 409 Gene3D G3DSA:3.20.20.140 21 408 9.3E-65 T 16-09-2016 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 SUPERFAMILY SSF74653 106 182 2.75E-22 T 16-09-2016 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 Gene3D G3DSA:3.30.1150.10 97 185 2.8E-16 T 16-09-2016 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 PRINTS PR01217 Proline rich extensin signature 64 89 2.0E-9 T 16-09-2016 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 PRINTS PR01217 Proline rich extensin signature 46 63 2.0E-9 T 16-09-2016 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 PRINTS PR01217 Proline rich extensin signature 8 29 2.0E-9 T 16-09-2016 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 PRINTS PR01217 Proline rich extensin signature 29 45 2.0E-9 T 16-09-2016 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 108 185 2.1E-26 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 107 184 2.9E-23 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 PANTHER PTHR33446 1 185 1.8E-21 T 16-09-2016 BER92_RS00045 e9e5013a0bf7b23340e689e56085edb0 185 PANTHER PTHR33446:SF2 1 185 1.8E-21 T 16-09-2016 BER92_RS04740 589e7d9c5662cee988ce5382e84a8a35 323 PANTHER PTHR30004 1 322 5.1E-181 T 16-09-2016 BER92_RS04740 589e7d9c5662cee988ce5382e84a8a35 323 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 34 315 1.9E-97 T 16-09-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 BER92_RS04740 589e7d9c5662cee988ce5382e84a8a35 323 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 319 1.3E-114 T 16-09-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 BER92_RS04740 589e7d9c5662cee988ce5382e84a8a35 323 SUPERFAMILY SSF53659 4 321 3.68E-100 T 16-09-2016 BER92_RS04740 589e7d9c5662cee988ce5382e84a8a35 323 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 2 320 33.775 T 16-09-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 BER92_RS04740 589e7d9c5662cee988ce5382e84a8a35 323 PANTHER PTHR30004:SF5 1 322 5.1E-181 T 16-09-2016 BER92_RS04740 589e7d9c5662cee988ce5382e84a8a35 323 Gene3D G3DSA:3.40.718.10 2 321 1.6E-117 T 16-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 BER92_RS13745 2d423e7136ef159f44346c6af2728eae 338 Pfam PF02685 Glucokinase 20 335 8.1E-100 T 16-09-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BER92_RS13745 2d423e7136ef159f44346c6af2728eae 338 PANTHER PTHR30514:SF0 14 330 3.6E-57 T 16-09-2016 BER92_RS13745 2d423e7136ef159f44346c6af2728eae 338 Gene3D G3DSA:3.40.367.20 120 319 9.6E-62 T 16-09-2016 BER92_RS13745 2d423e7136ef159f44346c6af2728eae 338 SUPERFAMILY SSF53067 18 336 1.3E-48 T 16-09-2016 BER92_RS13745 2d423e7136ef159f44346c6af2728eae 338 PANTHER PTHR30514 14 330 3.6E-57 T 16-09-2016 BER92_RS12250 c3e5553286ff4c43fbe25a97c0dc55ec 260 PANTHER PTHR32251:SF17 1 258 1.0E-63 T 16-09-2016 BER92_RS12250 c3e5553286ff4c43fbe25a97c0dc55ec 260 PANTHER PTHR32251 1 258 1.0E-63 T 16-09-2016 BER92_RS12250 c3e5553286ff4c43fbe25a97c0dc55ec 260 Pfam PF06966 Protein of unknown function (DUF1295) 21 250 1.7E-77 T 16-09-2016 IPR010721 Protein of unknown function DUF1295 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 Pfam PF01590 GAF domain 40 167 2.9E-6 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 SUPERFAMILY SSF55874 252 397 3.54E-32 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 SMART SM00387 292 398 1.3E-19 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 SUPERFAMILY SSF47384 171 219 9.22E-6 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 PANTHER PTHR33121 12 169 1.2E-47 T 16-09-2016 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 Gene3D G3DSA:3.30.450.40 40 175 1.2E-11 T 16-09-2016 IPR029016 GAF domain-like BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 SUPERFAMILY SSF55781 40 175 1.13E-23 T 16-09-2016 IPR029016 GAF domain-like BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 Gene3D G3DSA:1.10.287.130 180 223 3.0E-4 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 SMART SM00065 38 180 1.9E-5 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 Gene3D G3DSA:3.30.565.10 252 397 1.6E-30 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 PANTHER PTHR33121:SF12 12 169 1.2E-47 T 16-09-2016 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 342 1.2E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 377 1.2E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 356 1.2E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 396 1.2E-8 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS16750 f444dfa6e55cd28e64e4ab169ce73530 398 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 295 397 3.6E-17 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS00805 b9b7493fc0d571e76970953a0b77cc97 118 Pfam PF16931 Putative phage holin 1 114 1.2E-32 T 16-09-2016 IPR032637 Putative phage holin-like BER92_RS01830 2b66066416fadf6ba20fca4ff0c84661 220 PANTHER PTHR20855:SF3 20 216 3.6E-42 T 16-09-2016 IPR005744 Hly-III GO:0016021|GO:0019835 BER92_RS01830 2b66066416fadf6ba20fca4ff0c84661 220 PANTHER PTHR20855 20 216 3.6E-42 T 16-09-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 BER92_RS01830 2b66066416fadf6ba20fca4ff0c84661 220 Pfam PF03006 Haemolysin-III related 22 207 1.4E-24 T 16-09-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 BER92_RS04700 6069143840c5397a4199f9dac9ffb5d4 163 PANTHER PTHR30373:SF3 2 160 1.2E-73 T 16-09-2016 BER92_RS04700 6069143840c5397a4199f9dac9ffb5d4 163 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 24 137 4.4E-12 T 16-09-2016 IPR007621 TPM domain BER92_RS04700 6069143840c5397a4199f9dac9ffb5d4 163 PANTHER PTHR30373 2 160 1.2E-73 T 16-09-2016 BER92_RS15480 d5d7e5237bb09083e45ca83ebb1c5781 248 PANTHER PTHR30399 10 248 4.6E-45 T 16-09-2016 BER92_RS15480 d5d7e5237bb09083e45ca83ebb1c5781 248 Pfam PF01863 Protein of unknown function DUF45 33 240 4.5E-58 T 16-09-2016 IPR002725 Protein of unknown function DUF45 BER92_RS05470 4b32fc74ed92e82b0e34064c9a758442 407 Pfam PF07916 TraG-like protein, N-terminal region 13 392 3.6E-75 T 16-09-2016 IPR012931 TraG-like, N-terminal BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 SUPERFAMILY SSF54631 66 201 2.91E-30 T 16-09-2016 BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 PANTHER PTHR22777:SF17 19 289 6.1E-109 T 16-09-2016 BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 SMART SM00116 141 189 1.9 T 16-09-2016 IPR000644 CBS domain BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 SMART SM00116 78 127 3.5 T 16-09-2016 IPR000644 CBS domain BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 Gene3D G3DSA:3.10.580.10 57 197 1.1E-18 T 16-09-2016 BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 SMART SM01091 207 285 1.1E-28 T 16-09-2016 IPR005170 Transporter-associated domain BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 Pfam PF03471 Transporter associated domain 209 282 1.8E-22 T 16-09-2016 IPR005170 Transporter-associated domain BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 PANTHER PTHR22777 19 289 6.1E-109 T 16-09-2016 BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 Pfam PF00571 CBS domain 137 189 5.3E-5 T 16-09-2016 IPR000644 CBS domain BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 Pfam PF00571 CBS domain 69 124 2.9E-5 T 16-09-2016 IPR000644 CBS domain BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 Gene3D G3DSA:3.30.465.10 198 285 2.2E-27 T 16-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 BER92_RS06850 28f959af6a16f6744f0026ce20fc4ec4 292 SUPERFAMILY SSF56176 206 290 9.54E-24 T 16-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 BER92_RS00455 521492ec984d5fffe84387cb87630a04 183 Gene3D G3DSA:3.30.420.10 108 178 7.9E-13 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS00455 521492ec984d5fffe84387cb87630a04 183 Pfam PF13276 HTH-like domain 46 99 6.6E-11 T 16-09-2016 IPR025948 HTH-like domain BER92_RS00455 521492ec984d5fffe84387cb87630a04 183 SUPERFAMILY SSF53098 107 178 3.03E-11 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS00455 521492ec984d5fffe84387cb87630a04 183 PANTHER PTHR24559:SF185 28 178 4.0E-76 T 16-09-2016 BER92_RS00455 521492ec984d5fffe84387cb87630a04 183 PANTHER PTHR24559 28 178 4.0E-76 T 16-09-2016 BER92_RS04745 023691b76788e51bef09743147539d00 466 Pfam PF09312 SurA N-terminal domain 31 148 6.1E-45 T 16-09-2016 IPR015391 SurA N-terminal BER92_RS04745 023691b76788e51bef09743147539d00 466 PANTHER PTHR10657 7 446 1.1E-267 T 16-09-2016 BER92_RS04745 023691b76788e51bef09743147539d00 466 Gene3D G3DSA:3.10.50.40 287 412 2.5E-34 T 16-09-2016 BER92_RS04745 023691b76788e51bef09743147539d00 466 Gene3D G3DSA:3.10.50.40 169 282 5.7E-27 T 16-09-2016 BER92_RS04745 023691b76788e51bef09743147539d00 466 SUPERFAMILY SSF54534 290 390 1.37E-27 T 16-09-2016 BER92_RS04745 023691b76788e51bef09743147539d00 466 Pfam PF13616 PPIC-type PPIASE domain 282 385 5.5E-25 T 16-09-2016 BER92_RS04745 023691b76788e51bef09743147539d00 466 PANTHER PTHR10657:SF16 7 446 1.1E-267 T 16-09-2016 BER92_RS04745 023691b76788e51bef09743147539d00 466 Hamap MF_01183 Chaperone SurA [surA]. 9 434 31.693 T 16-09-2016 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 BER92_RS04745 023691b76788e51bef09743147539d00 466 SUPERFAMILY SSF109998 31 203 1.73E-40 T 16-09-2016 IPR027304 Trigger factor/SurA domain BER92_RS04745 023691b76788e51bef09743147539d00 466 Pfam PF00639 PPIC-type PPIASE domain 181 275 1.3E-14 T 16-09-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 BER92_RS04745 023691b76788e51bef09743147539d00 466 SUPERFAMILY SSF54534 176 281 7.85E-25 T 16-09-2016 BER92_RS13580 0ffcf20cc58a7856c198bd7ac6b835e1 236 Pfam PF00483 Nucleotidyl transferase 2 120 2.0E-15 T 16-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 BER92_RS13580 0ffcf20cc58a7856c198bd7ac6b835e1 236 SUPERFAMILY SSF53448 1 231 2.48E-51 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS13580 0ffcf20cc58a7856c198bd7ac6b835e1 236 PANTHER PTHR22572 2 232 9.6E-43 T 16-09-2016 BER92_RS13580 0ffcf20cc58a7856c198bd7ac6b835e1 236 Gene3D G3DSA:3.90.550.10 1 233 1.4E-45 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS08250 ba38a6a72a7d745bd857d330f082c646 324 Gene3D G3DSA:1.10.3720.10 26 322 2.5E-37 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS08250 ba38a6a72a7d745bd857d330f082c646 324 PANTHER PTHR30425 7 324 3.5E-151 T 16-09-2016 BER92_RS08250 ba38a6a72a7d745bd857d330f082c646 324 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 25 317 5.5E-90 T 16-09-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 BER92_RS08250 ba38a6a72a7d745bd857d330f082c646 324 SUPERFAMILY SSF161098 33 311 5.23E-34 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS08250 ba38a6a72a7d745bd857d330f082c646 324 PANTHER PTHR30425:SF1 7 324 3.5E-151 T 16-09-2016 BER92_RS08250 ba38a6a72a7d745bd857d330f082c646 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 311 1.2E-14 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 Pfam PF13620 Carboxypeptidase regulatory-like domain 45 108 1.8E-7 T 16-09-2016 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 PANTHER PTHR30069 1 268 5.8E-13 T 16-09-2016 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 PANTHER PTHR30069 303 351 5.8E-13 T 16-09-2016 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 Gene3D G3DSA:2.60.40.10 34 85 7.2E-4 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 Gene3D G3DSA:2.170.130.10 114 246 2.2E-13 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 PANTHER PTHR30069:SF6 303 351 5.8E-13 T 16-09-2016 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 SUPERFAMILY SSF49452 29 108 3.53E-6 T 16-09-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 PANTHER PTHR30069:SF6 1 268 5.8E-13 T 16-09-2016 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 Gene3D G3DSA:2.40.170.20 483 528 1.1E-52 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 Gene3D G3DSA:2.40.170.20 305 448 1.1E-52 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 Gene3D G3DSA:2.40.170.20 247 273 1.1E-52 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 Gene3D G3DSA:2.40.170.20 568 1024 1.1E-52 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 Pfam PF07715 TonB-dependent Receptor Plug Domain 138 242 2.6E-11 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 SUPERFAMILY SSF56935 700 744 1.19E-73 T 16-09-2016 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 SUPERFAMILY SSF56935 796 911 1.19E-73 T 16-09-2016 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 SUPERFAMILY SSF56935 945 1024 1.19E-73 T 16-09-2016 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 SUPERFAMILY SSF56935 117 262 1.19E-73 T 16-09-2016 BER92_RS12400 ab4210b91eb741315ecbf0e0d5bf054f 1024 SUPERFAMILY SSF56935 302 649 1.19E-73 T 16-09-2016 BER92_RS07840 71515c6cc75abe3813d31f4655c0adca 212 Pfam PF01471 Putative peptidoglycan binding domain 1 58 6.6E-17 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS07840 71515c6cc75abe3813d31f4655c0adca 212 PANTHER PTHR35243 89 201 1.0E-13 T 16-09-2016 BER92_RS07840 71515c6cc75abe3813d31f4655c0adca 212 SUPERFAMILY SSF47090 1 64 2.51E-16 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS07840 71515c6cc75abe3813d31f4655c0adca 212 Gene3D G3DSA:1.10.101.10 1 64 9.9E-19 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS10455 cf55ea5d7fc506857a5659f62a77254f 551 Pfam PF00448 SRP54-type protein, GTPase domain 344 531 7.1E-37 T 16-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS10455 cf55ea5d7fc506857a5659f62a77254f 551 PANTHER PTHR11564 236 531 5.4E-75 T 16-09-2016 BER92_RS10455 cf55ea5d7fc506857a5659f62a77254f 551 SMART SM00962 342 533 3.6E-53 T 16-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 BER92_RS10455 cf55ea5d7fc506857a5659f62a77254f 551 SMART SM00382 341 535 2.0E-10 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS10455 cf55ea5d7fc506857a5659f62a77254f 551 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 214 430 3.0E-53 T 16-09-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 BER92_RS10455 cf55ea5d7fc506857a5659f62a77254f 551 PANTHER PTHR11564:SF3 236 531 5.4E-75 T 16-09-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 BER92_RS10455 cf55ea5d7fc506857a5659f62a77254f 551 SUPERFAMILY SSF52540 339 528 1.03E-32 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10455 cf55ea5d7fc506857a5659f62a77254f 551 Gene3D G3DSA:3.40.50.300 342 531 2.1E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13960 4292d17828f54e8b00c3b73387875a21 322 Pfam PF01609 Transposase DDE domain 135 310 4.0E-29 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS13960 4292d17828f54e8b00c3b73387875a21 322 PANTHER PTHR35604:SF2 2 322 1.7E-239 T 16-09-2016 BER92_RS13960 4292d17828f54e8b00c3b73387875a21 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS13960 4292d17828f54e8b00c3b73387875a21 322 PANTHER PTHR35604 2 322 1.7E-239 T 16-09-2016 BER92_RS03195 8ef979c5b44b664fd9a38e493e853534 257 Pfam PF07313 Protein of unknown function (DUF1460) 51 248 2.8E-70 T 16-09-2016 IPR010846 Protein of unknown function DUF1460 BER92_RS03195 8ef979c5b44b664fd9a38e493e853534 257 Gene3D G3DSA:2.30.260.10 129 255 1.3E-34 T 16-09-2016 IPR023360 Putative xylanase-like C-terminal BER92_RS03195 8ef979c5b44b664fd9a38e493e853534 257 Gene3D G3DSA:1.10.3670.10 23 128 2.4E-34 T 16-09-2016 BER92_RS03195 8ef979c5b44b664fd9a38e493e853534 257 SUPERFAMILY SSF54001 21 256 4.32E-75 T 16-09-2016 BER92_RS00640 ef3b133311e8795b173ec78c248385c6 329 PANTHER PTHR33446:SF1 1 326 4.0E-118 T 16-09-2016 BER92_RS00640 ef3b133311e8795b173ec78c248385c6 329 SUPERFAMILY SSF74653 248 314 9.16E-19 T 16-09-2016 BER92_RS00640 ef3b133311e8795b173ec78c248385c6 329 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 256 326 4.2E-16 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS00640 ef3b133311e8795b173ec78c248385c6 329 PRINTS PR01374 Gram-negative bacterial tonB protein signature 250 271 5.1E-9 T 16-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BER92_RS00640 ef3b133311e8795b173ec78c248385c6 329 PRINTS PR01374 Gram-negative bacterial tonB protein signature 271 289 5.1E-9 T 16-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BER92_RS00640 ef3b133311e8795b173ec78c248385c6 329 PRINTS PR01374 Gram-negative bacterial tonB protein signature 290 307 5.1E-9 T 16-09-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BER92_RS00640 ef3b133311e8795b173ec78c248385c6 329 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 254 323 1.2E-15 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS00640 ef3b133311e8795b173ec78c248385c6 329 PANTHER PTHR33446 1 326 4.0E-118 T 16-09-2016 BER92_RS00640 ef3b133311e8795b173ec78c248385c6 329 Gene3D G3DSA:3.30.1150.10 219 327 1.9E-14 T 16-09-2016 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 SUPERFAMILY SSF160113 354 400 3.53E-9 T 16-09-2016 IPR010879 Domain of unknown function DUF1508 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 PANTHER PTHR10055 1 336 4.4E-215 T 16-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 332 3.2E-87 T 16-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 Pfam PF00579 tRNA synthetases class I (W and Y) 3 283 5.5E-55 T 16-09-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 Gene3D G3DSA:1.10.240.10 211 298 2.7E-27 T 16-09-2016 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 Gene3D G3DSA:3.30.160.160 355 398 4.5E-4 T 16-09-2016 IPR010879 Domain of unknown function DUF1508 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 SUPERFAMILY SSF52374 4 332 3.38E-76 T 16-09-2016 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 333 36.379 T 16-09-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 150 171 1.7E-19 T 16-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 1.7E-19 T 16-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 202 212 1.7E-19 T 16-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 1.7E-19 T 16-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 PANTHER PTHR10055:SF11 1 336 4.4E-215 T 16-09-2016 BER92_RS01335 57b32318d200cf6f3a8e6814567bbc94 429 Gene3D G3DSA:3.40.50.620 3 210 3.4E-76 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 Pfam PF02321 Outer membrane efflux protein 300 481 1.0E-23 T 16-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 Pfam PF02321 Outer membrane efflux protein 82 272 1.4E-25 T 16-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 SUPERFAMILY SSF56954 12 43 9.68E-102 T 16-09-2016 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 SUPERFAMILY SSF56954 73 485 9.68E-102 T 16-09-2016 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 PANTHER PTHR30203 4 502 4.5E-212 T 16-09-2016 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 PANTHER PTHR30203:SF6 4 502 4.5E-212 T 16-09-2016 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 Gene3D G3DSA:1.20.1600.10 69 108 7.1E-93 T 16-09-2016 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 Gene3D G3DSA:1.20.1600.10 370 484 7.1E-93 T 16-09-2016 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 Gene3D G3DSA:1.20.1600.10 160 332 7.1E-93 T 16-09-2016 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 Gene3D G3DSA:2.20.200.10 119 159 3.0E-13 T 16-09-2016 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 Gene3D G3DSA:2.20.200.10 333 368 3.0E-13 T 16-09-2016 BER92_RS06545 6fecc9f1a7f25741c7871ad90d01d33f 504 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 26 483 8.4E-160 T 16-09-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 BER92_RS12480 e439f2f68f5834d1d3a233f89202c65f 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS12480 e439f2f68f5834d1d3a233f89202c65f 322 PANTHER PTHR35604 2 322 2.5E-241 T 16-09-2016 BER92_RS12480 e439f2f68f5834d1d3a233f89202c65f 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.4E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS12480 e439f2f68f5834d1d3a233f89202c65f 322 PANTHER PTHR35604:SF2 2 322 2.5E-241 T 16-09-2016 BER92_RS08005 daa48274fa067f1ee5419f413d6c08f5 562 PANTHER PTHR24221 14 360 2.9E-28 T 16-09-2016 BER92_RS08005 daa48274fa067f1ee5419f413d6c08f5 562 PANTHER PTHR24221 378 491 2.9E-28 T 16-09-2016 BER92_RS08005 daa48274fa067f1ee5419f413d6c08f5 562 Gene3D G3DSA:1.20.1560.10 14 317 9.6E-29 T 16-09-2016 BER92_RS08005 daa48274fa067f1ee5419f413d6c08f5 562 PANTHER PTHR24221:SF138 378 491 2.9E-28 T 16-09-2016 BER92_RS08005 daa48274fa067f1ee5419f413d6c08f5 562 SUPERFAMILY SSF90123 14 325 2.35E-32 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS08005 daa48274fa067f1ee5419f413d6c08f5 562 SUPERFAMILY SSF52540 374 528 5.18E-15 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08005 daa48274fa067f1ee5419f413d6c08f5 562 Gene3D G3DSA:3.40.50.300 373 527 1.8E-10 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08005 daa48274fa067f1ee5419f413d6c08f5 562 PANTHER PTHR24221:SF138 14 360 2.9E-28 T 16-09-2016 BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 PANTHER PTHR35790 1 162 6.1E-38 T 16-09-2016 BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 Gene3D G3DSA:1.10.10.10 3 152 3.0E-40 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 130 150 9.4E-11 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 96 9.4E-11 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 116 9.4E-11 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 80 9.4E-11 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 SMART SM00347 40 140 8.2E-16 T 16-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 Pfam PF12802 MarR family 45 104 4.5E-12 T 16-09-2016 BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 PANTHER PTHR35790:SF1 1 162 6.1E-38 T 16-09-2016 BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 SUPERFAMILY SSF46785 10 152 5.73E-32 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00560 a1aad494f1d340d2ccf0a9d214f162be 162 ProSitePatterns PS01117 MarR-type HTH domain signature. 79 113 - T 16-09-2016 IPR023187 Transcriptional regulator MarR-type, conserved site BER92_RS16540 6669af3e9ea152bb0f1c05a1bed80959 162 Pfam PF05598 Transposase domain (DUF772) 78 152 4.1E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS16540 6669af3e9ea152bb0f1c05a1bed80959 162 PANTHER PTHR33803:SF1 1 162 5.4E-94 T 16-09-2016 BER92_RS16540 6669af3e9ea152bb0f1c05a1bed80959 162 PANTHER PTHR33803 1 162 5.4E-94 T 16-09-2016 BER92_RS02065 20a6d301b50d0ccbc967d3d29164f33c 258 Gene3D G3DSA:3.40.50.10090 23 122 5.5E-10 T 16-09-2016 BER92_RS02065 20a6d301b50d0ccbc967d3d29164f33c 258 PANTHER PTHR38042 6 258 2.0E-69 T 16-09-2016 BER92_RS02065 20a6d301b50d0ccbc967d3d29164f33c 258 PANTHER PTHR38042:SF1 6 258 2.0E-69 T 16-09-2016 BER92_RS02065 20a6d301b50d0ccbc967d3d29164f33c 258 Pfam PF02602 Uroporphyrinogen-III synthase HemD 30 237 3.5E-20 T 16-09-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS02065 20a6d301b50d0ccbc967d3d29164f33c 258 SUPERFAMILY SSF69618 11 250 1.22E-42 T 16-09-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 Hamap MF_00564 Ribonuclease PH [rph]. 4 240 50.026 T 16-09-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 PANTHER PTHR11953 5 239 6.8E-81 T 16-09-2016 BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 SUPERFAMILY SSF55666 156 239 8.38E-25 T 16-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 Pfam PF03725 3' exoribonuclease family, domain 2 161 227 1.8E-9 T 16-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 SUPERFAMILY SSF54211 5 184 3.29E-45 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 5 239 7.2E-116 T 16-09-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 Gene3D G3DSA:3.30.230.70 9 239 2.9E-31 T 16-09-2016 IPR027408 PNPase/RNase PH domain BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 ProSitePatterns PS01277 Ribonuclease PH signature. 119 132 - T 16-09-2016 IPR018336 Ribonuclease PH, conserved site BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 PANTHER PTHR11953:SF0 5 239 6.8E-81 T 16-09-2016 BER92_RS03570 5880aa037ce59293e9690ecebeb5e5ad 241 Pfam PF01138 3' exoribonuclease family, domain 1 13 143 1.9E-22 T 16-09-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 BER92_RS08515 9e1ed0efc46abc0c680908e4bd8f91ff 287 SUPERFAMILY SSF53187 4 269 4.14E-81 T 16-09-2016 BER92_RS08515 9e1ed0efc46abc0c680908e4bd8f91ff 287 Pfam PF05013 N-formylglutamate amidohydrolase 15 233 2.3E-68 T 16-09-2016 IPR007709 N-formylglutamate amidohydrolase BER92_RS08515 9e1ed0efc46abc0c680908e4bd8f91ff 287 Gene3D G3DSA:3.40.630.40 2 272 2.5E-94 T 16-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 BER92_RS08515 9e1ed0efc46abc0c680908e4bd8f91ff 287 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 6 272 4.0E-130 T 16-09-2016 IPR010247 N-formylglutamate deformylase BER92_RS13640 0abb361f495f1857a4a1a9336f5b8bb3 75 SUPERFAMILY SSF82657 3 74 5.89E-24 T 16-09-2016 IPR002634 BolA protein BER92_RS13640 0abb361f495f1857a4a1a9336f5b8bb3 75 Pfam PF01722 BolA-like protein 20 74 1.5E-18 T 16-09-2016 IPR002634 BolA protein BER92_RS13640 0abb361f495f1857a4a1a9336f5b8bb3 75 PIRSF PIRSF003113 2 75 1.3E-22 T 16-09-2016 IPR002634 BolA protein BER92_RS13640 0abb361f495f1857a4a1a9336f5b8bb3 75 Gene3D G3DSA:3.30.300.90 3 74 6.3E-24 T 16-09-2016 IPR002634 BolA protein BER92_RS13640 0abb361f495f1857a4a1a9336f5b8bb3 75 PANTHER PTHR12735 18 74 2.0E-17 T 16-09-2016 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 PANTHER PTHR10992:SF827 187 293 1.7E-42 T 16-09-2016 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 PANTHER PTHR10992 187 293 1.7E-42 T 16-09-2016 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 Gene3D G3DSA:3.40.50.1820 3 293 2.9E-56 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 PIRSF PIRSF005539 1 300 4.6E-151 T 16-09-2016 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 57 68 4.7E-12 T 16-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 102 116 4.7E-12 T 16-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 30 38 4.7E-12 T 16-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 PANTHER PTHR10992:SF827 11 162 1.7E-42 T 16-09-2016 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 TIGRFAM TIGR01250 pro_imino_pep_2: proline-specific peptidase 4 291 4.7E-81 T 16-09-2016 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 PANTHER PTHR10992 11 162 1.7E-42 T 16-09-2016 BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 SUPERFAMILY SSF53474 7 292 2.32E-59 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS14595 3e5c1d4a186550dbe5f695c6c3d4c987 313 Pfam PF00561 alpha/beta hydrolase fold 29 279 3.2E-24 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 PANTHER PTHR21499:SF29 64 360 1.6E-67 T 16-09-2016 BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 PANTHER PTHR21499 64 360 1.6E-67 T 16-09-2016 BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 PIRSF PIRSF036497 17 362 4.2E-89 T 16-09-2016 IPR022697 Homoserine dehydrogenase lacking ACT domain GO:0004412 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 Gene3D G3DSA:3.30.360.10 184 339 9.5E-48 T 16-09-2016 BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 26 151 3.0E-9 T 16-09-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 SUPERFAMILY SSF55347 162 344 1.44E-42 T 16-09-2016 BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 Gene3D G3DSA:3.40.50.720 22 183 5.7E-38 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 Pfam PF00742 Homoserine dehydrogenase 162 357 9.7E-45 T 16-09-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 SUPERFAMILY SSF51735 21 184 6.62E-23 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS05835 d8be24440e94f1af33727f67bbc30f6b 362 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 208 230 - T 16-09-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 BER92_RS16705 c2e98f1683042d28fd58ad0c689c7a7a 355 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 261 9.7E-32 T 16-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BER92_RS16705 c2e98f1683042d28fd58ad0c689c7a7a 355 SUPERFAMILY SSF111369 52 267 2.09E-41 T 16-09-2016 BER92_RS16705 c2e98f1683042d28fd58ad0c689c7a7a 355 PANTHER PTHR30469:SF16 12 352 1.2E-165 T 16-09-2016 BER92_RS16705 c2e98f1683042d28fd58ad0c689c7a7a 355 Gene3D G3DSA:2.40.50.100 62 95 1.1E-12 T 16-09-2016 BER92_RS16705 c2e98f1683042d28fd58ad0c689c7a7a 355 Gene3D G3DSA:2.40.50.100 156 187 1.1E-12 T 16-09-2016 BER92_RS16705 c2e98f1683042d28fd58ad0c689c7a7a 355 PANTHER PTHR30469 12 352 1.2E-165 T 16-09-2016 BER92_RS16705 c2e98f1683042d28fd58ad0c689c7a7a 355 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 341 1.2E-77 T 16-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 SUPERFAMILY SSF47781 474 561 6.45E-27 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Gene3D G3DSA:1.10.150.310 503 634 2.9E-44 T 16-09-2016 IPR023097 Tex RuvX-like domain BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 SMART SM00316 653 724 1.3E-25 T 16-09-2016 IPR022967 RNA-binding domain, S1 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 SUPERFAMILY SSF158832 6 324 6.02E-113 T 16-09-2016 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Gene3D G3DSA:1.10.10.650 4 114 8.2E-45 T 16-09-2016 IPR023319 Tex-like protein, HTH domain BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 PANTHER PTHR10724 2 762 0.0 T 16-09-2016 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Pfam PF09371 Tex-like protein N-terminal domain 14 197 1.1E-66 T 16-09-2016 IPR018974 Tex-like protein, N-terminal BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 SUPERFAMILY SSF53098 325 473 4.55E-51 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 SUPERFAMILY SSF47781 564 636 2.02E-18 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 SMART SM00732 329 428 3.5E-35 T 16-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 SUPERFAMILY SSF50249 641 730 6.12E-25 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Pfam PF12836 Helix-hairpin-helix motif 495 559 4.5E-28 T 16-09-2016 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Pfam PF00575 S1 RNA binding domain 653 724 5.8E-21 T 16-09-2016 IPR003029 S1 domain GO:0003676 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Gene3D G3DSA:2.40.50.140 637 724 1.5E-28 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Pfam PF16921 Tex protein YqgF-like domain 329 455 4.4E-54 T 16-09-2016 IPR032639 Tex protein, YqgF-like domain BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 PANTHER PTHR10724:SF1 2 762 0.0 T 16-09-2016 BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Gene3D G3DSA:1.10.3500.10 455 500 1.3E-92 T 16-09-2016 IPR023323 Tex-like domain BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Gene3D G3DSA:1.10.3500.10 115 325 1.3E-92 T 16-09-2016 IPR023323 Tex-like domain BER92_RS11665 aa0f193511873a3f1f22fefc33fbfe76 787 Gene3D G3DSA:3.30.420.140 329 454 3.4E-53 T 16-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 Gene3D G3DSA:1.20.1440.90 287 407 7.6E-11 T 16-09-2016 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 SUPERFAMILY SSF51621 18 904 4.87E-256 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 PANTHER PTHR30523:SF0 14 904 0.0 T 16-09-2016 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 561 573 - T 16-09-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 Pfam PF00311 Phosphoenolpyruvate carboxylase 142 904 4.2E-221 T 16-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 PANTHER PTHR30523 14 904 0.0 T 16-09-2016 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 601 630 3.8E-51 T 16-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 404 424 3.8E-51 T 16-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 257 272 3.8E-51 T 16-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 146 159 3.8E-51 T 16-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 199 215 3.8E-51 T 16-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 559 579 3.8E-51 T 16-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 735 761 3.8E-51 T 16-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 10 904 17.107 T 16-09-2016 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS04560 ed5e04664cf7cba0fb6de9c6ea27bcaf 904 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 147 158 - T 16-09-2016 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BER92_RS05530 b9453fa8c1092027603ae8c532af75a6 980 Gene3D G3DSA:1.10.101.10 660 733 1.1E-18 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS05530 b9453fa8c1092027603ae8c532af75a6 980 Pfam PF01471 Putative peptidoglycan binding domain 666 723 5.1E-14 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS05530 b9453fa8c1092027603ae8c532af75a6 980 SUPERFAMILY SSF47090 659 729 6.59E-16 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 ProSitePatterns PS00617 RecF protein signature 1. 121 141 - T 16-09-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 PANTHER PTHR32182:SF0 1 361 5.5E-45 T 16-09-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 ProSitePatterns PS00618 RecF protein signature 2. 304 322 - T 16-09-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 338 5.0E-17 T 16-09-2016 IPR003395 RecF/RecN/SMC, N-terminal BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 368 82.663 T 16-09-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 SUPERFAMILY SSF52540 1 337 3.94E-28 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 PANTHER PTHR32182 1 361 5.5E-45 T 16-09-2016 BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 339 1.7E-74 T 16-09-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 Gene3D G3DSA:3.40.50.300 236 336 2.2E-24 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00020 431ed4c420f3af71772427ac37b0374b 368 Gene3D G3DSA:3.40.50.300 1 175 2.2E-24 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16565 930b911895aa57036708a10a7594d439 267 SUPERFAMILY SSF51430 2 259 3.54E-84 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS16565 930b911895aa57036708a10a7594d439 267 Gene3D G3DSA:3.20.20.100 1 261 3.7E-91 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS16565 930b911895aa57036708a10a7594d439 267 PANTHER PTHR11732 1 267 2.0E-166 T 16-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta BER92_RS16565 930b911895aa57036708a10a7594d439 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 16-09-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BER92_RS16565 930b911895aa57036708a10a7594d439 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 16-09-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BER92_RS16565 930b911895aa57036708a10a7594d439 267 Pfam PF00248 Aldo/keto reductase family 8 250 1.3E-49 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS16565 930b911895aa57036708a10a7594d439 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 9.3E-47 T 16-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BER92_RS16565 930b911895aa57036708a10a7594d439 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 9.3E-47 T 16-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BER92_RS16565 930b911895aa57036708a10a7594d439 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 9.3E-47 T 16-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BER92_RS16565 930b911895aa57036708a10a7594d439 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 9.3E-47 T 16-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BER92_RS16565 930b911895aa57036708a10a7594d439 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 9.3E-47 T 16-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BER92_RS16565 930b911895aa57036708a10a7594d439 267 PIRSF PIRSF000097 1 266 8.8E-69 T 16-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BER92_RS16565 930b911895aa57036708a10a7594d439 267 PANTHER PTHR11732:SF100 1 267 2.0E-166 T 16-09-2016 BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 SUPERFAMILY SSF51182 183 466 6.68E-89 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 Pfam PF01050 Mannose-6-phosphate isomerase 312 462 3.1E-75 T 16-09-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 Gene3D G3DSA:2.60.120.10 354 466 4.4E-48 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 PANTHER PTHR12526:SF387 349 466 1.4E-111 T 16-09-2016 BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 PANTHER PTHR12526:SF387 154 287 1.4E-111 T 16-09-2016 BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 Pfam PF00483 Nucleotidyl transferase 6 284 2.0E-76 T 16-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 Gene3D G3DSA:3.90.550.10 2 269 1.3E-105 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 SUPERFAMILY SSF53448 5 280 6.37E-73 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 5 466 1.1E-227 T 16-09-2016 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 PANTHER PTHR12526 349 466 1.4E-111 T 16-09-2016 BER92_RS15590 62ca4fba8c1024d6cc53d83ae2ae4295 467 PANTHER PTHR12526 154 287 1.4E-111 T 16-09-2016 BER92_RS00605 8a97c716cf81c5d19e8179b7dc545616 269 PANTHER PTHR30413:SF2 1 269 1.2E-150 T 16-09-2016 BER92_RS00605 8a97c716cf81c5d19e8179b7dc545616 269 PIRSF PIRSF006648 1 266 2.0E-31 T 16-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 BER92_RS00605 8a97c716cf81c5d19e8179b7dc545616 269 PANTHER PTHR30413 1 269 1.2E-150 T 16-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 BER92_RS00605 8a97c716cf81c5d19e8179b7dc545616 269 PRINTS PR00164 ABC-2 type transport system membrane protein signature 115 140 1.9E-5 T 16-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 BER92_RS00605 8a97c716cf81c5d19e8179b7dc545616 269 PRINTS PR00164 ABC-2 type transport system membrane protein signature 189 208 1.9E-5 T 16-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 BER92_RS00605 8a97c716cf81c5d19e8179b7dc545616 269 PRINTS PR00164 ABC-2 type transport system membrane protein signature 71 93 1.9E-5 T 16-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 BER92_RS00605 8a97c716cf81c5d19e8179b7dc545616 269 Pfam PF01061 ABC-2 type transporter 22 231 6.4E-35 T 16-09-2016 IPR013525 ABC-2 type transporter GO:0016020 BER92_RS07585 a20c2f753c6732decb85c3a977b5cfb1 217 PANTHER PTHR30055 1 178 8.2E-36 T 16-09-2016 BER92_RS07585 a20c2f753c6732decb85c3a977b5cfb1 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 5.3E-6 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS07585 a20c2f753c6732decb85c3a977b5cfb1 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 5.3E-6 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS07585 a20c2f753c6732decb85c3a977b5cfb1 217 SUPERFAMILY SSF46689 6 73 4.98E-13 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS07585 a20c2f753c6732decb85c3a977b5cfb1 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 61 1.9E-9 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS07585 a20c2f753c6732decb85c3a977b5cfb1 217 Gene3D G3DSA:1.10.357.10 4 200 9.5E-42 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS07585 a20c2f753c6732decb85c3a977b5cfb1 217 PANTHER PTHR30055:SF66 1 178 8.2E-36 T 16-09-2016 BER92_RS07585 a20c2f753c6732decb85c3a977b5cfb1 217 SUPERFAMILY SSF48498 80 202 5.34E-13 T 16-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal BER92_RS13185 6e2733df4e7da1779bdb2d41a05a515c 455 PANTHER PTHR33803:SF1 1 361 4.8E-254 T 16-09-2016 BER92_RS13185 6e2733df4e7da1779bdb2d41a05a515c 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS13185 6e2733df4e7da1779bdb2d41a05a515c 455 PANTHER PTHR33803 1 361 4.8E-254 T 16-09-2016 BER92_RS16985 a8e015e99e559835582fd369dc69d05d 153 Pfam PF14316 Domain of unknown function (DUF4381) 7 138 7.0E-31 T 16-09-2016 IPR025489 Protein of unknown function (DUF4381 BER92_RS16985 a8e015e99e559835582fd369dc69d05d 153 Gene3D G3DSA:1.20.140.10 20 95 3.4E-4 T 16-09-2016 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PANTHER PTHR10992 17 331 9.5E-98 T 16-09-2016 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PRINTS PR00111 Alpha/beta hydrolase fold signature 150 163 3.4E-11 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 106 3.4E-11 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PRINTS PR00111 Alpha/beta hydrolase fold signature 136 149 3.4E-11 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 Pfam PF00561 alpha/beta hydrolase fold 68 181 9.5E-22 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 SUPERFAMILY SSF53474 31 330 2.41E-60 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 Gene3D G3DSA:3.40.50.1820 28 327 1.3E-70 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PRINTS PR00412 Epoxide hydrolase signature 91 106 1.7E-5 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PRINTS PR00412 Epoxide hydrolase signature 71 89 1.7E-5 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PRINTS PR00412 Epoxide hydrolase signature 306 328 1.7E-5 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PRINTS PR00412 Epoxide hydrolase signature 150 163 1.7E-5 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PRINTS PR00412 Epoxide hydrolase signature 136 149 1.7E-5 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS05840 86396ea2f11aa558269ee31271f505f6 331 PANTHER PTHR10992:SF771 17 331 9.5E-98 T 16-09-2016 BER92_RS01295 e6f85b404373c4fff9baeafdec81c6ab 221 Pfam PF01609 Transposase DDE domain 135 221 6.3E-14 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01295 e6f85b404373c4fff9baeafdec81c6ab 221 PANTHER PTHR35604 2 221 1.4E-170 T 16-09-2016 BER92_RS01295 e6f85b404373c4fff9baeafdec81c6ab 221 PANTHER PTHR35604:SF2 2 221 1.4E-170 T 16-09-2016 BER92_RS01295 e6f85b404373c4fff9baeafdec81c6ab 221 Pfam PF05598 Transposase domain (DUF772) 50 122 1.1E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS18305 de1dce5f422752524d646c54004ada5c 158 Pfam PF10003 Integral membrane protein (DUF2244) 18 150 4.6E-32 T 16-09-2016 IPR019253 Protein of unknown function DUF2244, transmembrane BER92_RS10275 51874c6bb0ed86cc8b6c2cab16f084ee 230 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 227 24.849 T 16-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BER92_RS10275 51874c6bb0ed86cc8b6c2cab16f084ee 230 PANTHER PTHR34933:SF2 9 230 6.9E-103 T 16-09-2016 BER92_RS10275 51874c6bb0ed86cc8b6c2cab16f084ee 230 PANTHER PTHR34933 9 230 6.9E-103 T 16-09-2016 BER92_RS10275 51874c6bb0ed86cc8b6c2cab16f084ee 230 Pfam PF02107 Flagellar L-ring protein 48 228 2.2E-56 T 16-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BER92_RS10275 51874c6bb0ed86cc8b6c2cab16f084ee 230 PRINTS PR01008 Flagellar L-ring protein signature 190 204 2.7E-21 T 16-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BER92_RS10275 51874c6bb0ed86cc8b6c2cab16f084ee 230 PRINTS PR01008 Flagellar L-ring protein signature 70 82 2.7E-21 T 16-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BER92_RS10275 51874c6bb0ed86cc8b6c2cab16f084ee 230 PRINTS PR01008 Flagellar L-ring protein signature 143 158 2.7E-21 T 16-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BER92_RS10275 51874c6bb0ed86cc8b6c2cab16f084ee 230 PRINTS PR01008 Flagellar L-ring protein signature 169 185 2.7E-21 T 16-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BER92_RS10275 51874c6bb0ed86cc8b6c2cab16f084ee 230 PRINTS PR01008 Flagellar L-ring protein signature 206 220 2.7E-21 T 16-09-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BER92_RS17475 f4e3ddf57ecbbe31a4fa56a86b6fa6e0 504 PANTHER PTHR21432 1 502 3.1E-272 T 16-09-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 BER92_RS17475 f4e3ddf57ecbbe31a4fa56a86b6fa6e0 504 PANTHER PTHR21432:SF10 1 502 3.1E-272 T 16-09-2016 BER92_RS17475 f4e3ddf57ecbbe31a4fa56a86b6fa6e0 504 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 12 502 8.7E-233 T 16-09-2016 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 BER92_RS17475 f4e3ddf57ecbbe31a4fa56a86b6fa6e0 504 Gene3D G3DSA:3.40.1080.10 11 227 5.9E-47 T 16-09-2016 BER92_RS17475 f4e3ddf57ecbbe31a4fa56a86b6fa6e0 504 SUPERFAMILY SSF100950 231 502 7.91E-77 T 16-09-2016 BER92_RS17475 f4e3ddf57ecbbe31a4fa56a86b6fa6e0 504 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 13 221 3.0E-32 T 16-09-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 BER92_RS17475 f4e3ddf57ecbbe31a4fa56a86b6fa6e0 504 SUPERFAMILY SSF100950 4 228 1.29E-72 T 16-09-2016 BER92_RS17475 f4e3ddf57ecbbe31a4fa56a86b6fa6e0 504 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 323 469 6.2E-40 T 16-09-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain BER92_RS17475 f4e3ddf57ecbbe31a4fa56a86b6fa6e0 504 Gene3D G3DSA:3.40.810.20 232 497 4.0E-71 T 16-09-2016 BER92_RS04310 0f7e1fb7fe1b99db83a092bda75e0f04 368 Pfam PF03739 Predicted permease YjgP/YjgQ family 11 365 1.1E-70 T 16-09-2016 IPR005495 Permease LptG/LptF-related GO:0016021 BER92_RS04310 0f7e1fb7fe1b99db83a092bda75e0f04 368 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 8 365 8.9E-115 T 16-09-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 BER92_RS04310 0f7e1fb7fe1b99db83a092bda75e0f04 368 PANTHER PTHR33529:SF1 2 367 1.2E-124 T 16-09-2016 BER92_RS04310 0f7e1fb7fe1b99db83a092bda75e0f04 368 PANTHER PTHR33529 2 367 1.2E-124 T 16-09-2016 BER92_RS12080 2b2739eff9524455222e09ded8eaf28a 292 Gene3D G3DSA:3.30.2010.10 70 157 4.5E-32 T 16-09-2016 BER92_RS12080 2b2739eff9524455222e09ded8eaf28a 292 Hamap MF_00188 Protease HtpX [htpX]. 2 287 25.319 T 16-09-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 BER92_RS12080 2b2739eff9524455222e09ded8eaf28a 292 PANTHER PTHR10120 1 286 2.3E-94 T 16-09-2016 BER92_RS12080 2b2739eff9524455222e09ded8eaf28a 292 PANTHER PTHR10120:SF19 1 286 2.3E-94 T 16-09-2016 BER92_RS12080 2b2739eff9524455222e09ded8eaf28a 292 Pfam PF01435 Peptidase family M48 76 286 8.1E-40 T 16-09-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 PANTHER PTHR30473:SF2 5 185 1.4E-207 T 16-09-2016 BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 PANTHER PTHR30473:SF2 204 465 1.4E-207 T 16-09-2016 BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 Gene3D G3DSA:3.40.50.300 250 464 2.0E-61 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 SMART SM00670 6 145 7.3E-13 T 16-09-2016 IPR002716 PIN domain BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 PANTHER PTHR30473 204 465 1.4E-207 T 16-09-2016 BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 Pfam PF13638 PIN domain 8 158 8.8E-40 T 16-09-2016 IPR002716 PIN domain BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 SUPERFAMILY SSF88723 108 158 1.2E-11 T 16-09-2016 IPR029060 PIN domain-like BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 SUPERFAMILY SSF88723 7 67 1.2E-11 T 16-09-2016 IPR029060 PIN domain-like BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 Pfam PF02562 PhoH-like protein 253 454 3.9E-54 T 16-09-2016 IPR003714 PhoH-like protein GO:0005524 BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 Gene3D G3DSA:3.40.50.1010 108 161 1.4E-9 T 16-09-2016 IPR029060 PIN domain-like BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 Gene3D G3DSA:3.40.50.1010 8 66 1.4E-9 T 16-09-2016 IPR029060 PIN domain-like BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 PANTHER PTHR30473 5 185 1.4E-207 T 16-09-2016 BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 SUPERFAMILY SSF52540 129 189 1.53E-29 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 SUPERFAMILY SSF52540 252 338 1.53E-29 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10980 ac87c0250676667e5b706a3d531e8640 465 SUPERFAMILY SSF52540 370 444 1.53E-29 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18870 f1c7cc4cc013f83487f9f2a0e3762f0f 128 PANTHER PTHR30007 1 122 2.2E-21 T 16-09-2016 BER92_RS18870 f1c7cc4cc013f83487f9f2a0e3762f0f 128 PANTHER PTHR30007:SF0 1 122 2.2E-21 T 16-09-2016 BER92_RS18870 f1c7cc4cc013f83487f9f2a0e3762f0f 128 Pfam PF01609 Transposase DDE domain 2 118 1.5E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16355 07f476990040f7f4082445524b49b278 296 PANTHER PTHR22769:SF7 119 291 1.2E-59 T 16-09-2016 BER92_RS16355 07f476990040f7f4082445524b49b278 296 Gene3D G3DSA:3.90.79.10 118 293 4.1E-46 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS16355 07f476990040f7f4082445524b49b278 296 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 128 158 1.4E-8 T 16-09-2016 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 BER92_RS16355 07f476990040f7f4082445524b49b278 296 ProSitePatterns PS00893 Nudix box signature. 193 214 - T 16-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BER92_RS16355 07f476990040f7f4082445524b49b278 296 SUPERFAMILY SSF55811 113 292 3.38E-41 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS16355 07f476990040f7f4082445524b49b278 296 PANTHER PTHR22769 119 291 1.2E-59 T 16-09-2016 BER92_RS16355 07f476990040f7f4082445524b49b278 296 Pfam PF00293 NUDIX domain 164 267 2.9E-15 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS16355 07f476990040f7f4082445524b49b278 296 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 34 125 4.9E-7 T 16-09-2016 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 SUPERFAMILY SSF82866 291 490 9.29E-47 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 SUPERFAMILY SSF82693 136 181 4.45E-22 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 SUPERFAMILY SSF82693 268 324 4.45E-22 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 SUPERFAMILY SSF82693 556 653 5.75E-14 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 Gene3D G3DSA:3.30.70.1430 558 649 2.1E-7 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 Gene3D G3DSA:3.30.2090.10 709 793 1.3E-20 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 SUPERFAMILY SSF82714 709 793 2.88E-19 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PANTHER PTHR32063 1 1037 0.0 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 SUPERFAMILY SSF82714 182 265 5.49E-18 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 Pfam PF00873 AcrB/AcrD/AcrF family 4 1013 6.9E-301 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 SUPERFAMILY SSF82693 40 134 4.36E-23 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 Gene3D G3DSA:3.30.70.1430 40 141 3.0E-28 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PANTHER PTHR32063:SF14 1 1037 0.0 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 3.7E-77 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 3.7E-77 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 3.7E-77 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.7E-77 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.7E-77 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 3.7E-77 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 3.7E-77 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PRINTS PR00702 Acriflavin resistance protein family signature 615 629 3.7E-77 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 3.7E-77 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 Gene3D G3DSA:1.20.1640.10 286 499 4.8E-57 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 Gene3D G3DSA:3.30.2090.10 181 267 2.9E-23 T 16-09-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 SUPERFAMILY SSF82866 795 1016 7.59E-50 T 16-09-2016 BER92_RS16700 a1d8c033cb8d13554b6918c6d141d0bd 1041 Gene3D G3DSA:1.10.3850.10 801 1013 3.3E-64 T 16-09-2016 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 SUPERFAMILY SSF56784 25 233 1.63E-54 T 16-09-2016 IPR023214 HAD-like domain BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 150 166 1.7E-5 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 168 188 1.7E-5 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 119 132 1.7E-5 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 24 35 1.7E-5 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 88 199 5.9E-9 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 PANTHER PTHR18901 24 234 5.4E-102 T 16-09-2016 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 27 232 2.5E-74 T 16-09-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 Gene3D G3DSA:1.10.150.240 41 98 9.5E-5 T 16-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 Gene3D G3DSA:3.40.50.1000 25 40 5.3E-39 T 16-09-2016 IPR023214 HAD-like domain BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 Gene3D G3DSA:3.40.50.1000 99 233 5.3E-39 T 16-09-2016 IPR023214 HAD-like domain BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 PANTHER PTHR18901:SF24 24 234 5.4E-102 T 16-09-2016 BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 Pfam PF13419 Haloacid dehalogenase-like hydrolase 27 206 1.0E-30 T 16-09-2016 IPR023214 HAD-like domain BER92_RS11970 e729ae6c4d465e75776e2efb878f7329 241 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 94 206 1.8E-9 T 16-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 BER92_RS03390 ff58a9f0d6bffc021dbbae3633563d61 178 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.333 T 16-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 BER92_RS03390 ff58a9f0d6bffc021dbbae3633563d61 178 SUPERFAMILY SSF50324 7 174 1.44E-66 T 16-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 BER92_RS03390 ff58a9f0d6bffc021dbbae3633563d61 178 PANTHER PTHR10286 9 174 2.5E-73 T 16-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 BER92_RS03390 ff58a9f0d6bffc021dbbae3633563d61 178 Gene3D G3DSA:3.90.80.10 7 174 5.5E-61 T 16-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 BER92_RS03390 ff58a9f0d6bffc021dbbae3633563d61 178 Pfam PF00719 Inorganic pyrophosphatase 18 174 6.8E-52 T 16-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 BER92_RS19285 e3cd9f7a5ae26b139bf989bab7125de0 388 Gene3D G3DSA:3.30.750.80 73 173 2.6E-24 T 16-09-2016 BER92_RS19285 e3cd9f7a5ae26b139bf989bab7125de0 388 SUPERFAMILY SSF53335 79 384 3.08E-67 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS19285 e3cd9f7a5ae26b139bf989bab7125de0 388 PANTHER PTHR11061:SF12 7 388 2.6E-103 T 16-09-2016 BER92_RS19285 e3cd9f7a5ae26b139bf989bab7125de0 388 Gene3D G3DSA:2.30.130.10 12 69 2.5E-18 T 16-09-2016 IPR015947 PUA-like domain BER92_RS19285 e3cd9f7a5ae26b139bf989bab7125de0 388 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 169 300 6.7E-19 T 16-09-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 BER92_RS19285 e3cd9f7a5ae26b139bf989bab7125de0 388 SUPERFAMILY SSF88697 12 69 6.96E-11 T 16-09-2016 IPR015947 PUA-like domain BER92_RS19285 e3cd9f7a5ae26b139bf989bab7125de0 388 PANTHER PTHR11061 7 388 2.6E-103 T 16-09-2016 BER92_RS19285 e3cd9f7a5ae26b139bf989bab7125de0 388 Gene3D G3DSA:3.40.50.150 179 387 2.5E-57 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS19275 9a50678bae90afa5920e85d4f2d8d2dc 433 PANTHER PTHR11662:SF3 9 344 9.6E-132 T 16-09-2016 BER92_RS19275 9a50678bae90afa5920e85d4f2d8d2dc 433 SUPERFAMILY SSF103473 15 373 8.11E-66 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS19275 9a50678bae90afa5920e85d4f2d8d2dc 433 Gene3D G3DSA:1.20.1250.20 250 376 2.6E-11 T 16-09-2016 BER92_RS19275 9a50678bae90afa5920e85d4f2d8d2dc 433 Gene3D G3DSA:1.20.1250.20 17 223 1.7E-45 T 16-09-2016 BER92_RS19275 9a50678bae90afa5920e85d4f2d8d2dc 433 Pfam PF07690 Major Facilitator Superfamily 29 342 5.0E-44 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS19275 9a50678bae90afa5920e85d4f2d8d2dc 433 PANTHER PTHR11662 9 344 9.6E-132 T 16-09-2016 BER92_RS16625 8d5a5bb434051f39efed5f8f13e3611c 206 SUPERFAMILY SSF48498 87 202 2.23E-11 T 16-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal BER92_RS16625 8d5a5bb434051f39efed5f8f13e3611c 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 4.0E-11 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS16625 8d5a5bb434051f39efed5f8f13e3611c 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 4.0E-11 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS16625 8d5a5bb434051f39efed5f8f13e3611c 206 SUPERFAMILY SSF46689 10 92 2.41E-19 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16625 8d5a5bb434051f39efed5f8f13e3611c 206 PANTHER PTHR30055 4 205 1.4E-39 T 16-09-2016 BER92_RS16625 8d5a5bb434051f39efed5f8f13e3611c 206 PANTHER PTHR30055:SF27 4 205 1.4E-39 T 16-09-2016 BER92_RS16625 8d5a5bb434051f39efed5f8f13e3611c 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 6.2E-17 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS16625 8d5a5bb434051f39efed5f8f13e3611c 206 Gene3D G3DSA:1.10.357.10 7 203 1.4E-38 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS12105 e725e857a78e5c1c69a45360c6f30183 311 PANTHER PTHR41913:SF1 7 311 2.0E-82 T 16-09-2016 BER92_RS12105 e725e857a78e5c1c69a45360c6f30183 311 PANTHER PTHR41913 7 311 2.0E-82 T 16-09-2016 BER92_RS12105 e725e857a78e5c1c69a45360c6f30183 311 Pfam PF07920 Protein of unknown function (DUF1684) 169 305 4.0E-43 T 16-09-2016 IPR012467 Protein of unknown function DUF1684 BER92_RS11105 b1b4d1c3c863e8f1db1ed54d1ccc24cf 88 Gene3D G3DSA:1.10.10.60 17 85 3.5E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS11105 b1b4d1c3c863e8f1db1ed54d1ccc24cf 88 PANTHER PTHR33609 2 87 3.3E-39 T 16-09-2016 BER92_RS11105 b1b4d1c3c863e8f1db1ed54d1ccc24cf 88 Pfam PF01527 Transposase 2 70 5.7E-20 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS11105 b1b4d1c3c863e8f1db1ed54d1ccc24cf 88 PANTHER PTHR33609:SF1 2 87 3.3E-39 T 16-09-2016 BER92_RS11105 b1b4d1c3c863e8f1db1ed54d1ccc24cf 88 SUPERFAMILY SSF46689 1 70 7.08E-13 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS05800 3dd43345f6230599deb46b057cd104b3 651 PANTHER PTHR30441:SF2 5 651 3.7E-130 T 16-09-2016 BER92_RS05800 3dd43345f6230599deb46b057cd104b3 651 PANTHER PTHR30441 5 651 3.7E-130 T 16-09-2016 BER92_RS05800 3dd43345f6230599deb46b057cd104b3 651 Pfam PF05170 AsmA family 27 549 4.9E-49 T 16-09-2016 IPR007844 AsmA BER92_RS18020 0a11cf8b7e9ab60df165a0285949db32 274 Pfam PF07722 Peptidase C26 11 243 5.3E-46 T 16-09-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 BER92_RS18020 0a11cf8b7e9ab60df165a0285949db32 274 PANTHER PTHR11922:SF18 68 82 4.5E-37 T 16-09-2016 BER92_RS18020 0a11cf8b7e9ab60df165a0285949db32 274 PANTHER PTHR11922:SF18 106 266 4.5E-37 T 16-09-2016 BER92_RS18020 0a11cf8b7e9ab60df165a0285949db32 274 SUPERFAMILY SSF52317 56 85 6.33E-27 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS18020 0a11cf8b7e9ab60df165a0285949db32 274 SUPERFAMILY SSF52317 113 263 6.33E-27 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS18020 0a11cf8b7e9ab60df165a0285949db32 274 PANTHER PTHR11922 68 82 4.5E-37 T 16-09-2016 BER92_RS18020 0a11cf8b7e9ab60df165a0285949db32 274 PANTHER PTHR11922 106 266 4.5E-37 T 16-09-2016 BER92_RS18020 0a11cf8b7e9ab60df165a0285949db32 274 Gene3D G3DSA:3.40.50.880 10 266 2.2E-33 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS00955 c1b8030a7388339556ef6ee78c087b4a 500 Pfam PF03703 Bacterial PH domain 70 149 8.9E-19 T 16-09-2016 IPR005182 Domain of unknown function DUF304 BER92_RS00955 c1b8030a7388339556ef6ee78c087b4a 500 Pfam PF03703 Bacterial PH domain 409 481 6.2E-13 T 16-09-2016 IPR005182 Domain of unknown function DUF304 BER92_RS00955 c1b8030a7388339556ef6ee78c087b4a 500 Pfam PF03703 Bacterial PH domain 259 317 1.3E-7 T 16-09-2016 IPR005182 Domain of unknown function DUF304 BER92_RS00955 c1b8030a7388339556ef6ee78c087b4a 500 PIRSF PIRSF026631 8 500 5.5E-124 T 16-09-2016 IPR014529 Uncharacterised conserved protein UCP026631 BER92_RS00955 c1b8030a7388339556ef6ee78c087b4a 500 PANTHER PTHR34473 10 476 5.9E-140 T 16-09-2016 BER92_RS00955 c1b8030a7388339556ef6ee78c087b4a 500 PANTHER PTHR34473:SF1 10 476 5.9E-140 T 16-09-2016 BER92_RS09775 472a27c1c0e2ecf5191f662f26c9c2ee 162 PANTHER PTHR38096 22 152 5.3E-25 T 16-09-2016 BER92_RS16370 472a27c1c0e2ecf5191f662f26c9c2ee 162 PANTHER PTHR38096 22 152 5.3E-25 T 16-09-2016 BER92_RS02760 dded1c5ca95654b0aea7cd31f2ba4340 686 SUPERFAMILY SSF56519 62 247 1.57E-46 T 16-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BER92_RS02760 dded1c5ca95654b0aea7cd31f2ba4340 686 PANTHER PTHR30627:SF2 5 644 1.9E-233 T 16-09-2016 BER92_RS02760 dded1c5ca95654b0aea7cd31f2ba4340 686 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 233 1.8E-40 T 16-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BER92_RS02760 dded1c5ca95654b0aea7cd31f2ba4340 686 Gene3D G3DSA:3.90.1310.10 130 247 2.2E-31 T 16-09-2016 BER92_RS02760 dded1c5ca95654b0aea7cd31f2ba4340 686 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 19 607 5.5E-205 T 16-09-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 BER92_RS02760 dded1c5ca95654b0aea7cd31f2ba4340 686 Gene3D G3DSA:3.40.710.10 249 608 7.7E-98 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS02760 dded1c5ca95654b0aea7cd31f2ba4340 686 SUPERFAMILY SSF56601 250 607 4.43E-91 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS02760 dded1c5ca95654b0aea7cd31f2ba4340 686 PANTHER PTHR30627 5 644 1.9E-233 T 16-09-2016 BER92_RS02760 dded1c5ca95654b0aea7cd31f2ba4340 686 Pfam PF00905 Penicillin binding protein transpeptidase domain 266 604 2.0E-62 T 16-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BER92_RS15135 3ce68e620540a4d18d73c018e5acd790 398 SUPERFAMILY SSF103473 3 390 1.96E-36 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS15135 3ce68e620540a4d18d73c018e5acd790 398 Pfam PF07690 Major Facilitator Superfamily 21 269 3.3E-17 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS15135 3ce68e620540a4d18d73c018e5acd790 398 PANTHER PTHR23546 1 396 6.5E-93 T 16-09-2016 BER92_RS15135 3ce68e620540a4d18d73c018e5acd790 398 Gene3D G3DSA:1.20.1250.20 3 184 2.5E-21 T 16-09-2016 BER92_RS15135 3ce68e620540a4d18d73c018e5acd790 398 Gene3D G3DSA:1.20.1250.20 218 391 2.0E-10 T 16-09-2016 BER92_RS15135 3ce68e620540a4d18d73c018e5acd790 398 PANTHER PTHR23546:SF1 1 396 6.5E-93 T 16-09-2016 BER92_RS10435 2c1d0a07c39d1446b6976dd35f8c6ebc 232 SUPERFAMILY SSF55073 4 137 3.06E-31 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS10435 2c1d0a07c39d1446b6976dd35f8c6ebc 232 PANTHER PTHR10799 19 135 1.6E-15 T 16-09-2016 BER92_RS10435 2c1d0a07c39d1446b6976dd35f8c6ebc 232 PANTHER PTHR10799:SF750 19 135 1.6E-15 T 16-09-2016 BER92_RS10435 2c1d0a07c39d1446b6976dd35f8c6ebc 232 SMART SM00267 2 143 2.2E-17 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10435 2c1d0a07c39d1446b6976dd35f8c6ebc 232 Gene3D G3DSA:3.30.70.270 4 137 1.7E-32 T 16-09-2016 BER92_RS10435 2c1d0a07c39d1446b6976dd35f8c6ebc 232 Pfam PF00990 Diguanylate cyclase, GGDEF domain 4 135 1.0E-27 T 16-09-2016 IPR000160 GGDEF domain BER92_RS10435 2c1d0a07c39d1446b6976dd35f8c6ebc 232 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 4 138 6.2E-27 T 16-09-2016 IPR000160 GGDEF domain BER92_RS02790 536d78d763391f6692151f3b013b1fe1 353 Pfam PF09982 Uncharacterized protein conserved in bacteria (DUF2219) 44 350 1.6E-90 T 16-09-2016 IPR018707 Protein of unknown function DUF2219 BER92_RS02790 536d78d763391f6692151f3b013b1fe1 353 Gene3D G3DSA:2.40.128.140 36 350 8.9E-106 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 170 183 7.5E-14 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 48 57 7.5E-14 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 7.5E-14 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PANTHER PTHR11922 1 192 4.6E-95 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00097 Anthranilate synthase component II signature 75 86 3.0E-36 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00097 Anthranilate synthase component II signature 48 57 3.0E-36 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00097 Anthranilate synthase component II signature 100 108 3.0E-36 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00097 Anthranilate synthase component II signature 170 183 3.0E-36 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00097 Anthranilate synthase component II signature 120 132 3.0E-36 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00097 Anthranilate synthase component II signature 3 17 3.0E-36 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 4.5E-5 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 45 59 4.5E-5 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 Gene3D G3DSA:3.40.50.880 1 192 4.3E-67 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 193 9.2E-80 T 16-09-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 PANTHER PTHR11922:SF7 1 192 4.6E-95 T 16-09-2016 BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 SUPERFAMILY SSF52317 1 192 9.93E-55 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS17985 4d6b556c3f6e9cdf3c2ea11f80f5cbc2 193 Pfam PF00117 Glutamine amidotransferase class-I 5 191 2.3E-54 T 16-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 PANTHER PTHR26402:SF576 3 225 2.9E-137 T 16-09-2016 BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.4E-25 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 Gene3D G3DSA:3.40.50.2300 3 127 1.4E-40 T 16-09-2016 BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 Gene3D G3DSA:1.10.10.10 128 226 1.4E-32 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 Pfam PF00072 Response regulator receiver domain 5 117 6.1E-25 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 SMART SM00448 3 116 1.2E-41 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 SUPERFAMILY SSF46894 127 225 2.01E-29 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 PANTHER PTHR26402 3 225 2.9E-137 T 16-09-2016 BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 SUPERFAMILY SSF52172 3 125 6.4E-42 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 2 226 4.1E-112 T 16-09-2016 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 BER92_RS15305 03ccd4161caa66f124b99c07dc024e5d 229 SMART SM00862 150 225 6.1E-28 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS04685 e433d2694e76e2613349991f0e69cc76 432 PANTHER PTHR10590 11 429 9.7E-197 T 16-09-2016 IPR008276 Concentrative nucleoside transporter GO:0005337|GO:0016020|GO:1901642 Reactome: REACT_15518|Reactome: REACT_1698 BER92_RS04685 e433d2694e76e2613349991f0e69cc76 432 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 209 428 1.0E-74 T 16-09-2016 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 BER92_RS04685 e433d2694e76e2613349991f0e69cc76 432 Pfam PF07670 Nucleoside recognition 98 197 4.7E-7 T 16-09-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 BER92_RS04685 e433d2694e76e2613349991f0e69cc76 432 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 13 86 4.8E-25 T 16-09-2016 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PANTHER PTHR10422:SF27 5 532 0.0 T 16-09-2016 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 SUPERFAMILY SSF81442 17 522 1.07E-188 T 16-09-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 247 301 - T 16-09-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 28 469 3.7E-149 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 Gene3D G3DSA:1.20.210.10 8 524 1.4E-217 T 16-09-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 20 521 2.0E-207 T 16-09-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PANTHER PTHR10422 5 532 0.0 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 165 183 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 93 117 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 194 213 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 136 148 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 66 89 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 315 336 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 19 44 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 428 449 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 350 368 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 245 266 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 378 397 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS18295 66e865ccdfb02217b7acddc67fcd1904 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 291 306 3.8E-124 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS03270 733706f7c937fa7f148849aadd6c0493 438 PANTHER PTHR23417 8 119 1.2E-131 T 16-09-2016 BER92_RS03270 733706f7c937fa7f148849aadd6c0493 438 PANTHER PTHR23417:SF2 138 148 1.2E-131 T 16-09-2016 BER92_RS03270 733706f7c937fa7f148849aadd6c0493 438 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 42 219 1.2E-64 T 16-09-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 BER92_RS03270 733706f7c937fa7f148849aadd6c0493 438 PANTHER PTHR23417 138 148 1.2E-131 T 16-09-2016 BER92_RS03270 733706f7c937fa7f148849aadd6c0493 438 PANTHER PTHR23417:SF2 8 119 1.2E-131 T 16-09-2016 BER92_RS03270 733706f7c937fa7f148849aadd6c0493 438 PANTHER PTHR23417 198 434 1.2E-131 T 16-09-2016 BER92_RS03270 733706f7c937fa7f148849aadd6c0493 438 PANTHER PTHR23417:SF2 198 434 1.2E-131 T 16-09-2016 BER92_RS03270 733706f7c937fa7f148849aadd6c0493 438 SUPERFAMILY SSF53756 58 411 1.67E-17 T 16-09-2016 BER92_RS11710 518f032cbe22901f4a63813bf790676b 169 PANTHER PTHR38774:SF1 2 155 1.5E-58 T 16-09-2016 BER92_RS11710 518f032cbe22901f4a63813bf790676b 169 PANTHER PTHR38774 2 155 1.5E-58 T 16-09-2016 BER92_RS11710 518f032cbe22901f4a63813bf790676b 169 Pfam PF06853 Protein of unknown function (DUF1249) 31 145 1.1E-26 T 16-09-2016 IPR009659 Protein of unknown function DUF1249 BER92_RS10100 ba92d2a15dd58cbfcae55db9c7cd05bc 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.9E-14 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS10100 ba92d2a15dd58cbfcae55db9c7cd05bc 210 SUPERFAMILY SSF46689 8 74 1.64E-17 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10100 ba92d2a15dd58cbfcae55db9c7cd05bc 210 PANTHER PTHR30055 1 171 1.4E-46 T 16-09-2016 BER92_RS10100 ba92d2a15dd58cbfcae55db9c7cd05bc 210 SUPERFAMILY SSF48498 83 205 1.65E-28 T 16-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal BER92_RS10100 ba92d2a15dd58cbfcae55db9c7cd05bc 210 Gene3D G3DSA:1.10.357.10 8 200 3.0E-37 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS10100 ba92d2a15dd58cbfcae55db9c7cd05bc 210 PANTHER PTHR30055:SF73 1 171 1.4E-46 T 16-09-2016 BER92_RS10100 ba92d2a15dd58cbfcae55db9c7cd05bc 210 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 56 - T 16-09-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BER92_RS10100 ba92d2a15dd58cbfcae55db9c7cd05bc 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 7.3E-8 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS10100 ba92d2a15dd58cbfcae55db9c7cd05bc 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 7.3E-8 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 Gene3D G3DSA:1.10.8.60 347 455 4.9E-36 T 16-09-2016 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 Gene3D G3DSA:3.40.50.300 255 343 4.5E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 Gene3D G3DSA:3.40.50.300 9 115 4.5E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 347 415 4.3E-6 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 Pfam PF07724 AAA domain (Cdc48 subfamily) 199 341 9.7E-41 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 SUPERFAMILY SSF52540 9 453 1.58E-89 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 PANTHER PTHR11262:SF3 4 110 4.9E-206 T 16-09-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 PANTHER PTHR11262:SF3 228 455 4.9E-206 T 16-09-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 9 455 1.1E-202 T 16-09-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 Gene3D G3DSA:1.10.8.10 223 253 2.4E-28 T 16-09-2016 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 Gene3D G3DSA:1.10.8.10 116 188 2.4E-28 T 16-09-2016 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 58 141 6.0E-7 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 SMART SM01086 347 446 1.4E-24 T 16-09-2016 IPR019489 Clp ATPase, C-terminal BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 PANTHER PTHR11262 4 110 4.9E-206 T 16-09-2016 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 PANTHER PTHR11262 228 455 4.9E-206 T 16-09-2016 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 6 455 43.753 T 16-09-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BER92_RS02690 0a6b350653b5cada67b56a46c78c9aaf 455 SMART SM00382 54 344 1.1E-10 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS14295 09804463c7f0f0402f279187b401383e 143 Pfam PF05598 Transposase domain (DUF772) 50 122 4.4E-20 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS14295 09804463c7f0f0402f279187b401383e 143 PANTHER PTHR35604 2 143 1.3E-103 T 16-09-2016 BER92_RS14295 09804463c7f0f0402f279187b401383e 143 PANTHER PTHR35604:SF2 2 143 1.3E-103 T 16-09-2016 BER92_RS15535 5be01716ad22346d758b3c4a5c8cbe2e 419 Pfam PF12821 Threonine/Serine exporter, ThrE 289 410 4.0E-13 T 16-09-2016 IPR024528 Threonine/Serine exporter, ThrE BER92_RS15535 5be01716ad22346d758b3c4a5c8cbe2e 419 PANTHER PTHR31082 15 419 4.9E-93 T 16-09-2016 BER92_RS15535 5be01716ad22346d758b3c4a5c8cbe2e 419 Pfam PF06738 Putative threonine/serine exporter 21 263 3.7E-52 T 16-09-2016 IPR010619 Putative threonine/serine exporter BER92_RS15555 fd474343b65c0fdea67ffa2e8d663e2e 214 Gene3D G3DSA:3.40.50.10610 22 209 1.9E-62 T 16-09-2016 IPR005586 ABC-type transport auxiliary lipoprotein component BER92_RS15555 fd474343b65c0fdea67ffa2e8d663e2e 214 SUPERFAMILY SSF159594 34 200 4.97E-44 T 16-09-2016 BER92_RS15555 fd474343b65c0fdea67ffa2e8d663e2e 214 PANTHER PTHR36698:SF1 1 214 2.9E-88 T 16-09-2016 BER92_RS15555 fd474343b65c0fdea67ffa2e8d663e2e 214 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 35 195 9.7E-37 T 16-09-2016 IPR005586 ABC-type transport auxiliary lipoprotein component BER92_RS15555 fd474343b65c0fdea67ffa2e8d663e2e 214 PANTHER PTHR36698 1 214 2.9E-88 T 16-09-2016 BER92_RS09835 50021a2f27ad8efdf4cafefa9e248c79 363 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 344 2.0E-107 T 16-09-2016 IPR010732 Type VI secretion, TssG-like BER92_RS09835 50021a2f27ad8efdf4cafefa9e248c79 363 PANTHER PTHR35564 97 350 8.4E-52 T 16-09-2016 BER92_RS09835 50021a2f27ad8efdf4cafefa9e248c79 363 PANTHER PTHR35564:SF2 97 350 8.4E-52 T 16-09-2016 BER92_RS09835 50021a2f27ad8efdf4cafefa9e248c79 363 PANTHER PTHR35564:SF2 3 76 8.4E-52 T 16-09-2016 BER92_RS09835 50021a2f27ad8efdf4cafefa9e248c79 363 PANTHER PTHR35564 3 76 8.4E-52 T 16-09-2016 BER92_RS09835 50021a2f27ad8efdf4cafefa9e248c79 363 Pfam PF06996 Type VI secretion, VasB, ImpH, VC_A0111 19 343 6.2E-91 T 16-09-2016 IPR010732 Type VI secretion, TssG-like BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 SUPERFAMILY SSF103088 113 229 3.66E-41 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 Gene3D G3DSA:3.30.1330.60 104 226 3.4E-42 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 209 229 2.3E-8 T 16-09-2016 BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 189 208 2.3E-8 T 16-09-2016 BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 171 188 2.3E-8 T 16-09-2016 BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 Pfam PF00691 OmpA family 125 220 8.3E-25 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 Pfam PF13488 Glycine zipper 50 95 1.4E-10 T 16-09-2016 BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 PRINTS PR01021 OMPA domain signature 156 171 4.4E-17 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 PRINTS PR01021 OMPA domain signature 171 187 4.4E-17 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 PRINTS PR01021 OMPA domain signature 126 148 4.4E-17 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 ProSitePatterns PS01068 OmpA-like domain. 158 202 - T 16-09-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 BER92_RS06720 24150f550d9308af545d2b72d1d6e9c7 241 PANTHER PTHR30128 63 232 1.2E-57 T 16-09-2016 BER92_RS08405 7461d5e3b5469350e92eaf47f30bcdf6 176 PANTHER PTHR15497 2 167 1.7E-94 T 16-09-2016 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|UniPathway: UPA00253 BER92_RS08405 7461d5e3b5469350e92eaf47f30bcdf6 176 Hamap MF_00825 3-hydroxyanthranilate 3,4-dioxygenase [nbaC]. 2 168 37.234 T 16-09-2016 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|UniPathway: UPA00253 BER92_RS08405 7461d5e3b5469350e92eaf47f30bcdf6 176 Pfam PF06052 3-hydroxyanthranilic acid dioxygenase 3 150 7.4E-77 T 16-09-2016 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|UniPathway: UPA00253 BER92_RS08405 7461d5e3b5469350e92eaf47f30bcdf6 176 TIGRFAM TIGR03037 anthran_nbaC: 3-hydroxyanthranilate 3,4-dioxygenase 6 163 3.8E-80 T 16-09-2016 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|UniPathway: UPA00253 BER92_RS08405 7461d5e3b5469350e92eaf47f30bcdf6 176 Gene3D G3DSA:2.60.120.10 4 109 4.8E-21 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS08405 7461d5e3b5469350e92eaf47f30bcdf6 176 SUPERFAMILY SSF51182 1 168 7.5E-58 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS16615 965fc904c038f7942c9d218d3d0ac3bc 172 SUPERFAMILY SSF46626 52 169 4.95E-16 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS16615 965fc904c038f7942c9d218d3d0ac3bc 172 PANTHER PTHR40942:SF1 17 172 1.1E-85 T 16-09-2016 BER92_RS16615 965fc904c038f7942c9d218d3d0ac3bc 172 PANTHER PTHR40942 17 172 1.1E-85 T 16-09-2016 BER92_RS16615 965fc904c038f7942c9d218d3d0ac3bc 172 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 90 167 4.5E-11 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS16615 965fc904c038f7942c9d218d3d0ac3bc 172 Gene3D G3DSA:1.10.760.10 90 168 1.1E-23 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS07370 7bda13d67a19b7f75bad5925ed182870 89 Pfam PF03966 Trm112p-like protein 2 68 2.4E-8 T 16-09-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 BER92_RS07370 7bda13d67a19b7f75bad5925ed182870 89 Gene3D G3DSA:2.20.25.10 40 77 3.0E-6 T 16-09-2016 BER92_RS07370 7bda13d67a19b7f75bad5925ed182870 89 SUPERFAMILY SSF158997 43 81 1.83E-7 T 16-09-2016 BER92_RS07370 7bda13d67a19b7f75bad5925ed182870 89 SUPERFAMILY SSF158997 1 15 1.83E-7 T 16-09-2016 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 SMART SM00448 9 121 1.8E-29 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 SMART SM00382 167 310 6.5E-11 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 360 369 - T 16-09-2016 IPR025944 Sigma-54 interaction domain, conserved site BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 Gene3D G3DSA:3.40.50.2300 7 128 4.6E-33 T 16-09-2016 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 SUPERFAMILY SSF52540 147 391 1.54E-72 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 PANTHER PTHR32071 10 469 1.0E-204 T 16-09-2016 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 Gene3D G3DSA:3.40.50.300 145 319 3.6E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 PANTHER PTHR32071:SF15 10 469 1.0E-204 T 16-09-2016 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 Pfam PF00072 Response regulator receiver domain 11 118 4.7E-25 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 11 470 1.3E-221 T 16-09-2016 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 Gene3D G3DSA:1.10.8.60 320 393 2.0E-22 T 16-09-2016 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 Pfam PF00158 Sigma-54 interaction domain 147 313 2.9E-68 T 16-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 Gene3D G3DSA:1.10.10.60 406 469 5.8E-14 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 171 184 - T 16-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 SUPERFAMILY SSF52172 9 191 4.7E-37 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 Pfam PF02954 Bacterial regulatory protein, Fis family 432 469 5.8E-9 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 SUPERFAMILY SSF46689 401 469 4.93E-13 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS18610 8589bcaa5c2a35fdc3a2b88dd376bb0d 476 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 233 248 - T 16-09-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER92_RS13010 9bcd680dc0172c5a12269bcb83629106 602 PANTHER PTHR33361 1 596 3.6E-276 T 16-09-2016 BER92_RS13010 9bcd680dc0172c5a12269bcb83629106 602 Pfam PF05960 Bacterial protein of unknown function (DUF885) 60 595 2.5E-106 T 16-09-2016 IPR010281 Protein of unknown function DUF885 BER92_RS13010 9bcd680dc0172c5a12269bcb83629106 602 PANTHER PTHR33361:SF5 1 596 3.6E-276 T 16-09-2016 BER92_RS07160 eb1cfaa8a5fe3f409583068e804591b0 315 PANTHER PTHR35604:SF2 2 315 5.1E-233 T 16-09-2016 BER92_RS07160 eb1cfaa8a5fe3f409583068e804591b0 315 Pfam PF05598 Transposase domain (DUF772) 50 122 2.3E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS07160 eb1cfaa8a5fe3f409583068e804591b0 315 Pfam PF01609 Transposase DDE domain 135 315 2.9E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS07160 eb1cfaa8a5fe3f409583068e804591b0 315 PANTHER PTHR35604 2 315 5.1E-233 T 16-09-2016 BER92_RS06305 aed598adeffb4204d0e0ebaff2a11080 97 PANTHER PTHR11731 2 71 4.1E-34 T 16-09-2016 BER92_RS06305 aed598adeffb4204d0e0ebaff2a11080 97 Pfam PF00326 Prolyl oligopeptidase family 28 71 1.1E-5 T 16-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BER92_RS06305 aed598adeffb4204d0e0ebaff2a11080 97 Gene3D G3DSA:3.40.50.1820 3 69 2.1E-5 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS06305 aed598adeffb4204d0e0ebaff2a11080 97 PANTHER PTHR11731:SF118 2 71 4.1E-34 T 16-09-2016 BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 Pfam PF00581 Rhodanese-like domain 171 280 2.0E-7 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 Pfam PF00581 Rhodanese-like domain 15 136 4.2E-18 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 PANTHER PTHR11364 6 290 7.9E-94 T 16-09-2016 BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 SUPERFAMILY SSF52821 5 152 3.01E-40 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 PANTHER PTHR11364:SF0 6 290 7.9E-94 T 16-09-2016 BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 Gene3D G3DSA:3.40.250.10 2 153 1.7E-47 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 Gene3D G3DSA:3.40.250.10 160 289 4.6E-34 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 SMART SM00450 165 284 1.4E-8 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 SMART SM00450 11 141 4.3E-21 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS08320 0c30bb5de6b85c3289e2702c1a58461d 290 SUPERFAMILY SSF52821 161 288 6.42E-29 T 16-09-2016 IPR001763 Rhodanese-like domain BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 Gene3D G3DSA:3.40.50.2300 53 176 7.3E-22 T 16-09-2016 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 PANTHER PTHR30146 2 353 2.5E-255 T 16-09-2016 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 5.3E-18 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 Pfam PF13377 Periplasmic binding protein-like domain 173 339 1.8E-35 T 16-09-2016 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 Gene3D G3DSA:1.10.260.40 2 52 6.0E-24 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 SUPERFAMILY SSF53822 64 342 2.52E-63 T 16-09-2016 IPR028082 Periplasmic binding protein-like I BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 SUPERFAMILY SSF47413 2 59 9.09E-17 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 Gene3D G3DSA:3.40.50.2300 177 314 1.5E-49 T 16-09-2016 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 PANTHER PTHR30146:SF35 2 353 2.5E-255 T 16-09-2016 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 15 25 5.5E-5 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 5 15 5.5E-5 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS02960 2cbef3e6afb56ac69982439dd1ced7d3 355 SMART SM00354 3 73 1.2E-24 T 16-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 BER92_RS05145 5c4ee1f308dc1f32a07f5992eef92738 155 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 155 35.006 T 16-09-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 BER92_RS05145 5c4ee1f308dc1f32a07f5992eef92738 155 PIRSF PIRSF002122 2 155 1.2E-59 T 16-09-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 BER92_RS05145 5c4ee1f308dc1f32a07f5992eef92738 155 Gene3D G3DSA:1.10.455.10 8 155 2.0E-62 T 16-09-2016 IPR023798 Ribosomal protein S7 domain BER92_RS05145 5c4ee1f308dc1f32a07f5992eef92738 155 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 3.5E-63 T 16-09-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 BER92_RS05145 5c4ee1f308dc1f32a07f5992eef92738 155 SUPERFAMILY SSF47973 3 148 9.16E-57 T 16-09-2016 IPR023798 Ribosomal protein S7 domain BER92_RS05145 5c4ee1f308dc1f32a07f5992eef92738 155 Pfam PF00177 Ribosomal protein S7p/S5e 1 148 4.6E-64 T 16-09-2016 IPR023798 Ribosomal protein S7 domain BER92_RS05145 5c4ee1f308dc1f32a07f5992eef92738 155 PANTHER PTHR11205 1 155 1.1E-85 T 16-09-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 BER92_RS05145 5c4ee1f308dc1f32a07f5992eef92738 155 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 16-09-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 BER92_RS08645 f0cb77de46a84342acdc6c6e6c1f944d 95 Pfam PF01578 Cytochrome C assembly protein 42 89 1.1E-5 T 16-09-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BER92_RS08645 f0cb77de46a84342acdc6c6e6c1f944d 95 PANTHER PTHR30071 8 92 5.2E-14 T 16-09-2016 BER92_RS08645 f0cb77de46a84342acdc6c6e6c1f944d 95 PANTHER PTHR30071:SF1 8 92 5.2E-14 T 16-09-2016 BER92_RS08645 f0cb77de46a84342acdc6c6e6c1f944d 95 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 49 66 4.1E-13 T 16-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08645 f0cb77de46a84342acdc6c6e6c1f944d 95 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 66 86 4.1E-13 T 16-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS15040 1632b771d5621157ad3f1c5c8fa98ada 555 PANTHER PTHR30443 15 549 1.5E-250 T 16-09-2016 BER92_RS15040 1632b771d5621157ad3f1c5c8fa98ada 555 Gene3D G3DSA:3.40.720.10 248 536 3.3E-14 T 16-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 BER92_RS15040 1632b771d5621157ad3f1c5c8fa98ada 555 PANTHER PTHR30443:SF0 15 549 1.5E-250 T 16-09-2016 BER92_RS15040 1632b771d5621157ad3f1c5c8fa98ada 555 Pfam PF00884 Sulfatase 247 533 1.9E-49 T 16-09-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 BER92_RS15040 1632b771d5621157ad3f1c5c8fa98ada 555 SUPERFAMILY SSF53649 244 539 7.41E-20 T 16-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 BER92_RS15040 1632b771d5621157ad3f1c5c8fa98ada 555 Pfam PF08019 Domain of unknown function (DUF1705) 68 213 7.8E-45 T 16-09-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 SUPERFAMILY SSF54373 270 360 1.23E-17 T 16-09-2016 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 49.056 T 16-09-2016 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 UniPathway: UPA00043 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 Gene3D G3DSA:3.30.9.10 270 359 3.4E-16 T 16-09-2016 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 Gene3D G3DSA:3.30.9.10 135 189 3.4E-16 T 16-09-2016 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 SUPERFAMILY SSF51905 1 54 1.42E-54 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 SUPERFAMILY SSF51905 360 417 1.42E-54 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 SUPERFAMILY SSF51905 107 270 1.42E-54 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 PANTHER PTHR13847:SF148 1 63 1.1E-239 T 16-09-2016 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 PANTHER PTHR13847:SF148 107 427 1.1E-239 T 16-09-2016 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 Gene3D G3DSA:3.50.50.60 190 269 1.8E-47 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 Gene3D G3DSA:3.50.50.60 360 423 1.8E-47 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 Gene3D G3DSA:3.50.50.60 108 122 1.8E-47 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 Gene3D G3DSA:3.50.50.60 1 55 1.8E-47 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 PANTHER PTHR13847 1 63 1.1E-239 T 16-09-2016 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 Pfam PF01266 FAD dependent oxidoreductase 3 397 4.5E-68 T 16-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BER92_RS16080 a1a7041fcba2fdfb017b39181bf2ed79 429 PANTHER PTHR13847 107 427 1.1E-239 T 16-09-2016 BER92_RS18970 eb9d3b2aa0aaa88ddae6e94043518724 321 ProSitePatterns PS00534 Ferrochelatase signature. 192 210 - T 16-09-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 BER92_RS18970 eb9d3b2aa0aaa88ddae6e94043518724 321 Hamap MF_00323 Ferrochelatase [hemH]. 8 321 33.585 T 16-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 BER92_RS18970 eb9d3b2aa0aaa88ddae6e94043518724 321 Gene3D G3DSA:3.40.50.1400 8 203 8.2E-64 T 16-09-2016 BER92_RS18970 eb9d3b2aa0aaa88ddae6e94043518724 321 PANTHER PTHR11108 8 321 1.3E-121 T 16-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 BER92_RS18970 eb9d3b2aa0aaa88ddae6e94043518724 321 Gene3D G3DSA:3.40.50.1400 204 319 8.7E-29 T 16-09-2016 BER92_RS18970 eb9d3b2aa0aaa88ddae6e94043518724 321 Pfam PF00762 Ferrochelatase 10 320 3.5E-100 T 16-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 BER92_RS18970 eb9d3b2aa0aaa88ddae6e94043518724 321 TIGRFAM TIGR00109 hemH: ferrochelatase 8 317 7.0E-86 T 16-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 BER92_RS18970 eb9d3b2aa0aaa88ddae6e94043518724 321 SUPERFAMILY SSF53800 8 320 3.66E-93 T 16-09-2016 BER92_RS12325 bcba51d448a249caf83a857cd7acbb9d 349 Pfam PF01545 Cation efflux family 42 245 5.3E-29 T 16-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BER92_RS12325 bcba51d448a249caf83a857cd7acbb9d 349 PANTHER PTHR13414 35 315 1.3E-103 T 16-09-2016 BER92_RS12325 bcba51d448a249caf83a857cd7acbb9d 349 SUPERFAMILY SSF160240 255 326 8.63E-5 T 16-09-2016 BER92_RS12325 bcba51d448a249caf83a857cd7acbb9d 349 Gene3D G3DSA:1.20.1510.10 40 248 4.2E-33 T 16-09-2016 IPR027469 Cation efflux protein transmembrane domain BER92_RS12325 bcba51d448a249caf83a857cd7acbb9d 349 SUPERFAMILY SSF161111 37 250 1.12E-39 T 16-09-2016 BER92_RS12325 bcba51d448a249caf83a857cd7acbb9d 349 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 41 331 1.1E-38 T 16-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BER92_RS07230 f77cb2203389f833ef6a0ea1a5a0df10 151 Pfam PF03840 Preprotein translocase SecG subunit 5 72 7.5E-19 T 16-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BER92_RS07230 f77cb2203389f833ef6a0ea1a5a0df10 151 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 4 73 4.1E-22 T 16-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BER92_RS07230 f77cb2203389f833ef6a0ea1a5a0df10 151 PRINTS PR01651 Protein-export SecG membrane protein signature 55 77 4.1E-35 T 16-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BER92_RS07230 f77cb2203389f833ef6a0ea1a5a0df10 151 PRINTS PR01651 Protein-export SecG membrane protein signature 4 24 4.1E-35 T 16-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BER92_RS07230 f77cb2203389f833ef6a0ea1a5a0df10 151 PRINTS PR01651 Protein-export SecG membrane protein signature 24 38 4.1E-35 T 16-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BER92_RS07230 f77cb2203389f833ef6a0ea1a5a0df10 151 PRINTS PR01651 Protein-export SecG membrane protein signature 39 55 4.1E-35 T 16-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BER92_RS07230 f77cb2203389f833ef6a0ea1a5a0df10 151 PANTHER PTHR34182 3 139 2.6E-30 T 16-09-2016 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.245 T 16-09-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 5.3E-23 T 16-09-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 Gene3D G3DSA:1.10.10.250 73 141 2.8E-29 T 16-09-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 SUPERFAMILY SSF46906 68 141 5.89E-24 T 16-09-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.9E-63 T 16-09-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 PANTHER PTHR11661 1 142 3.4E-71 T 16-09-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 3.1E-28 T 16-09-2016 IPR020784 Ribosomal protein L11, N-terminal BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 72 2.0E-14 T 16-09-2016 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 SMART SM00649 9 141 1.5E-79 T 16-09-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 16-09-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 SUPERFAMILY SSF54747 3 72 5.23E-29 T 16-09-2016 IPR020784 Ribosomal protein L11, N-terminal BER92_RS05110 398a5b006c85ab4cb72645780dfcee00 142 Gene3D G3DSA:3.30.1550.10 2 72 2.0E-36 T 16-09-2016 IPR020784 Ribosomal protein L11, N-terminal BER92_RS00635 71f7ffdd9afd90e45f157e691250d689 397 PANTHER PTHR30294 3 395 5.7E-85 T 16-09-2016 BER92_RS00635 71f7ffdd9afd90e45f157e691250d689 397 PANTHER PTHR30294:SF10 3 395 5.7E-85 T 16-09-2016 BER92_RS00635 71f7ffdd9afd90e45f157e691250d689 397 Pfam PF12679 ABC-2 family transporter protein 11 371 4.5E-20 T 16-09-2016 IPR032688 ABC-2 family transporter protein GO:0006810 BER92_RS12560 4b410ff38cf85ab7eb1cbc24a9c890d5 578 PANTHER PTHR30505 1 569 4.0E-261 T 16-09-2016 BER92_RS12560 4b410ff38cf85ab7eb1cbc24a9c890d5 578 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 230 570 6.5E-151 T 16-09-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 BER92_RS12560 4b410ff38cf85ab7eb1cbc24a9c890d5 578 Gene3D G3DSA:3.40.50.2300 5 101 9.0E-15 T 16-09-2016 BER92_RS12560 4b410ff38cf85ab7eb1cbc24a9c890d5 578 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 120 203 5.7E-37 T 16-09-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 BER92_RS12560 4b410ff38cf85ab7eb1cbc24a9c890d5 578 SUPERFAMILY SSF52794 5 99 2.62E-16 T 16-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BER92_RS12560 4b410ff38cf85ab7eb1cbc24a9c890d5 578 Gene3D G3DSA:3.40.50.2300 115 217 3.6E-40 T 16-09-2016 BER92_RS12560 4b410ff38cf85ab7eb1cbc24a9c890d5 578 SUPERFAMILY SSF52794 118 217 3.14E-35 T 16-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BER92_RS12560 4b410ff38cf85ab7eb1cbc24a9c890d5 578 PANTHER PTHR30505:SF0 1 569 4.0E-261 T 16-09-2016 BER92_RS12560 4b410ff38cf85ab7eb1cbc24a9c890d5 578 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 121 211 1.1E-16 T 16-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BER92_RS02915 4819132abf9daa9b44a153ebbc6bfb48 136 PANTHER PTHR28008 1 135 4.9E-67 T 16-09-2016 BER92_RS02915 4819132abf9daa9b44a153ebbc6bfb48 136 PANTHER PTHR28008:SF2 1 135 4.9E-67 T 16-09-2016 BER92_RS02915 4819132abf9daa9b44a153ebbc6bfb48 136 Pfam PF04892 VanZ like family 50 119 2.9E-6 T 16-09-2016 IPR006976 VanZ-like BER92_RS09185 ec0691f84687bd735e2e6aa518f88328 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS09185 ec0691f84687bd735e2e6aa518f88328 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS09185 ec0691f84687bd735e2e6aa518f88328 455 Pfam PF01609 Transposase DDE domain 284 421 3.9E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09185 ec0691f84687bd735e2e6aa518f88328 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS04660 b6271a2dff388a74e53eb3bad5ae8a7f 447 Pfam PF05598 Transposase domain (DUF772) 59 133 2.9E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS04660 b6271a2dff388a74e53eb3bad5ae8a7f 447 PANTHER PTHR33803:SF1 1 361 4.2E-255 T 16-09-2016 BER92_RS04660 b6271a2dff388a74e53eb3bad5ae8a7f 447 PANTHER PTHR33803 1 361 4.2E-255 T 16-09-2016 BER92_RS07725 2d8ac89f95c53666194e552a687f4c56 346 SUPERFAMILY SSF52540 2 325 4.11E-44 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07725 2d8ac89f95c53666194e552a687f4c56 346 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 28 337 4.8E-134 T 16-09-2016 IPR014155 Type IV secretion system protein VirB11 GO:0005737|GO:0006810|GO:0009405 BER92_RS07725 2d8ac89f95c53666194e552a687f4c56 346 Gene3D G3DSA:3.30.450.90 25 119 4.0E-26 T 16-09-2016 BER92_RS07725 2d8ac89f95c53666194e552a687f4c56 346 Gene3D G3DSA:3.40.50.300 160 326 7.1E-37 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07725 2d8ac89f95c53666194e552a687f4c56 346 Pfam PF00437 Type II/IV secretion system protein 28 325 2.7E-64 T 16-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 BER92_RS07725 2d8ac89f95c53666194e552a687f4c56 346 PANTHER PTHR30258 25 138 3.2E-60 T 16-09-2016 BER92_RS07725 2d8ac89f95c53666194e552a687f4c56 346 PANTHER PTHR30258 161 346 3.2E-60 T 16-09-2016 BER92_RS18885 cc10fcdea13f9d3133cbe6d14cf8a03b 358 Gene3D G3DSA:3.20.20.80 35 341 3.3E-89 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS18885 cc10fcdea13f9d3133cbe6d14cf8a03b 358 SUPERFAMILY SSF51445 34 338 7.16E-75 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS18885 cc10fcdea13f9d3133cbe6d14cf8a03b 358 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 60 314 2.2E-48 T 16-09-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BER92_RS18885 cc10fcdea13f9d3133cbe6d14cf8a03b 358 PANTHER PTHR34142 14 318 1.6E-83 T 16-09-2016 BER92_RS05615 3c26f2609007e7b68ec72ebe2b186e7e 259 Gene3D G3DSA:3.40.50.1240 18 234 4.4E-45 T 16-09-2016 IPR029033 Histidine phosphatase superfamily BER92_RS05615 3c26f2609007e7b68ec72ebe2b186e7e 259 SUPERFAMILY SSF53254 17 234 1.31E-43 T 16-09-2016 IPR029033 Histidine phosphatase superfamily BER92_RS05615 3c26f2609007e7b68ec72ebe2b186e7e 259 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 20 234 1.4E-34 T 16-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 BER92_RS05615 3c26f2609007e7b68ec72ebe2b186e7e 259 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 22 31 - T 16-09-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 BER92_RS05615 3c26f2609007e7b68ec72ebe2b186e7e 259 PANTHER PTHR23029:SF1 11 221 2.7E-44 T 16-09-2016 BER92_RS05615 3c26f2609007e7b68ec72ebe2b186e7e 259 PANTHER PTHR23029 11 221 2.7E-44 T 16-09-2016 BER92_RS05615 3c26f2609007e7b68ec72ebe2b186e7e 259 SMART SM00855 19 193 9.2E-19 T 16-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 PANTHER PTHR23501:SF51 18 523 4.1E-151 T 16-09-2016 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 Gene3D G3DSA:1.20.1250.20 24 207 1.2E-26 T 16-09-2016 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 PANTHER PTHR23501 18 523 4.1E-151 T 16-09-2016 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 Pfam PF07690 Major Facilitator Superfamily 33 425 2.8E-48 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 28 513 1.1E-113 T 16-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 SUPERFAMILY SSF103473 493 524 2.49E-63 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 SUPERFAMILY SSF103473 20 205 2.49E-63 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 SUPERFAMILY SSF103473 264 435 2.49E-63 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 Gene3D G3DSA:1.20.1250.20 280 437 3.6E-17 T 16-09-2016 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 Gene3D G3DSA:1.20.1250.20 494 523 3.6E-17 T 16-09-2016 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 PRINTS PR01036 Tetracycline resistance protein TetB signature 151 175 9.5E-5 T 16-09-2016 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 PRINTS PR01036 Tetracycline resistance protein TetB signature 30 54 9.5E-5 T 16-09-2016 BER92_RS07535 f47dae14d1a83148c892d63b039debd0 528 PRINTS PR01036 Tetracycline resistance protein TetB signature 121 141 9.5E-5 T 16-09-2016 BER92_RS03450 2e167121e5712990b172c3461ab8f084 219 SUPERFAMILY SSF56112 15 149 3.88E-15 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS03450 2e167121e5712990b172c3461ab8f084 219 Gene3D G3DSA:1.10.510.10 97 150 6.2E-9 T 16-09-2016 BER92_RS13520 5d739bfdab38a9919859795ce64e276e 109 Pfam PF00355 Rieske [2Fe-2S] domain 4 95 1.9E-15 T 16-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BER92_RS13520 5d739bfdab38a9919859795ce64e276e 109 SUPERFAMILY SSF50022 4 106 3.4E-25 T 16-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BER92_RS13520 5d739bfdab38a9919859795ce64e276e 109 Gene3D G3DSA:2.102.10.10 2 106 9.6E-29 T 16-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BER92_RS13520 5d739bfdab38a9919859795ce64e276e 109 PANTHER PTHR21496 5 109 1.5E-19 T 16-09-2016 BER92_RS01675 9aa5d9b2d6abf86ae67fdedba5e87f9f 343 Gene3D G3DSA:3.30.1330.40 232 333 1.2E-5 T 16-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like BER92_RS01675 9aa5d9b2d6abf86ae67fdedba5e87f9f 343 SUPERFAMILY SSF55298 232 332 2.86E-7 T 16-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like BER92_RS08750 2fc3d8df10af0566895de4fd01a0bac9 118 PANTHER PTHR37485 5 109 1.4E-49 T 16-09-2016 BER92_RS08750 2fc3d8df10af0566895de4fd01a0bac9 118 Pfam PF04977 Septum formation initiator 14 92 1.2E-29 T 16-09-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 BER92_RS08750 2fc3d8df10af0566895de4fd01a0bac9 118 PANTHER PTHR37485:SF1 5 109 1.4E-49 T 16-09-2016 BER92_RS08750 2fc3d8df10af0566895de4fd01a0bac9 118 Hamap MF_00599 Cell division protein FtsB [ftsB]. 2 93 35.116 T 16-09-2016 IPR023081 Cell division protein FtsB BER92_RS12870 fc8e4bdfb818fc07d81889e28725bec3 276 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 13 264 1.7E-78 T 16-09-2016 IPR006304 Type III secretion protein SpaR/YscT GO:0006810|GO:0016021 BER92_RS12870 fc8e4bdfb818fc07d81889e28725bec3 276 Pfam PF01311 Bacterial export proteins, family 1 20 252 2.4E-49 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS12870 fc8e4bdfb818fc07d81889e28725bec3 276 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 28 49 1.7E-24 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS12870 fc8e4bdfb818fc07d81889e28725bec3 276 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 189 211 1.7E-24 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS12870 fc8e4bdfb818fc07d81889e28725bec3 276 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 87 106 1.7E-24 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS12870 fc8e4bdfb818fc07d81889e28725bec3 276 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 211 230 1.7E-24 T 16-09-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BER92_RS12870 fc8e4bdfb818fc07d81889e28725bec3 276 PANTHER PTHR30065:SF2 8 272 1.0E-122 T 16-09-2016 BER92_RS12870 fc8e4bdfb818fc07d81889e28725bec3 276 PANTHER PTHR30065 8 272 1.0E-122 T 16-09-2016 BER92_RS11195 886cb331e1385af9a3c2d2a2d11b88a3 101 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 5 100 3.1E-27 T 16-09-2016 IPR017924 RNA-binding protein YhbY GO:0003723 BER92_RS11195 886cb331e1385af9a3c2d2a2d11b88a3 101 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 11 100 3.0E-43 T 16-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 BER92_RS11195 886cb331e1385af9a3c2d2a2d11b88a3 101 PANTHER PTHR31846 5 97 1.1E-33 T 16-09-2016 BER92_RS11195 886cb331e1385af9a3c2d2a2d11b88a3 101 Pfam PF01985 CRS1 / YhbY (CRM) domain 5 88 6.9E-22 T 16-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 BER92_RS11195 886cb331e1385af9a3c2d2a2d11b88a3 101 SMART SM01103 5 88 2.4E-38 T 16-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 BER92_RS11195 886cb331e1385af9a3c2d2a2d11b88a3 101 SUPERFAMILY SSF75471 4 98 3.53E-29 T 16-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 BER92_RS11195 886cb331e1385af9a3c2d2a2d11b88a3 101 Gene3D G3DSA:3.30.110.60 5 98 1.6E-30 T 16-09-2016 IPR001890 RNA-binding, CRM domain GO:0003723 BER92_RS13975 c0f62a6dae0eeb85e8ca184586e1371b 117 Pfam PF07238 PilZ domain 15 100 2.9E-9 T 16-09-2016 IPR009875 PilZ domain GO:0035438 BER92_RS00940 6123d530e25d5be8dc5268e44756c819 173 Gene3D G3DSA:3.40.630.30 8 166 2.2E-35 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS00940 6123d530e25d5be8dc5268e44756c819 173 PANTHER PTHR23091 1 170 1.6E-79 T 16-09-2016 BER92_RS00940 6123d530e25d5be8dc5268e44756c819 173 SUPERFAMILY SSF55729 9 164 1.16E-30 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS00940 6123d530e25d5be8dc5268e44756c819 173 Pfam PF13420 Acetyltransferase (GNAT) domain 54 156 3.7E-17 T 16-09-2016 BER92_RS00940 6123d530e25d5be8dc5268e44756c819 173 PANTHER PTHR23091:SF187 1 170 1.6E-79 T 16-09-2016 BER92_RS01780 5116b67dfee0855eeb5a12a46febf66d 280 Gene3D G3DSA:3.40.50.720 75 208 3.7E-35 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01780 5116b67dfee0855eeb5a12a46febf66d 280 Pfam PF02254 TrkA-N domain 81 190 1.6E-26 T 16-09-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BER92_RS01780 5116b67dfee0855eeb5a12a46febf66d 280 SUPERFAMILY SSF51735 79 213 5.04E-31 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01780 5116b67dfee0855eeb5a12a46febf66d 280 PANTHER PTHR16254:SF6 1 234 6.2E-84 T 16-09-2016 BER92_RS01780 5116b67dfee0855eeb5a12a46febf66d 280 PANTHER PTHR16254 1 234 6.2E-84 T 16-09-2016 BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 SUPERFAMILY SSF51445 22 371 5.35E-79 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 SMART SM00637 388 468 8.6E-9 T 16-09-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 PANTHER PTHR31263:SF0 33 361 3.0E-72 T 16-09-2016 BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 35 342 1.2E-54 T 16-09-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 174 183 - T 16-09-2016 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 PANTHER PTHR31263 33 361 3.0E-72 T 16-09-2016 BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 Gene3D G3DSA:2.60.40.290 388 467 1.2E-18 T 16-09-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 Gene3D G3DSA:3.20.20.80 22 365 2.0E-105 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 Pfam PF00553 Cellulose binding domain 391 466 3.6E-15 T 16-09-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 BER92_RS02580 788b2fa79075e90d350702a55c7d7574 468 SUPERFAMILY SSF49384 383 467 1.26E-18 T 16-09-2016 IPR008965 Carbohydrate-binding domain GO:0030246 BER92_RS03325 3ff0449d6a956cd285e96ffc05d922d7 372 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 35 299 2.9E-71 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS03325 3ff0449d6a956cd285e96ffc05d922d7 372 PANTHER PTHR10314 1 329 6.3E-116 T 16-09-2016 BER92_RS03325 3ff0449d6a956cd285e96ffc05d922d7 372 PANTHER PTHR10314:SF17 1 329 6.3E-116 T 16-09-2016 BER92_RS03325 3ff0449d6a956cd285e96ffc05d922d7 372 Gene3D G3DSA:3.40.50.1100 82 318 1.3E-55 T 16-09-2016 BER92_RS03325 3ff0449d6a956cd285e96ffc05d922d7 372 SUPERFAMILY SSF53686 20 313 1.27E-77 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS11205 459230108b5430db154be520375477b5 268 PANTHER PTHR30007 7 258 8.2E-133 T 16-09-2016 BER92_RS11205 459230108b5430db154be520375477b5 268 Pfam PF01609 Transposase DDE domain 100 251 1.8E-20 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11205 459230108b5430db154be520375477b5 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS11205 459230108b5430db154be520375477b5 268 PANTHER PTHR30007:SF17 7 258 8.2E-133 T 16-09-2016 BER92_RS12925 15d623d03a9d9996e49f79efd6dc9f68 317 Gene3D G3DSA:2.30.330.10 231 310 5.0E-12 T 16-09-2016 BER92_RS12925 15d623d03a9d9996e49f79efd6dc9f68 317 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 36 309 2.3E-45 T 16-09-2016 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 BER92_RS12925 15d623d03a9d9996e49f79efd6dc9f68 317 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 239 309 1.2E-10 T 16-09-2016 IPR001543 Surface presentation of antigen (SpoA) BER92_RS12925 15d623d03a9d9996e49f79efd6dc9f68 317 SUPERFAMILY SSF101801 237 312 4.84E-12 T 16-09-2016 IPR001543 Surface presentation of antigen (SpoA) BER92_RS10155 5c5b6904a0921698533e74c02795fa00 249 SUPERFAMILY SSF55729 7 233 1.38E-85 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS10155 5c5b6904a0921698533e74c02795fa00 249 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 249 94.199 T 16-09-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 BER92_RS10155 5c5b6904a0921698533e74c02795fa00 249 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 38 219 2.7E-54 T 16-09-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 BER92_RS10155 5c5b6904a0921698533e74c02795fa00 249 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 39 209 7.2E-67 T 16-09-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 BER92_RS10155 5c5b6904a0921698533e74c02795fa00 249 PANTHER PTHR30098:SF2 17 239 1.4E-75 T 16-09-2016 BER92_RS10155 5c5b6904a0921698533e74c02795fa00 249 PANTHER PTHR30098 17 239 1.4E-75 T 16-09-2016 BER92_RS05620 8693fda93d562db1b1f008c75560fb8d 289 Gene3D G3DSA:3.40.1190.20 12 286 7.4E-65 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS05620 8693fda93d562db1b1f008c75560fb8d 289 PANTHER PTHR12592:SF0 1 289 3.4E-54 T 16-09-2016 BER92_RS05620 8693fda93d562db1b1f008c75560fb8d 289 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 9 288 19.589 T 16-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 BER92_RS05620 8693fda93d562db1b1f008c75560fb8d 289 Pfam PF01256 Carbohydrate kinase 32 275 6.4E-37 T 16-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 BER92_RS05620 8693fda93d562db1b1f008c75560fb8d 289 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 12 280 2.5E-47 T 16-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 BER92_RS05620 8693fda93d562db1b1f008c75560fb8d 289 SUPERFAMILY SSF53613 8 282 2.18E-55 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS05620 8693fda93d562db1b1f008c75560fb8d 289 PANTHER PTHR12592 1 289 3.4E-54 T 16-09-2016 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 PANTHER PTHR22769 1 153 2.0E-62 T 16-09-2016 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 Pfam PF00293 NUDIX domain 12 134 8.4E-17 T 16-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 PANTHER PTHR22769:SF39 1 153 2.0E-62 T 16-09-2016 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 Gene3D G3DSA:3.90.79.10 6 153 4.2E-32 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 16-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 SUPERFAMILY SSF55811 3 149 2.44E-25 T 16-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 PRINTS PR01402 Mutator MutX protein signature 27 42 3.7E-9 T 16-09-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 PRINTS PR01402 Mutator MutX protein signature 105 125 3.7E-9 T 16-09-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 PRINTS PR01402 Mutator MutX protein signature 9 27 3.7E-9 T 16-09-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 PRINTS PR01402 Mutator MutX protein signature 125 142 3.7E-9 T 16-09-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BER92_RS11705 0056e725176b5fd636eaab6d92ad6e64 162 PRINTS PR01402 Mutator MutX protein signature 74 100 3.7E-9 T 16-09-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 Gene3D G3DSA:3.40.1410.10 84 250 5.7E-39 T 16-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 SMART SM00866 108 244 3.7E-25 T 16-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 Pfam PF07702 UTRA domain 110 243 3.7E-31 T 16-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 Gene3D G3DSA:1.10.10.10 18 83 1.3E-28 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 62 8.1E-10 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 78 8.1E-10 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 SUPERFAMILY SSF46785 18 90 8.67E-23 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 PANTHER PTHR11751 23 91 4.6E-26 T 16-09-2016 BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 PANTHER PTHR11751 137 160 4.6E-26 T 16-09-2016 BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 SUPERFAMILY SSF64288 76 251 1.41E-41 T 16-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 88 1.2E-20 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS02950 fe6ac4e2e2f1fadf34d1989eaf45b71f 251 SMART SM00345 29 88 3.0E-21 T 16-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BER92_RS14050 20a409af94bcaaa4336848dce5c5f625 317 SMART SM00382 46 187 0.0021 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS14050 20a409af94bcaaa4336848dce5c5f625 317 SUPERFAMILY SSF52540 23 293 1.22E-37 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14050 20a409af94bcaaa4336848dce5c5f625 317 PIRSF PIRSF002849 1 317 2.7E-120 T 16-09-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted BER92_RS14050 20a409af94bcaaa4336848dce5c5f625 317 PANTHER PTHR11603:SF155 14 299 2.9E-138 T 16-09-2016 BER92_RS14050 20a409af94bcaaa4336848dce5c5f625 317 PANTHER PTHR11603 14 299 2.9E-138 T 16-09-2016 BER92_RS14050 20a409af94bcaaa4336848dce5c5f625 317 Gene3D G3DSA:3.40.50.300 35 195 4.9E-38 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14050 20a409af94bcaaa4336848dce5c5f625 317 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 49 179 4.2E-63 T 16-09-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 BER92_RS14050 20a409af94bcaaa4336848dce5c5f625 317 Gene3D G3DSA:1.10.8.300 211 301 7.4E-26 T 16-09-2016 BER92_RS10225 2caf5ce0b29726603437d6d063215106 110 SUPERFAMILY SSF140566 5 81 1.57E-7 T 16-09-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 BER92_RS10225 2caf5ce0b29726603437d6d063215106 110 Gene3D G3DSA:1.20.58.300 6 45 5.8E-5 T 16-09-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 Gene3D G3DSA:3.30.70.360 181 277 4.9E-11 T 16-09-2016 IPR011650 Peptidase M20, dimerisation domain BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 Pfam PF01546 Peptidase family M20/M25/M40 73 367 5.9E-19 T 16-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 SUPERFAMILY SSF53187 293 367 2.67E-33 T 16-09-2016 BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 SUPERFAMILY SSF53187 9 171 2.67E-33 T 16-09-2016 BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 Gene3D G3DSA:3.40.630.10 13 180 7.1E-43 T 16-09-2016 BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 Gene3D G3DSA:3.40.630.10 312 368 7.1E-43 T 16-09-2016 BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 SUPERFAMILY SSF55031 171 277 1.92E-10 T 16-09-2016 IPR011650 Peptidase M20, dimerisation domain BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 PANTHER PTHR11014 14 368 1.6E-143 T 16-09-2016 BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 PANTHER PTHR11014:SF75 14 368 1.6E-143 T 16-09-2016 BER92_RS11880 50e2b2e86c5de4b6d95ff2fb2cbdb19b 371 Pfam PF07687 Peptidase dimerisation domain 169 276 3.7E-13 T 16-09-2016 IPR011650 Peptidase M20, dimerisation domain BER92_RS11960 c5b03754a8c7a19de58410b2715f91a0 544 Pfam PF00295 Glycosyl hydrolases family 28 98 434 3.7E-42 T 16-09-2016 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 BER92_RS11960 c5b03754a8c7a19de58410b2715f91a0 544 Gene3D G3DSA:2.160.20.10 67 471 8.2E-84 T 16-09-2016 IPR012334 Pectin lyase fold BER92_RS11960 c5b03754a8c7a19de58410b2715f91a0 544 SUPERFAMILY SSF51126 281 474 7.02E-53 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS11960 c5b03754a8c7a19de58410b2715f91a0 544 SUPERFAMILY SSF51126 73 251 7.02E-53 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS11960 c5b03754a8c7a19de58410b2715f91a0 544 PANTHER PTHR31339:SF0 282 441 4.2E-83 T 16-09-2016 BER92_RS11960 c5b03754a8c7a19de58410b2715f91a0 544 PANTHER PTHR31339 282 441 4.2E-83 T 16-09-2016 BER92_RS11960 c5b03754a8c7a19de58410b2715f91a0 544 PANTHER PTHR31339 74 254 4.2E-83 T 16-09-2016 BER92_RS11960 c5b03754a8c7a19de58410b2715f91a0 544 PANTHER PTHR31339:SF0 74 254 4.2E-83 T 16-09-2016 BER92_RS12960 84cd8e7a08f2fd7f4a526b3519d21e57 156 SUPERFAMILY SSF69635 50 133 2.67E-6 T 16-09-2016 BER92_RS12960 84cd8e7a08f2fd7f4a526b3519d21e57 156 Pfam PF05932 Tir chaperone protein (CesT) family 51 131 1.3E-5 T 16-09-2016 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 BER92_RS18265 db9558f500feeef3a46206509dfc56cc 387 PANTHER PTHR35457 292 385 2.4E-67 T 16-09-2016 BER92_RS18265 db9558f500feeef3a46206509dfc56cc 387 PANTHER PTHR35457 1 107 2.4E-67 T 16-09-2016 BER92_RS18265 db9558f500feeef3a46206509dfc56cc 387 PANTHER PTHR35457:SF1 154 262 2.4E-67 T 16-09-2016 BER92_RS18265 db9558f500feeef3a46206509dfc56cc 387 Pfam PF02628 Cytochrome oxidase assembly protein 134 377 3.4E-45 T 16-09-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 BER92_RS18265 db9558f500feeef3a46206509dfc56cc 387 PANTHER PTHR35457:SF1 292 385 2.4E-67 T 16-09-2016 BER92_RS18265 db9558f500feeef3a46206509dfc56cc 387 PANTHER PTHR35457:SF1 1 107 2.4E-67 T 16-09-2016 BER92_RS18265 db9558f500feeef3a46206509dfc56cc 387 PANTHER PTHR35457 154 262 2.4E-67 T 16-09-2016 BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 Gene3D G3DSA:1.10.10.10 1 55 7.5E-21 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 PANTHER PTHR30154 1 139 1.4E-41 T 16-09-2016 BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 SUPERFAMILY SSF46785 5 57 2.36E-12 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 Pfam PF01037 Lrp/AsnC ligand binding domain 69 139 4.6E-13 T 16-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 SUPERFAMILY SSF54909 65 142 5.09E-14 T 16-09-2016 IPR011008 Dimeric alpha-beta barrel BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 9.6E-14 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 9.6E-14 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 9.6E-14 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 16-09-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 Gene3D G3DSA:3.30.70.920 67 139 1.0E-15 T 16-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 PANTHER PTHR30154:SF12 1 139 1.4E-41 T 16-09-2016 BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 SMART SM00344 7 109 1.1E-21 T 16-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BER92_RS12595 c646c52a4eb089135f7ca418e743076a 143 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 49 1.1E-14 T 16-09-2016 BER92_RS07705 3bd5cdc199681c76c04fb9886d12fcc8 136 Pfam PF10671 Toxin co-regulated pilus biosynthesis protein Q 51 122 2.7E-7 T 16-09-2016 IPR018927 Toxin co-regulated pilus biosynthesis protein Q, C-terminal BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 SUPERFAMILY SSF55174 333 400 6.93E-16 T 16-09-2016 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 16-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 Pfam PF00579 tRNA synthetases class I (W and Y) 32 312 2.1E-70 T 16-09-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 Gene3D G3DSA:1.10.240.10 228 327 1.6E-27 T 16-09-2016 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 Gene3D G3DSA:3.40.50.620 10 227 7.8E-84 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 PANTHER PTHR11766:SF1 4 402 1.1E-219 T 16-09-2016 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 Gene3D G3DSA:3.10.290.10 333 400 3.2E-21 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 SMART SM00363 339 401 1.0E-4 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 8 399 5.4E-111 T 16-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 400 45.931 T 16-09-2016 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 1.6E-25 T 16-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 1.6E-25 T 16-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 1.6E-25 T 16-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 1.6E-25 T 16-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 PANTHER PTHR11766 4 402 1.1E-219 T 16-09-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 BER92_RS18320 0cf5390a55df85dc1cb586926b2a3970 403 SUPERFAMILY SSF52374 4 314 7.88E-89 T 16-09-2016 BER92_RS13430 11855ad579675e5eece24f76d747fc0c 185 Gene3D G3DSA:1.10.340.30 4 122 1.9E-44 T 16-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 BER92_RS13430 11855ad579675e5eece24f76d747fc0c 185 PANTHER PTHR30037:SF4 1 179 3.7E-83 T 16-09-2016 BER92_RS13430 11855ad579675e5eece24f76d747fc0c 185 PANTHER PTHR30037 1 179 3.7E-83 T 16-09-2016 BER92_RS13430 11855ad579675e5eece24f76d747fc0c 185 SUPERFAMILY SSF48150 4 166 3.73E-51 T 16-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 BER92_RS13430 11855ad579675e5eece24f76d747fc0c 185 Pfam PF03352 Methyladenine glycosylase 11 119 2.0E-39 T 16-09-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 BER92_RS04640 ebbdc9c773acd240a2747798379e618e 827 Pfam PF02687 FtsX-like permease family 706 820 5.5E-15 T 16-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 BER92_RS04640 ebbdc9c773acd240a2747798379e618e 827 Pfam PF02687 FtsX-like permease family 259 375 9.5E-14 T 16-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 BER92_RS04640 ebbdc9c773acd240a2747798379e618e 827 PANTHER PTHR30287 2 827 1.5E-146 T 16-09-2016 BER92_RS09955 21b56ad817284e0884142d8d38a72b7d 105 Pfam PF01527 Transposase 11 77 4.6E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS09955 21b56ad817284e0884142d8d38a72b7d 105 Gene3D G3DSA:1.10.10.60 14 91 1.5E-18 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09955 21b56ad817284e0884142d8d38a72b7d 105 SUPERFAMILY SSF46689 8 93 5.73E-19 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09955 21b56ad817284e0884142d8d38a72b7d 105 PANTHER PTHR33215 7 103 3.1E-21 T 16-09-2016 BER92_RS09955 21b56ad817284e0884142d8d38a72b7d 105 PANTHER PTHR33215:SF1 7 103 3.1E-21 T 16-09-2016 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 Gene3D G3DSA:3.30.830.10 302 456 4.2E-14 T 16-09-2016 IPR011237 Peptidase M16 domain GO:0046872 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 Gene3D G3DSA:3.30.830.10 751 936 3.7E-22 T 16-09-2016 IPR011237 Peptidase M16 domain GO:0046872 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 PANTHER PTHR11851:SF136 17 897 0.0 T 16-09-2016 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 SUPERFAMILY SSF63411 749 940 1.53E-30 T 16-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 Gene3D G3DSA:3.30.830.10 45 265 2.8E-48 T 16-09-2016 IPR011237 Peptidase M16 domain GO:0046872 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 SUPERFAMILY SSF63411 274 464 2.5E-27 T 16-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 Gene3D G3DSA:3.30.830.10 521 738 1.5E-41 T 16-09-2016 IPR011237 Peptidase M16 domain GO:0046872 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 SUPERFAMILY SSF63411 513 739 1.92E-43 T 16-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 PANTHER PTHR11851 17 897 0.0 T 16-09-2016 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 Pfam PF00675 Insulinase (Peptidase family M16) 57 193 1.7E-14 T 16-09-2016 IPR011765 Peptidase M16, N-terminal BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 Pfam PF00675 Insulinase (Peptidase family M16) 533 659 1.2E-5 T 16-09-2016 IPR011765 Peptidase M16, N-terminal BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 SUPERFAMILY SSF63411 42 263 2.27E-51 T 16-09-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 Pfam PF05193 Peptidase M16 inactive domain 688 868 1.2E-28 T 16-09-2016 IPR007863 Peptidase M16, C-terminal BER92_RS02560 82b077c8ffe8b091b9c4063a11b29a8e 963 Pfam PF05193 Peptidase M16 inactive domain 214 387 1.1E-27 T 16-09-2016 IPR007863 Peptidase M16, C-terminal BER92_RS04990 9027c421f05c20702c4ff13324950139 198 Gene3D G3DSA:3.40.50.360 1 195 1.0E-65 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS04990 9027c421f05c20702c4ff13324950139 198 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 197 31.37 T 16-09-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 BER92_RS04990 9027c421f05c20702c4ff13324950139 198 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 195 3.5E-48 T 16-09-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 BER92_RS04990 9027c421f05c20702c4ff13324950139 198 SUPERFAMILY SSF52218 1 195 5.63E-57 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS04990 9027c421f05c20702c4ff13324950139 198 PANTHER PTHR30546 1 196 3.1E-82 T 16-09-2016 BER92_RS04990 9027c421f05c20702c4ff13324950139 198 Pfam PF03358 NADPH-dependent FMN reductase 52 129 4.5E-9 T 16-09-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 Gene3D G3DSA:2.60.40.1180 599 701 1.0E-22 T 16-09-2016 IPR013780 Glycosyl hydrolase, all-beta BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 15 701 0.0 T 16-09-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 Gene3D G3DSA:3.20.20.80 165 586 1.6E-118 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 SUPERFAMILY SSF51011 598 701 2.88E-19 T 16-09-2016 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 Gene3D G3DSA:2.60.40.10 15 164 2.3E-55 T 16-09-2016 IPR013783 Immunoglobulin-like fold BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 PANTHER PTHR10357:SF74 609 718 0.0 T 16-09-2016 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 PANTHER PTHR10357:SF74 8 589 0.0 T 16-09-2016 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 SUPERFAMILY SSF51445 508 585 2.07E-131 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 SUPERFAMILY SSF51445 147 479 2.07E-131 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 Pfam PF00128 Alpha amylase, catalytic domain 200 308 3.1E-7 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 19 106 5.9E-20 T 16-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 SMART SM00642 190 578 9.5E-6 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 PANTHER PTHR10357 609 718 0.0 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 PANTHER PTHR10357 8 589 0.0 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS17575 7016e798610460da522e5d34c3b22e7b 720 SUPERFAMILY SSF81296 15 160 5.88E-48 T 16-09-2016 IPR014756 Immunoglobulin E-set BER92_RS05360 83f65b04354817bcc74de8e6667d702d 252 PANTHER PTHR23417:SF14 23 243 4.1E-67 T 16-09-2016 BER92_RS05360 83f65b04354817bcc74de8e6667d702d 252 SUPERFAMILY SSF53335 23 240 1.21E-36 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS05360 83f65b04354817bcc74de8e6667d702d 252 Pfam PF02390 Putative methyltransferase 70 239 7.0E-48 T 16-09-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 BER92_RS05360 83f65b04354817bcc74de8e6667d702d 252 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 30 244 27.898 T 16-09-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 BER92_RS05360 83f65b04354817bcc74de8e6667d702d 252 Gene3D G3DSA:3.40.50.150 65 198 1.2E-15 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS05360 83f65b04354817bcc74de8e6667d702d 252 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 55 241 1.1E-45 T 16-09-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 BER92_RS05360 83f65b04354817bcc74de8e6667d702d 252 PANTHER PTHR23417 23 243 4.1E-67 T 16-09-2016 BER92_RS04840 f2408227fdb88730d8eba980db6629cb 213 PANTHER PTHR11260:SF144 16 177 2.8E-35 T 16-09-2016 BER92_RS04840 f2408227fdb88730d8eba980db6629cb 213 Gene3D G3DSA:3.40.30.10 16 98 4.3E-13 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04840 f2408227fdb88730d8eba980db6629cb 213 SUPERFAMILY SSF47616 87 202 1.18E-10 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS04840 f2408227fdb88730d8eba980db6629cb 213 SUPERFAMILY SSF52833 10 83 8.73E-15 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04840 f2408227fdb88730d8eba980db6629cb 213 Gene3D G3DSA:1.20.1050.10 99 208 1.4E-33 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS04840 f2408227fdb88730d8eba980db6629cb 213 PANTHER PTHR11260 16 177 2.8E-35 T 16-09-2016 BER92_RS04840 f2408227fdb88730d8eba980db6629cb 213 Pfam PF13409 Glutathione S-transferase, N-terminal domain 16 78 1.3E-9 T 16-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 SUPERFAMILY SSF52540 1 240 1.77E-82 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 Pfam PF09383 NIL domain 262 331 7.5E-19 T 16-09-2016 IPR018449 NIL domain BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 SMART SM00930 260 333 5.8E-24 T 16-09-2016 IPR018449 NIL domain BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 SMART SM00382 30 217 3.0E-19 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 Gene3D G3DSA:3.30.70.260 236 334 9.9E-24 T 16-09-2016 BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 SUPERFAMILY SSF55021 260 333 4.46E-16 T 16-09-2016 BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 Gene3D G3DSA:3.40.50.300 1 235 1.7E-85 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 PANTHER PTHR24220 3 247 1.0E-165 T 16-09-2016 BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 PANTHER PTHR24220 276 307 1.0E-165 T 16-09-2016 BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 Pfam PF00005 ABC transporter 21 169 6.4E-34 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 PANTHER PTHR24220:SF455 3 247 1.0E-165 T 16-09-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 BER92_RS15980 bfdf296b5f945bc9daf7846fdb017545 335 PANTHER PTHR24220:SF455 276 307 1.0E-165 T 16-09-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 2 324 5.7E-102 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 Pfam PF14841 FliG middle domain 111 184 1.4E-26 T 16-09-2016 IPR032779 Flagellar motor switch protein FliG, middle domain BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PANTHER PTHR30534 1 329 1.7E-114 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 Gene3D G3DSA:1.10.220.30 191 328 8.3E-40 T 16-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 SUPERFAMILY SSF48029 2 113 1.54E-24 T 16-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 Gene3D G3DSA:1.10.220.30 3 67 2.3E-18 T 16-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 Gene3D G3DSA:1.10.220.30 100 187 4.2E-31 T 16-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PANTHER PTHR30534:SF0 1 329 1.7E-114 T 16-09-2016 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PIRSF PIRSF003161 1 329 1.2E-118 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 Pfam PF01706 FliG C-terminal domain 215 320 3.6E-39 T 16-09-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 SUPERFAMILY SSF48029 110 321 3.01E-67 T 16-09-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 1 16 5.9E-65 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 110 133 5.9E-65 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 268 294 5.9E-65 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 30 56 5.9E-65 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 244 264 5.9E-65 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 191 216 5.9E-65 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 222 242 5.9E-65 T 16-09-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BER92_RS10370 db860f1f3fec1fce54c6b78d105a79be 329 Pfam PF14842 FliG N-terminal domain 1 101 2.1E-32 T 16-09-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain BER92_RS06550 f4faf019aa67fd25f16bb551d8202980 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 289 5.0E-15 T 16-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BER92_RS06550 f4faf019aa67fd25f16bb551d8202980 397 PANTHER PTHR30386:SF6 1 375 7.6E-180 T 16-09-2016 BER92_RS06550 f4faf019aa67fd25f16bb551d8202980 397 PANTHER PTHR30386 1 375 7.6E-180 T 16-09-2016 BER92_RS06550 f4faf019aa67fd25f16bb551d8202980 397 SUPERFAMILY SSF111369 59 113 5.36E-8 T 16-09-2016 BER92_RS06550 f4faf019aa67fd25f16bb551d8202980 397 SUPERFAMILY SSF111369 163 267 1.24E-10 T 16-09-2016 BER92_RS06550 f4faf019aa67fd25f16bb551d8202980 397 Pfam PF00529 HlyD membrane-fusion protein of T1SS 62 344 8.4E-9 T 16-09-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 BER92_RS06550 f4faf019aa67fd25f16bb551d8202980 397 Gene3D G3DSA:2.40.50.100 214 247 2.8E-18 T 16-09-2016 BER92_RS06550 f4faf019aa67fd25f16bb551d8202980 397 Gene3D G3DSA:2.40.50.100 59 93 2.8E-18 T 16-09-2016 BER92_RS14920 0df9821cf1127ceb32c3d002d238c58a 418 PANTHER PTHR33803 1 418 0.0 T 16-09-2016 BER92_RS14920 0df9821cf1127ceb32c3d002d238c58a 418 PANTHER PTHR33803:SF1 1 418 0.0 T 16-09-2016 BER92_RS14920 0df9821cf1127ceb32c3d002d238c58a 418 Pfam PF01609 Transposase DDE domain 247 384 1.7E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14920 0df9821cf1127ceb32c3d002d238c58a 418 Pfam PF05598 Transposase domain (DUF772) 22 96 7.7E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS18030 d947603574f55122f7c9068a3b4f32e3 303 PANTHER PTHR20919 2 289 1.8E-96 T 16-09-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 BER92_RS18030 d947603574f55122f7c9068a3b4f32e3 303 Pfam PF04204 Homoserine O-succinyltransferase 2 291 5.2E-111 T 16-09-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 BER92_RS18030 d947603574f55122f7c9068a3b4f32e3 303 SUPERFAMILY SSF52317 18 292 9.47E-90 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS18030 d947603574f55122f7c9068a3b4f32e3 303 PIRSF PIRSF000450 1 296 8.2E-113 T 16-09-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 BER92_RS18030 d947603574f55122f7c9068a3b4f32e3 303 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 4.0E-101 T 16-09-2016 BER92_RS18030 d947603574f55122f7c9068a3b4f32e3 303 Gene3D G3DSA:3.40.50.880 34 293 9.8E-103 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS18030 d947603574f55122f7c9068a3b4f32e3 303 PANTHER PTHR20919:SF0 2 289 1.8E-96 T 16-09-2016 BER92_RS08025 89ae15f983b0f61e7dc0a3d8bd1dfb52 200 Gene3D G3DSA:3.30.70.240 134 198 2.7E-12 T 16-09-2016 IPR000640 Translation elongation factor EFG, V domain BER92_RS08025 89ae15f983b0f61e7dc0a3d8bd1dfb52 200 PANTHER PTHR16301 7 196 1.3E-27 T 16-09-2016 IPR023582 Impact family BER92_RS08025 89ae15f983b0f61e7dc0a3d8bd1dfb52 200 SUPERFAMILY SSF54980 133 196 1.37E-8 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS08025 89ae15f983b0f61e7dc0a3d8bd1dfb52 200 Pfam PF01205 Uncharacterized protein family UPF0029 19 118 3.1E-13 T 16-09-2016 IPR001498 Impact, N-terminal BER92_RS08025 89ae15f983b0f61e7dc0a3d8bd1dfb52 200 PANTHER PTHR16301:SF0 7 196 1.3E-27 T 16-09-2016 BER92_RS08025 89ae15f983b0f61e7dc0a3d8bd1dfb52 200 Pfam PF09186 Domain of unknown function (DUF1949) 135 191 4.4E-8 T 16-09-2016 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal BER92_RS08025 89ae15f983b0f61e7dc0a3d8bd1dfb52 200 SUPERFAMILY SSF54211 9 124 5.31E-23 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS08025 89ae15f983b0f61e7dc0a3d8bd1dfb52 200 Gene3D G3DSA:3.30.230.30 7 124 1.4E-27 T 16-09-2016 IPR001498 Impact, N-terminal BER92_RS09145 2f114e3e4070e92c013b0098eee032b1 182 Pfam PF07996 Type IV secretion system proteins 6 181 2.5E-9 T 16-09-2016 IPR014158 Type IV secretion system, VirB5 BER92_RS09145 2f114e3e4070e92c013b0098eee032b1 182 Gene3D G3DSA:1.20.58.430 6 177 1.4E-4 T 16-09-2016 IPR023220 Type IV secretion system, VirB5-domain BER92_RS09145 2f114e3e4070e92c013b0098eee032b1 182 SUPERFAMILY SSF101082 6 181 2.22E-28 T 16-09-2016 IPR023220 Type IV secretion system, VirB5-domain BER92_RS09145 2f114e3e4070e92c013b0098eee032b1 182 TIGRFAM TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ 2 182 4.1E-45 T 16-09-2016 IPR014147 Type IV conjugative transfer protein TrbJ BER92_RS08285 d48815048b2b27b8a277d4028d991f48 226 PANTHER PTHR11002:SF13 1 209 1.9E-76 T 16-09-2016 BER92_RS08285 d48815048b2b27b8a277d4028d991f48 226 Pfam PF00484 Carbonic anhydrase 34 190 5.9E-52 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08285 d48815048b2b27b8a277d4028d991f48 226 SUPERFAMILY SSF53056 1 203 3.66E-66 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08285 d48815048b2b27b8a277d4028d991f48 226 PANTHER PTHR11002 1 209 1.9E-76 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08285 d48815048b2b27b8a277d4028d991f48 226 Gene3D G3DSA:3.40.1050.10 1 203 1.9E-73 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08285 d48815048b2b27b8a277d4028d991f48 226 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 16-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08285 d48815048b2b27b8a277d4028d991f48 226 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 16-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS08285 d48815048b2b27b8a277d4028d991f48 226 SMART SM00947 27 194 1.0E-65 T 16-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BER92_RS06905 b3efc77a4b77c46cf97bdfaba807731c 126 Pfam PF11743 Protein of unknown function (DUF3301) 17 109 2.1E-28 T 16-09-2016 IPR021732 Protein of unknown function DUF3301 BER92_RS11495 b0031044a4209e554e5e7160cc8fa3e8 259 PANTHER PTHR21485:SF4 9 255 1.4E-102 T 16-09-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 BER92_RS11495 b0031044a4209e554e5e7160cc8fa3e8 259 SUPERFAMILY SSF53448 9 253 7.43E-58 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS11495 b0031044a4209e554e5e7160cc8fa3e8 259 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 7 257 39.058 T 16-09-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 BER92_RS11495 b0031044a4209e554e5e7160cc8fa3e8 259 Gene3D G3DSA:3.90.550.10 9 255 8.4E-75 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS11495 b0031044a4209e554e5e7160cc8fa3e8 259 PANTHER PTHR21485 9 255 1.4E-102 T 16-09-2016 BER92_RS11495 b0031044a4209e554e5e7160cc8fa3e8 259 Pfam PF02348 Cytidylyltransferase 11 230 1.4E-47 T 16-09-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 BER92_RS11495 b0031044a4209e554e5e7160cc8fa3e8 259 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 9 249 1.8E-78 T 16-09-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 BER92_RS13100 f2142faebb46a2786f230ad90c97ac75 133 Gene3D G3DSA:1.20.120.550 12 124 1.1E-12 T 16-09-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain BER92_RS13100 f2142faebb46a2786f230ad90c97ac75 133 Pfam PF01124 MAPEG family 10 125 9.2E-20 T 16-09-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein BER92_RS13100 f2142faebb46a2786f230ad90c97ac75 133 SUPERFAMILY SSF161084 6 131 1.83E-26 T 16-09-2016 BER92_RS02675 0c1b9805e2a4c52a53c298464de3fc27 228 Pfam PF04340 Protein of unknown function, DUF484 4 222 6.7E-68 T 16-09-2016 IPR007435 Protein of unknown function DUF484 BER92_RS02675 0c1b9805e2a4c52a53c298464de3fc27 228 PANTHER PTHR38765 1 222 1.6E-78 T 16-09-2016 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 Gene3D G3DSA:3.30.470.20 129 259 3.0E-56 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 PANTHER PTHR11609 9 307 3.8E-194 T 16-09-2016 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 ProSitePatterns PS01057 SAICAR synthetase signature 1. 117 131 - T 16-09-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 SUPERFAMILY SSF56104 5 304 1.57E-100 T 16-09-2016 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 ProSitePatterns PS01058 SAICAR synthetase signature 2. 216 224 - T 16-09-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 Pfam PF01259 SAICAR synthetase 17 279 5.3E-98 T 16-09-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 Gene3D G3DSA:3.30.200.20 4 128 3.0E-41 T 16-09-2016 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 13 304 28.163 T 16-09-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 PANTHER PTHR11609:SF6 9 307 3.8E-194 T 16-09-2016 BER92_RS18070 dfffefe54806a6767f2315de522ea933 308 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 18 304 9.6E-74 T 16-09-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 BER92_RS18560 0dcd1e048933a7804b1cc1c556b3b54d 455 Pfam PF05598 Transposase domain (DUF772) 59 133 3.0E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS18560 0dcd1e048933a7804b1cc1c556b3b54d 455 PANTHER PTHR33803:SF1 1 361 3.5E-250 T 16-09-2016 BER92_RS18560 0dcd1e048933a7804b1cc1c556b3b54d 455 PANTHER PTHR33803 1 361 3.5E-250 T 16-09-2016 BER92_RS04165 533d8dc1cb1f9fe30da0165eca76fc83 133 Pfam PF00072 Response regulator receiver domain 16 127 4.2E-27 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04165 533d8dc1cb1f9fe30da0165eca76fc83 133 PANTHER PTHR26402:SF568 14 131 2.4E-94 T 16-09-2016 BER92_RS04165 533d8dc1cb1f9fe30da0165eca76fc83 133 SUPERFAMILY SSF52172 13 131 4.13E-36 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS04165 533d8dc1cb1f9fe30da0165eca76fc83 133 SMART SM00448 14 127 3.3E-37 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04165 533d8dc1cb1f9fe30da0165eca76fc83 133 Gene3D G3DSA:3.40.50.2300 12 131 1.9E-36 T 16-09-2016 BER92_RS04165 533d8dc1cb1f9fe30da0165eca76fc83 133 PANTHER PTHR26402 14 131 2.4E-94 T 16-09-2016 BER92_RS14025 2b4ec82bff2e0866fcccb0efcb4dba70 169 PANTHER PTHR38099 1 169 2.1E-75 T 16-09-2016 BER92_RS14025 2b4ec82bff2e0866fcccb0efcb4dba70 169 Pfam PF02620 Uncharacterized ACR, COG1399 61 167 3.0E-11 T 16-09-2016 IPR003772 Protein of unknown function DUF177 BER92_RS02520 7502a7ddbaa06574e68eb4c0abe1c119 303 Gene3D G3DSA:1.20.58.340 227 303 4.4E-23 T 16-09-2016 BER92_RS02520 7502a7ddbaa06574e68eb4c0abe1c119 303 SUPERFAMILY SSF144083 238 300 1.7E-17 T 16-09-2016 BER92_RS02520 7502a7ddbaa06574e68eb4c0abe1c119 303 PANTHER PTHR21535:SF37 17 302 2.1E-40 T 16-09-2016 BER92_RS02520 7502a7ddbaa06574e68eb4c0abe1c119 303 PANTHER PTHR21535 17 302 2.1E-40 T 16-09-2016 BER92_RS02520 7502a7ddbaa06574e68eb4c0abe1c119 303 Pfam PF01544 CorA-like Mg2+ transporter protein 16 299 8.5E-52 T 16-09-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BER92_RS02520 7502a7ddbaa06574e68eb4c0abe1c119 303 SUPERFAMILY SSF143865 12 236 3.14E-26 T 16-09-2016 BER92_RS05655 285f8c17edc3e21edab512a2a10941fa 248 SMART SM00052 2 241 8.8E-30 T 16-09-2016 IPR001633 EAL domain BER92_RS05655 285f8c17edc3e21edab512a2a10941fa 248 Gene3D G3DSA:3.20.20.450 20 237 2.1E-50 T 16-09-2016 IPR001633 EAL domain BER92_RS05655 285f8c17edc3e21edab512a2a10941fa 248 PANTHER PTHR33121 17 244 1.0E-104 T 16-09-2016 BER92_RS05655 285f8c17edc3e21edab512a2a10941fa 248 Pfam PF00563 EAL domain 21 236 4.2E-46 T 16-09-2016 IPR001633 EAL domain BER92_RS05655 285f8c17edc3e21edab512a2a10941fa 248 SUPERFAMILY SSF141868 20 237 3.92E-57 T 16-09-2016 IPR001633 EAL domain BER92_RS05655 285f8c17edc3e21edab512a2a10941fa 248 PANTHER PTHR33121:SF15 17 244 1.0E-104 T 16-09-2016 BER92_RS18960 99860698353ab4aab690ef1b0e94f675 75 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 6.8E-23 T 16-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BER92_RS18960 99860698353ab4aab690ef1b0e94f675 75 Pfam PF02416 mttA/Hcf106 family 5 48 1.0E-14 T 16-09-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BER92_RS18960 99860698353ab4aab690ef1b0e94f675 75 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 69 21.402 T 16-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BER92_RS18960 99860698353ab4aab690ef1b0e94f675 75 PANTHER PTHR33162 1 75 3.7E-18 T 16-09-2016 BER92_RS18985 e892100a8a967748c2dee87cf6cc56a1 301 PANTHER PTHR38103 2 301 1.5E-151 T 16-09-2016 BER92_RS18985 e892100a8a967748c2dee87cf6cc56a1 301 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 300 40.273 T 16-09-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 BER92_RS18985 e892100a8a967748c2dee87cf6cc56a1 301 PANTHER PTHR38103:SF1 2 301 1.5E-151 T 16-09-2016 BER92_RS18985 e892100a8a967748c2dee87cf6cc56a1 301 Pfam PF04381 Putative exonuclease, RdgC 1 296 6.2E-99 T 16-09-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 BER92_RS08890 eff795912bc62ab28a7d5402db38e7f5 382 SUPERFAMILY SSF53383 2 381 1.73E-99 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS08890 eff795912bc62ab28a7d5402db38e7f5 382 Gene3D G3DSA:3.90.1150.10 269 381 1.6E-14 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS08890 eff795912bc62ab28a7d5402db38e7f5 382 PANTHER PTHR11751:SF301 6 382 2.2E-150 T 16-09-2016 BER92_RS08890 eff795912bc62ab28a7d5402db38e7f5 382 Gene3D G3DSA:3.40.640.10 40 268 6.8E-76 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS08890 eff795912bc62ab28a7d5402db38e7f5 382 PANTHER PTHR11751 6 382 2.2E-150 T 16-09-2016 BER92_RS08890 eff795912bc62ab28a7d5402db38e7f5 382 Pfam PF00155 Aminotransferase class I and II 28 379 6.1E-57 T 16-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BER92_RS19060 557f95fb983d7375ac113b97b60c2a67 84 PANTHER PTHR23504:SF18 1 71 1.5E-16 T 16-09-2016 BER92_RS19060 557f95fb983d7375ac113b97b60c2a67 84 PANTHER PTHR23504 1 71 1.5E-16 T 16-09-2016 BER92_RS05245 fb6d61c9964aed5b0bd532bddc84d32d 119 PANTHER PTHR12899 3 119 9.4E-38 T 16-09-2016 BER92_RS05245 fb6d61c9964aed5b0bd532bddc84d32d 119 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 5 119 1.9E-36 T 16-09-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05245 fb6d61c9964aed5b0bd532bddc84d32d 119 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 4 119 25.779 T 16-09-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05245 fb6d61c9964aed5b0bd532bddc84d32d 119 SUPERFAMILY SSF53137 5 117 1.96E-48 T 16-09-2016 BER92_RS05245 fb6d61c9964aed5b0bd532bddc84d32d 119 Gene3D G3DSA:3.30.420.100 26 119 9.8E-35 T 16-09-2016 BER92_RS05245 fb6d61c9964aed5b0bd532bddc84d32d 119 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 4 119 8.3E-38 T 16-09-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS12015 0c395d31f53920e35ce79a0696194b01 146 SUPERFAMILY SSF53933 54 138 8.5E-32 T 16-09-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 BER92_RS12015 0c395d31f53920e35ce79a0696194b01 146 Pfam PF00545 ribonuclease 55 135 2.3E-26 T 16-09-2016 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 BER92_RS12015 0c395d31f53920e35ce79a0696194b01 146 Gene3D G3DSA:3.10.450.30 55 137 2.5E-36 T 16-09-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 SUPERFAMILY SSF50341 18 160 1.96E-32 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 PANTHER PTHR22617 9 173 7.7E-95 T 16-09-2016 BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 Gene3D G3DSA:2.30.30.40 96 148 4.3E-4 T 16-09-2016 BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 SUPERFAMILY SSF52172 181 308 1.99E-22 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 Pfam PF01584 CheW-like domain 23 159 2.9E-32 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 SMART SM00448 182 303 1.6E-13 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 Pfam PF00072 Response regulator receiver domain 184 296 1.3E-16 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 SMART SM00260 18 157 8.7E-23 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 PANTHER PTHR22617:SF30 9 173 7.7E-95 T 16-09-2016 BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 PIRSF PIRSF002867 2 311 1.1E-97 T 16-09-2016 IPR024181 Chemotaxis response regulator CheV BER92_RS10240 4019fcc0ded1f0fa6f60b63041496fbe 314 Gene3D G3DSA:3.40.50.2300 180 305 3.9E-23 T 16-09-2016 BER92_RS11635 c8fa40d7e394fa78f05d45ce34c9bcd5 474 Pfam PF01609 Transposase DDE domain 303 440 2.2E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11635 c8fa40d7e394fa78f05d45ce34c9bcd5 474 Pfam PF05598 Transposase domain (DUF772) 78 152 9.3E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS11635 c8fa40d7e394fa78f05d45ce34c9bcd5 474 PANTHER PTHR33803 1 474 0.0 T 16-09-2016 BER92_RS11635 c8fa40d7e394fa78f05d45ce34c9bcd5 474 PANTHER PTHR33803:SF1 1 474 0.0 T 16-09-2016 BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 PANTHER PTHR30195 264 1011 0.0 T 16-09-2016 BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 Gene3D G3DSA:3.40.50.300 304 499 1.8E-15 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 PANTHER PTHR30195 5 230 0.0 T 16-09-2016 BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 PANTHER PTHR30195:SF15 5 230 0.0 T 16-09-2016 BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 PANTHER PTHR30195:SF15 264 1011 0.0 T 16-09-2016 BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 9 225 2.5E-38 T 16-09-2016 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 SUPERFAMILY SSF52540 281 529 2.4E-21 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 SUPERFAMILY SSF52540 342 391 1.0E-4 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 SUPERFAMILY SSF52540 643 732 1.0E-4 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 SMART SM00487 310 524 6.0E-7 T 16-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 90 746 1.1E-120 T 16-09-2016 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 BER92_RS15475 d0f59bd96cab618dd4d5efeaa65898e6 1096 Pfam PF04851 Type III restriction enzyme, res subunit 314 487 2.6E-18 T 16-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BER92_RS11615 311fe2d139b12457d01ddfc5607da40b 130 SUPERFAMILY SSF46626 31 130 2.33E-19 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS11615 311fe2d139b12457d01ddfc5607da40b 130 Pfam PF00034 Cytochrome c 59 130 1.7E-7 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS11615 311fe2d139b12457d01ddfc5607da40b 130 PANTHER PTHR33751 55 130 4.8E-18 T 16-09-2016 BER92_RS11615 311fe2d139b12457d01ddfc5607da40b 130 Gene3D G3DSA:1.10.760.10 38 130 4.4E-22 T 16-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 BER92_RS09195 97d14f4b9dfbad86f68330f143a4790c 108 PANTHER PTHR40080 6 108 4.5E-42 T 16-09-2016 BER92_RS09195 97d14f4b9dfbad86f68330f143a4790c 108 Gene3D G3DSA:1.10.1270.10 15 104 5.2E-34 T 16-09-2016 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 BER92_RS09195 97d14f4b9dfbad86f68330f143a4790c 108 TIGRFAM TIGR02531 yecD_yerC: TrpR homolog YerC/YecD 16 98 4.8E-14 T 16-09-2016 IPR013368 TrpR homologue YerC/YecD BER92_RS09195 97d14f4b9dfbad86f68330f143a4790c 108 PANTHER PTHR40080:SF1 6 108 4.5E-42 T 16-09-2016 BER92_RS09195 97d14f4b9dfbad86f68330f143a4790c 108 Pfam PF01371 Trp repressor protein 16 100 3.1E-27 T 16-09-2016 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 BER92_RS09195 97d14f4b9dfbad86f68330f143a4790c 108 SUPERFAMILY SSF48295 16 100 8.89E-23 T 16-09-2016 IPR010921 Trp repressor/replication initiator GO:0043565 BER92_RS06465 c0b0e08241c2563f8b337599e79ea114 256 Gene3D G3DSA:2.60.40.360 40 157 8.5E-17 T 16-09-2016 IPR008962 PapD-like BER92_RS06465 c0b0e08241c2563f8b337599e79ea114 256 PANTHER PTHR30251 12 255 8.8E-102 T 16-09-2016 BER92_RS06465 c0b0e08241c2563f8b337599e79ea114 256 PANTHER PTHR30251:SF4 12 255 8.8E-102 T 16-09-2016 BER92_RS06465 c0b0e08241c2563f8b337599e79ea114 256 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 40 158 1.2E-22 T 16-09-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BER92_RS06465 c0b0e08241c2563f8b337599e79ea114 256 SUPERFAMILY SSF49354 35 158 9.68E-25 T 16-09-2016 IPR008962 PapD-like BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 SUPERFAMILY SSF52540 1 186 3.12E-38 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 Hamap MF_00235 Adenylate kinase [adk]. 1 186 46.683 T 16-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 16-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 PANTHER PTHR23359 1 185 1.4E-82 T 16-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 PRINTS PR00094 Adenylate kinase signature 133 148 1.4E-36 T 16-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 PRINTS PR00094 Adenylate kinase signature 150 164 1.4E-36 T 16-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 PRINTS PR00094 Adenylate kinase signature 4 17 1.4E-36 T 16-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 PRINTS PR00094 Adenylate kinase signature 81 97 1.4E-36 T 16-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 PRINTS PR00094 Adenylate kinase signature 32 46 1.4E-36 T 16-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 Pfam PF00406 Adenylate kinase 5 163 1.2E-55 T 16-09-2016 BER92_RS03425 bd2e4c4d4af023f903d452bc70326ac5 187 Gene3D G3DSA:3.40.50.300 1 184 6.2E-63 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11855 a4375630ac1b30aac8c756df2a5037b4 121 Pfam PF07883 Cupin domain 34 102 3.4E-20 T 16-09-2016 IPR013096 Cupin 2, conserved barrel BER92_RS11855 a4375630ac1b30aac8c756df2a5037b4 121 SUPERFAMILY SSF51182 5 109 2.76E-28 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS11855 a4375630ac1b30aac8c756df2a5037b4 121 Gene3D G3DSA:2.60.120.10 5 110 1.1E-27 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS01820 0d1f3ec46a5d20b5dfeea70f7d3b5be0 108 Gene3D G3DSA:3.40.30.10 5 107 3.3E-16 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS01820 0d1f3ec46a5d20b5dfeea70f7d3b5be0 108 SUPERFAMILY SSF52833 4 107 1.85E-17 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS01820 0d1f3ec46a5d20b5dfeea70f7d3b5be0 108 Pfam PF00085 Thioredoxin 5 105 1.1E-10 T 16-09-2016 IPR013766 Thioredoxin domain GO:0045454 BER92_RS11875 d77f33772e251b6b5b098feb009f14af 447 TIGRFAM TIGR00761 argB: acetylglutamate kinase 43 264 2.4E-61 T 16-09-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11875 d77f33772e251b6b5b098feb009f14af 447 PANTHER PTHR23342:SF0 1 435 3.5E-187 T 16-09-2016 BER92_RS11875 d77f33772e251b6b5b098feb009f14af 447 PANTHER PTHR23342 1 435 3.5E-187 T 16-09-2016 BER92_RS11875 d77f33772e251b6b5b098feb009f14af 447 PIRSF PIRSF036441 22 447 7.6E-288 T 16-09-2016 IPR011242 Acetylglutamate kinase argB GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 BER92_RS11875 d77f33772e251b6b5b098feb009f14af 447 SUPERFAMILY SSF55729 307 402 6.62E-6 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS11875 d77f33772e251b6b5b098feb009f14af 447 Gene3D G3DSA:3.40.1160.10 41 292 2.2E-69 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS11875 d77f33772e251b6b5b098feb009f14af 447 Pfam PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase 276 439 3.0E-54 T 16-09-2016 IPR006855 Vertebrate-like NAGS Gcn5-related N-acetyltransferase (GNAT) domain KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 BER92_RS11875 d77f33772e251b6b5b098feb009f14af 447 Pfam PF00696 Amino acid kinase family 44 259 4.6E-31 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS11875 d77f33772e251b6b5b098feb009f14af 447 SUPERFAMILY SSF53633 16 294 3.01E-53 T 16-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 BER92_RS12765 26b0a58811fd2baf65ec0c184456a26e 190 Hamap MF_00528 Septum formation protein Maf [maf]. 1 190 28.345 T 16-09-2016 IPR003697 Maf-like protein GO:0005737 BER92_RS12765 26b0a58811fd2baf65ec0c184456a26e 190 PIRSF PIRSF006305 1 190 2.3E-44 T 16-09-2016 IPR003697 Maf-like protein GO:0005737 BER92_RS12765 26b0a58811fd2baf65ec0c184456a26e 190 SUPERFAMILY SSF52972 1 185 7.85E-56 T 16-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like BER92_RS12765 26b0a58811fd2baf65ec0c184456a26e 190 Gene3D G3DSA:3.90.950.10 2 188 1.4E-61 T 16-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like BER92_RS12765 26b0a58811fd2baf65ec0c184456a26e 190 Pfam PF02545 Maf-like protein 2 186 1.0E-50 T 16-09-2016 IPR003697 Maf-like protein GO:0005737 BER92_RS12765 26b0a58811fd2baf65ec0c184456a26e 190 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 4.1E-44 T 16-09-2016 IPR003697 Maf-like protein GO:0005737 BER92_RS02370 c0711a5f315f5fe994b3bb775c765359 200 PIRSF PIRSF000498 1 200 1.9E-73 T 16-09-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02370 c0711a5f315f5fe994b3bb775c765359 200 SUPERFAMILY SSF63380 1 93 3.4E-23 T 16-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 BER92_RS02370 c0711a5f315f5fe994b3bb775c765359 200 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 194 1.7E-59 T 16-09-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02370 c0711a5f315f5fe994b3bb775c765359 200 Pfam PF00677 Lumazine binding domain 100 184 7.6E-22 T 16-09-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02370 c0711a5f315f5fe994b3bb775c765359 200 Pfam PF00677 Lumazine binding domain 3 87 2.9E-20 T 16-09-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02370 c0711a5f315f5fe994b3bb775c765359 200 Gene3D G3DSA:2.40.30.20 5 104 1.2E-29 T 16-09-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS02370 c0711a5f315f5fe994b3bb775c765359 200 Gene3D G3DSA:2.40.30.20 105 195 4.6E-32 T 16-09-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS02370 c0711a5f315f5fe994b3bb775c765359 200 PANTHER PTHR21098 1 194 4.9E-98 T 16-09-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02370 c0711a5f315f5fe994b3bb775c765359 200 SUPERFAMILY SSF63380 93 195 1.45E-31 T 16-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 BER92_RS01215 03d13ecc61da0d59ac926b058146d839 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 13.714 T 16-09-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS01215 03d13ecc61da0d59ac926b058146d839 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 1.6E-23 T 16-09-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS01215 03d13ecc61da0d59ac926b058146d839 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 16-09-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS01215 03d13ecc61da0d59ac926b058146d839 55 SUPERFAMILY SSF57829 1 53 2.56E-19 T 16-09-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 BER92_RS01215 03d13ecc61da0d59ac926b058146d839 55 PANTHER PTHR15238 1 55 5.1E-23 T 16-09-2016 BER92_RS01215 03d13ecc61da0d59ac926b058146d839 55 Pfam PF00471 Ribosomal protein L33 8 53 1.2E-17 T 16-09-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 Gene3D G3DSA:2.40.128.130 637 906 1.0E-34 T 16-09-2016 IPR005546 Autotransporter beta-domain BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 Pfam PF00082 Subtilase family 84 355 5.2E-37 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 Gene3D G3DSA:3.40.50.200 67 366 3.9E-50 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 PANTHER PTHR10795:SF419 73 382 9.8E-19 T 16-09-2016 BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 PANTHER PTHR10795 73 382 9.8E-19 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 PRINTS PR00723 Subtilisin serine protease family (S8) signature 126 139 6.0E-6 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 PRINTS PR00723 Subtilisin serine protease family (S8) signature 84 103 6.0E-6 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 PRINTS PR00723 Subtilisin serine protease family (S8) signature 304 320 6.0E-6 T 16-09-2016 IPR015500 Peptidase S8, subtilisin-related BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 Pfam PF03797 Autotransporter beta-domain 639 890 8.8E-28 T 16-09-2016 IPR005546 Autotransporter beta-domain BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 Pfam PF12951 Passenger-associated-transport-repeat 395 424 5.9E-11 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 461 906 3.2E-5 T 16-09-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 SMART SM00869 637 895 1.1E-26 T 16-09-2016 IPR005546 Autotransporter beta-domain BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 395 424 1.8E-12 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 SUPERFAMILY SSF52743 72 368 2.23E-46 T 16-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 Gene3D G3DSA:2.160.20.20 367 598 4.1E-7 T 16-09-2016 IPR012332 P22 tailspike C-terminal domain-like BER92_RS10545 6cbd04883a7991e6d92ab3731dc9c161 906 SUPERFAMILY SSF103515 628 906 1.06E-34 T 16-09-2016 IPR005546 Autotransporter beta-domain BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 160 3.5E-35 T 16-09-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 Gene3D G3DSA:3.40.50.1370 4 158 1.2E-50 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 185 332 8.6E-34 T 16-09-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 SUPERFAMILY SSF53671 2 335 6.72E-73 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 Gene3D G3DSA:3.40.50.1370 159 321 9.6E-47 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 PANTHER PTHR11405 1 338 2.5E-92 T 16-09-2016 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 PANTHER PTHR11405:SF1 1 338 2.5E-92 T 16-09-2016 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 PRINTS PR00101 Aspartate carbamoyltransferase signature 147 164 2.2E-10 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 PRINTS PR00101 Aspartate carbamoyltransferase signature 35 57 2.2E-10 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 PRINTS PR00101 Aspartate carbamoyltransferase signature 315 329 2.2E-10 T 16-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 299 322 7.7E-13 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 287 296 7.7E-13 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS11890 fb4543e3f3bfc5446a6c1c63cfbb46ff 341 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 45 64 7.7E-13 T 16-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BER92_RS01490 e78834fc93cb90ab9b6ac4e93d8f8bc0 295 Pfam PF08338 Domain of unknown function (DUF1731) 247 292 1.8E-17 T 16-09-2016 IPR013549 Domain of unknown function DUF1731 BER92_RS01490 e78834fc93cb90ab9b6ac4e93d8f8bc0 295 Gene3D G3DSA:3.40.50.720 1 234 9.0E-25 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01490 e78834fc93cb90ab9b6ac4e93d8f8bc0 295 SUPERFAMILY SSF51735 1 293 4.03E-40 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01490 e78834fc93cb90ab9b6ac4e93d8f8bc0 295 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 4 289 2.1E-102 T 16-09-2016 IPR010099 Epimerase family protein SDR39U1 BER92_RS01490 e78834fc93cb90ab9b6ac4e93d8f8bc0 295 PANTHER PTHR11092:SF0 1 295 2.7E-128 T 16-09-2016 BER92_RS01490 e78834fc93cb90ab9b6ac4e93d8f8bc0 295 PANTHER PTHR11092 1 295 2.7E-128 T 16-09-2016 IPR010099 Epimerase family protein SDR39U1 BER92_RS01490 e78834fc93cb90ab9b6ac4e93d8f8bc0 295 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 121 9.9E-12 T 16-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 BER92_RS07710 8fd4cf829f9a09d86706796c6812f9ea 336 Pfam PF04335 VirB8 protein 21 241 7.5E-49 T 16-09-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 BER92_RS07710 8fd4cf829f9a09d86706796c6812f9ea 336 SUPERFAMILY SSF54427 97 242 7.01E-32 T 16-09-2016 IPR032710 NTF2-like domain BER92_RS17885 74834fbb72cdc6fae1a826a87f982ae1 149 Pfam PF04519 Polymer-forming cytoskeletal 16 115 8.9E-25 T 16-09-2016 IPR007607 Protein of unknown function DUF583 BER92_RS17885 74834fbb72cdc6fae1a826a87f982ae1 149 PANTHER PTHR35024 10 149 1.7E-38 T 16-09-2016 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 389 514 4.2E-45 T 16-09-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 SUPERFAMILY SSF50615 12 101 2.75E-22 T 16-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 Gene3D G3DSA:1.20.150.20 390 516 1.7E-48 T 16-09-2016 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 SUPERFAMILY SSF47917 390 517 2.88E-46 T 16-09-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 Gene3D G3DSA:2.40.30.20 4 100 9.4E-27 T 16-09-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 373 382 - T 16-09-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 156 382 6.2E-73 T 16-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 99 8.3E-11 T 16-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 5 517 2.5E-244 T 16-09-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 PANTHER PTHR15184 1 503 7.3E-285 T 16-09-2016 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 Gene3D G3DSA:3.40.50.300 101 389 4.5E-115 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 SUPERFAMILY SSF52540 103 388 1.92E-95 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 3 519 48.932 T 16-09-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS15905 520528b5382c12abcdc9e972f4f347d6 520 PANTHER PTHR15184:SF3 1 503 7.3E-285 T 16-09-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS07245 e54b73be975f631aef09f21cb3a0107d 184 PANTHER PTHR11995 1 182 1.9E-123 T 16-09-2016 BER92_RS07245 e54b73be975f631aef09f21cb3a0107d 184 Gene3D G3DSA:3.40.50.700 47 175 2.6E-32 T 16-09-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 BER92_RS07245 e54b73be975f631aef09f21cb3a0107d 184 SUPERFAMILY SSF56770 35 179 1.06E-65 T 16-09-2016 BER92_RS07245 e54b73be975f631aef09f21cb3a0107d 184 PANTHER PTHR11995:SF19 1 182 1.9E-123 T 16-09-2016 BER92_RS07245 e54b73be975f631aef09f21cb3a0107d 184 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 27 177 41.252 T 16-09-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 BER92_RS07245 e54b73be975f631aef09f21cb3a0107d 184 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 63 172 7.2E-23 T 16-09-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 BER92_RS07245 e54b73be975f631aef09f21cb3a0107d 184 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 38 177 3.8E-76 T 16-09-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 BER92_RS07245 e54b73be975f631aef09f21cb3a0107d 184 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 144 160 - T 16-09-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 BER92_RS07785 78d7e6bc2268f8b6fb48385ef0456970 327 Gene3D G3DSA:3.40.50.300 144 230 3.1E-7 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07785 78d7e6bc2268f8b6fb48385ef0456970 327 SUPERFAMILY SSF52540 2 231 7.83E-20 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13590 091a2d54469296644b6c8897b1c8d687 233 Gene3D G3DSA:1.10.8.60 164 229 2.3E-23 T 16-09-2016 BER92_RS13590 091a2d54469296644b6c8897b1c8d687 233 PANTHER PTHR30050 1 231 1.7E-83 T 16-09-2016 BER92_RS13590 091a2d54469296644b6c8897b1c8d687 233 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 5 229 4.5E-69 T 16-09-2016 IPR017788 DnaA regulatory inactivator Hda GO:0032297 BER92_RS13590 091a2d54469296644b6c8897b1c8d687 233 Pfam PF01695 IstB-like ATP binding protein 28 79 9.2E-6 T 16-09-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 BER92_RS13590 091a2d54469296644b6c8897b1c8d687 233 Gene3D G3DSA:3.40.50.300 4 158 6.1E-31 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13590 091a2d54469296644b6c8897b1c8d687 233 PANTHER PTHR30050:SF5 1 231 1.7E-83 T 16-09-2016 BER92_RS13590 091a2d54469296644b6c8897b1c8d687 233 SUPERFAMILY SSF52540 30 209 1.84E-23 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13475 5f914a39fc8435114512a9d4e5052497 102 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 4 94 9.7E-22 T 16-09-2016 IPR024476 Protein of unknown function DUF3861 BER92_RS01060 ebe222c7261411c5bb9fe16c115c0e3f 1285 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 954 1283 4.4E-57 T 16-09-2016 IPR007452 Translocation and assembly module TamB BER92_RS01060 ebe222c7261411c5bb9fe16c115c0e3f 1285 PANTHER PTHR36985 1 1285 0.0 T 16-09-2016 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 SUPERFAMILY SSF56645 39 280 1.28E-52 T 16-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 272 3.9E-15 T 16-09-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 589 3.0E-29 T 16-09-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 34 2.4E-8 T 16-09-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 41 158 1.3E-6 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 Gene3D G3DSA:1.10.540.10 40 161 6.7E-14 T 16-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 Gene3D G3DSA:1.20.140.10 269 457 2.2E-50 T 16-09-2016 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 Gene3D G3DSA:2.40.110.10 162 268 5.0E-25 T 16-09-2016 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 284 452 6.7E-23 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 SUPERFAMILY SSF47203 288 459 4.67E-46 T 16-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 PANTHER PTHR10909:SF296 1 477 5.1E-247 T 16-09-2016 BER92_RS06120 ace9bfb5ad9bdf7ec0c8606a7e4504e1 597 PANTHER PTHR10909 1 477 5.1E-247 T 16-09-2016 BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 PANTHER PTHR32303:SF2 31 554 1.6E-132 T 16-09-2016 BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 Gene3D G3DSA:2.140.10.10 60 551 2.1E-88 T 16-09-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 SUPERFAMILY SSF50998 63 539 3.79E-77 T 16-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 Pfam PF13360 PQQ-like domain 96 333 2.1E-21 T 16-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 Pfam PF13360 PQQ-like domain 465 548 6.5E-10 T 16-09-2016 IPR002372 Pyrrolo-quinoline quinone repeat BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 PANTHER PTHR32303 31 554 1.6E-132 T 16-09-2016 BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 SMART SM00564 497 529 9.7E-4 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 SMART SM00564 111 142 0.0013 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 SMART SM00564 429 479 15.0 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 SMART SM00564 203 249 0.0034 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 SMART SM00564 158 190 1.0E-4 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS01075 ee5f43bec5fae0a1262fd3b269f27938 575 SMART SM00564 378 414 270.0 T 16-09-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER92_RS04940 a60f6c8dd68e1277b0ff7f2d074304c3 187 PANTHER PTHR30173:SF6 23 187 9.2E-45 T 16-09-2016 BER92_RS04940 a60f6c8dd68e1277b0ff7f2d074304c3 187 SUPERFAMILY SSF88946 23 95 4.32E-7 T 16-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS04940 a60f6c8dd68e1277b0ff7f2d074304c3 187 Gene3D G3DSA:1.10.1740.10 22 89 2.9E-6 T 16-09-2016 BER92_RS04940 a60f6c8dd68e1277b0ff7f2d074304c3 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 182 5.6E-22 T 16-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS04940 a60f6c8dd68e1277b0ff7f2d074304c3 187 PANTHER PTHR30173 23 187 9.2E-45 T 16-09-2016 BER92_RS04940 a60f6c8dd68e1277b0ff7f2d074304c3 187 Pfam PF08281 Sigma-70, region 4 128 179 3.2E-17 T 16-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS04940 a60f6c8dd68e1277b0ff7f2d074304c3 187 SUPERFAMILY SSF88659 120 184 1.68E-15 T 16-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS04940 a60f6c8dd68e1277b0ff7f2d074304c3 187 Gene3D G3DSA:1.10.10.10 123 185 1.3E-20 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS04940 a60f6c8dd68e1277b0ff7f2d074304c3 187 Pfam PF04542 Sigma-70 region 2 30 89 9.2E-5 T 16-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS12310 05b50a33961bc499d006a6db61618e6c 364 Gene3D G3DSA:3.20.20.70 3 362 3.3E-123 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS12310 05b50a33961bc499d006a6db61618e6c 364 PANTHER PTHR22893:SF14 6 362 4.4E-162 T 16-09-2016 BER92_RS12310 05b50a33961bc499d006a6db61618e6c 364 SUPERFAMILY SSF51395 5 362 1.89E-115 T 16-09-2016 BER92_RS12310 05b50a33961bc499d006a6db61618e6c 364 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 9 340 1.1E-77 T 16-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BER92_RS12310 05b50a33961bc499d006a6db61618e6c 364 PANTHER PTHR22893 6 362 4.4E-162 T 16-09-2016 BER92_RS13915 037da7e7ead62d2a65ae6b32799bc8d6 320 PANTHER PTHR12304 1 290 1.8E-65 T 16-09-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase BER92_RS13915 037da7e7ead62d2a65ae6b32799bc8d6 320 SUPERFAMILY SSF53590 33 314 8.11E-53 T 16-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER92_RS13915 037da7e7ead62d2a65ae6b32799bc8d6 320 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 32 293 3.4E-37 T 16-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER92_RS13915 037da7e7ead62d2a65ae6b32799bc8d6 320 PANTHER PTHR12304:SF4 1 290 1.8E-65 T 16-09-2016 BER92_RS13915 037da7e7ead62d2a65ae6b32799bc8d6 320 Gene3D G3DSA:3.90.245.10 32 316 7.0E-54 T 16-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER92_RS16585 b01758cdccfa7c972d35de32170ca84c 364 Pfam PF03969 AFG1-like ATPase 4 359 1.1E-122 T 16-09-2016 IPR005654 ATPase, AFG1-like GO:0005524 BER92_RS16585 b01758cdccfa7c972d35de32170ca84c 364 PANTHER PTHR12169:SF11 1 364 2.1E-173 T 16-09-2016 BER92_RS16585 b01758cdccfa7c972d35de32170ca84c 364 SUPERFAMILY SSF52540 53 180 8.44E-13 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16585 b01758cdccfa7c972d35de32170ca84c 364 Gene3D G3DSA:3.40.50.300 20 171 1.7E-19 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS16585 b01758cdccfa7c972d35de32170ca84c 364 PANTHER PTHR12169 1 364 2.1E-173 T 16-09-2016 IPR005654 ATPase, AFG1-like GO:0005524 BER92_RS16585 b01758cdccfa7c972d35de32170ca84c 364 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 364 48.519 T 16-09-2016 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 BER92_RS02260 c5e6699b34e1a736bb1237da75dc1cbe 366 PANTHER PTHR30368 10 366 4.7E-186 T 16-09-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 BER92_RS02260 c5e6699b34e1a736bb1237da75dc1cbe 366 SUPERFAMILY SSF53850 57 362 2.74E-81 T 16-09-2016 BER92_RS02260 c5e6699b34e1a736bb1237da75dc1cbe 366 PANTHER PTHR30368:SF2 10 366 4.7E-186 T 16-09-2016 BER92_RS02260 c5e6699b34e1a736bb1237da75dc1cbe 366 Pfam PF13531 Bacterial extracellular solute-binding protein 74 315 9.5E-43 T 16-09-2016 BER92_RS02260 c5e6699b34e1a736bb1237da75dc1cbe 366 Gene3D G3DSA:3.40.190.10 55 196 5.4E-48 T 16-09-2016 BER92_RS02260 c5e6699b34e1a736bb1237da75dc1cbe 366 Gene3D G3DSA:3.40.190.10 217 324 8.4E-26 T 16-09-2016 BER92_RS02260 c5e6699b34e1a736bb1237da75dc1cbe 366 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 180 188 - T 16-09-2016 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 BER92_RS02260 c5e6699b34e1a736bb1237da75dc1cbe 366 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 51 362 3.0E-148 T 16-09-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 BER92_RS15035 2208080759aa64a3c6f329f6f882fd31 259 SUPERFAMILY SSF48317 38 246 1.31E-9 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS15035 2208080759aa64a3c6f329f6f882fd31 259 Gene3D G3DSA:1.20.144.10 79 238 1.9E-4 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS15035 2208080759aa64a3c6f329f6f882fd31 259 Pfam PF01569 PAP2 superfamily 114 243 4.2E-9 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS14200 06e73cbfb2cc8c930de15e6290b4f0b0 272 PANTHER PTHR33525 1 208 2.1E-48 T 16-09-2016 BER92_RS14200 06e73cbfb2cc8c930de15e6290b4f0b0 272 Pfam PF08668 HDOD domain 13 202 6.0E-54 T 16-09-2016 IPR013976 Metal-dependent hydrolase HDOD BER92_RS14200 06e73cbfb2cc8c930de15e6290b4f0b0 272 PANTHER PTHR33525:SF3 1 208 2.1E-48 T 16-09-2016 BER92_RS14200 06e73cbfb2cc8c930de15e6290b4f0b0 272 SUPERFAMILY SSF109604 3 245 5.24E-62 T 16-09-2016 BER92_RS14200 06e73cbfb2cc8c930de15e6290b4f0b0 272 Gene3D G3DSA:1.10.3150.10 2 251 9.1E-71 T 16-09-2016 IPR013976 Metal-dependent hydrolase HDOD BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PANTHER PTHR30587:SF0 3 276 1.4E-136 T 16-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 Pfam PF00813 FliP family 78 270 1.7E-71 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 115 134 7.6E-60 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 203 223 7.6E-60 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 95 115 7.6E-60 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 76 95 7.6E-60 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 224 245 7.6E-60 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 248 273 7.6E-60 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PANTHER PTHR30587 3 276 1.4E-136 T 16-09-2016 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 78 274 1.0E-75 T 16-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 196 208 5.9E-17 T 16-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 134 146 5.9E-17 T 16-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 264 274 5.9E-17 T 16-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 74 83 5.9E-17 T 16-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 174 186 5.9E-17 T 16-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 146 160 5.9E-17 T 16-09-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 203 218 - T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS10415 21a564290b39044c75fdf89cf92de63a 277 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 251 263 - T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS13405 3572246e95b8ba472244cf735a588fe4 200 PANTHER PTHR35603 28 199 3.7E-60 T 16-09-2016 BER92_RS13405 3572246e95b8ba472244cf735a588fe4 200 PANTHER PTHR35603:SF1 28 199 3.7E-60 T 16-09-2016 BER92_RS13405 3572246e95b8ba472244cf735a588fe4 200 Pfam PF05433 Glycine zipper 2TM domain 100 138 2.7E-7 T 16-09-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 BER92_RS03735 86cfc74be39561332570b696c2e6f519 148 Pfam PF02381 MraZ protein, putative antitoxin-like 2 75 3.1E-8 T 16-09-2016 IPR020603 MraZ domain BER92_RS03735 86cfc74be39561332570b696c2e6f519 148 Pfam PF02381 MraZ protein, putative antitoxin-like 85 133 2.8E-12 T 16-09-2016 IPR020603 MraZ domain BER92_RS03735 86cfc74be39561332570b696c2e6f519 148 PANTHER PTHR34701 2 145 1.3E-59 T 16-09-2016 BER92_RS03735 86cfc74be39561332570b696c2e6f519 148 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 148 41.25 T 16-09-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 BER92_RS03735 86cfc74be39561332570b696c2e6f519 148 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 146 6.0E-29 T 16-09-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 BER92_RS03735 86cfc74be39561332570b696c2e6f519 148 SUPERFAMILY SSF89447 2 136 7.25E-36 T 16-09-2016 BER92_RS03735 86cfc74be39561332570b696c2e6f519 148 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 125 3.0E-68 T 16-09-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 PANTHER PTHR21087:SF0 6 176 5.7E-59 T 16-09-2016 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 16-09-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 PANTHER PTHR21087 6 176 5.7E-59 T 16-09-2016 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 PRINTS PR01100 Shikimate kinase family signature 98 115 3.2E-21 T 16-09-2016 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 PRINTS PR01100 Shikimate kinase family signature 7 22 3.2E-21 T 16-09-2016 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 PRINTS PR01100 Shikimate kinase family signature 31 44 3.2E-21 T 16-09-2016 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 PRINTS PR01100 Shikimate kinase family signature 77 86 3.2E-21 T 16-09-2016 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 PRINTS PR01100 Shikimate kinase family signature 59 67 3.2E-21 T 16-09-2016 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 Pfam PF01202 Shikimate kinase 13 169 1.7E-46 T 16-09-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 SUPERFAMILY SSF52540 5 169 4.93E-30 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 Hamap MF_00109 Shikimate kinase [aroK]. 4 170 27.32 T 16-09-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 BER92_RS14680 f8f371f0bd584cc9edcb9641a3dbdbc1 180 Gene3D G3DSA:3.40.50.300 4 170 7.0E-49 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 SUPERFAMILY SSF74731 3 117 1.78E-47 T 16-09-2016 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 PANTHER PTHR10986 2 117 3.9E-59 T 16-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 Pfam PF00453 Ribosomal protein L20 3 109 3.3E-46 T 16-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 PANTHER PTHR10986:SF12 2 117 3.9E-59 T 16-09-2016 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.2E-46 T 16-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 2.5E-38 T 16-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 2.5E-38 T 16-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 2.5E-38 T 16-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 70 4.0E-20 T 16-09-2016 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 Gene3D G3DSA:1.10.1900.20 55 117 2.2E-29 T 16-09-2016 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 28.901 T 16-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 BER92_RS06010 87077c4c8fcd8938dd4797d5058550e8 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 16-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 4 427 40.598 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 SUPERFAMILY SSF53720 3 427 8.83E-78 T 16-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 Gene3D G3DSA:3.40.50.1980 28 240 4.1E-73 T 16-09-2016 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 426 3.8E-159 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PANTHER PTHR21256:SF14 1 427 5.1E-263 T 16-09-2016 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PIRSF PIRSF000099 1 430 1.4E-158 T 16-09-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 2.9E-93 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PRINTS PR00083 Histidinol dehydrogenase signature 320 345 2.9E-93 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PRINTS PR00083 Histidinol dehydrogenase signature 361 379 2.9E-93 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PRINTS PR00083 Histidinol dehydrogenase signature 169 195 2.9E-93 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PRINTS PR00083 Histidinol dehydrogenase signature 134 160 2.9E-93 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 2.9E-93 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PRINTS PR00083 Histidinol dehydrogenase signature 199 224 2.9E-93 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 2.9E-93 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 PANTHER PTHR21256 1 427 5.1E-263 T 16-09-2016 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 Pfam PF00815 Histidinol dehydrogenase 26 427 3.8E-162 T 16-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS09205 765eb33bc874940abd77efa200b63876 431 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 16-09-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 BER92_RS18240 15100d86cb4fb103b3fa84326a79957e 317 PIRSF PIRSF035875 4 295 3.9E-64 T 16-09-2016 IPR017039 Virulence factor BrkB BER92_RS18240 15100d86cb4fb103b3fa84326a79957e 317 PANTHER PTHR30213 4 295 9.2E-77 T 16-09-2016 BER92_RS18240 15100d86cb4fb103b3fa84326a79957e 317 PANTHER PTHR30213:SF1 4 295 9.2E-77 T 16-09-2016 BER92_RS18240 15100d86cb4fb103b3fa84326a79957e 317 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 23 278 2.9E-29 T 16-09-2016 IPR017039 Virulence factor BrkB BER92_RS18240 15100d86cb4fb103b3fa84326a79957e 317 Pfam PF03631 Virulence factor BrkB 32 279 3.3E-51 T 16-09-2016 IPR017039 Virulence factor BrkB BER92_RS10395 2b972b508162aa7c58a2ecdaa7ca3126 174 PANTHER PTHR35091 7 174 1.7E-67 T 16-09-2016 BER92_RS10395 2b972b508162aa7c58a2ecdaa7ca3126 174 Pfam PF03748 Flagellar basal body-associated protein FliL 72 174 2.0E-23 T 16-09-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 BER92_RS10395 2b972b508162aa7c58a2ecdaa7ca3126 174 PANTHER PTHR35091:SF1 7 174 1.7E-67 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PANTHER PTHR22912:SF106 1 455 9.5E-200 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 455 1.8E-33 T 16-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 325 1.8E-57 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PIRSF PIRSF000350 1 455 1.2E-72 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 3.3E-31 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 3.3E-31 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 3.3E-31 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 3.3E-31 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 171 189 3.3E-31 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 2.1E-68 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 2.1E-68 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 2.1E-68 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 2.1E-68 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 2.1E-68 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 2.1E-68 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 2.1E-68 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 171 196 2.1E-68 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 2.1E-68 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 PANTHER PTHR22912 1 455 9.5E-200 T 16-09-2016 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 Gene3D G3DSA:3.30.390.30 346 455 2.4E-42 T 16-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 SUPERFAMILY SSF55424 343 456 4.81E-34 T 16-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 Gene3D G3DSA:3.50.50.60 143 334 1.5E-46 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 SUPERFAMILY SSF51905 7 373 1.34E-52 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 Gene3D G3DSA:3.50.50.60 5 142 1.4E-38 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12430 929607d3d683307f4bb9b5bdd1fa3d5a 456 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 16-09-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BER92_RS04130 8a3a4f0d8f716ff8522937962b2155a9 700 PANTHER PTHR22916:SF26 22 318 1.3E-99 T 16-09-2016 BER92_RS04130 8a3a4f0d8f716ff8522937962b2155a9 700 SUPERFAMILY SSF53448 64 313 1.24E-51 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS04130 8a3a4f0d8f716ff8522937962b2155a9 700 Pfam PF13692 Glycosyl transferases group 1 527 665 2.8E-26 T 16-09-2016 BER92_RS04130 8a3a4f0d8f716ff8522937962b2155a9 700 SUPERFAMILY SSF53756 354 697 8.37E-25 T 16-09-2016 BER92_RS04130 8a3a4f0d8f716ff8522937962b2155a9 700 Gene3D G3DSA:3.90.550.10 72 318 2.5E-53 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS04130 8a3a4f0d8f716ff8522937962b2155a9 700 PANTHER PTHR22916 22 318 1.3E-99 T 16-09-2016 BER92_RS04130 8a3a4f0d8f716ff8522937962b2155a9 700 Pfam PF00535 Glycosyl transferase family 2 76 198 3.2E-27 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS01340 784d02fc4cde951047424eb0c9dcfe89 44 Pfam PF08085 Entericidin EcnA/B family 22 42 1.5E-8 T 16-09-2016 IPR012556 Entericidin A/B GO:0009636|GO:0016020 BER92_RS18135 a32b8a913f7974401911857261d76289 322 PANTHER PTHR35604 2 322 1.2E-241 T 16-09-2016 BER92_RS18135 a32b8a913f7974401911857261d76289 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS18135 a32b8a913f7974401911857261d76289 322 PANTHER PTHR35604:SF2 2 322 1.2E-241 T 16-09-2016 BER92_RS18135 a32b8a913f7974401911857261d76289 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS08370 a32b8a913f7974401911857261d76289 322 PANTHER PTHR35604 2 322 1.2E-241 T 16-09-2016 BER92_RS08370 a32b8a913f7974401911857261d76289 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS08370 a32b8a913f7974401911857261d76289 322 PANTHER PTHR35604:SF2 2 322 1.2E-241 T 16-09-2016 BER92_RS08370 a32b8a913f7974401911857261d76289 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 SUPERFAMILY SSF56176 10 237 1.58E-56 T 16-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 Gene3D G3DSA:3.30.43.10 9 69 4.4E-19 T 16-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 12 237 1.8E-46 T 16-09-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 246 342 6.3E-17 T 16-09-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 SUPERFAMILY SSF55447 244 345 3.01E-26 T 16-09-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 SMART SM01092 245 344 2.7E-27 T 16-09-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 PANTHER PTHR11908 180 346 4.8E-141 T 16-09-2016 BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 PANTHER PTHR11908 8 137 4.8E-141 T 16-09-2016 BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 Gene3D G3DSA:3.30.390.50 244 346 1.6E-34 T 16-09-2016 BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 PANTHER PTHR11908:SF97 8 137 4.8E-141 T 16-09-2016 BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 PANTHER PTHR11908:SF97 180 346 4.8E-141 T 16-09-2016 BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 Gene3D G3DSA:3.30.465.10 74 131 2.6E-34 T 16-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 BER92_RS14275 afa27602d735f59e9d48a10c65e04b51 362 Gene3D G3DSA:3.30.465.10 175 236 2.6E-34 T 16-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 BER92_RS17670 e06aefe8029298e916029a3779a68a42 253 Pfam PF12697 Alpha/beta hydrolase family 12 244 2.0E-22 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS17670 e06aefe8029298e916029a3779a68a42 253 PANTHER PTHR10992 1 251 9.0E-107 T 16-09-2016 BER92_RS17670 e06aefe8029298e916029a3779a68a42 253 PANTHER PTHR10992:SF812 1 251 9.0E-107 T 16-09-2016 BER92_RS17670 e06aefe8029298e916029a3779a68a42 253 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 1 250 41.693 T 16-09-2016 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519|UniPathway: UPA00078 BER92_RS17670 e06aefe8029298e916029a3779a68a42 253 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 7 249 6.2E-90 T 16-09-2016 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519|UniPathway: UPA00078 BER92_RS17670 e06aefe8029298e916029a3779a68a42 253 Gene3D G3DSA:3.40.50.1820 1 251 1.0E-47 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS17670 e06aefe8029298e916029a3779a68a42 253 SUPERFAMILY SSF53474 1 249 3.08E-45 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS17560 857e57f4a4d6b016243f3a4a0dd79063 284 Gene3D G3DSA:3.30.420.10 113 272 2.0E-35 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS17560 857e57f4a4d6b016243f3a4a0dd79063 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS17560 857e57f4a4d6b016243f3a4a0dd79063 284 Pfam PF00665 Integrase core domain 119 233 2.2E-31 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS17560 857e57f4a4d6b016243f3a4a0dd79063 284 SUPERFAMILY SSF53098 112 278 8.85E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS17560 857e57f4a4d6b016243f3a4a0dd79063 284 PANTHER PTHR32552 12 282 3.1E-87 T 16-09-2016 BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 SUPERFAMILY SSF52540 33 232 5.13E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 Gene3D G3DSA:2.70.50.60 266 416 1.3E-45 T 16-09-2016 BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 Pfam PF00005 ABC transporter 41 173 3.7E-23 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 Gene3D G3DSA:3.40.50.300 3 237 6.9E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 Pfam PF14524 Wzt C-terminal domain 276 417 4.8E-24 T 16-09-2016 IPR029439 Wzt, C-terminal BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 PANTHER PTHR24220:SF117 6 16 1.2E-121 T 16-09-2016 BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 PANTHER PTHR24220:SF117 38 320 1.2E-121 T 16-09-2016 BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 PANTHER PTHR24220 6 16 1.2E-121 T 16-09-2016 BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 PANTHER PTHR24220 38 320 1.2E-121 T 16-09-2016 BER92_RS15680 4a778c0f1058f3e575cf0a341234ede7 428 SMART SM00382 50 229 1.2E-12 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS12740 e219f4de450fbc240ea63f30cd8f04c3 199 PANTHER PTHR38101:SF1 1 188 1.6E-78 T 16-09-2016 BER92_RS12740 e219f4de450fbc240ea63f30cd8f04c3 199 SUPERFAMILY SSF158710 26 170 7.19E-46 T 16-09-2016 BER92_RS12740 e219f4de450fbc240ea63f30cd8f04c3 199 PIRSF PIRSF016183 1 175 1.9E-67 T 16-09-2016 IPR006839 Ribosome-associated, YjgA BER92_RS12740 e219f4de450fbc240ea63f30cd8f04c3 199 Gene3D G3DSA:1.10.60.30 103 174 3.1E-32 T 16-09-2016 IPR023153 PSPTO4464-like domain BER92_RS12740 e219f4de450fbc240ea63f30cd8f04c3 199 Gene3D G3DSA:1.10.60.30 25 96 6.0E-25 T 16-09-2016 IPR023153 PSPTO4464-like domain BER92_RS12740 e219f4de450fbc240ea63f30cd8f04c3 199 PANTHER PTHR38101 1 188 1.6E-78 T 16-09-2016 BER92_RS12740 e219f4de450fbc240ea63f30cd8f04c3 199 Pfam PF04751 Protein of unknown function (DUF615) 14 167 2.7E-49 T 16-09-2016 IPR006839 Ribosome-associated, YjgA BER92_RS12740 e219f4de450fbc240ea63f30cd8f04c3 199 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 3 171 23.357 T 16-09-2016 IPR006839 Ribosome-associated, YjgA BER92_RS12735 9feb6b49c66a1cf8ae332f7c5afba21c 455 Pfam PF01523 Putative modulator of DNA gyrase 39 331 1.9E-54 T 16-09-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS12735 9feb6b49c66a1cf8ae332f7c5afba21c 455 PANTHER PTHR30624:SF1 13 454 7.7E-169 T 16-09-2016 BER92_RS12735 9feb6b49c66a1cf8ae332f7c5afba21c 455 SUPERFAMILY SSF111283 21 453 1.05E-123 T 16-09-2016 BER92_RS12735 9feb6b49c66a1cf8ae332f7c5afba21c 455 PANTHER PTHR30624 13 454 7.7E-169 T 16-09-2016 BER92_RS17435 3fdb6dd2117bfd357106e71704554cc5 182 Gene3D G3DSA:2.40.128.110 6 176 2.7E-57 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS17435 3fdb6dd2117bfd357106e71704554cc5 182 SMART SM00867 7 171 1.1E-64 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS17435 3fdb6dd2117bfd357106e71704554cc5 182 SUPERFAMILY SSF101874 5 172 4.97E-53 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS17435 3fdb6dd2117bfd357106e71704554cc5 182 Pfam PF04264 YceI-like domain 8 170 7.4E-43 T 16-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER92_RS17435 3fdb6dd2117bfd357106e71704554cc5 182 PANTHER PTHR34406:SF1 1 179 4.4E-57 T 16-09-2016 BER92_RS17435 3fdb6dd2117bfd357106e71704554cc5 182 PANTHER PTHR34406 1 179 4.4E-57 T 16-09-2016 BER92_RS03175 78bd6506c13b08cd192266c4381cb771 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 1.4E-15 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS03175 78bd6506c13b08cd192266c4381cb771 233 PANTHER PTHR26402:SF518 1 220 3.8E-109 T 16-09-2016 BER92_RS03175 78bd6506c13b08cd192266c4381cb771 233 Gene3D G3DSA:1.10.10.10 124 220 1.6E-23 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS03175 78bd6506c13b08cd192266c4381cb771 233 SMART SM00862 145 218 2.0E-18 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS03175 78bd6506c13b08cd192266c4381cb771 233 SUPERFAMILY SSF52172 1 176 8.11E-37 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS03175 78bd6506c13b08cd192266c4381cb771 233 Pfam PF00072 Response regulator receiver domain 4 111 1.2E-24 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS03175 78bd6506c13b08cd192266c4381cb771 233 Gene3D G3DSA:3.40.50.2300 1 123 5.3E-36 T 16-09-2016 BER92_RS03175 78bd6506c13b08cd192266c4381cb771 233 PANTHER PTHR26402 1 220 3.8E-109 T 16-09-2016 BER92_RS03175 78bd6506c13b08cd192266c4381cb771 233 SMART SM00448 1 112 5.6E-33 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09100 36f6c0914af9975df972448bdc91f3f8 85 SUPERFAMILY SSF46955 9 62 2.75E-6 T 16-09-2016 IPR009061 Putative DNA-binding domain BER92_RS09100 36f6c0914af9975df972448bdc91f3f8 85 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 9 57 8.2E-16 T 16-09-2016 IPR010260 Prophage CP4-57 regulatory protein (AlpA) BER92_RS04540 4147c6065aba1fc56113bad25b6886b3 227 SUPERFAMILY SSF52540 4 191 4.09E-22 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04540 4147c6065aba1fc56113bad25b6886b3 227 Gene3D G3DSA:3.40.50.300 4 192 8.4E-4 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04540 4147c6065aba1fc56113bad25b6886b3 227 PANTHER PTHR36978 1 106 3.5E-24 T 16-09-2016 BER92_RS04540 4147c6065aba1fc56113bad25b6886b3 227 PANTHER PTHR36978:SF1 1 106 3.5E-24 T 16-09-2016 BER92_RS12450 17a35499a5043b66716413f19154ca91 194 Pfam PF00877 NlpC/P60 family 84 189 4.7E-27 T 16-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS12450 17a35499a5043b66716413f19154ca91 194 SUPERFAMILY SSF54001 62 193 4.41E-39 T 16-09-2016 BER92_RS12450 17a35499a5043b66716413f19154ca91 194 PANTHER PTHR21666 54 193 4.4E-40 T 16-09-2016 BER92_RS12450 17a35499a5043b66716413f19154ca91 194 Gene3D G3DSA:3.90.1720.10 65 193 2.9E-43 T 16-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Gene3D G3DSA:3.40.50.300 180 277 3.8E-61 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Gene3D G3DSA:3.40.50.300 2 105 3.8E-61 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Gene3D G3DSA:1.10.10.160 109 179 6.9E-16 T 16-09-2016 IPR013986 DExx box DNA helicase domain BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 4 657 4.6E-288 T 16-09-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 2 658 36.477 T 16-09-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Pfam PF13361 UvrD-like helicase C-terminal domain 269 603 8.1E-60 T 16-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Gene3D G3DSA:3.40.50.300 278 381 1.1E-64 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Gene3D G3DSA:3.40.50.300 540 628 1.1E-64 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 PANTHER PTHR11070:SF19 1 645 0.0 T 16-09-2016 BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 PANTHER PTHR11070 1 645 0.0 T 16-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 SUPERFAMILY SSF52540 2 628 3.12E-159 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Pfam PF00580 UvrD/REP helicase N-terminal domain 129 262 1.1E-38 T 16-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 118 2.9E-30 T 16-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 BER92_RS00340 1c5252cff471cf9b767dab4bd2a9d7bd 658 Gene3D G3DSA:1.10.486.10 382 526 7.5E-35 T 16-09-2016 BER92_RS12170 5c47263e50a4b76175273d07e3c532d9 646 PANTHER PTHR33361:SF4 74 646 2.2E-301 T 16-09-2016 BER92_RS12170 5c47263e50a4b76175273d07e3c532d9 646 PANTHER PTHR33361 74 646 2.2E-301 T 16-09-2016 BER92_RS12170 5c47263e50a4b76175273d07e3c532d9 646 Pfam PF05960 Bacterial protein of unknown function (DUF885) 102 637 3.2E-166 T 16-09-2016 IPR010281 Protein of unknown function DUF885 BER92_RS17860 86f9a3372bc7c60c1c62f5572156dc14 305 PANTHER PTHR10992 16 302 1.2E-48 T 16-09-2016 BER92_RS17860 86f9a3372bc7c60c1c62f5572156dc14 305 PRINTS PR00412 Epoxide hydrolase signature 43 61 4.0E-5 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS17860 86f9a3372bc7c60c1c62f5572156dc14 305 PRINTS PR00412 Epoxide hydrolase signature 115 128 4.0E-5 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS17860 86f9a3372bc7c60c1c62f5572156dc14 305 PRINTS PR00412 Epoxide hydrolase signature 277 299 4.0E-5 T 16-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 BER92_RS17860 86f9a3372bc7c60c1c62f5572156dc14 305 Pfam PF00561 alpha/beta hydrolase fold 38 287 1.5E-22 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS17860 86f9a3372bc7c60c1c62f5572156dc14 305 PANTHER PTHR10992:SF773 16 302 1.2E-48 T 16-09-2016 BER92_RS17860 86f9a3372bc7c60c1c62f5572156dc14 305 SUPERFAMILY SSF53474 4 303 1.95E-59 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS17860 86f9a3372bc7c60c1c62f5572156dc14 305 Gene3D G3DSA:3.40.50.1820 6 303 5.1E-65 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 Pfam PF03462 PCRF domain 13 203 3.2E-70 T 16-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 358 39.758 T 16-09-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 SUPERFAMILY SSF75620 12 354 9.03E-131 T 16-09-2016 BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 16-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 PANTHER PTHR11075:SF9 1 357 2.5E-165 T 16-09-2016 BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 Pfam PF00472 RF-1 domain 213 321 3.3E-43 T 16-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 Gene3D G3DSA:1.20.58.410 8 93 2.6E-15 T 16-09-2016 BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 Gene3D G3DSA:3.30.160.20 213 287 9.4E-35 T 16-09-2016 IPR014720 Double-stranded RNA-binding domain BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 SMART SM00937 63 178 5.4E-63 T 16-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 PANTHER PTHR11075 1 357 2.5E-165 T 16-09-2016 BER92_RS05025 0e0086edfd48f0d8781d39f8f037b816 361 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 3 358 6.2E-155 T 16-09-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 Pfam PF00691 OmpA family 163 257 4.6E-23 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 208 225 1.5E-7 T 16-09-2016 BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 246 264 1.5E-7 T 16-09-2016 BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 226 245 1.5E-7 T 16-09-2016 BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 PANTHER PTHR30128 158 263 1.6E-38 T 16-09-2016 BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 SUPERFAMILY SSF103088 158 263 1.83E-33 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 Gene3D G3DSA:3.30.1330.60 161 263 7.1E-36 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 PRINTS PR01021 OMPA domain signature 208 224 2.0E-10 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 PRINTS PR01021 OMPA domain signature 193 208 2.0E-10 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS11335 6d2ea42e67f93b7ff93c4fa797cd8f51 264 PRINTS PR01021 OMPA domain signature 163 185 2.0E-10 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 PANTHER PTHR30081 312 610 9.0E-201 T 16-09-2016 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 Pfam PF07549 SecD/SecF GG Motif 115 140 6.1E-6 T 16-09-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 SUPERFAMILY SSF82866 409 606 3.14E-38 T 16-09-2016 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 122 598 1.3E-121 T 16-09-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 PANTHER PTHR30081:SF1 222 280 9.0E-201 T 16-09-2016 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 PANTHER PTHR30081:SF1 1 172 9.0E-201 T 16-09-2016 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 PRINTS PR00702 Acriflavin resistance protein family signature 501 525 5.6E-5 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 PRINTS PR00702 Acriflavin resistance protein family signature 576 599 5.6E-5 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 613 44.621 T 16-09-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 344 592 4.0E-62 T 16-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 Pfam PF13721 SecD export protein N-terminal TM region 2 102 1.7E-31 T 16-09-2016 IPR027398 SecD export protein N-terminal TM domain BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 Pfam PF02355 Protein export membrane protein 435 602 3.7E-20 T 16-09-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 PANTHER PTHR30081 1 172 9.0E-201 T 16-09-2016 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 PANTHER PTHR30081:SF1 312 610 9.0E-201 T 16-09-2016 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 Gene3D G3DSA:1.20.1640.10 416 610 6.6E-28 T 16-09-2016 BER92_RS12575 16073a04b7fc7ec3b022d70c4121b297 614 PANTHER PTHR30081 222 280 9.0E-201 T 16-09-2016 BER92_RS04610 f3064dd730757c7d7ceb04702a55c3c6 126 Pfam PF01219 Prokaryotic diacylglycerol kinase 22 121 2.8E-32 T 16-09-2016 IPR000829 Diacylglycerol kinase, prokaryotic GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 BER92_RS04610 f3064dd730757c7d7ceb04702a55c3c6 126 PANTHER PTHR34299 1 126 1.8E-40 T 16-09-2016 BER92_RS04610 f3064dd730757c7d7ceb04702a55c3c6 126 PANTHER PTHR34299:SF1 1 126 1.8E-40 T 16-09-2016 BER92_RS04610 f3064dd730757c7d7ceb04702a55c3c6 126 Gene3D G3DSA:1.10.3830.10 10 126 5.3E-40 T 16-09-2016 BER92_RS09095 94e2d55fb3e8e96185cd8c62b0e4c01a 403 Pfam PF13356 Domain of unknown function (DUF4102) 2 88 1.5E-16 T 16-09-2016 IPR025166 Domain of unknown function DUF4102 BER92_RS09095 94e2d55fb3e8e96185cd8c62b0e4c01a 403 SUPERFAMILY SSF56349 98 384 8.83E-62 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS09095 94e2d55fb3e8e96185cd8c62b0e4c01a 403 Pfam PF00589 Phage integrase family 204 373 9.9E-23 T 16-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS09095 94e2d55fb3e8e96185cd8c62b0e4c01a 403 PANTHER PTHR30629:SF2 1 392 9.6E-89 T 16-09-2016 BER92_RS09095 94e2d55fb3e8e96185cd8c62b0e4c01a 403 Gene3D G3DSA:1.10.150.130 98 192 1.6E-22 T 16-09-2016 IPR023109 Integrase/recombinase, N-terminal BER92_RS09095 94e2d55fb3e8e96185cd8c62b0e4c01a 403 Gene3D G3DSA:1.10.443.10 202 382 8.0E-30 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS09095 94e2d55fb3e8e96185cd8c62b0e4c01a 403 PANTHER PTHR30629 1 392 9.6E-89 T 16-09-2016 BER92_RS04725 abc64c4b46a7cf2af7e540d56856711f 314 PANTHER PTHR24032 1 262 2.3E-90 T 16-09-2016 BER92_RS04725 abc64c4b46a7cf2af7e540d56856711f 314 PANTHER PTHR24032:SF27 1 262 2.3E-90 T 16-09-2016 BER92_RS04725 abc64c4b46a7cf2af7e540d56856711f 314 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 44.753 T 16-09-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 BER92_RS04725 abc64c4b46a7cf2af7e540d56856711f 314 SUPERFAMILY SSF56300 1 259 9.81E-47 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS04725 abc64c4b46a7cf2af7e540d56856711f 314 Pfam PF00149 Calcineurin-like phosphoesterase 1 228 5.3E-13 T 16-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 BER92_RS04725 abc64c4b46a7cf2af7e540d56856711f 314 PIRSF PIRSF000903 1 274 3.2E-117 T 16-09-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 BER92_RS04725 abc64c4b46a7cf2af7e540d56856711f 314 Gene3D G3DSA:3.60.21.10 1 136 1.7E-48 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS04725 abc64c4b46a7cf2af7e540d56856711f 314 Gene3D G3DSA:3.60.21.10 170 272 1.7E-48 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS04725 abc64c4b46a7cf2af7e540d56856711f 314 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 259 3.2E-77 T 16-09-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 BER92_RS18585 a708437989acc58d109277d0ab85ad68 264 PANTHER PTHR30622 1 260 2.8E-109 T 16-09-2016 BER92_RS18585 a708437989acc58d109277d0ab85ad68 264 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 2 260 15.733 T 16-09-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BER92_RS18585 a708437989acc58d109277d0ab85ad68 264 PANTHER PTHR30622:SF3 1 260 2.8E-109 T 16-09-2016 BER92_RS18585 a708437989acc58d109277d0ab85ad68 264 Pfam PF02673 Bacitracin resistance protein BacA 7 254 1.2E-65 T 16-09-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BER92_RS11570 1f16b9f57d34832ce80c7a218d9e9046 131 SUPERFAMILY SSF81343 4 125 2.11E-29 T 16-09-2016 BER92_RS11570 1f16b9f57d34832ce80c7a218d9e9046 131 Gene3D G3DSA:1.20.1300.10 4 124 9.4E-36 T 16-09-2016 BER92_RS11570 1f16b9f57d34832ce80c7a218d9e9046 131 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 5 122 7.0E-34 T 16-09-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 BER92_RS11570 1f16b9f57d34832ce80c7a218d9e9046 131 PANTHER PTHR10978:SF6 4 129 3.5E-80 T 16-09-2016 BER92_RS11570 1f16b9f57d34832ce80c7a218d9e9046 131 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 4 119 1.9E-21 T 16-09-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 BER92_RS11570 1f16b9f57d34832ce80c7a218d9e9046 131 PANTHER PTHR10978 4 129 3.5E-80 T 16-09-2016 BER92_RS11570 1f16b9f57d34832ce80c7a218d9e9046 131 PIRSF PIRSF000178 1 125 1.5E-35 T 16-09-2016 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 Pfam PF00072 Response regulator receiver domain 10 117 1.3E-20 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 147 164 1.9E-9 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 164 184 1.9E-9 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 Gene3D G3DSA:3.40.50.2300 10 120 3.0E-26 T 16-09-2016 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 PANTHER PTHR26402:SF344 7 118 2.4E-35 T 16-09-2016 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 Gene3D G3DSA:1.10.10.60 127 182 2.2E-25 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 PANTHER PTHR26402 7 118 2.4E-35 T 16-09-2016 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 SUPERFAMILY SSF46689 90 180 5.82E-16 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 SMART SM00448 7 118 3.0E-18 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 Pfam PF02954 Bacterial regulatory protein, Fis family 147 180 1.2E-12 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS10720 cd4eeaf1793c6a787b67dd63fd064ff0 192 SUPERFAMILY SSF52172 10 123 2.7E-28 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS15705 5148e1d496e2df823cb792f3bcf54c43 72 Pfam PF04325 Protein of unknown function (DUF465) 20 66 2.3E-12 T 16-09-2016 IPR007420 Protein of unknown function DUF465 BER92_RS09445 e798b6858bdf9e1a8ed9442ce11d9b09 136 Pfam PF01850 PIN domain 3 121 2.8E-8 T 16-09-2016 IPR002716 PIN domain BER92_RS09445 e798b6858bdf9e1a8ed9442ce11d9b09 136 Gene3D G3DSA:3.40.50.1010 1 133 1.9E-5 T 16-09-2016 IPR029060 PIN domain-like BER92_RS09445 e798b6858bdf9e1a8ed9442ce11d9b09 136 SUPERFAMILY SSF88723 1 132 8.41E-13 T 16-09-2016 IPR029060 PIN domain-like BER92_RS05950 0160d50da99b761cda2579ceac5ac65b 135 SUPERFAMILY SSF55174 8 104 8.64E-25 T 16-09-2016 BER92_RS05950 0160d50da99b761cda2579ceac5ac65b 135 Pfam PF01479 S4 domain 11 56 1.6E-8 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS05950 0160d50da99b761cda2579ceac5ac65b 135 PIRSF PIRSF016821 8 134 1.5E-34 T 16-09-2016 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 BER92_RS05950 0160d50da99b761cda2579ceac5ac65b 135 Gene3D G3DSA:3.10.290.10 7 102 1.4E-30 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS05950 0160d50da99b761cda2579ceac5ac65b 135 SMART SM00363 11 73 0.0021 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS05950 0160d50da99b761cda2579ceac5ac65b 135 PANTHER PTHR11079 5 60 1.0E-17 T 16-09-2016 BER92_RS05950 0160d50da99b761cda2579ceac5ac65b 135 PANTHER PTHR11079:SF70 5 60 1.0E-17 T 16-09-2016 BER92_RS00550 2a1246cc6a4901863f393267f5eaf44f 196 SUPERFAMILY SSF52833 54 189 3.56E-19 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS00550 2a1246cc6a4901863f393267f5eaf44f 196 Gene3D G3DSA:3.40.30.10 67 191 7.7E-17 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS00550 2a1246cc6a4901863f393267f5eaf44f 196 Pfam PF13899 Thioredoxin-like 75 159 3.5E-12 T 16-09-2016 BER92_RS17935 4f1ff8a55569388e5732fd6355d1c33d 130 PANTHER PTHR21569 1 130 8.0E-73 T 16-09-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 BER92_RS17935 4f1ff8a55569388e5732fd6355d1c33d 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 16-09-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 BER92_RS17935 4f1ff8a55569388e5732fd6355d1c33d 130 SUPERFAMILY SSF54211 6 130 1.74E-47 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS17935 4f1ff8a55569388e5732fd6355d1c33d 130 Gene3D G3DSA:3.30.230.10 5 130 2.7E-51 T 16-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER92_RS17935 4f1ff8a55569388e5732fd6355d1c33d 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 32.463 T 16-09-2016 IPR023035 Ribosomal protein S9, bacterial/plastid BER92_RS17935 4f1ff8a55569388e5732fd6355d1c33d 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 4.2E-48 T 16-09-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 BER92_RS01195 62a2b973ce4962f160a430592f9c30a6 212 PIRSF PIRSF003078 1 212 8.1E-72 T 16-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BER92_RS01195 62a2b973ce4962f160a430592f9c30a6 212 PANTHER PTHR31760 31 211 6.8E-71 T 16-09-2016 BER92_RS01195 62a2b973ce4962f160a430592f9c30a6 212 PANTHER PTHR31760:SF0 31 211 6.8E-71 T 16-09-2016 BER92_RS01195 62a2b973ce4962f160a430592f9c30a6 212 SUPERFAMILY SSF53335 30 211 2.19E-35 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS01195 62a2b973ce4962f160a430592f9c30a6 212 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 20 208 26.218 T 16-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BER92_RS01195 62a2b973ce4962f160a430592f9c30a6 212 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 32 211 3.9E-53 T 16-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BER92_RS01195 62a2b973ce4962f160a430592f9c30a6 212 Pfam PF02527 rRNA small subunit methyltransferase G 31 207 4.8E-52 T 16-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BER92_RS01195 62a2b973ce4962f160a430592f9c30a6 212 Gene3D G3DSA:3.40.50.150 27 211 1.7E-60 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS07500 c0984b0e4220dd22ec820da6e9e0a25e 284 SUPERFAMILY SSF53098 112 278 7.46E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS07500 c0984b0e4220dd22ec820da6e9e0a25e 284 Gene3D G3DSA:3.30.420.10 113 272 7.0E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS07500 c0984b0e4220dd22ec820da6e9e0a25e 284 PANTHER PTHR32552 12 282 3.4E-86 T 16-09-2016 BER92_RS07500 c0984b0e4220dd22ec820da6e9e0a25e 284 Pfam PF00665 Integrase core domain 119 233 3.1E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS07500 c0984b0e4220dd22ec820da6e9e0a25e 284 Pfam PF13276 HTH-like domain 38 91 1.2E-12 T 16-09-2016 IPR025948 HTH-like domain BER92_RS01110 a74b07134c1f29c29ba985982b9e2e87 432 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 19 421 3.3E-133 T 16-09-2016 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 BER92_RS01110 a74b07134c1f29c29ba985982b9e2e87 432 PANTHER PTHR23514:SF11 19 180 3.1E-119 T 16-09-2016 BER92_RS01110 a74b07134c1f29c29ba985982b9e2e87 432 PANTHER PTHR23514:SF11 198 422 3.1E-119 T 16-09-2016 BER92_RS01110 a74b07134c1f29c29ba985982b9e2e87 432 SUPERFAMILY SSF103473 14 424 7.32E-40 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS01110 a74b07134c1f29c29ba985982b9e2e87 432 Gene3D G3DSA:1.20.1250.20 22 226 9.1E-18 T 16-09-2016 BER92_RS01110 a74b07134c1f29c29ba985982b9e2e87 432 Pfam PF07690 Major Facilitator Superfamily 28 378 1.0E-20 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS01110 a74b07134c1f29c29ba985982b9e2e87 432 Gene3D G3DSA:1.20.1250.20 243 427 1.1E-9 T 16-09-2016 BER92_RS01110 a74b07134c1f29c29ba985982b9e2e87 432 PANTHER PTHR23514 19 180 3.1E-119 T 16-09-2016 BER92_RS01110 a74b07134c1f29c29ba985982b9e2e87 432 PANTHER PTHR23514 198 422 3.1E-119 T 16-09-2016 BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 2437 2749 9.42E-17 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 1083 1311 7.53E-31 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 1343 1416 7.53E-31 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1911 1942 3.8E-7 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2375 2406 1.9E-6 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1281 1309 9.0E-6 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2095 2123 1.3E-5 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2645 2673 1.3E-5 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 850 881 2.8E-9 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 939 967 2.6E-5 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1451 1480 3.7E-11 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 506 535 6.2E-6 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1107 1138 1.3E-8 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1825 1856 2.0E-6 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1364 1395 1.7E-6 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1192 1223 8.0E-7 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1021 1052 1.4E-5 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1544 1571 3.6E-5 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2461 2492 3.8E-8 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 763 794 5.1E-9 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1997 2025 3.6E-7 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2547 2575 3.6E-7 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 591 622 1.0E-8 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 677 708 4.0E-7 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 PANTHER PTHR35037 1 2751 0.0 T 16-09-2016 BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 PANTHER PTHR35037:SF3 1 2751 0.0 T 16-09-2016 BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1193 1221 0.003 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 764 793 1.4E-6 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 2548 2576 7.3E-7 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 2095 2121 0.0037 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1544 1570 0.007 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 2645 2671 0.0037 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1022 1050 5.5E-4 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 851 880 2.3E-7 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1365 1394 1.4E-5 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 939 964 5.0E-5 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 678 707 1.9E-6 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1828 1855 2.3E-4 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1912 1941 7.0E-8 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1108 1137 2.1E-6 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 593 621 1.2E-6 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1998 2026 7.3E-7 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 2376 2405 2.5E-4 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1280 1308 5.9E-5 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 506 534 4.4E-4 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 1451 1479 1.2E-9 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF12951 Passenger-associated-transport-repeat 2462 2491 1.6E-8 T 16-09-2016 IPR013425 Autotransporter-associated beta strand repeat BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 997 1082 1.69E-6 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 132 477 2.92E-7 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 8.1E-6 T 16-09-2016 IPR024973 ESPR domain BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 482 835 3.45E-26 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 1890 1966 8.79E-19 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 1663 1858 8.79E-19 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 2440 2516 9.1E-32 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 2080 2408 9.1E-32 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Gene3D G3DSA:2.160.20.20 484 628 5.9E-9 T 16-09-2016 IPR012332 P22 tailspike C-terminal domain-like BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Gene3D G3DSA:2.160.20.20 993 1185 4.3E-12 T 16-09-2016 IPR012332 P22 tailspike C-terminal domain-like BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Gene3D G3DSA:2.160.20.20 743 901 5.4E-14 T 16-09-2016 IPR012332 P22 tailspike C-terminal domain-like BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Gene3D G3DSA:2.160.20.20 2341 2749 6.7E-25 T 16-09-2016 IPR012332 P22 tailspike C-terminal domain-like BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Gene3D G3DSA:2.160.20.20 629 742 5.0E-7 T 16-09-2016 IPR012332 P22 tailspike C-terminal domain-like BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Gene3D G3DSA:2.160.20.20 1792 1960 2.1E-16 T 16-09-2016 IPR012332 P22 tailspike C-terminal domain-like BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 Gene3D G3DSA:2.160.20.20 1247 1657 1.7E-26 T 16-09-2016 IPR012332 P22 tailspike C-terminal domain-like BER92_RS09975 d73e44a8f156b91e99f10f7b972d6c39 2751 SUPERFAMILY SSF51126 1426 1664 3.77E-13 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS03515 9bd10b151f22898f5af494bb955e8b18 198 PIRSF PIRSF006806 1 189 1.5E-28 T 16-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase BER92_RS03515 9bd10b151f22898f5af494bb955e8b18 198 PANTHER PTHR23407 1 186 5.7E-47 T 16-09-2016 BER92_RS03515 9bd10b151f22898f5af494bb955e8b18 198 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 6 186 2.8E-31 T 16-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase BER92_RS03515 9bd10b151f22898f5af494bb955e8b18 198 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 5 186 5.9E-47 T 16-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase BER92_RS03515 9bd10b151f22898f5af494bb955e8b18 198 Gene3D G3DSA:3.40.50.10420 5 188 2.1E-47 T 16-09-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain BER92_RS03515 9bd10b151f22898f5af494bb955e8b18 198 PANTHER PTHR23407:SF1 1 186 5.7E-47 T 16-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase BER92_RS03515 9bd10b151f22898f5af494bb955e8b18 198 SUPERFAMILY SSF100950 4 192 4.6E-48 T 16-09-2016 BER92_RS10410 e99508975446ab31f4db1c00b6248e42 135 PANTHER PTHR38766 2 134 2.3E-38 T 16-09-2016 BER92_RS10410 e99508975446ab31f4db1c00b6248e42 135 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 35 102 6.7E-23 T 16-09-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 BER92_RS10410 e99508975446ab31f4db1c00b6248e42 135 PANTHER PTHR38766:SF1 2 134 2.3E-38 T 16-09-2016 BER92_RS10410 e99508975446ab31f4db1c00b6248e42 135 Pfam PF04347 Flagellar biosynthesis protein, FliO 47 131 4.8E-24 T 16-09-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 BER92_RS15595 a48af6ca47bfb66fb7caa80467dbf817 301 Gene3D G3DSA:3.90.25.10 179 190 3.4E-32 T 16-09-2016 BER92_RS15595 a48af6ca47bfb66fb7caa80467dbf817 301 Gene3D G3DSA:3.90.25.10 225 287 3.4E-32 T 16-09-2016 BER92_RS15595 a48af6ca47bfb66fb7caa80467dbf817 301 SUPERFAMILY SSF51735 3 297 3.52E-94 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15595 a48af6ca47bfb66fb7caa80467dbf817 301 PANTHER PTHR10491 2 297 6.1E-97 T 16-09-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family BER92_RS15595 a48af6ca47bfb66fb7caa80467dbf817 301 PANTHER PTHR10491:SF4 2 297 6.1E-97 T 16-09-2016 BER92_RS15595 a48af6ca47bfb66fb7caa80467dbf817 301 Gene3D G3DSA:3.40.50.720 3 178 2.7E-29 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15595 a48af6ca47bfb66fb7caa80467dbf817 301 Pfam PF04321 RmlD substrate binding domain 3 297 1.9E-107 T 16-09-2016 IPR029903 RmlD-like substrate binding domain BER92_RS15595 a48af6ca47bfb66fb7caa80467dbf817 301 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 4 296 1.0E-104 T 16-09-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family BER92_RS11755 5553c956307c7efb419686fb375783a1 458 Pfam PF05598 Transposase domain (DUF772) 73 147 1.0E-16 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS11755 5553c956307c7efb419686fb375783a1 458 Pfam PF01609 Transposase DDE domain 298 435 7.4E-8 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11755 5553c956307c7efb419686fb375783a1 458 PANTHER PTHR33803:SF1 1 457 0.0 T 16-09-2016 BER92_RS11755 5553c956307c7efb419686fb375783a1 458 PANTHER PTHR33803 1 457 0.0 T 16-09-2016 BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 Pfam PF04542 Sigma-70 region 2 29 96 2.0E-16 T 16-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 SUPERFAMILY SSF88659 127 186 1.98E-16 T 16-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 186 9.1E-29 T 16-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 Gene3D G3DSA:1.10.1740.10 8 109 4.4E-32 T 16-09-2016 BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 6 194 1.9E-102 T 16-09-2016 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 Pfam PF08281 Sigma-70, region 4 134 185 3.3E-18 T 16-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 Gene3D G3DSA:1.10.10.10 127 191 1.9E-24 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 SUPERFAMILY SSF88946 10 107 2.83E-28 T 16-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 51 82 - T 16-09-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BER92_RS06795 874f2d44e76d1ac1d98b1e09bbc0ebfc 206 PANTHER PTHR30173 1 191 2.6E-48 T 16-09-2016 BER92_RS05165 7905e428ef2daf8f5d28d527059ae2d8 216 SUPERFAMILY SSF50447 5 215 6.8E-78 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS05165 7905e428ef2daf8f5d28d527059ae2d8 216 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 6 214 39.105 T 16-09-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05165 7905e428ef2daf8f5d28d527059ae2d8 216 PANTHER PTHR11229 8 213 1.5E-107 T 16-09-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05165 7905e428ef2daf8f5d28d527059ae2d8 216 Gene3D G3DSA:2.40.30.10 8 37 1.0E-8 T 16-09-2016 BER92_RS05165 7905e428ef2daf8f5d28d527059ae2d8 216 Gene3D G3DSA:2.40.30.10 165 211 1.0E-8 T 16-09-2016 BER92_RS05165 7905e428ef2daf8f5d28d527059ae2d8 216 Gene3D G3DSA:4.10.960.10 82 164 1.9E-33 T 16-09-2016 BER92_RS05165 7905e428ef2daf8f5d28d527059ae2d8 216 Pfam PF00297 Ribosomal protein L3 105 188 3.1E-15 T 16-09-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05165 7905e428ef2daf8f5d28d527059ae2d8 216 ProSitePatterns PS00474 Ribosomal protein L3 signature. 108 131 - T 16-09-2016 IPR019926 Ribosomal protein L3, conserved site BER92_RS05165 7905e428ef2daf8f5d28d527059ae2d8 216 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 8 211 3.3E-85 T 16-09-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS12255 d345ad040bad741cbc45b5ac371b2296 356 SUPERFAMILY SSF53335 79 352 8.59E-60 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS12255 d345ad040bad741cbc45b5ac371b2296 356 Pfam PF02353 Mycolic acid cyclopropane synthetase 77 338 4.1E-36 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS12255 d345ad040bad741cbc45b5ac371b2296 356 PANTHER PTHR10108:SF915 2 262 1.7E-186 T 16-09-2016 BER92_RS12255 d345ad040bad741cbc45b5ac371b2296 356 PANTHER PTHR10108:SF915 278 356 1.7E-186 T 16-09-2016 BER92_RS12255 d345ad040bad741cbc45b5ac371b2296 356 PANTHER PTHR10108 278 356 1.7E-186 T 16-09-2016 BER92_RS12255 d345ad040bad741cbc45b5ac371b2296 356 Gene3D G3DSA:3.40.50.150 73 352 2.1E-81 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS12255 d345ad040bad741cbc45b5ac371b2296 356 PANTHER PTHR10108 2 262 1.7E-186 T 16-09-2016 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 PIRSF PIRSF001423 1 556 1.2E-286 T 16-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 Hamap MF_00577 Urocanate hydratase [hutU]. 3 554 49.75 T 16-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 Pfam PF01175 Urocanase 10 545 9.1E-258 T 16-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 PANTHER PTHR12216:SF3 1 553 0.0 T 16-09-2016 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 Gene3D G3DSA:3.40.1770.10 358 551 1.3E-159 T 16-09-2016 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 Gene3D G3DSA:3.40.1770.10 8 139 1.3E-159 T 16-09-2016 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 PANTHER PTHR12216 1 553 0.0 T 16-09-2016 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 ProSitePatterns PS01233 Urocanase signature. 440 455 - T 16-09-2016 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 TIGRFAM TIGR01228 hutU: urocanate hydratase 9 551 4.5E-285 T 16-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 Gene3D G3DSA:3.40.50.10730 141 347 1.1E-91 T 16-09-2016 BER92_RS08510 af5e66ed017422e389035d062d1c656e 573 SUPERFAMILY SSF111326 4 552 4.05E-258 T 16-09-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS15805 d9200bdfdc637d63b96d2ce0ccceb671 402 SMART SM00825 Beta-ketoacyl synthase 4 402 8.0E-12 T 16-09-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER92_RS15805 d9200bdfdc637d63b96d2ce0ccceb671 402 SUPERFAMILY SSF53901 213 400 7.4E-58 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS15805 d9200bdfdc637d63b96d2ce0ccceb671 402 PANTHER PTHR11712 1 399 1.7E-156 T 16-09-2016 BER92_RS15805 d9200bdfdc637d63b96d2ce0ccceb671 402 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 359 3.5E-24 T 16-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal BER92_RS15805 d9200bdfdc637d63b96d2ce0ccceb671 402 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 16-09-2016 IPR018201 Beta-ketoacyl synthase, active site BER92_RS15805 d9200bdfdc637d63b96d2ce0ccceb671 402 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 1.8E-46 T 16-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal BER92_RS15805 d9200bdfdc637d63b96d2ce0ccceb671 402 Gene3D G3DSA:3.40.47.10 261 401 3.6E-45 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS15805 d9200bdfdc637d63b96d2ce0ccceb671 402 Gene3D G3DSA:3.40.47.10 6 257 1.7E-61 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS15805 d9200bdfdc637d63b96d2ce0ccceb671 402 SUPERFAMILY SSF53901 1 251 1.04E-63 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS04150 a2b0880078ffddd9b33847e3f9fd5402 239 PANTHER PTHR11735 1 135 3.0E-48 T 16-09-2016 BER92_RS04150 a2b0880078ffddd9b33847e3f9fd5402 239 Gene3D G3DSA:3.30.420.40 1 130 1.7E-40 T 16-09-2016 BER92_RS04150 a2b0880078ffddd9b33847e3f9fd5402 239 SUPERFAMILY SSF53067 1 101 1.08E-27 T 16-09-2016 BER92_RS04150 a2b0880078ffddd9b33847e3f9fd5402 239 Pfam PF00814 Glycoprotease family 28 220 4.5E-29 T 16-09-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 BER92_RS04150 a2b0880078ffddd9b33847e3f9fd5402 239 PANTHER PTHR11735:SF11 1 135 3.0E-48 T 16-09-2016 BER92_RS04150 a2b0880078ffddd9b33847e3f9fd5402 239 SUPERFAMILY SSF53067 106 214 3.5E-20 T 16-09-2016 BER92_RS04150 a2b0880078ffddd9b33847e3f9fd5402 239 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 216 5.9E-56 T 16-09-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 BER92_RS16735 12c783f552548cca6b7aa6ad24c0ffcb 483 PANTHER PTHR34219 16 234 1.8E-183 T 16-09-2016 BER92_RS16735 12c783f552548cca6b7aa6ad24c0ffcb 483 PANTHER PTHR34219:SF2 16 234 1.8E-183 T 16-09-2016 BER92_RS16735 12c783f552548cca6b7aa6ad24c0ffcb 483 PANTHER PTHR34219:SF2 284 482 1.8E-183 T 16-09-2016 BER92_RS16735 12c783f552548cca6b7aa6ad24c0ffcb 483 Pfam PF03929 PepSY-associated TM region 26 427 1.0E-56 T 16-09-2016 IPR005625 PepSY-associated TM protein BER92_RS16735 12c783f552548cca6b7aa6ad24c0ffcb 483 PANTHER PTHR34219 284 482 1.8E-183 T 16-09-2016 BER92_RS07980 4f920ae50d83299a415e8c1786e4e046 302 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 24 300 1.0E-48 T 16-09-2016 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 BER92_RS07980 4f920ae50d83299a415e8c1786e4e046 302 Pfam PF08543 Phosphomethylpyrimidine kinase 107 276 5.6E-17 T 16-09-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 BER92_RS07980 4f920ae50d83299a415e8c1786e4e046 302 SUPERFAMILY SSF53613 25 282 1.56E-54 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS07980 4f920ae50d83299a415e8c1786e4e046 302 PANTHER PTHR10534 12 279 1.2E-147 T 16-09-2016 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 BER92_RS07980 4f920ae50d83299a415e8c1786e4e046 302 Gene3D G3DSA:3.40.1190.20 24 284 6.7E-62 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS07980 4f920ae50d83299a415e8c1786e4e046 302 PANTHER PTHR10534:SF6 12 279 1.2E-147 T 16-09-2016 BER92_RS04545 10ddeb80c177d7dbc9068553abeae635 294 PANTHER PTHR11783:SF15 146 276 4.4E-53 T 16-09-2016 BER92_RS04545 10ddeb80c177d7dbc9068553abeae635 294 Gene3D G3DSA:3.40.50.300 19 285 2.5E-59 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04545 10ddeb80c177d7dbc9068553abeae635 294 Pfam PF00685 Sulfotransferase domain 27 277 2.8E-40 T 16-09-2016 IPR000863 Sulfotransferase domain GO:0008146 BER92_RS04545 10ddeb80c177d7dbc9068553abeae635 294 PANTHER PTHR11783 146 276 4.4E-53 T 16-09-2016 BER92_RS04545 10ddeb80c177d7dbc9068553abeae635 294 SUPERFAMILY SSF52540 19 285 3.57E-59 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04545 10ddeb80c177d7dbc9068553abeae635 294 PANTHER PTHR11783:SF15 22 127 4.4E-53 T 16-09-2016 BER92_RS04545 10ddeb80c177d7dbc9068553abeae635 294 PANTHER PTHR11783 22 127 4.4E-53 T 16-09-2016 BER92_RS18235 79ceaf65d6297348488de840d36322a8 148 SUPERFAMILY SSF89095 1 146 6.28E-43 T 16-09-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 BER92_RS18235 79ceaf65d6297348488de840d36322a8 148 Gene3D G3DSA:1.10.10.410 91 147 5.1E-22 T 16-09-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal BER92_RS18235 79ceaf65d6297348488de840d36322a8 148 Gene3D G3DSA:1.10.1510.10 1 90 3.4E-34 T 16-09-2016 BER92_RS18235 79ceaf65d6297348488de840d36322a8 148 PANTHER PTHR28055:SF1 1 148 4.4E-52 T 16-09-2016 BER92_RS18235 79ceaf65d6297348488de840d36322a8 148 Pfam PF09424 Yqey-like protein 4 146 3.1E-54 T 16-09-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial BER92_RS18235 79ceaf65d6297348488de840d36322a8 148 PANTHER PTHR28055 1 148 4.4E-52 T 16-09-2016 BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 SUPERFAMILY SSF50249 11 86 4.16E-31 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 Pfam PF00366 Ribosomal protein S17 15 82 2.0E-32 T 16-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 11 81 1.0E-34 T 16-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 Gene3D G3DSA:2.40.50.140 11 86 3.6E-33 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 PRINTS PR00973 Ribosomal protein S17 family signature 29 52 3.1E-11 T 16-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 PRINTS PR00973 Ribosomal protein S17 family signature 61 71 3.1E-11 T 16-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 PRINTS PR00973 Ribosomal protein S17 family signature 71 78 3.1E-11 T 16-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 11 81 1.1E-34 T 16-09-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 PANTHER PTHR10744 11 86 4.0E-36 T 16-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS05210 30e4ddee34b793db7ffbea34efe68f06 89 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 8 86 24.188 T 16-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS07915 067176b6ad1014a22c5f523d2a7e0ee8 510 SUPERFAMILY SSF56349 132 188 8.54E-34 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS07915 067176b6ad1014a22c5f523d2a7e0ee8 510 SUPERFAMILY SSF56349 218 437 8.54E-34 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS07915 067176b6ad1014a22c5f523d2a7e0ee8 510 PANTHER PTHR30349:SF20 163 190 2.6E-12 T 16-09-2016 BER92_RS07915 067176b6ad1014a22c5f523d2a7e0ee8 510 PANTHER PTHR30349:SF20 219 437 2.6E-12 T 16-09-2016 BER92_RS07915 067176b6ad1014a22c5f523d2a7e0ee8 510 PANTHER PTHR30349 163 190 2.6E-12 T 16-09-2016 BER92_RS07915 067176b6ad1014a22c5f523d2a7e0ee8 510 PANTHER PTHR30349 219 437 2.6E-12 T 16-09-2016 BER92_RS07915 067176b6ad1014a22c5f523d2a7e0ee8 510 Pfam PF00589 Phage integrase family 288 437 1.5E-13 T 16-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS07915 067176b6ad1014a22c5f523d2a7e0ee8 510 Gene3D G3DSA:1.10.443.10 266 438 1.3E-18 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS16035 721557087c32e4561595ac1133db53d4 355 PANTHER PTHR18895:SF70 175 340 2.5E-48 T 16-09-2016 BER92_RS16035 721557087c32e4561595ac1133db53d4 355 PANTHER PTHR18895 175 340 2.5E-48 T 16-09-2016 BER92_RS16035 721557087c32e4561595ac1133db53d4 355 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 277 283 - T 16-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BER92_RS16035 721557087c32e4561595ac1133db53d4 355 Pfam PF05175 Methyltransferase small domain 177 345 4.0E-50 T 16-09-2016 IPR007848 Methyltransferase small domain GO:0008168 BER92_RS16035 721557087c32e4561595ac1133db53d4 355 SUPERFAMILY SSF53335 166 345 1.61E-22 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS16035 721557087c32e4561595ac1133db53d4 355 Gene3D G3DSA:3.40.50.150 173 343 4.2E-21 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS09045 471efecda58c7e384cac95031b6495cc 98 PANTHER PTHR16254 13 96 1.5E-37 T 16-09-2016 BER92_RS09045 471efecda58c7e384cac95031b6495cc 98 Pfam PF00999 Sodium/hydrogen exchanger family 24 95 2.8E-9 T 16-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BER92_RS09045 471efecda58c7e384cac95031b6495cc 98 PANTHER PTHR16254:SF22 13 96 1.5E-37 T 16-09-2016 BER92_RS05700 dcb5662db6376c4b0141d3229751ec1d 131 SUPERFAMILY SSF51230 4 128 7.07E-44 T 16-09-2016 IPR011053 Single hybrid motif BER92_RS05700 dcb5662db6376c4b0141d3229751ec1d 131 Pfam PF01597 Glycine cleavage H-protein 8 128 7.8E-44 T 16-09-2016 IPR002930 Glycine cleavage system H-protein BER92_RS05700 dcb5662db6376c4b0141d3229751ec1d 131 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 129 2.2E-49 T 16-09-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 BER92_RS05700 dcb5662db6376c4b0141d3229751ec1d 131 PANTHER PTHR11715:SF12 1 131 5.7E-67 T 16-09-2016 BER92_RS05700 dcb5662db6376c4b0141d3229751ec1d 131 Gene3D G3DSA:2.40.50.100 7 128 7.7E-48 T 16-09-2016 BER92_RS05700 dcb5662db6376c4b0141d3229751ec1d 131 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 30.615 T 16-09-2016 IPR002930 Glycine cleavage system H-protein BER92_RS05700 dcb5662db6376c4b0141d3229751ec1d 131 PANTHER PTHR11715 1 131 5.7E-67 T 16-09-2016 IPR002930 Glycine cleavage system H-protein BER92_RS09995 4fb4e4b446c14c9421bc248ea2857175 169 PANTHER PTHR30565:SF1 1 169 8.6E-105 T 16-09-2016 BER92_RS09995 4fb4e4b446c14c9421bc248ea2857175 169 SUPERFAMILY SSF47240 1 156 1.56E-45 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS09995 4fb4e4b446c14c9421bc248ea2857175 169 Gene3D G3DSA:1.20.1260.10 1 160 1.7E-49 T 16-09-2016 IPR012347 Ferritin-related BER92_RS09995 4fb4e4b446c14c9421bc248ea2857175 169 Pfam PF05974 Domain of unknown function (DUF892) 4 156 4.6E-48 T 16-09-2016 IPR010287 Domain of unknown function DUF892 BER92_RS09995 4fb4e4b446c14c9421bc248ea2857175 169 PANTHER PTHR30565 1 169 8.6E-105 T 16-09-2016 BER92_RS01550 e0059d88e1de2e47ccc93912f15d7b48 215 PANTHER PTHR30055:SF39 7 210 1.6E-80 T 16-09-2016 BER92_RS01550 e0059d88e1de2e47ccc93912f15d7b48 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 71 5.0E-8 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS01550 e0059d88e1de2e47ccc93912f15d7b48 215 SUPERFAMILY SSF46689 20 79 1.61E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS01550 e0059d88e1de2e47ccc93912f15d7b48 215 PANTHER PTHR30055 7 210 1.6E-80 T 16-09-2016 BER92_RS01550 e0059d88e1de2e47ccc93912f15d7b48 215 Gene3D G3DSA:1.10.357.10 15 207 3.1E-25 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS09555 5a0eca15a8f5fb628cae84daeee25c45 355 SUPERFAMILY SSF50341 217 355 2.22E-30 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS09555 5a0eca15a8f5fb628cae84daeee25c45 355 PANTHER PTHR22617 202 355 1.4E-38 T 16-09-2016 BER92_RS09555 5a0eca15a8f5fb628cae84daeee25c45 355 Pfam PF01584 CheW-like domain 222 354 6.6E-30 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS09555 5a0eca15a8f5fb628cae84daeee25c45 355 SMART SM00260 216 354 1.2E-22 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS09555 5a0eca15a8f5fb628cae84daeee25c45 355 Gene3D G3DSA:2.30.30.40 296 348 4.3E-6 T 16-09-2016 BER92_RS09555 5a0eca15a8f5fb628cae84daeee25c45 355 PANTHER PTHR22617:SF5 202 355 1.4E-38 T 16-09-2016 BER92_RS09555 5a0eca15a8f5fb628cae84daeee25c45 355 Gene3D G3DSA:2.40.50.180 259 295 4.5E-8 T 16-09-2016 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 PANTHER PTHR32089 49 244 1.7E-152 T 16-09-2016 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 Gene3D G3DSA:1.10.287.950 459 663 7.8E-63 T 16-09-2016 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 SUPERFAMILY SSF58104 411 693 2.88E-73 T 16-09-2016 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 SMART SM00283 444 691 1.3E-92 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 465 494 2.8E-60 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 619 648 2.8E-60 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 189 214 2.8E-60 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 542 569 2.8E-60 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 571 600 2.8E-60 T 16-09-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 SMART SM00304 391 443 9.9 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 SMART SM00304 210 262 2.1E-5 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 PANTHER PTHR32089:SF63 49 244 1.7E-152 T 16-09-2016 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 PANTHER PTHR32089:SF63 426 694 1.7E-152 T 16-09-2016 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 181 4.1E-11 T 16-09-2016 IPR024478 4HB MCP domain BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 Pfam PF00672 HAMP domain 191 258 2.6E-7 T 16-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 496 690 6.9E-63 T 16-09-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 PANTHER PTHR32089 426 694 1.7E-152 T 16-09-2016 BER92_RS14585 40d7a86c43fb7914dd225aba580425e1 732 SUPERFAMILY SSF158472 212 261 6.02E-5 T 16-09-2016 BER92_RS16650 074845dceffcafbf51b606962a2da2ef 329 Pfam PF01867 CRISPR associated protein Cas1 25 293 5.8E-26 T 16-09-2016 IPR002729 CRISPR-associated protein Cas1 BER92_RS16650 074845dceffcafbf51b606962a2da2ef 329 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 11 328 9.925 T 16-09-2016 IPR002729 CRISPR-associated protein Cas1 BER92_RS16650 074845dceffcafbf51b606962a2da2ef 329 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 19 294 7.2E-62 T 16-09-2016 IPR002729 CRISPR-associated protein Cas1 BER92_RS16650 074845dceffcafbf51b606962a2da2ef 329 TIGRFAM TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST 12 316 1.1E-154 T 16-09-2016 IPR019857 CRISPR-associated protein Cas1, YPEST subtype BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 SUPERFAMILY SSF49493 205 287 1.28E-15 T 16-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 Pfam PF01556 DnaJ C terminal domain 143 276 2.8E-26 T 16-09-2016 IPR002939 Chaperone DnaJ, C-terminal BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 16-09-2016 IPR018253 DnaJ domain, conserved site BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 Gene3D G3DSA:2.60.260.20 202 276 3.4E-14 T 16-09-2016 BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 SMART SM00271 4 61 7.4E-27 T 16-09-2016 IPR001623 DnaJ domain BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 PRINTS PR00625 DnaJ domain signature 25 40 3.1E-22 T 16-09-2016 IPR001623 DnaJ domain BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 PRINTS PR00625 DnaJ domain signature 7 25 3.1E-22 T 16-09-2016 IPR001623 DnaJ domain BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 PRINTS PR00625 DnaJ domain signature 61 80 3.1E-22 T 16-09-2016 IPR001623 DnaJ domain BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 PRINTS PR00625 DnaJ domain signature 41 61 3.1E-22 T 16-09-2016 IPR001623 DnaJ domain BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 PANTHER PTHR24078:SF190 4 293 1.8E-59 T 16-09-2016 BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 Gene3D G3DSA:2.60.260.20 135 188 1.2E-9 T 16-09-2016 BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 Gene3D G3DSA:1.10.287.110 2 98 2.5E-31 T 16-09-2016 IPR001623 DnaJ domain BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 SUPERFAMILY SSF49493 139 212 6.93E-11 T 16-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 Pfam PF00226 DnaJ domain 5 66 3.0E-24 T 16-09-2016 IPR001623 DnaJ domain BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 PANTHER PTHR24078 4 293 1.8E-59 T 16-09-2016 BER92_RS13865 2a17f6ed487da3d81857dd96b3f98492 298 SUPERFAMILY SSF46565 1 106 1.16E-30 T 16-09-2016 IPR001623 DnaJ domain BER92_RS09895 99a09be89474b1140f4c98cd5b1b44df 359 Pfam PF15602 Immunity protein 71 11 165 4.4E-44 T 16-09-2016 IPR028950 Immunity protein 71 BER92_RS09895 99a09be89474b1140f4c98cd5b1b44df 359 Pfam PF15584 Immunity protein 72 196 289 4.6E-17 T 16-09-2016 IPR028966 Immunity protein 72 BER92_RS10770 5d2e15a927260b04e5bed80cc92e4611 520 PANTHER PTHR11819 4 493 1.0E-180 T 16-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 BER92_RS10770 5d2e15a927260b04e5bed80cc92e4611 520 Pfam PF00474 Sodium:solute symporter family 39 439 5.2E-71 T 16-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 BER92_RS10770 5d2e15a927260b04e5bed80cc92e4611 520 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 39 439 1.4E-106 T 16-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 BER92_RS10770 5d2e15a927260b04e5bed80cc92e4611 520 PANTHER PTHR11819:SF7 4 493 1.0E-180 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 Pfam PF00361 Proton-conducting membrane transporter 139 422 2.6E-86 T 16-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PANTHER PTHR22773 576 675 8.4E-267 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PANTHER PTHR22773 512 548 8.4E-267 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 70 127 2.5E-24 T 16-09-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal BER92_RS07295 48acd97293c075e392b177e156521b90 726 PANTHER PTHR22773 1 473 8.4E-267 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PANTHER PTHR22773:SF50 576 675 8.4E-267 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PANTHER PTHR22773:SF50 512 548 8.4E-267 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 9 721 2.4E-234 T 16-09-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 90 110 3.1E-15 T 16-09-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 279 301 3.1E-15 T 16-09-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 524 545 3.1E-15 T 16-09-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 64 88 3.1E-15 T 16-09-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 437 459 3.1E-15 T 16-09-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 239 260 5.3E-65 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 163 184 5.3E-65 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 261 287 5.3E-65 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 438 457 5.3E-65 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 88 113 5.3E-65 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 116 136 5.3E-65 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 329 341 5.3E-65 T 16-09-2016 BER92_RS07295 48acd97293c075e392b177e156521b90 726 PANTHER PTHR22773:SF50 1 473 8.4E-267 T 16-09-2016 BER92_RS00900 dabb970e5c80dc74fc51ea7831d54fb7 460 Pfam PF01609 Transposase DDE domain 303 440 5.9E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS00900 dabb970e5c80dc74fc51ea7831d54fb7 460 PANTHER PTHR33803:SF1 1 441 0.0 T 16-09-2016 BER92_RS00900 dabb970e5c80dc74fc51ea7831d54fb7 460 Pfam PF05598 Transposase domain (DUF772) 78 152 8.9E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS00900 dabb970e5c80dc74fc51ea7831d54fb7 460 PANTHER PTHR33803 1 441 0.0 T 16-09-2016 BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 SUPERFAMILY SSF46785 159 227 8.29E-12 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 PANTHER PTHR24567:SF27 19 227 3.0E-125 T 16-09-2016 BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 SMART SM00419 180 228 3.1E-11 T 16-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 Gene3D G3DSA:2.60.120.10 21 163 4.6E-29 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 SMART SM00100 18 137 3.2E-22 T 16-09-2016 IPR000595 Cyclic nucleotide-binding domain BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 186 202 5.4E-6 T 16-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 202 217 5.4E-6 T 16-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 SUPERFAMILY SSF51206 24 155 2.09E-24 T 16-09-2016 IPR018490 Cyclic nucleotide-binding-like BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 Pfam PF00325 Bacterial regulatory proteins, crp family 186 217 5.1E-13 T 16-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 Pfam PF00027 Cyclic nucleotide-binding domain 36 124 3.6E-19 T 16-09-2016 IPR000595 Cyclic nucleotide-binding domain BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 PANTHER PTHR24567 19 227 3.0E-125 T 16-09-2016 BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 ProSitePatterns PS00042 Crp-type HTH domain signature. 188 211 - T 16-09-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 BER92_RS17960 58fb243f52db8cc6161163a653dd7802 230 Gene3D G3DSA:1.10.10.10 164 227 2.1E-18 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS17395 255ba68218a09987941f1cfc25ce314d 333 PANTHER PTHR30201 38 331 1.1E-86 T 16-09-2016 BER92_RS17395 255ba68218a09987941f1cfc25ce314d 333 Hamap MF_01883 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [mdcB]. 1 333 111.897 T 16-09-2016 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 BER92_RS17395 255ba68218a09987941f1cfc25ce314d 333 TIGRFAM TIGR03132 malonate_mdcB: triphosphoribosyl-dephospho-CoA synthase MdcB 65 330 1.0E-100 T 16-09-2016 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 BER92_RS17395 255ba68218a09987941f1cfc25ce314d 333 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 70 328 6.0E-75 T 16-09-2016 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 Gene3D G3DSA:2.30.40.10 347 395 5.0E-7 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 Pfam PF01979 Amidohydrolase family 62 379 1.4E-14 T 16-09-2016 IPR006680 Amidohydrolase-related GO:0016787 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 SUPERFAMILY SSF51556 64 361 2.96E-83 T 16-09-2016 IPR032466 Metal-dependent hydrolase BER92_RS08525 c9105d782110680e783696ad4163f40d 401 TIGRFAM TIGR01224 hutI: imidazolonepropionase 26 399 2.8E-137 T 16-09-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 SUPERFAMILY SSF51338 363 400 6.17E-30 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 SUPERFAMILY SSF51338 2 64 6.17E-30 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 PANTHER PTHR22642:SF1 49 397 1.3E-142 T 16-09-2016 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 Gene3D G3DSA:3.20.20.140 78 346 4.4E-40 T 16-09-2016 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 Gene3D G3DSA:2.30.40.10 4 77 6.4E-11 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 Hamap MF_00372 Imidazolonepropionase [hutI]. 4 401 41.077 T 16-09-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 BER92_RS08525 c9105d782110680e783696ad4163f40d 401 PANTHER PTHR22642 49 397 1.3E-142 T 16-09-2016 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 PANTHER PTHR33910:SF1 11 136 2.0E-21 T 16-09-2016 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 Gene3D G3DSA:1.20.5.1030 79 134 8.3E-23 T 16-09-2016 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 81 133 4.2E-19 T 16-09-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 81 134 1.3E-20 T 16-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 82 110 - T 16-09-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 PANTHER PTHR33910 11 136 2.0E-21 T 16-09-2016 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 PRINTS PR01650 Bacterial translocase SecE signature 76 96 6.6E-15 T 16-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 PRINTS PR01650 Bacterial translocase SecE signature 100 120 6.6E-15 T 16-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 PRINTS PR01650 Bacterial translocase SecE signature 55 76 6.6E-15 T 16-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 BER92_RS05100 2e59648611a8fb4bccf1c64f1e5c229b 136 Hamap MF_00422 Protein translocase subunit SecE [secE]. 77 132 12.147 T 16-09-2016 IPR022943 Preprotein translocase subunit SecE BER92_RS10930 b6687ce07700942e149b858dd512708b 210 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 126 139 - T 16-09-2016 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BER92_RS10930 b6687ce07700942e149b858dd512708b 210 SUPERFAMILY SSF51569 7 207 2.56E-52 T 16-09-2016 BER92_RS10930 b6687ce07700942e149b858dd512708b 210 PANTHER PTHR30246:SF1 1 208 8.2E-74 T 16-09-2016 BER92_RS10930 b6687ce07700942e149b858dd512708b 210 PANTHER PTHR30246 1 208 8.2E-74 T 16-09-2016 BER92_RS10930 b6687ce07700942e149b858dd512708b 210 Gene3D G3DSA:3.20.20.70 12 208 4.4E-62 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS10930 b6687ce07700942e149b858dd512708b 210 Pfam PF01081 KDPG and KHG aldolase 13 189 6.6E-23 T 16-09-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BER92_RS03445 6849e656ce837a37915dbba558797ff2 714 SUPERFAMILY SSF48317 244 444 1.23E-26 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS03445 6849e656ce837a37915dbba558797ff2 714 Gene3D G3DSA:1.20.144.10 266 437 6.0E-15 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS03445 6849e656ce837a37915dbba558797ff2 714 PANTHER PTHR30353:SF5 356 423 5.7E-142 T 16-09-2016 BER92_RS03445 6849e656ce837a37915dbba558797ff2 714 PANTHER PTHR30353:SF5 1 309 5.7E-142 T 16-09-2016 BER92_RS03445 6849e656ce837a37915dbba558797ff2 714 Pfam PF01569 PAP2 superfamily 356 435 8.4E-11 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS03445 6849e656ce837a37915dbba558797ff2 714 Pfam PF14067 LssY C-terminus 498 607 5.2E-9 T 16-09-2016 IPR025902 LssY-like C-terminal domain BER92_RS03445 6849e656ce837a37915dbba558797ff2 714 Pfam PF09335 SNARE associated Golgi protein 39 162 2.0E-19 T 16-09-2016 IPR032816 SNARE associated Golgi protein BER92_RS03445 6849e656ce837a37915dbba558797ff2 714 PANTHER PTHR30353 1 309 5.7E-142 T 16-09-2016 IPR032818 DedA family BER92_RS03445 6849e656ce837a37915dbba558797ff2 714 PANTHER PTHR30353 356 423 5.7E-142 T 16-09-2016 IPR032818 DedA family BER92_RS04295 7a9d718e96bc607cafc5b5e2d8b3e6d3 141 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 137 1.0E-32 T 16-09-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 BER92_RS04295 7a9d718e96bc607cafc5b5e2d8b3e6d3 141 SUPERFAMILY SSF102400 1 140 5.89E-36 T 16-09-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 BER92_RS04295 7a9d718e96bc607cafc5b5e2d8b3e6d3 141 PANTHER PTHR38767 2 141 2.2E-60 T 16-09-2016 BER92_RS04295 7a9d718e96bc607cafc5b5e2d8b3e6d3 141 Gene3D G3DSA:3.40.50.10110 1 140 1.7E-36 T 16-09-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 BER92_RS17400 eaf493c7625724615abb75e01c46c4fa 213 Pfam PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG 4 203 9.9E-61 T 16-09-2016 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 BER92_RS17400 eaf493c7625724615abb75e01c46c4fa 213 TIGRFAM TIGR03135 malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase 4 203 3.8E-64 T 16-09-2016 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 BER92_RS17400 eaf493c7625724615abb75e01c46c4fa 213 Hamap MF_00650 Phosphoribosyl-dephospho-CoA transferase [mdcG]. 1 209 32.246 T 16-09-2016 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 BER92_RS12990 b4357f3f7d9a5d0f7e32412056d93287 80 PANTHER PTHR37304:SF1 1 80 2.4E-29 T 16-09-2016 BER92_RS12990 b4357f3f7d9a5d0f7e32412056d93287 80 Pfam PF04070 Domain of unknown function (DUF378) 2 61 4.1E-26 T 16-09-2016 IPR007211 Protein of unknown function DUF378 BER92_RS12990 b4357f3f7d9a5d0f7e32412056d93287 80 PANTHER PTHR37304 1 80 2.4E-29 T 16-09-2016 BER92_RS04110 a3106c58dcac14ba693ab6bdcc695f89 250 PANTHER PTHR40279 4 249 1.6E-158 T 16-09-2016 BER92_RS04110 a3106c58dcac14ba693ab6bdcc695f89 250 SUPERFAMILY SSF48613 2 230 4.2E-61 T 16-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 BER92_RS04110 a3106c58dcac14ba693ab6bdcc695f89 250 Pfam PF03070 TENA/THI-4/PQQC family 12 222 2.3E-58 T 16-09-2016 IPR004305 Thiaminase-2/PQQC BER92_RS04110 a3106c58dcac14ba693ab6bdcc695f89 250 Gene3D G3DSA:1.20.910.10 3 241 6.0E-99 T 16-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 BER92_RS04110 a3106c58dcac14ba693ab6bdcc695f89 250 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 250 117.183 T 16-09-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 BER92_RS04110 a3106c58dcac14ba693ab6bdcc695f89 250 PANTHER PTHR40279:SF2 4 249 1.6E-158 T 16-09-2016 BER92_RS04110 a3106c58dcac14ba693ab6bdcc695f89 250 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 5 242 4.1E-126 T 16-09-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 BER92_RS18495 2c619377d88a696e444640fed2c30277 334 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 16-09-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 BER92_RS18495 2c619377d88a696e444640fed2c30277 334 PANTHER PTHR11082:SF29 4 327 1.3E-137 T 16-09-2016 BER92_RS18495 2c619377d88a696e444640fed2c30277 334 PANTHER PTHR11082 4 327 1.3E-137 T 16-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BER92_RS18495 2c619377d88a696e444640fed2c30277 334 Gene3D G3DSA:3.20.20.70 13 254 2.9E-73 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS18495 2c619377d88a696e444640fed2c30277 334 Pfam PF01207 Dihydrouridine synthase (Dus) 16 321 6.8E-78 T 16-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BER92_RS18495 2c619377d88a696e444640fed2c30277 334 PIRSF PIRSF006621 4 328 6.5E-77 T 16-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BER92_RS18495 2c619377d88a696e444640fed2c30277 334 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 8 327 48.632 T 16-09-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 BER92_RS18495 2c619377d88a696e444640fed2c30277 334 SUPERFAMILY SSF51395 13 323 5.64E-70 T 16-09-2016 BER92_RS17425 8895ed8ca56f3eccf182bea6e86ab84d 262 Gene3D G3DSA:3.40.50.80 135 260 4.2E-37 T 16-09-2016 BER92_RS17425 8895ed8ca56f3eccf182bea6e86ab84d 262 PANTHER PTHR30157:SF1 1 260 5.2E-113 T 16-09-2016 BER92_RS17425 8895ed8ca56f3eccf182bea6e86ab84d 262 Pfam PF04954 Siderophore-interacting protein 140 257 1.6E-33 T 16-09-2016 IPR007037 Siderophore-interacting protein BER92_RS17425 8895ed8ca56f3eccf182bea6e86ab84d 262 PANTHER PTHR30157 1 260 5.2E-113 T 16-09-2016 BER92_RS17425 8895ed8ca56f3eccf182bea6e86ab84d 262 SUPERFAMILY SSF63380 8 137 1.97E-15 T 16-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 BER92_RS17425 8895ed8ca56f3eccf182bea6e86ab84d 262 Gene3D G3DSA:2.40.30.10 10 131 4.1E-35 T 16-09-2016 BER92_RS17425 8895ed8ca56f3eccf182bea6e86ab84d 262 Pfam PF08021 Siderophore-interacting FAD-binding domain 20 132 5.0E-37 T 16-09-2016 IPR013113 FAD-binding 9, siderophore-interacting BER92_RS00790 6a31e1d6569be3bed28097aebad97ae3 239 Pfam PF05944 Phage small terminase subunit 39 167 3.5E-50 T 16-09-2016 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 BER92_RS13650 87e6e432be232aed5f74e599504ba6f4 182 Gene3D G3DSA:3.40.50.1000 12 177 5.0E-40 T 16-09-2016 IPR023214 HAD-like domain BER92_RS13650 87e6e432be232aed5f74e599504ba6f4 182 PIRSF PIRSF006118 7 181 5.1E-67 T 16-09-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 BER92_RS13650 87e6e432be232aed5f74e599504ba6f4 182 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 20 171 8.9E-38 T 16-09-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 BER92_RS13650 87e6e432be232aed5f74e599504ba6f4 182 PANTHER PTHR21485 12 176 3.9E-45 T 16-09-2016 BER92_RS13650 87e6e432be232aed5f74e599504ba6f4 182 SUPERFAMILY SSF56784 18 176 1.84E-39 T 16-09-2016 IPR023214 HAD-like domain BER92_RS13650 87e6e432be232aed5f74e599504ba6f4 182 Pfam PF08282 haloacid dehalogenase-like hydrolase 94 152 5.1E-7 T 16-09-2016 IPR023214 HAD-like domain BER92_RS12770 9676a47e4605f5adb9dc180b1372c270 244 PANTHER PTHR34387 1 244 1.9E-62 T 16-09-2016 BER92_RS12770 9676a47e4605f5adb9dc180b1372c270 244 Pfam PF04402 Protein of unknown function (DUF541) 40 240 6.9E-54 T 16-09-2016 IPR007497 Protein of unknown function DUF541 BER92_RS12770 9676a47e4605f5adb9dc180b1372c270 244 PANTHER PTHR34387:SF1 1 244 1.9E-62 T 16-09-2016 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 PANTHER PTHR21581:SF3 39 400 3.4E-118 T 16-09-2016 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 47 273 2.0E-77 T 16-09-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 293 383 1.7E-27 T 16-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 SMART SM00936 293 383 2.0E-33 T 16-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 Gene3D G3DSA:2.60.410.10 293 383 1.3E-29 T 16-09-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 SUPERFAMILY SSF69189 293 385 5.69E-26 T 16-09-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 PANTHER PTHR21581 39 400 3.4E-118 T 16-09-2016 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 SUPERFAMILY SSF56601 1 293 1.59E-79 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 160 173 6.5E-16 T 16-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 75 86 6.5E-16 T 16-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 133 150 6.5E-16 T 16-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BER92_RS02785 401c33d8f7a75c2630bc531d5ac1a945 400 Gene3D G3DSA:3.40.710.10 39 292 1.0E-92 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS05850 dab20b11386afa5b7378631669597a5f 69 PANTHER PTHR11808 23 60 1.6E-12 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS05850 dab20b11386afa5b7378631669597a5f 69 PANTHER PTHR11808:SF14 23 60 1.6E-12 T 16-09-2016 BER92_RS05850 dab20b11386afa5b7378631669597a5f 69 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 19 60 4.6E-10 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS05850 dab20b11386afa5b7378631669597a5f 69 SUPERFAMILY SSF53383 19 62 1.85E-8 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS05850 dab20b11386afa5b7378631669597a5f 69 Gene3D G3DSA:3.90.1150.10 20 60 4.9E-11 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS18060 21c54ddb1c9865f775db89f057b2e0d9 279 SUPERFAMILY SSF56925 27 44 4.71E-16 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS18060 21c54ddb1c9865f775db89f057b2e0d9 279 SUPERFAMILY SSF56925 263 279 4.71E-16 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS18060 21c54ddb1c9865f775db89f057b2e0d9 279 SUPERFAMILY SSF56925 91 236 4.71E-16 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS18060 21c54ddb1c9865f775db89f057b2e0d9 279 PANTHER PTHR34001 80 279 5.3E-47 T 16-09-2016 BER92_RS18060 21c54ddb1c9865f775db89f057b2e0d9 279 PANTHER PTHR34001 1 52 5.3E-47 T 16-09-2016 BER92_RS18060 21c54ddb1c9865f775db89f057b2e0d9 279 Pfam PF13505 Outer membrane protein beta-barrel domain 9 279 2.2E-12 T 16-09-2016 IPR027385 Outer membrane protein beta-barrel BER92_RS18060 21c54ddb1c9865f775db89f057b2e0d9 279 Gene3D G3DSA:2.40.160.20 12 49 1.6E-19 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS18060 21c54ddb1c9865f775db89f057b2e0d9 279 Gene3D G3DSA:2.40.160.20 86 279 1.6E-19 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS09370 1333a9729bff5aad4ff4fae998f3b13d 135 Pfam PF01850 PIN domain 5 129 1.2E-9 T 16-09-2016 IPR002716 PIN domain BER92_RS09370 1333a9729bff5aad4ff4fae998f3b13d 135 SUPERFAMILY SSF88723 5 128 1.05E-11 T 16-09-2016 IPR029060 PIN domain-like BER92_RS09370 1333a9729bff5aad4ff4fae998f3b13d 135 Gene3D G3DSA:3.40.50.1010 3 132 2.2E-7 T 16-09-2016 IPR029060 PIN domain-like BER92_RS04265 bd26b9c43a926d07137832a2da7a4ed9 136 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 2 102 2.7E-30 T 16-09-2016 IPR018683 Domain of unknown function DUF2169 BER92_RS07550 69ac541d016bb82aa9e113f02d4892ac 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 294 6.4E-18 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS07550 69ac541d016bb82aa9e113f02d4892ac 303 PANTHER PTHR30193 1 303 1.8E-134 T 16-09-2016 BER92_RS07550 69ac541d016bb82aa9e113f02d4892ac 303 SUPERFAMILY SSF161098 13 297 1.68E-56 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS07550 69ac541d016bb82aa9e113f02d4892ac 303 Gene3D G3DSA:1.10.3720.10 12 292 1.1E-53 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS07550 69ac541d016bb82aa9e113f02d4892ac 303 PANTHER PTHR30193:SF5 1 303 1.8E-134 T 16-09-2016 BER92_RS06875 9f1b3d9e34382e8cfbb76c3319cd81bb 328 Pfam PF01464 Transglycosylase SLT domain 202 299 9.7E-26 T 16-09-2016 IPR008258 Transglycosylase SLT domain 1 BER92_RS06875 9f1b3d9e34382e8cfbb76c3319cd81bb 328 PANTHER PTHR21666 181 321 1.5E-39 T 16-09-2016 BER92_RS06875 9f1b3d9e34382e8cfbb76c3319cd81bb 328 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 219 247 - T 16-09-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 BER92_RS06875 9f1b3d9e34382e8cfbb76c3319cd81bb 328 SUPERFAMILY SSF53955 193 322 1.36E-44 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS06875 9f1b3d9e34382e8cfbb76c3319cd81bb 328 Gene3D G3DSA:1.10.530.10 191 321 1.1E-44 T 16-09-2016 BER92_RS03720 66d7aa7d7e3bb2722d936b593808baca 105 Gene3D G3DSA:2.30.30.110 3 101 4.0E-31 T 16-09-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor BER92_RS03720 66d7aa7d7e3bb2722d936b593808baca 105 SUPERFAMILY SSF50118 4 101 1.29E-23 T 16-09-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor BER92_RS03720 66d7aa7d7e3bb2722d936b593808baca 105 ProDom PD012578 PLASMID TOXIN CCDB CYTOTOXIC LETB POST-SEGREGATION SYSTEM CCDB-LIKE GYRASE FUSED-CCDB 18 100 6.0E-4 T 16-09-2016 IPR002712 Toxin CcdB GO:0006276|GO:0008657 BER92_RS03720 66d7aa7d7e3bb2722d936b593808baca 105 Pfam PF01845 CcdB protein 4 101 2.8E-28 T 16-09-2016 IPR002712 Toxin CcdB GO:0006276|GO:0008657 BER92_RS14965 cc946f6229d9fc1b11f93eb36769fccf 265 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 140 263 1.1E-33 T 16-09-2016 IPR003709 Peptidase M15B GO:0006508|GO:0008233 BER92_RS14965 cc946f6229d9fc1b11f93eb36769fccf 265 PANTHER PTHR34385:SF1 58 262 4.9E-51 T 16-09-2016 BER92_RS14965 cc946f6229d9fc1b11f93eb36769fccf 265 PANTHER PTHR34385 58 262 4.9E-51 T 16-09-2016 BER92_RS14965 cc946f6229d9fc1b11f93eb36769fccf 265 SUPERFAMILY SSF55166 137 262 7.06E-22 T 16-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PANTHER PTHR30381:SF1 8 372 8.7E-218 T 16-09-2016 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 Hamap MF_00416 Flagellar P-ring protein [flgI]. 9 372 38.223 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 Pfam PF02119 Flagellar P-ring protein 28 371 8.9E-135 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PANTHER PTHR30381 8 372 8.7E-218 T 16-09-2016 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PRINTS PR01010 Flagellar P-ring protein signature 169 187 8.3E-77 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PRINTS PR01010 Flagellar P-ring protein signature 28 43 8.3E-77 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PRINTS PR01010 Flagellar P-ring protein signature 43 58 8.3E-77 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PRINTS PR01010 Flagellar P-ring protein signature 63 78 8.3E-77 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PRINTS PR01010 Flagellar P-ring protein signature 111 128 8.3E-77 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PRINTS PR01010 Flagellar P-ring protein signature 195 213 8.3E-77 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PRINTS PR01010 Flagellar P-ring protein signature 89 108 8.3E-77 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PRINTS PR01010 Flagellar P-ring protein signature 128 146 8.3E-77 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS10280 331cbb822bc1d00dd0aa2339ba28510a 372 PRINTS PR01010 Flagellar P-ring protein signature 259 271 8.3E-77 T 16-09-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BER92_RS17840 cc1cfd9da4bf0117ce9e186bcf769652 52 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 9.9E-16 T 16-09-2016 IPR009760 Protein of unknown function DUF1328 GO:0005886 BER92_RS17840 cc1cfd9da4bf0117ce9e186bcf769652 52 PIRSF PIRSF036466 1 52 2.4E-22 T 16-09-2016 IPR009760 Protein of unknown function DUF1328 GO:0005886 BER92_RS17840 cc1cfd9da4bf0117ce9e186bcf769652 52 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 51 20.278 T 16-09-2016 IPR009760 Protein of unknown function DUF1328 GO:0005886 BER92_RS17840 cc1cfd9da4bf0117ce9e186bcf769652 52 PANTHER PTHR37956 2 51 6.1E-18 T 16-09-2016 BER92_RS14990 51834361bdefda7354d932eeeba531e5 398 Pfam PF07730 Histidine kinase 199 261 4.6E-15 T 16-09-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BER92_RS14990 51834361bdefda7354d932eeeba531e5 398 PANTHER PTHR24421:SF15 109 397 3.1E-98 T 16-09-2016 BER92_RS14990 51834361bdefda7354d932eeeba531e5 398 Gene3D G3DSA:3.30.565.10 270 383 2.3E-6 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14990 51834361bdefda7354d932eeeba531e5 398 SUPERFAMILY SSF55874 277 383 1.83E-13 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14990 51834361bdefda7354d932eeeba531e5 398 PANTHER PTHR24421 109 397 3.1E-98 T 16-09-2016 BER92_RS15760 79ae681bd215d7f814d10f6022936977 160 SMART SM00065 31 160 0.0074 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS15760 79ae681bd215d7f814d10f6022936977 160 PANTHER PTHR21021 7 153 5.7E-54 T 16-09-2016 BER92_RS15760 79ae681bd215d7f814d10f6022936977 160 SUPERFAMILY SSF55781 13 159 4.32E-41 T 16-09-2016 IPR029016 GAF domain-like BER92_RS15760 79ae681bd215d7f814d10f6022936977 160 Pfam PF13185 GAF domain 51 159 3.0E-11 T 16-09-2016 IPR003018 GAF domain GO:0005515 BER92_RS15760 79ae681bd215d7f814d10f6022936977 160 Gene3D G3DSA:3.30.450.40 13 154 5.8E-49 T 16-09-2016 IPR029016 GAF domain-like BER92_RS15760 79ae681bd215d7f814d10f6022936977 160 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 98 115 - T 16-09-2016 IPR000614 Free Met sulfoxide reductase conserved site BER92_RS04870 27fdba773cd6fec52203324ac1769c9f 143 Pfam PF14760 Rnk N-terminus 11 51 6.5E-8 T 16-09-2016 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain BER92_RS04870 27fdba773cd6fec52203324ac1769c9f 143 PANTHER PTHR30437:SF5 12 141 4.9E-55 T 16-09-2016 BER92_RS04870 27fdba773cd6fec52203324ac1769c9f 143 Gene3D G3DSA:1.10.286.20 11 51 3.3E-8 T 16-09-2016 BER92_RS04870 27fdba773cd6fec52203324ac1769c9f 143 PANTHER PTHR30437 12 141 4.9E-55 T 16-09-2016 BER92_RS04870 27fdba773cd6fec52203324ac1769c9f 143 Gene3D G3DSA:3.10.50.30 53 143 1.0E-28 T 16-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BER92_RS04870 27fdba773cd6fec52203324ac1769c9f 143 SUPERFAMILY SSF54534 56 132 9.55E-18 T 16-09-2016 BER92_RS04870 27fdba773cd6fec52203324ac1769c9f 143 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 57 132 4.2E-20 T 16-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BER92_RS17415 965f715d8be819f31a78cc7f67922414 105 Hamap MF_00710 Malonate decarboxylase acyl carrier protein [mdcC]. 1 104 51.841 T 16-09-2016 IPR009662 Malonate decarboxylase delta subunit BER92_RS17415 965f715d8be819f31a78cc7f67922414 105 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 20 98 5.7E-24 T 16-09-2016 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein BER92_RS17415 965f715d8be819f31a78cc7f67922414 105 ProDom PD015450 MALONATE DECARBOXYLASE SUBUNIT DELTA ACYL CARRIER DECARBOXYLASE PLASMID DIRECT SEQUENCING 1 99 4.0E-44 T 16-09-2016 IPR009662 Malonate decarboxylase delta subunit BER92_RS17415 965f715d8be819f31a78cc7f67922414 105 TIGRFAM TIGR03130 malonate_delta: malonate decarboxylase acyl carrier protein 2 99 3.7E-36 T 16-09-2016 IPR009662 Malonate decarboxylase delta subunit BER92_RS12780 8991f2af47cb2027377dac6dbdfc7704 87 Gene3D G3DSA:1.10.10.60 7 83 9.0E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS12780 8991f2af47cb2027377dac6dbdfc7704 87 PANTHER PTHR33609 1 87 3.9E-42 T 16-09-2016 BER92_RS12780 8991f2af47cb2027377dac6dbdfc7704 87 SUPERFAMILY SSF46689 2 82 2.33E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS12780 8991f2af47cb2027377dac6dbdfc7704 87 Pfam PF01527 Transposase 2 70 8.4E-22 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS11425 372a57f105ce6bda5411efb882de3a66 142 PANTHER PTHR30007:SF0 17 127 7.2E-28 T 16-09-2016 BER92_RS11425 372a57f105ce6bda5411efb882de3a66 142 PANTHER PTHR30007 17 127 7.2E-28 T 16-09-2016 BER92_RS11425 372a57f105ce6bda5411efb882de3a66 142 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 17 91 1.5E-25 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS12315 12c46952d0f7b03b9659ece3b4ab14d0 113 SUPERFAMILY SSF82057 43 113 3.71E-18 T 16-09-2016 BER92_RS12315 12c46952d0f7b03b9659ece3b4ab14d0 113 Pfam PF03831 PhnA domain 45 113 2.0E-21 T 16-09-2016 IPR013988 PhnA protein, C-terminal BER92_RS12315 12c46952d0f7b03b9659ece3b4ab14d0 113 Gene3D G3DSA:2.30.30.40 43 113 3.6E-22 T 16-09-2016 BER92_RS12315 12c46952d0f7b03b9659ece3b4ab14d0 113 Gene3D G3DSA:2.20.25.10 17 41 2.0E-5 T 16-09-2016 BER92_RS12315 12c46952d0f7b03b9659ece3b4ab14d0 113 PANTHER PTHR30305:SF3 16 113 3.0E-28 T 16-09-2016 BER92_RS12315 12c46952d0f7b03b9659ece3b4ab14d0 113 PANTHER PTHR30305 16 113 3.0E-28 T 16-09-2016 BER92_RS08950 a0b7f241a678d7572e225f0ebe37a6d3 448 PANTHER PTHR30061:SF20 2 432 3.3E-183 T 16-09-2016 BER92_RS08950 a0b7f241a678d7572e225f0ebe37a6d3 448 SUPERFAMILY SSF53850 28 408 1.04E-86 T 16-09-2016 BER92_RS08950 a0b7f241a678d7572e225f0ebe37a6d3 448 Pfam PF13416 Bacterial extracellular solute-binding protein 44 354 2.3E-38 T 16-09-2016 BER92_RS08950 a0b7f241a678d7572e225f0ebe37a6d3 448 Gene3D G3DSA:3.40.190.10 29 142 2.3E-48 T 16-09-2016 BER92_RS08950 a0b7f241a678d7572e225f0ebe37a6d3 448 Gene3D G3DSA:3.40.190.10 297 369 2.3E-48 T 16-09-2016 BER92_RS08950 a0b7f241a678d7572e225f0ebe37a6d3 448 PANTHER PTHR30061 2 432 3.3E-183 T 16-09-2016 BER92_RS00415 2733eb7dacf8c2b6880e2c3b463799de 85 SUPERFAMILY SSF53098 19 85 5.12E-8 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS00415 2733eb7dacf8c2b6880e2c3b463799de 85 PANTHER PTHR32552 1 85 1.6E-35 T 16-09-2016 BER92_RS00415 2733eb7dacf8c2b6880e2c3b463799de 85 PANTHER PTHR32552:SF26 1 85 1.6E-35 T 16-09-2016 BER92_RS00415 2733eb7dacf8c2b6880e2c3b463799de 85 Gene3D G3DSA:3.30.420.10 27 85 8.3E-10 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS18670 6fa085964e40e0716a1fbe1fc84b6c4c 158 Gene3D G3DSA:3.40.50.1240 1 158 6.1E-48 T 16-09-2016 IPR029033 Histidine phosphatase superfamily BER92_RS18670 6fa085964e40e0716a1fbe1fc84b6c4c 158 PANTHER PTHR20935 1 101 4.5E-25 T 16-09-2016 BER92_RS18670 6fa085964e40e0716a1fbe1fc84b6c4c 158 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 98 3.2E-14 T 16-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 BER92_RS18670 6fa085964e40e0716a1fbe1fc84b6c4c 158 SUPERFAMILY SSF53254 1 140 4.87E-27 T 16-09-2016 IPR029033 Histidine phosphatase superfamily BER92_RS18670 6fa085964e40e0716a1fbe1fc84b6c4c 158 SMART SM00855 3 114 5.4E-7 T 16-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 BER92_RS09545 db55198561e1532a6010cd7c057e8e09 121 SUPERFAMILY SSF52172 3 121 3.13E-36 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS09545 db55198561e1532a6010cd7c057e8e09 121 Pfam PF00072 Response regulator receiver domain 5 116 1.5E-27 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09545 db55198561e1532a6010cd7c057e8e09 121 SMART SM00448 3 116 1.2E-36 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09545 db55198561e1532a6010cd7c057e8e09 121 PANTHER PTHR26402 3 120 3.8E-41 T 16-09-2016 BER92_RS09545 db55198561e1532a6010cd7c057e8e09 121 Gene3D G3DSA:3.40.50.2300 2 120 4.2E-37 T 16-09-2016 BER92_RS00075 7856d5c8e5d2940d96a8c858e46da9b4 255 PANTHER PTHR30456:SF0 1 255 8.9E-117 T 16-09-2016 BER92_RS00075 7856d5c8e5d2940d96a8c858e46da9b4 255 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 4 247 7.7E-81 T 16-09-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 BER92_RS00075 7856d5c8e5d2940d96a8c858e46da9b4 255 Gene3D G3DSA:3.20.20.70 3 251 1.2E-83 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS00075 7856d5c8e5d2940d96a8c858e46da9b4 255 SUPERFAMILY SSF63892 3 250 2.22E-76 T 16-09-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 BER92_RS00075 7856d5c8e5d2940d96a8c858e46da9b4 255 PANTHER PTHR30456 1 255 8.9E-117 T 16-09-2016 BER92_RS00075 7856d5c8e5d2940d96a8c858e46da9b4 255 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 4 249 1.9E-62 T 16-09-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 BER92_RS00075 7856d5c8e5d2940d96a8c858e46da9b4 255 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 253 81.967 T 16-09-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 BER92_RS00770 84a6346f9c9cc103b4c5a1d7fea89762 337 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 46 324 1.7E-66 T 16-09-2016 IPR006430 Phage portal protein PBSX family BER92_RS00770 84a6346f9c9cc103b4c5a1d7fea89762 337 Pfam PF04860 Phage portal protein 89 310 2.9E-10 T 16-09-2016 IPR006944 Bacteriophage/Gene transfer agent portal protein BER92_RS00770 84a6346f9c9cc103b4c5a1d7fea89762 337 PIRSF PIRSF018494 2 337 3.5E-143 T 16-09-2016 IPR030935 Phage portal protein PBSX family, Proteobacteria BER92_RS15085 675c9ce47e1362c73c48eb9c17a9fa6c 126 Pfam PF01609 Transposase DDE domain 4 116 1.2E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS15085 675c9ce47e1362c73c48eb9c17a9fa6c 126 PANTHER PTHR30007 1 120 8.0E-21 T 16-09-2016 BER92_RS15085 675c9ce47e1362c73c48eb9c17a9fa6c 126 PANTHER PTHR30007:SF0 1 120 8.0E-21 T 16-09-2016 BER92_RS16000 bedf869f77f8be2323d248b54167dc0a 186 Pfam PF07209 Protein of unknown function (DUF1415) 12 178 9.7E-71 T 16-09-2016 IPR009858 Protein of unknown function DUF1415 BER92_RS16990 63fe9092a6dd241a7f5e51637db6fa11 320 PANTHER PTHR33608 29 314 1.5E-108 T 16-09-2016 BER92_RS16990 63fe9092a6dd241a7f5e51637db6fa11 320 PANTHER PTHR33608:SF6 29 314 1.5E-108 T 16-09-2016 BER92_RS16990 63fe9092a6dd241a7f5e51637db6fa11 320 Pfam PF01882 Protein of unknown function DUF58 68 151 1.4E-19 T 16-09-2016 IPR002881 Domain of unknown function DUF58 BER92_RS16870 b62e6d58b50d6244e22bcb80187d24ae 112 Pfam PF12762 ISXO2-like transposase domain 9 59 1.4E-11 T 16-09-2016 IPR024445 ISXO2-like transposase domain BER92_RS15755 3c01f154f2691a88117d1d4dda4d9850 224 Pfam PF13500 AAA domain 5 211 8.5E-38 T 16-09-2016 BER92_RS15755 3c01f154f2691a88117d1d4dda4d9850 224 PANTHER PTHR21343:SF13 1 222 5.3E-105 T 16-09-2016 BER92_RS15755 3c01f154f2691a88117d1d4dda4d9850 224 PIRSF PIRSF006755 2 218 3.4E-74 T 16-09-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 BER92_RS15755 3c01f154f2691a88117d1d4dda4d9850 224 SUPERFAMILY SSF52540 1 212 9.74E-61 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15755 3c01f154f2691a88117d1d4dda4d9850 224 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 7 177 4.8E-48 T 16-09-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 BER92_RS15755 3c01f154f2691a88117d1d4dda4d9850 224 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 3 216 27.616 T 16-09-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 BER92_RS15755 3c01f154f2691a88117d1d4dda4d9850 224 Gene3D G3DSA:3.40.50.300 4 220 7.1E-76 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15755 3c01f154f2691a88117d1d4dda4d9850 224 PANTHER PTHR21343 1 222 5.3E-105 T 16-09-2016 BER92_RS06050 82683f5313786699ee755428884e2ad5 484 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 32 484 1.3E-146 T 16-09-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase BER92_RS06050 82683f5313786699ee755428884e2ad5 484 PANTHER PTHR30576 1 484 7.4E-209 T 16-09-2016 BER92_RS06050 82683f5313786699ee755428884e2ad5 484 Pfam PF02397 Bacterial sugar transferase 293 478 1.0E-55 T 16-09-2016 IPR003362 Bacterial sugar transferase BER92_RS06050 82683f5313786699ee755428884e2ad5 484 PANTHER PTHR30576:SF0 1 484 7.4E-209 T 16-09-2016 BER92_RS06050 82683f5313786699ee755428884e2ad5 484 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 33 484 7.8E-156 T 16-09-2016 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 BER92_RS06050 82683f5313786699ee755428884e2ad5 484 Pfam PF13727 CoA-binding domain 77 255 1.5E-32 T 16-09-2016 BER92_RS11575 f7a63612f9a01a831a973ae94edffa29 290 PANTHER PTHR22602:SF0 3 267 3.9E-37 T 16-09-2016 BER92_RS11575 f7a63612f9a01a831a973ae94edffa29 290 Gene3D G3DSA:3.30.70.1400 19 103 3.0E-15 T 16-09-2016 BER92_RS11575 f7a63612f9a01a831a973ae94edffa29 290 SUPERFAMILY SSF103025 10 218 1.29E-40 T 16-09-2016 BER92_RS11575 f7a63612f9a01a831a973ae94edffa29 290 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 163 227 9.4E-20 T 16-09-2016 IPR017703 YgfZ/GcvT conserved site BER92_RS11575 f7a63612f9a01a831a973ae94edffa29 290 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 202 261 1.1E-5 T 16-09-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BER92_RS11575 f7a63612f9a01a831a973ae94edffa29 290 PANTHER PTHR22602 3 267 3.9E-37 T 16-09-2016 BER92_RS11575 f7a63612f9a01a831a973ae94edffa29 290 Pfam PF01571 Aminomethyltransferase folate-binding domain 18 106 6.4E-6 T 16-09-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal BER92_RS02750 844ac97c11acfdb37f9e5d2daefe875d 411 PANTHER PTHR34138 20 348 1.9E-73 T 16-09-2016 BER92_RS02750 844ac97c11acfdb37f9e5d2daefe875d 411 Pfam PF04085 rod shape-determining protein MreC 134 274 8.3E-34 T 16-09-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 BER92_RS02750 844ac97c11acfdb37f9e5d2daefe875d 411 PANTHER PTHR34138:SF1 20 348 1.9E-73 T 16-09-2016 BER92_RS02750 844ac97c11acfdb37f9e5d2daefe875d 411 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 18 276 3.3E-51 T 16-09-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 BER92_RS04070 d68b28265bf5adc12c1f65ffcacc82c8 236 SUPERFAMILY SSF55174 5 70 1.57E-10 T 16-09-2016 BER92_RS04070 d68b28265bf5adc12c1f65ffcacc82c8 236 Gene3D G3DSA:3.10.290.10 3 63 2.6E-15 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS04070 d68b28265bf5adc12c1f65ffcacc82c8 236 SMART SM00363 5 63 0.0032 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS04070 d68b28265bf5adc12c1f65ffcacc82c8 236 SUPERFAMILY SSF55120 67 232 1.15E-17 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS04070 d68b28265bf5adc12c1f65ffcacc82c8 236 Pfam PF01479 S4 domain 6 41 2.8E-8 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS04070 d68b28265bf5adc12c1f65ffcacc82c8 236 PANTHER PTHR21600 1 233 2.9E-127 T 16-09-2016 BER92_RS04070 d68b28265bf5adc12c1f65ffcacc82c8 236 PANTHER PTHR21600:SF21 1 233 2.9E-127 T 16-09-2016 BER92_RS11690 23a66eddf5af4300360776c21ea67acf 358 Pfam PF00561 alpha/beta hydrolase fold 68 331 3.4E-23 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS11690 23a66eddf5af4300360776c21ea67acf 358 PANTHER PTHR36837 1 356 6.4E-233 T 16-09-2016 BER92_RS11690 23a66eddf5af4300360776c21ea67acf 358 SUPERFAMILY SSF53474 37 352 7.79E-34 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS11690 23a66eddf5af4300360776c21ea67acf 358 TIGRFAM TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit 7 354 2.5E-174 T 16-09-2016 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit GO:0016746|GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00917 BER92_RS11690 23a66eddf5af4300360776c21ea67acf 358 PANTHER PTHR36837:SF1 1 356 6.4E-233 T 16-09-2016 BER92_RS11690 23a66eddf5af4300360776c21ea67acf 358 Gene3D G3DSA:3.40.50.1820 48 354 1.1E-41 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS07890 332f877ed5c65602b198077e530f78bd 113 SMART SM00530 16 75 4.3E-9 T 16-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BER92_RS07890 332f877ed5c65602b198077e530f78bd 113 Pfam PF01381 Helix-turn-helix 17 75 9.6E-8 T 16-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BER92_RS07890 332f877ed5c65602b198077e530f78bd 113 Gene3D G3DSA:1.10.260.40 11 83 1.6E-13 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS07890 332f877ed5c65602b198077e530f78bd 113 SUPERFAMILY SSF47413 10 81 3.94E-10 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS13495 1f22a840c1ecc2466b83d033a03bbb00 485 PANTHER PTHR30508 9 485 0.0 T 16-09-2016 BER92_RS13495 1f22a840c1ecc2466b83d033a03bbb00 485 Pfam PF01458 Uncharacterized protein family (UPF0051) 223 456 4.0E-67 T 16-09-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 BER92_RS13495 1f22a840c1ecc2466b83d033a03bbb00 485 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 476 1.3E-193 T 16-09-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 BER92_RS13495 1f22a840c1ecc2466b83d033a03bbb00 485 SUPERFAMILY SSF101960 41 482 3.66E-137 T 16-09-2016 BER92_RS13495 1f22a840c1ecc2466b83d033a03bbb00 485 PANTHER PTHR30508:SF1 9 485 0.0 T 16-09-2016 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 Pfam PF00175 Oxidoreductase NAD-binding domain 106 213 7.3E-18 T 16-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 105 124 1.1E-6 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 41 48 1.1E-6 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 200 208 1.1E-6 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 144 155 1.1E-6 T 16-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 Gene3D G3DSA:3.40.50.80 94 232 2.3E-39 T 16-09-2016 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 SUPERFAMILY SSF63380 3 99 2.87E-17 T 16-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PANTHER PTHR19370:SF32 1 235 9.3E-54 T 16-09-2016 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PRINTS PR00410 Phenol hydroxylase reductase family signature 88 97 6.0E-6 T 16-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 6.0E-6 T 16-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PRINTS PR00410 Phenol hydroxylase reductase family signature 21 33 6.0E-6 T 16-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PRINTS PR00410 Phenol hydroxylase reductase family signature 200 208 6.0E-6 T 16-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 Gene3D G3DSA:2.40.30.10 3 93 2.5E-16 T 16-09-2016 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 Pfam PF00970 Oxidoreductase FAD-binding domain 9 93 3.9E-11 T 16-09-2016 IPR008333 Oxidoreductase, FAD-binding domain BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 SUPERFAMILY SSF52343 97 234 4.71E-34 T 16-09-2016 BER92_RS00615 dd8addcb1be88fe0cd414b40c00c15ab 242 PANTHER PTHR19370 1 235 9.3E-54 T 16-09-2016 BER92_RS18150 90e8da0cce2994b212e9bbedfdf582de 119 Pfam PF13202 EF hand 85 104 0.035 T 16-09-2016 IPR002048 EF-hand domain GO:0005509 BER92_RS18150 90e8da0cce2994b212e9bbedfdf582de 119 Pfam PF13202 EF hand 61 73 0.067 T 16-09-2016 IPR002048 EF-hand domain GO:0005509 BER92_RS18150 90e8da0cce2994b212e9bbedfdf582de 119 ProSitePatterns PS00018 EF-hand calcium-binding domain. 88 100 - T 16-09-2016 IPR018247 EF-Hand 1, calcium-binding site BER92_RS18150 90e8da0cce2994b212e9bbedfdf582de 119 SUPERFAMILY SSF47473 56 106 5.11E-7 T 16-09-2016 IPR011992 EF-hand domain pair BER92_RS18150 90e8da0cce2994b212e9bbedfdf582de 119 Gene3D G3DSA:1.10.238.10 58 106 1.4E-6 T 16-09-2016 IPR011992 EF-hand domain pair BER92_RS04030 b30578c98584902d9c797672af227670 102 PANTHER PTHR34477:SF1 1 101 2.7E-37 T 16-09-2016 BER92_RS04030 b30578c98584902d9c797672af227670 102 PANTHER PTHR34477 1 101 2.7E-37 T 16-09-2016 BER92_RS04030 b30578c98584902d9c797672af227670 102 SUPERFAMILY SSF82771 6 77 1.83E-10 T 16-09-2016 IPR000305 GIY-YIG nuclease superfamily BER92_RS04030 b30578c98584902d9c797672af227670 102 Pfam PF01541 GIY-YIG catalytic domain 7 76 1.0E-12 T 16-09-2016 IPR000305 GIY-YIG nuclease superfamily BER92_RS12455 b280ee1a6b694a5ae77b61b77329ea4a 249 PANTHER PTHR21666 130 249 3.4E-36 T 16-09-2016 BER92_RS12455 b280ee1a6b694a5ae77b61b77329ea4a 249 PANTHER PTHR21666 42 58 3.4E-36 T 16-09-2016 BER92_RS12455 b280ee1a6b694a5ae77b61b77329ea4a 249 SUPERFAMILY SSF54001 121 248 3.43E-39 T 16-09-2016 BER92_RS12455 b280ee1a6b694a5ae77b61b77329ea4a 249 Gene3D G3DSA:3.90.1720.10 119 249 2.7E-44 T 16-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS12455 b280ee1a6b694a5ae77b61b77329ea4a 249 Pfam PF00877 NlpC/P60 family 139 247 2.4E-29 T 16-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS10490 0a09eb6f96506cb5085c759de6955a71 267 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS10490 0a09eb6f96506cb5085c759de6955a71 267 PANTHER PTHR30007 7 258 2.4E-131 T 16-09-2016 BER92_RS10490 0a09eb6f96506cb5085c759de6955a71 267 Pfam PF01609 Transposase DDE domain 100 251 2.1E-19 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10490 0a09eb6f96506cb5085c759de6955a71 267 PANTHER PTHR30007:SF17 7 258 2.4E-131 T 16-09-2016 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 Gene3D G3DSA:3.60.20.10 25 446 7.2E-145 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 SUPERFAMILY SSF56235 25 440 3.86E-128 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 Pfam PF01493 GXGXG motif 1247 1430 1.5E-75 T 16-09-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 SUPERFAMILY SSF51395 456 1206 2.2E-248 T 16-09-2016 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 Pfam PF00310 Glutamine amidotransferases class-II 25 437 7.0E-153 T 16-09-2016 IPR017932 Glutamine amidotransferase type 2 domain BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 PANTHER PTHR11938:SF1 13 1484 0.0 T 16-09-2016 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 Gene3D G3DSA:2.160.20.60 1225 1476 1.4E-90 T 16-09-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 Gene3D G3DSA:3.20.20.70 825 1197 8.4E-164 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 Gene3D G3DSA:3.20.20.70 452 788 3.7E-91 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 Pfam PF04898 Glutamate synthase central domain 467 750 3.0E-99 T 16-09-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 SUPERFAMILY SSF69336 1225 1476 1.96E-85 T 16-09-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 Pfam PF01645 Conserved region in glutamate synthase 806 1169 4.8E-148 T 16-09-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 BER92_RS18910 81a090197038e8e1ec84a42f4721d545 1490 PANTHER PTHR11938 13 1484 0.0 T 16-09-2016 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 ProSitePatterns PS00221 MIP family signature. 67 75 - T 16-09-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 Pfam PF00230 Major intrinsic protein 4 248 9.1E-50 T 16-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 PRINTS PR00783 Major intrinsic protein family signature 183 205 1.4E-41 T 16-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 PRINTS PR00783 Major intrinsic protein family signature 49 73 1.4E-41 T 16-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 PRINTS PR00783 Major intrinsic protein family signature 86 105 1.4E-41 T 16-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 PRINTS PR00783 Major intrinsic protein family signature 7 26 1.4E-41 T 16-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 PRINTS PR00783 Major intrinsic protein family signature 149 167 1.4E-41 T 16-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 PRINTS PR00783 Major intrinsic protein family signature 231 251 1.4E-41 T 16-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 Gene3D G3DSA:1.20.1080.10 2 252 7.9E-75 T 16-09-2016 IPR023271 Aquaporin-like BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 TIGRFAM TIGR00861 MIP: MIP family channel proteins 12 248 2.9E-60 T 16-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 SUPERFAMILY SSF81338 5 253 2.09E-63 T 16-09-2016 IPR023271 Aquaporin-like BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 PANTHER PTHR19139:SF100 3 252 3.5E-84 T 16-09-2016 BER92_RS17750 3140b4cee30b405b968e3948841cb414 273 PANTHER PTHR19139 3 252 3.5E-84 T 16-09-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01885 a412ea2934bfa28651755585f6a342af 220 PANTHER PTHR32063 1 161 5.7E-46 T 16-09-2016 BER92_RS01885 a412ea2934bfa28651755585f6a342af 220 SUPERFAMILY SSF82693 41 130 2.14E-15 T 16-09-2016 BER92_RS01885 a412ea2934bfa28651755585f6a342af 220 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.8E-5 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01885 a412ea2934bfa28651755585f6a342af 220 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.8E-5 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS01885 a412ea2934bfa28651755585f6a342af 220 PANTHER PTHR32063:SF20 1 161 5.7E-46 T 16-09-2016 BER92_RS01885 a412ea2934bfa28651755585f6a342af 220 Gene3D G3DSA:3.30.70.1430 41 140 1.6E-17 T 16-09-2016 BER92_RS01885 a412ea2934bfa28651755585f6a342af 220 Pfam PF00873 AcrB/AcrD/AcrF family 5 159 8.4E-27 T 16-09-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 Pfam PF00593 TonB dependent receptor 623 891 9.7E-31 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 SUPERFAMILY SSF56935 530 891 2.38E-82 T 16-09-2016 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 SUPERFAMILY SSF56935 277 486 2.38E-82 T 16-09-2016 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 SUPERFAMILY SSF56935 44 245 2.38E-82 T 16-09-2016 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 PANTHER PTHR32552 1 251 4.4E-40 T 16-09-2016 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 PANTHER PTHR32552:SF16 461 892 4.4E-40 T 16-09-2016 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 56 891 9.5E-212 T 16-09-2016 IPR010104 Bacterial TonB-dependent receptor BER92_RS10050 f37850ba490721ed81550c148a75c264 892 PANTHER PTHR32552:SF16 1 251 4.4E-40 T 16-09-2016 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 PANTHER PTHR32552:SF16 274 375 4.4E-40 T 16-09-2016 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 PANTHER PTHR32552 461 892 4.4E-40 T 16-09-2016 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 PANTHER PTHR32552 274 375 4.4E-40 T 16-09-2016 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 Pfam PF07715 TonB-dependent Receptor Plug Domain 76 176 2.5E-13 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 Gene3D G3DSA:2.40.170.20 561 891 2.2E-59 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 Gene3D G3DSA:2.40.170.20 426 513 2.2E-59 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 Gene3D G3DSA:2.40.170.20 180 393 2.2E-59 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10050 f37850ba490721ed81550c148a75c264 892 Gene3D G3DSA:2.170.130.10 83 179 8.7E-13 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS07225 7a28d40094d4ad5d706fb3ec37b830f9 251 Gene3D G3DSA:3.20.20.70 1 249 1.4E-97 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS07225 7a28d40094d4ad5d706fb3ec37b830f9 251 Pfam PF00121 Triosephosphate isomerase 4 244 2.3E-89 T 16-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 BER92_RS07225 7a28d40094d4ad5d706fb3ec37b830f9 251 PANTHER PTHR21139 1 250 3.3E-116 T 16-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 BER92_RS07225 7a28d40094d4ad5d706fb3ec37b830f9 251 ProSitePatterns PS00171 Triosephosphate isomerase active site. 164 174 - T 16-09-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 BER92_RS07225 7a28d40094d4ad5d706fb3ec37b830f9 251 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 40.997 T 16-09-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 BER92_RS07225 7a28d40094d4ad5d706fb3ec37b830f9 251 SUPERFAMILY SSF51351 1 247 1.57E-87 T 16-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 BER92_RS07225 7a28d40094d4ad5d706fb3ec37b830f9 251 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 239 6.9E-64 T 16-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 BER92_RS03765 cdf585ec3b3325a19203845e027a20c5 361 PANTHER PTHR22926:SF5 2 361 9.0E-178 T 16-09-2016 BER92_RS03765 cdf585ec3b3325a19203845e027a20c5 361 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 361 4.6E-130 T 16-09-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS03765 cdf585ec3b3325a19203845e027a20c5 361 PANTHER PTHR22926 2 361 9.0E-178 T 16-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS03765 cdf585ec3b3325a19203845e027a20c5 361 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 16-09-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS03765 cdf585ec3b3325a19203845e027a20c5 361 Pfam PF00953 Glycosyl transferase family 4 99 285 3.0E-33 T 16-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS03765 cdf585ec3b3325a19203845e027a20c5 361 ProSitePatterns PS01348 MraY family signature 2. 190 201 - T 16-09-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS03765 cdf585ec3b3325a19203845e027a20c5 361 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 359 24.541 T 16-09-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS11330 3b6e3d699c692add7439f2d22c1fd777 359 PANTHER PTHR37951:SF1 1 353 8.2E-46 T 16-09-2016 BER92_RS11330 3b6e3d699c692add7439f2d22c1fd777 359 PANTHER PTHR37951 1 353 8.2E-46 T 16-09-2016 BER92_RS11330 3b6e3d699c692add7439f2d22c1fd777 359 Pfam PF06812 ImpA, N-terminal, type VI secretion system 8 130 3.4E-37 T 16-09-2016 IPR010657 ImpA, N-terminal BER92_RS11330 3b6e3d699c692add7439f2d22c1fd777 359 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 2 352 1.2E-130 T 16-09-2016 IPR017740 Type VI secretion system-associated, ImpA BER92_RS05610 8460e97025d349eefcaa1b0b1e13f585 209 Gene3D G3DSA:1.10.357.10 11 179 7.6E-16 T 16-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 BER92_RS05610 8460e97025d349eefcaa1b0b1e13f585 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 7.1E-10 T 16-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BER92_RS05610 8460e97025d349eefcaa1b0b1e13f585 209 PANTHER PTHR30055:SF92 6 170 3.3E-21 T 16-09-2016 BER92_RS05610 8460e97025d349eefcaa1b0b1e13f585 209 PANTHER PTHR30055 6 170 3.3E-21 T 16-09-2016 BER92_RS05610 8460e97025d349eefcaa1b0b1e13f585 209 SUPERFAMILY SSF46689 6 81 4.1E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS18695 35dac25bfe71d8984661c87aee5e0321 1230 Gene3D G3DSA:3.40.50.970 508 635 2.6E-8 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS18695 35dac25bfe71d8984661c87aee5e0321 1230 Gene3D G3DSA:3.40.920.10 740 937 3.0E-19 T 16-09-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 BER92_RS18695 35dac25bfe71d8984661c87aee5e0321 1230 PANTHER PTHR18968 179 775 1.3E-222 T 16-09-2016 BER92_RS18695 35dac25bfe71d8984661c87aee5e0321 1230 SUPERFAMILY SSF52518 453 641 1.18E-11 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS18695 35dac25bfe71d8984661c87aee5e0321 1230 SUPERFAMILY SSF52518 41 214 3.41E-12 T 16-09-2016 IPR029061 Thiamin diphosphate-binding fold BER92_RS18695 35dac25bfe71d8984661c87aee5e0321 1230 SUPERFAMILY SSF53323 739 941 7.72E-29 T 16-09-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 BER92_RS18695 35dac25bfe71d8984661c87aee5e0321 1230 SUPERFAMILY SSF52922 285 416 2.92E-8 T 16-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 BER92_RS18695 35dac25bfe71d8984661c87aee5e0321 1230 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 747 934 2.1E-21 T 16-09-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 BER92_RS18695 35dac25bfe71d8984661c87aee5e0321 1230 PANTHER PTHR18968:SF134 179 775 1.3E-222 T 16-09-2016 BER92_RS10785 2af9d9dfe6e53f320baf2f34718506de 601 SUPERFAMILY SSF52540 111 253 2.16E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10785 2af9d9dfe6e53f320baf2f34718506de 601 SUPERFAMILY SSF52540 283 573 2.16E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10785 2af9d9dfe6e53f320baf2f34718506de 601 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 99 578 9.0E-93 T 16-09-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 BER92_RS10785 2af9d9dfe6e53f320baf2f34718506de 601 PANTHER PTHR37937 278 589 1.7E-71 T 16-09-2016 BER92_RS10785 2af9d9dfe6e53f320baf2f34718506de 601 PANTHER PTHR37937 2 252 1.7E-71 T 16-09-2016 BER92_RS10785 2af9d9dfe6e53f320baf2f34718506de 601 PANTHER PTHR37937:SF1 2 252 1.7E-71 T 16-09-2016 BER92_RS10785 2af9d9dfe6e53f320baf2f34718506de 601 Gene3D G3DSA:3.40.50.300 370 573 1.3E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10785 2af9d9dfe6e53f320baf2f34718506de 601 Gene3D G3DSA:3.40.50.300 95 203 1.3E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10785 2af9d9dfe6e53f320baf2f34718506de 601 PANTHER PTHR37937:SF1 278 589 1.7E-71 T 16-09-2016 BER92_RS12665 f36b60dd64864d9e041de0a433c0bf2b 284 Pfam PF12762 ISXO2-like transposase domain 122 249 4.2E-22 T 16-09-2016 IPR024445 ISXO2-like transposase domain BER92_RS12665 f36b60dd64864d9e041de0a433c0bf2b 284 SMART SM01126 104 249 6.4E-25 T 16-09-2016 IPR024445 ISXO2-like transposase domain BER92_RS08875 2db279c8be02d2d589e7de34604a9c9e 250 PANTHER PTHR30071 7 227 3.7E-76 T 16-09-2016 BER92_RS08875 2db279c8be02d2d589e7de34604a9c9e 250 Pfam PF01578 Cytochrome C assembly protein 36 187 4.3E-29 T 16-09-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BER92_RS08875 2db279c8be02d2d589e7de34604a9c9e 250 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 48 228 3.4E-70 T 16-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08875 2db279c8be02d2d589e7de34604a9c9e 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 103 123 9.4E-47 T 16-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08875 2db279c8be02d2d589e7de34604a9c9e 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 65 85 9.4E-47 T 16-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08875 2db279c8be02d2d589e7de34604a9c9e 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 124 144 9.4E-47 T 16-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08875 2db279c8be02d2d589e7de34604a9c9e 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 159 185 9.4E-47 T 16-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08875 2db279c8be02d2d589e7de34604a9c9e 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 48 65 9.4E-47 T 16-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08875 2db279c8be02d2d589e7de34604a9c9e 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 207 231 9.4E-47 T 16-09-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 Pfam PF00698 Acyl transferase domain 6 279 9.6E-22 T 16-09-2016 IPR014043 Acyl transferase BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 TIGRFAM TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit 4 298 2.9E-97 T 16-09-2016 IPR017554 Malonate decarboxylase, McdH subunit BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 289 9.6E-16 T 16-09-2016 IPR020801 Polyketide synthase, acyl transferase domain BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 PANTHER PTHR10982:SF16 1 304 5.7E-123 T 16-09-2016 BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 PANTHER PTHR10982 1 304 5.7E-123 T 16-09-2016 BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 Gene3D G3DSA:3.40.366.10 3 116 4.0E-40 T 16-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 Gene3D G3DSA:3.40.366.10 185 288 4.0E-40 T 16-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 Gene3D G3DSA:3.30.70.250 122 184 2.1E-8 T 16-09-2016 BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 SUPERFAMILY SSF52151 3 116 4.19E-42 T 16-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 SUPERFAMILY SSF52151 178 298 4.19E-42 T 16-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 BER92_RS17390 7a4e2e8a6994dadedc6685e36821c6fc 306 SUPERFAMILY SSF55048 124 185 6.8E-9 T 16-09-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 BER92_RS01695 c3af535b9b09edc805bbd7a2d4c183f7 249 Gene3D G3DSA:3.40.1130.10 68 242 5.8E-25 T 16-09-2016 BER92_RS01695 c3af535b9b09edc805bbd7a2d4c183f7 249 SUPERFAMILY SSF69593 12 245 8.24E-55 T 16-09-2016 BER92_RS01695 c3af535b9b09edc805bbd7a2d4c183f7 249 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 64 192 5.8E-35 T 16-09-2016 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|Reactome: REACT_22258|UniPathway: UPA00557 BER92_RS01695 c3af535b9b09edc805bbd7a2d4c183f7 249 Pfam PF01553 Acyltransferase 67 192 3.0E-31 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS01695 c3af535b9b09edc805bbd7a2d4c183f7 249 PANTHER PTHR10434 5 246 6.6E-54 T 16-09-2016 BER92_RS01695 c3af535b9b09edc805bbd7a2d4c183f7 249 SMART SM00563 81 195 3.9E-39 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS18110 e0080f902ab3f68a498e3c30a7701462 124 PANTHER PTHR34583:SF1 1 124 1.1E-75 T 16-09-2016 BER92_RS18110 e0080f902ab3f68a498e3c30a7701462 124 PANTHER PTHR34583 1 124 1.1E-75 T 16-09-2016 BER92_RS18110 e0080f902ab3f68a498e3c30a7701462 124 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 109 7.0E-22 T 16-09-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 BER92_RS19085 33318b593c6e73450d51224cb4e8ba1f 273 Pfam PF01925 Sulfite exporter TauE/SafE 29 267 3.5E-34 T 16-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 BER92_RS19085 33318b593c6e73450d51224cb4e8ba1f 273 PANTHER PTHR30269 20 273 5.4E-91 T 16-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 BER92_RS19085 33318b593c6e73450d51224cb4e8ba1f 273 PANTHER PTHR30269:SF0 20 273 5.4E-91 T 16-09-2016 BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 3 75 1.9E-5 T 16-09-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 Gene3D G3DSA:1.10.10.10 78 160 1.0E-33 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 4 161 36.436 T 16-09-2016 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 PANTHER PTHR10815:SF5 1 159 2.9E-56 T 16-09-2016 BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 129 135 - T 16-09-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 SUPERFAMILY SSF53155 4 82 6.08E-18 T 16-09-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 80 159 1.4E-31 T 16-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 79 158 1.4E-33 T 16-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 SUPERFAMILY SSF46767 78 160 7.85E-32 T 16-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 BER92_RS13120 22eee5d192fed22f213a25d373ff4e9e 181 PANTHER PTHR10815 1 159 2.9E-56 T 16-09-2016 BER92_RS14375 44b3778ddf4e3c03e66c3cf5529d3e49 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.8E-19 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS14375 44b3778ddf4e3c03e66c3cf5529d3e49 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.8E-19 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS14375 44b3778ddf4e3c03e66c3cf5529d3e49 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.8E-19 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS14375 44b3778ddf4e3c03e66c3cf5529d3e49 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.2E-34 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS14375 44b3778ddf4e3c03e66c3cf5529d3e49 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 16-09-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BER92_RS14375 44b3778ddf4e3c03e66c3cf5529d3e49 90 SMART SM00411 1 90 7.2E-45 T 16-09-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 BER92_RS14375 44b3778ddf4e3c03e66c3cf5529d3e49 90 Gene3D G3DSA:4.10.520.10 1 90 1.3E-38 T 16-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 BER92_RS14375 44b3778ddf4e3c03e66c3cf5529d3e49 90 SUPERFAMILY SSF47729 1 90 5.0E-33 T 16-09-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 BER92_RS14375 44b3778ddf4e3c03e66c3cf5529d3e49 90 PANTHER PTHR33175 1 90 1.6E-46 T 16-09-2016 BER92_RS06460 56531f7887946306ee988fc47ee49f1b 782 PANTHER PTHR30451:SF5 37 780 0.0 T 16-09-2016 BER92_RS06460 56531f7887946306ee988fc47ee49f1b 782 Pfam PF13953 PapC C-terminal domain 702 762 1.9E-11 T 16-09-2016 IPR025949 PapC-like, C-terminal domain BER92_RS06460 56531f7887946306ee988fc47ee49f1b 782 PANTHER PTHR30451 37 780 0.0 T 16-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 BER92_RS06460 56531f7887946306ee988fc47ee49f1b 782 Pfam PF00577 Outer membrane usher protein 478 691 5.1E-16 T 16-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 BER92_RS06460 56531f7887946306ee988fc47ee49f1b 782 Pfam PF00577 Outer membrane usher protein 196 362 1.5E-12 T 16-09-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 BER92_RS15355 73138cb1bd72edafac09fb552b5670b1 267 SUPERFAMILY SSF47240 66 262 3.48E-21 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS15355 73138cb1bd72edafac09fb552b5670b1 267 PIRSF PIRSF012318 1 267 5.4E-106 T 16-09-2016 IPR011197 Uncharacterised conserved protein UCP012318 BER92_RS15355 73138cb1bd72edafac09fb552b5670b1 267 Pfam PF04305 Protein of unknown function (DUF455) 14 259 7.1E-98 T 16-09-2016 IPR007402 Protein of unknown function DUF455 BER92_RS15355 73138cb1bd72edafac09fb552b5670b1 267 PANTHER PTHR21496:SF10 1 267 1.5E-124 T 16-09-2016 BER92_RS15355 73138cb1bd72edafac09fb552b5670b1 267 PANTHER PTHR21496 1 267 1.5E-124 T 16-09-2016 BER92_RS06580 85a10d40a6452b0d3fc9c7498b7c147b 202 Pfam PF01694 Rhomboid family 35 186 2.4E-25 T 16-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BER92_RS06580 85a10d40a6452b0d3fc9c7498b7c147b 202 SUPERFAMILY SSF144091 3 186 6.02E-33 T 16-09-2016 BER92_RS06580 85a10d40a6452b0d3fc9c7498b7c147b 202 PANTHER PTHR22936 1 202 3.7E-25 T 16-09-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 BER92_RS06580 85a10d40a6452b0d3fc9c7498b7c147b 202 Gene3D G3DSA:1.20.1540.10 3 186 7.3E-35 T 16-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BER92_RS08385 ad9160b102dc0527c70eb8555d7e73b6 481 Pfam PF08411 Exonuclease C-terminal 206 474 6.7E-89 T 16-09-2016 IPR013620 Exonuclease C-terminal GO:0006281|GO:0008852 BER92_RS08385 ad9160b102dc0527c70eb8555d7e73b6 481 PANTHER PTHR11046:SF2 4 477 1.1E-244 T 16-09-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 BER92_RS08385 ad9160b102dc0527c70eb8555d7e73b6 481 PANTHER PTHR11046 4 477 1.1E-244 T 16-09-2016 BER92_RS08385 ad9160b102dc0527c70eb8555d7e73b6 481 SUPERFAMILY SSF53098 5 477 1.2E-114 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS08385 ad9160b102dc0527c70eb8555d7e73b6 481 SMART SM00479 4 197 1.3E-7 T 16-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III BER92_RS08385 ad9160b102dc0527c70eb8555d7e73b6 481 Pfam PF00929 Exonuclease 7 186 1.4E-23 T 16-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III BER92_RS08385 ad9160b102dc0527c70eb8555d7e73b6 481 PIRSF PIRSF000977 1 481 4.7E-175 T 16-09-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 BER92_RS08385 ad9160b102dc0527c70eb8555d7e73b6 481 Gene3D G3DSA:3.30.420.10 3 193 1.7E-73 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS16490 32eaef91c78b64d2132d0198a82c24c7 372 PANTHER PTHR22893 9 360 2.1E-143 T 16-09-2016 BER92_RS16490 32eaef91c78b64d2132d0198a82c24c7 372 PANTHER PTHR22893:SF7 9 360 2.1E-143 T 16-09-2016 BER92_RS16490 32eaef91c78b64d2132d0198a82c24c7 372 SUPERFAMILY SSF51395 8 362 5.19E-108 T 16-09-2016 BER92_RS16490 32eaef91c78b64d2132d0198a82c24c7 372 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 10 344 3.3E-64 T 16-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BER92_RS16490 32eaef91c78b64d2132d0198a82c24c7 372 Gene3D G3DSA:3.20.20.70 9 362 2.6E-118 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS05915 37801899e037b4712fbcb2310da57695 364 PANTHER PTHR32332:SF12 13 93 2.2E-114 T 16-09-2016 BER92_RS05915 37801899e037b4712fbcb2310da57695 364 Gene3D G3DSA:3.20.20.70 17 342 2.5E-53 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS05915 37801899e037b4712fbcb2310da57695 364 SUPERFAMILY SSF51412 6 344 3.51E-51 T 16-09-2016 BER92_RS05915 37801899e037b4712fbcb2310da57695 364 PANTHER PTHR32332:SF12 118 360 2.2E-114 T 16-09-2016 BER92_RS05915 37801899e037b4712fbcb2310da57695 364 Pfam PF03060 Nitronate monooxygenase 26 353 1.3E-65 T 16-09-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 BER92_RS05915 37801899e037b4712fbcb2310da57695 364 PANTHER PTHR32332 118 360 2.2E-114 T 16-09-2016 BER92_RS05915 37801899e037b4712fbcb2310da57695 364 PANTHER PTHR32332 13 93 2.2E-114 T 16-09-2016 BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 219 1.6E-65 T 16-09-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 PANTHER PTHR13767:SF2 3 299 5.0E-108 T 16-09-2016 BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 239 1.3E-15 T 16-09-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 299 17.685 T 16-09-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 PANTHER PTHR13767 3 299 5.0E-108 T 16-09-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 32 180 3.7E-48 T 16-09-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 Gene3D G3DSA:2.30.130.10 242 300 1.7E-12 T 16-09-2016 IPR015947 PUA-like domain BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 245 299 7.7E-11 T 16-09-2016 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 SUPERFAMILY SSF55120 9 223 7.19E-71 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS07335 e3002a9b03033bf4c4fd48e3ee7d2865 308 SUPERFAMILY SSF88697 244 300 1.94E-6 T 16-09-2016 IPR015947 PUA-like domain BER92_RS06060 d9d198f5ee3180a20a833b2bd63bdcd5 363 Pfam PF01757 Acyltransferase family 30 345 1.3E-24 T 16-09-2016 IPR002656 Acyltransferase 3 GO:0016747 BER92_RS06060 d9d198f5ee3180a20a833b2bd63bdcd5 363 PANTHER PTHR37312 12 363 3.6E-81 T 16-09-2016 BER92_RS07035 4d4b3a90f37c322a5297446b50e6507a 214 PANTHER PTHR39323 6 212 5.9E-59 T 16-09-2016 BER92_RS07035 4d4b3a90f37c322a5297446b50e6507a 214 Gene3D G3DSA:3.60.21.10 28 157 1.7E-11 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS07035 4d4b3a90f37c322a5297446b50e6507a 214 PANTHER PTHR39323:SF1 6 212 5.9E-59 T 16-09-2016 BER92_RS07035 4d4b3a90f37c322a5297446b50e6507a 214 SUPERFAMILY SSF56300 28 161 1.23E-14 T 16-09-2016 IPR029052 Metallo-dependent phosphatase-like BER92_RS07035 4d4b3a90f37c322a5297446b50e6507a 214 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 8 207 7.1E-54 T 16-09-2016 IPR026336 Metallophosphoesterase, DNA ligase-associated BER92_RS07035 4d4b3a90f37c322a5297446b50e6507a 214 PIRSF PIRSF000887 7 211 2.1E-50 T 16-09-2016 IPR024173 Phosphoesterase, MJ0037 BER92_RS07035 4d4b3a90f37c322a5297446b50e6507a 214 Pfam PF00149 Calcineurin-like phosphoesterase 29 121 8.7E-8 T 16-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 BER92_RS07305 bcfeee3ecf000e9d44bc6af694734fc5 486 PANTHER PTHR22773 9 485 1.3E-184 T 16-09-2016 BER92_RS07305 bcfeee3ecf000e9d44bc6af694734fc5 486 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 15 472 1.7E-138 T 16-09-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 BER92_RS07305 bcfeee3ecf000e9d44bc6af694734fc5 486 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 417 436 1.7E-7 T 16-09-2016 BER92_RS07305 bcfeee3ecf000e9d44bc6af694734fc5 486 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 312 324 1.7E-7 T 16-09-2016 BER92_RS07305 bcfeee3ecf000e9d44bc6af694734fc5 486 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 78 103 1.7E-7 T 16-09-2016 BER92_RS07305 bcfeee3ecf000e9d44bc6af694734fc5 486 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 220 241 1.7E-7 T 16-09-2016 BER92_RS07305 bcfeee3ecf000e9d44bc6af694734fc5 486 Pfam PF00361 Proton-conducting membrane transporter 130 423 1.2E-74 T 16-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 BER92_RS07305 bcfeee3ecf000e9d44bc6af694734fc5 486 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 12 475 17.881 T 16-09-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 BER92_RS07305 bcfeee3ecf000e9d44bc6af694734fc5 486 PANTHER PTHR22773:SF41 9 485 1.3E-184 T 16-09-2016 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 SMART SM00382 57 230 1.2E-11 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 PRINTS PR00142 RecA protein signature 165 194 2.8E-85 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 PRINTS PR00142 RecA protein signature 127 156 2.8E-85 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 PRINTS PR00142 RecA protein signature 212 240 2.8E-85 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 PRINTS PR00142 RecA protein signature 245 274 2.8E-85 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 PRINTS PR00142 RecA protein signature 93 122 2.8E-85 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 PRINTS PR00142 RecA protein signature 299 316 2.8E-85 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 Pfam PF00154 recA bacterial DNA recombination protein 7 270 8.5E-140 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 SUPERFAMILY SSF54752 270 327 2.35E-20 T 16-09-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 326 3.8E-165 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 PANTHER PTHR22942 3 337 5.0E-199 T 16-09-2016 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 ProSitePatterns PS00321 recA signature. 215 223 - T 16-09-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 PANTHER PTHR22942:SF1 3 337 5.0E-199 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 SUPERFAMILY SSF52540 4 269 2.15E-65 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 Gene3D G3DSA:3.40.50.300 34 269 3.8E-79 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 Gene3D G3DSA:3.30.250.10 270 328 1.9E-27 T 16-09-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal BER92_RS11045 ffdc1d5598ffdc976cb925c8bcaedfb4 343 Hamap MF_00268 Protein RecA [recA]. 5 331 50.498 T 16-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 Pfam PF00920 Dehydratase family 34 603 3.1E-216 T 16-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 PANTHER PTHR21000:SF11 404 612 0.0 T 16-09-2016 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 SUPERFAMILY SSF143975 4 418 3.01E-134 T 16-09-2016 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 PANTHER PTHR21000:SF11 1 369 0.0 T 16-09-2016 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 PANTHER PTHR21000 1 369 0.0 T 16-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 606 44.718 T 16-09-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 16-09-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 507 518 - T 16-09-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 SUPERFAMILY SSF52016 419 607 1.73E-60 T 16-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 PANTHER PTHR21000 404 612 0.0 T 16-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS16430 72639b19b3d2985b419f9eeebc99c40d 612 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 606 4.4E-248 T 16-09-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS08115 accbc3badbbc34c722b6f1251bfcb2b8 291 Gene3D G3DSA:3.40.50.300 4 229 2.3E-42 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08115 accbc3badbbc34c722b6f1251bfcb2b8 291 PANTHER PTHR24220:SF530 11 231 3.3E-103 T 16-09-2016 BER92_RS08115 accbc3badbbc34c722b6f1251bfcb2b8 291 SUPERFAMILY SSF52540 9 226 5.61E-41 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS08115 accbc3badbbc34c722b6f1251bfcb2b8 291 SMART SM00382 34 220 8.4E-13 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS08115 accbc3badbbc34c722b6f1251bfcb2b8 291 PANTHER PTHR24220 11 231 3.3E-103 T 16-09-2016 BER92_RS08115 accbc3badbbc34c722b6f1251bfcb2b8 291 Pfam PF00005 ABC transporter 25 162 1.9E-18 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS04375 7d5469b33f76bc6a2447c14a446b7bb9 137 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 1 25 1.7E-7 T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS04375 7d5469b33f76bc6a2447c14a446b7bb9 137 PANTHER PTHR38779 1 132 2.5E-55 T 16-09-2016 BER92_RS04375 7d5469b33f76bc6a2447c14a446b7bb9 137 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.6E-4 T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS04375 7d5469b33f76bc6a2447c14a446b7bb9 137 PANTHER PTHR38779:SF1 1 132 2.5E-55 T 16-09-2016 BER92_RS05795 af99212bdc9fb46fb4e1461123dbeb25 142 SUPERFAMILY SSF54631 3 140 6.19E-33 T 16-09-2016 BER92_RS05795 af99212bdc9fb46fb4e1461123dbeb25 142 Pfam PF00571 CBS domain 13 61 3.1E-8 T 16-09-2016 IPR000644 CBS domain BER92_RS05795 af99212bdc9fb46fb4e1461123dbeb25 142 Pfam PF00571 CBS domain 72 125 6.7E-15 T 16-09-2016 IPR000644 CBS domain BER92_RS05795 af99212bdc9fb46fb4e1461123dbeb25 142 PANTHER PTHR11911 3 140 1.6E-33 T 16-09-2016 BER92_RS05795 af99212bdc9fb46fb4e1461123dbeb25 142 Gene3D G3DSA:3.10.580.10 10 125 3.6E-32 T 16-09-2016 BER92_RS05795 af99212bdc9fb46fb4e1461123dbeb25 142 SMART SM00116 79 126 4.0E-12 T 16-09-2016 IPR000644 CBS domain BER92_RS05795 af99212bdc9fb46fb4e1461123dbeb25 142 SMART SM00116 14 61 3.6E-6 T 16-09-2016 IPR000644 CBS domain BER92_RS05720 e716916e7c4958d8d9f2f4be492298b1 119 PANTHER PTHR38446 2 116 9.1E-37 T 16-09-2016 BER92_RS05720 e716916e7c4958d8d9f2f4be492298b1 119 PANTHER PTHR38446:SF1 2 116 9.1E-37 T 16-09-2016 BER92_RS05720 e716916e7c4958d8d9f2f4be492298b1 119 Pfam PF06993 Protein of unknown function (DUF1304) 11 114 5.2E-40 T 16-09-2016 IPR009732 Protein of unknown function DUF1304 BER92_RS06510 993121d2680a8e0b2b3614f09ebe87b3 713 PANTHER PTHR32552 1 713 4.2E-94 T 16-09-2016 BER92_RS06510 993121d2680a8e0b2b3614f09ebe87b3 713 Pfam PF00593 TonB dependent receptor 474 711 4.7E-25 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS06510 993121d2680a8e0b2b3614f09ebe87b3 713 SUPERFAMILY SSF56935 55 713 1.1E-105 T 16-09-2016 BER92_RS06510 993121d2680a8e0b2b3614f09ebe87b3 713 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 713 6.9E-85 T 16-09-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 BER92_RS06510 993121d2680a8e0b2b3614f09ebe87b3 713 PANTHER PTHR32552:SF10 1 713 4.2E-94 T 16-09-2016 BER92_RS06510 993121d2680a8e0b2b3614f09ebe87b3 713 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 696 713 - T 16-09-2016 IPR010917 TonB-dependent receptor, conserved site BER92_RS06510 993121d2680a8e0b2b3614f09ebe87b3 713 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 157 2.4E-17 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS06510 993121d2680a8e0b2b3614f09ebe87b3 713 Gene3D G3DSA:2.170.130.10 45 164 2.4E-32 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS06510 993121d2680a8e0b2b3614f09ebe87b3 713 Gene3D G3DSA:2.40.170.20 171 713 1.7E-102 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS14440 1c624f85f6b0e47b856d129fb5200106 346 Gene3D G3DSA:3.30.1150.10 231 343 2.2E-19 T 16-09-2016 BER92_RS14440 1c624f85f6b0e47b856d129fb5200106 346 TIGRFAM TIGR02794 tolA_full: protein TolA 18 339 4.8E-43 T 16-09-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 BER92_RS14440 1c624f85f6b0e47b856d129fb5200106 346 Pfam PF13103 TonB C terminal 257 329 5.9E-8 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS14440 1c624f85f6b0e47b856d129fb5200106 346 SUPERFAMILY SSF74653 235 342 1.22E-12 T 16-09-2016 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 PANTHER PTHR30177:SF4 210 485 2.5E-83 T 16-09-2016 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 Gene3D G3DSA:3.40.190.10 224 274 1.9E-41 T 16-09-2016 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 Gene3D G3DSA:3.40.190.10 20 118 1.9E-41 T 16-09-2016 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 312 482 1.8E-23 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 SUPERFAMILY SSF53850 23 274 6.23E-56 T 16-09-2016 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 PANTHER PTHR30177 210 485 2.5E-83 T 16-09-2016 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 Gene3D G3DSA:1.10.3720.10 282 472 9.2E-36 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 22 274 4.4E-59 T 16-09-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 SUPERFAMILY SSF161098 287 469 2.22E-34 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS18720 c4ba9711a7b88f5d5fc2622aece7d12f 490 Gene3D G3DSA:3.40.190.120 119 217 5.7E-30 T 16-09-2016 BER92_RS01440 feded48cb3b6c093a1be4230048e1b20 220 Pfam PF11769 Protein of unknown function (DUF3313) 19 215 6.2E-46 T 16-09-2016 IPR021747 Protein of unknown function DUF3313 BER92_RS02110 85265bd8b7a0aa83f3a7effd154ba731 158 PIRSF PIRSF029256 5 158 2.3E-62 T 16-09-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 BER92_RS02110 85265bd8b7a0aa83f3a7effd154ba731 158 Gene3D G3DSA:3.40.1280.10 6 157 7.3E-63 T 16-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER92_RS02110 85265bd8b7a0aa83f3a7effd154ba731 158 PANTHER PTHR12029 4 158 1.2E-70 T 16-09-2016 BER92_RS02110 85265bd8b7a0aa83f3a7effd154ba731 158 SUPERFAMILY SSF75217 6 156 1.44E-43 T 16-09-2016 IPR029028 Alpha/beta knot methyltransferases BER92_RS02110 85265bd8b7a0aa83f3a7effd154ba731 158 Pfam PF00588 SpoU rRNA Methylase family 6 145 3.3E-32 T 16-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BER92_RS02110 85265bd8b7a0aa83f3a7effd154ba731 158 PANTHER PTHR12029:SF31 4 158 1.2E-70 T 16-09-2016 BER92_RS02110 85265bd8b7a0aa83f3a7effd154ba731 158 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 6 155 33.099 T 16-09-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 BER92_RS18715 2899a816cc76d01bf7a962910fbae7e5 393 PANTHER PTHR11601 10 390 1.7E-81 T 16-09-2016 BER92_RS18715 2899a816cc76d01bf7a962910fbae7e5 393 PANTHER PTHR11601:SF31 10 390 1.7E-81 T 16-09-2016 BER92_RS18715 2899a816cc76d01bf7a962910fbae7e5 393 Gene3D G3DSA:3.40.640.10 65 292 9.0E-39 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS18715 2899a816cc76d01bf7a962910fbae7e5 393 Pfam PF00266 Aminotransferase class-V 69 242 2.7E-21 T 16-09-2016 IPR000192 Aminotransferase class V domain BER92_RS18715 2899a816cc76d01bf7a962910fbae7e5 393 SUPERFAMILY SSF53383 15 390 2.01E-54 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS09420 66844f8e6e93f989b9aebea10bbe09ab 289 Gene3D G3DSA:3.90.226.10 73 261 9.7E-31 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS09420 66844f8e6e93f989b9aebea10bbe09ab 289 PANTHER PTHR11941 73 283 1.7E-41 T 16-09-2016 BER92_RS09420 66844f8e6e93f989b9aebea10bbe09ab 289 PANTHER PTHR11941:SF76 73 283 1.7E-41 T 16-09-2016 BER92_RS09420 66844f8e6e93f989b9aebea10bbe09ab 289 SUPERFAMILY SSF52096 73 267 5.69E-34 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS09420 66844f8e6e93f989b9aebea10bbe09ab 289 Pfam PF00378 Enoyl-CoA hydratase/isomerase 73 240 7.2E-20 T 16-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 PANTHER PTHR11879:SF11 1 399 2.6E-245 T 16-09-2016 BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 PANTHER PTHR11879 1 399 2.6E-245 T 16-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 Pfam PF00155 Aminotransferase class I and II 29 394 2.0E-78 T 16-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 Gene3D G3DSA:3.40.640.10 48 318 1.4E-103 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 PRINTS PR00799 Aspartate aminotransferase signature 276 301 6.8E-35 T 16-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 PRINTS PR00799 Aspartate aminotransferase signature 208 220 6.8E-35 T 16-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 PRINTS PR00799 Aspartate aminotransferase signature 177 196 6.8E-35 T 16-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 PRINTS PR00799 Aspartate aminotransferase signature 343 361 6.8E-35 T 16-09-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 SUPERFAMILY SSF53383 2 396 2.04E-113 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS01975 a6ab092f31f66185f6501dbe509c4674 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 246 259 - T 16-09-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 BER92_RS16115 e0001789a554995e2d9d1b30811828ab 94 Pfam PF13223 Protein of unknown function (DUF4031) 3 79 3.0E-29 T 16-09-2016 IPR025109 Domain of unknown function DUF4031 BER92_RS12175 e13f5f2783799e49aaea811197bfae7f 319 PANTHER PTHR21091 1 316 2.7E-96 T 16-09-2016 BER92_RS12175 e13f5f2783799e49aaea811197bfae7f 319 Pfam PF02574 Homocysteine S-methyltransferase 25 316 5.5E-75 T 16-09-2016 IPR003726 Homocysteine-binding domain BER92_RS12175 e13f5f2783799e49aaea811197bfae7f 319 Gene3D G3DSA:3.20.20.330 12 316 2.5E-93 T 16-09-2016 IPR003726 Homocysteine-binding domain BER92_RS12175 e13f5f2783799e49aaea811197bfae7f 319 SUPERFAMILY SSF82282 19 316 6.15E-85 T 16-09-2016 IPR003726 Homocysteine-binding domain BER92_RS12175 e13f5f2783799e49aaea811197bfae7f 319 PANTHER PTHR21091:SF123 1 316 2.7E-96 T 16-09-2016 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.345 T 16-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 16-09-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 SUPERFAMILY SSF54919 1 140 2.23E-55 T 16-09-2016 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 Pfam PF00334 Nucleoside diphosphate kinase 4 137 1.4E-53 T 16-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 5.8E-41 T 16-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 5.8E-41 T 16-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 5.8E-41 T 16-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 5.8E-41 T 16-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 5.8E-41 T 16-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 SMART SM00562 3 140 1.0E-83 T 16-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 PANTHER PTHR11349 1 140 7.2E-71 T 16-09-2016 BER92_RS10095 10ffb9406244f13436ae0a009d3a2301 141 Gene3D G3DSA:3.30.70.141 1 140 1.3E-57 T 16-09-2016 BER92_RS00470 115147c9f36b753a024a10611a043f88 469 PANTHER PTHR40254 1 469 5.6E-123 T 16-09-2016 BER92_RS00470 115147c9f36b753a024a10611a043f88 469 Gene3D G3DSA:3.50.50.60 2 196 4.4E-9 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS00470 115147c9f36b753a024a10611a043f88 469 PANTHER PTHR40254:SF1 1 469 5.6E-123 T 16-09-2016 BER92_RS00470 115147c9f36b753a024a10611a043f88 469 Gene3D G3DSA:3.50.50.60 197 233 2.7E-6 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS00470 115147c9f36b753a024a10611a043f88 469 Gene3D G3DSA:3.50.50.60 302 451 2.7E-6 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS00470 115147c9f36b753a024a10611a043f88 469 Pfam PF13454 FAD-NAD(P)-binding 7 149 3.1E-23 T 16-09-2016 BER92_RS00470 115147c9f36b753a024a10611a043f88 469 SUPERFAMILY SSF51905 1 218 1.3E-14 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS00470 115147c9f36b753a024a10611a043f88 469 SUPERFAMILY SSF51905 274 446 1.99E-5 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS00470 115147c9f36b753a024a10611a043f88 469 SUPERFAMILY SSF51905 186 239 1.99E-5 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS13345 027af24a51630252516a5bce5e07adfb 148 PANTHER PTHR11908:SF71 63 148 2.3E-33 T 16-09-2016 BER92_RS13345 027af24a51630252516a5bce5e07adfb 148 SUPERFAMILY SSF56003 15 142 3.93E-31 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS13345 027af24a51630252516a5bce5e07adfb 148 Gene3D G3DSA:3.30.365.10 18 63 2.6E-8 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS13345 027af24a51630252516a5bce5e07adfb 148 PANTHER PTHR11908 63 148 2.3E-33 T 16-09-2016 BER92_RS13345 027af24a51630252516a5bce5e07adfb 148 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 18 62 2.1E-6 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS13345 027af24a51630252516a5bce5e07adfb 148 Gene3D G3DSA:3.30.365.10 64 143 2.3E-19 T 16-09-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BER92_RS18410 5a99b56d7422bdc9924aa70009a955c3 155 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 10 154 32.484 T 16-09-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 BER92_RS18410 5a99b56d7422bdc9924aa70009a955c3 155 TIGRFAM TIGR00576 dut: dUTP diphosphatase 21 153 6.5E-44 T 16-09-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 BER92_RS18410 5a99b56d7422bdc9924aa70009a955c3 155 SUPERFAMILY SSF51283 9 154 2.36E-48 T 16-09-2016 IPR029054 dUTPase-like BER92_RS18410 5a99b56d7422bdc9924aa70009a955c3 155 PANTHER PTHR11241 10 154 8.8E-47 T 16-09-2016 BER92_RS18410 5a99b56d7422bdc9924aa70009a955c3 155 Pfam PF00692 dUTPase 21 153 1.1E-32 T 16-09-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 BER92_RS18410 5a99b56d7422bdc9924aa70009a955c3 155 Gene3D G3DSA:2.70.40.10 9 154 8.8E-48 T 16-09-2016 IPR029054 dUTPase-like BER92_RS15665 40d480b79f4269928e86fe28815cd724 583 Pfam PF13692 Glycosyl transferases group 1 201 336 1.0E-8 T 16-09-2016 BER92_RS15665 40d480b79f4269928e86fe28815cd724 583 SUPERFAMILY SSF53756 6 87 5.08E-20 T 16-09-2016 BER92_RS15665 40d480b79f4269928e86fe28815cd724 583 SUPERFAMILY SSF53756 140 372 5.08E-20 T 16-09-2016 BER92_RS07930 f8c6b585700b0a9fc5ed851bee8896fc 167 SUPERFAMILY SSF74982 14 143 8.5E-49 T 16-09-2016 IPR023620 Small protein B BER92_RS07930 f8c6b585700b0a9fc5ed851bee8896fc 167 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 19 143 2.0E-62 T 16-09-2016 IPR000037 SsrA-binding protein GO:0003723 BER92_RS07930 f8c6b585700b0a9fc5ed851bee8896fc 167 TIGRFAM TIGR00086 smpB: SsrA-binding protein 19 160 4.9E-52 T 16-09-2016 IPR000037 SsrA-binding protein GO:0003723 BER92_RS07930 f8c6b585700b0a9fc5ed851bee8896fc 167 PANTHER PTHR30308 6 166 6.7E-79 T 16-09-2016 BER92_RS07930 f8c6b585700b0a9fc5ed851bee8896fc 167 Gene3D G3DSA:2.40.280.10 17 138 4.5E-48 T 16-09-2016 IPR023620 Small protein B BER92_RS07930 f8c6b585700b0a9fc5ed851bee8896fc 167 Hamap MF_00023 SsrA-binding protein [smpB]. 1 166 69.85 T 16-09-2016 IPR000037 SsrA-binding protein GO:0003723 BER92_RS07930 f8c6b585700b0a9fc5ed851bee8896fc 167 ProSitePatterns PS01317 SsrA-binding protein. 37 49 - T 16-09-2016 IPR020081 SsrA-binding protein, conserved site BER92_RS07930 f8c6b585700b0a9fc5ed851bee8896fc 167 Pfam PF01668 SmpB protein 18 81 1.5E-26 T 16-09-2016 IPR000037 SsrA-binding protein GO:0003723 BER92_RS07930 f8c6b585700b0a9fc5ed851bee8896fc 167 PANTHER PTHR30308:SF2 6 166 6.7E-79 T 16-09-2016 BER92_RS17635 b1bace7f8cf2a7de08fe0997c989f479 113 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 7 101 4.1E-7 T 16-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 BER92_RS17635 b1bace7f8cf2a7de08fe0997c989f479 113 SUPERFAMILY SSF69754 1 96 1.05E-9 T 16-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 BER92_RS17635 b1bace7f8cf2a7de08fe0997c989f479 113 Gene3D G3DSA:3.30.160.100 1 103 3.4E-10 T 16-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 BER92_RS08530 502f41c8de7d17ebbc33247dd5face2b 458 SUPERFAMILY SSF51556 56 379 7.23E-69 T 16-09-2016 IPR032466 Metal-dependent hydrolase BER92_RS08530 502f41c8de7d17ebbc33247dd5face2b 458 Pfam PF01979 Amidohydrolase family 53 432 8.4E-28 T 16-09-2016 IPR006680 Amidohydrolase-related GO:0016787 BER92_RS08530 502f41c8de7d17ebbc33247dd5face2b 458 SUPERFAMILY SSF51338 368 451 2.27E-10 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS08530 502f41c8de7d17ebbc33247dd5face2b 458 Gene3D G3DSA:3.20.20.140 70 398 2.1E-67 T 16-09-2016 BER92_RS08530 502f41c8de7d17ebbc33247dd5face2b 458 PANTHER PTHR11271:SF4 22 457 1.1E-188 T 16-09-2016 IPR010252 Formiminoglutamate deiminase BER92_RS08530 502f41c8de7d17ebbc33247dd5face2b 458 PANTHER PTHR11271 22 457 1.1E-188 T 16-09-2016 BER92_RS08530 502f41c8de7d17ebbc33247dd5face2b 458 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 9 456 2.2E-210 T 16-09-2016 IPR010252 Formiminoglutamate deiminase BER92_RS08530 502f41c8de7d17ebbc33247dd5face2b 458 Gene3D G3DSA:2.30.40.10 24 69 1.3E-5 T 16-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 BER92_RS18165 12b5447059eaa331af8d3f74c10f45e7 185 Gene3D G3DSA:3.30.1380.10 1 184 7.1E-63 T 16-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain BER92_RS18165 12b5447059eaa331af8d3f74c10f45e7 185 PANTHER PTHR22935:SF67 19 185 1.6E-76 T 16-09-2016 BER92_RS18165 12b5447059eaa331af8d3f74c10f45e7 185 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 1 183 26.259 T 16-09-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 BER92_RS18165 12b5447059eaa331af8d3f74c10f45e7 185 SUPERFAMILY SSF55166 1 183 6.67E-55 T 16-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain BER92_RS18165 12b5447059eaa331af8d3f74c10f45e7 185 Pfam PF01427 D-ala-D-ala dipeptidase 2 176 5.8E-34 T 16-09-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 BER92_RS18165 12b5447059eaa331af8d3f74c10f45e7 185 PANTHER PTHR22935 19 185 1.6E-76 T 16-09-2016 BER92_RS18165 12b5447059eaa331af8d3f74c10f45e7 185 PIRSF PIRSF026671 1 185 1.4E-63 T 16-09-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 PANTHER PTHR22573 6 447 2.4E-186 T 16-09-2016 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 PANTHER PTHR22573:SF18 6 447 2.4E-186 T 16-09-2016 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 Gene3D G3DSA:3.40.120.10 247 360 1.7E-38 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 91 100 - T 16-09-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 255 365 1.5E-24 T 16-09-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 SUPERFAMILY SSF53738 255 359 6.67E-31 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 SUPERFAMILY SSF55957 364 447 2.96E-19 T 16-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 370 446 5.2E-11 T 16-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 201 214 2.2E-28 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 230 245 2.2E-28 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 167 186 2.2E-28 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 90 104 2.2E-28 T 16-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 SUPERFAMILY SSF53738 4 174 8.63E-34 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 5 131 1.1E-33 T 16-09-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 Gene3D G3DSA:3.40.120.10 5 120 2.7E-32 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 151 250 1.6E-22 T 16-09-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 SUPERFAMILY SSF53738 151 253 2.08E-28 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 Gene3D G3DSA:3.40.120.10 169 246 3.1E-28 T 16-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS15585 1748962622a8cb9192f9c8cee9afad1e 448 Gene3D G3DSA:3.30.310.50 367 447 2.3E-17 T 16-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BER92_RS06245 4f6f864935145857d546ffab14c0a3c2 528 PANTHER PTHR11785:SF358 446 528 0.0 T 16-09-2016 BER92_RS06245 4f6f864935145857d546ffab14c0a3c2 528 PANTHER PTHR11785 446 528 0.0 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS06245 4f6f864935145857d546ffab14c0a3c2 528 PANTHER PTHR11785:SF358 9 404 0.0 T 16-09-2016 BER92_RS06245 4f6f864935145857d546ffab14c0a3c2 528 PANTHER PTHR11785 9 404 0.0 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS06245 4f6f864935145857d546ffab14c0a3c2 528 PIRSF PIRSF006060 1 461 5.2E-74 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS06245 4f6f864935145857d546ffab14c0a3c2 528 Pfam PF13520 Amino acid permease 16 424 3.2E-42 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS10705 cb34d40f03d462d77dfe23306eb475c6 243 SUPERFAMILY SSF48317 30 227 7.72E-36 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS10705 cb34d40f03d462d77dfe23306eb475c6 243 SMART SM00014 103 213 4.5E-18 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS10705 cb34d40f03d462d77dfe23306eb475c6 243 PANTHER PTHR14969 37 221 1.2E-29 T 16-09-2016 BER92_RS10705 cb34d40f03d462d77dfe23306eb475c6 243 Pfam PF01569 PAP2 superfamily 108 216 1.7E-19 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS10705 cb34d40f03d462d77dfe23306eb475c6 243 Gene3D G3DSA:1.20.144.10 52 214 2.1E-27 T 16-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER92_RS14820 2b8e50befa42cfa9538ee183ef0b994a 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3 286 6.6E-100 T 16-09-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 BER92_RS14820 2b8e50befa42cfa9538ee183ef0b994a 316 Pfam PF02401 LytB protein 3 284 5.1E-92 T 16-09-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 BER92_RS14820 2b8e50befa42cfa9538ee183ef0b994a 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 288 38.725 T 16-09-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 BER92_RS14820 2b8e50befa42cfa9538ee183ef0b994a 316 PANTHER PTHR30426 1 314 2.2E-158 T 16-09-2016 BER92_RS13180 9d549702abfeb5cc554fcde9a7f2f116 353 Gene3D G3DSA:3.20.20.80 33 342 6.5E-94 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS13180 9d549702abfeb5cc554fcde9a7f2f116 353 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 62 314 8.8E-53 T 16-09-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BER92_RS13180 9d549702abfeb5cc554fcde9a7f2f116 353 SUPERFAMILY SSF51445 34 337 1.96E-78 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS13180 9d549702abfeb5cc554fcde9a7f2f116 353 PANTHER PTHR34142 1 343 7.2E-85 T 16-09-2016 BER92_RS13180 9d549702abfeb5cc554fcde9a7f2f116 353 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 159 168 - T 16-09-2016 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 BER92_RS16190 b1f9544c36888c8aaedb9a56bfec499c 1944 Gene3D G3DSA:1.25.10.10 132 524 6.2E-8 T 16-09-2016 IPR011989 Armadillo-like helical BER92_RS16190 b1f9544c36888c8aaedb9a56bfec499c 1944 SUPERFAMILY SSF48371 410 636 8.06E-10 T 16-09-2016 IPR016024 Armadillo-type fold GO:0005488 BER92_RS16190 b1f9544c36888c8aaedb9a56bfec499c 1944 SUPERFAMILY SSF48371 121 480 3.39E-23 T 16-09-2016 IPR016024 Armadillo-type fold GO:0005488 BER92_RS08085 a4cab3f27913a2b6ebdb66cdc3778243 207 SUPERFAMILY SSF53098 35 201 6.96E-42 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS08085 a4cab3f27913a2b6ebdb66cdc3778243 207 Gene3D G3DSA:3.30.420.10 36 195 5.1E-37 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS08085 a4cab3f27913a2b6ebdb66cdc3778243 207 PANTHER PTHR32552 1 205 1.0E-67 T 16-09-2016 BER92_RS08085 a4cab3f27913a2b6ebdb66cdc3778243 207 Pfam PF00665 Integrase core domain 42 156 1.4E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS00950 42782b045a5de4c2975eb00d58faa4ef 158 PANTHER PTHR34473:SF2 2 156 1.4E-45 T 16-09-2016 BER92_RS00950 42782b045a5de4c2975eb00d58faa4ef 158 PANTHER PTHR34473 2 156 1.4E-45 T 16-09-2016 BER92_RS00950 42782b045a5de4c2975eb00d58faa4ef 158 Pfam PF03703 Bacterial PH domain 71 147 7.5E-14 T 16-09-2016 IPR005182 Domain of unknown function DUF304 BER92_RS13870 24867ade51f29e1ee73673bf5732b9df 158 SUPERFAMILY SSF49764 23 146 1.19E-38 T 16-09-2016 IPR008978 HSP20-like chaperone BER92_RS13870 24867ade51f29e1ee73673bf5732b9df 158 Pfam PF00011 Hsp20/alpha crystallin family 47 146 1.1E-24 T 16-09-2016 IPR002068 Alpha crystallin/Hsp20 domain BER92_RS13870 24867ade51f29e1ee73673bf5732b9df 158 PANTHER PTHR11527 16 154 4.3E-46 T 16-09-2016 IPR031107 Small heat shock protein HSP20 BER92_RS13870 24867ade51f29e1ee73673bf5732b9df 158 Gene3D G3DSA:2.60.40.790 10 146 3.6E-43 T 16-09-2016 IPR008978 HSP20-like chaperone BER92_RS13870 24867ade51f29e1ee73673bf5732b9df 158 PANTHER PTHR11527:SF118 16 154 4.3E-46 T 16-09-2016 BER92_RS06770 39befded233415f573298c2a12383f93 265 Gene3D G3DSA:1.10.12.10 208 265 2.3E-19 T 16-09-2016 IPR014748 Crontonase, C-terminal BER92_RS06770 39befded233415f573298c2a12383f93 265 PANTHER PTHR11941:SF89 1 262 1.2E-179 T 16-09-2016 BER92_RS06770 39befded233415f573298c2a12383f93 265 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 16-09-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 BER92_RS06770 39befded233415f573298c2a12383f93 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 264 2.2E-57 T 16-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 BER92_RS06770 39befded233415f573298c2a12383f93 265 SUPERFAMILY SSF52096 12 265 5.33E-78 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS06770 39befded233415f573298c2a12383f93 265 Gene3D G3DSA:3.90.226.10 12 203 2.2E-65 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS06770 39befded233415f573298c2a12383f93 265 PANTHER PTHR11941 1 262 1.2E-179 T 16-09-2016 BER92_RS13880 2eb3091285ff795d4375a0ad91fb5636 186 Gene3D G3DSA:1.20.1260.10 35 181 2.0E-49 T 16-09-2016 IPR012347 Ferritin-related BER92_RS13880 2eb3091285ff795d4375a0ad91fb5636 186 PIRSF PIRSF018063 19 186 1.1E-62 T 16-09-2016 IPR014490 Uncharacterised conserved protein UCP018063, ferritin fold BER92_RS13880 2eb3091285ff795d4375a0ad91fb5636 186 Pfam PF00210 Ferritin-like domain 45 181 3.4E-26 T 16-09-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BER92_RS13880 2eb3091285ff795d4375a0ad91fb5636 186 SUPERFAMILY SSF47240 37 181 1.1E-35 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS13880 2eb3091285ff795d4375a0ad91fb5636 186 PANTHER PTHR30295:SF1 23 183 1.7E-58 T 16-09-2016 BER92_RS13880 2eb3091285ff795d4375a0ad91fb5636 186 PANTHER PTHR30295 23 183 1.7E-58 T 16-09-2016 BER92_RS11695 82aafe74ae97520939743c4a5bf1df92 391 Pfam PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) 12 299 9.7E-81 T 16-09-2016 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit BER92_RS11695 82aafe74ae97520939743c4a5bf1df92 391 TIGRFAM TIGR01834 PHA_synth_III_E: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit 11 311 1.8E-106 T 16-09-2016 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit BER92_RS00965 4cebf5388354f845a81f3e89ae910823 274 PANTHER PTHR10859 7 104 3.2E-17 T 16-09-2016 BER92_RS00965 4cebf5388354f845a81f3e89ae910823 274 PANTHER PTHR10859:SF99 7 104 3.2E-17 T 16-09-2016 BER92_RS00965 4cebf5388354f845a81f3e89ae910823 274 Pfam PF00535 Glycosyl transferase family 2 14 108 5.8E-13 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS00965 4cebf5388354f845a81f3e89ae910823 274 SUPERFAMILY SSF53448 7 157 3.09E-20 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS00965 4cebf5388354f845a81f3e89ae910823 274 Gene3D G3DSA:3.90.550.10 9 117 2.4E-8 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS05920 009295a63ca63319409ac36744b5100b 265 Gene3D G3DSA:3.30.470.10 20 107 2.3E-6 T 16-09-2016 BER92_RS05920 009295a63ca63319409ac36744b5100b 265 Pfam PF01063 Amino-transferase class IV 25 229 5.8E-31 T 16-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 BER92_RS05920 009295a63ca63319409ac36744b5100b 265 Gene3D G3DSA:3.20.10.10 130 230 3.1E-14 T 16-09-2016 BER92_RS05920 009295a63ca63319409ac36744b5100b 265 SUPERFAMILY SSF56752 10 238 4.19E-37 T 16-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 BER92_RS14155 ffabe931f2d5c23fa883568aa9e87446 150 Pfam PF00075 RNase H 2 140 1.2E-46 T 16-09-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 BER92_RS14155 ffabe931f2d5c23fa883568aa9e87446 150 Gene3D G3DSA:3.30.420.10 2 141 8.8E-56 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS14155 ffabe931f2d5c23fa883568aa9e87446 150 PANTHER PTHR10642 3 138 1.3E-55 T 16-09-2016 BER92_RS14155 ffabe931f2d5c23fa883568aa9e87446 150 Hamap MF_00042 Ribonuclease H [rnhA]. 1 149 36.424 T 16-09-2016 IPR022892 Ribonuclease H GO:0004523 BER92_RS14155 ffabe931f2d5c23fa883568aa9e87446 150 SUPERFAMILY SSF53098 2 138 2.15E-54 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11685 c4759da77c113a89a1400797c26621da 65 Pfam PF04024 PspC domain 6 62 3.9E-18 T 16-09-2016 IPR007168 Phage shock protein, PspC, N-terminal BER92_RS11685 c4759da77c113a89a1400797c26621da 65 PANTHER PTHR33885 3 65 6.3E-21 T 16-09-2016 BER92_RS12895 ef45a5cd0afe67fd9b5c710757e6870d 254 PANTHER PTHR30046 1 248 1.0E-130 T 16-09-2016 BER92_RS12895 ef45a5cd0afe67fd9b5c710757e6870d 254 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 77 90 1.6E-24 T 16-09-2016 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BER92_RS12895 ef45a5cd0afe67fd9b5c710757e6870d 254 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 165 177 1.6E-24 T 16-09-2016 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BER92_RS12895 ef45a5cd0afe67fd9b5c710757e6870d 254 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 117 130 1.6E-24 T 16-09-2016 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BER92_RS12895 ef45a5cd0afe67fd9b5c710757e6870d 254 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 24 34 1.6E-24 T 16-09-2016 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BER92_RS12895 ef45a5cd0afe67fd9b5c710757e6870d 254 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 97 112 1.6E-24 T 16-09-2016 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BER92_RS12895 ef45a5cd0afe67fd9b5c710757e6870d 254 PANTHER PTHR30046:SF2 1 248 1.0E-130 T 16-09-2016 BER92_RS12895 ef45a5cd0afe67fd9b5c710757e6870d 254 Pfam PF01514 Secretory protein of YscJ/FliF family 7 186 3.6E-27 T 16-09-2016 IPR006182 Secretory protein YscJ/FliF BER92_RS12895 ef45a5cd0afe67fd9b5c710757e6870d 254 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 5 191 8.9E-70 T 16-09-2016 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BER92_RS16095 f08f141077d82e45eb9ab6ab96fba225 154 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 10 136 35.161 T 16-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 BER92_RS16095 f08f141077d82e45eb9ab6ab96fba225 154 SUPERFAMILY SSF51316 15 138 8.37E-52 T 16-09-2016 IPR011057 Mss4-like BER92_RS16095 f08f141077d82e45eb9ab6ab96fba225 154 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 17 136 2.1E-44 T 16-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 BER92_RS16095 f08f141077d82e45eb9ab6ab96fba225 154 Gene3D G3DSA:2.170.150.20 11 138 4.7E-52 T 16-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 BER92_RS16095 f08f141077d82e45eb9ab6ab96fba225 154 PANTHER PTHR10173:SF18 25 136 5.3E-49 T 16-09-2016 BER92_RS16095 f08f141077d82e45eb9ab6ab96fba225 154 PANTHER PTHR10173 25 136 5.3E-49 T 16-09-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 BER92_RS16095 f08f141077d82e45eb9ab6ab96fba225 154 Pfam PF01641 SelR domain 19 134 4.3E-46 T 16-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 BER92_RS00225 364fa6d3520190bacbc16840f4f5399a 316 Pfam PF02687 FtsX-like permease family 190 310 3.1E-9 T 16-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 BER92_RS00225 364fa6d3520190bacbc16840f4f5399a 316 PANTHER PTHR30489 33 315 1.1E-43 T 16-09-2016 BER92_RS00225 364fa6d3520190bacbc16840f4f5399a 316 PIRSF PIRSF003097 18 310 2.7E-55 T 16-09-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 BER92_RS12165 2dad897e56163fb6f08602c294272888 80 Pfam PF02311 AraC-like ligand binding domain 21 65 3.8E-8 T 16-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 BER92_RS12165 2dad897e56163fb6f08602c294272888 80 Gene3D G3DSA:2.60.120.280 23 69 3.9E-5 T 16-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 BER92_RS12165 2dad897e56163fb6f08602c294272888 80 SUPERFAMILY SSF51215 24 68 2.35E-6 T 16-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 PANTHER PTHR10434:SF15 346 637 2.7E-149 T 16-09-2016 BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 SUPERFAMILY SSF103473 10 438 4.32E-25 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 Pfam PF07690 Major Facilitator Superfamily 24 382 7.9E-18 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 Gene3D G3DSA:1.20.1250.20 17 189 3.5E-11 T 16-09-2016 BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 Gene3D G3DSA:3.40.1130.10 457 612 1.3E-16 T 16-09-2016 BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 SUPERFAMILY SSF69593 426 587 6.67E-27 T 16-09-2016 BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 Pfam PF01553 Acyltransferase 461 581 7.6E-24 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 Gene3D G3DSA:1.20.1250.20 226 437 1.2E-4 T 16-09-2016 BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 SMART SM00563 469 585 3.8E-27 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS16335 a28718936059f97d5d636247c32d3d0f 640 PANTHER PTHR10434 346 637 2.7E-149 T 16-09-2016 BER92_RS19295 1a009019c1306aed09834c596565c144 237 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 1 225 1.2E-16 T 16-09-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BER92_RS19295 1a009019c1306aed09834c596565c144 237 Gene3D G3DSA:3.20.20.190 3 231 1.5E-41 T 16-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 BER92_RS19295 1a009019c1306aed09834c596565c144 237 PANTHER PTHR23344 3 232 1.8E-47 T 16-09-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 BER92_RS19295 1a009019c1306aed09834c596565c144 237 PANTHER PTHR23344:SF7 3 232 1.8E-47 T 16-09-2016 BER92_RS19295 1a009019c1306aed09834c596565c144 237 SUPERFAMILY SSF51695 3 231 1.49E-32 T 16-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 Gene3D G3DSA:3.40.50.300 138 310 1.1E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 Pfam PF02954 Bacterial regulatory protein, Fis family 444 483 1.4E-12 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 SUPERFAMILY SSF46689 433 486 2.51E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 SUPERFAMILY SSF46689 350 393 2.51E-12 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 Gene3D G3DSA:1.10.8.60 311 383 6.4E-22 T 16-09-2016 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 Pfam PF06490 Flagellar regulatory protein FleQ 5 120 1.5E-20 T 16-09-2016 IPR010518 Flagellar regulatory FleQ BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 SUPERFAMILY SSF52540 140 379 1.62E-71 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 16-09-2016 IPR025944 Sigma-54 interaction domain, conserved site BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 466 486 5.5E-12 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 466 5.5E-12 T 16-09-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 PANTHER PTHR32071 411 494 1.6E-189 T 16-09-2016 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 PANTHER PTHR32071 1 388 1.6E-189 T 16-09-2016 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 162 175 - T 16-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 Gene3D G3DSA:1.10.10.60 428 486 6.3E-15 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 16-09-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 Pfam PF00158 Sigma-54 interaction domain 140 305 8.1E-71 T 16-09-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 PANTHER PTHR32071:SF36 411 494 1.6E-189 T 16-09-2016 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 PANTHER PTHR32071:SF36 1 388 1.6E-189 T 16-09-2016 BER92_RS10340 ad2d857a805caec85f57d1ab1b6ccf5c 494 SMART SM00382 158 305 8.3E-12 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS09875 1ee5f65cc81e0bfdde5898d9c62c8a10 444 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 16 442 6.1E-139 T 16-09-2016 IPR010263 Type VI secretion protein, VC_A0114 BER92_RS09875 1ee5f65cc81e0bfdde5898d9c62c8a10 444 PANTHER PTHR35566:SF1 1 444 5.3E-101 T 16-09-2016 BER92_RS09875 1ee5f65cc81e0bfdde5898d9c62c8a10 444 PANTHER PTHR35566 1 444 5.3E-101 T 16-09-2016 BER92_RS09875 1ee5f65cc81e0bfdde5898d9c62c8a10 444 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 2 443 2.4E-143 T 16-09-2016 IPR010263 Type VI secretion protein, VC_A0114 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PANTHER PTHR30009 1 421 1.2E-285 T 16-09-2016 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PANTHER PTHR30009 466 644 1.2E-285 T 16-09-2016 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 355 372 2.2E-47 T 16-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 398 417 2.2E-47 T 16-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 2.2E-47 T 16-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 627 640 2.2E-47 T 16-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 2.2E-47 T 16-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 2.2E-47 T 16-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 Pfam PF01578 Cytochrome C assembly protein 89 295 1.5E-52 T 16-09-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 2.7E-92 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 2.7E-92 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.7E-92 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 2.7E-92 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 2.7E-92 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.7E-92 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 2.7E-92 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 2.7E-92 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 634 3.3E-116 T 16-09-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PANTHER PTHR30009:SF0 1 421 1.2E-285 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 PANTHER PTHR30009:SF0 466 644 1.2E-285 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08860 d058ca8b6ac4416bf80449e260601e76 645 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 636 4.2E-222 T 16-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS01815 ca46c22f2f7e60c5bb489f5944508eae 161 TIGRFAM TIGR01754 flav_RNR: putative ribonucleotide reductase-associated flavodoxin 1 144 2.5E-57 T 16-09-2016 IPR010088 Ribonucleotide reductase-associated flavodoxin, putative BER92_RS01815 ca46c22f2f7e60c5bb489f5944508eae 161 Gene3D G3DSA:3.40.50.360 3 146 8.2E-22 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS01815 ca46c22f2f7e60c5bb489f5944508eae 161 SUPERFAMILY SSF52218 1 148 1.3E-22 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS01815 ca46c22f2f7e60c5bb489f5944508eae 161 Pfam PF00258 Flavodoxin 8 114 2.0E-7 T 16-09-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 PANTHER PTHR10584 1 312 3.6E-69 T 16-09-2016 BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 261 274 - T 16-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 Gene3D G3DSA:3.40.1190.20 2 311 2.8E-67 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 SUPERFAMILY SSF53613 1 311 9.35E-60 T 16-09-2016 IPR029056 Ribokinase-like BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 Pfam PF00294 pfkB family carbohydrate kinase 1 310 1.1E-45 T 16-09-2016 IPR011611 Carbohydrate kinase PfkB BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 PRINTS PR00990 Ribokinase signature 171 186 3.4E-18 T 16-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 PRINTS PR00990 Ribokinase signature 224 235 3.4E-18 T 16-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 PRINTS PR00990 Ribokinase signature 6 27 3.4E-18 T 16-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 PRINTS PR00990 Ribokinase signature 102 115 3.4E-18 T 16-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 BER92_RS04690 aa47563a8486327c38caa7784cd40a1e 318 PANTHER PTHR10584:SF184 1 312 3.6E-69 T 16-09-2016 BER92_RS06240 76ef8d3029dadcf3ecce93be31a89dc4 620 PANTHER PTHR33361 1 596 3.8E-243 T 16-09-2016 BER92_RS06240 76ef8d3029dadcf3ecce93be31a89dc4 620 Pfam PF05960 Bacterial protein of unknown function (DUF885) 75 590 1.0E-150 T 16-09-2016 IPR010281 Protein of unknown function DUF885 BER92_RS06240 76ef8d3029dadcf3ecce93be31a89dc4 620 PANTHER PTHR33361:SF6 1 596 3.8E-243 T 16-09-2016 BER92_RS07435 716bac79847ab666731d3d23932d73bf 711 Pfam PF05567 Neisseria PilC beta-propeller domain 243 535 3.4E-53 T 16-09-2016 IPR008707 PilC beta-propeller domain BER92_RS07435 716bac79847ab666731d3d23932d73bf 711 SUPERFAMILY SSF50998 220 503 1.78E-9 T 16-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BER92_RS17460 4ae5e306481408d27045c1bb46137d2d 172 Gene3D G3DSA:2.60.120.10 64 124 1.1E-5 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS17460 4ae5e306481408d27045c1bb46137d2d 172 SUPERFAMILY SSF51182 74 124 2.77E-8 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS01105 d54802cf29a23d9d97601d3ff56bdadd 258 PANTHER PTHR30136:SF13 11 248 7.6E-85 T 16-09-2016 BER92_RS01105 d54802cf29a23d9d97601d3ff56bdadd 258 SUPERFAMILY SSF55781 74 249 1.83E-30 T 16-09-2016 IPR029016 GAF domain-like BER92_RS01105 d54802cf29a23d9d97601d3ff56bdadd 258 PANTHER PTHR30136 11 248 7.6E-85 T 16-09-2016 BER92_RS01105 d54802cf29a23d9d97601d3ff56bdadd 258 SUPERFAMILY SSF46785 12 79 1.1E-14 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS01105 d54802cf29a23d9d97601d3ff56bdadd 258 SMART SM00346 10 99 1.3E-16 T 16-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BER92_RS01105 d54802cf29a23d9d97601d3ff56bdadd 258 Pfam PF01614 Bacterial transcriptional regulator 131 245 1.9E-9 T 16-09-2016 IPR014757 Transcription regulator IclR, C-terminal BER92_RS01105 d54802cf29a23d9d97601d3ff56bdadd 258 Pfam PF09339 IclR helix-turn-helix domain 12 62 2.4E-12 T 16-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BER92_RS01105 d54802cf29a23d9d97601d3ff56bdadd 258 Gene3D G3DSA:3.30.450.40 85 253 8.6E-31 T 16-09-2016 IPR029016 GAF domain-like BER92_RS01105 d54802cf29a23d9d97601d3ff56bdadd 258 Gene3D G3DSA:1.10.10.10 8 79 3.7E-20 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS03580 e276116fec6f1596358945b4012298b5 203 SUPERFAMILY SSF52540 2 186 6.85E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03580 e276116fec6f1596358945b4012298b5 203 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 181 1.1E-70 T 16-09-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 BER92_RS03580 e276116fec6f1596358945b4012298b5 203 Gene3D G3DSA:3.30.63.10 33 84 4.9E-22 T 16-09-2016 BER92_RS03580 e276116fec6f1596358945b4012298b5 203 SMART SM00072 2 184 9.3E-58 T 16-09-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BER92_RS03580 e276116fec6f1596358945b4012298b5 203 Pfam PF00625 Guanylate kinase 4 180 4.2E-47 T 16-09-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BER92_RS03580 e276116fec6f1596358945b4012298b5 203 PANTHER PTHR23117 1 202 4.5E-84 T 16-09-2016 BER92_RS03580 e276116fec6f1596358945b4012298b5 203 Gene3D G3DSA:3.40.50.300 2 25 5.4E-44 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03580 e276116fec6f1596358945b4012298b5 203 Gene3D G3DSA:3.40.50.300 85 200 5.4E-44 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03580 e276116fec6f1596358945b4012298b5 203 Hamap MF_00328 Guanylate kinase [gmk]. 1 184 35.549 T 16-09-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 BER92_RS03580 e276116fec6f1596358945b4012298b5 203 ProSitePatterns PS00856 Guanylate kinase-like signature. 37 54 - T 16-09-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 BER92_RS02315 51a387ecf30144cc7adfed69bf67f8e7 129 SMART SM00528 73 117 4.4E-8 T 16-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BER92_RS02315 51a387ecf30144cc7adfed69bf67f8e7 129 SUPERFAMILY SSF81273 79 107 4.32E-6 T 16-09-2016 BER92_RS02315 51a387ecf30144cc7adfed69bf67f8e7 129 Gene3D G3DSA:4.10.430.10 90 106 4.0E-5 T 16-09-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BER92_RS02315 51a387ecf30144cc7adfed69bf67f8e7 129 Pfam PF00816 H-NS histone family 15 107 4.1E-18 T 16-09-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BER92_RS17210 1ba9b787cf4ef13ba0f0e9a9a3d590ff 210 Pfam PF13628 Domain of unknown function (DUF4142) 68 202 4.3E-20 T 16-09-2016 IPR025419 Domain of unknown function DUF4142 BER92_RS17210 1ba9b787cf4ef13ba0f0e9a9a3d590ff 210 PANTHER PTHR38593 69 210 2.7E-36 T 16-09-2016 BER92_RS17210 1ba9b787cf4ef13ba0f0e9a9a3d590ff 210 PANTHER PTHR38593:SF1 69 210 2.7E-36 T 16-09-2016 BER92_RS04755 87c69465b08fc369ab2099c461719386 302 SUPERFAMILY SSF52768 1 301 1.01E-95 T 16-09-2016 BER92_RS04755 87c69465b08fc369ab2099c461719386 302 Pfam PF00850 Histone deacetylase domain 18 301 3.1E-77 T 16-09-2016 IPR023801 Histone deacetylase domain BER92_RS04755 87c69465b08fc369ab2099c461719386 302 PANTHER PTHR10625:SF104 15 301 4.2E-95 T 16-09-2016 BER92_RS04755 87c69465b08fc369ab2099c461719386 302 PANTHER PTHR10625 15 301 4.2E-95 T 16-09-2016 IPR000286 Histone deacetylase superfamily BER92_RS04755 87c69465b08fc369ab2099c461719386 302 Gene3D G3DSA:3.40.800.20 2 301 1.1E-96 T 16-09-2016 IPR023801 Histone deacetylase domain BER92_RS04755 87c69465b08fc369ab2099c461719386 302 PRINTS PR01270 Histone deacetylase superfamily signature 231 241 4.2E-16 T 16-09-2016 IPR000286 Histone deacetylase superfamily BER92_RS04755 87c69465b08fc369ab2099c461719386 302 PRINTS PR01270 Histone deacetylase superfamily signature 151 166 4.2E-16 T 16-09-2016 IPR000286 Histone deacetylase superfamily BER92_RS04755 87c69465b08fc369ab2099c461719386 302 PRINTS PR01270 Histone deacetylase superfamily signature 117 140 4.2E-16 T 16-09-2016 IPR000286 Histone deacetylase superfamily BER92_RS12640 03e2ff70f459250395bc784413ed8136 94 PANTHER PTHR24960 1 90 4.3E-34 T 16-09-2016 BER92_RS12640 03e2ff70f459250395bc784413ed8136 94 PANTHER PTHR24960:SF38 1 90 4.3E-34 T 16-09-2016 BER92_RS12640 03e2ff70f459250395bc784413ed8136 94 Pfam PF00037 4Fe-4S binding domain 5 25 5.2E-6 T 16-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER92_RS12640 03e2ff70f459250395bc784413ed8136 94 SUPERFAMILY SSF54862 6 72 2.25E-18 T 16-09-2016 BER92_RS12640 03e2ff70f459250395bc784413ed8136 94 Gene3D G3DSA:3.30.70.20 6 73 2.6E-16 T 16-09-2016 BER92_RS12640 03e2ff70f459250395bc784413ed8136 94 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 16-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER92_RS02070 e5068a3be96018157d94ae2b456e7b80 156 SUPERFAMILY SSF54637 15 152 2.51E-28 T 16-09-2016 IPR029069 HotDog domain BER92_RS02070 e5068a3be96018157d94ae2b456e7b80 156 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 12 153 5.0E-35 T 16-09-2016 IPR012660 Thioesterase, putative BER92_RS02070 e5068a3be96018157d94ae2b456e7b80 156 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 17 153 1.2E-46 T 16-09-2016 IPR012660 Thioesterase, putative BER92_RS02070 e5068a3be96018157d94ae2b456e7b80 156 Gene3D G3DSA:3.10.129.10 8 155 1.3E-43 T 16-09-2016 IPR029069 HotDog domain BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 Gene3D G3DSA:2.40.128.20 10 173 2.0E-47 T 16-09-2016 IPR012674 Calycin BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 ProSitePatterns PS00213 Lipocalin signature. 31 42 - T 16-09-2016 IPR022272 Lipocalin family conserved site BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 PANTHER PTHR10612 24 174 2.0E-34 T 16-09-2016 BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 Pfam PF08212 Lipocalin-like domain 30 175 2.2E-52 T 16-09-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 PRINTS PR01171 Bacterial lipocalin signature 138 149 1.8E-7 T 16-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 PRINTS PR01171 Bacterial lipocalin signature 30 44 1.8E-7 T 16-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 PRINTS PR01171 Bacterial lipocalin signature 165 175 1.8E-7 T 16-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 PRINTS PR01171 Bacterial lipocalin signature 123 131 1.8E-7 T 16-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 SUPERFAMILY SSF50814 21 173 2.93E-39 T 16-09-2016 IPR011038 Calycin-like BER92_RS06130 7077c022a8713dc9d494f299f8e2b2dd 178 PIRSF PIRSF036893 1 177 7.8E-61 T 16-09-2016 IPR022271 Lipocalin, ApoD type BER92_RS01125 b3da28fe27341bb7fe0b6e0993a1ae38 285 SUPERFAMILY SSF56529 60 279 6.54E-84 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS01125 b3da28fe27341bb7fe0b6e0993a1ae38 285 PANTHER PTHR11820:SF71 1 283 3.2E-181 T 16-09-2016 BER92_RS01125 b3da28fe27341bb7fe0b6e0993a1ae38 285 Gene3D G3DSA:3.90.850.10 66 280 5.5E-90 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS01125 b3da28fe27341bb7fe0b6e0993a1ae38 285 PANTHER PTHR11820 1 283 3.2E-181 T 16-09-2016 BER92_RS01125 b3da28fe27341bb7fe0b6e0993a1ae38 285 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 278 7.4E-72 T 16-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 BER92_RS11565 2a9cb763beb039e5b160c6eb9761cd05 128 Gene3D G3DSA:1.20.1300.10 11 122 2.8E-26 T 16-09-2016 BER92_RS11565 2a9cb763beb039e5b160c6eb9761cd05 128 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 17 120 2.9E-28 T 16-09-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 BER92_RS11565 2a9cb763beb039e5b160c6eb9761cd05 128 SUPERFAMILY SSF81343 12 123 1.37E-24 T 16-09-2016 BER92_RS11565 2a9cb763beb039e5b160c6eb9761cd05 128 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 3 118 6.2E-15 T 16-09-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 BER92_RS01390 b58e95c96af1a9068205c11e54b9b74f 365 SMART SM01060 25 365 1.3E-6 T 16-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS01390 b58e95c96af1a9068205c11e54b9b74f 365 PANTHER PTHR11465:SF16 1 350 2.2E-154 T 16-09-2016 BER92_RS01390 b58e95c96af1a9068205c11e54b9b74f 365 Gene3D G3DSA:2.40.180.10 47 351 3.6E-73 T 16-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS01390 b58e95c96af1a9068205c11e54b9b74f 365 PIRSF PIRSF000296 18 350 1.1E-111 T 16-09-2016 IPR024168 Catalase, SrpA-type, predicted BER92_RS01390 b58e95c96af1a9068205c11e54b9b74f 365 SUPERFAMILY SSF56634 34 346 1.09E-87 T 16-09-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS01390 b58e95c96af1a9068205c11e54b9b74f 365 PANTHER PTHR11465 1 350 2.2E-154 T 16-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS01390 b58e95c96af1a9068205c11e54b9b74f 365 Pfam PF00199 Catalase 66 342 2.1E-24 T 16-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BER92_RS00380 c2dfa4d6d3ee89b9e366bbfe443893fb 285 PANTHER PTHR31284:SF10 274 285 9.0E-81 T 16-09-2016 BER92_RS00380 c2dfa4d6d3ee89b9e366bbfe443893fb 285 PANTHER PTHR31284:SF10 64 256 9.0E-81 T 16-09-2016 BER92_RS00380 c2dfa4d6d3ee89b9e366bbfe443893fb 285 PANTHER PTHR31284 274 285 9.0E-81 T 16-09-2016 BER92_RS00380 c2dfa4d6d3ee89b9e366bbfe443893fb 285 PANTHER PTHR31284 64 256 9.0E-81 T 16-09-2016 BER92_RS00380 c2dfa4d6d3ee89b9e366bbfe443893fb 285 PIRSF PIRSF019271 16 285 3.3E-84 T 16-09-2016 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 BER92_RS00380 c2dfa4d6d3ee89b9e366bbfe443893fb 285 SUPERFAMILY SSF56784 98 285 4.59E-27 T 16-09-2016 IPR023214 HAD-like domain BER92_RS00380 c2dfa4d6d3ee89b9e366bbfe443893fb 285 Gene3D G3DSA:3.40.50.1000 71 285 1.8E-39 T 16-09-2016 IPR023214 HAD-like domain BER92_RS00380 c2dfa4d6d3ee89b9e366bbfe443893fb 285 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 51 285 6.1E-40 T 16-09-2016 IPR005519 Acid phosphatase, class B-like BER92_RS15710 d260ef26af912240461253ab14938ffe 296 SUPERFAMILY SSF103088 215 279 1.44E-7 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS15710 d260ef26af912240461253ab14938ffe 296 Gene3D G3DSA:3.30.1330.60 215 279 5.0E-6 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 6.4E-39 T 16-09-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 PIRSF PIRSF500134 1 446 5.5E-189 T 16-09-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 PANTHER PTHR11374 1 448 7.1E-266 T 16-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 Gene3D G3DSA:1.20.5.100 207 234 4.5E-19 T 16-09-2016 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 424 2.3E-140 T 16-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 PANTHER PTHR11374:SF18 1 448 7.1E-266 T 16-09-2016 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 428 1.1E-31 T 16-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 SMART SM00984 324 428 9.6E-52 T 16-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 SUPERFAMILY SSF52413 315 439 3.53E-38 T 16-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 Gene3D G3DSA:3.40.50.720 1 206 2.8E-79 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 SUPERFAMILY SSF48179 204 298 9.52E-34 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 PIRSF PIRSF000124 1 443 2.2E-153 T 16-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 Gene3D G3DSA:3.40.50.720 235 447 3.6E-73 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 SUPERFAMILY SSF51735 1 194 2.47E-59 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS08140 c3742f44999b3aeb0d2718c3bd18ad9e 449 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 186 2.0E-71 T 16-09-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 BER92_RS02765 13ce72c8db5ec4214dbfbc2b72039ee7 372 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 325 349 - T 16-09-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 BER92_RS02765 13ce72c8db5ec4214dbfbc2b72039ee7 372 PANTHER PTHR30474 1 367 4.4E-151 T 16-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 BER92_RS02765 13ce72c8db5ec4214dbfbc2b72039ee7 372 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 20 367 1.2E-118 T 16-09-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 BER92_RS02765 13ce72c8db5ec4214dbfbc2b72039ee7 372 PANTHER PTHR30474:SF1 1 367 4.4E-151 T 16-09-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 BER92_RS02765 13ce72c8db5ec4214dbfbc2b72039ee7 372 Pfam PF01098 Cell cycle protein 22 367 3.0E-96 T 16-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 BER92_RS10475 c2925cca6d9194936539e52144872758 208 Pfam PF04344 Chemotaxis phosphatase, CheZ 48 113 1.7E-10 T 16-09-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- BER92_RS10475 c2925cca6d9194936539e52144872758 208 Pfam PF04344 Chemotaxis phosphatase, CheZ 126 207 1.2E-13 T 16-09-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- BER92_RS10475 c2925cca6d9194936539e52144872758 208 SUPERFAMILY SSF75708 38 207 2.48E-37 T 16-09-2016 BER92_RS10475 c2925cca6d9194936539e52144872758 208 Gene3D G3DSA:1.10.287.500 68 118 2.0E-11 T 16-09-2016 BER92_RS10475 c2925cca6d9194936539e52144872758 208 Gene3D G3DSA:1.10.287.500 126 161 1.3E-8 T 16-09-2016 BER92_RS15650 b209aaabf9f5e03f09a27b109cb7640b 312 Gene3D G3DSA:3.40.50.720 8 213 2.2E-47 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15650 b209aaabf9f5e03f09a27b109cb7640b 312 Gene3D G3DSA:3.90.25.10 214 304 3.3E-11 T 16-09-2016 BER92_RS15650 b209aaabf9f5e03f09a27b109cb7640b 312 SUPERFAMILY SSF51735 5 310 2.53E-64 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15650 b209aaabf9f5e03f09a27b109cb7640b 312 PANTHER PTHR10366:SF325 10 311 5.6E-107 T 16-09-2016 BER92_RS15650 b209aaabf9f5e03f09a27b109cb7640b 312 PANTHER PTHR10366 10 311 5.6E-107 T 16-09-2016 BER92_RS15650 b209aaabf9f5e03f09a27b109cb7640b 312 Pfam PF01370 NAD dependent epimerase/dehydratase family 11 242 6.0E-41 T 16-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 PANTHER PTHR10617:SF113 18 401 1.4E-145 T 16-09-2016 BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 Pfam PF04820 Tryptophan halogenase 110 373 1.5E-17 T 16-09-2016 IPR006905 Tryptophan halogenase BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 Pfam PF04820 Tryptophan halogenase 22 104 6.6E-11 T 16-09-2016 IPR006905 Tryptophan halogenase BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 PANTHER PTHR10617 18 401 1.4E-145 T 16-09-2016 BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 314 2.6E-7 T 16-09-2016 BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 169 184 2.6E-7 T 16-09-2016 BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 22 44 2.6E-7 T 16-09-2016 BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 SUPERFAMILY SSF51905 286 375 5.24E-40 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 SUPERFAMILY SSF51905 22 190 5.24E-40 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 Gene3D G3DSA:3.50.50.60 291 332 1.2E-40 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS01680 0ab44d984a9ff44d7a46f45fb8c942ae 452 Gene3D G3DSA:3.50.50.60 22 195 1.2E-40 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS15240 df4e4814ea2c77a118c1d55f514decc1 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS15240 df4e4814ea2c77a118c1d55f514decc1 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS15240 df4e4814ea2c77a118c1d55f514decc1 455 Pfam PF01609 Transposase DDE domain 284 421 1.4E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS15240 df4e4814ea2c77a118c1d55f514decc1 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS11155 4ad466d73eebb28875df721e13664b25 164 Pfam PF02464 Competence-damaged protein 10 162 4.0E-57 T 16-09-2016 IPR008136 CinA, C-terminal BER92_RS11155 4ad466d73eebb28875df721e13664b25 164 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 16 160 3.4E-48 T 16-09-2016 IPR008136 CinA, C-terminal BER92_RS11155 4ad466d73eebb28875df721e13664b25 164 PANTHER PTHR13939 6 164 8.1E-70 T 16-09-2016 BER92_RS11155 4ad466d73eebb28875df721e13664b25 164 SUPERFAMILY SSF142433 7 162 1.83E-54 T 16-09-2016 IPR008136 CinA, C-terminal BER92_RS11155 4ad466d73eebb28875df721e13664b25 164 Gene3D G3DSA:3.90.950.20 6 162 3.4E-54 T 16-09-2016 IPR008136 CinA, C-terminal BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 Pfam PF00593 TonB dependent receptor 395 622 5.8E-37 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 SUPERFAMILY SSF56935 34 621 2.56E-117 T 16-09-2016 BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 153 7.1E-29 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 Gene3D G3DSA:2.170.130.10 25 159 1.0E-41 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 1 623 1.6E-271 T 16-09-2016 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 PANTHER PTHR30069 21 278 1.8E-60 T 16-09-2016 BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 PANTHER PTHR30069:SF10 297 468 1.8E-60 T 16-09-2016 BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 PANTHER PTHR30069 297 468 1.8E-60 T 16-09-2016 BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 PANTHER PTHR30069:SF10 21 278 1.8E-60 T 16-09-2016 BER92_RS15150 ae9ea63330ee488d942bd67d441ce8a9 625 Gene3D G3DSA:2.40.170.20 160 622 1.3E-83 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS10180 01b2a0c8ce76f4e7fea5827876ea9083 378 PANTHER PTHR11933:SF10 1 359 3.0E-184 T 16-09-2016 BER92_RS10180 01b2a0c8ce76f4e7fea5827876ea9083 378 Gene3D G3DSA:2.40.30.10 281 359 7.0E-31 T 16-09-2016 BER92_RS10180 01b2a0c8ce76f4e7fea5827876ea9083 378 Gene3D G3DSA:2.30.30.280 209 276 1.4E-25 T 16-09-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 BER92_RS10180 01b2a0c8ce76f4e7fea5827876ea9083 378 SUPERFAMILY SSF52402 3 240 1.5E-49 T 16-09-2016 BER92_RS10180 01b2a0c8ce76f4e7fea5827876ea9083 378 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 5 356 3.7E-125 T 16-09-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 BER92_RS10180 01b2a0c8ce76f4e7fea5827876ea9083 378 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 4 357 36.926 T 16-09-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 BER92_RS10180 01b2a0c8ce76f4e7fea5827876ea9083 378 Gene3D G3DSA:3.40.50.620 3 207 7.1E-87 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS10180 01b2a0c8ce76f4e7fea5827876ea9083 378 PANTHER PTHR11933 1 359 3.0E-184 T 16-09-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 BER92_RS10180 01b2a0c8ce76f4e7fea5827876ea9083 378 Pfam PF03054 tRNA methyl transferase 5 356 1.2E-126 T 16-09-2016 BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 PANTHER PTHR23514:SF7 22 182 5.0E-131 T 16-09-2016 BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 Gene3D G3DSA:1.20.1250.20 247 420 2.8E-8 T 16-09-2016 BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 SUPERFAMILY SSF103473 22 424 7.72E-38 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 PANTHER PTHR23514 200 423 5.0E-131 T 16-09-2016 BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 Gene3D G3DSA:1.20.1250.20 25 225 7.2E-17 T 16-09-2016 BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 TIGRFAM TIGR01272 gluP: glucose/galactose transporter WARNING 104 420 1.9E-93 T 16-09-2016 IPR005964 Bacterial glucose/galactose transporter GO:0005354|GO:0005355|GO:0009276|GO:0015757|GO:0015758|GO:0016021 BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 Pfam PF07690 Major Facilitator Superfamily 30 370 1.7E-20 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 25 421 2.1E-90 T 16-09-2016 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 PANTHER PTHR23514:SF7 200 423 5.0E-131 T 16-09-2016 BER92_RS08165 9983c1140b9e37670cfddcb60bb13846 436 PANTHER PTHR23514 22 182 5.0E-131 T 16-09-2016 BER92_RS06810 6eca73df7ea36b9ecd6edf5675ad0581 469 PANTHER PTHR33803 1 469 0.0 T 16-09-2016 BER92_RS06810 6eca73df7ea36b9ecd6edf5675ad0581 469 Pfam PF05598 Transposase domain (DUF772) 73 147 3.2E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS06810 6eca73df7ea36b9ecd6edf5675ad0581 469 Pfam PF01609 Transposase DDE domain 298 435 1.3E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06810 6eca73df7ea36b9ecd6edf5675ad0581 469 PANTHER PTHR33803:SF1 1 469 0.0 T 16-09-2016 BER92_RS05575 d75a7758807ab0ab9f9811379e172044 240 Gene3D G3DSA:1.20.1250.20 45 239 8.4E-11 T 16-09-2016 BER92_RS05575 d75a7758807ab0ab9f9811379e172044 240 SUPERFAMILY SSF103473 5 236 5.75E-14 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS06420 c6e61d2ed5ca4250633de06147634203 185 Gene3D G3DSA:1.10.132.20 66 185 2.1E-43 T 16-09-2016 IPR023584 Ribosome recycling factor domain BER92_RS06420 c6e61d2ed5ca4250633de06147634203 185 Pfam PF01765 Ribosome recycling factor 20 183 1.7E-61 T 16-09-2016 IPR023584 Ribosome recycling factor domain BER92_RS06420 c6e61d2ed5ca4250633de06147634203 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.176 T 16-09-2016 IPR002661 Ribosome recycling factor GO:0006412 BER92_RS06420 c6e61d2ed5ca4250633de06147634203 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 4.0E-71 T 16-09-2016 IPR002661 Ribosome recycling factor GO:0006412 BER92_RS06420 c6e61d2ed5ca4250633de06147634203 185 PANTHER PTHR20982 1 185 2.6E-79 T 16-09-2016 IPR002661 Ribosome recycling factor GO:0006412 BER92_RS06420 c6e61d2ed5ca4250633de06147634203 185 SUPERFAMILY SSF55194 1 185 1.7E-68 T 16-09-2016 IPR023584 Ribosome recycling factor domain BER92_RS08055 59f27357e83a8ae2f1c9ef767626f84d 493 PANTHER PTHR13096:SF5 31 456 6.3E-62 T 16-09-2016 BER92_RS08055 59f27357e83a8ae2f1c9ef767626f84d 493 SUPERFAMILY SSF51197 30 323 1.13E-67 T 16-09-2016 BER92_RS08055 59f27357e83a8ae2f1c9ef767626f84d 493 Pfam PF08007 Cupin superfamily protein 33 345 4.6E-102 T 16-09-2016 IPR003347 JmjC domain BER92_RS08055 59f27357e83a8ae2f1c9ef767626f84d 493 SMART SM00558 120 249 1.5E-4 T 16-09-2016 IPR003347 JmjC domain BER92_RS08055 59f27357e83a8ae2f1c9ef767626f84d 493 Gene3D G3DSA:2.60.120.650 30 239 1.1E-37 T 16-09-2016 BER92_RS08055 59f27357e83a8ae2f1c9ef767626f84d 493 PANTHER PTHR13096 31 456 6.3E-62 T 16-09-2016 BER92_RS16950 2e4070558474f51d7580012ac07aca5c 240 Pfam PF01551 Peptidase family M23 122 214 7.5E-22 T 16-09-2016 IPR016047 Peptidase M23 BER92_RS16950 2e4070558474f51d7580012ac07aca5c 240 PANTHER PTHR21666 44 233 1.3E-33 T 16-09-2016 BER92_RS16950 2e4070558474f51d7580012ac07aca5c 240 PANTHER PTHR21666:SF204 44 233 1.3E-33 T 16-09-2016 BER92_RS16950 2e4070558474f51d7580012ac07aca5c 240 SUPERFAMILY SSF51261 81 233 7.85E-31 T 16-09-2016 IPR011055 Duplicated hybrid motif BER92_RS16950 2e4070558474f51d7580012ac07aca5c 240 Gene3D G3DSA:2.70.70.10 81 233 1.8E-31 T 16-09-2016 BER92_RS04705 beabf121b82800c0615d8eb9c79aad64 296 PANTHER PTHR30589:SF0 1 278 1.6E-102 T 16-09-2016 BER92_RS04705 beabf121b82800c0615d8eb9c79aad64 296 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 274 9.1E-75 T 16-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 BER92_RS04705 beabf121b82800c0615d8eb9c79aad64 296 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 280 19.302 T 16-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 BER92_RS04705 beabf121b82800c0615d8eb9c79aad64 296 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 139 151 - T 16-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 BER92_RS04705 beabf121b82800c0615d8eb9c79aad64 296 PANTHER PTHR30589 1 278 1.6E-102 T 16-09-2016 BER92_RS04705 beabf121b82800c0615d8eb9c79aad64 296 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 6 277 7.5E-73 T 16-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 BER92_RS07260 cf30e8ee61f351f1fcf31883d43f323e 175 PANTHER PTHR10371 19 175 6.4E-67 T 16-09-2016 BER92_RS07260 cf30e8ee61f351f1fcf31883d43f323e 175 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 26 174 3.9E-59 T 16-09-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 BER92_RS07260 cf30e8ee61f351f1fcf31883d43f323e 175 SUPERFAMILY SSF52833 20 174 2.46E-46 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS07260 cf30e8ee61f351f1fcf31883d43f323e 175 Gene3D G3DSA:3.40.30.10 94 172 2.0E-7 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS07260 cf30e8ee61f351f1fcf31883d43f323e 175 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 28 174 2.5E-46 T 16-09-2016 BER92_RS07260 cf30e8ee61f351f1fcf31883d43f323e 175 PIRSF PIRSF000216 3 175 1.1E-52 T 16-09-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 BER92_RS04055 9e959ba1f2a11d8a3e6c1426def34900 224 Pfam PF06508 Queuosine biosynthesis protein QueC 3 212 7.6E-76 T 16-09-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 BER92_RS04055 9e959ba1f2a11d8a3e6c1426def34900 224 Gene3D G3DSA:3.40.50.620 1 223 8.6E-77 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS04055 9e959ba1f2a11d8a3e6c1426def34900 224 PANTHER PTHR11587:SF3 1 222 7.5E-109 T 16-09-2016 BER92_RS04055 9e959ba1f2a11d8a3e6c1426def34900 224 SUPERFAMILY SSF52402 1 221 3.75E-63 T 16-09-2016 BER92_RS04055 9e959ba1f2a11d8a3e6c1426def34900 224 PANTHER PTHR11587 1 222 7.5E-109 T 16-09-2016 BER92_RS04055 9e959ba1f2a11d8a3e6c1426def34900 224 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 205 1.9E-57 T 16-09-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 BER92_RS04055 9e959ba1f2a11d8a3e6c1426def34900 224 PIRSF PIRSF006293 1 224 1.0E-76 T 16-09-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 BER92_RS04055 9e959ba1f2a11d8a3e6c1426def34900 224 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 218 55.589 T 16-09-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 BER92_RS08930 1e3f32355ed419c45bd1b85dae63f857 89 Pfam PF01722 BolA-like protein 11 87 2.9E-28 T 16-09-2016 IPR002634 BolA protein BER92_RS08930 1e3f32355ed419c45bd1b85dae63f857 89 Gene3D G3DSA:3.30.70.1500 2 82 2.7E-26 T 16-09-2016 BER92_RS08930 1e3f32355ed419c45bd1b85dae63f857 89 SUPERFAMILY SSF82657 2 87 2.62E-24 T 16-09-2016 IPR002634 BolA protein BER92_RS08930 1e3f32355ed419c45bd1b85dae63f857 89 PANTHER PTHR12735:SF24 1 87 8.4E-37 T 16-09-2016 BER92_RS08930 1e3f32355ed419c45bd1b85dae63f857 89 PIRSF PIRSF003113 1 89 2.3E-25 T 16-09-2016 IPR002634 BolA protein BER92_RS08930 1e3f32355ed419c45bd1b85dae63f857 89 PANTHER PTHR12735 1 87 8.4E-37 T 16-09-2016 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 SMART SM00642 95 534 7.8E-26 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 SUPERFAMILY SSF51011 567 636 5.13E-6 T 16-09-2016 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 Pfam PF00128 Alpha amylase, catalytic domain 103 313 2.8E-32 T 16-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 PANTHER PTHR10357 37 394 2.5E-258 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 PANTHER PTHR10357 434 597 2.5E-258 T 16-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 Gene3D G3DSA:3.90.400.10 182 252 1.8E-20 T 16-09-2016 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 SUPERFAMILY SSF51445 22 558 4.22E-95 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 PANTHER PTHR10357:SF122 37 394 2.5E-258 T 16-09-2016 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 PANTHER PTHR10357:SF122 434 597 2.5E-258 T 16-09-2016 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 Gene3D G3DSA:3.20.20.80 90 181 6.8E-82 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 Gene3D G3DSA:3.20.20.80 260 552 6.8E-82 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS03140 5d593ae315658f5573a8eb1481d94af3 639 Gene3D G3DSA:2.60.40.1180 567 636 1.7E-7 T 16-09-2016 IPR013780 Glycosyl hydrolase, all-beta BER92_RS10090 658cc9d133fd8f7023485685b552c2d1 401 PANTHER PTHR30544:SF5 5 392 2.8E-183 T 16-09-2016 BER92_RS10090 658cc9d133fd8f7023485685b552c2d1 401 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 22 379 73.655 T 16-09-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS10090 658cc9d133fd8f7023485685b552c2d1 401 SUPERFAMILY SSF102114 121 349 1.31E-15 T 16-09-2016 BER92_RS10090 658cc9d133fd8f7023485685b552c2d1 401 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 21 383 3.6E-133 T 16-09-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS10090 658cc9d133fd8f7023485685b552c2d1 401 Gene3D G3DSA:3.20.20.70 125 353 7.4E-15 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS10090 658cc9d133fd8f7023485685b552c2d1 401 Pfam PF04055 Radical SAM superfamily 129 300 9.7E-18 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS10090 658cc9d133fd8f7023485685b552c2d1 401 PIRSF PIRSF006004 17 392 1.2E-146 T 16-09-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS10090 658cc9d133fd8f7023485685b552c2d1 401 PANTHER PTHR30544 5 392 2.8E-183 T 16-09-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 BER92_RS17645 369e549a8ed7ecf085005b9c58930a37 301 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 23 297 7.8E-109 T 16-09-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 BER92_RS17645 369e549a8ed7ecf085005b9c58930a37 301 PANTHER PTHR11048:SF7 17 301 1.4E-85 T 16-09-2016 BER92_RS17645 369e549a8ed7ecf085005b9c58930a37 301 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 16 299 29.111 T 16-09-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 BER92_RS17645 369e549a8ed7ecf085005b9c58930a37 301 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 78 100 - T 16-09-2016 IPR030470 UbiA prenyltransferase conserved site BER92_RS17645 369e549a8ed7ecf085005b9c58930a37 301 Pfam PF01040 UbiA prenyltransferase family 39 283 4.9E-62 T 16-09-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 BER92_RS17645 369e549a8ed7ecf085005b9c58930a37 301 PANTHER PTHR11048 17 301 1.4E-85 T 16-09-2016 BER92_RS06085 bb771d87e9e747b23b1710bfd4e5c1c8 399 SUPERFAMILY SSF53756 83 370 5.14E-10 T 16-09-2016 BER92_RS17790 40a56d82f8424e58d77bc3854708d0d2 209 PANTHER PTHR10434:SF9 23 191 6.2E-74 T 16-09-2016 BER92_RS17790 40a56d82f8424e58d77bc3854708d0d2 209 PANTHER PTHR10434 23 191 6.2E-74 T 16-09-2016 BER92_RS17790 40a56d82f8424e58d77bc3854708d0d2 209 Pfam PF01553 Acyltransferase 59 168 1.3E-11 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS17790 40a56d82f8424e58d77bc3854708d0d2 209 SUPERFAMILY SSF69593 25 184 2.62E-22 T 16-09-2016 BER92_RS17790 40a56d82f8424e58d77bc3854708d0d2 209 SMART SM00563 59 171 6.7E-26 T 16-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 BER92_RS17300 086fc99ca51337117a917e552f2e6030 492 SUPERFAMILY SSF52091 396 482 9.61E-13 T 16-09-2016 IPR002645 STAS domain BER92_RS17300 086fc99ca51337117a917e552f2e6030 492 Gene3D G3DSA:3.30.750.24 395 482 7.3E-10 T 16-09-2016 IPR002645 STAS domain BER92_RS17300 086fc99ca51337117a917e552f2e6030 492 PANTHER PTHR11814:SF76 8 485 6.1E-260 T 16-09-2016 BER92_RS17300 086fc99ca51337117a917e552f2e6030 492 PANTHER PTHR11814 8 485 6.1E-260 T 16-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 BER92_RS17300 086fc99ca51337117a917e552f2e6030 492 Pfam PF00916 Sulfate permease family 16 354 4.7E-56 T 16-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BER92_RS17300 086fc99ca51337117a917e552f2e6030 492 Pfam PF01740 STAS domain 396 481 6.1E-9 T 16-09-2016 IPR002645 STAS domain BER92_RS18130 de1cbf3ee2cd99a36950b4d7d90403f8 143 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 12 95 9.0E-23 T 16-09-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 BER92_RS18130 de1cbf3ee2cd99a36950b4d7d90403f8 143 PANTHER PTHR34703:SF1 2 138 7.7E-45 T 16-09-2016 BER92_RS18130 de1cbf3ee2cd99a36950b4d7d90403f8 143 Pfam PF03334 Na+/H+ antiporter subunit 12 92 1.1E-23 T 16-09-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 BER92_RS18130 de1cbf3ee2cd99a36950b4d7d90403f8 143 PANTHER PTHR34703 2 138 7.7E-45 T 16-09-2016 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 Gene3D G3DSA:3.40.50.1820 5 307 1.8E-72 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 SUPERFAMILY SSF53474 2 310 1.29E-63 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 63 74 1.2E-13 T 16-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 37 45 1.2E-13 T 16-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 106 120 1.2E-13 T 16-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 Pfam PF00561 alpha/beta hydrolase fold 35 298 3.9E-32 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PANTHER PTHR10992:SF860 210 300 2.1E-147 T 16-09-2016 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PANTHER PTHR10992:SF860 1 174 2.1E-147 T 16-09-2016 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 7.0E-6 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 7.0E-6 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 7.0E-6 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 9 311 4.0E-150 T 16-09-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PIRSF PIRSF006431 1 313 3.8E-137 T 16-09-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PANTHER PTHR10992 210 300 2.1E-147 T 16-09-2016 BER92_RS04895 4b1ebb80b9c11949d713f0e0745ce3fe 313 PANTHER PTHR10992 1 174 2.1E-147 T 16-09-2016 BER92_RS12810 f415ee691f764ef4bd5769117e9db2ab 342 Pfam PF06144 DNA polymerase III, delta subunit 20 189 2.3E-21 T 16-09-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 BER92_RS12810 f415ee691f764ef4bd5769117e9db2ab 342 Gene3D G3DSA:1.20.272.20 222 335 2.5E-24 T 16-09-2016 BER92_RS12810 f415ee691f764ef4bd5769117e9db2ab 342 Gene3D G3DSA:1.10.8.60 143 221 4.1E-29 T 16-09-2016 BER92_RS12810 f415ee691f764ef4bd5769117e9db2ab 342 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 332 1.3E-94 T 16-09-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 BER92_RS12810 f415ee691f764ef4bd5769117e9db2ab 342 SUPERFAMILY SSF52540 2 209 2.87E-41 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12810 f415ee691f764ef4bd5769117e9db2ab 342 PANTHER PTHR34388 1 342 1.6E-73 T 16-09-2016 BER92_RS12810 f415ee691f764ef4bd5769117e9db2ab 342 Gene3D G3DSA:3.40.50.300 1 134 1.6E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12810 f415ee691f764ef4bd5769117e9db2ab 342 SUPERFAMILY SSF48019 211 333 1.11E-20 T 16-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 BER92_RS00160 b257789245fcb8d82934114e35bec6b1 110 PANTHER PTHR10948 6 109 1.0E-26 T 16-09-2016 BER92_RS00160 b257789245fcb8d82934114e35bec6b1 110 Gene3D G3DSA:3.30.420.10 8 99 2.5E-4 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS00160 b257789245fcb8d82934114e35bec6b1 110 SUPERFAMILY SSF53098 7 99 2.28E-11 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS04920 79be497d6981c0dfb46465445a6a7eb8 191 SUPERFAMILY SSF55469 7 187 1.09E-30 T 16-09-2016 IPR000415 Nitroreductase-like GO:0016491 BER92_RS04920 79be497d6981c0dfb46465445a6a7eb8 191 Pfam PF00881 Nitroreductase family 12 168 9.2E-21 T 16-09-2016 IPR029479 Nitroreductase BER92_RS04920 79be497d6981c0dfb46465445a6a7eb8 191 PANTHER PTHR23026 7 190 2.5E-78 T 16-09-2016 BER92_RS04920 79be497d6981c0dfb46465445a6a7eb8 191 PANTHER PTHR23026:SF107 7 190 2.5E-78 T 16-09-2016 BER92_RS04920 79be497d6981c0dfb46465445a6a7eb8 191 PIRSF PIRSF000232 1 191 3.3E-61 T 16-09-2016 IPR026021 Putative NAD(P)H nitroreductase YdjA-like KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- BER92_RS04920 79be497d6981c0dfb46465445a6a7eb8 191 Gene3D G3DSA:3.40.109.10 7 186 1.4E-33 T 16-09-2016 IPR000415 Nitroreductase-like GO:0016491 BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 Pfam PF00005 ABC transporter 379 531 5.5E-33 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 Gene3D G3DSA:3.40.50.300 361 596 1.3E-74 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 PANTHER PTHR24221:SF203 2 610 0.0 T 16-09-2016 BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 SMART SM00382 386 577 4.4E-20 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 Gene3D G3DSA:1.20.1560.10 29 342 8.4E-41 T 16-09-2016 BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 SUPERFAMILY SSF52540 350 601 1.24E-82 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 PANTHER PTHR24221 2 610 0.0 T 16-09-2016 BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 SUPERFAMILY SSF90123 21 342 4.32E-50 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS13025 540c8111ff5573eeca3096b2b459f69d 610 Pfam PF00664 ABC transporter transmembrane region 42 303 1.1E-14 T 16-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 BER92_RS02425 3f8152c4e767b8ee7577571744d5d993 454 TIGRFAM TIGR01436 glu_cys_lig_pln: glutamate--cysteine ligase 11 453 1.7E-210 T 16-09-2016 IPR011556 Glutamate--cysteine ligase, plant GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 BER92_RS02425 3f8152c4e767b8ee7577571744d5d993 454 PANTHER PTHR34378:SF1 15 454 3.6E-249 T 16-09-2016 BER92_RS02425 3f8152c4e767b8ee7577571744d5d993 454 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 54 357 4.0E-95 T 16-09-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 BER92_RS02425 3f8152c4e767b8ee7577571744d5d993 454 PIRSF PIRSF017901 3 454 2.5E-185 T 16-09-2016 BER92_RS02425 3f8152c4e767b8ee7577571744d5d993 454 PANTHER PTHR34378 15 454 3.6E-249 T 16-09-2016 BER92_RS02425 3f8152c4e767b8ee7577571744d5d993 454 SUPERFAMILY SSF55931 304 450 7.75E-69 T 16-09-2016 BER92_RS02425 3f8152c4e767b8ee7577571744d5d993 454 SUPERFAMILY SSF55931 25 265 7.75E-69 T 16-09-2016 BER92_RS13335 1f444e01a565a8916fa726bbb269a330 202 PANTHER PTHR19136:SF78 1 199 6.2E-45 T 16-09-2016 BER92_RS13335 1f444e01a565a8916fa726bbb269a330 202 SUPERFAMILY SSF53448 6 195 4.06E-21 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS13335 1f444e01a565a8916fa726bbb269a330 202 Gene3D G3DSA:3.90.550.10 5 195 1.9E-23 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS13335 1f444e01a565a8916fa726bbb269a330 202 Pfam PF12804 MobA-like NTP transferase domain 7 167 1.3E-24 T 16-09-2016 IPR025877 MobA-like NTP transferase BER92_RS13335 1f444e01a565a8916fa726bbb269a330 202 PANTHER PTHR19136 1 199 6.2E-45 T 16-09-2016 BER92_RS18795 83e7fe5b41d7508433a7ef8fa20bbe00 495 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 167 182 - T 16-09-2016 IPR019826 Carboxylesterase type B, active site BER92_RS18795 83e7fe5b41d7508433a7ef8fa20bbe00 495 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 67 77 - T 16-09-2016 IPR019819 Carboxylesterase type B, conserved site BER92_RS18795 83e7fe5b41d7508433a7ef8fa20bbe00 495 Pfam PF00135 Carboxylesterase family 3 470 1.2E-81 T 16-09-2016 IPR002018 Carboxylesterase, type B BER92_RS18795 83e7fe5b41d7508433a7ef8fa20bbe00 495 SUPERFAMILY SSF53474 3 467 1.3E-95 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18795 83e7fe5b41d7508433a7ef8fa20bbe00 495 PANTHER PTHR11559 3 486 1.5E-114 T 16-09-2016 BER92_RS18795 83e7fe5b41d7508433a7ef8fa20bbe00 495 Gene3D G3DSA:3.40.50.1820 3 486 1.4E-111 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS18795 83e7fe5b41d7508433a7ef8fa20bbe00 495 PANTHER PTHR11559:SF142 3 486 1.5E-114 T 16-09-2016 BER92_RS00180 8e6c125512fd61bd8fc681292b6233cf 458 PIRSF PIRSF006603 11 456 3.4E-50 T 16-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 BER92_RS00180 8e6c125512fd61bd8fc681292b6233cf 458 TIGRFAM TIGR00797 matE: MATE efflux family protein 27 427 7.0E-81 T 16-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 BER92_RS00180 8e6c125512fd61bd8fc681292b6233cf 458 PANTHER PTHR11206:SF153 11 451 4.0E-180 T 16-09-2016 BER92_RS00180 8e6c125512fd61bd8fc681292b6233cf 458 PANTHER PTHR11206 11 451 4.0E-180 T 16-09-2016 BER92_RS00180 8e6c125512fd61bd8fc681292b6233cf 458 Pfam PF01554 MatE 27 185 2.7E-24 T 16-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 BER92_RS00180 8e6c125512fd61bd8fc681292b6233cf 458 Pfam PF01554 MatE 253 412 1.3E-29 T 16-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 BER92_RS09300 3645531fd83c80f7f71843a964375f03 97 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 2 97 1.0E-30 T 16-09-2016 IPR012661 Conserved hypothetical protein CHP02448 BER92_RS09300 3645531fd83c80f7f71843a964375f03 97 Pfam PF09498 Protein of unknown function (DUF2388) 31 96 6.2E-24 T 16-09-2016 IPR012661 Conserved hypothetical protein CHP02448 BER92_RS16415 fa012ead4fe6c8e281958258f12b02de 303 PIRSF PIRSF034934 2 303 4.8E-77 T 16-09-2016 IPR017034 Abortive infection system protein AbiD/AbiF BER92_RS16415 fa012ead4fe6c8e281958258f12b02de 303 Pfam PF07751 Abi-like protein 34 221 3.6E-46 T 16-09-2016 IPR011664 Abortive infection system protein AbiD/AbiF-like BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 Gene3D G3DSA:3.40.1690.10 213 349 2.4E-48 T 16-09-2016 IPR029025 Type III secretion system substrate exporter, C-terminal BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 SUPERFAMILY SSF160544 239 344 4.19E-31 T 16-09-2016 IPR029025 Type III secretion system substrate exporter, C-terminal BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 PANTHER PTHR30531:SF7 1 355 6.7E-219 T 16-09-2016 BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 Pfam PF01312 FlhB HrpN YscU SpaS Family 3 341 3.7E-105 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 223 240 2.4E-35 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 297 318 2.4E-35 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 2.4E-35 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 267 282 2.4E-35 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 203 221 2.4E-35 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 3 343 5.6E-100 T 16-09-2016 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 BER92_RS12910 58af77bf52e7dabb72475db113c4567c 357 PANTHER PTHR30531 1 355 6.7E-219 T 16-09-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BER92_RS16450 39cd96029d5a5b7b3b024b9b3f0c78e9 90 PANTHER PTHR33215:SF1 1 89 3.4E-23 T 16-09-2016 BER92_RS16450 39cd96029d5a5b7b3b024b9b3f0c78e9 90 Gene3D G3DSA:1.10.10.60 7 86 1.4E-20 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16450 39cd96029d5a5b7b3b024b9b3f0c78e9 90 PANTHER PTHR33215 1 89 3.4E-23 T 16-09-2016 BER92_RS16450 39cd96029d5a5b7b3b024b9b3f0c78e9 90 SUPERFAMILY SSF46689 1 89 4.12E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS16450 39cd96029d5a5b7b3b024b9b3f0c78e9 90 Pfam PF01527 Transposase 4 70 2.4E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS13820 39cd96029d5a5b7b3b024b9b3f0c78e9 90 PANTHER PTHR33215:SF1 1 89 3.4E-23 T 16-09-2016 BER92_RS13820 39cd96029d5a5b7b3b024b9b3f0c78e9 90 Gene3D G3DSA:1.10.10.60 7 86 1.4E-20 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13820 39cd96029d5a5b7b3b024b9b3f0c78e9 90 PANTHER PTHR33215 1 89 3.4E-23 T 16-09-2016 BER92_RS13820 39cd96029d5a5b7b3b024b9b3f0c78e9 90 SUPERFAMILY SSF46689 1 89 4.12E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13820 39cd96029d5a5b7b3b024b9b3f0c78e9 90 Pfam PF01527 Transposase 4 70 2.4E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS08585 b809228fac0d08ece027cb88110e84de 362 PANTHER PTHR10996 1 314 4.1E-118 T 16-09-2016 BER92_RS08585 b809228fac0d08ece027cb88110e84de 362 Gene3D G3DSA:3.40.50.720 119 294 2.9E-59 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS08585 b809228fac0d08ece027cb88110e84de 362 SUPERFAMILY SSF51735 105 293 3.15E-56 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS08585 b809228fac0d08ece027cb88110e84de 362 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 17 318 4.2E-21 T 16-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 BER92_RS08585 b809228fac0d08ece027cb88110e84de 362 SUPERFAMILY SSF52283 7 140 1.78E-28 T 16-09-2016 BER92_RS08585 b809228fac0d08ece027cb88110e84de 362 Gene3D G3DSA:3.40.50.720 8 118 3.8E-30 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS08585 b809228fac0d08ece027cb88110e84de 362 PANTHER PTHR10996:SF118 1 314 4.1E-118 T 16-09-2016 BER92_RS08585 b809228fac0d08ece027cb88110e84de 362 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 153 181 - T 16-09-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER92_RS08585 b809228fac0d08ece027cb88110e84de 362 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 292 1.7E-57 T 16-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BER92_RS10080 d5e37f2ab75aa6f5b8396e03f1fc05db 287 PANTHER PTHR34475:SF1 3 284 3.5E-46 T 16-09-2016 BER92_RS10080 d5e37f2ab75aa6f5b8396e03f1fc05db 287 Pfam PF13464 Domain of unknown function (DUF4115) 203 275 6.4E-17 T 16-09-2016 IPR025194 Domain of unknown function DUF4115 BER92_RS10080 d5e37f2ab75aa6f5b8396e03f1fc05db 287 Gene3D G3DSA:1.10.260.40 16 86 1.7E-9 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS10080 d5e37f2ab75aa6f5b8396e03f1fc05db 287 PANTHER PTHR34475 3 284 3.5E-46 T 16-09-2016 BER92_RS10080 d5e37f2ab75aa6f5b8396e03f1fc05db 287 Pfam PF13413 Helix-turn-helix domain 20 78 4.0E-19 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS14075 1136cc26d99c01957039fdbc4effbd00 197 Hamap MF_00017 Recombination protein RecR [recR]. 1 196 94.29 T 16-09-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 BER92_RS14075 1136cc26d99c01957039fdbc4effbd00 197 PANTHER PTHR30446 1 197 1.7E-103 T 16-09-2016 BER92_RS14075 1136cc26d99c01957039fdbc4effbd00 197 TIGRFAM TIGR00615 recR: recombination protein RecR 3 193 2.3E-71 T 16-09-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 BER92_RS14075 1136cc26d99c01957039fdbc4effbd00 197 SMART SM00493 78 163 3.1E-7 T 16-09-2016 IPR006171 Toprim domain BER92_RS14075 1136cc26d99c01957039fdbc4effbd00 197 SUPERFAMILY SSF111304 3 195 1.7E-69 T 16-09-2016 IPR023627 Recombination protein RecR BER92_RS14075 1136cc26d99c01957039fdbc4effbd00 197 ProSitePatterns PS01300 RecR protein signature. 55 76 - T 16-09-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 BER92_RS14075 1136cc26d99c01957039fdbc4effbd00 197 Pfam PF13662 Toprim domain 79 169 5.5E-20 T 16-09-2016 IPR006171 Toprim domain BER92_RS14075 1136cc26d99c01957039fdbc4effbd00 197 Pfam PF02132 RecR protein 38 76 1.5E-13 T 16-09-2016 IPR023628 Recombination protein RecR, C4-type zinc finger BER92_RS14075 1136cc26d99c01957039fdbc4effbd00 197 PANTHER PTHR30446:SF0 1 197 1.7E-103 T 16-09-2016 BER92_RS05690 0798279e8d54056aaf84ba6b786a2148 319 SUPERFAMILY SSF101386 9 112 6.25E-23 T 16-09-2016 BER92_RS05690 0798279e8d54056aaf84ba6b786a2148 319 PANTHER PTHR30522 9 273 7.5E-118 T 16-09-2016 BER92_RS05690 0798279e8d54056aaf84ba6b786a2148 319 PANTHER PTHR30522:SF0 9 273 7.5E-118 T 16-09-2016 IPR011551 NTP pyrophosphohydrolase MazG BER92_RS05690 0798279e8d54056aaf84ba6b786a2148 319 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 174 236 3.6E-7 T 16-09-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BER92_RS05690 0798279e8d54056aaf84ba6b786a2148 319 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 33 106 2.8E-26 T 16-09-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BER92_RS05690 0798279e8d54056aaf84ba6b786a2148 319 SUPERFAMILY SSF101386 145 246 3.05E-24 T 16-09-2016 BER92_RS05690 0798279e8d54056aaf84ba6b786a2148 319 Gene3D G3DSA:1.10.287.1080 23 78 7.8E-8 T 16-09-2016 BER92_RS05690 0798279e8d54056aaf84ba6b786a2148 319 Gene3D G3DSA:1.10.287.1080 140 228 1.8E-13 T 16-09-2016 BER92_RS05690 0798279e8d54056aaf84ba6b786a2148 319 TIGRFAM TIGR00444 mazG: MazG family protein 16 267 8.6E-90 T 16-09-2016 IPR011551 NTP pyrophosphohydrolase MazG BER92_RS05860 9396232da70a7fadda3793b588f61b2e 82 PANTHER PTHR34386:SF2 7 80 7.5E-21 T 16-09-2016 BER92_RS05860 9396232da70a7fadda3793b588f61b2e 82 Pfam PF05768 Glutaredoxin-like domain (DUF836) 8 77 5.6E-12 T 16-09-2016 IPR008554 Glutaredoxin-like BER92_RS05860 9396232da70a7fadda3793b588f61b2e 82 SUPERFAMILY SSF52833 8 79 3.92E-13 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS05860 9396232da70a7fadda3793b588f61b2e 82 Gene3D G3DSA:3.40.30.10 7 79 2.4E-25 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS05860 9396232da70a7fadda3793b588f61b2e 82 PANTHER PTHR34386 7 80 7.5E-21 T 16-09-2016 BER92_RS12300 4782ace254e95a0e5102d345495b4c03 151 Pfam PF09537 Domain of unknown function (DUF2383) 7 114 1.1E-29 T 16-09-2016 IPR019052 Domain of unknown function DUF2383 BER92_RS12300 4782ace254e95a0e5102d345495b4c03 151 TIGRFAM TIGR02284 TIGR02284: conserved hypothetical protein 7 144 1.6E-54 T 16-09-2016 IPR011971 Conserved hypothetical protein CHP02284 BER92_RS12300 4782ace254e95a0e5102d345495b4c03 151 Gene3D G3DSA:1.20.1260.10 11 46 6.6E-4 T 16-09-2016 IPR012347 Ferritin-related BER92_RS04750 874520bb15e6ab8e783f6a0937404597 813 Gene3D G3DSA:2.60.450.10 60 209 6.1E-12 T 16-09-2016 BER92_RS04750 874520bb15e6ab8e783f6a0937404597 813 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 16 771 20.461 T 16-09-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 BER92_RS04750 874520bb15e6ab8e783f6a0937404597 813 Pfam PF04453 Organic solvent tolerance protein 300 710 8.5E-101 T 16-09-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 BER92_RS04750 874520bb15e6ab8e783f6a0937404597 813 Pfam PF03968 OstA-like protein 66 195 2.1E-7 T 16-09-2016 IPR005653 Organic solvent tolerance-like, N-terminal BER92_RS04750 874520bb15e6ab8e783f6a0937404597 813 PANTHER PTHR30189 1 418 7.9E-102 T 16-09-2016 BER92_RS04750 874520bb15e6ab8e783f6a0937404597 813 PANTHER PTHR30189 443 813 7.9E-102 T 16-09-2016 BER92_RS06115 676592bf0002c72259d0b0b64ac8f14a 218 Pfam PF14279 HNH endonuclease 124 178 3.2E-17 T 16-09-2016 IPR029471 HNH endonuclease 5 BER92_RS06115 676592bf0002c72259d0b0b64ac8f14a 218 PANTHER PTHR33877 24 213 3.3E-57 T 16-09-2016 BER92_RS06115 676592bf0002c72259d0b0b64ac8f14a 218 PANTHER PTHR33877:SF2 24 213 3.3E-57 T 16-09-2016 BER92_RS06115 676592bf0002c72259d0b0b64ac8f14a 218 SMART SM00507 111 164 1.2E-9 T 16-09-2016 IPR003615 HNH nuclease BER92_RS01755 402b0204eea4a388f194f84e03039535 86 Pfam PF05166 YcgL domain 4 75 3.2E-25 T 16-09-2016 IPR027354 YcgL domain BER92_RS01755 402b0204eea4a388f194f84e03039535 86 Hamap MF_01866 Protein YcgL [ycgL]. 1 86 20.358 T 16-09-2016 IPR027354 YcgL domain BER92_RS01755 402b0204eea4a388f194f84e03039535 86 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 5 75 1.0E-31 T 16-09-2016 IPR027354 YcgL domain BER92_RS01755 402b0204eea4a388f194f84e03039535 86 SUPERFAMILY SSF160191 1 76 4.71E-24 T 16-09-2016 BER92_RS01755 402b0204eea4a388f194f84e03039535 86 PANTHER PTHR38109 2 86 6.0E-35 T 16-09-2016 BER92_RS10010 a90cbb34edec3b122cfe8a613d45eb74 322 PANTHER PTHR35604:SF2 2 322 3.1E-239 T 16-09-2016 BER92_RS10010 a90cbb34edec3b122cfe8a613d45eb74 322 Pfam PF01609 Transposase DDE domain 135 310 6.1E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10010 a90cbb34edec3b122cfe8a613d45eb74 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.3E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS10010 a90cbb34edec3b122cfe8a613d45eb74 322 PANTHER PTHR35604 2 322 3.1E-239 T 16-09-2016 BER92_RS02160 442e74c28f9b0c9d31c222fcc2c47a1a 465 PANTHER PTHR21337 4 458 2.0E-263 T 16-09-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS02160 442e74c28f9b0c9d31c222fcc2c47a1a 465 SUPERFAMILY SSF51569 12 454 8.06E-181 T 16-09-2016 BER92_RS02160 442e74c28f9b0c9d31c222fcc2c47a1a 465 Pfam PF01474 Class-II DAHP synthetase family 17 451 1.7E-187 T 16-09-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS02160 442e74c28f9b0c9d31c222fcc2c47a1a 465 PANTHER PTHR21337:SF0 4 458 2.0E-263 T 16-09-2016 BER92_RS02160 442e74c28f9b0c9d31c222fcc2c47a1a 465 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 17 457 7.9E-224 T 16-09-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 BER92_RS18555 2f24b594e8bf237d5c9689d183530b85 152 Gene3D G3DSA:3.30.110.70 68 100 4.2E-4 T 16-09-2016 IPR002765 Uncharacterised protein family UPF0145 BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 SUPERFAMILY SSF52540 97 365 2.55E-95 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 11 438 4.6E-169 T 16-09-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 Gene3D G3DSA:3.40.50.300 97 361 1.0E-92 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 PANTHER PTHR15184:SF48 2 436 1.6E-253 T 16-09-2016 BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 359 7.8E-73 T 16-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 93 4.5E-9 T 16-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 SMART SM00382 162 344 4.0E-7 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 PANTHER PTHR15184 2 436 1.6E-253 T 16-09-2016 BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 TIGRFAM TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase 23 438 5.3E-189 T 16-09-2016 IPR013380 ATPase, type III secretion system, H+-transporting GO:0005524|GO:0005737|GO:0006754|GO:0030254|GO:0030257|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS12880 3d3b94172d8c81b8e895fbe77ad37759 442 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 350 359 - T 16-09-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 BER92_RS10835 700747133e8f20000f961206cbdb26e1 271 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 16 269 2.1E-95 T 16-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 BER92_RS10835 700747133e8f20000f961206cbdb26e1 271 Pfam PF02548 Ketopantoate hydroxymethyltransferase 11 264 4.5E-101 T 16-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 BER92_RS10835 700747133e8f20000f961206cbdb26e1 271 PANTHER PTHR20881:SF3 8 270 2.2E-166 T 16-09-2016 BER92_RS10835 700747133e8f20000f961206cbdb26e1 271 PANTHER PTHR20881 8 270 2.2E-166 T 16-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 BER92_RS10835 700747133e8f20000f961206cbdb26e1 271 SUPERFAMILY SSF51621 10 269 1.3E-96 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS10835 700747133e8f20000f961206cbdb26e1 271 PIRSF PIRSF000388 1 271 3.1E-94 T 16-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 BER92_RS10835 700747133e8f20000f961206cbdb26e1 271 Gene3D G3DSA:3.20.20.60 8 269 4.1E-104 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS10835 700747133e8f20000f961206cbdb26e1 271 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 269 40.577 T 16-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 BER92_RS11915 198c378a9d0b331683083b470b23701e 166 PANTHER PTHR33823 23 165 2.7E-55 T 16-09-2016 BER92_RS11915 198c378a9d0b331683083b470b23701e 166 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 43 165 28.58 T 16-09-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 BER92_RS11915 198c378a9d0b331683083b470b23701e 166 SUPERFAMILY SSF57716 126 164 1.15E-6 T 16-09-2016 BER92_RS11915 198c378a9d0b331683083b470b23701e 166 SUPERFAMILY SSF109635 33 125 2.88E-29 T 16-09-2016 BER92_RS11915 198c378a9d0b331683083b470b23701e 166 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 47 156 2.6E-43 T 16-09-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 BER92_RS11915 198c378a9d0b331683083b470b23701e 166 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 124 156 4.7E-8 T 16-09-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 BER92_RS11915 198c378a9d0b331683083b470b23701e 166 PANTHER PTHR33823:SF2 23 165 2.7E-55 T 16-09-2016 BER92_RS01320 9bb0400dc785c1b0b6ac5a32674d3e08 371 SUPERFAMILY SSF53474 108 342 3.19E-40 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS01320 9bb0400dc785c1b0b6ac5a32674d3e08 371 Pfam PF12697 Alpha/beta hydrolase family 112 322 3.6E-17 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS01320 9bb0400dc785c1b0b6ac5a32674d3e08 371 PANTHER PTHR10992 109 341 3.1E-24 T 16-09-2016 BER92_RS01320 9bb0400dc785c1b0b6ac5a32674d3e08 371 Gene3D G3DSA:3.40.50.1820 262 339 3.1E-43 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS01320 9bb0400dc785c1b0b6ac5a32674d3e08 371 Gene3D G3DSA:3.40.50.1820 105 226 3.1E-43 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 SUPERFAMILY SSF51735 170 269 1.01E-27 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 SUPERFAMILY SSF51735 372 504 1.01E-27 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 PANTHER PTHR24322 437 469 2.5E-72 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 PANTHER PTHR24322 217 268 2.5E-72 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 PANTHER PTHR24322 375 417 2.5E-72 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 PANTHER PTHR24322:SF506 178 197 2.5E-72 T 16-09-2016 BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 Gene3D G3DSA:3.40.50.720 156 261 9.5E-47 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 Gene3D G3DSA:3.40.50.720 367 511 9.5E-47 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 PANTHER PTHR24322 178 197 2.5E-72 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 382 479 3.7E-8 T 16-09-2016 BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 PANTHER PTHR24322:SF506 437 469 2.5E-72 T 16-09-2016 BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 PANTHER PTHR24322:SF506 375 417 2.5E-72 T 16-09-2016 BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 PANTHER PTHR24322:SF506 217 268 2.5E-72 T 16-09-2016 BER92_RS02475 cda9310774782720ad9cb5a575018c91 528 Pfam PF00106 short chain dehydrogenase 175 266 4.9E-7 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 Pfam PF01743 Poly A polymerase head domain 56 182 5.3E-34 T 16-09-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 PANTHER PTHR13734:SF47 5 316 3.5E-126 T 16-09-2016 BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 Pfam PF12626 Polymerase A arginine-rich C-terminus 327 447 6.0E-32 T 16-09-2016 IPR025866 Polymerase A arginine-rich C-terminal domain BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 17 448 37.913 T 16-09-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 Gene3D G3DSA:3.30.460.10 26 179 1.5E-46 T 16-09-2016 BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 210 272 7.2E-20 T 16-09-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 Gene3D G3DSA:1.10.3090.10 180 413 9.3E-43 T 16-09-2016 BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 SUPERFAMILY SSF81891 183 415 1.57E-44 T 16-09-2016 BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 PANTHER PTHR13734 5 316 3.5E-126 T 16-09-2016 BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 SUPERFAMILY SSF81301 27 180 8.83E-39 T 16-09-2016 BER92_RS10845 72f3a7231c812b4fd9180fe92c0ee6f8 454 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 25 451 1.1E-151 T 16-09-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 BER92_RS06315 90715d737889a07c587d7609dcdc47eb 789 PANTHER PTHR31151:SF0 30 650 8.3E-214 T 16-09-2016 BER92_RS06315 90715d737889a07c587d7609dcdc47eb 789 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 56 570 3.3E-168 T 16-09-2016 IPR012878 Beta-L-arabinofuranosidase, GH127 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 BER92_RS06315 90715d737889a07c587d7609dcdc47eb 789 PANTHER PTHR31151 30 650 8.3E-214 T 16-09-2016 BER92_RS06315 90715d737889a07c587d7609dcdc47eb 789 SUPERFAMILY SSF48208 189 409 5.1E-11 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS06315 90715d737889a07c587d7609dcdc47eb 789 SUPERFAMILY SSF48208 102 145 5.1E-11 T 16-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 BER92_RS02945 85e7d3d6b0db03d4f88cbc495785b04b 106 Gene3D G3DSA:1.10.10.60 8 94 7.6E-19 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS02945 85e7d3d6b0db03d4f88cbc495785b04b 106 PANTHER PTHR33215 1 106 2.9E-26 T 16-09-2016 BER92_RS02945 85e7d3d6b0db03d4f88cbc495785b04b 106 Pfam PF01527 Transposase 1 86 1.1E-8 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS02945 85e7d3d6b0db03d4f88cbc495785b04b 106 PANTHER PTHR33215:SF3 1 106 2.9E-26 T 16-09-2016 BER92_RS02945 85e7d3d6b0db03d4f88cbc495785b04b 106 SUPERFAMILY SSF46689 3 98 4.48E-16 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09575 51c89feca2d3e666645ca8bb47566d76 455 PANTHER PTHR33803 1 361 7.7E-250 T 16-09-2016 BER92_RS09575 51c89feca2d3e666645ca8bb47566d76 455 Pfam PF05598 Transposase domain (DUF772) 59 133 3.0E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS09575 51c89feca2d3e666645ca8bb47566d76 455 PANTHER PTHR33803:SF1 1 361 7.7E-250 T 16-09-2016 BER92_RS17060 b25871b4976bd2959e03c4c7256ab19a 185 SUPERFAMILY SSF82153 40 185 1.44E-41 T 16-09-2016 IPR000782 FAS1 domain BER92_RS17060 b25871b4976bd2959e03c4c7256ab19a 185 Pfam PF02469 Fasciclin domain 51 185 9.3E-35 T 16-09-2016 IPR000782 FAS1 domain BER92_RS17060 b25871b4976bd2959e03c4c7256ab19a 185 Gene3D G3DSA:2.30.180.10 40 185 1.1E-38 T 16-09-2016 IPR000782 FAS1 domain BER92_RS17060 b25871b4976bd2959e03c4c7256ab19a 185 PANTHER PTHR10900 36 185 2.0E-50 T 16-09-2016 BER92_RS17060 b25871b4976bd2959e03c4c7256ab19a 185 SMART SM00554 75 185 3.1E-25 T 16-09-2016 IPR000782 FAS1 domain BER92_RS15245 947ae2448cc7189618edc65809a1c135 348 SUPERFAMILY SSF55874 180 311 5.57E-7 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS01890 399759ed9a08c194689bf14264996cc5 304 PANTHER PTHR30469:SF15 18 289 7.2E-22 T 16-09-2016 BER92_RS01890 399759ed9a08c194689bf14264996cc5 304 Pfam PF13437 HlyD family secretion protein 142 231 2.5E-10 T 16-09-2016 BER92_RS01890 399759ed9a08c194689bf14264996cc5 304 Gene3D G3DSA:2.40.50.100 101 172 2.4E-9 T 16-09-2016 BER92_RS01890 399759ed9a08c194689bf14264996cc5 304 SUPERFAMILY SSF111369 79 204 1.44E-5 T 16-09-2016 BER92_RS01890 399759ed9a08c194689bf14264996cc5 304 PANTHER PTHR30469 18 289 7.2E-22 T 16-09-2016 BER92_RS02955 b48bed3ff22b6f4f6104bcec4a2c5e02 425 TIGRFAM TIGR01272 gluP: glucose/galactose transporter WARNING 93 411 4.1E-125 T 16-09-2016 IPR005964 Bacterial glucose/galactose transporter GO:0005354|GO:0005355|GO:0009276|GO:0015757|GO:0015758|GO:0016021 BER92_RS02955 b48bed3ff22b6f4f6104bcec4a2c5e02 425 Pfam PF07690 Major Facilitator Superfamily 18 376 1.8E-13 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS02955 b48bed3ff22b6f4f6104bcec4a2c5e02 425 PANTHER PTHR23514:SF10 189 418 4.5E-192 T 16-09-2016 BER92_RS02955 b48bed3ff22b6f4f6104bcec4a2c5e02 425 PANTHER PTHR23514:SF10 5 171 4.5E-192 T 16-09-2016 BER92_RS02955 b48bed3ff22b6f4f6104bcec4a2c5e02 425 Gene3D G3DSA:1.20.1250.20 13 220 6.2E-14 T 16-09-2016 BER92_RS02955 b48bed3ff22b6f4f6104bcec4a2c5e02 425 PANTHER PTHR23514 189 418 4.5E-192 T 16-09-2016 BER92_RS02955 b48bed3ff22b6f4f6104bcec4a2c5e02 425 PANTHER PTHR23514 5 171 4.5E-192 T 16-09-2016 BER92_RS02955 b48bed3ff22b6f4f6104bcec4a2c5e02 425 SUPERFAMILY SSF103473 8 414 5.62E-30 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS02955 b48bed3ff22b6f4f6104bcec4a2c5e02 425 Gene3D G3DSA:1.20.1250.20 236 411 1.4E-5 T 16-09-2016 BER92_RS13280 d4a31359bcc18cf670cb0354df9841ac 249 SUPERFAMILY SSF53254 1 246 3.88E-79 T 16-09-2016 IPR029033 Histidine phosphatase superfamily BER92_RS13280 d4a31359bcc18cf670cb0354df9841ac 249 PANTHER PTHR11931 2 249 2.8E-157 T 16-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 BER92_RS13280 d4a31359bcc18cf670cb0354df9841ac 249 Gene3D G3DSA:3.40.50.1240 1 249 9.7E-97 T 16-09-2016 IPR029033 Histidine phosphatase superfamily BER92_RS13280 d4a31359bcc18cf670cb0354df9841ac 249 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 2 229 44.63 T 16-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 BER92_RS13280 d4a31359bcc18cf670cb0354df9841ac 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 138 209 3.1E-5 T 16-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 BER92_RS13280 d4a31359bcc18cf670cb0354df9841ac 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 124 1.9E-29 T 16-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 BER92_RS13280 d4a31359bcc18cf670cb0354df9841ac 249 SMART SM00855 4 190 3.1E-26 T 16-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 BER92_RS13280 d4a31359bcc18cf670cb0354df9841ac 249 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 4 247 3.4E-121 T 16-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 BER92_RS13280 d4a31359bcc18cf670cb0354df9841ac 249 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 16-09-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 BER92_RS16030 2c0dbc9251d9a7cc89c212dd11ed4701 236 Pfam PF00849 RNA pseudouridylate synthase 61 136 6.1E-10 T 16-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS16030 2c0dbc9251d9a7cc89c212dd11ed4701 236 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 64 223 3.5E-40 T 16-09-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BER92_RS16030 2c0dbc9251d9a7cc89c212dd11ed4701 236 SUPERFAMILY SSF55120 61 225 1.18E-35 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS16030 2c0dbc9251d9a7cc89c212dd11ed4701 236 PANTHER PTHR21600 1 231 9.7E-60 T 16-09-2016 BER92_RS16030 2c0dbc9251d9a7cc89c212dd11ed4701 236 Gene3D G3DSA:3.10.290.10 1 53 2.4E-5 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS16030 2c0dbc9251d9a7cc89c212dd11ed4701 236 PANTHER PTHR21600:SF19 1 231 9.7E-60 T 16-09-2016 BER92_RS03745 4399adc5ff7f99102de98b9462528e2d 87 Pfam PF04999 Cell division protein FtsL 5 87 2.5E-24 T 16-09-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 BER92_RS03745 4399adc5ff7f99102de98b9462528e2d 87 PANTHER PTHR37479 1 87 3.3E-35 T 16-09-2016 BER92_RS03745 4399adc5ff7f99102de98b9462528e2d 87 Hamap MF_00910 Cell division protein FtsL [ftsL]. 2 85 15.647 T 16-09-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 BER92_RS03745 4399adc5ff7f99102de98b9462528e2d 87 PANTHER PTHR37479:SF1 1 87 3.3E-35 T 16-09-2016 BER92_RS03745 4399adc5ff7f99102de98b9462528e2d 87 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 4 85 8.1E-21 T 16-09-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 BER92_RS09850 833495c7cc32f069ee70c912f6eef7e5 165 Gene3D G3DSA:2.30.110.20 2 159 3.0E-50 T 16-09-2016 IPR008514 Type VI secretion system effector, Hcp BER92_RS09850 833495c7cc32f069ee70c912f6eef7e5 165 PANTHER PTHR36152 1 165 2.2E-25 T 16-09-2016 BER92_RS09850 833495c7cc32f069ee70c912f6eef7e5 165 SUPERFAMILY SSF141452 1 159 2.62E-45 T 16-09-2016 IPR008514 Type VI secretion system effector, Hcp BER92_RS09850 833495c7cc32f069ee70c912f6eef7e5 165 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 7 143 3.8E-25 T 16-09-2016 IPR008514 Type VI secretion system effector, Hcp BER92_RS09850 833495c7cc32f069ee70c912f6eef7e5 165 Pfam PF05638 Type VI secretion system effector, Hcp 5 137 3.4E-36 T 16-09-2016 IPR008514 Type VI secretion system effector, Hcp BER92_RS07720 0efe0e48abeaf47ff139cb231bd34eca 393 Pfam PF03743 Bacterial conjugation TrbI-like protein 202 387 2.4E-47 T 16-09-2016 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI BER92_RS08920 1885612f785213a8031b939bd338fa5d 301 PANTHER PTHR33969:SF2 31 296 1.6E-106 T 16-09-2016 BER92_RS08920 1885612f785213a8031b939bd338fa5d 301 PANTHER PTHR33969 31 296 1.6E-106 T 16-09-2016 BER92_RS08920 1885612f785213a8031b939bd338fa5d 301 Pfam PF02616 Segregation and condensation protein ScpA 64 274 2.4E-28 T 16-09-2016 IPR003768 Segregation and condensation protein A BER92_RS08920 1885612f785213a8031b939bd338fa5d 301 Hamap MF_01805 Segregation and condensation protein A [scpA]. 47 277 21.963 T 16-09-2016 IPR003768 Segregation and condensation protein A BER92_RS03505 f3a37a408796196eadc603f01bd9e1f5 215 SUPERFAMILY SSF75445 125 197 1.1E-22 T 16-09-2016 BER92_RS03505 f3a37a408796196eadc603f01bd9e1f5 215 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 47 210 3.7E-57 T 16-09-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 BER92_RS03505 f3a37a408796196eadc603f01bd9e1f5 215 PANTHER PTHR11934 1 210 8.2E-132 T 16-09-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 BER92_RS03505 f3a37a408796196eadc603f01bd9e1f5 215 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 1 215 33.292 T 16-09-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 BER92_RS03505 f3a37a408796196eadc603f01bd9e1f5 215 Gene3D G3DSA:3.30.70.260 135 195 4.9E-28 T 16-09-2016 BER92_RS03505 f3a37a408796196eadc603f01bd9e1f5 215 Gene3D G3DSA:3.40.50.1360 2 134 4.6E-57 T 16-09-2016 BER92_RS03505 f3a37a408796196eadc603f01bd9e1f5 215 SUPERFAMILY SSF100950 2 144 4.19E-46 T 16-09-2016 BER92_RS03505 f3a37a408796196eadc603f01bd9e1f5 215 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 5 209 1.2E-66 T 16-09-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 BER92_RS03505 f3a37a408796196eadc603f01bd9e1f5 215 PANTHER PTHR11934:SF11 1 210 8.2E-132 T 16-09-2016 BER92_RS03805 8466d005a31858ea61eb24a75ada6133 303 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 275 2.8E-105 T 16-09-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 BER92_RS03805 8466d005a31858ea61eb24a75ada6133 303 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 2 280 48.722 T 16-09-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 BER92_RS03805 8466d005a31858ea61eb24a75ada6133 303 SUPERFAMILY SSF54211 134 277 6.37E-51 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS03805 8466d005a31858ea61eb24a75ada6133 303 Gene3D G3DSA:3.30.1700.10 128 282 2.3E-59 T 16-09-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 BER92_RS03805 8466d005a31858ea61eb24a75ada6133 303 PANTHER PTHR33694 1 293 9.9E-132 T 16-09-2016 BER92_RS03805 8466d005a31858ea61eb24a75ada6133 303 PANTHER PTHR33694:SF1 1 293 9.9E-132 T 16-09-2016 BER92_RS03805 8466d005a31858ea61eb24a75ada6133 303 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3 295 8.1E-118 T 16-09-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 BER92_RS03805 8466d005a31858ea61eb24a75ada6133 303 SUPERFAMILY SSF54211 3 124 4.48E-42 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS03805 8466d005a31858ea61eb24a75ada6133 303 Gene3D G3DSA:3.30.230.20 3 125 2.8E-45 T 16-09-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 BER92_RS17855 6760d3006a7c76197223ef798f5551f5 127 Pfam PF03692 Putative zinc- or iron-chelating domain 4 97 1.1E-12 T 16-09-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein BER92_RS10575 789b806f85edeb9572105b1950adfcdf 128 Pfam PF01609 Transposase DDE domain 5 118 4.9E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10575 789b806f85edeb9572105b1950adfcdf 128 PANTHER PTHR30007:SF0 1 122 1.2E-19 T 16-09-2016 BER92_RS10575 789b806f85edeb9572105b1950adfcdf 128 PANTHER PTHR30007 1 122 1.2E-19 T 16-09-2016 BER92_RS01410 80d50158bcecccfc4e60acf6cc2ca9ae 368 Pfam PF01594 Domain of unknown function DUF20 34 355 1.3E-41 T 16-09-2016 IPR002549 Transmembrane protein TqsA-like BER92_RS01410 80d50158bcecccfc4e60acf6cc2ca9ae 368 PANTHER PTHR21716 6 368 1.7E-154 T 16-09-2016 IPR002549 Transmembrane protein TqsA-like BER92_RS01410 80d50158bcecccfc4e60acf6cc2ca9ae 368 PANTHER PTHR21716:SF16 6 368 1.7E-154 T 16-09-2016 BER92_RS13500 e419406b6c2e1dd97b53c68984fef8e8 254 PANTHER PTHR24220:SF85 3 251 3.7E-128 T 16-09-2016 BER92_RS13500 e419406b6c2e1dd97b53c68984fef8e8 254 Pfam PF00005 ABC transporter 17 172 1.7E-20 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS13500 e419406b6c2e1dd97b53c68984fef8e8 254 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 242 1.8E-108 T 16-09-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 BER92_RS13500 e419406b6c2e1dd97b53c68984fef8e8 254 Gene3D G3DSA:3.40.50.300 1 242 8.0E-46 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13500 e419406b6c2e1dd97b53c68984fef8e8 254 PANTHER PTHR24220 3 251 3.7E-128 T 16-09-2016 BER92_RS13500 e419406b6c2e1dd97b53c68984fef8e8 254 SUPERFAMILY SSF52540 2 233 5.44E-41 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13500 e419406b6c2e1dd97b53c68984fef8e8 254 SMART SM00382 26 230 8.3E-4 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS06675 5419b9a4968561bd8f14f7d62dc0a742 255 Pfam PF01026 TatD related DNase 4 251 3.5E-65 T 16-09-2016 IPR001130 TatD family GO:0016788 BER92_RS06675 5419b9a4968561bd8f14f7d62dc0a742 255 Gene3D G3DSA:3.20.20.140 1 253 1.2E-80 T 16-09-2016 BER92_RS06675 5419b9a4968561bd8f14f7d62dc0a742 255 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 188 204 - T 16-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BER92_RS06675 5419b9a4968561bd8f14f7d62dc0a742 255 PIRSF PIRSF005902 1 255 9.9E-68 T 16-09-2016 IPR001130 TatD family GO:0016788 BER92_RS06675 5419b9a4968561bd8f14f7d62dc0a742 255 SUPERFAMILY SSF51556 3 253 5.42E-80 T 16-09-2016 IPR032466 Metal-dependent hydrolase BER92_RS06675 5419b9a4968561bd8f14f7d62dc0a742 255 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 125 135 - T 16-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BER92_RS06675 5419b9a4968561bd8f14f7d62dc0a742 255 PANTHER PTHR10060 1 255 4.3E-91 T 16-09-2016 IPR001130 TatD family GO:0016788 BER92_RS06675 5419b9a4968561bd8f14f7d62dc0a742 255 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 16-09-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BER92_RS03495 0cdab6f0a59b746fe2afa85c14bc569a 293 Pfam PF13369 Transglutaminase-like superfamily 60 209 1.8E-46 T 16-09-2016 IPR032698 Protein SirB1, N-terminal BER92_RS03495 0cdab6f0a59b746fe2afa85c14bc569a 293 Pfam PF13371 Tetratricopeptide repeat 211 282 1.2E-18 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS03495 0cdab6f0a59b746fe2afa85c14bc569a 293 SUPERFAMILY SSF48452 204 276 1.28E-9 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS03495 0cdab6f0a59b746fe2afa85c14bc569a 293 PANTHER PTHR31350:SF1 11 292 3.8E-64 T 16-09-2016 BER92_RS03495 0cdab6f0a59b746fe2afa85c14bc569a 293 PANTHER PTHR31350 11 292 3.8E-64 T 16-09-2016 BER92_RS03495 0cdab6f0a59b746fe2afa85c14bc569a 293 Gene3D G3DSA:1.25.40.10 204 276 4.9E-10 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS04490 d05c77d819b1fa9bfa32f92e8e98303b 161 SUPERFAMILY SSF55729 12 139 2.74E-23 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS04490 d05c77d819b1fa9bfa32f92e8e98303b 161 PANTHER PTHR23091 4 136 3.2E-19 T 16-09-2016 BER92_RS04490 d05c77d819b1fa9bfa32f92e8e98303b 161 PANTHER PTHR23091:SF122 4 136 3.2E-19 T 16-09-2016 BER92_RS04490 d05c77d819b1fa9bfa32f92e8e98303b 161 Gene3D G3DSA:3.40.630.30 12 138 2.3E-22 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS04490 d05c77d819b1fa9bfa32f92e8e98303b 161 Pfam PF00583 Acetyltransferase (GNAT) family 65 137 1.7E-13 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS17795 bed63f7bd57c811b9240ed7c1b54bc76 143 Gene3D G3DSA:3.30.160.200 6 110 3.4E-31 T 16-09-2016 BER92_RS17795 bed63f7bd57c811b9240ed7c1b54bc76 143 PANTHER PTHR11075 11 138 4.5E-38 T 16-09-2016 BER92_RS17795 bed63f7bd57c811b9240ed7c1b54bc76 143 Pfam PF00472 RF-1 domain 11 137 4.9E-23 T 16-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BER92_RS17795 bed63f7bd57c811b9240ed7c1b54bc76 143 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 25 41 - T 16-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BER92_RS17795 bed63f7bd57c811b9240ed7c1b54bc76 143 SUPERFAMILY SSF110916 12 101 4.97E-12 T 16-09-2016 BER92_RS11790 36c33cc5cb24f16331e84d07bb59a205 206 Pfam PF03389 MobA/MobL family 60 200 3.6E-42 T 16-09-2016 IPR005053 MobA/MobL protein BER92_RS04665 4a3147806d31d785d62c44f6d47479ad 117 PIRSF PIRSF021239 6 117 4.8E-51 T 16-09-2016 IPR007437 Putative member of DMT superfamily BER92_RS04665 4a3147806d31d785d62c44f6d47479ad 117 PANTHER PTHR38482 4 117 1.9E-57 T 16-09-2016 BER92_RS04665 4a3147806d31d785d62c44f6d47479ad 117 Pfam PF04342 Putative member of DMT superfamily (DUF486) 13 115 5.1E-45 T 16-09-2016 IPR007437 Putative member of DMT superfamily BER92_RS08705 ad6085bad8507a31fdce4640b52fb517 208 Pfam PF01865 Protein of unknown function DUF47 61 203 4.6E-6 T 16-09-2016 IPR018445 Putative phosphate transport regulator BER92_RS08705 ad6085bad8507a31fdce4640b52fb517 208 PANTHER PTHR37298 2 208 2.2E-74 T 16-09-2016 BER92_RS15685 1c338d0caebd90eaa7ec6e2c9d86b2bf 261 Pfam PF01061 ABC-2 type transporter 16 221 6.6E-28 T 16-09-2016 IPR013525 ABC-2 type transporter GO:0016020 BER92_RS15685 1c338d0caebd90eaa7ec6e2c9d86b2bf 261 PANTHER PTHR30413 1 261 5.8E-92 T 16-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 BER92_RS15685 1c338d0caebd90eaa7ec6e2c9d86b2bf 261 PANTHER PTHR30413:SF8 1 261 5.8E-92 T 16-09-2016 BER92_RS15960 0997f531a3e9ed9f9c985502c3028e9a 223 PANTHER PTHR36920:SF1 2 26 3.5E-84 T 16-09-2016 BER92_RS15960 0997f531a3e9ed9f9c985502c3028e9a 223 PANTHER PTHR36920:SF1 45 223 3.5E-84 T 16-09-2016 BER92_RS15960 0997f531a3e9ed9f9c985502c3028e9a 223 Pfam PF03922 OmpW family 66 223 1.0E-37 T 16-09-2016 IPR005618 Outer membrane protein, OmpW GO:0019867 BER92_RS15960 0997f531a3e9ed9f9c985502c3028e9a 223 SUPERFAMILY SSF56925 55 223 1.67E-18 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS15960 0997f531a3e9ed9f9c985502c3028e9a 223 PANTHER PTHR36920 2 26 3.5E-84 T 16-09-2016 BER92_RS15960 0997f531a3e9ed9f9c985502c3028e9a 223 PANTHER PTHR36920 45 223 3.5E-84 T 16-09-2016 BER92_RS15960 0997f531a3e9ed9f9c985502c3028e9a 223 Gene3D G3DSA:2.40.160.20 44 223 6.3E-44 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS00460 00f2ceab0bafa312351e29d95575eba8 87 Pfam PF01527 Transposase 2 70 3.6E-20 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS00460 00f2ceab0bafa312351e29d95575eba8 87 PANTHER PTHR33609 1 87 3.9E-42 T 16-09-2016 BER92_RS00460 00f2ceab0bafa312351e29d95575eba8 87 SUPERFAMILY SSF46689 2 82 5.91E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS00460 00f2ceab0bafa312351e29d95575eba8 87 Gene3D G3DSA:1.10.10.60 7 83 5.1E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS14610 fe75c12d9e678de1898166ecc038abef 465 SUPERFAMILY SSF50494 232 462 3.87E-37 T 16-09-2016 IPR009003 Peptidase S1, PA clan BER92_RS14610 fe75c12d9e678de1898166ecc038abef 465 Gene3D G3DSA:2.40.10.10 260 384 4.3E-41 T 16-09-2016 BER92_RS14610 fe75c12d9e678de1898166ecc038abef 465 Pfam PF13365 Trypsin-like peptidase domain 268 422 1.3E-6 T 16-09-2016 BER92_RS14905 6b282c2802c99d953c6dbd0d79649d1f 207 SUPERFAMILY SSF47473 57 165 1.9E-14 T 16-09-2016 IPR011992 EF-hand domain pair BER92_RS14905 6b282c2802c99d953c6dbd0d79649d1f 207 Pfam PF13499 EF-hand domain pair 57 109 2.9E-7 T 16-09-2016 IPR002048 EF-hand domain GO:0005509 BER92_RS14905 6b282c2802c99d953c6dbd0d79649d1f 207 Gene3D G3DSA:1.10.238.10 36 169 1.4E-13 T 16-09-2016 IPR011992 EF-hand domain pair BER92_RS14905 6b282c2802c99d953c6dbd0d79649d1f 207 ProSitePatterns PS00018 EF-hand calcium-binding domain. 152 164 - T 16-09-2016 IPR018247 EF-Hand 1, calcium-binding site BER92_RS14905 6b282c2802c99d953c6dbd0d79649d1f 207 Pfam PF13202 EF hand 146 165 4.0E-6 T 16-09-2016 IPR002048 EF-hand domain GO:0005509 BER92_RS14905 6b282c2802c99d953c6dbd0d79649d1f 207 Pfam PF13202 EF hand 36 49 0.0067 T 16-09-2016 IPR002048 EF-hand domain GO:0005509 BER92_RS14905 6b282c2802c99d953c6dbd0d79649d1f 207 Pfam PF13202 EF hand 119 133 0.012 T 16-09-2016 IPR002048 EF-hand domain GO:0005509 BER92_RS11750 d97693b3e53026f764f3a4e2bde148ca 274 Gene3D G3DSA:3.40.50.1820 5 271 3.5E-67 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS11750 d97693b3e53026f764f3a4e2bde148ca 274 PANTHER PTHR10992:SF859 4 274 4.4E-124 T 16-09-2016 BER92_RS11750 d97693b3e53026f764f3a4e2bde148ca 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 2.1E-10 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS11750 d97693b3e53026f764f3a4e2bde148ca 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 217 231 2.1E-10 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS11750 d97693b3e53026f764f3a4e2bde148ca 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 2.1E-10 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS11750 d97693b3e53026f764f3a4e2bde148ca 274 Pfam PF00561 alpha/beta hydrolase fold 23 254 5.5E-25 T 16-09-2016 IPR000073 Alpha/beta hydrolase fold-1 BER92_RS11750 d97693b3e53026f764f3a4e2bde148ca 274 PANTHER PTHR10992 4 274 4.4E-124 T 16-09-2016 BER92_RS11750 d97693b3e53026f764f3a4e2bde148ca 274 SUPERFAMILY SSF53474 3 272 6.6E-62 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS09255 b6983bd06db4f15c3945202f5fb529f2 358 ProSitePatterns PS00018 EF-hand calcium-binding domain. 169 181 - T 16-09-2016 IPR018247 EF-Hand 1, calcium-binding site BER92_RS09255 b6983bd06db4f15c3945202f5fb529f2 358 Pfam PF01650 Peptidase C13 family 74 284 2.5E-48 T 16-09-2016 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 BER92_RS09255 b6983bd06db4f15c3945202f5fb529f2 358 SUPERFAMILY SSF52129 128 228 3.51E-6 T 16-09-2016 IPR029030 Caspase-like domain BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 Gene3D G3DSA:3.90.226.10 57 272 5.3E-53 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 148 1.7E-62 T 16-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 1.2E-48 T 16-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 1.2E-48 T 16-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 1.2E-48 T 16-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 1.2E-48 T 16-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 1.2E-48 T 16-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 1.2E-48 T 16-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 PANTHER PTHR22855 1 317 2.5E-132 T 16-09-2016 BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 SUPERFAMILY SSF52096 5 316 1.28E-104 T 16-09-2016 IPR029045 ClpP/crotonase-like domain BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 316 1.4E-154 T 16-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS06355 5d568c99cd4f1cdf5f79670e085ca69a 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 316 51.125 T 16-09-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 BER92_RS15345 f9051c2d1a2831c76da7148d8eb223ab 417 Pfam PF13688 Metallo-peptidase family M12 201 383 4.1E-25 T 16-09-2016 BER92_RS15345 f9051c2d1a2831c76da7148d8eb223ab 417 SUPERFAMILY SSF55486 200 389 2.69E-14 T 16-09-2016 BER92_RS15345 f9051c2d1a2831c76da7148d8eb223ab 417 Gene3D G3DSA:3.40.390.10 200 387 3.2E-8 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS16390 0786cda54d33fd9cbef3f5dec525bad3 92 SUPERFAMILY SSF56954 14 81 3.66E-12 T 16-09-2016 BER92_RS16390 0786cda54d33fd9cbef3f5dec525bad3 92 Gene3D G3DSA:1.20.1600.10 12 73 2.4E-14 T 16-09-2016 BER92_RS16390 0786cda54d33fd9cbef3f5dec525bad3 92 PANTHER PTHR30203:SF15 1 92 1.2E-16 T 16-09-2016 BER92_RS16390 0786cda54d33fd9cbef3f5dec525bad3 92 PANTHER PTHR30203 1 92 1.2E-16 T 16-09-2016 BER92_RS08655 49493d64762b31a8a27a08d4841222a4 220 Pfam PF13490 Putative zinc-finger 12 45 5.4E-6 T 16-09-2016 IPR027383 Putative zinc-finger BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 PANTHER PTHR30487 56 287 4.4E-114 T 16-09-2016 BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 PANTHER PTHR30487 1 35 4.4E-114 T 16-09-2016 BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 18 123 1.9E-26 T 16-09-2016 IPR010627 Peptidase A24A, N-terminal KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 Pfam PF01478 Type IV leader peptidase family 133 241 1.0E-23 T 16-09-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 210 221 4.1E-21 T 16-09-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 222 237 4.1E-21 T 16-09-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 199 209 4.1E-21 T 16-09-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 142 159 4.1E-21 T 16-09-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 PANTHER PTHR30487:SF0 56 287 4.4E-114 T 16-09-2016 BER92_RS03890 7255e4d428c9e78229206c0b1b9ac7d9 287 PANTHER PTHR30487:SF0 1 35 4.4E-114 T 16-09-2016 BER92_RS15105 80fffee23213a367dd93ab321748d614 455 Pfam PF01609 Transposase DDE domain 284 421 7.5E-8 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS15105 80fffee23213a367dd93ab321748d614 455 Pfam PF05598 Transposase domain (DUF772) 59 133 2.3E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS15105 80fffee23213a367dd93ab321748d614 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS15105 80fffee23213a367dd93ab321748d614 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS02610 c50e0793258ef9da4921b356bc3bed40 243 SMART SM00448 6 117 2.4E-34 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS02610 c50e0793258ef9da4921b356bc3bed40 243 Pfam PF04397 LytTr DNA-binding domain 148 242 1.5E-24 T 16-09-2016 IPR007492 LytTR DNA-binding domain GO:0003677 BER92_RS02610 c50e0793258ef9da4921b356bc3bed40 243 SMART SM00850 146 243 1.3E-25 T 16-09-2016 IPR007492 LytTR DNA-binding domain GO:0003677 BER92_RS02610 c50e0793258ef9da4921b356bc3bed40 243 Pfam PF00072 Response regulator receiver domain 8 117 2.2E-28 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS02610 c50e0793258ef9da4921b356bc3bed40 243 SUPERFAMILY SSF52172 5 124 1.85E-36 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS02610 c50e0793258ef9da4921b356bc3bed40 243 PANTHER PTHR26402 6 120 1.3E-41 T 16-09-2016 BER92_RS02610 c50e0793258ef9da4921b356bc3bed40 243 Gene3D G3DSA:3.40.50.2300 3 122 3.4E-38 T 16-09-2016 BER92_RS02610 c50e0793258ef9da4921b356bc3bed40 243 PANTHER PTHR26402:SF524 6 120 1.3E-41 T 16-09-2016 BER92_RS02610 c50e0793258ef9da4921b356bc3bed40 243 Gene3D G3DSA:2.40.50.40 140 202 3.9E-12 T 16-09-2016 BER92_RS00275 9803a93a1dbd2ee736cf7e2348e86210 97 SMART SM00257 45 94 2.5E-7 T 16-09-2016 IPR018392 LysM domain BER92_RS00275 9803a93a1dbd2ee736cf7e2348e86210 97 SUPERFAMILY SSF54106 46 94 2.75E-7 T 16-09-2016 IPR018392 LysM domain BER92_RS00275 9803a93a1dbd2ee736cf7e2348e86210 97 PANTHER PTHR34700 4 97 6.9E-23 T 16-09-2016 BER92_RS00275 9803a93a1dbd2ee736cf7e2348e86210 97 Pfam PF01476 LysM domain 47 94 7.5E-11 T 16-09-2016 IPR018392 LysM domain BER92_RS00275 9803a93a1dbd2ee736cf7e2348e86210 97 Gene3D G3DSA:3.10.350.10 47 95 7.9E-10 T 16-09-2016 IPR018392 LysM domain BER92_RS06915 0399c3437699ae0b70c61375f04c2d81 206 SUPERFAMILY SSF50486 4 195 3.22E-61 T 16-09-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 BER92_RS06915 0399c3437699ae0b70c61375f04c2d81 206 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 8 190 30.705 T 16-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 BER92_RS06915 0399c3437699ae0b70c61375f04c2d81 206 PANTHER PTHR10429:SF0 3 206 4.6E-74 T 16-09-2016 BER92_RS06915 0399c3437699ae0b70c61375f04c2d81 206 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 6 190 2.0E-50 T 16-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 BER92_RS06915 0399c3437699ae0b70c61375f04c2d81 206 PANTHER PTHR10429 3 206 4.6E-74 T 16-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 BER92_RS06915 0399c3437699ae0b70c61375f04c2d81 206 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 10 186 1.8E-59 T 16-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 BER92_RS06915 0399c3437699ae0b70c61375f04c2d81 206 Gene3D G3DSA:3.10.300.10 3 195 2.7E-63 T 16-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 BER92_RS08220 8d280f589f312d412ef4b06bdcfd9ff1 76 SUPERFAMILY SSF63829 22 61 2.29E-5 T 16-09-2016 BER92_RS08220 8d280f589f312d412ef4b06bdcfd9ff1 76 Gene3D G3DSA:2.120.10.30 24 50 8.3E-5 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS08220 8d280f589f312d412ef4b06bdcfd9ff1 76 Pfam PF07494 Two component regulator propeller 27 49 2.6E-6 T 16-09-2016 IPR011110 Two component regulator propeller BER92_RS10270 d7f7c716e058e664546bcd6c0d0872a0 261 SUPERFAMILY SSF117143 93 222 3.79E-34 T 16-09-2016 BER92_RS10270 d7f7c716e058e664546bcd6c0d0872a0 261 PANTHER PTHR30435:SF19 1 261 2.2E-133 T 16-09-2016 BER92_RS10270 d7f7c716e058e664546bcd6c0d0872a0 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 16-09-2016 IPR019776 Flagellar basal body rod protein, conserved site BER92_RS10270 d7f7c716e058e664546bcd6c0d0872a0 261 PANTHER PTHR30435 1 261 2.2E-133 T 16-09-2016 BER92_RS10270 d7f7c716e058e664546bcd6c0d0872a0 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 259 2.2E-24 T 16-09-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER92_RS10270 d7f7c716e058e664546bcd6c0d0872a0 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 5.8E-114 T 16-09-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 BER92_RS10270 d7f7c716e058e664546bcd6c0d0872a0 261 Pfam PF00460 Flagella basal body rod protein 5 35 8.2E-14 T 16-09-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BER92_RS10270 d7f7c716e058e664546bcd6c0d0872a0 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 1.3E-48 T 16-09-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G BER92_RS10270 d7f7c716e058e664546bcd6c0d0872a0 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 144 243 3.7E-31 T 16-09-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G BER92_RS05895 87ed4fe5e1ebe9fa58cbdd5575963099 349 PANTHER PTHR10091 1 334 2.2E-125 T 16-09-2016 BER92_RS05895 87ed4fe5e1ebe9fa58cbdd5575963099 349 SUPERFAMILY SSF74650 3 331 3.58E-95 T 16-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 BER92_RS05895 87ed4fe5e1ebe9fa58cbdd5575963099 349 PANTHER PTHR10091:SF0 1 334 2.2E-125 T 16-09-2016 BER92_RS05895 87ed4fe5e1ebe9fa58cbdd5575963099 349 Pfam PF01263 Aldose 1-epimerase 16 330 7.3E-75 T 16-09-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 BER92_RS05895 87ed4fe5e1ebe9fa58cbdd5575963099 349 PIRSF PIRSF005096 1 334 6.4E-97 T 16-09-2016 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317|UniPathway: UPA00242 BER92_RS05895 87ed4fe5e1ebe9fa58cbdd5575963099 349 Gene3D G3DSA:2.70.98.10 2 331 1.1E-104 T 16-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 BER92_RS07135 a15f36b522e2cbceff84764aec552ced 653 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 201 274 6.7E-22 T 16-09-2016 IPR020012 Motility protein FimV, N-terminal BER92_RS07135 a15f36b522e2cbceff84764aec552ced 653 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 610 652 3.0E-14 T 16-09-2016 IPR020011 Motility protein FimV, C-terminal BER92_RS17700 9822939b8a15e25b7276fc00c967520a 205 Gene3D G3DSA:3.40.50.620 43 175 1.7E-29 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS17700 9822939b8a15e25b7276fc00c967520a 205 PANTHER PTHR30336:SF4 7 186 3.2E-49 T 16-09-2016 BER92_RS17700 9822939b8a15e25b7276fc00c967520a 205 PANTHER PTHR30336 7 186 3.2E-49 T 16-09-2016 BER92_RS17700 9822939b8a15e25b7276fc00c967520a 205 Pfam PF02698 DUF218 domain 49 192 6.4E-29 T 16-09-2016 IPR003848 Domain of unknown function DUF218 BER92_RS06265 32e10f1239015b2235876ab056fed521 312 Gene3D G3DSA:3.20.20.80 19 122 8.6E-7 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS06265 32e10f1239015b2235876ab056fed521 312 SUPERFAMILY SSF51445 8 148 1.28E-12 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS12305 bab737871609625ae015c4910ccbf749 402 SUPERFAMILY SSF103473 6 396 2.49E-61 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS12305 bab737871609625ae015c4910ccbf749 402 Pfam PF07690 Major Facilitator Superfamily 23 278 3.9E-34 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS12305 bab737871609625ae015c4910ccbf749 402 Gene3D G3DSA:1.20.1250.20 19 206 4.8E-32 T 16-09-2016 BER92_RS12305 bab737871609625ae015c4910ccbf749 402 Gene3D G3DSA:1.20.1250.20 207 394 3.1E-14 T 16-09-2016 BER92_RS12305 bab737871609625ae015c4910ccbf749 402 PANTHER PTHR23501 12 397 3.6E-105 T 16-09-2016 BER92_RS12305 bab737871609625ae015c4910ccbf749 402 PANTHER PTHR23501:SF4 12 397 3.6E-105 T 16-09-2016 BER92_RS16550 d4cb3c7dd54665154bc4f63da2352cf8 284 Gene3D G3DSA:3.40.50.150 63 241 1.0E-12 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS16550 d4cb3c7dd54665154bc4f63da2352cf8 284 Pfam PF13489 Methyltransferase domain 56 204 2.0E-6 T 16-09-2016 BER92_RS16550 d4cb3c7dd54665154bc4f63da2352cf8 284 SUPERFAMILY SSF53335 65 245 1.86E-13 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS16550 d4cb3c7dd54665154bc4f63da2352cf8 284 PIRSF PIRSF031679 9 284 4.5E-111 T 16-09-2016 IPR016980 S-adenosyl-L-methionine dependent methyltransferase, Alr7345, predicted BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 PANTHER PTHR11986:SF5 1 429 1.0E-221 T 16-09-2016 BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 272 - T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 Gene3D G3DSA:3.90.1150.10 2 71 5.2E-42 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 Gene3D G3DSA:3.90.1150.10 321 426 5.2E-42 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 427 102.422 T 16-09-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 SUPERFAMILY SSF53383 1 426 1.6E-128 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 PANTHER PTHR11986 1 429 1.0E-221 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 426 2.3E-186 T 16-09-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 Pfam PF00202 Aminotransferase class-III 35 396 7.4E-76 T 16-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BER92_RS03480 b72a8bbbbcbc0c02e88626b7a59fdddc 429 Gene3D G3DSA:3.40.640.10 72 318 1.1E-79 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS03280 3987104eb8e7452595de20fd72465a40 218 SUPERFAMILY SSF53335 3 185 3.68E-43 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03280 3987104eb8e7452595de20fd72465a40 218 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 9 176 7.4E-31 T 16-09-2016 BER92_RS03280 3987104eb8e7452595de20fd72465a40 218 PANTHER PTHR11579:SF0 1 174 3.9E-28 T 16-09-2016 BER92_RS03280 3987104eb8e7452595de20fd72465a40 218 Gene3D G3DSA:3.40.50.150 4 210 4.5E-48 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03280 3987104eb8e7452595de20fd72465a40 218 PANTHER PTHR11579 1 174 3.9E-28 T 16-09-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BER92_RS14580 3e35cdf752f3a8421953a4133043e91d 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS14580 3e35cdf752f3a8421953a4133043e91d 455 Pfam PF01609 Transposase DDE domain 284 421 3.9E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14580 3e35cdf752f3a8421953a4133043e91d 455 Pfam PF05598 Transposase domain (DUF772) 59 133 2.0E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS14580 3e35cdf752f3a8421953a4133043e91d 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS03560 8589a29512d3d7f74fc61cc1513f8d58 385 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 9 361 1.4E-107 T 16-09-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- BER92_RS03560 8589a29512d3d7f74fc61cc1513f8d58 385 Pfam PF04055 Radical SAM superfamily 13 180 3.4E-21 T 16-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 BER92_RS03560 8589a29512d3d7f74fc61cc1513f8d58 385 Pfam PF06969 HemN C-terminal domain 311 373 2.9E-8 T 16-09-2016 IPR010723 HemN, C-terminal BER92_RS03560 8589a29512d3d7f74fc61cc1513f8d58 385 SMART SM00729 8 229 4.6E-48 T 16-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 BER92_RS03560 8589a29512d3d7f74fc61cc1513f8d58 385 Gene3D G3DSA:3.80.30.20 9 241 2.0E-29 T 16-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe BER92_RS03560 8589a29512d3d7f74fc61cc1513f8d58 385 PANTHER PTHR13932 7 384 9.8E-199 T 16-09-2016 BER92_RS03560 8589a29512d3d7f74fc61cc1513f8d58 385 SUPERFAMILY SSF102114 4 384 7.59E-107 T 16-09-2016 BER92_RS03560 8589a29512d3d7f74fc61cc1513f8d58 385 PANTHER PTHR13932:SF7 7 384 9.8E-199 T 16-09-2016 BER92_RS04480 038ad997fe068a7d2a278fa1bedda129 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.32 T 16-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 BER92_RS04480 038ad997fe068a7d2a278fa1bedda129 417 PANTHER PTHR11680:SF9 1 417 0.0 T 16-09-2016 BER92_RS04480 038ad997fe068a7d2a278fa1bedda129 417 PANTHER PTHR11680 1 417 0.0 T 16-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 BER92_RS04480 038ad997fe068a7d2a278fa1bedda129 417 SUPERFAMILY SSF53383 8 417 2.81E-179 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS04480 038ad997fe068a7d2a278fa1bedda129 417 Gene3D G3DSA:3.90.1150.10 286 417 3.0E-55 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS04480 038ad997fe068a7d2a278fa1bedda129 417 Gene3D G3DSA:3.40.640.10 37 285 4.7E-106 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS04480 038ad997fe068a7d2a278fa1bedda129 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 16-09-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 BER92_RS04480 038ad997fe068a7d2a278fa1bedda129 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 2.7E-181 T 16-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 BER92_RS04480 038ad997fe068a7d2a278fa1bedda129 417 PIRSF PIRSF000412 2 417 1.5E-167 T 16-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 BER92_RS13680 025e6bc54e48201277585cbfc69b85e4 152 SUPERFAMILY SSF55804 15 143 4.19E-33 T 16-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 BER92_RS13680 025e6bc54e48201277585cbfc69b85e4 152 Gene3D G3DSA:3.40.930.10 15 143 5.2E-37 T 16-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- BER92_RS13680 025e6bc54e48201277585cbfc69b85e4 152 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 49 65 - T 16-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- BER92_RS13680 025e6bc54e48201277585cbfc69b85e4 152 PANTHER PTHR30505 1 152 9.7E-56 T 16-09-2016 BER92_RS13680 025e6bc54e48201277585cbfc69b85e4 152 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 16 143 8.3E-31 T 16-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- BER92_RS13680 025e6bc54e48201277585cbfc69b85e4 152 PANTHER PTHR30505:SF6 1 152 9.7E-56 T 16-09-2016 BER92_RS02115 58cc43fa9c4e66c8aa11136aaf6a163f 106 Pfam PF13698 Domain of unknown function (DUF4156) 22 103 2.4E-9 T 16-09-2016 IPR025294 Protein of unknown function DUF4156 BER92_RS09845 aacf09a37834968334fa027e09e931d3 162 SUPERFAMILY SSF160719 33 146 1.7E-10 T 16-09-2016 BER92_RS09845 aacf09a37834968334fa027e09e931d3 162 Pfam PF04965 Gene 25-like lysozyme 33 133 2.0E-20 T 16-09-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD BER92_RS09845 aacf09a37834968334fa027e09e931d3 162 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 5 153 4.6E-39 T 16-09-2016 IPR017737 Type VI secretion system, lysozyme-related protein BER92_RS09845 aacf09a37834968334fa027e09e931d3 162 PANTHER PTHR38595 1 161 6.0E-17 T 16-09-2016 BER92_RS09845 aacf09a37834968334fa027e09e931d3 162 Gene3D G3DSA:3.10.450.40 85 146 1.6E-5 T 16-09-2016 BER92_RS12520 2006876387027ca8b660a3ae389373b1 148 PANTHER PTHR33446 6 144 8.5E-12 T 16-09-2016 BER92_RS12520 2006876387027ca8b660a3ae389373b1 148 Gene3D G3DSA:3.30.1150.10 66 146 1.6E-8 T 16-09-2016 BER92_RS12520 2006876387027ca8b660a3ae389373b1 148 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 68 145 2.1E-12 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS12520 2006876387027ca8b660a3ae389373b1 148 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 68 145 2.4E-13 T 16-09-2016 IPR006260 TonB, C-terminal GO:0006810 BER92_RS12520 2006876387027ca8b660a3ae389373b1 148 SUPERFAMILY SSF74653 65 142 1.69E-12 T 16-09-2016 BER92_RS10685 2daaa6cfd893b5688dfdb2346e4b95e4 255 Gene3D G3DSA:3.40.50.150 21 252 1.3E-25 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS10685 2daaa6cfd893b5688dfdb2346e4b95e4 255 PANTHER PTHR10108 8 243 2.7E-76 T 16-09-2016 BER92_RS10685 2daaa6cfd893b5688dfdb2346e4b95e4 255 PANTHER PTHR10108:SF849 8 243 2.7E-76 T 16-09-2016 BER92_RS10685 2daaa6cfd893b5688dfdb2346e4b95e4 255 SUPERFAMILY SSF53335 13 189 2.17E-28 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS10685 2daaa6cfd893b5688dfdb2346e4b95e4 255 Pfam PF08241 Methyltransferase domain 46 137 5.7E-15 T 16-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 Pfam PF00263 Bacterial type II and III secretion system protein 460 626 1.0E-49 T 16-09-2016 IPR004846 Type II/III secretion system GO:0009306 BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 PANTHER PTHR30604 322 632 1.5E-134 T 16-09-2016 BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 PANTHER PTHR30604 11 303 1.5E-134 T 16-09-2016 BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 571 604 - T 16-09-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 Pfam PF07660 Secretin and TonB N terminus short domain 212 258 2.5E-8 T 16-09-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 SMART SM00965 211 259 2.0E-10 T 16-09-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 186 625 9.1E-156 T 16-09-2016 IPR013355 Type IV pilus secretin PilQ GO:0009297|GO:0009306 BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 PRINTS PR00811 Bacterial general secretion pathway protein D signature 590 608 9.3E-17 T 16-09-2016 IPR001775 GspD/PilQ family BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 PRINTS PR00811 Bacterial general secretion pathway protein D signature 456 480 9.3E-17 T 16-09-2016 IPR001775 GspD/PilQ family BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 PRINTS PR00811 Bacterial general secretion pathway protein D signature 370 380 9.3E-17 T 16-09-2016 IPR001775 GspD/PilQ family BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 PRINTS PR00811 Bacterial general secretion pathway protein D signature 613 627 9.3E-17 T 16-09-2016 IPR001775 GspD/PilQ family BER92_RS03655 a550815da0c6b587a632b6690557f9bd 632 Pfam PF03958 Bacterial type II/III secretion system short domain 286 370 2.5E-13 T 16-09-2016 IPR005644 NolW-like BER92_RS06800 7377f8d153ec4d11aa8fcc5cbb4cd718 294 SUPERFAMILY SSF89069 17 84 1.96E-14 T 16-09-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 BER92_RS06800 7377f8d153ec4d11aa8fcc5cbb4cd718 294 PANTHER PTHR38104 10 229 3.4E-49 T 16-09-2016 BER92_RS06800 7377f8d153ec4d11aa8fcc5cbb4cd718 294 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 18 92 1.7E-15 T 16-09-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 BER92_RS11655 9cd38523bcbeced358d0b53e3ea6c54c 126 PANTHER PTHR26402:SF551 7 120 9.1E-38 T 16-09-2016 BER92_RS11655 9cd38523bcbeced358d0b53e3ea6c54c 126 Gene3D G3DSA:3.40.50.2300 4 120 2.1E-16 T 16-09-2016 BER92_RS11655 9cd38523bcbeced358d0b53e3ea6c54c 126 Pfam PF00072 Response regulator receiver domain 9 113 9.3E-7 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS11655 9cd38523bcbeced358d0b53e3ea6c54c 126 SMART SM00448 7 115 8.6E-9 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS11655 9cd38523bcbeced358d0b53e3ea6c54c 126 SUPERFAMILY SSF52172 5 120 2.7E-19 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS11655 9cd38523bcbeced358d0b53e3ea6c54c 126 PANTHER PTHR26402 7 120 9.1E-38 T 16-09-2016 BER92_RS02015 adce225f8c876d8d6f9f57a4542ac18c 119 Pfam PF13460 NAD(P)H-binding 8 91 2.5E-14 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02015 adce225f8c876d8d6f9f57a4542ac18c 119 Gene3D G3DSA:3.40.50.720 1 76 5.6E-13 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02015 adce225f8c876d8d6f9f57a4542ac18c 119 SUPERFAMILY SSF51735 1 90 3.6E-13 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 Pfam PF08238 Sel1 repeat 197 213 0.7 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 Pfam PF08238 Sel1 repeat 39 73 8.3E-7 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 Pfam PF08238 Sel1 repeat 146 181 5.1E-5 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 Pfam PF08238 Sel1 repeat 113 145 6.7E-6 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 Pfam PF08238 Sel1 repeat 74 108 6.4E-6 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 SUPERFAMILY SSF81901 19 214 2.88E-43 T 16-09-2016 BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 PANTHER PTHR11102 37 213 7.9E-39 T 16-09-2016 BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 Gene3D G3DSA:1.25.40.10 18 215 1.4E-47 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 SMART SM00671 74 109 2.8E-6 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 SMART SM00671 146 181 1.5E-4 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 SMART SM00671 38 73 1.4E-8 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 SMART SM00671 112 145 1.6E-4 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS13535 a5aeb50930e11552463a2d2a3acfd9f0 246 SMART SM00671 182 213 78.0 T 16-09-2016 IPR006597 Sel1-like repeat BER92_RS07005 7959f30824350e5914303527117915ee 342 Pfam PF01593 Flavin containing amine oxidoreductase 120 331 1.8E-4 T 16-09-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 BER92_RS07005 7959f30824350e5914303527117915ee 342 Gene3D G3DSA:3.50.50.60 122 198 2.6E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07005 7959f30824350e5914303527117915ee 342 Gene3D G3DSA:3.50.50.60 295 335 2.6E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07005 7959f30824350e5914303527117915ee 342 Gene3D G3DSA:3.50.50.60 14 52 2.6E-45 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07005 7959f30824350e5914303527117915ee 342 SUPERFAMILY SSF51905 16 208 3.3E-33 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07005 7959f30824350e5914303527117915ee 342 SUPERFAMILY SSF51905 291 333 3.3E-33 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS07005 7959f30824350e5914303527117915ee 342 Gene3D G3DSA:3.90.660.10 199 292 2.5E-51 T 16-09-2016 BER92_RS07005 7959f30824350e5914303527117915ee 342 Gene3D G3DSA:3.90.660.10 58 121 2.5E-51 T 16-09-2016 BER92_RS07005 7959f30824350e5914303527117915ee 342 PANTHER PTHR16128 7 342 1.5E-71 T 16-09-2016 BER92_RS07005 7959f30824350e5914303527117915ee 342 Pfam PF13450 NAD(P)-binding Rossmann-like domain 18 82 4.6E-17 T 16-09-2016 BER92_RS07005 7959f30824350e5914303527117915ee 342 PRINTS PR00419 Adrenodoxin reductase family signature 15 37 7.5E-7 T 16-09-2016 BER92_RS07005 7959f30824350e5914303527117915ee 342 PRINTS PR00419 Adrenodoxin reductase family signature 38 51 7.5E-7 T 16-09-2016 BER92_RS06340 d6262205e57846361106d2ba56b4e4c8 452 PANTHER PTHR33803:SF1 1 452 0.0 T 16-09-2016 BER92_RS06340 d6262205e57846361106d2ba56b4e4c8 452 Pfam PF01609 Transposase DDE domain 281 418 1.3E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06340 d6262205e57846361106d2ba56b4e4c8 452 Pfam PF05598 Transposase domain (DUF772) 56 130 2.3E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS06340 d6262205e57846361106d2ba56b4e4c8 452 PANTHER PTHR33803 1 452 0.0 T 16-09-2016 BER92_RS03545 1675a17783ba4c8e448711293bf0ce04 442 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 332 344 - T 16-09-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BER92_RS03545 1675a17783ba4c8e448711293bf0ce04 442 SUPERFAMILY SSF55920 161 435 1.96E-51 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS03545 1675a17783ba4c8e448711293bf0ce04 442 Gene3D G3DSA:3.90.230.10 158 436 5.3E-50 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS03545 1675a17783ba4c8e448711293bf0ce04 442 Pfam PF00557 Metallopeptidase family M24 168 427 3.6E-39 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS03545 1675a17783ba4c8e448711293bf0ce04 442 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 3 440 53.194 T 16-09-2016 IPR022846 Xaa-Pro dipeptidase GO:0016795 BER92_RS03545 1675a17783ba4c8e448711293bf0ce04 442 PANTHER PTHR10804 1 435 7.4E-221 T 16-09-2016 BER92_RS03545 1675a17783ba4c8e448711293bf0ce04 442 PANTHER PTHR10804:SF101 1 435 7.4E-221 T 16-09-2016 BER92_RS03185 3b86514416d7d50f2d435c7f276a83ac 349 PANTHER PTHR30006:SF10 35 344 1.8E-109 T 16-09-2016 BER92_RS03185 3b86514416d7d50f2d435c7f276a83ac 349 Gene3D G3DSA:3.40.190.10 1 141 2.6E-29 T 16-09-2016 BER92_RS03185 3b86514416d7d50f2d435c7f276a83ac 349 SUPERFAMILY SSF53850 36 341 1.09E-42 T 16-09-2016 BER92_RS03185 3b86514416d7d50f2d435c7f276a83ac 349 Pfam PF13531 Bacterial extracellular solute-binding protein 46 294 2.6E-18 T 16-09-2016 BER92_RS03185 3b86514416d7d50f2d435c7f276a83ac 349 PANTHER PTHR30006 35 344 1.8E-109 T 16-09-2016 BER92_RS03185 3b86514416d7d50f2d435c7f276a83ac 349 Gene3D G3DSA:3.40.190.10 142 286 5.0E-57 T 16-09-2016 BER92_RS00230 b885f92783a20b9138f3b942cf2dd3cb 228 Pfam PF00005 ABC transporter 20 167 7.5E-31 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS00230 b885f92783a20b9138f3b942cf2dd3cb 228 Gene3D G3DSA:3.40.50.300 2 227 2.6E-69 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00230 b885f92783a20b9138f3b942cf2dd3cb 228 SMART SM00382 29 216 1.3E-6 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS00230 b885f92783a20b9138f3b942cf2dd3cb 228 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS00230 b885f92783a20b9138f3b942cf2dd3cb 228 PANTHER PTHR24220 5 226 5.0E-119 T 16-09-2016 BER92_RS00230 b885f92783a20b9138f3b942cf2dd3cb 228 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 4 216 3.8E-83 T 16-09-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 BER92_RS00230 b885f92783a20b9138f3b942cf2dd3cb 228 PANTHER PTHR24220:SF470 5 226 5.0E-119 T 16-09-2016 BER92_RS00230 b885f92783a20b9138f3b942cf2dd3cb 228 SUPERFAMILY SSF52540 3 225 4.51E-65 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12690 fa7c11d479a3b85ac46fa48e277fcdba 199 Gene3D G3DSA:3.30.420.10 89 199 3.5E-24 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS12690 fa7c11d479a3b85ac46fa48e277fcdba 199 SUPERFAMILY SSF53098 91 199 1.2E-21 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS12690 fa7c11d479a3b85ac46fa48e277fcdba 199 Pfam PF00665 Integrase core domain 92 199 2.1E-18 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS08090 38f14e53436f255195e778a08a82f1b6 119 PANTHER PTHR35604 1 119 3.1E-74 T 16-09-2016 BER92_RS08090 38f14e53436f255195e778a08a82f1b6 119 Pfam PF01609 Transposase DDE domain 4 107 6.4E-15 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS08090 38f14e53436f255195e778a08a82f1b6 119 PANTHER PTHR35604:SF2 1 119 3.1E-74 T 16-09-2016 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 Pfam PF01431 Peptidase family M13 473 663 3.1E-41 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 Pfam PF05649 Peptidase family M13 45 419 6.0E-63 T 16-09-2016 IPR008753 Peptidase M13, N-terminal domain GO:0006508 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 PANTHER PTHR11733 44 671 2.1E-160 T 16-09-2016 IPR000718 Peptidase M13 GO:0004222|GO:0006508 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 481 493 1.2E-5 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 502 518 1.2E-5 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 575 586 1.2E-5 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 SUPERFAMILY SSF55486 44 671 4.32E-136 T 16-09-2016 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 Gene3D G3DSA:3.40.390.10 462 671 1.3E-70 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 Gene3D G3DSA:3.40.390.10 301 422 1.3E-70 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS12415 d00989db868969988151b8181c9c7c01 672 PANTHER PTHR11733:SF65 44 671 2.1E-160 T 16-09-2016 BER92_RS00660 100e612ead772f734d2f4e3e72cf36cd 74 SUPERFAMILY SSF53098 1 71 1.5E-11 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS00660 100e612ead772f734d2f4e3e72cf36cd 74 Pfam PF13333 Integrase core domain 14 67 1.4E-14 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS00660 100e612ead772f734d2f4e3e72cf36cd 74 PANTHER PTHR32552 1 72 5.5E-15 T 16-09-2016 BER92_RS00660 100e612ead772f734d2f4e3e72cf36cd 74 Gene3D G3DSA:3.30.420.10 1 62 1.4E-8 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS08230 b17dd2be8f50cdb6371bf0656604c3d6 211 Pfam PF00929 Exonuclease 26 200 3.5E-24 T 16-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III BER92_RS08230 b17dd2be8f50cdb6371bf0656604c3d6 211 Gene3D G3DSA:3.30.420.10 16 208 6.5E-52 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS08230 b17dd2be8f50cdb6371bf0656604c3d6 211 TIGRFAM TIGR01298 RNaseT: ribonuclease T 16 208 1.5E-101 T 16-09-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 BER92_RS08230 b17dd2be8f50cdb6371bf0656604c3d6 211 SUPERFAMILY SSF53098 15 208 3.58E-53 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS08230 b17dd2be8f50cdb6371bf0656604c3d6 211 SMART SM00479 24 209 2.0E-21 T 16-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III BER92_RS08230 b17dd2be8f50cdb6371bf0656604c3d6 211 PANTHER PTHR30231 1 207 1.3E-118 T 16-09-2016 BER92_RS08230 b17dd2be8f50cdb6371bf0656604c3d6 211 Hamap MF_00157 Ribonuclease T [rnt]. 1 211 86.981 T 16-09-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 BER92_RS08230 b17dd2be8f50cdb6371bf0656604c3d6 211 PANTHER PTHR30231:SF2 1 207 1.3E-118 T 16-09-2016 BER92_RS15545 bbf83da2976b7824625f4ee668a40fd8 277 Pfam PF00005 ABC transporter 38 187 6.6E-31 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS15545 bbf83da2976b7824625f4ee668a40fd8 277 SUPERFAMILY SSF52540 21 247 3.88E-59 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15545 bbf83da2976b7824625f4ee668a40fd8 277 SMART SM00382 45 235 3.8E-15 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS15545 bbf83da2976b7824625f4ee668a40fd8 277 PANTHER PTHR24220 22 262 2.2E-146 T 16-09-2016 BER92_RS15545 bbf83da2976b7824625f4ee668a40fd8 277 Gene3D G3DSA:3.40.50.300 14 247 2.9E-63 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15545 bbf83da2976b7824625f4ee668a40fd8 277 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS15545 bbf83da2976b7824625f4ee668a40fd8 277 PANTHER PTHR24220:SF483 22 262 2.2E-146 T 16-09-2016 BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 PANTHER PTHR10314 17 401 1.4E-222 T 16-09-2016 BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 91 105 - T 16-09-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 64 388 8.3E-48 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 12 401 50.617 T 16-09-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 PIRSF PIRSF001413 3 405 1.8E-155 T 16-09-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 Gene3D G3DSA:3.40.50.1100 109 187 5.2E-21 T 16-09-2016 BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 PANTHER PTHR10314:SF3 17 401 1.4E-222 T 16-09-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 SUPERFAMILY SSF53686 13 399 8.51E-143 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 17 400 2.8E-185 T 16-09-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 BER92_RS07175 aab303de8a4068c78b46a610a344bba6 405 Gene3D G3DSA:3.40.50.1100 188 399 2.3E-93 T 16-09-2016 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 Gene3D G3DSA:3.30.70.20 472 536 2.5E-5 T 16-09-2016 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 PANTHER PTHR10617 13 470 1.6E-199 T 16-09-2016 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 SUPERFAMILY SSF54373 218 311 4.71E-30 T 16-09-2016 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 Pfam PF13450 NAD(P)-binding Rossmann-like domain 26 69 4.7E-6 T 16-09-2016 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 447 547 1.9E-43 T 16-09-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 Gene3D G3DSA:3.50.50.60 19 288 6.1E-41 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 SUPERFAMILY SSF51905 313 429 3.05E-44 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 SUPERFAMILY SSF51905 17 217 3.05E-44 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 PANTHER PTHR10617:SF98 13 470 1.6E-199 T 16-09-2016 BER92_RS15565 18008f58e322d3072c7f38d76e94186e 549 SUPERFAMILY SSF54862 450 548 6.7E-24 T 16-09-2016 BER92_RS16900 6dea152c80a455ff5f0ca0ea28b70541 271 PANTHER PTHR33146 4 270 6.5E-67 T 16-09-2016 BER92_RS16900 6dea152c80a455ff5f0ca0ea28b70541 271 Pfam PF02265 S1/P1 Nuclease 27 268 2.9E-63 T 16-09-2016 IPR003154 S1/P1 nuclease GO:0003676|GO:0004519|GO:0006308 BER92_RS16900 6dea152c80a455ff5f0ca0ea28b70541 271 Gene3D G3DSA:1.10.575.10 27 269 1.7E-69 T 16-09-2016 IPR008947 Phospholipase C/P1 nuclease domain GO:0016788 BER92_RS16900 6dea152c80a455ff5f0ca0ea28b70541 271 SUPERFAMILY SSF48537 27 266 3.14E-60 T 16-09-2016 IPR008947 Phospholipase C/P1 nuclease domain GO:0016788 BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 88 131 7.2E-8 T 16-09-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 SUPERFAMILY SSF46604 87 135 2.54E-10 T 16-09-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 83 4.2E-27 T 16-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 132 2.3E-42 T 16-09-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 85 2.0E-36 T 16-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 Gene3D G3DSA:1.20.5.440 91 133 9.3E-8 T 16-09-2016 BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 SUPERFAMILY SSF51344 3 85 2.09E-22 T 16-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 Gene3D G3DSA:2.60.15.10 3 90 7.0E-29 T 16-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 130 19.661 T 16-09-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS15890 708122ea3b60d649b3096a4b1af85972 140 PANTHER PTHR13822 1 139 5.6E-39 T 16-09-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 BER92_RS09485 f8febf015e3be5afbed6fafa903f92d8 160 SUPERFAMILY SSF50341 12 150 5.62E-42 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS09485 f8febf015e3be5afbed6fafa903f92d8 160 PANTHER PTHR22617 7 151 3.6E-49 T 16-09-2016 BER92_RS09485 f8febf015e3be5afbed6fafa903f92d8 160 Gene3D G3DSA:2.40.50.180 51 89 1.3E-10 T 16-09-2016 BER92_RS09485 f8febf015e3be5afbed6fafa903f92d8 160 SMART SM00260 9 146 1.3E-44 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS09485 f8febf015e3be5afbed6fafa903f92d8 160 Pfam PF01584 CheW-like domain 13 149 1.3E-39 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS09485 f8febf015e3be5afbed6fafa903f92d8 160 Gene3D G3DSA:2.30.30.40 90 140 1.8E-7 T 16-09-2016 BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 Gene3D G3DSA:1.10.3210.10 201 360 1.1E-23 T 16-09-2016 IPR006674 HD domain BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 SMART SM00448 28 143 5.1E-30 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 SMART SM00471 192 329 1.0E-5 T 16-09-2016 IPR003607 HD/PDEase domain BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 PANTHER PTHR26402:SF596 218 257 1.3E-36 T 16-09-2016 BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 PANTHER PTHR26402:SF596 28 161 1.3E-36 T 16-09-2016 BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 Gene3D G3DSA:3.40.50.2300 27 185 2.8E-34 T 16-09-2016 BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 SUPERFAMILY SSF52172 28 176 5.12E-36 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 PANTHER PTHR26402 218 257 1.3E-36 T 16-09-2016 BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 Pfam PF01966 HD domain 202 319 2.6E-19 T 16-09-2016 IPR006674 HD domain BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 Pfam PF00072 Response regulator receiver domain 30 142 6.0E-26 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 SUPERFAMILY SSF109604 170 356 6.81E-41 T 16-09-2016 BER92_RS09405 3dfb8c7d7449f02920d26952d2a1c428 378 PANTHER PTHR26402 28 161 1.3E-36 T 16-09-2016 BER92_RS05255 31b0345e2cfd71f93f26b699f054fca9 63 Gene3D G3DSA:3.30.1390.20 7 63 2.8E-23 T 16-09-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain BER92_RS05255 31b0345e2cfd71f93f26b699f054fca9 63 Pfam PF00327 Ribosomal protein L30p/L7e 10 59 1.4E-12 T 16-09-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain BER92_RS05255 31b0345e2cfd71f93f26b699f054fca9 63 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 6 63 18.681 T 16-09-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 BER92_RS05255 31b0345e2cfd71f93f26b699f054fca9 63 PIRSF PIRSF002211 5 63 8.3E-24 T 16-09-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 BER92_RS05255 31b0345e2cfd71f93f26b699f054fca9 63 SUPERFAMILY SSF55129 7 63 7.06E-17 T 16-09-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain BER92_RS05255 31b0345e2cfd71f93f26b699f054fca9 63 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 9 63 5.2E-19 T 16-09-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 BER92_RS05255 31b0345e2cfd71f93f26b699f054fca9 63 PANTHER PTHR15892 3 63 4.0E-20 T 16-09-2016 BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 Pfam PF00925 GTP cyclohydrolase II 207 362 7.9E-30 T 16-09-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 4 199 3.3E-67 T 16-09-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 37.304 T 16-09-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 SUPERFAMILY SSF55821 2 202 2.04E-81 T 16-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 PANTHER PTHR21327:SF6 1 363 1.6E-133 T 16-09-2016 BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 198 3.0E-80 T 16-09-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 Gene3D G3DSA:3.90.870.10 1 211 2.3E-95 T 16-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 PIRSF PIRSF001259 1 368 9.6E-113 T 16-09-2016 BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 PANTHER PTHR21327 1 363 1.6E-133 T 16-09-2016 BER92_RS02375 85a50ff2f677b3c54d1807c083e0353f 379 SUPERFAMILY SSF142695 204 364 9.68E-41 T 16-09-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 BER92_RS04045 01e2a1f681a44e98033d6302d313eb26 174 Pfam PF00589 Phage integrase family 10 163 3.8E-6 T 16-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS04045 01e2a1f681a44e98033d6302d313eb26 174 Gene3D G3DSA:1.10.443.10 6 163 7.9E-16 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS04045 01e2a1f681a44e98033d6302d313eb26 174 SUPERFAMILY SSF56349 6 163 4.41E-14 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS01635 2102deff335ae1b4c3c3e75bca1f9528 95 Pfam PF11191 Protein of unknown function (DUF2782) 30 95 2.1E-14 T 16-09-2016 IPR021357 Protein of unknown function DUF2782 BER92_RS18465 9975c4ce51008a7450f8a6747d112d96 448 Gene3D G3DSA:3.40.50.2000 14 263 3.5E-63 T 16-09-2016 BER92_RS18465 9975c4ce51008a7450f8a6747d112d96 448 PANTHER PTHR11926:SF394 9 425 4.1E-106 T 16-09-2016 BER92_RS18465 9975c4ce51008a7450f8a6747d112d96 448 SUPERFAMILY SSF53756 14 424 4.08E-85 T 16-09-2016 BER92_RS18465 9975c4ce51008a7450f8a6747d112d96 448 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 14 115 2.4E-10 T 16-09-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS18465 9975c4ce51008a7450f8a6747d112d96 448 Gene3D G3DSA:3.40.50.2000 264 403 1.7E-14 T 16-09-2016 BER92_RS18465 9975c4ce51008a7450f8a6747d112d96 448 PANTHER PTHR11926 9 425 4.1E-106 T 16-09-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 BER92_RS08715 86a2a9b0eeeccf7c6dc736de6aa0f977 252 PANTHER PTHR30336 1 241 3.6E-40 T 16-09-2016 BER92_RS08715 86a2a9b0eeeccf7c6dc736de6aa0f977 252 PANTHER PTHR30336:SF1 1 241 3.6E-40 T 16-09-2016 BER92_RS08715 86a2a9b0eeeccf7c6dc736de6aa0f977 252 Gene3D G3DSA:3.40.50.620 65 204 8.9E-23 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS08715 86a2a9b0eeeccf7c6dc736de6aa0f977 252 Pfam PF02698 DUF218 domain 67 230 1.7E-27 T 16-09-2016 IPR003848 Domain of unknown function DUF218 BER92_RS04025 010242055060274dbac0aed8a83e848c 235 Gene3D G3DSA:3.40.30.10 1 101 2.1E-40 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04025 010242055060274dbac0aed8a83e848c 235 PANTHER PTHR11571:SF139 1 227 2.9E-135 T 16-09-2016 BER92_RS04025 010242055060274dbac0aed8a83e848c 235 Gene3D G3DSA:1.20.1050.10 102 204 4.9E-50 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS04025 010242055060274dbac0aed8a83e848c 235 PANTHER PTHR11571 1 227 2.9E-135 T 16-09-2016 BER92_RS04025 010242055060274dbac0aed8a83e848c 235 SUPERFAMILY SSF52833 1 81 1.15E-13 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04025 010242055060274dbac0aed8a83e848c 235 Pfam PF14497 Glutathione S-transferase, C-terminal domain 109 215 4.9E-27 T 16-09-2016 IPR004046 Glutathione S-transferase, C-terminal BER92_RS04025 010242055060274dbac0aed8a83e848c 235 SUPERFAMILY SSF47616 105 231 4.3E-22 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS09860 ddd9c358e08134b3f3ac4f1dee4ea704 166 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 163 1.3E-60 T 16-09-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BER92_RS09860 ddd9c358e08134b3f3ac4f1dee4ea704 166 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 165 1.8E-59 T 16-09-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BER92_RS09860 ddd9c358e08134b3f3ac4f1dee4ea704 166 PANTHER PTHR35850:SF1 2 160 3.5E-65 T 16-09-2016 BER92_RS09860 ddd9c358e08134b3f3ac4f1dee4ea704 166 PANTHER PTHR35850 2 160 3.5E-65 T 16-09-2016 BER92_RS09860 ddd9c358e08134b3f3ac4f1dee4ea704 166 PIRSF PIRSF028301 2 166 6.8E-67 T 16-09-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BER92_RS06145 42b2833448b426640f4dde886f3cee14 62 PANTHER PTHR30562 1 62 1.6E-20 T 16-09-2016 BER92_RS06145 42b2833448b426640f4dde886f3cee14 62 SUPERFAMILY SSF82771 12 47 1.16E-5 T 16-09-2016 IPR000305 GIY-YIG nuclease superfamily BER92_RS06145 42b2833448b426640f4dde886f3cee14 62 PANTHER PTHR30562:SF10 1 62 1.6E-20 T 16-09-2016 BER92_RS14445 87762a6f761258614e170f04288f9615 149 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 138 2.6E-27 T 16-09-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 BER92_RS14445 87762a6f761258614e170f04288f9615 149 PANTHER PTHR30558:SF7 5 147 5.1E-57 T 16-09-2016 BER92_RS14445 87762a6f761258614e170f04288f9615 149 PANTHER PTHR30558 5 147 5.1E-57 T 16-09-2016 BER92_RS14445 87762a6f761258614e170f04288f9615 149 TIGRFAM TIGR02801 tolR: protein TolR 14 138 9.6E-41 T 16-09-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 BER92_RS18145 c5604e6d72dabf17e3ca6b3ca555da64 143 Pfam PF13202 EF hand 117 131 3.0E-4 T 16-09-2016 IPR002048 EF-hand domain GO:0005509 BER92_RS18145 c5604e6d72dabf17e3ca6b3ca555da64 143 ProSitePatterns PS00018 EF-hand calcium-binding domain. 118 130 - T 16-09-2016 IPR018247 EF-Hand 1, calcium-binding site BER92_RS18145 c5604e6d72dabf17e3ca6b3ca555da64 143 Gene3D G3DSA:1.10.238.10 86 133 6.9E-7 T 16-09-2016 IPR011992 EF-hand domain pair BER92_RS18145 c5604e6d72dabf17e3ca6b3ca555da64 143 SUPERFAMILY SSF47473 86 133 1.94E-6 T 16-09-2016 IPR011992 EF-hand domain pair BER92_RS01560 326b510d64302dfdab1f1fc694c8dfcc 374 PANTHER PTHR19353 13 353 2.2E-150 T 16-09-2016 BER92_RS01560 326b510d64302dfdab1f1fc694c8dfcc 374 Pfam PF00487 Fatty acid desaturase 71 337 6.2E-32 T 16-09-2016 IPR005804 Fatty acid desaturase domain GO:0006629 BER92_RS01560 326b510d64302dfdab1f1fc694c8dfcc 374 PANTHER PTHR19353:SF34 13 353 2.2E-150 T 16-09-2016 BER92_RS18685 72c7342a7bdaf00fbf505ccb93b98f27 305 Pfam PF03547 Membrane transport protein 157 296 1.3E-14 T 16-09-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 BER92_RS18685 72c7342a7bdaf00fbf505ccb93b98f27 305 Pfam PF03547 Membrane transport protein 8 138 9.1E-11 T 16-09-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 BER92_RS18685 72c7342a7bdaf00fbf505ccb93b98f27 305 PANTHER PTHR36838:SF1 1 303 2.4E-104 T 16-09-2016 BER92_RS18685 72c7342a7bdaf00fbf505ccb93b98f27 305 PANTHER PTHR36838 1 303 2.4E-104 T 16-09-2016 BER92_RS19205 6056025ec9ea40d8cecd7975a586184e 249 PANTHER PTHR30188 2 249 9.4E-86 T 16-09-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 BER92_RS19205 6056025ec9ea40d8cecd7975a586184e 249 Pfam PF02405 Permease MlaE 35 245 5.0E-68 T 16-09-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 BER92_RS19205 6056025ec9ea40d8cecd7975a586184e 249 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 4 249 8.2E-76 T 16-09-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria BER92_RS19205 6056025ec9ea40d8cecd7975a586184e 249 PANTHER PTHR30188:SF4 2 249 9.4E-86 T 16-09-2016 BER92_RS11950 a6f496fa4ee269b34d0e9a0bdab0d221 281 Gene3D G3DSA:2.40.10.10 74 158 4.9E-5 T 16-09-2016 BER92_RS11950 a6f496fa4ee269b34d0e9a0bdab0d221 281 SUPERFAMILY SSF50494 65 258 3.43E-10 T 16-09-2016 IPR009003 Peptidase S1, PA clan BER92_RS04505 fd6c7f4f187905d70e3c70632f2293f8 455 Pfam PF05598 Transposase domain (DUF772) 59 133 2.3E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS04505 fd6c7f4f187905d70e3c70632f2293f8 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS04505 fd6c7f4f187905d70e3c70632f2293f8 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS04505 fd6c7f4f187905d70e3c70632f2293f8 455 Pfam PF01609 Transposase DDE domain 284 421 1.4E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS15765 e5392763fc487bd42234ea7402748e04 130 PANTHER PTHR36121 2 94 4.8E-34 T 16-09-2016 BER92_RS15765 e5392763fc487bd42234ea7402748e04 130 PANTHER PTHR36121:SF1 2 94 4.8E-34 T 16-09-2016 BER92_RS15765 e5392763fc487bd42234ea7402748e04 130 Gene3D G3DSA:1.10.150.20 5 82 3.2E-25 T 16-09-2016 BER92_RS15765 e5392763fc487bd42234ea7402748e04 130 Pfam PF04994 TfoX C-terminal domain 5 78 2.7E-26 T 16-09-2016 IPR007077 TfoX, C-terminal BER92_RS10305 6faf0175ac8760dfcca4e76cef59748b 441 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 10 106 5.4E-15 T 16-09-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 BER92_RS10305 6faf0175ac8760dfcca4e76cef59748b 441 PANTHER PTHR30288 1 441 8.4E-87 T 16-09-2016 BER92_RS10305 6faf0175ac8760dfcca4e76cef59748b 441 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 214 430 2.6E-46 T 16-09-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 BER92_RS10305 6faf0175ac8760dfcca4e76cef59748b 441 Pfam PF07196 Flagellin hook IN motif 124 177 5.5E-8 T 16-09-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 BER92_RS10305 6faf0175ac8760dfcca4e76cef59748b 441 PANTHER PTHR30288:SF0 1 441 8.4E-87 T 16-09-2016 BER92_RS04515 c9caa96aab87865550849f946a043a3a 311 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 116 5.3E-15 T 16-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 BER92_RS04515 c9caa96aab87865550849f946a043a3a 311 PANTHER PTHR22604:SF131 4 300 1.5E-165 T 16-09-2016 BER92_RS04515 c9caa96aab87865550849f946a043a3a 311 Gene3D G3DSA:3.40.50.720 7 189 9.7E-28 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS04515 c9caa96aab87865550849f946a043a3a 311 PANTHER PTHR22604 4 300 1.5E-165 T 16-09-2016 BER92_RS04515 c9caa96aab87865550849f946a043a3a 311 SUPERFAMILY SSF51735 4 168 2.3E-33 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06250 e8cad4d33ffa7bd319e0d4c59cbad0bc 776 SUPERFAMILY SSF82171 176 499 2.35E-33 T 16-09-2016 BER92_RS06250 e8cad4d33ffa7bd319e0d4c59cbad0bc 776 PANTHER PTHR11731 1 772 0.0 T 16-09-2016 BER92_RS06250 e8cad4d33ffa7bd319e0d4c59cbad0bc 776 SUPERFAMILY SSF53474 501 760 7.73E-52 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS06250 e8cad4d33ffa7bd319e0d4c59cbad0bc 776 Gene3D G3DSA:2.140.10.30 59 496 1.0E-60 T 16-09-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BER92_RS06250 e8cad4d33ffa7bd319e0d4c59cbad0bc 776 Pfam PF00326 Prolyl oligopeptidase family 566 761 1.6E-49 T 16-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BER92_RS06250 e8cad4d33ffa7bd319e0d4c59cbad0bc 776 Gene3D G3DSA:3.40.50.1820 501 761 1.7E-55 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS06250 e8cad4d33ffa7bd319e0d4c59cbad0bc 776 PANTHER PTHR11731:SF118 1 772 0.0 T 16-09-2016 BER92_RS06250 e8cad4d33ffa7bd319e0d4c59cbad0bc 776 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 175 470 1.8E-66 T 16-09-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BER92_RS06830 bea229beb524cad938665fc052e48cde 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS06830 bea229beb524cad938665fc052e48cde 284 Pfam PF00665 Integrase core domain 119 233 3.1E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS06830 bea229beb524cad938665fc052e48cde 284 Gene3D G3DSA:3.30.420.10 113 272 3.4E-36 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS06830 bea229beb524cad938665fc052e48cde 284 PANTHER PTHR32552 12 282 2.8E-87 T 16-09-2016 BER92_RS06830 bea229beb524cad938665fc052e48cde 284 SUPERFAMILY SSF53098 112 278 3.67E-41 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS17705 389c61ce57a21e6305b50d1e28c47845 319 PANTHER PTHR10314:SF36 6 316 2.9E-123 T 16-09-2016 BER92_RS17705 389c61ce57a21e6305b50d1e28c47845 319 PANTHER PTHR10314 6 316 2.9E-123 T 16-09-2016 BER92_RS17705 389c61ce57a21e6305b50d1e28c47845 319 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 16-09-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BER92_RS17705 389c61ce57a21e6305b50d1e28c47845 319 Gene3D G3DSA:3.40.50.1100 74 314 2.8E-59 T 16-09-2016 BER92_RS17705 389c61ce57a21e6305b50d1e28c47845 319 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 20 306 4.3E-67 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS17705 389c61ce57a21e6305b50d1e28c47845 319 SUPERFAMILY SSF53686 8 315 3.14E-78 T 16-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER92_RS03660 a3abc25a5714bac880089df9b7abd26c 322 PANTHER PTHR35604 2 322 3.0E-239 T 16-09-2016 BER92_RS03660 a3abc25a5714bac880089df9b7abd26c 322 Pfam PF01609 Transposase DDE domain 135 310 9.6E-30 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03660 a3abc25a5714bac880089df9b7abd26c 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.4E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS03660 a3abc25a5714bac880089df9b7abd26c 322 PANTHER PTHR35604:SF2 2 322 3.0E-239 T 16-09-2016 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 Gene3D G3DSA:3.30.9.10 270 357 1.1E-7 T 16-09-2016 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 Gene3D G3DSA:3.30.9.10 144 191 1.1E-7 T 16-09-2016 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 SUPERFAMILY SSF51905 6 58 2.33E-49 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 SUPERFAMILY SSF51905 111 270 2.33E-49 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 SUPERFAMILY SSF51905 358 415 2.33E-49 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 SUPERFAMILY SSF54373 270 357 1.28E-15 T 16-09-2016 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 5.5E-5 T 16-09-2016 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 410 416 5.5E-5 T 16-09-2016 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 Gene3D G3DSA:3.50.50.60 358 415 3.2E-57 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 Gene3D G3DSA:3.50.50.60 5 62 3.2E-57 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 Gene3D G3DSA:3.50.50.60 112 134 3.2E-57 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 Gene3D G3DSA:3.50.50.60 192 269 3.2E-57 T 16-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 PANTHER PTHR13847 111 415 4.0E-60 T 16-09-2016 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 PANTHER PTHR13847 4 64 4.0E-60 T 16-09-2016 BER92_RS12435 da3136c152f8330c050205b41958c5db 416 Pfam PF01266 FAD dependent oxidoreductase 7 397 2.2E-58 T 16-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BER92_RS07540 687a0cff833ae4397f7485884694aa23 496 PANTHER PTHR30203:SF3 2 495 4.8E-191 T 16-09-2016 BER92_RS07540 687a0cff833ae4397f7485884694aa23 496 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 487 5.3E-84 T 16-09-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 BER92_RS07540 687a0cff833ae4397f7485884694aa23 496 PANTHER PTHR30203 2 495 4.8E-191 T 16-09-2016 BER92_RS07540 687a0cff833ae4397f7485884694aa23 496 Pfam PF02321 Outer membrane efflux protein 68 275 8.5E-26 T 16-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 BER92_RS07540 687a0cff833ae4397f7485884694aa23 496 Pfam PF02321 Outer membrane efflux protein 309 485 1.3E-25 T 16-09-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 BER92_RS07540 687a0cff833ae4397f7485884694aa23 496 SUPERFAMILY SSF56954 2 30 2.88E-94 T 16-09-2016 BER92_RS07540 687a0cff833ae4397f7485884694aa23 496 SUPERFAMILY SSF56954 59 489 2.88E-94 T 16-09-2016 BER92_RS07540 687a0cff833ae4397f7485884694aa23 496 Gene3D G3DSA:1.20.1600.10 54 491 1.5E-93 T 16-09-2016 BER92_RS11175 f17ecff1776f0b9e6f638f34fdb98804 327 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 9 312 29.005 T 16-09-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 BER92_RS11175 f17ecff1776f0b9e6f638f34fdb98804 327 PANTHER PTHR11088 3 304 1.4E-106 T 16-09-2016 BER92_RS11175 f17ecff1776f0b9e6f638f34fdb98804 327 SUPERFAMILY SSF52540 11 154 1.54E-19 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11175 f17ecff1776f0b9e6f638f34fdb98804 327 Gene3D G3DSA:3.40.50.300 8 175 9.8E-52 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11175 f17ecff1776f0b9e6f638f34fdb98804 327 Gene3D G3DSA:1.10.287.890 205 291 1.7E-27 T 16-09-2016 BER92_RS11175 f17ecff1776f0b9e6f638f34fdb98804 327 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 10 302 3.0E-90 T 16-09-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 BER92_RS11175 f17ecff1776f0b9e6f638f34fdb98804 327 Pfam PF01715 IPP transferase 43 292 2.4E-80 T 16-09-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 BER92_RS11175 f17ecff1776f0b9e6f638f34fdb98804 327 SUPERFAMILY SSF52540 146 239 1.48E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS11175 f17ecff1776f0b9e6f638f34fdb98804 327 SUPERFAMILY SSF52540 7 60 1.48E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS10530 c30c5530c2f3fe99386d0ce2bcfc2aba 1658 Gene3D G3DSA:1.25.10.10 3 323 6.2E-8 T 16-09-2016 IPR011989 Armadillo-like helical BER92_RS10530 c30c5530c2f3fe99386d0ce2bcfc2aba 1658 SUPERFAMILY SSF48371 3 325 1.25E-23 T 16-09-2016 IPR016024 Armadillo-type fold GO:0005488 BER92_RS17580 a07fa457e3a003723c644ed7d21bd0bd 61 Pfam PF11154 Protein of unknown function (DUF2934) 5 41 6.3E-13 T 16-09-2016 IPR021327 Protein of unknown function DUF2934 BER92_RS04810 8cbc99f94cbd33d48d56d4e3e37fbe01 300 Gene3D G3DSA:2.120.10.30 41 297 9.7E-56 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS04810 8cbc99f94cbd33d48d56d4e3e37fbe01 300 PANTHER PTHR10907:SF47 79 293 3.6E-41 T 16-09-2016 BER92_RS04810 8cbc99f94cbd33d48d56d4e3e37fbe01 300 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 44 280 3.1E-44 T 16-09-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region BER92_RS04810 8cbc99f94cbd33d48d56d4e3e37fbe01 300 SUPERFAMILY SSF63829 40 296 5.67E-57 T 16-09-2016 BER92_RS04810 8cbc99f94cbd33d48d56d4e3e37fbe01 300 PANTHER PTHR10907 79 293 3.6E-41 T 16-09-2016 BER92_RS11725 e2eea2b63486ef65c05f0cde93b61136 319 SUPERFAMILY SSF82861 39 122 4.32E-16 T 16-09-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BER92_RS11725 e2eea2b63486ef65c05f0cde93b61136 319 PANTHER PTHR30221 34 319 7.5E-102 T 16-09-2016 BER92_RS11725 e2eea2b63486ef65c05f0cde93b61136 319 SUPERFAMILY SSF82689 192 288 1.96E-26 T 16-09-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BER92_RS11725 e2eea2b63486ef65c05f0cde93b61136 319 PANTHER PTHR30221:SF7 34 319 7.5E-102 T 16-09-2016 BER92_RS11725 e2eea2b63486ef65c05f0cde93b61136 319 Gene3D G3DSA:2.30.30.60 139 188 1.2E-16 T 16-09-2016 BER92_RS11725 e2eea2b63486ef65c05f0cde93b61136 319 SUPERFAMILY SSF50182 123 189 1.83E-16 T 16-09-2016 IPR010920 LSM domain BER92_RS11725 e2eea2b63486ef65c05f0cde93b61136 319 Pfam PF00924 Mechanosensitive ion channel 81 278 7.4E-49 T 16-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BER92_RS11725 e2eea2b63486ef65c05f0cde93b61136 319 Gene3D G3DSA:3.30.70.100 192 275 5.4E-23 T 16-09-2016 BER92_RS11725 e2eea2b63486ef65c05f0cde93b61136 319 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 153 187 - T 16-09-2016 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PANTHER PTHR10422:SF26 33 614 0.0 T 16-09-2016 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 16-09-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 16-09-2016 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 Gene3D G3DSA:1.20.210.10 38 589 1.5E-193 T 16-09-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 SUPERFAMILY SSF81442 43 559 4.19E-182 T 16-09-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 6.2E-98 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 PANTHER PTHR10422 33 614 0.0 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS14805 7c4ffdf92e498478fd8e7d14dfa5e8b0 666 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 504 4.7E-140 T 16-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 BER92_RS17625 938772bd50a2c8d73a3d9d636a6ea855 574 Pfam PF03109 ABC1 family 124 242 3.9E-28 T 16-09-2016 IPR004147 UbiB domain BER92_RS17625 938772bd50a2c8d73a3d9d636a6ea855 574 PANTHER PTHR10566 27 567 4.6E-139 T 16-09-2016 BER92_RS17625 938772bd50a2c8d73a3d9d636a6ea855 574 SUPERFAMILY SSF56112 205 326 1.09E-20 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS17625 938772bd50a2c8d73a3d9d636a6ea855 574 SUPERFAMILY SSF56112 106 170 1.09E-20 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS17625 938772bd50a2c8d73a3d9d636a6ea855 574 PANTHER PTHR10566:SF10 27 567 4.6E-139 T 16-09-2016 BER92_RS04005 4634089bb024d6a77ece0301dedc9849 155 Pfam PF12098 Protein of unknown function (DUF3574) 46 155 2.5E-33 T 16-09-2016 IPR021957 Protein of unknown function DUF3574 BER92_RS05710 31fdd02bec6e55ff499083e14947cbbb 459 Gene3D G3DSA:3.40.710.10 76 402 9.5E-73 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS05710 31fdd02bec6e55ff499083e14947cbbb 459 Pfam PF00144 Beta-lactamase 79 405 2.1E-65 T 16-09-2016 IPR001466 Beta-lactamase-related BER92_RS05710 31fdd02bec6e55ff499083e14947cbbb 459 SUPERFAMILY SSF56601 75 424 9.86E-75 T 16-09-2016 IPR012338 Beta-lactamase/transpeptidase-like BER92_RS05710 31fdd02bec6e55ff499083e14947cbbb 459 PANTHER PTHR22935:SF68 1 427 2.3E-151 T 16-09-2016 BER92_RS05710 31fdd02bec6e55ff499083e14947cbbb 459 PANTHER PTHR22935 1 427 2.3E-151 T 16-09-2016 BER92_RS15610 fb4b58597d867bc986e96540366f55d0 351 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 323 1.0E-100 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15610 fb4b58597d867bc986e96540366f55d0 351 Gene3D G3DSA:3.40.50.720 4 190 5.1E-64 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15610 fb4b58597d867bc986e96540366f55d0 351 PANTHER PTHR10366 3 348 4.4E-168 T 16-09-2016 BER92_RS15610 fb4b58597d867bc986e96540366f55d0 351 Gene3D G3DSA:3.90.25.10 191 335 1.4E-55 T 16-09-2016 BER92_RS15610 fb4b58597d867bc986e96540366f55d0 351 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 335 1.9E-155 T 16-09-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 BER92_RS15610 fb4b58597d867bc986e96540366f55d0 351 SUPERFAMILY SSF51735 3 341 1.33E-92 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15610 fb4b58597d867bc986e96540366f55d0 351 PANTHER PTHR10366:SF437 3 348 4.4E-168 T 16-09-2016 BER92_RS07630 d1219644dc275eb0b978f24cdbcac33e 82 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 1 70 8.0E-19 T 16-09-2016 IPR022789 Antitoxin ParD BER92_RS07630 d1219644dc275eb0b978f24cdbcac33e 82 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 3 51 1.2E-8 T 16-09-2016 IPR022789 Antitoxin ParD BER92_RS07630 d1219644dc275eb0b978f24cdbcac33e 82 SUPERFAMILY SSF47598 2 42 3.34E-5 T 16-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 BER92_RS11930 c58a3fbc9d1fdae7bb1fcd6e3152cd63 322 Pfam PF01609 Transposase DDE domain 135 310 9.8E-32 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11930 c58a3fbc9d1fdae7bb1fcd6e3152cd63 322 PANTHER PTHR35604:SF2 2 322 2.7E-242 T 16-09-2016 BER92_RS11930 c58a3fbc9d1fdae7bb1fcd6e3152cd63 322 PANTHER PTHR35604 2 322 2.7E-242 T 16-09-2016 BER92_RS11930 c58a3fbc9d1fdae7bb1fcd6e3152cd63 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS17245 1d28fdf5e3f984183688163429222e54 224 PANTHER PTHR30128 84 205 2.1E-25 T 16-09-2016 BER92_RS17245 1d28fdf5e3f984183688163429222e54 224 Gene3D G3DSA:3.30.1330.60 81 200 9.0E-32 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS17245 1d28fdf5e3f984183688163429222e54 224 Pfam PF00691 OmpA family 92 196 2.3E-19 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS17245 1d28fdf5e3f984183688163429222e54 224 SUPERFAMILY SSF103088 82 200 3.79E-28 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS06235 71486d3168f76fe2551b02542588c0c9 598 PANTHER PTHR33361 23 591 6.6E-222 T 16-09-2016 BER92_RS06235 71486d3168f76fe2551b02542588c0c9 598 PANTHER PTHR33361:SF6 23 591 6.6E-222 T 16-09-2016 BER92_RS06235 71486d3168f76fe2551b02542588c0c9 598 Pfam PF05960 Bacterial protein of unknown function (DUF885) 55 583 2.0E-160 T 16-09-2016 IPR010281 Protein of unknown function DUF885 BER92_RS01685 a544c938d7080b5febbe3e3e618480c6 89 Gene3D G3DSA:1.10.1200.10 5 86 3.8E-18 T 16-09-2016 IPR009081 Phosphopantetheine binding ACP domain BER92_RS01685 a544c938d7080b5febbe3e3e618480c6 89 SUPERFAMILY SSF47336 5 85 7.72E-13 T 16-09-2016 IPR009081 Phosphopantetheine binding ACP domain BER92_RS01685 a544c938d7080b5febbe3e3e618480c6 89 Pfam PF00550 Phosphopantetheine attachment site 10 65 4.8E-9 T 16-09-2016 IPR009081 Phosphopantetheine binding ACP domain BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 319 359 1.8E-9 T 16-09-2016 IPR006530 YD repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 193 234 9.9E-6 T 16-09-2016 IPR006530 YD repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 537 577 7.3E-5 T 16-09-2016 IPR006530 YD repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 361 397 2.4E-5 T 16-09-2016 IPR006530 YD repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 151 192 2.2E-6 T 16-09-2016 IPR006530 YD repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 277 317 9.2E-5 T 16-09-2016 IPR006530 YD repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 109 148 1.0E-8 T 16-09-2016 IPR006530 YD repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 235 275 1.8E-8 T 16-09-2016 IPR006530 YD repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 PANTHER PTHR32305 579 708 2.0E-74 T 16-09-2016 BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 Pfam PF05593 RHS Repeat 235 271 2.3E-8 T 16-09-2016 IPR031325 RHS repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 Pfam PF05593 RHS Repeat 151 188 8.1E-8 T 16-09-2016 IPR031325 RHS repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 Pfam PF05593 RHS Repeat 173 208 1.2E-8 T 16-09-2016 IPR031325 RHS repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 Pfam PF05593 RHS Repeat 109 146 3.3E-10 T 16-09-2016 IPR031325 RHS repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 Pfam PF05593 RHS Repeat 341 376 1.5E-7 T 16-09-2016 IPR031325 RHS repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 Pfam PF05593 RHS Repeat 537 573 2.4E-8 T 16-09-2016 IPR031325 RHS repeat BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 PANTHER PTHR32305:SF6 1 496 2.0E-74 T 16-09-2016 BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 PANTHER PTHR32305:SF6 579 708 2.0E-74 T 16-09-2016 BER92_RS11380 b30657e426731801457ab9ac7c529ffb 865 PANTHER PTHR32305 1 496 2.0E-74 T 16-09-2016 BER92_RS14225 99379bce501d48971a2c3ded8313908a 472 Gene3D G3DSA:1.10.150.20 183 217 9.5E-4 T 16-09-2016 BER92_RS14225 99379bce501d48971a2c3ded8313908a 472 PANTHER PTHR35369:SF2 1 472 7.7E-189 T 16-09-2016 BER92_RS14225 99379bce501d48971a2c3ded8313908a 472 SUPERFAMILY SSF56672 1 228 4.89E-29 T 16-09-2016 BER92_RS14225 99379bce501d48971a2c3ded8313908a 472 Pfam PF00817 impB/mucB/samB family 24 149 1.7E-5 T 16-09-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS14225 99379bce501d48971a2c3ded8313908a 472 PANTHER PTHR35369 1 472 7.7E-189 T 16-09-2016 BER92_RS06815 58b553ba4156572bcc4619851c569be2 310 PANTHER PTHR35604 2 310 1.3E-234 T 16-09-2016 BER92_RS06815 58b553ba4156572bcc4619851c569be2 310 Pfam PF05598 Transposase domain (DUF772) 50 122 2.3E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS06815 58b553ba4156572bcc4619851c569be2 310 Pfam PF01609 Transposase DDE domain 135 310 2.8E-30 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06815 58b553ba4156572bcc4619851c569be2 310 PANTHER PTHR35604:SF2 2 310 1.3E-234 T 16-09-2016 BER92_RS09120 e003c192f1e833d3b9b57672bee7ec5a 292 Pfam PF13481 AAA domain 8 183 1.1E-34 T 16-09-2016 BER92_RS09120 e003c192f1e833d3b9b57672bee7ec5a 292 Gene3D G3DSA:3.40.50.300 4 277 7.9E-85 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09120 e003c192f1e833d3b9b57672bee7ec5a 292 SUPERFAMILY SSF52540 14 182 1.83E-13 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12660 4be26b0324627e06505f526d684808c9 634 SMART SM00387 30 187 6.3E-10 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS12660 4be26b0324627e06505f526d684808c9 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 185 4.4E-14 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS12660 4be26b0324627e06505f526d684808c9 634 Gene3D G3DSA:3.30.565.10 9 243 4.7E-80 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PANTHER PTHR11528:SF44 2 631 0.0 T 16-09-2016 BER92_RS12660 4be26b0324627e06505f526d684808c9 634 SUPERFAMILY SSF54211 236 491 2.88E-93 T 16-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold BER92_RS12660 4be26b0324627e06505f526d684808c9 634 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 630 31.789 T 16-09-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 BER92_RS12660 4be26b0324627e06505f526d684808c9 634 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 16-09-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 BER92_RS12660 4be26b0324627e06505f526d684808c9 634 SUPERFAMILY SSF110942 518 630 1.06E-32 T 16-09-2016 BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PIRSF PIRSF002583 2 634 2.5E-204 T 16-09-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PRINTS PR00775 90kDa heat shock protein signature 29 51 1.9E-58 T 16-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PRINTS PR00775 90kDa heat shock protein signature 78 95 1.9E-58 T 16-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PRINTS PR00775 90kDa heat shock protein signature 123 145 1.9E-58 T 16-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PRINTS PR00775 90kDa heat shock protein signature 193 211 1.9E-58 T 16-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PRINTS PR00775 90kDa heat shock protein signature 8 28 1.9E-58 T 16-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PRINTS PR00775 90kDa heat shock protein signature 96 113 1.9E-58 T 16-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PRINTS PR00775 90kDa heat shock protein signature 175 192 1.9E-58 T 16-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal BER92_RS12660 4be26b0324627e06505f526d684808c9 634 Pfam PF00183 Hsp90 protein 228 629 4.6E-124 T 16-09-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 BER92_RS12660 4be26b0324627e06505f526d684808c9 634 PANTHER PTHR11528 2 631 0.0 T 16-09-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 BER92_RS12660 4be26b0324627e06505f526d684808c9 634 SUPERFAMILY SSF55874 8 218 1.96E-64 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 Gene3D G3DSA:3.40.390.10 316 437 1.9E-100 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 Gene3D G3DSA:3.40.390.10 477 689 1.9E-100 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 PANTHER PTHR11733:SF145 3 689 0.0 T 16-09-2016 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 PANTHER PTHR11733 3 689 0.0 T 16-09-2016 IPR000718 Peptidase M13 GO:0004222|GO:0006508 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 SUPERFAMILY SSF55486 37 689 1.21E-193 T 16-09-2016 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 Pfam PF01431 Peptidase family M13 486 686 1.7E-60 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 517 533 2.1E-17 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 478 490 2.1E-17 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 496 508 2.1E-17 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 588 599 2.1E-17 T 16-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BER92_RS17085 7330d171b6256255bc1fdade259ae8b8 689 Pfam PF05649 Peptidase family M13 49 434 4.9E-88 T 16-09-2016 IPR008753 Peptidase M13, N-terminal domain GO:0006508 BER92_RS13675 d3d6a48d44e085e9238ac4eb65cb9252 105 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 4.8E-23 T 16-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 BER92_RS13675 d3d6a48d44e085e9238ac4eb65cb9252 105 SUPERFAMILY SSF69754 1 99 1.96E-30 T 16-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 BER92_RS13675 d3d6a48d44e085e9238ac4eb65cb9252 105 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 1.8E-25 T 16-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 BER92_RS13675 d3d6a48d44e085e9238ac4eb65cb9252 105 Gene3D G3DSA:3.30.160.100 1 95 6.2E-30 T 16-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 BER92_RS13675 d3d6a48d44e085e9238ac4eb65cb9252 105 PANTHER PTHR33231 1 99 1.2E-32 T 16-09-2016 BER92_RS07810 93133027374ada7ca951f94814b858de 787 Gene3D G3DSA:3.40.50.300 407 482 1.3E-10 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07810 93133027374ada7ca951f94814b858de 787 Gene3D G3DSA:3.40.50.300 574 689 1.3E-10 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07810 93133027374ada7ca951f94814b858de 787 SUPERFAMILY SSF52540 355 691 8.46E-36 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07810 93133027374ada7ca951f94814b858de 787 SMART SM00382 407 672 0.004 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS07810 93133027374ada7ca951f94814b858de 787 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 141 346 2.2E-49 T 16-09-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 BER92_RS07810 93133027374ada7ca951f94814b858de 787 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 3 769 1.1E-214 T 16-09-2016 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 BER92_RS10135 eead52c1b9233621330da937d27a3b76 641 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 53 220 2.2E-32 T 16-09-2016 IPR024618 Domain of unknown function DUF3857 BER92_RS10135 eead52c1b9233621330da937d27a3b76 641 SUPERFAMILY SSF54001 263 344 4.9E-10 T 16-09-2016 BER92_RS10135 eead52c1b9233621330da937d27a3b76 641 Pfam PF01841 Transglutaminase-like superfamily 268 341 3.9E-8 T 16-09-2016 IPR002931 Transglutaminase-like BER92_RS04635 729815eb7e83bcc38201f45792dcdbe3 199 Gene3D G3DSA:3.40.50.300 1 195 8.5E-61 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04635 729815eb7e83bcc38201f45792dcdbe3 199 ProSitePatterns PS00211 ABC transporters family signature. 114 128 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS04635 729815eb7e83bcc38201f45792dcdbe3 199 PANTHER PTHR24220:SF509 1 199 2.1E-88 T 16-09-2016 BER92_RS04635 729815eb7e83bcc38201f45792dcdbe3 199 PANTHER PTHR24220 1 199 2.1E-88 T 16-09-2016 BER92_RS04635 729815eb7e83bcc38201f45792dcdbe3 199 Pfam PF00005 ABC transporter 1 141 3.0E-31 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS04635 729815eb7e83bcc38201f45792dcdbe3 199 SUPERFAMILY SSF52540 1 195 1.86E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04635 729815eb7e83bcc38201f45792dcdbe3 199 SMART SM00382 5 188 5.2E-15 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS02470 8e0a6c3bad2159cfab2666e7761e0df1 86 PANTHER PTHR35604 38 80 4.6E-20 T 16-09-2016 BER92_RS02470 8e0a6c3bad2159cfab2666e7761e0df1 86 Pfam PF05598 Transposase domain (DUF772) 34 74 1.0E-6 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS02470 8e0a6c3bad2159cfab2666e7761e0df1 86 PANTHER PTHR35604:SF2 38 80 4.6E-20 T 16-09-2016 BER92_RS18045 21c8e14a59148afce19e282604349b11 309 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 8 301 1.4E-61 T 16-09-2016 IPR005218 Diacylglycerol/lipid kinase BER92_RS18045 21c8e14a59148afce19e282604349b11 309 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 3 308 49.463 T 16-09-2016 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 BER92_RS18045 21c8e14a59148afce19e282604349b11 309 PANTHER PTHR12358 27 306 5.0E-59 T 16-09-2016 BER92_RS18045 21c8e14a59148afce19e282604349b11 309 SUPERFAMILY SSF111331 4 303 1.35E-65 T 16-09-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain BER92_RS18045 21c8e14a59148afce19e282604349b11 309 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 5 307 1.5E-141 T 16-09-2016 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 BER92_RS18045 21c8e14a59148afce19e282604349b11 309 Pfam PF00781 Diacylglycerol kinase catalytic domain 6 129 1.1E-25 T 16-09-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 BER92_RS18045 21c8e14a59148afce19e282604349b11 309 SMART SM00046 3 130 1.6E-15 T 16-09-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 BER92_RS15125 3ed04895db4bd542b01cf73094847ecb 408 SUPERFAMILY SSF56059 97 321 5.4E-30 T 16-09-2016 BER92_RS15125 3ed04895db4bd542b01cf73094847ecb 408 Gene3D G3DSA:3.30.470.20 114 331 9.4E-13 T 16-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 BER92_RS03955 675fc8c769609c11b68df8f53ff4d0dd 331 SUPERFAMILY SSF55174 25 75 3.06E-5 T 16-09-2016 BER92_RS03955 675fc8c769609c11b68df8f53ff4d0dd 331 Gene3D G3DSA:3.10.290.10 26 73 1.6E-4 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS03955 675fc8c769609c11b68df8f53ff4d0dd 331 PANTHER PTHR11079 15 329 2.3E-135 T 16-09-2016 BER92_RS03955 675fc8c769609c11b68df8f53ff4d0dd 331 SUPERFAMILY SSF55120 84 321 2.47E-76 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS03955 675fc8c769609c11b68df8f53ff4d0dd 331 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 16-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS03955 675fc8c769609c11b68df8f53ff4d0dd 331 PANTHER PTHR11079:SF73 15 329 2.3E-135 T 16-09-2016 BER92_RS03955 675fc8c769609c11b68df8f53ff4d0dd 331 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 22 319 2.3E-93 T 16-09-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS03955 675fc8c769609c11b68df8f53ff4d0dd 331 Pfam PF00849 RNA pseudouridylate synthase 99 248 1.5E-33 T 16-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS05010 60c88d6c774ccaf0bf05f9601cace4d2 260 PANTHER PTHR34383 3 257 4.9E-153 T 16-09-2016 BER92_RS05010 60c88d6c774ccaf0bf05f9601cace4d2 260 PANTHER PTHR34383:SF1 3 257 4.9E-153 T 16-09-2016 BER92_RS05010 60c88d6c774ccaf0bf05f9601cace4d2 260 SUPERFAMILY SSF52540 35 222 2.13E-27 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05010 60c88d6c774ccaf0bf05f9601cace4d2 260 Gene3D G3DSA:3.40.50.300 3 236 3.5E-95 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05010 60c88d6c774ccaf0bf05f9601cace4d2 260 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 4 228 2.3E-104 T 16-09-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 BER92_RS05010 60c88d6c774ccaf0bf05f9601cace4d2 260 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 4 227 2.8E-93 T 16-09-2016 IPR022488 Polyphosphate kinase-2-related BER92_RS05010 60c88d6c774ccaf0bf05f9601cace4d2 260 PIRSF PIRSF028756 1 253 1.8E-114 T 16-09-2016 IPR016898 Polyphosphate kinase 2 BER92_RS18655 04412675e0acf6c37acdf59f588cca1f 142 Pfam PF03061 Thioesterase superfamily 50 127 3.0E-14 T 16-09-2016 IPR006683 Thioesterase domain BER92_RS18655 04412675e0acf6c37acdf59f588cca1f 142 SUPERFAMILY SSF54637 15 139 1.44E-30 T 16-09-2016 IPR029069 HotDog domain BER92_RS18655 04412675e0acf6c37acdf59f588cca1f 142 Gene3D G3DSA:3.10.129.10 3 139 6.2E-47 T 16-09-2016 IPR029069 HotDog domain BER92_RS18655 04412675e0acf6c37acdf59f588cca1f 142 PANTHER PTHR12418 19 137 6.9E-51 T 16-09-2016 BER92_RS18655 04412675e0acf6c37acdf59f588cca1f 142 PANTHER PTHR12418:SF33 19 137 6.9E-51 T 16-09-2016 BER92_RS18655 04412675e0acf6c37acdf59f588cca1f 142 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 135 2.4E-39 T 16-09-2016 IPR003736 Phenylacetic acid degradation-related domain BER92_RS00975 1f4b2f4222dbe31d7f5acc9822e64dec 573 PANTHER PTHR33908:SF3 10 573 2.0E-141 T 16-09-2016 BER92_RS00975 1f4b2f4222dbe31d7f5acc9822e64dec 573 PANTHER PTHR33908 10 573 2.0E-141 T 16-09-2016 BER92_RS00975 1f4b2f4222dbe31d7f5acc9822e64dec 573 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 63 222 1.2E-16 T 16-09-2016 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 941 22.517 T 16-09-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:3.30.1490.20 132 155 1.8E-24 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:3.30.1490.20 202 242 1.8E-24 T 16-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 926 0.0 T 16-09-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Pfam PF00005 ABC transporter 625 861 6.3E-10 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:1.20.1580.10 253 286 1.1E-50 T 16-09-2016 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:1.20.1580.10 409 479 1.1E-50 T 16-09-2016 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:1.20.1580.10 93 131 1.1E-50 T 16-09-2016 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 ProSitePatterns PS00211 ABC transporters family signature. 831 845 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 PANTHER PTHR32282:SF2 2 963 0.0 T 16-09-2016 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 SUPERFAMILY SSF52540 616 914 1.69E-52 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:1.10.8.280 289 408 5.9E-41 T 16-09-2016 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:3.40.50.300 480 598 2.2E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:3.40.50.300 602 677 2.1E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:3.40.50.300 822 942 2.1E-60 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:3.40.50.300 6 53 2.2E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 PANTHER PTHR32282 2 963 0.0 T 16-09-2016 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 SUPERFAMILY SSF52540 3 206 6.68E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 SUPERFAMILY SSF52540 432 571 6.68E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS14865 a0c212d7b888f49a12aa68e69f62fa4b 988 Gene3D G3DSA:1.20.1580.10 695 821 9.2E-54 T 16-09-2016 BER92_RS09365 09236d27922907ac28965b24e036d62c 382 SUPERFAMILY SSF52540 1 137 2.04E-19 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09365 09236d27922907ac28965b24e036d62c 382 SUPERFAMILY SSF52540 165 304 2.04E-19 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09365 09236d27922907ac28965b24e036d62c 382 Gene3D G3DSA:3.40.50.300 1 305 2.6E-21 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09365 09236d27922907ac28965b24e036d62c 382 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 210 301 3.4E-12 T 16-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 BER92_RS17115 d80a0048e4243a6c99e83ee0a9b446a0 168 PANTHER PTHR30565 1 167 7.6E-74 T 16-09-2016 BER92_RS17115 d80a0048e4243a6c99e83ee0a9b446a0 168 Pfam PF05974 Domain of unknown function (DUF892) 5 161 1.3E-60 T 16-09-2016 IPR010287 Domain of unknown function DUF892 BER92_RS17115 d80a0048e4243a6c99e83ee0a9b446a0 168 SUPERFAMILY SSF47240 1 154 6.59E-56 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS17115 d80a0048e4243a6c99e83ee0a9b446a0 168 Gene3D G3DSA:1.20.1260.10 1 162 6.6E-69 T 16-09-2016 IPR012347 Ferritin-related BER92_RS11735 b9a2be62959fa9e2768c542a1326f951 171 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 17 116 4.6E-26 T 16-09-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 BER92_RS11735 b9a2be62959fa9e2768c542a1326f951 171 SUPERFAMILY SSF53927 14 164 7.86E-53 T 16-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 BER92_RS11735 b9a2be62959fa9e2768c542a1326f951 171 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 21 164 46.492 T 16-09-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 BER92_RS11735 b9a2be62959fa9e2768c542a1326f951 171 PANTHER PTHR11079 17 164 4.0E-40 T 16-09-2016 BER92_RS11735 b9a2be62959fa9e2768c542a1326f951 171 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 68 105 - T 16-09-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BER92_RS11735 b9a2be62959fa9e2768c542a1326f951 171 Gene3D G3DSA:3.40.140.10 15 161 1.4E-53 T 16-09-2016 BER92_RS16820 0466272ece83906418a2e5ecbca53f7b 781 SUPERFAMILY SSF55874 116 237 1.14E-12 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16820 0466272ece83906418a2e5ecbca53f7b 781 SMART SM00387 669 781 1.8E-11 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16820 0466272ece83906418a2e5ecbca53f7b 781 SUPERFAMILY SSF55874 14 67 2.66E-5 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16820 0466272ece83906418a2e5ecbca53f7b 781 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 117 211 1.2E-14 T 16-09-2016 BER92_RS16820 0466272ece83906418a2e5ecbca53f7b 781 SUPERFAMILY SSF55874 624 779 6.68E-20 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16820 0466272ece83906418a2e5ecbca53f7b 781 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 674 780 2.8E-10 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16820 0466272ece83906418a2e5ecbca53f7b 781 Gene3D G3DSA:3.30.565.10 98 239 7.7E-25 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16820 0466272ece83906418a2e5ecbca53f7b 781 Gene3D G3DSA:3.30.565.10 8 48 7.7E-25 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS16820 0466272ece83906418a2e5ecbca53f7b 781 Gene3D G3DSA:3.30.565.10 624 779 6.5E-19 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS04885 b67ea856034e191c4534d8e7854ff859 187 Pfam PF00578 AhpC/TSA family 4 132 3.3E-29 T 16-09-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 BER92_RS04885 b67ea856034e191c4534d8e7854ff859 187 PANTHER PTHR10681:SF121 1 187 5.5E-89 T 16-09-2016 BER92_RS04885 b67ea856034e191c4534d8e7854ff859 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 1.5E-95 T 16-09-2016 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BER92_RS04885 b67ea856034e191c4534d8e7854ff859 187 PIRSF PIRSF000239 1 187 5.3E-45 T 16-09-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 BER92_RS04885 b67ea856034e191c4534d8e7854ff859 187 Gene3D G3DSA:3.40.30.10 4 183 1.8E-57 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04885 b67ea856034e191c4534d8e7854ff859 187 SUPERFAMILY SSF52833 2 186 1.2E-50 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS04885 b67ea856034e191c4534d8e7854ff859 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 181 3.8E-5 T 16-09-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BER92_RS04885 b67ea856034e191c4534d8e7854ff859 187 PANTHER PTHR10681 1 187 5.5E-89 T 16-09-2016 BER92_RS11005 e96b90b67ffc1881339a86308ee310bc 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.1E-16 T 16-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BER92_RS11005 e96b90b67ffc1881339a86308ee310bc 317 Gene3D G3DSA:1.10.10.10 3 88 5.2E-20 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS11005 e96b90b67ffc1881339a86308ee310bc 317 PANTHER PTHR30126 2 305 1.2E-155 T 16-09-2016 BER92_RS11005 e96b90b67ffc1881339a86308ee310bc 317 SUPERFAMILY SSF46785 4 88 2.78E-16 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS11005 e96b90b67ffc1881339a86308ee310bc 317 Gene3D G3DSA:3.40.190.10 121 184 4.2E-5 T 16-09-2016 BER92_RS11005 e96b90b67ffc1881339a86308ee310bc 317 PANTHER PTHR30126:SF4 2 305 1.2E-155 T 16-09-2016 BER92_RS11005 e96b90b67ffc1881339a86308ee310bc 317 Pfam PF03466 LysR substrate binding domain 96 289 1.4E-21 T 16-09-2016 IPR005119 LysR, substrate-binding BER92_RS11005 e96b90b67ffc1881339a86308ee310bc 317 SUPERFAMILY SSF53850 91 290 1.68E-26 T 16-09-2016 BER92_RS11005 e96b90b67ffc1881339a86308ee310bc 317 Gene3D G3DSA:3.40.190.10 185 256 1.2E-8 T 16-09-2016 BER92_RS17075 1564f0fd55f4dc749dd339089e24cdfa 331 PANTHER PTHR11732 1 326 6.6E-203 T 16-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta BER92_RS17075 1564f0fd55f4dc749dd339089e24cdfa 331 Gene3D G3DSA:3.20.20.100 1 326 2.6E-118 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS17075 1564f0fd55f4dc749dd339089e24cdfa 331 SUPERFAMILY SSF51430 1 313 7.2E-101 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS17075 1564f0fd55f4dc749dd339089e24cdfa 331 Pfam PF00248 Aldo/keto reductase family 17 310 2.3E-74 T 16-09-2016 IPR023210 NADP-dependent oxidoreductase domain BER92_RS17075 1564f0fd55f4dc749dd339089e24cdfa 331 PANTHER PTHR11732:SF225 1 326 6.6E-203 T 16-09-2016 BER92_RS00525 888bffdc7dadd36fbd6530b70fc984e9 127 Pfam PF07653 Variant SH3 domain 2 57 6.6E-7 T 16-09-2016 IPR011511 Variant SH3 domain BER92_RS00525 888bffdc7dadd36fbd6530b70fc984e9 127 PIRSF PIRSF034961 1 114 9.2E-40 T 16-09-2016 IPR014593 Uncharacterised conserved protein UCP034961, SH3-2 BER92_RS00525 888bffdc7dadd36fbd6530b70fc984e9 127 SUPERFAMILY SSF50044 59 121 9.84E-10 T 16-09-2016 IPR001452 SH3 domain GO:0005515 BER92_RS00525 888bffdc7dadd36fbd6530b70fc984e9 127 SMART SM00326 1 59 6.1 T 16-09-2016 IPR001452 SH3 domain GO:0005515 BER92_RS00525 888bffdc7dadd36fbd6530b70fc984e9 127 SMART SM00326 61 113 3.5E-4 T 16-09-2016 IPR001452 SH3 domain GO:0005515 BER92_RS00525 888bffdc7dadd36fbd6530b70fc984e9 127 Gene3D G3DSA:2.30.30.40 3 58 5.4E-4 T 16-09-2016 BER92_RS00525 888bffdc7dadd36fbd6530b70fc984e9 127 Gene3D G3DSA:2.30.30.40 62 112 3.0E-7 T 16-09-2016 BER92_RS00525 888bffdc7dadd36fbd6530b70fc984e9 127 SUPERFAMILY SSF50044 2 60 2.82E-5 T 16-09-2016 IPR001452 SH3 domain GO:0005515 BER92_RS17950 937324cbdac47ba30203f42cfbd06bd5 42 SUPERFAMILY SSF103481 2 40 3.14E-5 T 16-09-2016 BER92_RS06455 10f761874f716ff7fca55bc0bf84d331 344 Pfam PF05229 Spore Coat Protein U domain 26 167 2.9E-16 T 16-09-2016 IPR007893 Spore coat protein U BER92_RS06455 10f761874f716ff7fca55bc0bf84d331 344 Pfam PF05229 Spore Coat Protein U domain 210 340 6.0E-34 T 16-09-2016 IPR007893 Spore coat protein U BER92_RS06455 10f761874f716ff7fca55bc0bf84d331 344 PANTHER PTHR37089 6 344 2.2E-195 T 16-09-2016 BER92_RS06455 10f761874f716ff7fca55bc0bf84d331 344 PANTHER PTHR37089:SF5 6 344 2.2E-195 T 16-09-2016 BER92_RS06455 10f761874f716ff7fca55bc0bf84d331 344 SMART SM00972 283 341 5.0E-20 T 16-09-2016 IPR007893 Spore coat protein U BER92_RS06455 10f761874f716ff7fca55bc0bf84d331 344 SMART SM00972 103 172 1.4E-8 T 16-09-2016 IPR007893 Spore coat protein U BER92_RS05955 74fccbad9d51b841aac455dd8e89ea68 426 Pfam PF05598 Transposase domain (DUF772) 44 118 7.9E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS05955 74fccbad9d51b841aac455dd8e89ea68 426 PANTHER PTHR33803 1 314 6.8E-206 T 16-09-2016 BER92_RS05955 74fccbad9d51b841aac455dd8e89ea68 426 PANTHER PTHR33803:SF1 1 314 6.8E-206 T 16-09-2016 BER92_RS16365 74378dbd747cfd543fc819c683171715 322 Pfam PF05598 Transposase domain (DUF772) 50 122 3.6E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS16365 74378dbd747cfd543fc819c683171715 322 PANTHER PTHR35604 2 322 4.8E-237 T 16-09-2016 BER92_RS16365 74378dbd747cfd543fc819c683171715 322 PANTHER PTHR35604:SF2 2 322 4.8E-237 T 16-09-2016 BER92_RS16365 74378dbd747cfd543fc819c683171715 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-29 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03465 74378dbd747cfd543fc819c683171715 322 Pfam PF05598 Transposase domain (DUF772) 50 122 3.6E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS03465 74378dbd747cfd543fc819c683171715 322 PANTHER PTHR35604 2 322 4.8E-237 T 16-09-2016 BER92_RS03465 74378dbd747cfd543fc819c683171715 322 PANTHER PTHR35604:SF2 2 322 4.8E-237 T 16-09-2016 BER92_RS03465 74378dbd747cfd543fc819c683171715 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-29 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 SUPERFAMILY SSF55831 3 264 2.09E-127 T 16-09-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 16-09-2016 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 46.272 T 16-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 Pfam PF00303 Thymidylate synthase 3 264 1.3E-118 T 16-09-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 PANTHER PTHR11548 4 264 1.0E-185 T 16-09-2016 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 Gene3D G3DSA:3.30.572.10 2 264 1.4E-128 T 16-09-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 3.2E-49 T 16-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 3.2E-49 T 16-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 3.2E-49 T 16-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 3.2E-49 T 16-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 3.2E-49 T 16-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 3 84 4.4E-42 T 16-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS04710 c9f38e309a1d57521e1eea8fa25b4922 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 85 264 2.9E-96 T 16-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 BER92_RS14160 4962747c2b8790846ac2c2142d1dd42f 218 PIRSF PIRSF028445 1 218 4.0E-125 T 16-09-2016 IPR016885 Uncharacterised conserved protein UCP028445 BER92_RS14160 4962747c2b8790846ac2c2142d1dd42f 218 SUPERFAMILY SSF53335 82 171 8.9E-15 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS14160 4962747c2b8790846ac2c2142d1dd42f 218 Gene3D G3DSA:3.40.50.150 75 174 3.0E-7 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS06090 37e112fa76b0b8910afd72a29ec0d3d0 264 Pfam PF04230 Polysaccharide pyruvyl transferase 74 209 3.6E-14 T 16-09-2016 IPR007345 Polysaccharide pyruvyl transferase BER92_RS10700 c446fda7f75b72acb6ce7d742e38fd4b 303 PANTHER PTHR22911:SF56 10 303 8.6E-179 T 16-09-2016 BER92_RS10700 c446fda7f75b72acb6ce7d742e38fd4b 303 SUPERFAMILY SSF103481 185 282 3.01E-16 T 16-09-2016 BER92_RS10700 c446fda7f75b72acb6ce7d742e38fd4b 303 PANTHER PTHR22911 10 303 8.6E-179 T 16-09-2016 BER92_RS10700 c446fda7f75b72acb6ce7d742e38fd4b 303 SUPERFAMILY SSF103481 44 145 2.62E-16 T 16-09-2016 BER92_RS10700 c446fda7f75b72acb6ce7d742e38fd4b 303 Pfam PF00892 EamA-like transporter family 150 278 1.2E-17 T 16-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 BER92_RS10700 c446fda7f75b72acb6ce7d742e38fd4b 303 Pfam PF00892 EamA-like transporter family 11 141 2.0E-16 T 16-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 BER92_RS15365 d27bf0e84dce99a47a47c45a12cc6b91 248 PANTHER PTHR36926 1 210 8.6E-71 T 16-09-2016 BER92_RS15365 d27bf0e84dce99a47a47c45a12cc6b91 248 Pfam PF02674 Colicin V production protein 2 140 6.7E-29 T 16-09-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 BER92_RS15365 d27bf0e84dce99a47a47c45a12cc6b91 248 PANTHER PTHR36926:SF1 1 210 8.6E-71 T 16-09-2016 BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 552 1.3E-286 T 16-09-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 PANTHER PTHR19211 1 553 0.0 T 16-09-2016 BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 Pfam PF12848 ABC transporter 230 306 2.4E-11 T 16-09-2016 IPR032781 ABC-transporter extension domain BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 Gene3D G3DSA:3.40.50.300 8 276 7.5E-51 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 Gene3D G3DSA:3.40.50.300 321 535 2.3E-45 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 Pfam PF00005 ABC transporter 23 191 1.6E-28 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 Pfam PF00005 ABC transporter 340 473 1.4E-23 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 SUPERFAMILY SSF52540 304 522 5.75E-47 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 PANTHER PTHR19211:SF7 1 553 0.0 T 16-09-2016 BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 SUPERFAMILY SSF52540 9 237 2.32E-48 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 SMART SM00382 31 236 4.1E-8 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS04470 6da17157f14e193e97a9694d440db2f0 553 SMART SM00382 348 526 2.8E-10 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS08870 d2e6eb5e1732afbf898ab11102c36a90 56 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 1 40 6.3E-8 T 16-09-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 BER92_RS08870 d2e6eb5e1732afbf898ab11102c36a90 56 Pfam PF04995 Heme exporter protein D (CcmD) 1 44 1.3E-10 T 16-09-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 BER92_RS16260 ab44a93df8285fdeedd60a070aa24378 163 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 92 105 2.0E-14 T 16-09-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 BER92_RS16260 ab44a93df8285fdeedd60a070aa24378 163 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 124 137 2.0E-14 T 16-09-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 BER92_RS16260 ab44a93df8285fdeedd60a070aa24378 163 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 109 123 2.0E-14 T 16-09-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 BER92_RS16260 ab44a93df8285fdeedd60a070aa24378 163 PANTHER PTHR23151 1 162 4.5E-46 T 16-09-2016 BER92_RS16260 ab44a93df8285fdeedd60a070aa24378 163 SUPERFAMILY SSF51230 88 162 1.28E-23 T 16-09-2016 IPR011053 Single hybrid motif BER92_RS16260 ab44a93df8285fdeedd60a070aa24378 163 Gene3D G3DSA:2.40.50.100 87 162 1.7E-30 T 16-09-2016 BER92_RS16260 ab44a93df8285fdeedd60a070aa24378 163 Pfam PF00364 Biotin-requiring enzyme 89 162 6.5E-22 T 16-09-2016 IPR000089 Biotin/lipoyl attachment BER92_RS16260 ab44a93df8285fdeedd60a070aa24378 163 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 162 4.6E-50 T 16-09-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 BER92_RS16260 ab44a93df8285fdeedd60a070aa24378 163 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 119 136 - T 16-09-2016 IPR001882 Biotin-binding site BER92_RS08995 1e4c399cc6b67bae493f9364952f5f27 344 PANTHER PTHR31377:SF0 1 344 8.3E-126 T 16-09-2016 BER92_RS08995 1e4c399cc6b67bae493f9364952f5f27 344 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 6 338 3.4E-107 T 16-09-2016 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 BER92_RS08995 1e4c399cc6b67bae493f9364952f5f27 344 SUPERFAMILY SSF55909 2 339 9.81E-111 T 16-09-2016 BER92_RS08995 1e4c399cc6b67bae493f9364952f5f27 344 PANTHER PTHR31377 1 344 8.3E-126 T 16-09-2016 BER92_RS08995 1e4c399cc6b67bae493f9364952f5f27 344 Gene3D G3DSA:3.75.10.10 3 341 2.4E-121 T 16-09-2016 BER92_RS10740 dd89856e3c1fb93eca4ff54bbfefb61c 323 PANTHER PTHR35243:SF9 17 146 6.8E-14 T 16-09-2016 BER92_RS10740 dd89856e3c1fb93eca4ff54bbfefb61c 323 PANTHER PTHR35243 17 146 6.8E-14 T 16-09-2016 BER92_RS14150 160b4fe06ef217ecaddb7d1ead9bb062 244 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 5 185 1.5E-56 T 16-09-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS14150 160b4fe06ef217ecaddb7d1ead9bb062 244 SUPERFAMILY SSF53098 1 176 7.21E-50 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS14150 160b4fe06ef217ecaddb7d1ead9bb062 244 Pfam PF00929 Exonuclease 4 166 5.5E-32 T 16-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III BER92_RS14150 160b4fe06ef217ecaddb7d1ead9bb062 244 Gene3D G3DSA:3.30.420.10 1 175 1.6E-59 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS14150 160b4fe06ef217ecaddb7d1ead9bb062 244 PANTHER PTHR30231 1 238 5.2E-104 T 16-09-2016 BER92_RS14150 160b4fe06ef217ecaddb7d1ead9bb062 244 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 234 1.7E-92 T 16-09-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BER92_RS14150 160b4fe06ef217ecaddb7d1ead9bb062 244 PANTHER PTHR30231:SF0 1 238 5.2E-104 T 16-09-2016 BER92_RS14150 160b4fe06ef217ecaddb7d1ead9bb062 244 SMART SM00479 2 175 7.3E-44 T 16-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 Pfam PF00009 Elongation factor Tu GTP binding domain 11 275 1.0E-47 T 16-09-2016 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 SUPERFAMILY SSF54980 391 466 4.68E-17 T 16-09-2016 IPR009022 Elongation factor G, III-V domain BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 1 527 1.8E-252 T 16-09-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 157 1.2E-20 T 16-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 16-09-2016 IPR031157 Tr-type G domain, conserved site BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 SUPERFAMILY SSF50447 259 391 1.21E-29 T 16-09-2016 IPR009000 Translation protein, beta-barrel domain BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 Gene3D G3DSA:3.30.70.870 393 462 1.2E-12 T 16-09-2016 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 Pfam PF16658 Class II release factor RF3, C-terminal domain 385 512 2.9E-46 T 16-09-2016 IPR032090 Peptide chain release factor 3, C-terminal BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 Gene3D G3DSA:2.40.30.10 290 392 4.0E-23 T 16-09-2016 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 PANTHER PTHR23115:SF69 1 182 5.8E-241 T 16-09-2016 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 SUPERFAMILY SSF52540 8 275 1.26E-84 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 PRINTS PR00315 GTP-binding elongation factor signature 63 71 2.2E-11 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 PRINTS PR00315 GTP-binding elongation factor signature 83 93 2.2E-11 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 PRINTS PR00315 GTP-binding elongation factor signature 13 26 2.2E-11 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 PRINTS PR00315 GTP-binding elongation factor signature 135 144 2.2E-11 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 PRINTS PR00315 GTP-binding elongation factor signature 99 110 2.2E-11 T 16-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 PANTHER PTHR23115:SF69 249 470 5.8E-241 T 16-09-2016 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 PANTHER PTHR23115 1 182 5.8E-241 T 16-09-2016 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 PANTHER PTHR23115 249 470 5.8E-241 T 16-09-2016 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 525 52.761 T 16-09-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 BER92_RS05810 e231690f8765fdbefb2e1e8ff1752c9b 534 Gene3D G3DSA:3.40.50.300 7 280 2.1E-66 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS04275 6ef2b297888babf8a55c4f63585cb54e 155 Pfam PF14568 SMI1-KNR4 cell-wall 22 127 4.3E-16 T 16-09-2016 BER92_RS04275 6ef2b297888babf8a55c4f63585cb54e 155 Gene3D G3DSA:3.40.1580.10 13 147 1.8E-8 T 16-09-2016 IPR018958 SMI1/KNR4-like domain BER92_RS04275 6ef2b297888babf8a55c4f63585cb54e 155 SMART SM00860 14 138 2.7E-8 T 16-09-2016 IPR018958 SMI1/KNR4-like domain BER92_RS04275 6ef2b297888babf8a55c4f63585cb54e 155 SUPERFAMILY SSF160631 14 152 6.8E-19 T 16-09-2016 BER92_RS01950 e17f01cdd080a5e609e72d468d30f1ef 505 Pfam PF03055 Retinal pigment epithelial membrane protein 60 502 7.0E-86 T 16-09-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 BER92_RS01950 e17f01cdd080a5e609e72d468d30f1ef 505 PANTHER PTHR10543 60 505 5.8E-77 T 16-09-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 BER92_RS08765 ec09310cb890589fdeaf4108dedf5f22 369 PANTHER PTHR13326 1 352 5.6E-66 T 16-09-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS08765 ec09310cb890589fdeaf4108dedf5f22 369 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 5 357 28.339 T 16-09-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS08765 ec09310cb890589fdeaf4108dedf5f22 369 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 18 168 9.8E-37 T 16-09-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS08765 ec09310cb890589fdeaf4108dedf5f22 369 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 198 351 6.4E-19 T 16-09-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS08765 ec09310cb890589fdeaf4108dedf5f22 369 SUPERFAMILY SSF55120 4 352 3.74E-87 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS00580 f2ab62123470f7851b164876d7f3563a 138 PANTHER PTHR33803:SF1 53 138 2.4E-30 T 16-09-2016 BER92_RS00580 f2ab62123470f7851b164876d7f3563a 138 PANTHER PTHR33803 53 138 2.4E-30 T 16-09-2016 BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 Pfam PF13404 AsnC-type helix-turn-helix domain 7 48 2.4E-15 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 SUPERFAMILY SSF54909 67 156 2.28E-22 T 16-09-2016 IPR011008 Dimeric alpha-beta barrel BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 1.5E-12 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 1.5E-12 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 1.5E-12 T 16-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 PANTHER PTHR30154 1 156 6.4E-101 T 16-09-2016 BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 PANTHER PTHR30154:SF23 1 156 6.4E-101 T 16-09-2016 BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 16-09-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 Gene3D G3DSA:3.30.70.920 60 144 4.6E-33 T 16-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 Gene3D G3DSA:1.10.10.10 5 58 7.8E-22 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 SMART SM00344 7 116 2.7E-32 T 16-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 SUPERFAMILY SSF46785 6 66 2.28E-15 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS18740 f8b35b88fbf8144d13ee9a7d89e52587 160 Pfam PF01037 Lrp/AsnC ligand binding domain 73 147 2.6E-23 T 16-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BER92_RS01480 f0953a868b340c72faa1ccd51c0ecace 67 Pfam PF13586 Transposase DDE domain 16 65 3.4E-11 T 16-09-2016 IPR025668 Transposase DDE domain BER92_RS10390 aac6785ad410ace8aa37ca3dbd9cd194 437 PANTHER PTHR37533 2 437 3.0E-70 T 16-09-2016 BER92_RS10390 aac6785ad410ace8aa37ca3dbd9cd194 437 PANTHER PTHR37533:SF2 2 437 3.0E-70 T 16-09-2016 BER92_RS10390 aac6785ad410ace8aa37ca3dbd9cd194 437 Pfam PF02120 Flagellar hook-length control protein FliK 318 399 1.1E-23 T 16-09-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal BER92_RS15460 00f8f3630d46f47a1b862895d7181dbb 284 Pfam PF02498 BRO family, N-terminal domain 24 114 3.4E-9 T 16-09-2016 IPR003497 BRO N-terminal domain BER92_RS15460 00f8f3630d46f47a1b862895d7181dbb 284 SMART SM01040 23 119 5.4E-22 T 16-09-2016 IPR003497 BRO N-terminal domain BER92_RS16100 a37c0016bb4a2c08fc452eadea50c9f2 284 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 233 3.1E-8 T 16-09-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 BER92_RS16100 a37c0016bb4a2c08fc452eadea50c9f2 284 PANTHER PTHR30433 1 284 1.2E-169 T 16-09-2016 BER92_RS16100 a37c0016bb4a2c08fc452eadea50c9f2 284 PANTHER PTHR30433:SF4 1 284 1.2E-169 T 16-09-2016 IPR022522 Flagellar motor stator, MotA BER92_RS16100 a37c0016bb4a2c08fc452eadea50c9f2 284 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 16-09-2016 IPR000540 Flagellar motor protein MotA, conserved site BER92_RS16100 a37c0016bb4a2c08fc452eadea50c9f2 284 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 2.5E-123 T 16-09-2016 IPR022522 Flagellar motor stator, MotA BER92_RS15600 e002b9aa9daf7a72c138c3ec8f71d96a 185 Gene3D G3DSA:2.60.120.10 2 175 6.4E-79 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS15600 e002b9aa9daf7a72c138c3ec8f71d96a 185 PANTHER PTHR21047:SF2 2 180 3.6E-72 T 16-09-2016 BER92_RS15600 e002b9aa9daf7a72c138c3ec8f71d96a 185 SUPERFAMILY SSF51182 1 176 1.62E-74 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS15600 e002b9aa9daf7a72c138c3ec8f71d96a 185 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 174 8.8E-80 T 16-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BER92_RS15600 e002b9aa9daf7a72c138c3ec8f71d96a 185 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 172 6.4E-72 T 16-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BER92_RS15600 e002b9aa9daf7a72c138c3ec8f71d96a 185 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 177 2.0E-93 T 16-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BER92_RS15600 e002b9aa9daf7a72c138c3ec8f71d96a 185 PANTHER PTHR21047 2 180 3.6E-72 T 16-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BER92_RS13615 b82b44e1c3d8e02ddf256ce1be18a4ef 265 Pfam PF11306 Protein of unknown function (DUF3108) 34 262 2.3E-30 T 16-09-2016 IPR021457 Protein of unknown function DUF3108 BER92_RS14945 bf096f2acb1527b38b60459eca0f80a4 289 PANTHER PTHR10264 43 227 5.5E-71 T 16-09-2016 IPR001972 Stomatin family GO:0016020 BER92_RS14945 bf096f2acb1527b38b60459eca0f80a4 289 SMART SM00244 58 222 1.3E-10 T 16-09-2016 IPR001107 Band 7 domain BER92_RS14945 bf096f2acb1527b38b60459eca0f80a4 289 Pfam PF01145 SPFH domain / Band 7 family 62 233 2.2E-26 T 16-09-2016 IPR001107 Band 7 domain BER92_RS14945 bf096f2acb1527b38b60459eca0f80a4 289 SUPERFAMILY SSF117892 95 224 3.92E-13 T 16-09-2016 IPR001107 Band 7 domain BER92_RS14945 bf096f2acb1527b38b60459eca0f80a4 289 PANTHER PTHR10264 250 263 5.5E-71 T 16-09-2016 IPR001972 Stomatin family GO:0016020 BER92_RS14945 bf096f2acb1527b38b60459eca0f80a4 289 PANTHER PTHR10264:SF46 250 263 5.5E-71 T 16-09-2016 BER92_RS14945 bf096f2acb1527b38b60459eca0f80a4 289 PANTHER PTHR10264:SF46 43 227 5.5E-71 T 16-09-2016 BER92_RS18700 bd83cf06d9afcd75d564564592aebafe 89 SUPERFAMILY SSF46785 5 84 2.15E-22 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS18700 bd83cf06d9afcd75d564564592aebafe 89 Gene3D G3DSA:1.10.10.10 5 84 4.7E-29 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS18700 bd83cf06d9afcd75d564564592aebafe 89 Pfam PF11625 Protein of unknown function (DUF3253) 7 84 2.6E-27 T 16-09-2016 IPR021660 Protein of unknown function DUF3253 BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 PANTHER PTHR30591 2 1116 1.4E-297 T 16-09-2016 BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 9 787 3.2E-207 T 16-09-2016 BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 9 1065 1.5E-301 T 16-09-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 Gene3D G3DSA:1.10.10.160 96 175 2.0E-14 T 16-09-2016 IPR013986 DExx box DNA helicase domain BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 PANTHER PTHR30591:SF1 2 1116 1.4E-297 T 16-09-2016 BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 PIRSF PIRSF000980 8 1112 0.0 T 16-09-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 SUPERFAMILY SSF52980 804 1105 1.29E-50 T 16-09-2016 IPR011335 Restriction endonuclease type II-like BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 8 1111 11.344 T 16-09-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 SUPERFAMILY SSF52540 9 331 1.29E-67 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS19195 6745334ecc18fb3643e4229596f30f0a 1134 SUPERFAMILY SSF52540 345 791 3.9E-75 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.4E-36 T 16-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 PRINTS PR01798 Succinyl-CoA synthase signature 179 197 1.4E-36 T 16-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 PRINTS PR01798 Succinyl-CoA synthase signature 242 259 1.4E-36 T 16-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 PRINTS PR01798 Succinyl-CoA synthase signature 210 223 1.4E-36 T 16-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 Gene3D G3DSA:3.40.50.261 122 288 1.1E-73 T 16-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 Pfam PF00549 CoA-ligase 153 273 7.3E-19 T 16-09-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 SMART SM00881 4 100 9.1E-38 T 16-09-2016 IPR003781 CoA-binding GO:0048037 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 Gene3D G3DSA:3.40.50.720 2 121 5.0E-56 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 289 2.6E-138 T 16-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 Pfam PF02629 CoA binding domain 6 99 3.9E-31 T 16-09-2016 IPR003781 CoA-binding GO:0048037 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 SUPERFAMILY SSF52210 125 290 3.4E-55 T 16-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 238 251 - T 16-09-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 PIRSF PIRSF001553 1 291 4.0E-130 T 16-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 PANTHER PTHR11117 1 291 4.4E-192 T 16-09-2016 BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 SUPERFAMILY SSF51735 1 124 1.92E-43 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03940 02dea0d3f10901bbfd59c5267d71802c 291 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 154 183 - T 16-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 BER92_RS07730 12a071d39d0b948faf5dad7778f04545 272 Gene3D G3DSA:1.10.530.10 11 136 3.0E-7 T 16-09-2016 BER92_RS07730 12a071d39d0b948faf5dad7778f04545 272 Pfam PF01464 Transglycosylase SLT domain 14 133 6.8E-9 T 16-09-2016 IPR008258 Transglycosylase SLT domain 1 BER92_RS07730 12a071d39d0b948faf5dad7778f04545 272 SUPERFAMILY SSF53955 11 35 1.74E-11 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS07730 12a071d39d0b948faf5dad7778f04545 272 SUPERFAMILY SSF53955 63 137 1.74E-11 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS00280 002769a749077e1d2be1287a34080811 271 TIGRFAM TIGR03138 QueF: queuine synthase 4 271 4.5E-111 T 16-09-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS00280 002769a749077e1d2be1287a34080811 271 PIRSF PIRSF004750 1 271 6.2E-111 T 16-09-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS00280 002769a749077e1d2be1287a34080811 271 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 271 134.844 T 16-09-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS00280 002769a749077e1d2be1287a34080811 271 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 15 123 1.6E-44 T 16-09-2016 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS00280 002769a749077e1d2be1287a34080811 271 PANTHER PTHR34354 1 270 5.7E-87 T 16-09-2016 BER92_RS00280 002769a749077e1d2be1287a34080811 271 Gene3D G3DSA:3.30.1130.10 15 124 4.0E-40 T 16-09-2016 BER92_RS00280 002769a749077e1d2be1287a34080811 271 SUPERFAMILY SSF55620 173 253 1.85E-9 T 16-09-2016 BER92_RS00280 002769a749077e1d2be1287a34080811 271 PANTHER PTHR34354:SF1 1 270 5.7E-87 T 16-09-2016 BER92_RS00280 002769a749077e1d2be1287a34080811 271 Gene3D G3DSA:3.30.1130.10 135 259 1.4E-47 T 16-09-2016 BER92_RS00280 002769a749077e1d2be1287a34080811 271 Pfam PF14489 QueF-like protein 183 256 6.5E-27 T 16-09-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS19600 414ec8ff13b4bbce372190d5bd54539a 91 PANTHER PTHR30558:SF3 4 91 2.1E-26 T 16-09-2016 BER92_RS19600 414ec8ff13b4bbce372190d5bd54539a 91 PANTHER PTHR30558 4 91 2.1E-26 T 16-09-2016 BER92_RS19600 414ec8ff13b4bbce372190d5bd54539a 91 Pfam PF02472 Biopolymer transport protein ExbD/TolR 5 90 6.4E-19 T 16-09-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 BER92_RS12020 9031f573f0f7789521eb173dcd2a9b42 141 Gene3D G3DSA:3.30.370.10 40 130 5.8E-21 T 16-09-2016 IPR000468 Barstar (barnase inhibitor) BER92_RS12020 9031f573f0f7789521eb173dcd2a9b42 141 Pfam PF01337 Barstar (barnase inhibitor) 43 125 2.9E-23 T 16-09-2016 IPR000468 Barstar (barnase inhibitor) BER92_RS12020 9031f573f0f7789521eb173dcd2a9b42 141 SUPERFAMILY SSF52038 40 130 1.23E-22 T 16-09-2016 IPR000468 Barstar (barnase inhibitor) BER92_RS08635 be47d49bc9d62b7af0c1fe90ca532fc9 149 PANTHER PTHR30009 9 134 4.7E-25 T 16-09-2016 BER92_RS08635 be47d49bc9d62b7af0c1fe90ca532fc9 149 Pfam PF03918 Cytochrome C biogenesis protein 17 146 9.5E-42 T 16-09-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family BER92_RS08635 be47d49bc9d62b7af0c1fe90ca532fc9 149 PANTHER PTHR30009:SF7 9 134 4.7E-25 T 16-09-2016 BER92_RS10900 a88479dbd9cbeb66e63ff970b43a304d 272 Pfam PF05598 Transposase domain (DUF772) 59 133 4.4E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS10900 a88479dbd9cbeb66e63ff970b43a304d 272 PANTHER PTHR33803 1 205 1.7E-117 T 16-09-2016 BER92_RS10900 a88479dbd9cbeb66e63ff970b43a304d 272 PANTHER PTHR33803:SF1 1 205 1.7E-117 T 16-09-2016 BER92_RS01810 22de2fd9035d62aa757ed3f34044e63b 347 PIRSF PIRSF000355 3 347 5.6E-112 T 16-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 BER92_RS01810 22de2fd9035d62aa757ed3f34044e63b 347 Gene3D G3DSA:1.10.620.20 17 316 9.9E-80 T 16-09-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 BER92_RS01810 22de2fd9035d62aa757ed3f34044e63b 347 Pfam PF00268 Ribonucleotide reductase, small chain 32 305 6.4E-66 T 16-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 BER92_RS01810 22de2fd9035d62aa757ed3f34044e63b 347 SUPERFAMILY SSF47240 23 347 4.06E-85 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS01810 22de2fd9035d62aa757ed3f34044e63b 347 PANTHER PTHR23409 33 346 4.7E-92 T 16-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 BER92_RS09870 138e787328facae7ded25893b605a14c 202 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 11 174 4.7E-29 T 16-09-2016 IPR017734 Type VI secretion system, lipoprotein SciN BER92_RS09870 138e787328facae7ded25893b605a14c 202 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 19 172 7.8E-29 T 16-09-2016 IPR017734 Type VI secretion system, lipoprotein SciN BER92_RS09870 138e787328facae7ded25893b605a14c 202 PANTHER PTHR37625 2 155 1.4E-17 T 16-09-2016 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 PANTHER PTHR10134 1 202 6.9E-119 T 16-09-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 9 44 1.6E-15 T 16-09-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 Gene3D G3DSA:2.102.10.10 50 203 5.6E-32 T 16-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 PRINTS PR00162 Rieske 2Fe-2S subunit signature 157 169 2.6E-5 T 16-09-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 PRINTS PR00162 Rieske 2Fe-2S subunit signature 126 137 2.6E-5 T 16-09-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 13 198 1.8E-68 T 16-09-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 PANTHER PTHR10134:SF8 1 202 6.9E-119 T 16-09-2016 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 Gene3D G3DSA:1.20.5.510 13 44 1.7E-7 T 16-09-2016 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 SUPERFAMILY SSF50022 34 200 2.46E-38 T 16-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BER92_RS06880 8c6d90dbb58e520a0187991263e6e3ef 214 Pfam PF00355 Rieske [2Fe-2S] domain 115 182 1.6E-9 T 16-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BER92_RS12590 fae0d434cc460edb002693d834088cb8 356 PANTHER PTHR30307 2 351 9.9E-171 T 16-09-2016 BER92_RS12590 fae0d434cc460edb002693d834088cb8 356 SUPERFAMILY SSF111337 2 344 1.57E-128 T 16-09-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12590 fae0d434cc460edb002693d834088cb8 356 Gene3D G3DSA:2.40.10.240 64 139 3.4E-13 T 16-09-2016 BER92_RS12590 fae0d434cc460edb002693d834088cb8 356 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 345 45.468 T 16-09-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12590 fae0d434cc460edb002693d834088cb8 356 Gene3D G3DSA:3.40.1780.10 2 62 8.3E-96 T 16-09-2016 BER92_RS12590 fae0d434cc460edb002693d834088cb8 356 Gene3D G3DSA:3.40.1780.10 177 344 8.3E-96 T 16-09-2016 BER92_RS12590 fae0d434cc460edb002693d834088cb8 356 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 3 344 9.6E-126 T 16-09-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12590 fae0d434cc460edb002693d834088cb8 356 Pfam PF02547 Queuosine biosynthesis protein 4 344 8.7E-127 T 16-09-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 BER92_RS12590 fae0d434cc460edb002693d834088cb8 356 PANTHER PTHR30307:SF0 2 351 9.9E-171 T 16-09-2016 BER92_RS09705 6b9a4e159a9b0784e2c65992b0488c5a 103 PANTHER PTHR11040 25 103 1.2E-17 T 16-09-2016 BER92_RS09705 6b9a4e159a9b0784e2c65992b0488c5a 103 PANTHER PTHR11040:SF56 25 103 1.2E-17 T 16-09-2016 BER92_RS07625 087c9a0a94bdbe0f1ecb327e7c98ad7d 53 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 49 1.7E-9 T 16-09-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BER92_RS00875 051591079fa081ec64ac2d937f5be3da 100 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 9 87 3.4E-15 T 16-09-2016 IPR019289 Bacteriophage tail protein Gp41, putative BER92_RS08955 78297e5f0cd6d1335b19d7717620c102 293 PANTHER PTHR30193:SF6 1 291 2.3E-123 T 16-09-2016 BER92_RS08955 78297e5f0cd6d1335b19d7717620c102 293 SUPERFAMILY SSF161098 54 280 1.83E-64 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS08955 78297e5f0cd6d1335b19d7717620c102 293 PANTHER PTHR30193 1 291 2.3E-123 T 16-09-2016 BER92_RS08955 78297e5f0cd6d1335b19d7717620c102 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 286 5.7E-20 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS08955 78297e5f0cd6d1335b19d7717620c102 293 Gene3D G3DSA:1.10.3720.10 60 291 3.0E-68 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS17545 466020af561be4c871cebedd62af8bc6 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS17545 466020af561be4c871cebedd62af8bc6 455 Pfam PF01609 Transposase DDE domain 284 421 3.9E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS17545 466020af561be4c871cebedd62af8bc6 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS17545 466020af561be4c871cebedd62af8bc6 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS08345 bed4d4a2eaed0cee8a3ac25dcb9d8e48 168 SUPERFAMILY SSF55729 3 156 8.23E-24 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS08345 bed4d4a2eaed0cee8a3ac25dcb9d8e48 168 Gene3D G3DSA:3.40.630.30 1 130 1.4E-18 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS08345 bed4d4a2eaed0cee8a3ac25dcb9d8e48 168 Pfam PF00583 Acetyltransferase (GNAT) family 54 128 2.0E-10 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS08345 bed4d4a2eaed0cee8a3ac25dcb9d8e48 168 PANTHER PTHR23091:SF237 1 131 1.3E-23 T 16-09-2016 BER92_RS08345 bed4d4a2eaed0cee8a3ac25dcb9d8e48 168 PANTHER PTHR23091 1 131 1.3E-23 T 16-09-2016 BER92_RS03085 30f86bfd8e9ad66ce616d480c0d24649 223 Gene3D G3DSA:3.40.50.150 22 201 4.4E-17 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03085 30f86bfd8e9ad66ce616d480c0d24649 223 Pfam PF08242 Methyltransferase domain 53 149 5.8E-15 T 16-09-2016 IPR013217 Methyltransferase type 12 BER92_RS03085 30f86bfd8e9ad66ce616d480c0d24649 223 SUPERFAMILY SSF53335 22 202 1.11E-19 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS00185 65214970ab7f4ce13f2cac5479b27160 196 Pfam PF11304 Protein of unknown function (DUF3106) 49 113 1.6E-10 T 16-09-2016 IPR021455 Protein of unknown function DUF3106 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 SUPERFAMILY SSF111352 73 459 2.48E-123 T 16-09-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 PRINTS PR00342 Rhesus blood group protein signature 274 292 2.2E-6 T 16-09-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 PRINTS PR00342 Rhesus blood group protein signature 178 194 2.2E-6 T 16-09-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 PRINTS PR00342 Rhesus blood group protein signature 305 327 2.2E-6 T 16-09-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 PRINTS PR00342 Rhesus blood group protein signature 360 378 2.2E-6 T 16-09-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 ProSitePatterns PS01219 Ammonium transporters signature. 235 260 - T 16-09-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 Pfam PF00909 Ammonium Transporter Family 79 478 3.9E-118 T 16-09-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 TIGRFAM TIGR00836 amt: ammonium transporter 77 478 5.6E-130 T 16-09-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 Gene3D G3DSA:1.10.3430.10 71 459 3.2E-135 T 16-09-2016 IPR029020 Ammonium/urea transporter BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 PANTHER PTHR11730:SF17 49 479 4.1E-187 T 16-09-2016 BER92_RS18600 9803b50e02128fdf0e91538aa17aa3bd 480 PANTHER PTHR11730 49 479 4.1E-187 T 16-09-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 BER92_RS10115 c8a8a2536c0009ccf4038e9a8150e747 410 PRINTS PR00762 Chloride channel signature 102 121 4.0E-5 T 16-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 BER92_RS10115 c8a8a2536c0009ccf4038e9a8150e747 410 PRINTS PR00762 Chloride channel signature 153 172 4.0E-5 T 16-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 BER92_RS10115 c8a8a2536c0009ccf4038e9a8150e747 410 PANTHER PTHR11689 105 371 7.6E-16 T 16-09-2016 BER92_RS10115 c8a8a2536c0009ccf4038e9a8150e747 410 SUPERFAMILY SSF81340 4 405 6.02E-83 T 16-09-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 BER92_RS10115 c8a8a2536c0009ccf4038e9a8150e747 410 Gene3D G3DSA:1.10.3080.10 13 400 6.3E-51 T 16-09-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 BER92_RS10115 c8a8a2536c0009ccf4038e9a8150e747 410 PANTHER PTHR11689:SF14 105 371 7.6E-16 T 16-09-2016 BER92_RS10115 c8a8a2536c0009ccf4038e9a8150e747 410 Pfam PF00654 Voltage gated chloride channel 62 392 4.7E-64 T 16-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 BER92_RS11595 bc89e9c827f97b6ac1668cead7444da2 239 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 16 226 3.6E-45 T 16-09-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 BER92_RS11595 bc89e9c827f97b6ac1668cead7444da2 239 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 17 229 8.0E-39 T 16-09-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 BER92_RS11595 bc89e9c827f97b6ac1668cead7444da2 239 PANTHER PTHR11054 1 237 4.0E-42 T 16-09-2016 BER92_RS11595 bc89e9c827f97b6ac1668cead7444da2 239 SUPERFAMILY SSF100950 10 230 3.19E-44 T 16-09-2016 BER92_RS11595 bc89e9c827f97b6ac1668cead7444da2 239 Gene3D G3DSA:3.40.50.1360 5 228 2.1E-43 T 16-09-2016 BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 28 277 4.2E-87 T 16-09-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 Pfam PF05175 Methyltransferase small domain 106 197 5.1E-16 T 16-09-2016 IPR007848 Methyltransferase small domain GO:0008168 BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 16 282 8.5E-72 T 16-09-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 PANTHER PTHR18895:SF64 13 281 2.1E-100 T 16-09-2016 BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 SUPERFAMILY SSF53335 22 279 2.2E-55 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 186 192 - T 16-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 PANTHER PTHR18895 13 281 2.1E-100 T 16-09-2016 BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 Gene3D G3DSA:3.40.50.150 92 281 2.1E-67 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 6 281 44.218 T 16-09-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 BER92_RS04890 b453a8eb7ba8470bb9b09e9c78f6111a 286 Gene3D G3DSA:1.10.8.10 15 89 7.3E-23 T 16-09-2016 BER92_RS06650 f3c1ca2ac12f702bf1110b74740427a8 161 PANTHER PTHR39165 1 161 4.1E-53 T 16-09-2016 BER92_RS06650 f3c1ca2ac12f702bf1110b74740427a8 161 Pfam PF04306 Protein of unknown function (DUF456) 23 158 4.9E-41 T 16-09-2016 IPR007403 Protein of unknown function DUF456 BER92_RS06650 f3c1ca2ac12f702bf1110b74740427a8 161 PANTHER PTHR39165:SF1 1 161 4.1E-53 T 16-09-2016 BER92_RS17225 1be83d1cd753946d2af361e6b709b708 83 Pfam PF03692 Putative zinc- or iron-chelating domain 21 57 2.2E-6 T 16-09-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein BER92_RS06350 0fa59f45a1e1eafe9cd39360f8688e6c 148 PIRSF PIRSF004638 1 148 2.9E-41 T 16-09-2016 IPR005265 Uncharacterised protein family UPF0093 BER92_RS06350 0fa59f45a1e1eafe9cd39360f8688e6c 148 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 148 9.8E-40 T 16-09-2016 IPR005265 Uncharacterised protein family UPF0093 BER92_RS06350 0fa59f45a1e1eafe9cd39360f8688e6c 148 PANTHER PTHR40255 2 148 9.0E-57 T 16-09-2016 BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.0E-11 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.0E-11 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.0E-11 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.0E-11 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 PANTHER PTHR24319:SF23 1 243 9.8E-22 T 16-09-2016 BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 PANTHER PTHR24319 1 243 9.8E-22 T 16-09-2016 BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 199 243 2.2E-6 T 16-09-2016 BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 SUPERFAMILY SSF51735 5 243 2.37E-34 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 Pfam PF00106 short chain dehydrogenase 9 145 1.2E-17 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS17675 f9f0b49c172866f58e844cc339b67761 243 Gene3D G3DSA:3.40.50.720 6 243 8.1E-35 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 SUPERFAMILY SSF102886 5 298 4.45E-130 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 Pfam PF01218 Coproporphyrinogen III oxidase 7 298 8.9E-129 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 PANTHER PTHR10755 1 299 1.5E-175 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 Gene3D G3DSA:3.40.1500.10 5 298 4.0E-127 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 PIRSF PIRSF000166 2 299 1.2E-120 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 1 274 56.995 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 164 188 - T 16-09-2016 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 PRINTS PR00073 Coprogen oxidase signature 88 112 1.2E-81 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 PRINTS PR00073 Coprogen oxidase signature 160 189 1.2E-81 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 PRINTS PR00073 Coprogen oxidase signature 29 45 1.2E-81 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 PRINTS PR00073 Coprogen oxidase signature 123 145 1.2E-81 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 PRINTS PR00073 Coprogen oxidase signature 259 285 1.2E-81 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 PRINTS PR00073 Coprogen oxidase signature 231 258 1.2E-81 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS01645 4d7f08e67f118275c109fc62b8b271e2 299 PRINTS PR00073 Coprogen oxidase signature 46 67 1.2E-81 T 16-09-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 BER92_RS17440 f653ff5abe3bbf238439d851a3136211 196 PANTHER PTHR23026 1 192 2.1E-102 T 16-09-2016 BER92_RS17440 f653ff5abe3bbf238439d851a3136211 196 Hamap MF_01204 Probable malonic semialdehyde reductase RutE [rutE]. 2 196 46.84 T 16-09-2016 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE GO:0016491|GO:0055114 BER92_RS17440 f653ff5abe3bbf238439d851a3136211 196 Gene3D G3DSA:3.40.109.10 6 194 2.0E-42 T 16-09-2016 IPR000415 Nitroreductase-like GO:0016491 BER92_RS17440 f653ff5abe3bbf238439d851a3136211 196 PANTHER PTHR23026:SF110 1 192 2.1E-102 T 16-09-2016 BER92_RS17440 f653ff5abe3bbf238439d851a3136211 196 SUPERFAMILY SSF55469 10 195 8.9E-43 T 16-09-2016 IPR000415 Nitroreductase-like GO:0016491 BER92_RS17440 f653ff5abe3bbf238439d851a3136211 196 Pfam PF00881 Nitroreductase family 16 158 4.9E-14 T 16-09-2016 IPR029479 Nitroreductase BER92_RS17325 73bb5f75c84084522481b92391c37680 87 Gene3D G3DSA:1.10.10.60 7 83 1.6E-9 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS17325 73bb5f75c84084522481b92391c37680 87 Pfam PF01527 Transposase 2 70 1.9E-21 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS17325 73bb5f75c84084522481b92391c37680 87 PANTHER PTHR33609 1 87 1.1E-42 T 16-09-2016 BER92_RS17325 73bb5f75c84084522481b92391c37680 87 SUPERFAMILY SSF46689 2 82 5.38E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS04170 5c2f5ef43257e44b41573faa57660b19 120 Pfam PF00072 Response regulator receiver domain 4 116 2.5E-26 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04170 5c2f5ef43257e44b41573faa57660b19 120 PANTHER PTHR26402 2 120 7.7E-40 T 16-09-2016 BER92_RS04170 5c2f5ef43257e44b41573faa57660b19 120 SMART SM00448 2 115 8.0E-34 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS04170 5c2f5ef43257e44b41573faa57660b19 120 Gene3D G3DSA:3.40.50.2300 1 120 2.1E-38 T 16-09-2016 BER92_RS04170 5c2f5ef43257e44b41573faa57660b19 120 SUPERFAMILY SSF52172 1 120 6.97E-36 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS00110 de6a9417ddaab0e3d7f867d3d1945a90 106 PIRSF PIRSF028538 1 106 7.4E-50 T 16-09-2016 IPR014949 Protein of unknown function DUF1820 BER92_RS00110 de6a9417ddaab0e3d7f867d3d1945a90 106 Pfam PF08850 Domain of unknown function (DUF1820) 5 100 2.4E-37 T 16-09-2016 IPR014949 Protein of unknown function DUF1820 BER92_RS16455 09f9c98bdcab552cffbc37e4e8ddd054 272 SUPERFAMILY SSF53098 100 266 1.15E-39 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS16455 09f9c98bdcab552cffbc37e4e8ddd054 272 Pfam PF00665 Integrase core domain 107 221 7.1E-30 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS16455 09f9c98bdcab552cffbc37e4e8ddd054 272 Pfam PF13276 HTH-like domain 26 79 4.5E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS16455 09f9c98bdcab552cffbc37e4e8ddd054 272 PANTHER PTHR32552 1 270 7.1E-84 T 16-09-2016 BER92_RS16455 09f9c98bdcab552cffbc37e4e8ddd054 272 Gene3D G3DSA:3.30.420.10 101 260 1.9E-34 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS02215 df36f56c342849a87cf5072b8fdbff5f 322 PANTHER PTHR35604 2 322 2.7E-238 T 16-09-2016 BER92_RS02215 df36f56c342849a87cf5072b8fdbff5f 322 PANTHER PTHR35604:SF2 2 322 2.7E-238 T 16-09-2016 BER92_RS02215 df36f56c342849a87cf5072b8fdbff5f 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-29 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS02215 df36f56c342849a87cf5072b8fdbff5f 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.4E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS17100 20c538768121e43e26f2c5a02ca9b0ba 531 Pfam PF13520 Amino acid permease 13 423 7.2E-41 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS17100 20c538768121e43e26f2c5a02ca9b0ba 531 PANTHER PTHR11785 2 120 2.6E-152 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS17100 20c538768121e43e26f2c5a02ca9b0ba 531 PIRSF PIRSF006060 1 463 6.5E-72 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS17100 20c538768121e43e26f2c5a02ca9b0ba 531 PANTHER PTHR11785 137 408 2.6E-152 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS17100 20c538768121e43e26f2c5a02ca9b0ba 531 PANTHER PTHR11785 455 512 2.6E-152 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS17100 20c538768121e43e26f2c5a02ca9b0ba 531 PANTHER PTHR11785:SF322 2 120 2.6E-152 T 16-09-2016 BER92_RS17100 20c538768121e43e26f2c5a02ca9b0ba 531 PANTHER PTHR11785:SF322 137 408 2.6E-152 T 16-09-2016 BER92_RS17100 20c538768121e43e26f2c5a02ca9b0ba 531 PANTHER PTHR11785:SF322 455 512 2.6E-152 T 16-09-2016 BER92_RS13310 a8fe6e0622ea2ae2c9d9c522e08c9018 690 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 463 591 3.8E-36 T 16-09-2016 IPR025299 CstA, C-terminal domain BER92_RS13310 a8fe6e0622ea2ae2c9d9c522e08c9018 690 PANTHER PTHR30252:SF3 5 689 0.0 T 16-09-2016 BER92_RS13310 a8fe6e0622ea2ae2c9d9c522e08c9018 690 PANTHER PTHR30252 5 689 0.0 T 16-09-2016 BER92_RS13310 a8fe6e0622ea2ae2c9d9c522e08c9018 690 Pfam PF02554 Carbon starvation protein CstA 31 408 2.4E-164 T 16-09-2016 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 BER92_RS11360 80b053895582dd10d23ca7db19a75fd2 292 SUPERFAMILY SSF55166 153 274 7.06E-25 T 16-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain BER92_RS11360 80b053895582dd10d23ca7db19a75fd2 292 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 209 273 4.0E-15 T 16-09-2016 BER92_RS11360 80b053895582dd10d23ca7db19a75fd2 292 Gene3D G3DSA:3.30.1380.10 163 226 1.8E-4 T 16-09-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain BER92_RS18010 fc82b491c19efa5739c7862837604d57 440 PANTHER PTHR11808:SF12 7 244 1.3E-154 T 16-09-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 BER92_RS18010 fc82b491c19efa5739c7862837604d57 440 PANTHER PTHR11808 280 440 1.3E-154 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS18010 fc82b491c19efa5739c7862837604d57 440 PIRSF PIRSF001434 3 440 2.6E-105 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS18010 fc82b491c19efa5739c7862837604d57 440 SUPERFAMILY SSF53383 11 437 4.08E-93 T 16-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase BER92_RS18010 fc82b491c19efa5739c7862837604d57 440 PANTHER PTHR11808 7 244 1.3E-154 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS18010 fc82b491c19efa5739c7862837604d57 440 Gene3D G3DSA:3.90.1150.10 302 439 7.0E-43 T 16-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 BER92_RS18010 fc82b491c19efa5739c7862837604d57 440 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 437 6.8E-108 T 16-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 BER92_RS18010 fc82b491c19efa5739c7862837604d57 440 Gene3D G3DSA:3.40.640.10 12 301 1.1E-82 T 16-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 BER92_RS18010 fc82b491c19efa5739c7862837604d57 440 PANTHER PTHR11808:SF12 280 440 1.3E-154 T 16-09-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 BER92_RS13875 a09b54f78566eaf3c71222b3860b91d1 160 PANTHER PTHR10430 1 160 4.4E-74 T 16-09-2016 BER92_RS13875 a09b54f78566eaf3c71222b3860b91d1 160 PANTHER PTHR10430:SF16 1 160 4.4E-74 T 16-09-2016 BER92_RS13875 a09b54f78566eaf3c71222b3860b91d1 160 Pfam PF08534 Redoxin 5 155 2.6E-33 T 16-09-2016 IPR013740 Redoxin GO:0016491 BER92_RS13875 a09b54f78566eaf3c71222b3860b91d1 160 SUPERFAMILY SSF52833 1 157 3.32E-32 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS13875 a09b54f78566eaf3c71222b3860b91d1 160 Gene3D G3DSA:3.40.30.10 1 158 1.1E-57 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS16435 2a789c621a468c9d649cf8038172ec36 181 PANTHER PTHR13061:SF11 4 174 6.1E-65 T 16-09-2016 BER92_RS16435 2a789c621a468c9d649cf8038172ec36 181 SUPERFAMILY SSF51161 3 174 2.63E-44 T 16-09-2016 IPR011004 Trimeric LpxA-like BER92_RS16435 2a789c621a468c9d649cf8038172ec36 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 46 1.3E-5 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS16435 2a789c621a468c9d649cf8038172ec36 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 5.5E-4 T 16-09-2016 IPR001451 Hexapeptide repeat BER92_RS16435 2a789c621a468c9d649cf8038172ec36 181 Gene3D G3DSA:2.160.10.10 3 174 2.9E-46 T 16-09-2016 BER92_RS16435 2a789c621a468c9d649cf8038172ec36 181 PANTHER PTHR13061 4 174 6.1E-65 T 16-09-2016 BER92_RS16790 5c84619125cd7cdd7509db1ac4aa5125 215 Gene3D G3DSA:3.40.50.1000 77 213 1.4E-41 T 16-09-2016 IPR023214 HAD-like domain BER92_RS16790 5c84619125cd7cdd7509db1ac4aa5125 215 Gene3D G3DSA:1.10.150.240 17 76 1.3E-20 T 16-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 BER92_RS16790 5c84619125cd7cdd7509db1ac4aa5125 215 PANTHER PTHR18901:SF23 2 215 1.7E-86 T 16-09-2016 BER92_RS16790 5c84619125cd7cdd7509db1ac4aa5125 215 SUPERFAMILY SSF56784 5 214 5.82E-53 T 16-09-2016 IPR023214 HAD-like domain BER92_RS16790 5c84619125cd7cdd7509db1ac4aa5125 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 184 7.2E-34 T 16-09-2016 IPR023214 HAD-like domain BER92_RS16790 5c84619125cd7cdd7509db1ac4aa5125 215 PANTHER PTHR18901 2 215 1.7E-86 T 16-09-2016 BER92_RS15605 d1578945521bda2804f8e67201e95568 295 SUPERFAMILY SSF53448 4 289 4.28E-90 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS15605 d1578945521bda2804f8e67201e95568 295 Gene3D G3DSA:3.90.550.10 4 265 2.1E-64 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS15605 d1578945521bda2804f8e67201e95568 295 PANTHER PTHR22572 5 272 2.6E-163 T 16-09-2016 BER92_RS15605 d1578945521bda2804f8e67201e95568 295 Pfam PF00483 Nucleotidyl transferase 5 241 1.3E-71 T 16-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 BER92_RS15605 d1578945521bda2804f8e67201e95568 295 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 5 289 6.5E-155 T 16-09-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 BER92_RS15605 d1578945521bda2804f8e67201e95568 295 PANTHER PTHR22572:SF105 5 272 2.6E-163 T 16-09-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 BER92_RS13980 e4e0a1753768111f4b74d30ac457f8a2 319 PANTHER PTHR11669:SF8 9 227 3.0E-55 T 16-09-2016 BER92_RS13980 e4e0a1753768111f4b74d30ac457f8a2 319 SUPERFAMILY SSF52540 8 210 2.3E-39 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13980 e4e0a1753768111f4b74d30ac457f8a2 319 PANTHER PTHR11669 9 227 3.0E-55 T 16-09-2016 BER92_RS13980 e4e0a1753768111f4b74d30ac457f8a2 319 Pfam PF13177 DNA polymerase III, delta subunit 9 170 2.0E-32 T 16-09-2016 BER92_RS13980 e4e0a1753768111f4b74d30ac457f8a2 319 Gene3D G3DSA:3.40.50.300 8 170 1.3E-39 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS15635 60f1216969a66a3e3cec2c10da818c06 138 Pfam PF04138 GtrA-like protein 15 129 2.6E-14 T 16-09-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 BER92_RS12745 50d341882713dfc59f80d2799470f544 481 PANTHER PTHR30624:SF4 9 481 3.9E-233 T 16-09-2016 BER92_RS12745 50d341882713dfc59f80d2799470f544 481 Pfam PF01523 Putative modulator of DNA gyrase 40 331 8.0E-71 T 16-09-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS12745 50d341882713dfc59f80d2799470f544 481 SUPERFAMILY SSF111283 23 479 1.96E-137 T 16-09-2016 BER92_RS12745 50d341882713dfc59f80d2799470f544 481 PANTHER PTHR30624 9 481 3.9E-233 T 16-09-2016 BER92_RS12745 50d341882713dfc59f80d2799470f544 481 PIRSF PIRSF004919 21 480 2.6E-143 T 16-09-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- BER92_RS04410 b9621d097f1cb30b87c4b7d71989ab45 276 Gene3D G3DSA:3.90.550.10 6 216 2.2E-7 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS04410 b9621d097f1cb30b87c4b7d71989ab45 276 SUPERFAMILY SSF53448 6 244 3.6E-16 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS04410 b9621d097f1cb30b87c4b7d71989ab45 276 Pfam PF00535 Glycosyl transferase family 2 8 123 3.9E-5 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS09950 aaad51ddf36ea8b9d7b539163870748a 477 PANTHER PTHR32305:SF7 1 444 3.7E-14 T 16-09-2016 BER92_RS09950 aaad51ddf36ea8b9d7b539163870748a 477 SUPERFAMILY SSF69349 110 173 1.8E-5 T 16-09-2016 BER92_RS09950 aaad51ddf36ea8b9d7b539163870748a 477 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 151 254 6.7E-30 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS09950 aaad51ddf36ea8b9d7b539163870748a 477 Gene3D G3DSA:2.40.50.230 20 120 4.3E-27 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS09950 aaad51ddf36ea8b9d7b539163870748a 477 SUPERFAMILY SSF69255 14 120 7.85E-22 T 16-09-2016 BER92_RS09950 aaad51ddf36ea8b9d7b539163870748a 477 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 304 452 1.4E-43 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS09950 aaad51ddf36ea8b9d7b539163870748a 477 PANTHER PTHR32305 1 444 3.7E-14 T 16-09-2016 BER92_RS00855 233346b229a2c823b4e9506d60c6ecbb 187 Pfam PF04717 Type VI secretion system, phage-baseplate injector 7 113 1.0E-38 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS00855 233346b229a2c823b4e9506d60c6ecbb 187 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 5 185 1.9E-59 T 16-09-2016 IPR013046 Phage baseplate assembly protein V/Gp45 BER92_RS18270 b6fd16890cad9ec0223114e0f2f587a5 191 SUPERFAMILY SSF52833 65 188 4.81E-8 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 Gene3D G3DSA:3.40.50.300 50 148 2.3E-11 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 Gene3D G3DSA:3.40.50.300 236 281 2.3E-11 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 SUPERFAMILY SSF52540 62 116 2.85E-16 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 SUPERFAMILY SSF52540 473 487 2.85E-16 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 SUPERFAMILY SSF52540 515 689 2.85E-16 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 SUPERFAMILY SSF52540 219 299 2.85E-16 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 PANTHER PTHR11472 21 710 1.0E-299 T 16-09-2016 BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 PANTHER PTHR11472:SF32 21 710 1.0E-299 T 16-09-2016 BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 Gene3D G3DSA:3.40.50.300 549 690 1.3E-7 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 Pfam PF13307 Helicase C-terminal domain 549 707 6.0E-32 T 16-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BER92_RS18520 2d4f0ee8114bf3485f1b8e0cc66965ac 714 SMART SM00491 563 694 1.9E-30 T 16-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BER92_RS03030 cc8c109b0c4f350798058847883aeac8 365 PANTHER PTHR33803:SF1 1 360 5.0E-244 T 16-09-2016 BER92_RS03030 cc8c109b0c4f350798058847883aeac8 365 PANTHER PTHR33803 1 360 5.0E-244 T 16-09-2016 BER92_RS03030 cc8c109b0c4f350798058847883aeac8 365 Pfam PF05598 Transposase domain (DUF772) 73 147 6.1E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS18025 668e42cb26c7f635a2df4e10a163c18d 199 Pfam PF01810 LysE type translocator 17 197 7.1E-17 T 16-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 BER92_RS18025 668e42cb26c7f635a2df4e10a163c18d 199 PANTHER PTHR30086 1 198 1.0E-26 T 16-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 Pfam PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase 106 529 4.0E-90 T 16-09-2016 IPR005181 Sialate O-acetylesterase domain BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 SUPERFAMILY SSF49785 247 366 2.55E-17 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 Gene3D G3DSA:2.60.120.260 245 359 6.6E-15 T 16-09-2016 IPR008979 Galactose-binding domain-like BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 Pfam PF13364 Beta-galactosidase jelly roll domain 250 356 3.9E-8 T 16-09-2016 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 PANTHER PTHR22901:SF1 5 227 3.6E-231 T 16-09-2016 BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 PANTHER PTHR22901:SF1 368 638 3.6E-231 T 16-09-2016 BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 SUPERFAMILY SSF52266 105 208 7.32E-74 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 SUPERFAMILY SSF52266 403 589 7.32E-74 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 PANTHER PTHR22901 5 227 3.6E-231 T 16-09-2016 BER92_RS10890 d7fd6877c9553ff9a22d83f284f29980 638 PANTHER PTHR22901 368 638 3.6E-231 T 16-09-2016 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 Pfam PF12466 Glutamate dehydrogenase N terminal 1 95 1.2E-43 T 16-09-2016 IPR024727 Bacterial NAD-glutamate dehydrogenase, N-terminal BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 PIRSF PIRSF036761 1 1669 0.0 T 16-09-2016 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 PANTHER PTHR11606 739 1161 0.0 T 16-09-2016 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 PANTHER PTHR11606 233 581 0.0 T 16-09-2016 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 PANTHER PTHR11606 33 173 0.0 T 16-09-2016 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 PANTHER PTHR11606 1186 1431 0.0 T 16-09-2016 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 PANTHER PTHR11606:SF1 33 173 0.0 T 16-09-2016 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 PANTHER PTHR11606:SF1 233 581 0.0 T 16-09-2016 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 PANTHER PTHR11606:SF1 739 1161 0.0 T 16-09-2016 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 SUPERFAMILY SSF51735 1007 1109 1.84E-30 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 SUPERFAMILY SSF51735 1147 1278 1.84E-30 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 SUPERFAMILY SSF53223 817 1003 4.12E-21 T 16-09-2016 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 Gene3D G3DSA:3.40.50.720 1004 1115 1.2E-35 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 Gene3D G3DSA:3.40.50.720 1172 1254 1.2E-35 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 99 1662 0.0 T 16-09-2016 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 BER92_RS07590 5b476c4e1a6f559d7364dcd8c681c25b 1669 PANTHER PTHR11606:SF1 1186 1431 0.0 T 16-09-2016 BER92_RS15625 a3b6e22ca3d2e0627bdd046dfa01769c 232 Gene3D G3DSA:3.40.50.720 16 177 5.4E-13 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS15625 a3b6e22ca3d2e0627bdd046dfa01769c 232 SUPERFAMILY SSF51735 19 199 4.16E-19 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS01385 723928342f89fc7088b641318ce2df6a 177 PANTHER PTHR30529:SF1 1 177 3.7E-80 T 16-09-2016 BER92_RS01385 723928342f89fc7088b641318ce2df6a 177 PANTHER PTHR30529 1 177 3.7E-80 T 16-09-2016 BER92_RS01385 723928342f89fc7088b641318ce2df6a 177 Pfam PF01292 Prokaryotic cytochrome b561 7 175 7.7E-29 T 16-09-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 BER92_RS01385 723928342f89fc7088b641318ce2df6a 177 SUPERFAMILY SSF81342 2 176 8.63E-35 T 16-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 BER92_RS01385 723928342f89fc7088b641318ce2df6a 177 Gene3D G3DSA:1.20.950.20 5 175 5.6E-6 T 16-09-2016 BER92_RS02700 25ab464df580a9fce73530bb43346b81 151 PANTHER PTHR11079 6 148 2.0E-38 T 16-09-2016 BER92_RS02700 25ab464df580a9fce73530bb43346b81 151 Gene3D G3DSA:3.40.140.10 5 137 3.1E-31 T 16-09-2016 BER92_RS02700 25ab464df580a9fce73530bb43346b81 151 SUPERFAMILY SSF53927 7 148 4.02E-35 T 16-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 BER92_RS02700 25ab464df580a9fce73530bb43346b81 151 PANTHER PTHR11079:SF63 6 148 2.0E-38 T 16-09-2016 BER92_RS02700 25ab464df580a9fce73530bb43346b81 151 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 102 9.6E-16 T 16-09-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 BER92_RS03315 9dca1b56f0a876be5ac91c52db6f4399 458 PANTHER PTHR33803:SF1 15 458 0.0 T 16-09-2016 BER92_RS03315 9dca1b56f0a876be5ac91c52db6f4399 458 Pfam PF05598 Transposase domain (DUF772) 62 136 7.5E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS03315 9dca1b56f0a876be5ac91c52db6f4399 458 PANTHER PTHR33803 15 458 0.0 T 16-09-2016 BER92_RS03315 9dca1b56f0a876be5ac91c52db6f4399 458 Pfam PF01609 Transposase DDE domain 287 424 1.5E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS16125 872b4137020fe1b42fa90ca6ae158ab2 82 Pfam PF11730 Protein of unknown function (DUF3297) 6 76 9.7E-37 T 16-09-2016 IPR021724 Protein of unknown function DUF3297 BER92_RS16895 0afefe564ec82cfb3c0ffff5a89e87b6 204 PANTHER PTHR36920:SF1 1 204 1.5E-80 T 16-09-2016 BER92_RS16895 0afefe564ec82cfb3c0ffff5a89e87b6 204 Gene3D G3DSA:2.40.160.20 23 200 8.0E-40 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS16895 0afefe564ec82cfb3c0ffff5a89e87b6 204 SUPERFAMILY SSF56925 24 195 3.14E-17 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS16895 0afefe564ec82cfb3c0ffff5a89e87b6 204 PANTHER PTHR36920 1 204 1.5E-80 T 16-09-2016 BER92_RS16895 0afefe564ec82cfb3c0ffff5a89e87b6 204 Pfam PF03922 OmpW family 46 199 2.0E-30 T 16-09-2016 IPR005618 Outer membrane protein, OmpW GO:0019867 BER92_RS01370 58f1f7093f0ea496ac1d9703e31ba893 455 Pfam PF01609 Transposase DDE domain 284 421 1.3E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01370 58f1f7093f0ea496ac1d9703e31ba893 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS01370 58f1f7093f0ea496ac1d9703e31ba893 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS01370 58f1f7093f0ea496ac1d9703e31ba893 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS06080 5ac798a9f1fae9e047bf8774cee36f50 494 Pfam PF13440 Polysaccharide biosynthesis protein 40 332 3.8E-78 T 16-09-2016 BER92_RS06080 5ac798a9f1fae9e047bf8774cee36f50 494 PANTHER PTHR30250:SF0 7 494 9.1E-109 T 16-09-2016 BER92_RS06080 5ac798a9f1fae9e047bf8774cee36f50 494 PANTHER PTHR30250 7 494 9.1E-109 T 16-09-2016 BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 PRINTS PR00721 Stomatin signature 118 139 1.5E-10 T 16-09-2016 IPR001972 Stomatin family GO:0016020 BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 PRINTS PR00721 Stomatin signature 70 92 1.5E-10 T 16-09-2016 IPR001972 Stomatin family GO:0016020 BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 PRINTS PR00721 Stomatin signature 199 217 1.5E-10 T 16-09-2016 IPR001972 Stomatin family GO:0016020 BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 PRINTS PR00721 Stomatin signature 153 170 1.5E-10 T 16-09-2016 IPR001972 Stomatin family GO:0016020 BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 SMART SM00244 63 223 1.1E-34 T 16-09-2016 IPR001107 Band 7 domain BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 Pfam PF01145 SPFH domain / Band 7 family 68 239 1.1E-31 T 16-09-2016 IPR001107 Band 7 domain BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 TIGRFAM TIGR01933 hflK: HflK protein 65 321 2.9E-99 T 16-09-2016 IPR010201 HflK GO:0016021 BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 PANTHER PTHR10264 7 305 1.1E-127 T 16-09-2016 IPR001972 Stomatin family GO:0016020 BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 PANTHER PTHR10264:SF51 7 305 1.1E-127 T 16-09-2016 IPR010201 HflK GO:0016021 BER92_RS13855 2714c153b01655987b8e48d2879689d5 380 SUPERFAMILY SSF117892 96 230 4.45E-20 T 16-09-2016 IPR001107 Band 7 domain BER92_RS06685 50f0e6e258ebe60c2c0849d5a2d22ade 262 PANTHER PTHR35603 27 222 4.9E-95 T 16-09-2016 BER92_RS06685 50f0e6e258ebe60c2c0849d5a2d22ade 262 Pfam PF05433 Glycine zipper 2TM domain 103 143 2.1E-9 T 16-09-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 BER92_RS06685 50f0e6e258ebe60c2c0849d5a2d22ade 262 PANTHER PTHR35603:SF2 27 222 4.9E-95 T 16-09-2016 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 Gene3D G3DSA:3.40.50.620 254 407 2.7E-86 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 Gene3D G3DSA:3.40.50.620 494 630 2.7E-86 T 16-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 570 1.7E-139 T 16-09-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 PANTHER PTHR11772:SF10 2 405 6.5E-267 T 16-09-2016 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 PANTHER PTHR11772:SF10 482 646 6.5E-267 T 16-09-2016 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 SUPERFAMILY SSF52402 490 630 4.45E-84 T 16-09-2016 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 SUPERFAMILY SSF52402 259 403 4.45E-84 T 16-09-2016 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 PANTHER PTHR11772 2 405 6.5E-267 T 16-09-2016 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 PANTHER PTHR11772 482 646 6.5E-267 T 16-09-2016 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 Gene3D G3DSA:3.60.20.10 1 220 2.3E-68 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 PIRSF PIRSF001589 1 646 4.3E-156 T 16-09-2016 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 Pfam PF00733 Asparagine synthase 263 634 3.6E-106 T 16-09-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 SUPERFAMILY SSF56235 1 220 5.23E-64 T 16-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal BER92_RS06700 bdb3ba55477af00b97ec02918ba48c70 646 Pfam PF13537 Glutamine amidotransferase domain 52 171 2.7E-46 T 16-09-2016 IPR017932 Glutamine amidotransferase type 2 domain BER92_RS00315 e4d2d100dc681321a5d975c027f704b8 455 SMART SM01150 13 410 2.5E-223 T 16-09-2016 IPR009770 Domain of unknown function DUF1338 BER92_RS00315 e4d2d100dc681321a5d975c027f704b8 455 PANTHER PTHR39479 1 453 2.8E-278 T 16-09-2016 BER92_RS00315 e4d2d100dc681321a5d975c027f704b8 455 Pfam PF07063 Domain of unknown function (DUF1338) 11 410 1.3E-119 T 16-09-2016 IPR009770 Domain of unknown function DUF1338 BER92_RS00315 e4d2d100dc681321a5d975c027f704b8 455 PANTHER PTHR39479:SF2 1 453 2.8E-278 T 16-09-2016 BER92_RS04850 e8d36ac33ab65f6d85723be5d82f1ca6 155 Pfam PF00512 His Kinase A (phospho-acceptor) domain 70 121 1.2E-6 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS04850 e8d36ac33ab65f6d85723be5d82f1ca6 155 SUPERFAMILY SSF47384 70 121 2.35E-8 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS04850 e8d36ac33ab65f6d85723be5d82f1ca6 155 Gene3D G3DSA:1.10.287.130 70 118 1.2E-5 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS04925 0e9e9ddbb4acd26a859b2d889e66f6a6 784 Pfam PF07793 Protein of unknown function (DUF1631) 11 775 1.3E-200 T 16-09-2016 IPR012434 Protein of unknown function DUF1631 BER92_RS09770 52e0ca459c12661656e2203f8b5dced7 322 Pfam PF01609 Transposase DDE domain 135 310 5.0E-33 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09770 52e0ca459c12661656e2203f8b5dced7 322 PANTHER PTHR35604 2 322 1.1E-243 T 16-09-2016 BER92_RS09770 52e0ca459c12661656e2203f8b5dced7 322 PANTHER PTHR35604:SF2 2 322 1.1E-243 T 16-09-2016 BER92_RS09770 52e0ca459c12661656e2203f8b5dced7 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS08960 97f175b0d33e4b1e5acc09b7b0858721 278 PANTHER PTHR32243 2 278 2.9E-183 T 16-09-2016 BER92_RS08960 97f175b0d33e4b1e5acc09b7b0858721 278 Gene3D G3DSA:1.10.3720.10 7 265 3.7E-65 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS08960 97f175b0d33e4b1e5acc09b7b0858721 278 PANTHER PTHR32243:SF32 2 278 2.9E-183 T 16-09-2016 BER92_RS08960 97f175b0d33e4b1e5acc09b7b0858721 278 SUPERFAMILY SSF161098 8 278 2.51E-73 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS08960 97f175b0d33e4b1e5acc09b7b0858721 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 266 5.5E-22 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 PANTHER PTHR26402:SF555 11 139 6.6E-47 T 16-09-2016 BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 Gene3D G3DSA:3.40.50.2300 11 131 5.4E-26 T 16-09-2016 BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 PANTHER PTHR26402:SF555 215 225 6.6E-47 T 16-09-2016 BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 SUPERFAMILY SSF47226 108 219 4.45E-9 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 PANTHER PTHR26402 11 139 6.6E-47 T 16-09-2016 BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 PANTHER PTHR26402 215 225 6.6E-47 T 16-09-2016 BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 SUPERFAMILY SSF52172 10 132 1.37E-27 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 Gene3D G3DSA:1.20.120.160 145 216 2.5E-7 T 16-09-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 Pfam PF00072 Response regulator receiver domain 14 123 1.2E-16 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS06990 853b8ba2a1717d17c3f909bd56e2c5e3 240 SMART SM00448 11 122 2.6E-16 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS03895 a6140739912cb87fb7515a864b753f59 418 PANTHER PTHR30012:SF0 20 418 1.8E-165 T 16-09-2016 BER92_RS03895 a6140739912cb87fb7515a864b753f59 418 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 178 206 - T 16-09-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 BER92_RS03895 a6140739912cb87fb7515a864b753f59 418 PRINTS PR00812 Bacterial general secretion pathway protein F signature 178 206 3.2E-17 T 16-09-2016 IPR003004 GspF/PilC family BER92_RS03895 a6140739912cb87fb7515a864b753f59 418 PRINTS PR00812 Bacterial general secretion pathway protein F signature 79 91 3.2E-17 T 16-09-2016 IPR003004 GspF/PilC family BER92_RS03895 a6140739912cb87fb7515a864b753f59 418 PRINTS PR00812 Bacterial general secretion pathway protein F signature 382 396 3.2E-17 T 16-09-2016 IPR003004 GspF/PilC family BER92_RS03895 a6140739912cb87fb7515a864b753f59 418 PRINTS PR00812 Bacterial general secretion pathway protein F signature 398 417 3.2E-17 T 16-09-2016 IPR003004 GspF/PilC family BER92_RS03895 a6140739912cb87fb7515a864b753f59 418 Pfam PF00482 Type II secretion system (T2SS), protein F 287 409 1.6E-29 T 16-09-2016 IPR018076 Type II secretion system F domain BER92_RS03895 a6140739912cb87fb7515a864b753f59 418 Pfam PF00482 Type II secretion system (T2SS), protein F 83 206 2.0E-30 T 16-09-2016 IPR018076 Type II secretion system F domain BER92_RS03895 a6140739912cb87fb7515a864b753f59 418 PANTHER PTHR30012 20 418 1.8E-165 T 16-09-2016 BER92_RS00930 6319973d3984e97855c479d4f4b6dd93 146 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 146 32.805 T 16-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 BER92_RS00930 6319973d3984e97855c479d4f4b6dd93 146 Gene3D G3DSA:3.50.80.10 1 144 1.3E-51 T 16-09-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain BER92_RS00930 6319973d3984e97855c479d4f4b6dd93 146 SUPERFAMILY SSF69500 1 144 3.14E-50 T 16-09-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain BER92_RS00930 6319973d3984e97855c479d4f4b6dd93 146 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 144 3.0E-49 T 16-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 BER92_RS00930 6319973d3984e97855c479d4f4b6dd93 146 PANTHER PTHR10472 3 144 7.2E-63 T 16-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 BER92_RS00930 6319973d3984e97855c479d4f4b6dd93 146 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 4.7E-50 T 16-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 PANTHER PTHR19375:SF182 111 287 2.5E-43 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 Pfam PF06723 MreB/Mbl protein 201 255 7.6E-8 T 16-09-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 PANTHER PTHR19375:SF182 1 47 2.5E-43 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 PANTHER PTHR19375:SF182 332 446 2.5E-43 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 Gene3D G3DSA:3.30.420.40 2 42 2.6E-26 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 Gene3D G3DSA:3.30.420.40 111 241 2.6E-26 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 SUPERFAMILY SSF53067 111 229 9.59E-21 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 SUPERFAMILY SSF53067 2 42 9.59E-21 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 Gene3D G3DSA:3.30.420.40 378 428 1.1E-10 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 Gene3D G3DSA:3.30.420.40 242 265 1.1E-10 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 SUPERFAMILY SSF53067 235 294 6.22E-23 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 SUPERFAMILY SSF53067 332 451 6.22E-23 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 PANTHER PTHR19375 111 287 2.5E-43 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 PANTHER PTHR19375 1 47 2.5E-43 T 16-09-2016 BER92_RS12335 1cea4e7ffeff02ff31c9c80a01afd30a 458 PANTHER PTHR19375 332 446 2.5E-43 T 16-09-2016 BER92_RS03060 a591177756aaebd9a47e046be6fc316c 206 PANTHER PTHR33803 1 199 2.1E-127 T 16-09-2016 BER92_RS03060 a591177756aaebd9a47e046be6fc316c 206 Pfam PF05598 Transposase domain (DUF772) 73 147 2.1E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS03060 a591177756aaebd9a47e046be6fc316c 206 PANTHER PTHR33803:SF1 1 199 2.1E-127 T 16-09-2016 BER92_RS19210 f19278d50d33c1ae29ed12d695f3a10c 177 Pfam PF02470 MlaD protein 41 119 4.7E-20 T 16-09-2016 IPR003399 Mce/MlaD BER92_RS19210 f19278d50d33c1ae29ed12d695f3a10c 177 PANTHER PTHR33371 1 163 1.9E-42 T 16-09-2016 BER92_RS19210 f19278d50d33c1ae29ed12d695f3a10c 177 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 7 150 1.6E-48 T 16-09-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 Pfam PF01578 Cytochrome C assembly protein 99 191 1.4E-12 T 16-09-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 Gene3D G3DSA:3.40.30.10 285 321 6.6E-5 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 Gene3D G3DSA:3.40.30.10 203 281 2.1E-12 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 SUPERFAMILY SSF52833 225 322 7.68E-17 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 123 146 7.6E-20 T 16-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 11 35 7.6E-20 T 16-09-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 169 191 1.2E-26 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 142 159 1.2E-26 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 90 116 1.2E-26 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 PANTHER PTHR30009 6 189 2.8E-68 T 16-09-2016 BER92_RS08640 9bb3df37d382932bb7afa04bb247bae6 327 PANTHER PTHR30009:SF0 6 189 2.8E-68 T 16-09-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS00795 a3c06f3c2482435a029a0a57612df315 155 Pfam PF05926 Phage head completion protein (GPL) 17 155 2.4E-51 T 16-09-2016 IPR009225 Bacteriophage head completion protein GpL GO:0019069 BER92_RS01585 241c0fbd720ac5d32a5d46bfc7e118f9 92 PANTHER PTHR38040:SF1 2 85 3.6E-35 T 16-09-2016 BER92_RS01585 241c0fbd720ac5d32a5d46bfc7e118f9 92 PANTHER PTHR38040 2 85 3.6E-35 T 16-09-2016 BER92_RS01585 241c0fbd720ac5d32a5d46bfc7e118f9 92 Pfam PF04380 Membrane fusogenic activity 2 78 1.4E-26 T 16-09-2016 IPR007475 Membrane fusogenic activity BER92_RS17450 8f2059950d532e89d67614737277aca9 168 Pfam PF02592 Putative vitamin uptake transporter 27 69 2.7E-9 T 16-09-2016 IPR003744 Protein of unknown function DUF165 BER92_RS17450 8f2059950d532e89d67614737277aca9 168 Pfam PF02592 Putative vitamin uptake transporter 70 156 2.6E-18 T 16-09-2016 IPR003744 Protein of unknown function DUF165 BER92_RS17450 8f2059950d532e89d67614737277aca9 168 PANTHER PTHR34300 1 165 1.5E-66 T 16-09-2016 BER92_RS17450 8f2059950d532e89d67614737277aca9 168 PANTHER PTHR34300:SF1 1 165 1.5E-66 T 16-09-2016 BER92_RS17450 8f2059950d532e89d67614737277aca9 168 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 68 137 2.7E-14 T 16-09-2016 IPR003744 Protein of unknown function DUF165 BER92_RS08265 bd4d21adc647a8e6b335c635c201e887 339 Pfam PF12849 PBP superfamily domain 23 307 3.3E-61 T 16-09-2016 IPR024370 PBP domain BER92_RS08265 bd4d21adc647a8e6b335c635c201e887 339 SUPERFAMILY SSF53850 27 335 2.72E-96 T 16-09-2016 BER92_RS08265 bd4d21adc647a8e6b335c635c201e887 339 Gene3D G3DSA:3.40.190.10 179 334 6.9E-31 T 16-09-2016 BER92_RS08265 bd4d21adc647a8e6b335c635c201e887 339 Gene3D G3DSA:3.40.190.10 26 167 2.9E-53 T 16-09-2016 BER92_RS08265 bd4d21adc647a8e6b335c635c201e887 339 PANTHER PTHR30570:SF0 2 333 1.0E-132 T 16-09-2016 BER92_RS08265 bd4d21adc647a8e6b335c635c201e887 339 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 27 334 9.5E-125 T 16-09-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BER92_RS08265 bd4d21adc647a8e6b335c635c201e887 339 PIRSF PIRSF002756 3 337 9.8E-107 T 16-09-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BER92_RS08265 bd4d21adc647a8e6b335c635c201e887 339 PANTHER PTHR30570 2 333 1.0E-132 T 16-09-2016 BER92_RS01495 371a367b52fb6ae302022d5f836169af 197 PANTHER PTHR38593 1 196 1.8E-55 T 16-09-2016 BER92_RS01495 371a367b52fb6ae302022d5f836169af 197 Pfam PF13628 Domain of unknown function (DUF4142) 58 192 3.6E-12 T 16-09-2016 IPR025419 Domain of unknown function DUF4142 BER92_RS01495 371a367b52fb6ae302022d5f836169af 197 PANTHER PTHR38593:SF1 1 196 1.8E-55 T 16-09-2016 BER92_RS07115 370c765dd1e153c54d493f5da5a79365 57 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 7.6E-11 T 16-09-2016 IPR009760 Protein of unknown function DUF1328 GO:0005886 BER92_RS07115 370c765dd1e153c54d493f5da5a79365 57 PIRSF PIRSF036466 1 55 1.4E-21 T 16-09-2016 IPR009760 Protein of unknown function DUF1328 GO:0005886 BER92_RS07115 370c765dd1e153c54d493f5da5a79365 57 PANTHER PTHR37956 2 55 7.0E-19 T 16-09-2016 BER92_RS07115 370c765dd1e153c54d493f5da5a79365 57 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 52 20.443 T 16-09-2016 IPR009760 Protein of unknown function DUF1328 GO:0005886 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 Gene3D G3DSA:2.170.130.10 59 178 8.4E-35 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 Pfam PF00593 TonB dependent receptor 597 930 1.1E-25 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 SUPERFAMILY SSF56935 490 710 2.31E-94 T 16-09-2016 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 SUPERFAMILY SSF56935 326 457 2.31E-94 T 16-09-2016 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 SUPERFAMILY SSF56935 42 240 2.31E-94 T 16-09-2016 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 SUPERFAMILY SSF56935 753 931 2.31E-94 T 16-09-2016 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 Gene3D G3DSA:2.40.170.20 325 459 1.1E-67 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 Gene3D G3DSA:2.40.170.20 492 931 1.1E-67 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 Gene3D G3DSA:2.40.170.20 179 252 1.1E-67 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 PANTHER PTHR30069 1 919 2.1E-153 T 16-09-2016 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 PANTHER PTHR30069:SF7 1 919 2.1E-153 T 16-09-2016 BER92_RS03310 a5d8f83bdf2576aa5d75d5814779828a 931 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 175 1.1E-23 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS04450 ed499ea42cfd69d6e7d3c407c82db060 552 SUPERFAMILY SSF52025 315 374 5.23E-11 T 16-09-2016 BER92_RS04450 ed499ea42cfd69d6e7d3c407c82db060 552 Gene3D G3DSA:3.50.30.30 309 394 7.0E-23 T 16-09-2016 BER92_RS04450 ed499ea42cfd69d6e7d3c407c82db060 552 Pfam PF02225 PA domain 300 391 2.3E-14 T 16-09-2016 IPR003137 PA domain BER92_RS15885 d0e660f8c3ab03c4dc61d7853966c4b1 189 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 32 143 2.8E-39 T 16-09-2016 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS15885 d0e660f8c3ab03c4dc61d7853966c4b1 189 Pfam PF01817 Chorismate mutase type II 37 104 4.9E-7 T 16-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS15885 d0e660f8c3ab03c4dc61d7853966c4b1 189 PIRSF PIRSF026640 5 189 8.5E-63 T 16-09-2016 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS15885 d0e660f8c3ab03c4dc61d7853966c4b1 189 SMART SM00830 29 107 1.1E-11 T 16-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS15885 d0e660f8c3ab03c4dc61d7853966c4b1 189 Gene3D G3DSA:1.20.59.10 37 111 8.7E-9 T 16-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS15885 d0e660f8c3ab03c4dc61d7853966c4b1 189 SUPERFAMILY SSF48600 35 188 8.7E-40 T 16-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 BER92_RS01855 e95d92cabaee82f0d67ded3a90f3a67c 262 PIRSF PIRSF033949 1 262 2.3E-100 T 16-09-2016 IPR012390 Phosphoesterase SP1827 BER92_RS01855 e95d92cabaee82f0d67ded3a90f3a67c 262 Gene3D G3DSA:3.90.1140.10 21 261 2.7E-77 T 16-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase BER92_RS01855 e95d92cabaee82f0d67ded3a90f3a67c 262 Pfam PF08975 Domain of unknown function (DUF1868) 43 158 5.0E-31 T 16-09-2016 IPR015069 Domain of unknown function DUF1868 BER92_RS01855 e95d92cabaee82f0d67ded3a90f3a67c 262 SUPERFAMILY SSF55144 26 259 1.74E-49 T 16-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase BER92_RS08290 6869a6c98044cad68e3d204968ee2efb 522 Pfam PF00916 Sulfate permease family 16 383 1.7E-54 T 16-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BER92_RS08290 6869a6c98044cad68e3d204968ee2efb 522 PANTHER PTHR11814:SF123 15 492 2.7E-207 T 16-09-2016 BER92_RS08290 6869a6c98044cad68e3d204968ee2efb 522 PANTHER PTHR11814 15 492 2.7E-207 T 16-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 BER92_RS09075 a9af1579ad5aa9f74f88042d2c04433d 106 Gene3D G3DSA:1.10.3340.10 5 91 4.2E-42 T 16-09-2016 IPR023163 SMc04008-like domain BER92_RS09075 a9af1579ad5aa9f74f88042d2c04433d 106 Pfam PF06844 Protein of unknown function (DUF1244) 34 99 8.8E-37 T 16-09-2016 IPR023163 SMc04008-like domain BER92_RS09075 a9af1579ad5aa9f74f88042d2c04433d 106 SUPERFAMILY SSF158757 8 84 2.75E-34 T 16-09-2016 IPR023163 SMc04008-like domain BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 Gene3D G3DSA:3.55.50.10 11 78 2.0E-17 T 16-09-2016 BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 Gene3D G3DSA:2.40.50.230 296 395 5.3E-29 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 PANTHER PTHR32305:SF7 13 403 2.9E-27 T 16-09-2016 BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 SUPERFAMILY SSF69279 82 217 1.05E-16 T 16-09-2016 BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 SUPERFAMILY SSF69279 261 277 1.05E-16 T 16-09-2016 BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 Pfam PF05954 Phage late control gene D protein (GPD) 9 216 2.9E-45 T 16-09-2016 BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 589 750 4.6E-34 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 13 469 1.5E-45 T 16-09-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 PANTHER PTHR32305 13 403 2.9E-27 T 16-09-2016 BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 SUPERFAMILY SSF69255 289 395 1.36E-22 T 16-09-2016 BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 SUPERFAMILY SSF69279 9 74 2.95E-15 T 16-09-2016 BER92_RS00715 e05eb810f8dfffa41f1f9ae9ba2118c2 781 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 448 547 1.1E-27 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS17685 37ae6aa17efe933b6d3872656ff9bed0 294 SUPERFAMILY SSF53335 10 219 5.58E-37 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS17685 37ae6aa17efe933b6d3872656ff9bed0 294 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 5 265 30.479 T 16-09-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519|UniPathway: UPA00078 BER92_RS17685 37ae6aa17efe933b6d3872656ff9bed0 294 PANTHER PTHR13090:SF3 5 293 1.7E-127 T 16-09-2016 BER92_RS17685 37ae6aa17efe933b6d3872656ff9bed0 294 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 13 264 1.3E-71 T 16-09-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519|UniPathway: UPA00078 BER92_RS17685 37ae6aa17efe933b6d3872656ff9bed0 294 Pfam PF08241 Methyltransferase domain 51 147 7.7E-20 T 16-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 BER92_RS17685 37ae6aa17efe933b6d3872656ff9bed0 294 PANTHER PTHR13090 5 293 1.7E-127 T 16-09-2016 BER92_RS17685 37ae6aa17efe933b6d3872656ff9bed0 294 Gene3D G3DSA:3.40.50.150 39 266 4.5E-40 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS05170 1a85110b8cde5358ba529fcbeea562fa 201 PANTHER PTHR10746 12 200 1.9E-73 T 16-09-2016 IPR013005 50S ribosomal protein uL4 BER92_RS05170 1a85110b8cde5358ba529fcbeea562fa 201 Gene3D G3DSA:3.40.1370.10 53 201 8.3E-46 T 16-09-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 BER92_RS05170 1a85110b8cde5358ba529fcbeea562fa 201 Pfam PF00573 Ribosomal protein L4/L1 family 12 198 5.4E-54 T 16-09-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 BER92_RS05170 1a85110b8cde5358ba529fcbeea562fa 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 12 198 7.2E-63 T 16-09-2016 IPR013005 50S ribosomal protein uL4 BER92_RS05170 1a85110b8cde5358ba529fcbeea562fa 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 28.998 T 16-09-2016 IPR013005 50S ribosomal protein uL4 BER92_RS05170 1a85110b8cde5358ba529fcbeea562fa 201 SUPERFAMILY SSF52166 10 200 7.85E-61 T 16-09-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 BER92_RS13910 5fdd273c68e503168203b019b8788e80 128 PANTHER PTHR30007 1 122 3.8E-21 T 16-09-2016 BER92_RS13910 5fdd273c68e503168203b019b8788e80 128 PANTHER PTHR30007:SF0 1 122 3.8E-21 T 16-09-2016 BER92_RS13910 5fdd273c68e503168203b019b8788e80 128 Pfam PF01609 Transposase DDE domain 2 118 3.4E-12 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14640 26c89d095e1c15195dbebb4553cdfd1a 191 Pfam PF06693 Protein of unknown function (DUF1190) 28 181 1.3E-31 T 16-09-2016 IPR009576 Biofilm formation YgiB BER92_RS17945 9db56a06a73d27d0634e9769558369c6 217 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 17 217 30.041 T 16-09-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 BER92_RS17945 9db56a06a73d27d0634e9769558369c6 217 PANTHER PTHR11237:SF3 1 217 2.1E-133 T 16-09-2016 BER92_RS17945 9db56a06a73d27d0634e9769558369c6 217 Gene3D G3DSA:1.20.1260.10 64 189 4.3E-10 T 16-09-2016 IPR012347 Ferritin-related BER92_RS17945 9db56a06a73d27d0634e9769558369c6 217 PANTHER PTHR11237 1 217 2.1E-133 T 16-09-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 BER92_RS17945 9db56a06a73d27d0634e9769558369c6 217 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 57 214 4.6E-38 T 16-09-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 BER92_RS17945 9db56a06a73d27d0634e9769558369c6 217 SUPERFAMILY SSF47240 56 191 3.81E-17 T 16-09-2016 IPR009078 Ferritin-like superfamily BER92_RS03725 7c22c61cc37a7ce5c6be982aeb2336f8 83 Pfam PF07362 Post-segregation antitoxin CcdA 11 80 1.2E-19 T 16-09-2016 IPR009956 Post-segregation antitoxin CcdA BER92_RS09265 17b2f28b597bad1035f0bb3e103a20ac 188 Pfam PF03079 ARD/ARD' family 4 164 6.6E-31 T 16-09-2016 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|UniPathway: UPA00904 BER92_RS09265 17b2f28b597bad1035f0bb3e103a20ac 188 PANTHER PTHR23418 9 180 1.5E-39 T 16-09-2016 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|UniPathway: UPA00904 BER92_RS09265 17b2f28b597bad1035f0bb3e103a20ac 188 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 37.764 T 16-09-2016 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.53+1.13.11.54|MetaCyc: PWY-4361|MetaCyc: PWY-5389|UniPathway: UPA00904 BER92_RS09265 17b2f28b597bad1035f0bb3e103a20ac 188 SUPERFAMILY SSF51182 3 179 4.08E-38 T 16-09-2016 IPR011051 RmlC-like cupin domain BER92_RS09265 17b2f28b597bad1035f0bb3e103a20ac 188 Gene3D G3DSA:2.60.120.10 5 180 6.3E-54 T 16-09-2016 IPR014710 RmlC-like jelly roll fold BER92_RS03730 2b3f9e2baf7957d8887a7f88f2516f29 255 Pfam PF05742 Transport and Golgi organisation 2 1 237 8.0E-51 T 16-09-2016 IPR008551 Transport and Golgi organisation protein 2 BER92_RS03730 2b3f9e2baf7957d8887a7f88f2516f29 255 PANTHER PTHR17985 2 239 3.5E-62 T 16-09-2016 IPR008551 Transport and Golgi organisation protein 2 BER92_RS07105 90be8b997eebe89925311e3842c5651e 175 Pfam PF01863 Protein of unknown function DUF45 104 163 1.9E-12 T 16-09-2016 IPR002725 Protein of unknown function DUF45 BER92_RS07105 90be8b997eebe89925311e3842c5651e 175 PANTHER PTHR30399:SF4 1 174 1.2E-96 T 16-09-2016 BER92_RS07105 90be8b997eebe89925311e3842c5651e 175 PANTHER PTHR30399 1 174 1.2E-96 T 16-09-2016 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 PANTHER PTHR32552 624 738 1.3E-50 T 16-09-2016 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 162 7.9E-9 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 PANTHER PTHR32552:SF33 624 738 1.3E-50 T 16-09-2016 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 PANTHER PTHR32552 341 604 1.3E-50 T 16-09-2016 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 PANTHER PTHR32552 9 323 1.3E-50 T 16-09-2016 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 Gene3D G3DSA:2.170.130.10 32 170 1.2E-18 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 PANTHER PTHR32552:SF33 341 604 1.3E-50 T 16-09-2016 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 PANTHER PTHR32552:SF33 9 323 1.3E-50 T 16-09-2016 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 Gene3D G3DSA:2.40.170.20 176 738 1.0E-72 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS13920 18cb87b9c77b725ba52ca4a1bfebcec6 738 SUPERFAMILY SSF56935 35 738 1.1E-91 T 16-09-2016 BER92_RS10690 91c2dc2a72635ef85a9729e73e33a952 351 Pfam PF01180 Dihydroorotate dehydrogenase 48 334 6.7E-89 T 16-09-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 BER92_RS10690 91c2dc2a72635ef85a9729e73e33a952 351 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 2 341 3.0E-124 T 16-09-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS10690 91c2dc2a72635ef85a9729e73e33a952 351 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 1 336 49.62 T 16-09-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 BER92_RS10690 91c2dc2a72635ef85a9729e73e33a952 351 PIRSF PIRSF000164 11 347 3.3E-95 T 16-09-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 BER92_RS10690 91c2dc2a72635ef85a9729e73e33a952 351 PANTHER PTHR11938 5 338 7.0E-99 T 16-09-2016 BER92_RS10690 91c2dc2a72635ef85a9729e73e33a952 351 SUPERFAMILY SSF51395 1 338 7.99E-101 T 16-09-2016 BER92_RS10690 91c2dc2a72635ef85a9729e73e33a952 351 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 79 98 - T 16-09-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 BER92_RS10690 91c2dc2a72635ef85a9729e73e33a952 351 Gene3D G3DSA:3.20.20.70 1 339 7.2E-123 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS10690 91c2dc2a72635ef85a9729e73e33a952 351 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 16-09-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 BER92_RS14305 6ba11f85d698196865e5a68d270eb9c3 44 Gene3D G3DSA:1.10.10.60 2 40 6.6E-4 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS14305 6ba11f85d698196865e5a68d270eb9c3 44 PANTHER PTHR33609 1 44 7.6E-14 T 16-09-2016 BER92_RS18940 54bfe3733261908fdc70c76f13142c22 254 SUPERFAMILY SSF52317 28 206 1.07E-37 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS18940 54bfe3733261908fdc70c76f13142c22 254 Gene3D G3DSA:3.40.50.880 6 226 3.4E-48 T 16-09-2016 IPR029062 Class I glutamine amidotransferase-like BER92_RS18940 54bfe3733261908fdc70c76f13142c22 254 Pfam PF00117 Glutamine amidotransferase class-I 54 193 1.1E-18 T 16-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 BER92_RS18940 54bfe3733261908fdc70c76f13142c22 254 PANTHER PTHR11922 60 189 8.5E-28 T 16-09-2016 BER92_RS11115 30c9b06e277304662bed150bd251dc4d 138 Pfam PF13276 HTH-like domain 32 85 6.7E-10 T 16-09-2016 IPR025948 HTH-like domain BER92_RS11115 30c9b06e277304662bed150bd251dc4d 138 SUPERFAMILY SSF53098 93 137 3.79E-7 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11115 30c9b06e277304662bed150bd251dc4d 138 PANTHER PTHR24559:SF185 14 138 1.2E-63 T 16-09-2016 BER92_RS11115 30c9b06e277304662bed150bd251dc4d 138 Gene3D G3DSA:3.30.420.10 94 138 4.7E-7 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11115 30c9b06e277304662bed150bd251dc4d 138 PANTHER PTHR24559 14 138 1.2E-63 T 16-09-2016 BER92_RS04395 c1154bd4ab5762a604d6d0a1b450eb17 217 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 76 190 3.0E-30 T 16-09-2016 IPR007690 Type II secretion system, protein M GO:0006858 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 SUPERFAMILY SSF56935 722 913 4.4E-83 T 16-09-2016 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 SUPERFAMILY SSF56935 298 432 4.4E-83 T 16-09-2016 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 SUPERFAMILY SSF56935 470 686 4.4E-83 T 16-09-2016 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 SUPERFAMILY SSF56935 33 228 4.4E-83 T 16-09-2016 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 Pfam PF07715 TonB-dependent Receptor Plug Domain 45 163 6.7E-21 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 Gene3D G3DSA:2.40.170.20 166 235 7.3E-64 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 Gene3D G3DSA:2.40.170.20 297 913 7.3E-64 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 Pfam PF00593 TonB dependent receptor 575 912 1.3E-22 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 PANTHER PTHR30069:SF7 5 867 5.1E-116 T 16-09-2016 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 PANTHER PTHR30069 5 867 5.1E-116 T 16-09-2016 BER92_RS01050 4a31b817780be65573b83572131b3dd8 916 Gene3D G3DSA:2.170.130.10 22 165 1.2E-30 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS12685 ae919aa61f91e5c34d9bd302419f59eb 335 Pfam PF05598 Transposase domain (DUF772) 50 122 2.6E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS12685 ae919aa61f91e5c34d9bd302419f59eb 335 PANTHER PTHR35604:SF2 2 324 1.2E-242 T 16-09-2016 BER92_RS12685 ae919aa61f91e5c34d9bd302419f59eb 335 PANTHER PTHR35604 2 324 1.2E-242 T 16-09-2016 BER92_RS12685 ae919aa61f91e5c34d9bd302419f59eb 335 Pfam PF01609 Transposase DDE domain 135 310 5.5E-33 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS05330 f4f2e7201e05d5378aaffe879a68ac5f 447 PANTHER PTHR31589 130 405 6.6E-41 T 16-09-2016 BER92_RS05330 f4f2e7201e05d5378aaffe879a68ac5f 447 PANTHER PTHR31589:SF4 130 405 6.6E-41 T 16-09-2016 BER92_RS05330 f4f2e7201e05d5378aaffe879a68ac5f 447 Pfam PF03080 Domain of unknown function (DUF239) 201 440 1.1E-41 T 16-09-2016 IPR004314 Domain of unknown function DUF239 BER92_RS18705 6cedb9161fe6cdc270412976c9267352 328 PANTHER PTHR30468 19 327 4.5E-79 T 16-09-2016 BER92_RS18705 6cedb9161fe6cdc270412976c9267352 328 PIRSF PIRSF018005 1 327 1.6E-132 T 16-09-2016 IPR017804 Methyltransferase EgtD-like BER92_RS18705 6cedb9161fe6cdc270412976c9267352 328 SUPERFAMILY SSF53335 290 320 9.21E-10 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS18705 6cedb9161fe6cdc270412976c9267352 328 SUPERFAMILY SSF53335 23 233 9.21E-10 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS18705 6cedb9161fe6cdc270412976c9267352 328 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 200 322 1.7E-40 T 16-09-2016 IPR019257 Histidine-specific methyltransferase, SAM-dependent BER92_RS18705 6cedb9161fe6cdc270412976c9267352 328 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 25 324 2.4E-116 T 16-09-2016 IPR017804 Methyltransferase EgtD-like BER92_RS18705 6cedb9161fe6cdc270412976c9267352 328 PANTHER PTHR30468:SF6 19 327 4.5E-79 T 16-09-2016 BER92_RS18705 6cedb9161fe6cdc270412976c9267352 328 Gene3D G3DSA:3.40.50.150 26 233 2.3E-4 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS18705 6cedb9161fe6cdc270412976c9267352 328 Gene3D G3DSA:3.40.50.150 290 317 2.3E-4 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03170 56d9d59cd0ab3e538303317163aa7f7a 397 Gene3D G3DSA:2.40.160.10 17 397 3.7E-89 T 16-09-2016 IPR023614 Porin domain BER92_RS03170 56d9d59cd0ab3e538303317163aa7f7a 397 SUPERFAMILY SSF56935 23 381 1.88E-9 T 16-09-2016 BER92_RS03170 56d9d59cd0ab3e538303317163aa7f7a 397 Pfam PF07396 Phosphate-selective porin O and P 36 397 8.1E-88 T 16-09-2016 IPR010870 Phosphate-selective porin O/P BER92_RS13260 45b1268c17622aaf94feeeb4a23024c3 87 PANTHER PTHR33609 1 87 1.7E-43 T 16-09-2016 BER92_RS13260 45b1268c17622aaf94feeeb4a23024c3 87 Gene3D G3DSA:1.10.10.60 7 83 5.4E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13260 45b1268c17622aaf94feeeb4a23024c3 87 SUPERFAMILY SSF46689 2 82 1.61E-11 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS13260 45b1268c17622aaf94feeeb4a23024c3 87 Pfam PF01527 Transposase 2 70 7.7E-22 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS14020 42f7f7bd9b397b4c036523bd132680a5 64 SUPERFAMILY SSF57829 2 54 5.01E-18 T 16-09-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 BER92_RS14020 42f7f7bd9b397b4c036523bd132680a5 64 Pfam PF01783 Ribosomal L32p protein family 2 54 2.2E-20 T 16-09-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 BER92_RS14020 42f7f7bd9b397b4c036523bd132680a5 64 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.784 T 16-09-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 BER92_RS14020 42f7f7bd9b397b4c036523bd132680a5 64 PANTHER PTHR35534 1 60 4.8E-29 T 16-09-2016 BER92_RS14020 42f7f7bd9b397b4c036523bd132680a5 64 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 1.5E-19 T 16-09-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 92 112 2.3E-5 T 16-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 379 2.3E-5 T 16-09-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 PANTHER PTHR30386 26 399 4.3E-97 T 16-09-2016 BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 SUPERFAMILY SSF111369 190 320 1.31E-11 T 16-09-2016 BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 Pfam PF13533 Biotin-lipoyl like 81 129 1.0E-13 T 16-09-2016 BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 192 323 1.1E-13 T 16-09-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 Gene3D G3DSA:2.40.50.100 245 279 4.3E-20 T 16-09-2016 BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 Gene3D G3DSA:2.40.50.100 81 114 4.3E-20 T 16-09-2016 BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 SUPERFAMILY SSF111369 80 167 1.01E-11 T 16-09-2016 BER92_RS07530 2516ffbadfda9cece2a3cd9d2f1c0af4 400 PANTHER PTHR30386:SF0 26 399 4.3E-97 T 16-09-2016 BER92_RS11740 42418f5a1049d39c7e655a544e8e13dd 155 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 36 90 1.6E-12 T 16-09-2016 IPR022687 DTXR-type HTH domain GO:0003677 BER92_RS11740 42418f5a1049d39c7e655a544e8e13dd 155 PANTHER PTHR33238 30 148 3.0E-27 T 16-09-2016 BER92_RS11740 42418f5a1049d39c7e655a544e8e13dd 155 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 93 149 2.2E-13 T 16-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 BER92_RS11740 42418f5a1049d39c7e655a544e8e13dd 155 Gene3D G3DSA:1.10.10.10 34 100 2.3E-28 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS11740 42418f5a1049d39c7e655a544e8e13dd 155 SMART SM00529 54 152 9.0E-32 T 16-09-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 BER92_RS11740 42418f5a1049d39c7e655a544e8e13dd 155 PANTHER PTHR33238:SF1 30 148 3.0E-27 T 16-09-2016 BER92_RS11740 42418f5a1049d39c7e655a544e8e13dd 155 SUPERFAMILY SSF46785 46 121 1.39E-14 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS11740 42418f5a1049d39c7e655a544e8e13dd 155 Gene3D G3DSA:1.10.60.10 105 148 6.2E-19 T 16-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 BER92_RS00755 03f8f8356a734a91ff4d927103d39682 357 Pfam PF13614 AAA domain 4 205 5.0E-21 T 16-09-2016 IPR025669 AAA domain BER92_RS00755 03f8f8356a734a91ff4d927103d39682 357 SUPERFAMILY SSF52540 5 211 9.5E-21 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00755 03f8f8356a734a91ff4d927103d39682 357 Gene3D G3DSA:3.40.50.300 5 205 8.4E-25 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS00755 03f8f8356a734a91ff4d927103d39682 357 PANTHER PTHR13696:SF52 97 208 2.9E-13 T 16-09-2016 BER92_RS00755 03f8f8356a734a91ff4d927103d39682 357 PANTHER PTHR13696:SF52 5 69 2.9E-13 T 16-09-2016 BER92_RS00755 03f8f8356a734a91ff4d927103d39682 357 PANTHER PTHR13696 97 208 2.9E-13 T 16-09-2016 BER92_RS00755 03f8f8356a734a91ff4d927103d39682 357 PANTHER PTHR13696 5 69 2.9E-13 T 16-09-2016 BER92_RS02445 2de6af9f9f084c60e387033f0c5b7cdd 269 PANTHER PTHR35891:SF2 65 269 5.2E-74 T 16-09-2016 BER92_RS02445 2de6af9f9f084c60e387033f0c5b7cdd 269 Pfam PF01323 DSBA-like thioredoxin domain 150 254 8.7E-10 T 16-09-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 BER92_RS02445 2de6af9f9f084c60e387033f0c5b7cdd 269 PANTHER PTHR35891 65 269 5.2E-74 T 16-09-2016 BER92_RS02445 2de6af9f9f084c60e387033f0c5b7cdd 269 Gene3D G3DSA:3.40.30.10 79 261 1.6E-50 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS02445 2de6af9f9f084c60e387033f0c5b7cdd 269 SUPERFAMILY SSF52833 79 258 1.26E-36 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS01935 da3a60bc407ffd120aa196922eadff83 90 SUPERFAMILY SSF46689 1 89 5.02E-22 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS01935 da3a60bc407ffd120aa196922eadff83 90 PANTHER PTHR33215 1 89 8.0E-24 T 16-09-2016 BER92_RS01935 da3a60bc407ffd120aa196922eadff83 90 Gene3D G3DSA:1.10.10.60 7 86 4.4E-20 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS01935 da3a60bc407ffd120aa196922eadff83 90 Pfam PF01527 Transposase 4 70 7.5E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS01935 da3a60bc407ffd120aa196922eadff83 90 PANTHER PTHR33215:SF1 1 89 8.0E-24 T 16-09-2016 BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 Pfam PF00902 Sec-independent protein translocase protein (TatC) 15 225 4.5E-64 T 16-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 PANTHER PTHR30371 8 245 8.9E-95 T 16-09-2016 BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 9 244 18.192 T 16-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 ProSitePatterns PS01218 TatC family signature. 158 177 - T 16-09-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 89 107 1.5E-44 T 16-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 12 39 1.5E-44 T 16-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 107 133 1.5E-44 T 16-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 158 186 1.5E-44 T 16-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 PANTHER PTHR30371:SF0 8 245 8.9E-95 T 16-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BER92_RS18950 a60190dcfef7ce9e6221f97e36ae3ac3 245 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 13 230 1.3E-66 T 16-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BER92_RS14055 71fe42a967d2ef83fca3fe751a5a2db6 318 PANTHER PTHR34351:SF1 12 318 4.3E-74 T 16-09-2016 BER92_RS14055 71fe42a967d2ef83fca3fe751a5a2db6 318 PANTHER PTHR34351 12 318 4.3E-74 T 16-09-2016 BER92_RS14055 71fe42a967d2ef83fca3fe751a5a2db6 318 Pfam PF01882 Protein of unknown function DUF58 211 288 1.7E-14 T 16-09-2016 IPR002881 Domain of unknown function DUF58 BER92_RS01435 670920602ac00a81c30c884ce0e1cc8c 272 SUPERFAMILY SSF58113 10 151 6.41E-6 T 16-09-2016 BER92_RS01310 43e196f0dd7640df0f14aa93b3347a90 530 PANTHER PTHR33803:SF1 1 349 1.3E-238 T 16-09-2016 BER92_RS01310 43e196f0dd7640df0f14aa93b3347a90 530 Pfam PF05598 Transposase domain (DUF772) 44 118 1.1E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS01310 43e196f0dd7640df0f14aa93b3347a90 530 PANTHER PTHR33803 1 349 1.3E-238 T 16-09-2016 BER92_RS04280 d8bbb697c45d57f8ca761db69f31d5e3 88 Gene3D G3DSA:1.10.10.60 14 79 7.7E-14 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS04280 d8bbb697c45d57f8ca761db69f31d5e3 88 SUPERFAMILY SSF46689 8 79 3.4E-15 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS04280 d8bbb697c45d57f8ca761db69f31d5e3 88 Pfam PF01527 Transposase 11 77 2.4E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS04280 d8bbb697c45d57f8ca761db69f31d5e3 88 PANTHER PTHR33215:SF1 7 79 1.9E-15 T 16-09-2016 BER92_RS04280 d8bbb697c45d57f8ca761db69f31d5e3 88 PANTHER PTHR33215 7 79 1.9E-15 T 16-09-2016 BER92_RS04865 83aef7445839225923283dea45c37078 322 Pfam PF00923 Transaldolase 17 316 1.5E-89 T 16-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 BER92_RS04865 83aef7445839225923283dea45c37078 322 ProSitePatterns PS00958 Transaldolase active site. 133 150 - T 16-09-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 BER92_RS04865 83aef7445839225923283dea45c37078 322 PANTHER PTHR10683 6 322 4.8E-130 T 16-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 BER92_RS04865 83aef7445839225923283dea45c37078 322 SUPERFAMILY SSF51569 6 320 1.26E-94 T 16-09-2016 BER92_RS04865 83aef7445839225923283dea45c37078 322 Gene3D G3DSA:3.20.20.70 6 319 2.9E-107 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS04865 83aef7445839225923283dea45c37078 322 PANTHER PTHR10683:SF18 6 322 4.8E-130 T 16-09-2016 BER92_RS04865 83aef7445839225923283dea45c37078 322 Hamap MF_00492 Transaldolase [tal]. 5 320 47.28 T 16-09-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 BER92_RS04865 83aef7445839225923283dea45c37078 322 ProSitePatterns PS01054 Transaldolase signature 1. 34 42 - T 16-09-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 BER92_RS06970 0194c2abdb241afa12ebdbaed5970f84 125 Pfam PF16137 Domain of unknown function (DUF4845) 29 113 3.4E-27 T 16-09-2016 IPR032314 Protein of unknown function DUF4845 BER92_RS17445 417733193ca273f257826128c001fa1b 315 PANTHER PTHR33986:SF1 51 313 7.7E-122 T 16-09-2016 BER92_RS17445 417733193ca273f257826128c001fa1b 315 PANTHER PTHR33986 51 313 7.7E-122 T 16-09-2016 BER92_RS17445 417733193ca273f257826128c001fa1b 315 Pfam PF06258 Mitochondrial fission ELM1 12 313 2.0E-81 T 16-09-2016 IPR009367 Mitochondrial fission protein ELM1-like BER92_RS14790 0ce250f43730109cc3bcda46776f87ad 565 SMART SM00228 463 530 0.0012 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS14790 0ce250f43730109cc3bcda46776f87ad 565 Gene3D G3DSA:2.30.42.10 475 537 1.5E-6 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS14790 0ce250f43730109cc3bcda46776f87ad 565 Pfam PF05299 M61 glycyl aminopeptidase 242 359 3.4E-34 T 16-09-2016 IPR007963 Peptidase M61, catalytic domain BER92_RS14790 0ce250f43730109cc3bcda46776f87ad 565 PIRSF PIRSF016493 1 565 7.7E-138 T 16-09-2016 IPR024191 Peptidase M61 BER92_RS14790 0ce250f43730109cc3bcda46776f87ad 565 SUPERFAMILY SSF50156 444 531 2.21E-8 T 16-09-2016 IPR001478 PDZ domain GO:0005515 BER92_RS14790 0ce250f43730109cc3bcda46776f87ad 565 Pfam PF07720 Tetratricopeptide repeat 177 211 1.1E-8 T 16-09-2016 IPR011716 Tetratricopeptide TPR-3 BER92_RS07010 552e0d67e9c287fdc0909719ee26f4c4 525 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 21 237 3.4E-70 T 16-09-2016 IPR007357 Deoxyribodipyrimidine photolyase-related protein BER92_RS07010 552e0d67e9c287fdc0909719ee26f4c4 525 PANTHER PTHR38657:SF1 9 525 7.9E-236 T 16-09-2016 BER92_RS07010 552e0d67e9c287fdc0909719ee26f4c4 525 Gene3D G3DSA:1.25.40.80 243 335 5.9E-12 T 16-09-2016 BER92_RS07010 552e0d67e9c287fdc0909719ee26f4c4 525 SUPERFAMILY SSF48173 246 503 8.24E-56 T 16-09-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain BER92_RS07010 552e0d67e9c287fdc0909719ee26f4c4 525 PANTHER PTHR38657 9 525 7.9E-236 T 16-09-2016 BER92_RS11525 c838de0e5d8c5b010e144d2d99bc9c12 354 Gene3D G3DSA:3.40.50.720 2 261 3.4E-19 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS11525 c838de0e5d8c5b010e144d2d99bc9c12 354 PANTHER PTHR32487:SF0 5 354 6.8E-135 T 16-09-2016 BER92_RS11525 c838de0e5d8c5b010e144d2d99bc9c12 354 PANTHER PTHR32487 5 354 6.8E-135 T 16-09-2016 BER92_RS11525 c838de0e5d8c5b010e144d2d99bc9c12 354 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 208 2.0E-9 T 16-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 BER92_RS11525 c838de0e5d8c5b010e144d2d99bc9c12 354 SUPERFAMILY SSF51735 320 333 3.0E-28 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS11525 c838de0e5d8c5b010e144d2d99bc9c12 354 SUPERFAMILY SSF51735 4 279 3.0E-28 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS12615 0ed80d5fbcb687ca5c365a6105424270 210 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 41.739 T 16-09-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 BER92_RS12615 0ed80d5fbcb687ca5c365a6105424270 210 SUPERFAMILY SSF53271 4 206 8.65E-62 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS12615 0ed80d5fbcb687ca5c365a6105424270 210 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 2.8E-62 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS12615 0ed80d5fbcb687ca5c365a6105424270 210 PANTHER PTHR10285 1 197 7.3E-87 T 16-09-2016 BER92_RS12615 0ed80d5fbcb687ca5c365a6105424270 210 Gene3D G3DSA:3.40.50.2020 3 207 4.2E-70 T 16-09-2016 IPR029057 Phosphoribosyltransferase-like BER92_RS12615 0ed80d5fbcb687ca5c365a6105424270 210 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 207 1.5E-79 T 16-09-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 BER92_RS00725 1af7fd7f564dea60eda2855a27f0b00d 254 Pfam PF13503 Domain of unknown function (DUF4123) 40 102 8.5E-9 T 16-09-2016 IPR025391 Domain of unknown function DUF4123 BER92_RS15115 b370b6080e89272ef90157fbb3ea27bd 253 PANTHER PTHR30502 4 252 3.8E-65 T 16-09-2016 BER92_RS15115 b370b6080e89272ef90157fbb3ea27bd 253 PANTHER PTHR30502:SF0 4 252 3.8E-65 T 16-09-2016 BER92_RS15115 b370b6080e89272ef90157fbb3ea27bd 253 SUPERFAMILY SSF51621 5 241 1.22E-57 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS15115 b370b6080e89272ef90157fbb3ea27bd 253 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 199 1.7E-25 T 16-09-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 BER92_RS15115 b370b6080e89272ef90157fbb3ea27bd 253 Gene3D G3DSA:3.20.20.60 4 241 2.6E-55 T 16-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 BER92_RS06380 54e4fe60afd3add83ed46447a73f7002 153 SUPERFAMILY SSF54637 12 151 1.96E-44 T 16-09-2016 IPR029069 HotDog domain BER92_RS06380 54e4fe60afd3add83ed46447a73f7002 153 Pfam PF07977 FabA-like domain 19 144 4.3E-39 T 16-09-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 BER92_RS06380 54e4fe60afd3add83ed46447a73f7002 153 PANTHER PTHR30272 1 153 1.0E-72 T 16-09-2016 BER92_RS06380 54e4fe60afd3add83ed46447a73f7002 153 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 10 149 9.4E-60 T 16-09-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 BER92_RS06380 54e4fe60afd3add83ed46447a73f7002 153 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 10 152 33.73 T 16-09-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 BER92_RS06380 54e4fe60afd3add83ed46447a73f7002 153 Gene3D G3DSA:3.10.129.10 9 150 2.3E-53 T 16-09-2016 IPR029069 HotDog domain BER92_RS06900 80faa3f5c84b3a67f68434f1ca514ad4 146 PIRSF PIRSF005276 5 146 1.1E-53 T 16-09-2016 IPR007481 Stringent starvation protein B BER92_RS06900 80faa3f5c84b3a67f68434f1ca514ad4 146 SUPERFAMILY SSF101738 6 119 3.66E-45 T 16-09-2016 IPR007481 Stringent starvation protein B BER92_RS06900 80faa3f5c84b3a67f68434f1ca514ad4 146 PANTHER PTHR37486 4 146 1.9E-76 T 16-09-2016 BER92_RS06900 80faa3f5c84b3a67f68434f1ca514ad4 146 Pfam PF04386 Stringent starvation protein B 11 146 3.1E-34 T 16-09-2016 IPR007481 Stringent starvation protein B BER92_RS06900 80faa3f5c84b3a67f68434f1ca514ad4 146 PANTHER PTHR37486:SF1 4 146 1.9E-76 T 16-09-2016 BER92_RS06900 80faa3f5c84b3a67f68434f1ca514ad4 146 Gene3D G3DSA:2.30.30.220 7 109 1.8E-44 T 16-09-2016 IPR007481 Stringent starvation protein B BER92_RS06705 4e747fb7dbbb8d93f40bdae75ffa1cdc 184 PANTHER PTHR30543:SF6 1 184 3.6E-64 T 16-09-2016 BER92_RS06705 4e747fb7dbbb8d93f40bdae75ffa1cdc 184 Gene3D G3DSA:3.40.50.360 1 183 1.5E-49 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS06705 4e747fb7dbbb8d93f40bdae75ffa1cdc 184 PANTHER PTHR30543 1 184 3.6E-64 T 16-09-2016 BER92_RS06705 4e747fb7dbbb8d93f40bdae75ffa1cdc 184 SUPERFAMILY SSF52218 5 175 9.08E-47 T 16-09-2016 IPR029039 Flavoprotein-like domain BER92_RS06705 4e747fb7dbbb8d93f40bdae75ffa1cdc 184 Pfam PF03358 NADPH-dependent FMN reductase 5 149 6.2E-37 T 16-09-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BER92_RS01270 a604db6a4559c736469fac260c7c71ae 288 Pfam PF05036 Sporulation related domain 179 248 3.6E-7 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS01270 a604db6a4559c736469fac260c7c71ae 288 SUPERFAMILY SSF110997 181 248 3.01E-7 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS05440 91ae91b9835fb08fad151dafdc86823c 438 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 25 242 3.0E-90 T 16-09-2016 IPR022391 Integrating conjugative element relaxase, PFGI-1 class BER92_RS05440 91ae91b9835fb08fad151dafdc86823c 438 Pfam PF07514 Putative helicase 26 339 9.7E-125 T 16-09-2016 IPR011119 Uncharacterised domain, helicase/relaxase, putative BER92_RS17055 8b8de0d0d703ccb0ba6c3c5852fc9b0e 128 PANTHER PTHR30007 1 122 1.0E-21 T 16-09-2016 BER92_RS17055 8b8de0d0d703ccb0ba6c3c5852fc9b0e 128 PANTHER PTHR30007:SF0 1 122 1.0E-21 T 16-09-2016 BER92_RS17055 8b8de0d0d703ccb0ba6c3c5852fc9b0e 128 Pfam PF01609 Transposase DDE domain 2 118 7.7E-12 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09440 87c5fc99921f459fbb6f7988bee6494d 82 SMART SM00966 3 46 3.4E-11 T 16-09-2016 IPR007159 SpoVT-AbrB domain GO:0003677 BER92_RS09440 87c5fc99921f459fbb6f7988bee6494d 82 PANTHER PTHR34860:SF1 1 82 3.4E-25 T 16-09-2016 BER92_RS09440 87c5fc99921f459fbb6f7988bee6494d 82 Gene3D G3DSA:2.10.260.10 2 42 6.3E-14 T 16-09-2016 BER92_RS09440 87c5fc99921f459fbb6f7988bee6494d 82 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 6 43 5.5E-11 T 16-09-2016 IPR007159 SpoVT-AbrB domain GO:0003677 BER92_RS09440 87c5fc99921f459fbb6f7988bee6494d 82 PANTHER PTHR34860 1 82 3.4E-25 T 16-09-2016 BER92_RS09440 87c5fc99921f459fbb6f7988bee6494d 82 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 3 42 1.2E-12 T 16-09-2016 IPR007159 SpoVT-AbrB domain GO:0003677 BER92_RS09440 87c5fc99921f459fbb6f7988bee6494d 82 SUPERFAMILY SSF89447 2 42 5.76E-11 T 16-09-2016 BER92_RS06595 2d6a3aa9ca97d6134fd7f57694067d1c 281 Gene3D G3DSA:3.30.565.40 86 162 1.6E-7 T 16-09-2016 IPR025303 Domain of unknown function DUF4163 BER92_RS09985 5a2c96e1ac01a62a7e273b49b154be39 85 PANTHER PTHR36569:SF2 10 68 6.5E-23 T 16-09-2016 BER92_RS09985 5a2c96e1ac01a62a7e273b49b154be39 85 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 40 59 6.0E-6 T 16-09-2016 IPR019626 Stress-induced protein, KGG, repeat BER92_RS09985 5a2c96e1ac01a62a7e273b49b154be39 85 PANTHER PTHR36569 10 68 6.5E-23 T 16-09-2016 BER92_RS09905 e1fb779eea5f1c3ea49eb216de5b54a5 359 Pfam PF15602 Immunity protein 71 11 167 3.0E-46 T 16-09-2016 IPR028950 Immunity protein 71 BER92_RS09905 e1fb779eea5f1c3ea49eb216de5b54a5 359 Pfam PF15584 Immunity protein 72 196 289 3.8E-16 T 16-09-2016 IPR028966 Immunity protein 72 BER92_RS16775 651fba241c648ee22af33c2e8008de4f 178 PANTHER PTHR11106 2 171 1.2E-82 T 16-09-2016 BER92_RS16775 651fba241c648ee22af33c2e8008de4f 178 SMART SM00506 2 137 1.7E-50 T 16-09-2016 IPR002589 Macro domain BER92_RS16775 651fba241c648ee22af33c2e8008de4f 178 Pfam PF01661 Macro domain 19 137 4.8E-43 T 16-09-2016 IPR002589 Macro domain BER92_RS16775 651fba241c648ee22af33c2e8008de4f 178 SUPERFAMILY SSF52949 1 171 1.04E-60 T 16-09-2016 BER92_RS16775 651fba241c648ee22af33c2e8008de4f 178 Gene3D G3DSA:3.40.220.10 2 175 1.9E-67 T 16-09-2016 BER92_RS19035 34aadfc8c24069f2f96b47e5af138e47 367 PIRSF PIRSF035009 1 367 4.4E-152 T 16-09-2016 IPR017035 Uncharacterised conserved protein UCP035009, HsdR, All3000-type BER92_RS19035 34aadfc8c24069f2f96b47e5af138e47 367 PANTHER PTHR41907 1 367 2.9E-95 T 16-09-2016 BER92_RS19035 34aadfc8c24069f2f96b47e5af138e47 367 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 24 124 7.3E-12 T 16-09-2016 IPR029464 Type I restriction enzyme R protein, N-terminal domain BER92_RS18430 f9e7d6f93da4e7e1d9152e5f7a3a6dbd 291 SUPERFAMILY SSF110997 214 289 5.75E-15 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS18430 f9e7d6f93da4e7e1d9152e5f7a3a6dbd 291 Gene3D G3DSA:3.30.70.1070 212 290 4.6E-19 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS18430 f9e7d6f93da4e7e1d9152e5f7a3a6dbd 291 Pfam PF05036 Sporulation related domain 215 288 2.3E-14 T 16-09-2016 IPR007730 Sporulation-related domain GO:0042834 BER92_RS12155 c214dd6683037f21ab4585b7401a7d45 258 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 58 239 2.5E-32 T 16-09-2016 IPR003744 Protein of unknown function DUF165 BER92_RS12155 c214dd6683037f21ab4585b7401a7d45 258 PANTHER PTHR34300 16 258 2.0E-86 T 16-09-2016 BER92_RS12155 c214dd6683037f21ab4585b7401a7d45 258 PANTHER PTHR34300:SF2 16 258 2.0E-86 T 16-09-2016 BER92_RS12155 c214dd6683037f21ab4585b7401a7d45 258 Pfam PF02592 Putative vitamin uptake transporter 62 234 2.3E-41 T 16-09-2016 IPR003744 Protein of unknown function DUF165 BER92_RS14110 43d8c1d9a61acc62f88d95377dfb49ac 165 Pfam PF01967 MoaC family 21 157 4.6E-48 T 16-09-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 BER92_RS14110 43d8c1d9a61acc62f88d95377dfb49ac 165 Gene3D G3DSA:3.30.70.640 10 160 1.7E-56 T 16-09-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 BER92_RS14110 43d8c1d9a61acc62f88d95377dfb49ac 165 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 10 159 5.1E-51 T 16-09-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 BER92_RS14110 43d8c1d9a61acc62f88d95377dfb49ac 165 SUPERFAMILY SSF55040 18 160 7.72E-48 T 16-09-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 BER92_RS14110 43d8c1d9a61acc62f88d95377dfb49ac 165 PANTHER PTHR22960 10 164 5.6E-70 T 16-09-2016 BER92_RS13370 5ae7dfc5a254ad3720d99e04d02b5390 266 PANTHER PTHR22946:SF4 1 265 7.5E-141 T 16-09-2016 BER92_RS13370 5ae7dfc5a254ad3720d99e04d02b5390 266 PANTHER PTHR22946 1 265 7.5E-141 T 16-09-2016 BER92_RS13370 5ae7dfc5a254ad3720d99e04d02b5390 266 Pfam PF01738 Dienelactone hydrolase family 42 262 1.5E-36 T 16-09-2016 IPR002925 Dienelactone hydrolase GO:0016787 BER92_RS13370 5ae7dfc5a254ad3720d99e04d02b5390 266 Gene3D G3DSA:3.40.50.1820 27 262 3.2E-43 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS13370 5ae7dfc5a254ad3720d99e04d02b5390 266 SUPERFAMILY SSF53474 30 263 1.24E-35 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS02400 ff4ceb4b4ab5b7840d1c4c66087e3c68 243 PANTHER PTHR30607 1 225 1.3E-108 T 16-09-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BER92_RS02400 ff4ceb4b4ab5b7840d1c4c66087e3c68 243 Pfam PF03814 Potassium-transporting ATPase A subunit 1 219 9.3E-84 T 16-09-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BER92_RS01475 d44c6f536610bdcaaa09170b36b8edc2 67 Pfam PF13586 Transposase DDE domain 5 57 3.6E-16 T 16-09-2016 IPR025668 Transposase DDE domain BER92_RS01475 d44c6f536610bdcaaa09170b36b8edc2 67 PANTHER PTHR30007:SF17 1 57 2.7E-23 T 16-09-2016 BER92_RS01475 d44c6f536610bdcaaa09170b36b8edc2 67 PANTHER PTHR30007 1 57 2.7E-23 T 16-09-2016 BER92_RS18365 54cc003370c716ec8e72c0df62af8cdf 265 PANTHER PTHR13696:SF52 1 262 5.4E-89 T 16-09-2016 BER92_RS18365 54cc003370c716ec8e72c0df62af8cdf 265 Pfam PF13614 AAA domain 3 177 4.1E-63 T 16-09-2016 IPR025669 AAA domain BER92_RS18365 54cc003370c716ec8e72c0df62af8cdf 265 SUPERFAMILY SSF52540 1 253 4.35E-64 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18365 54cc003370c716ec8e72c0df62af8cdf 265 PANTHER PTHR13696 1 262 5.4E-89 T 16-09-2016 BER92_RS18365 54cc003370c716ec8e72c0df62af8cdf 265 Gene3D G3DSA:3.40.50.300 3 253 3.3E-68 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 243 2.7E-51 T 16-09-2016 BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 Gene3D G3DSA:3.40.50.720 4 245 6.5E-69 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 245 6.4E-99 T 16-09-2016 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|UniPathway: UPA00917 BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 189 0.0027 T 16-09-2016 BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PANTHER PTHR24322 153 185 1.1E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PANTHER PTHR24322 8 137 1.1E-41 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.4E-12 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.4E-12 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.4E-12 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 6.2E-36 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 6.2E-36 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 6.2E-36 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 6.2E-36 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 6.2E-36 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 6.2E-36 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PANTHER PTHR24322:SF328 153 185 1.1E-41 T 16-09-2016 BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 PANTHER PTHR24322:SF328 8 137 1.1E-41 T 16-09-2016 BER92_RS03160 dc44e134f95ae2ce0f1e7ccf23e03172 246 SUPERFAMILY SSF51735 4 245 7.69E-66 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS16285 25b7d9217c1fe4df88f3adb8e40ebc1e 125 Pfam PF01381 Helix-turn-helix 9 55 6.9E-9 T 16-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BER92_RS16285 25b7d9217c1fe4df88f3adb8e40ebc1e 125 PANTHER PTHR10245 7 70 4.8E-27 T 16-09-2016 BER92_RS16285 25b7d9217c1fe4df88f3adb8e40ebc1e 125 PANTHER PTHR10245:SF31 7 70 4.8E-27 T 16-09-2016 BER92_RS16285 25b7d9217c1fe4df88f3adb8e40ebc1e 125 Gene3D G3DSA:1.10.260.40 4 66 7.3E-16 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS16285 25b7d9217c1fe4df88f3adb8e40ebc1e 125 SMART SM00530 7 63 2.2E-8 T 16-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BER92_RS16285 25b7d9217c1fe4df88f3adb8e40ebc1e 125 SUPERFAMILY SSF47413 4 66 9.21E-12 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS08990 54378f796c439878f8fe2df9eeec28d0 294 Gene3D G3DSA:3.60.110.10 8 290 7.0E-100 T 16-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 BER92_RS08990 54378f796c439878f8fe2df9eeec28d0 294 SUPERFAMILY SSF56317 6 291 2.22E-86 T 16-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 BER92_RS08990 54378f796c439878f8fe2df9eeec28d0 294 PANTHER PTHR23088 8 291 5.2E-140 T 16-09-2016 BER92_RS08990 54378f796c439878f8fe2df9eeec28d0 294 Pfam PF00795 Carbon-nitrogen hydrolase 8 271 2.7E-54 T 16-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 BER92_RS08990 54378f796c439878f8fe2df9eeec28d0 294 PANTHER PTHR23088:SF11 8 291 5.2E-140 T 16-09-2016 BER92_RS08225 40a6dcb3c26a4bf650ece7baceb18d41 76 Pfam PF00990 Diguanylate cyclase, GGDEF domain 2 72 2.4E-5 T 16-09-2016 IPR000160 GGDEF domain BER92_RS08225 40a6dcb3c26a4bf650ece7baceb18d41 76 SUPERFAMILY SSF55073 1 75 3.69E-8 T 16-09-2016 IPR029787 Nucleotide cyclase BER92_RS08225 40a6dcb3c26a4bf650ece7baceb18d41 76 Gene3D G3DSA:3.30.70.270 1 75 5.7E-9 T 16-09-2016 BER92_RS14955 ddc7f892925f62ce7a8c832bae467f08 59 Gene3D G3DSA:1.10.1220.10 7 48 9.9E-6 T 16-09-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BER92_RS14955 ddc7f892925f62ce7a8c832bae467f08 59 SUPERFAMILY SSF47598 3 56 3.78E-10 T 16-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 BER92_RS09150 db3dbd6f8210afa064e65f4c52338d40 91 Gene3D G3DSA:1.10.10.60 14 89 2.3E-18 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS09150 db3dbd6f8210afa064e65f4c52338d40 91 PANTHER PTHR33215:SF1 7 88 3.3E-21 T 16-09-2016 BER92_RS09150 db3dbd6f8210afa064e65f4c52338d40 91 PANTHER PTHR33215 7 88 3.3E-21 T 16-09-2016 BER92_RS09150 db3dbd6f8210afa064e65f4c52338d40 91 Pfam PF01527 Transposase 11 77 2.9E-16 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS09150 db3dbd6f8210afa064e65f4c52338d40 91 SUPERFAMILY SSF46689 8 89 1.02E-18 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 Gene3D G3DSA:2.40.170.20 322 781 3.1E-86 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 Gene3D G3DSA:2.40.170.20 184 277 3.1E-86 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 PANTHER PTHR32552 12 332 8.8E-35 T 16-09-2016 BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 PANTHER PTHR32552 378 781 8.8E-35 T 16-09-2016 BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 Gene3D G3DSA:2.170.130.10 68 183 8.5E-13 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 SUPERFAMILY SSF56935 327 781 7.02E-90 T 16-09-2016 BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 SUPERFAMILY SSF56935 48 290 7.02E-90 T 16-09-2016 BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 764 781 - T 16-09-2016 IPR010917 TonB-dependent receptor, conserved site BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 Pfam PF00593 TonB dependent receptor 518 779 1.8E-27 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS02290 a908901b8a5c675712b132f576dcade1 781 Pfam PF07715 TonB-dependent Receptor Plug Domain 68 169 1.2E-10 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS04525 76056f5f9aaba8a5ded81fd923dee97c 181 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 181 1.1E-54 T 16-09-2016 IPR018636 Protein of unknown function DUF2058 BER92_RS04270 cfbb70cb97997775ac3cba2da1a1d058 565 Pfam PF14414 A nuclease of the HNH/ENDO VII superfamily with conserved WHH 523 563 6.7E-18 T 16-09-2016 IPR032869 WHH domain-containing protein BER92_RS04270 cfbb70cb97997775ac3cba2da1a1d058 565 Pfam PF13665 Domain of unknown function (DUF4150) 106 202 7.2E-8 T 16-09-2016 IPR025425 Domain of unknown function DUF4150 BER92_RS07240 759f939eac35bacb0b154d6f5f4f1483 118 PANTHER PTHR11058 1 118 5.4E-78 T 16-09-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 BER92_RS07240 759f939eac35bacb0b154d6f5f4f1483 118 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 1 118 18.831 T 16-09-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 BER92_RS07240 759f939eac35bacb0b154d6f5f4f1483 118 PANTHER PTHR11058:SF10 1 118 5.4E-78 T 16-09-2016 BER92_RS07240 759f939eac35bacb0b154d6f5f4f1483 118 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 21 117 9.2E-36 T 16-09-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 BER92_RS14795 6cd49351a7d117568398e834b1174ffb 111 PANTHER PTHR36835 3 111 7.2E-40 T 16-09-2016 BER92_RS14795 6cd49351a7d117568398e834b1174ffb 111 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 17 110 4.6E-37 T 16-09-2016 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 BER92_RS14795 6cd49351a7d117568398e834b1174ffb 111 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 22 95 1.2E-15 T 16-09-2016 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 BER92_RS11415 714f8cb33bd6d02446790cd7827fe423 541 SUPERFAMILY SSF48452 259 373 4.93E-6 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS05755 cab7cd3f78b663d152e960dee88313e2 515 Pfam PF13419 Haloacid dehalogenase-like hydrolase 328 386 8.7E-9 T 16-09-2016 IPR023214 HAD-like domain BER92_RS05755 cab7cd3f78b663d152e960dee88313e2 515 SUPERFAMILY SSF56784 188 282 1.96E-13 T 16-09-2016 IPR023214 HAD-like domain BER92_RS05755 cab7cd3f78b663d152e960dee88313e2 515 SUPERFAMILY SSF56784 436 471 1.96E-13 T 16-09-2016 IPR023214 HAD-like domain BER92_RS05755 cab7cd3f78b663d152e960dee88313e2 515 SUPERFAMILY SSF56784 326 383 1.96E-13 T 16-09-2016 IPR023214 HAD-like domain BER92_RS05755 cab7cd3f78b663d152e960dee88313e2 515 Gene3D G3DSA:3.40.50.1000 329 381 6.2E-15 T 16-09-2016 IPR023214 HAD-like domain BER92_RS05755 cab7cd3f78b663d152e960dee88313e2 515 Gene3D G3DSA:3.40.50.1000 188 201 6.2E-15 T 16-09-2016 IPR023214 HAD-like domain BER92_RS05755 cab7cd3f78b663d152e960dee88313e2 515 Gene3D G3DSA:3.40.50.1000 434 475 6.2E-15 T 16-09-2016 IPR023214 HAD-like domain BER92_RS14105 8d7041ada5f0f69c5a18c9d44d49e0c3 81 SUPERFAMILY SSF54285 5 81 7.29E-17 T 16-09-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BER92_RS14105 8d7041ada5f0f69c5a18c9d44d49e0c3 81 Pfam PF02597 ThiS family 7 81 8.4E-17 T 16-09-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 BER92_RS14105 8d7041ada5f0f69c5a18c9d44d49e0c3 81 Gene3D G3DSA:3.10.20.30 4 81 8.9E-19 T 16-09-2016 IPR012675 Beta-grasp domain BER92_RS14105 8d7041ada5f0f69c5a18c9d44d49e0c3 81 PANTHER PTHR33359 1 81 1.5E-22 T 16-09-2016 BER92_RS18160 7a22982a6e3b4b290479527698d46815 65 Pfam PF14255 Cysteine-rich CPXCG 10 59 7.7E-22 T 16-09-2016 IPR025990 Cysteine-rich CPXCG protein BER92_RS18160 7a22982a6e3b4b290479527698d46815 65 PIRSF PIRSF037225 1 65 1.3E-28 T 16-09-2016 IPR017143 Uncharacterised conserved protein UCP037225 BER92_RS10385 b181553656443e0523d3fb28fba5a9e6 151 PANTHER PTHR38786 1 145 7.2E-41 T 16-09-2016 BER92_RS10385 b181553656443e0523d3fb28fba5a9e6 151 Pfam PF02050 Flagellar FliJ protein 19 137 3.5E-23 T 16-09-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 BER92_RS10385 b181553656443e0523d3fb28fba5a9e6 151 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 138 6.2E-26 T 16-09-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 BER92_RS13220 2e018620b57e433d8130acd3d89c6687 272 Pfam PF00112 Papain family cysteine protease 69 257 4.4E-15 T 16-09-2016 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 BER92_RS13220 2e018620b57e433d8130acd3d89c6687 272 SMART SM00645 55 269 4.4E-6 T 16-09-2016 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 BER92_RS13220 2e018620b57e433d8130acd3d89c6687 272 Gene3D G3DSA:3.90.70.10 49 265 1.6E-30 T 16-09-2016 BER92_RS13220 2e018620b57e433d8130acd3d89c6687 272 SUPERFAMILY SSF54001 49 260 4.91E-34 T 16-09-2016 BER92_RS02795 374d052ad89dff36d612c36396d50708 92 Gene3D G3DSA:3.30.70.1460 10 92 1.2E-14 T 16-09-2016 IPR027471 YbeD-like domain BER92_RS02795 374d052ad89dff36d612c36396d50708 92 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 4 92 18.858 T 16-09-2016 IPR007454 Uncharacterised protein family UPF0250 BER92_RS02795 374d052ad89dff36d612c36396d50708 92 Pfam PF04359 Protein of unknown function (DUF493) 11 92 3.1E-20 T 16-09-2016 IPR007454 Uncharacterised protein family UPF0250 BER92_RS02795 374d052ad89dff36d612c36396d50708 92 SUPERFAMILY SSF117991 7 92 2.22E-18 T 16-09-2016 IPR027471 YbeD-like domain BER92_RS13845 34c8983a7b8665e3c265fa75bfab6271 61 PANTHER PTHR38602:SF1 1 61 2.9E-15 T 16-09-2016 BER92_RS13845 34c8983a7b8665e3c265fa75bfab6271 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 4 58 1.8E-19 T 16-09-2016 IPR019201 Protein of unknown function DUF2065 BER92_RS13845 34c8983a7b8665e3c265fa75bfab6271 61 PANTHER PTHR38602 1 61 2.9E-15 T 16-09-2016 BER92_RS07805 f19155671e4edfa96dde48c89b8bcb1b 273 Pfam PF01471 Putative peptidoglycan binding domain 58 119 9.7E-18 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS07805 f19155671e4edfa96dde48c89b8bcb1b 273 Gene3D G3DSA:1.10.101.10 49 125 3.5E-22 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS07805 f19155671e4edfa96dde48c89b8bcb1b 273 SUPERFAMILY SSF47090 52 125 9.42E-19 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS15450 a48754c371f0f9be97297001911618f6 195 SUPERFAMILY SSF116734 6 194 3.27E-21 T 16-09-2016 BER92_RS07735 e6e590070de89b0f467d14b21b773258 135 Pfam PF04956 TrbC/VIRB2 family 14 109 4.1E-12 T 16-09-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 BER92_RS03460 2bc3d59526bbf17da927ef94011b63c7 89 Pfam PF12889 Protein of unknown function (DUF3829) 3 88 2.0E-7 T 16-09-2016 IPR024291 Protein of unknown function DUF3829 BER92_RS14485 db7300c0981f86fb6f40e078defb9675 219 PANTHER PTHR37946:SF1 1 219 1.9E-46 T 16-09-2016 BER92_RS14485 db7300c0981f86fb6f40e078defb9675 219 Gene3D G3DSA:3.40.50.1820 21 216 5.3E-17 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS14485 db7300c0981f86fb6f40e078defb9675 219 PANTHER PTHR37946 1 219 1.9E-46 T 16-09-2016 BER92_RS14485 db7300c0981f86fb6f40e078defb9675 219 SUPERFAMILY SSF53474 20 200 1.09E-16 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS04255 9baca515b50ae7692d70bb05f635349b 196 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 25 182 1.8E-35 T 16-09-2016 IPR018683 Domain of unknown function DUF2169 BER92_RS12115 c6b50880f0e437359cf81fba4625c69b 567 SMART SM00646 379 534 6.2E-64 T 16-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 BER92_RS12115 c6b50880f0e437359cf81fba4625c69b 567 Pfam PF11741 AMIN domain 39 113 4.1E-13 T 16-09-2016 IPR021731 AMIN domain BER92_RS12115 c6b50880f0e437359cf81fba4625c69b 567 PANTHER PTHR30404 294 565 7.2E-98 T 16-09-2016 BER92_RS12115 c6b50880f0e437359cf81fba4625c69b 567 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 319 534 4.4E-48 T 16-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 BER92_RS12115 c6b50880f0e437359cf81fba4625c69b 567 PANTHER PTHR30404:SF0 294 565 7.2E-98 T 16-09-2016 BER92_RS12115 c6b50880f0e437359cf81fba4625c69b 567 SUPERFAMILY SSF53187 461 537 2.07E-52 T 16-09-2016 BER92_RS12115 c6b50880f0e437359cf81fba4625c69b 567 SUPERFAMILY SSF53187 317 413 2.07E-52 T 16-09-2016 BER92_RS12115 c6b50880f0e437359cf81fba4625c69b 567 Gene3D G3DSA:3.40.630.40 462 537 3.3E-57 T 16-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 BER92_RS12115 c6b50880f0e437359cf81fba4625c69b 567 Gene3D G3DSA:3.40.630.40 318 414 3.3E-57 T 16-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 BER92_RS14030 6e6b52caf10bf9b6af5cc8c1e2b332f3 191 PANTHER PTHR11746:SF102 123 190 1.4E-24 T 16-09-2016 BER92_RS14030 6e6b52caf10bf9b6af5cc8c1e2b332f3 191 Pfam PF02545 Maf-like protein 4 185 3.2E-41 T 16-09-2016 IPR003697 Maf-like protein GO:0005737 BER92_RS14030 6e6b52caf10bf9b6af5cc8c1e2b332f3 191 SUPERFAMILY SSF52972 1 185 7.85E-53 T 16-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like BER92_RS14030 6e6b52caf10bf9b6af5cc8c1e2b332f3 191 PANTHER PTHR11746 123 190 1.4E-24 T 16-09-2016 BER92_RS14030 6e6b52caf10bf9b6af5cc8c1e2b332f3 191 Gene3D G3DSA:3.90.950.10 2 189 1.0E-52 T 16-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like BER92_RS14030 6e6b52caf10bf9b6af5cc8c1e2b332f3 191 Hamap MF_00528 Septum formation protein Maf [maf]. 4 190 27.663 T 16-09-2016 IPR003697 Maf-like protein GO:0005737 BER92_RS14030 6e6b52caf10bf9b6af5cc8c1e2b332f3 191 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 1.0E-43 T 16-09-2016 IPR003697 Maf-like protein GO:0005737 BER92_RS14030 6e6b52caf10bf9b6af5cc8c1e2b332f3 191 PIRSF PIRSF006305 1 190 2.2E-40 T 16-09-2016 IPR003697 Maf-like protein GO:0005737 BER92_RS03870 0a86e4d8a67cbfbd72f4d957ac10c6af 476 Pfam PF05598 Transposase domain (DUF772) 73 147 3.2E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS03870 0a86e4d8a67cbfbd72f4d957ac10c6af 476 Pfam PF01609 Transposase DDE domain 298 442 4.6E-9 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03870 0a86e4d8a67cbfbd72f4d957ac10c6af 476 PANTHER PTHR33803:SF1 1 476 0.0 T 16-09-2016 BER92_RS03870 0a86e4d8a67cbfbd72f4d957ac10c6af 476 PANTHER PTHR33803 1 476 0.0 T 16-09-2016 BER92_RS12680 c4fd00c13410c587c1254f3ae078816d 422 Pfam PF13372 Alginate export 120 419 3.5E-21 T 16-09-2016 IPR025388 Alginate export domain UniPathway: UPA00286 BER92_RS16840 6347894cb00d14288f407c6a22fb5378 311 Pfam PF13182 Protein of unknown function (DUF4007) 12 309 8.0E-79 T 16-09-2016 IPR025248 Domain of unknown function DUF4007 BER92_RS03960 7dfabd34015d95176575c3b64f5c3e28 270 PANTHER PTHR30616:SF3 104 270 2.5E-125 T 16-09-2016 BER92_RS03960 7dfabd34015d95176575c3b64f5c3e28 270 PANTHER PTHR30616:SF3 7 88 2.5E-125 T 16-09-2016 BER92_RS03960 7dfabd34015d95176575c3b64f5c3e28 270 SUPERFAMILY SSF64438 6 268 1.17E-71 T 16-09-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic BER92_RS03960 7dfabd34015d95176575c3b64f5c3e28 270 Gene3D G3DSA:3.60.140.10 6 268 4.3E-87 T 16-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase BER92_RS03960 7dfabd34015d95176575c3b64f5c3e28 270 PANTHER PTHR30616 7 88 2.5E-125 T 16-09-2016 BER92_RS03960 7dfabd34015d95176575c3b64f5c3e28 270 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 33 268 1.4E-50 T 16-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase BER92_RS03960 7dfabd34015d95176575c3b64f5c3e28 270 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 26 267 2.8E-66 T 16-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase BER92_RS03960 7dfabd34015d95176575c3b64f5c3e28 270 PANTHER PTHR30616 104 270 2.5E-125 T 16-09-2016 BER92_RS19150 e95de62ef9358cfe9f309b69ceb7fd36 370 PRINTS PR01217 Proline rich extensin signature 171 192 2.4E-10 T 16-09-2016 BER92_RS19150 e95de62ef9358cfe9f309b69ceb7fd36 370 PRINTS PR01217 Proline rich extensin signature 125 141 2.4E-10 T 16-09-2016 BER92_RS19150 e95de62ef9358cfe9f309b69ceb7fd36 370 PRINTS PR01217 Proline rich extensin signature 208 225 2.4E-10 T 16-09-2016 BER92_RS19150 e95de62ef9358cfe9f309b69ceb7fd36 370 PRINTS PR01217 Proline rich extensin signature 153 165 2.4E-10 T 16-09-2016 BER92_RS19150 e95de62ef9358cfe9f309b69ceb7fd36 370 PANTHER PTHR33755:SF1 1 370 4.9E-225 T 16-09-2016 BER92_RS19150 e95de62ef9358cfe9f309b69ceb7fd36 370 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 6 86 4.3E-11 T 16-09-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BER92_RS19150 e95de62ef9358cfe9f309b69ceb7fd36 370 PANTHER PTHR33755 1 370 4.9E-225 T 16-09-2016 BER92_RS04630 68754165bacea0e416e13c31fd5fb370 217 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 39 199 3.9E-20 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS04630 68754165bacea0e416e13c31fd5fb370 217 PANTHER PTHR30383 1 217 7.5E-44 T 16-09-2016 BER92_RS04630 68754165bacea0e416e13c31fd5fb370 217 SUPERFAMILY SSF52266 37 215 1.68E-46 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS04630 68754165bacea0e416e13c31fd5fb370 217 Gene3D G3DSA:3.40.50.1110 37 215 2.7E-48 T 16-09-2016 IPR013830 SGNH hydrolase-type esterase domain BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 PANTHER PTHR30557 19 97 0.0 T 16-09-2016 BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 PANTHER PTHR30557 131 161 0.0 T 16-09-2016 BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 PANTHER PTHR30557 189 622 0.0 T 16-09-2016 BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 138 592 56.197 T 16-09-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 Pfam PF01964 Radical SAM ThiC family 139 586 1.8E-199 T 16-09-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 138 590 3.5E-215 T 16-09-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 Pfam PF13667 ThiC-associated domain 22 98 9.6E-29 T 16-09-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 PANTHER PTHR30557:SF1 19 97 0.0 T 16-09-2016 BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 PANTHER PTHR30557:SF1 131 161 0.0 T 16-09-2016 BER92_RS03360 e1e92c9dcd776aec0876b73eedc26f6d 625 PANTHER PTHR30557:SF1 189 622 0.0 T 16-09-2016 BER92_RS18120 59864c1633f2dc3f77ff47ca587a8257 168 PIRSF PIRSF019239 8 168 4.4E-39 T 16-09-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 BER92_RS18120 59864c1633f2dc3f77ff47ca587a8257 168 PANTHER PTHR34584:SF1 10 168 6.2E-36 T 16-09-2016 BER92_RS18120 59864c1633f2dc3f77ff47ca587a8257 168 Pfam PF01899 Na+/H+ ion antiporter subunit 19 166 6.0E-42 T 16-09-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 BER92_RS18120 59864c1633f2dc3f77ff47ca587a8257 168 PANTHER PTHR34584 10 168 6.2E-36 T 16-09-2016 BER92_RS12565 66e0361d56857fe1264d5e35ae130232 425 PANTHER PTHR37944 36 425 3.0E-168 T 16-09-2016 BER92_RS12565 66e0361d56857fe1264d5e35ae130232 425 Pfam PF04966 Carbohydrate-selective porin, OprB family 56 424 1.6E-87 T 16-09-2016 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 BER92_RS12565 66e0361d56857fe1264d5e35ae130232 425 PANTHER PTHR37944:SF1 36 425 3.0E-168 T 16-09-2016 BER92_RS01080 95a1b477e579d14a9d6803c4344a7005 194 Pfam PF13671 AAA domain 17 149 1.9E-13 T 16-09-2016 BER92_RS01080 95a1b477e579d14a9d6803c4344a7005 194 PANTHER PTHR11603 1 179 3.4E-69 T 16-09-2016 BER92_RS01080 95a1b477e579d14a9d6803c4344a7005 194 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 17 173 4.4E-44 T 16-09-2016 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530|UniPathway: UPA00792 BER92_RS01080 95a1b477e579d14a9d6803c4344a7005 194 Gene3D G3DSA:3.40.50.300 12 176 2.4E-56 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01080 95a1b477e579d14a9d6803c4344a7005 194 SUPERFAMILY SSF52540 13 174 2.4E-28 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS13860 0ab2cd797bbae4696b3d340ec860cd75 128 SUPERFAMILY SSF52172 1 121 3.56E-38 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS13860 0ab2cd797bbae4696b3d340ec860cd75 128 SMART SM00448 2 115 5.8E-39 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS13860 0ab2cd797bbae4696b3d340ec860cd75 128 PANTHER PTHR26402 2 119 7.8E-41 T 16-09-2016 BER92_RS13860 0ab2cd797bbae4696b3d340ec860cd75 128 Gene3D G3DSA:3.40.50.2300 1 123 4.4E-39 T 16-09-2016 BER92_RS13860 0ab2cd797bbae4696b3d340ec860cd75 128 Pfam PF00072 Response regulator receiver domain 4 115 2.8E-27 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS11715 681a61026f02ac44f5dd1afd5b27c3c3 273 PANTHER PTHR31756 1 273 2.0E-109 T 16-09-2016 BER92_RS11715 681a61026f02ac44f5dd1afd5b27c3c3 273 Pfam PF03618 Kinase/pyrophosphorylase 7 263 6.0E-71 T 16-09-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 BER92_RS11715 681a61026f02ac44f5dd1afd5b27c3c3 273 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 4 272 70.737 T 16-09-2016 IPR026530 Phosphoenolpyruvate synthase regulatory protein BER92_RS11715 681a61026f02ac44f5dd1afd5b27c3c3 273 PANTHER PTHR31756:SF3 1 273 2.0E-109 T 16-09-2016 BER92_RS17195 da38930e0a8b07531c7d06d8f1c2f6e6 383 SUPERFAMILY SSF51445 6 352 2.2E-49 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS17195 da38930e0a8b07531c7d06d8f1c2f6e6 383 Gene3D G3DSA:3.20.20.80 37 367 6.3E-25 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS07375 ad06dcb80b070f6b335294e627542651 167 SMART SM01001 8 159 6.5E-98 T 16-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 BER92_RS07375 ad06dcb80b070f6b335294e627542651 167 PANTHER PTHR23046:SF2 8 167 7.2E-83 T 16-09-2016 BER92_RS07375 ad06dcb80b070f6b335294e627542651 167 PIRSF PIRSF001338 5 167 7.4E-66 T 16-09-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 BER92_RS07375 ad06dcb80b070f6b335294e627542651 167 SUPERFAMILY SSF52255 9 165 4.71E-64 T 16-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 BER92_RS07375 ad06dcb80b070f6b335294e627542651 167 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 10 163 31.798 T 16-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 BER92_RS07375 ad06dcb80b070f6b335294e627542651 167 Gene3D G3DSA:3.40.50.7700 3 164 3.4E-72 T 16-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 BER92_RS07375 ad06dcb80b070f6b335294e627542651 167 Pfam PF00731 AIR carboxylase 10 157 1.6E-61 T 16-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 BER92_RS07375 ad06dcb80b070f6b335294e627542651 167 PANTHER PTHR23046 8 167 7.2E-83 T 16-09-2016 BER92_RS07375 ad06dcb80b070f6b335294e627542651 167 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 10 164 5.7E-63 T 16-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 BER92_RS07950 aa8a504fc6889bf8462a8a81099369da 136 SUPERFAMILY SSF46785 6 131 3.84E-38 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS07950 aa8a504fc6889bf8462a8a81099369da 136 Gene3D G3DSA:1.10.10.10 4 81 2.4E-29 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS07950 aa8a504fc6889bf8462a8a81099369da 136 Pfam PF01475 Ferric uptake regulator family 9 129 2.5E-42 T 16-09-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 BER92_RS07950 aa8a504fc6889bf8462a8a81099369da 136 PANTHER PTHR33202 6 129 1.8E-36 T 16-09-2016 BER92_RS05730 988c2749da3c9be35a8a19cbe06d50d2 242 Gene3D G3DSA:3.40.50.1820 20 73 2.6E-4 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS05730 988c2749da3c9be35a8a19cbe06d50d2 242 Gene3D G3DSA:3.40.50.1820 74 196 8.1E-11 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS05730 988c2749da3c9be35a8a19cbe06d50d2 242 SUPERFAMILY SSF53474 24 196 1.88E-8 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS03125 5b603684e5f5da07045de6c0115edbc6 268 Pfam PF01609 Transposase DDE domain 100 251 7.8E-21 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03125 5b603684e5f5da07045de6c0115edbc6 268 PANTHER PTHR30007 7 258 1.7E-132 T 16-09-2016 BER92_RS03125 5b603684e5f5da07045de6c0115edbc6 268 PANTHER PTHR30007:SF17 7 258 1.7E-132 T 16-09-2016 BER92_RS03125 5b603684e5f5da07045de6c0115edbc6 268 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 5.8E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS02495 3d8c98503b9653f9b6c8b39d0ccf521b 283 SUPERFAMILY SSF53335 68 266 7.29E-24 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS02495 3d8c98503b9653f9b6c8b39d0ccf521b 283 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 180 243 1.7E-4 T 16-09-2016 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 BER92_RS02495 3d8c98503b9653f9b6c8b39d0ccf521b 283 Gene3D G3DSA:3.40.50.150 120 269 1.6E-14 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS03340 04026289d6bcf32fe216c8eaa30754a0 333 Gene3D G3DSA:1.10.1040.10 19 314 4.1E-107 T 16-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BER92_RS03340 04026289d6bcf32fe216c8eaa30754a0 333 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 173 316 7.9E-62 T 16-09-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS03340 04026289d6bcf32fe216c8eaa30754a0 333 SUPERFAMILY SSF48179 173 322 1.62E-66 T 16-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 BER92_RS03340 04026289d6bcf32fe216c8eaa30754a0 333 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 8 166 2.9E-69 T 16-09-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS03340 04026289d6bcf32fe216c8eaa30754a0 333 PANTHER PTHR21371 8 331 1.2E-177 T 16-09-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS03340 04026289d6bcf32fe216c8eaa30754a0 333 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 8 316 1.1E-125 T 16-09-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS03340 04026289d6bcf32fe216c8eaa30754a0 333 SUPERFAMILY SSF51735 7 172 9.24E-63 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS03340 04026289d6bcf32fe216c8eaa30754a0 333 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 1 318 41.481 T 16-09-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 BER92_RS05785 6f1340b26bce0c9193b0254594b44000 245 Gene3D G3DSA:1.10.3810.10 69 236 3.7E-55 T 16-09-2016 BER92_RS05785 6f1340b26bce0c9193b0254594b44000 245 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 15 239 43.636 T 16-09-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 BER92_RS05785 6f1340b26bce0c9193b0254594b44000 245 PANTHER PTHR30400:SF0 3 242 3.3E-104 T 16-09-2016 BER92_RS05785 6f1340b26bce0c9193b0254594b44000 245 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 19 236 1.5E-82 T 16-09-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 BER92_RS05785 6f1340b26bce0c9193b0254594b44000 245 SUPERFAMILY SSF53955 67 237 1.21E-55 T 16-09-2016 IPR023346 Lysozyme-like domain BER92_RS05785 6f1340b26bce0c9193b0254594b44000 245 PANTHER PTHR30400 3 242 3.3E-104 T 16-09-2016 BER92_RS05785 6f1340b26bce0c9193b0254594b44000 245 Pfam PF00912 Transglycosylase 70 231 1.5E-45 T 16-09-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 Gene3D G3DSA:1.20.1250.20 271 466 6.9E-14 T 16-09-2016 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 PANTHER PTHR23501 14 473 3.4E-256 T 16-09-2016 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 PANTHER PTHR23501:SF1 14 473 3.4E-256 T 16-09-2016 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 Pfam PF07690 Major Facilitator Superfamily 22 413 1.6E-43 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 20 421 1.5E-72 T 16-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 Gene3D G3DSA:1.20.1250.20 16 200 3.3E-31 T 16-09-2016 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 SUPERFAMILY SSF103473 251 466 5.1E-61 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 SUPERFAMILY SSF103473 15 203 5.1E-61 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 2.8E-10 T 16-09-2016 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 2.8E-10 T 16-09-2016 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 2.8E-10 T 16-09-2016 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 206 224 2.8E-10 T 16-09-2016 BER92_RS14700 66086ba851ee6781f6068eb76cbf61bf 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 2.8E-10 T 16-09-2016 BER92_RS07780 82c2195096ed3cd3272fc96dfa53f777 266 SUPERFAMILY SSF47090 46 118 2.88E-18 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS07780 82c2195096ed3cd3272fc96dfa53f777 266 Pfam PF01471 Putative peptidoglycan binding domain 51 112 8.0E-18 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS07780 82c2195096ed3cd3272fc96dfa53f777 266 PANTHER PTHR35243 143 255 9.7E-13 T 16-09-2016 BER92_RS07780 82c2195096ed3cd3272fc96dfa53f777 266 Gene3D G3DSA:1.10.101.10 43 118 7.2E-22 T 16-09-2016 IPR002477 Peptidoglycan binding-like BER92_RS18980 0a8a1ba5e1a96823b2acc636f796386c 261 PANTHER PTHR30399 20 253 1.4E-101 T 16-09-2016 BER92_RS18980 0a8a1ba5e1a96823b2acc636f796386c 261 PANTHER PTHR30399:SF3 20 253 1.4E-101 T 16-09-2016 BER92_RS18980 0a8a1ba5e1a96823b2acc636f796386c 261 Pfam PF01863 Protein of unknown function DUF45 41 245 6.2E-45 T 16-09-2016 IPR002725 Protein of unknown function DUF45 BER92_RS13620 56e8b28b407ef24eb7a8d3625b69a285 227 Pfam PF11306 Protein of unknown function (DUF3108) 14 216 4.0E-19 T 16-09-2016 IPR021457 Protein of unknown function DUF3108 BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 SUPERFAMILY SSF69279 52 170 2.72E-10 T 16-09-2016 BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 SUPERFAMILY SSF69279 207 224 2.72E-10 T 16-09-2016 BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 14 335 3.5E-38 T 16-09-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 PANTHER PTHR32305:SF7 201 332 4.5E-19 T 16-09-2016 BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 SUPERFAMILY SSF69255 235 329 3.14E-25 T 16-09-2016 BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 PANTHER PTHR32305 201 332 4.5E-19 T 16-09-2016 BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 Gene3D G3DSA:2.40.50.230 242 329 1.1E-29 T 16-09-2016 IPR006531 Gp5 N-terminal BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 Pfam PF05954 Phage late control gene D protein (GPD) 1 168 6.7E-22 T 16-09-2016 BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 399 503 3.6E-34 T 16-09-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER92_RS11305 082c1f619c24ebc433783a5c1ff292d5 752 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 564 720 5.0E-33 T 16-09-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER92_RS03690 42a462a09fd92a12df004ddf17cd58ed 42 PANTHER PTHR35604:SF2 1 42 6.8E-25 T 16-09-2016 BER92_RS03690 42a462a09fd92a12df004ddf17cd58ed 42 Pfam PF01609 Transposase DDE domain 2 42 9.3E-9 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS03690 42a462a09fd92a12df004ddf17cd58ed 42 PANTHER PTHR35604 1 42 6.8E-25 T 16-09-2016 BER92_RS05600 b958d59e402045a579cb73b5de047d88 459 SUPERFAMILY SSF53590 107 364 9.29E-29 T 16-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER92_RS05600 b958d59e402045a579cb73b5de047d88 459 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 111 408 3.7E-11 T 16-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER92_RS05600 b958d59e402045a579cb73b5de047d88 459 Gene3D G3DSA:3.90.245.10 108 340 1.3E-17 T 16-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER92_RS00250 1e9a51b806d04a29b792214d732643b6 266 Pfam PF01609 Transposase DDE domain 126 224 8.6E-8 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS00250 1e9a51b806d04a29b792214d732643b6 266 SUPERFAMILY SSF53098 104 236 1.59E-7 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS00250 1e9a51b806d04a29b792214d732643b6 266 PANTHER PTHR37529 12 236 1.2E-27 T 16-09-2016 BER92_RS00250 1e9a51b806d04a29b792214d732643b6 266 Pfam PF13006 Insertion element 4 transposase N-terminal 12 109 6.8E-26 T 16-09-2016 IPR024473 Transposase, IS4, N-terminal BER92_RS16515 70086eecb84777b98022dfbfda74a831 157 PANTHER PTHR37805 1 157 1.1E-80 T 16-09-2016 BER92_RS16515 70086eecb84777b98022dfbfda74a831 157 Pfam PF07308 Protein of unknown function (DUF1456) 88 154 2.1E-24 T 16-09-2016 IPR009921 Domain of unknown function DUF1456 BER92_RS16515 70086eecb84777b98022dfbfda74a831 157 Pfam PF07308 Protein of unknown function (DUF1456) 3 72 7.0E-24 T 16-09-2016 IPR009921 Domain of unknown function DUF1456 BER92_RS16515 70086eecb84777b98022dfbfda74a831 157 PANTHER PTHR37805:SF1 1 157 1.1E-80 T 16-09-2016 BER92_RS17810 94bda7fa171e170e3aaae17a0b9956be 153 SUPERFAMILY SSF52833 38 122 1.12E-13 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS17810 94bda7fa171e170e3aaae17a0b9956be 153 Pfam PF13899 Thioredoxin-like 31 115 1.1E-15 T 16-09-2016 BER92_RS17810 94bda7fa171e170e3aaae17a0b9956be 153 Gene3D G3DSA:3.40.30.10 24 145 9.4E-25 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS03365 a5ee323620e81c279d31bb9b00285404 360 SMART SM00862 15 91 3.3E-6 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS03365 a5ee323620e81c279d31bb9b00285404 360 Gene3D G3DSA:1.10.10.10 14 94 5.9E-12 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS03365 a5ee323620e81c279d31bb9b00285404 360 SUPERFAMILY SSF46894 13 93 2.18E-9 T 16-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BER92_RS03365 a5ee323620e81c279d31bb9b00285404 360 Pfam PF00486 Transcriptional regulatory protein, C terminal 17 91 1.2E-9 T 16-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BER92_RS06045 04a0d4dbe7980a9a1a8762e29aaf51d4 472 Pfam PF02706 Chain length determinant protein 23 192 1.4E-21 T 16-09-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 BER92_RS06045 04a0d4dbe7980a9a1a8762e29aaf51d4 472 PANTHER PTHR32309 20 463 3.4E-100 T 16-09-2016 BER92_RS06045 04a0d4dbe7980a9a1a8762e29aaf51d4 472 Pfam PF13807 G-rich domain on putative tyrosine kinase 387 460 3.2E-22 T 16-09-2016 IPR032807 Tyrosine kinase, G-rich domain BER92_RS06045 04a0d4dbe7980a9a1a8762e29aaf51d4 472 PANTHER PTHR32309:SF13 20 463 3.4E-100 T 16-09-2016 BER92_RS10230 5852e377b8bdaf1fa0752ce03dec0b8d 103 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 4 97 5.5E-17 T 16-09-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 BER92_RS10230 5852e377b8bdaf1fa0752ce03dec0b8d 103 SUPERFAMILY SSF101498 38 97 2.75E-12 T 16-09-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 BER92_RS10230 5852e377b8bdaf1fa0752ce03dec0b8d 103 Pfam PF04316 Anti-sigma-28 factor, FlgM 42 96 1.3E-13 T 16-09-2016 IPR031316 Anti-sigma-28 factor FlgM, C-terminal BER92_RS16675 7448b7804dbc1ade36bdc9508f5a289e 188 Pfam PF09618 CRISPR-associated protein (Cas_Csy4) 4 188 1.9E-60 T 16-09-2016 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 BER92_RS16675 7448b7804dbc1ade36bdc9508f5a289e 188 TIGRFAM TIGR02563 cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST 3 188 1.8E-51 T 16-09-2016 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 BER92_RS03150 ad1816d7439489f34c880668a726ea66 438 Pfam PF07690 Major Facilitator Superfamily 20 391 3.6E-20 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS03150 ad1816d7439489f34c880668a726ea66 438 SUPERFAMILY SSF103473 13 433 6.8E-37 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS03150 ad1816d7439489f34c880668a726ea66 438 Gene3D G3DSA:1.20.1250.20 242 433 7.2E-14 T 16-09-2016 BER92_RS03150 ad1816d7439489f34c880668a726ea66 438 Gene3D G3DSA:1.20.1250.20 13 207 8.5E-19 T 16-09-2016 BER92_RS03150 ad1816d7439489f34c880668a726ea66 438 PANTHER PTHR19432 2 434 1.9E-44 T 16-09-2016 BER92_RS14995 89fb432a2f6951e771acb6c9a234a0d3 199 Pfam PF00583 Acetyltransferase (GNAT) family 49 141 3.2E-6 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS14995 89fb432a2f6951e771acb6c9a234a0d3 199 SUPERFAMILY SSF55729 2 152 5.5E-15 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS14995 89fb432a2f6951e771acb6c9a234a0d3 199 Gene3D G3DSA:3.40.630.30 1 147 3.6E-15 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS14995 89fb432a2f6951e771acb6c9a234a0d3 199 PIRSF PIRSF028520 1 164 1.6E-83 T 16-09-2016 IPR016890 Uncharacterised conserved protein UCP028520 BER92_RS18915 307b299554bbd0f7fa5f864dfcebf207 126 PANTHER PTHR39600 1 126 9.2E-35 T 16-09-2016 BER92_RS18915 307b299554bbd0f7fa5f864dfcebf207 126 Gene3D G3DSA:3.30.10.10 70 122 4.4E-4 T 16-09-2016 BER92_RS18915 307b299554bbd0f7fa5f864dfcebf207 126 Pfam PF11720 Peptidase inhibitor I78 family 62 126 3.8E-22 T 16-09-2016 IPR021719 Proteinase inhibitor I78 BER92_RS13795 8d1a727c9083aa8014433723aa9f8eab 430 SUPERFAMILY SSF55486 186 394 2.15E-23 T 16-09-2016 BER92_RS13795 8d1a727c9083aa8014433723aa9f8eab 430 Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like 186 409 8.3E-77 T 16-09-2016 BER92_RS13795 8d1a727c9083aa8014433723aa9f8eab 430 Gene3D G3DSA:3.40.390.10 185 385 1.5E-18 T 16-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 BER92_RS18965 69c9c84ce5981dd7e21732c6106a3191 294 PANTHER PTHR15629 27 215 1.7E-58 T 16-09-2016 BER92_RS18965 69c9c84ce5981dd7e21732c6106a3191 294 Pfam PF04366 Las17-binding protein actin regulator 100 211 3.9E-27 T 16-09-2016 IPR007461 Ysc84 actin-binding domain BER92_RS19080 031dd93a1b520b563633938da119ffec 92 SUPERFAMILY SSF54427 1 91 4.08E-25 T 16-09-2016 IPR032710 NTF2-like domain BER92_RS19080 031dd93a1b520b563633938da119ffec 92 Gene3D G3DSA:3.10.450.50 1 91 4.3E-24 T 16-09-2016 IPR032710 NTF2-like domain BER92_RS16935 81b91eab1b691b98ae584a696a5ae6b4 121 SUPERFAMILY SSF46785 2 118 2.57E-28 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS16935 81b91eab1b691b98ae584a696a5ae6b4 121 PANTHER PTHR34134 1 120 2.5E-38 T 16-09-2016 BER92_RS16935 81b91eab1b691b98ae584a696a5ae6b4 121 PIRSF PIRSF019455 1 121 1.7E-39 T 16-09-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 BER92_RS16935 81b91eab1b691b98ae584a696a5ae6b4 121 PANTHER PTHR34134:SF1 1 120 2.5E-38 T 16-09-2016 BER92_RS16935 81b91eab1b691b98ae584a696a5ae6b4 121 Gene3D G3DSA:1.10.10.10 1 76 9.7E-26 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS16935 81b91eab1b691b98ae584a696a5ae6b4 121 Pfam PF03965 Penicillinase repressor 3 115 6.4E-36 T 16-09-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 BER92_RS16425 d6bba5a88e26974c031df4c9d1fdc185 143 Pfam PF01638 HxlR-like helix-turn-helix 31 115 1.8E-26 T 16-09-2016 IPR002577 Helix-turn-helix, HxlR type BER92_RS16425 d6bba5a88e26974c031df4c9d1fdc185 143 PANTHER PTHR33204:SF15 9 142 7.4E-69 T 16-09-2016 BER92_RS16425 d6bba5a88e26974c031df4c9d1fdc185 143 SUPERFAMILY SSF46785 18 128 2.88E-32 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS16425 d6bba5a88e26974c031df4c9d1fdc185 143 PANTHER PTHR33204 9 142 7.4E-69 T 16-09-2016 BER92_RS16425 d6bba5a88e26974c031df4c9d1fdc185 143 Gene3D G3DSA:1.10.10.10 17 128 1.4E-41 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS06930 a22bcfad398747a926116a3a3e01d8b1 58 Pfam PF12244 Protein of unknown function (DUF3606) 5 57 3.1E-17 T 16-09-2016 IPR022037 Protein of unknown function DUF3606 BER92_RS12195 39ce3d746c2bb131681fb3a371901601 196 Gene3D G3DSA:3.40.50.1000 84 187 3.8E-20 T 16-09-2016 IPR023214 HAD-like domain BER92_RS12195 39ce3d746c2bb131681fb3a371901601 196 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 185 1.5E-20 T 16-09-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 BER92_RS12195 39ce3d746c2bb131681fb3a371901601 196 SUPERFAMILY SSF56784 1 186 1.36E-21 T 16-09-2016 IPR023214 HAD-like domain BER92_RS12195 39ce3d746c2bb131681fb3a371901601 196 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 182 2.5E-27 T 16-09-2016 BER92_RS12195 39ce3d746c2bb131681fb3a371901601 196 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 190 1.5E-28 T 16-09-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial BER92_RS02300 0a37ee6f2db1cd235a251ff0b24f1933 214 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 198 7.1E-57 T 16-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 BER92_RS02300 0a37ee6f2db1cd235a251ff0b24f1933 214 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 16-09-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 BER92_RS02300 0a37ee6f2db1cd235a251ff0b24f1933 214 Gene3D G3DSA:3.40.50.1240 1 203 7.2E-58 T 16-09-2016 IPR029033 Histidine phosphatase superfamily BER92_RS02300 0a37ee6f2db1cd235a251ff0b24f1933 214 PANTHER PTHR23029 1 201 2.2E-49 T 16-09-2016 BER92_RS02300 0a37ee6f2db1cd235a251ff0b24f1933 214 SUPERFAMILY SSF53254 1 203 1.8E-54 T 16-09-2016 IPR029033 Histidine phosphatase superfamily BER92_RS02300 0a37ee6f2db1cd235a251ff0b24f1933 214 SMART SM00855 2 158 6.0E-22 T 16-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 BER92_RS13985 3bd8a600ebb1d727878c92aca029b396 354 Pfam PF02618 YceG-like family 51 339 3.9E-74 T 16-09-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like BER92_RS13985 3bd8a600ebb1d727878c92aca029b396 354 PANTHER PTHR30518 1 352 8.7E-91 T 16-09-2016 BER92_RS13985 3bd8a600ebb1d727878c92aca029b396 354 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 19 344 1.2E-75 T 16-09-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like BER92_RS13985 3bd8a600ebb1d727878c92aca029b396 354 Gene3D G3DSA:3.30.160.60 312 346 6.9E-17 T 16-09-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 BER92_RS13985 3bd8a600ebb1d727878c92aca029b396 354 PANTHER PTHR30518:SF2 1 352 8.7E-91 T 16-09-2016 BER92_RS09030 6ce2951bf97e0c8e751f625d4554291e 322 Pfam PF00953 Glycosyl transferase family 4 77 210 1.7E-24 T 16-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS09030 6ce2951bf97e0c8e751f625d4554291e 322 PANTHER PTHR22926:SF3 6 316 3.4E-66 T 16-09-2016 BER92_RS09030 6ce2951bf97e0c8e751f625d4554291e 322 PANTHER PTHR22926 6 316 3.4E-66 T 16-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 BER92_RS07215 316e88af8b4abf53d1b3c26fd6004f51 142 Gene3D G3DSA:1.10.490.10 18 141 6.5E-33 T 16-09-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 BER92_RS07215 316e88af8b4abf53d1b3c26fd6004f51 142 PANTHER PTHR10681 23 135 2.7E-18 T 16-09-2016 BER92_RS07215 316e88af8b4abf53d1b3c26fd6004f51 142 PIRSF PIRSF002030 14 142 3.3E-44 T 16-09-2016 IPR016339 Truncated hemoglobin, group 1 BER92_RS07215 316e88af8b4abf53d1b3c26fd6004f51 142 SUPERFAMILY SSF46458 19 141 9.59E-29 T 16-09-2016 IPR009050 Globin-like BER92_RS07215 316e88af8b4abf53d1b3c26fd6004f51 142 Pfam PF01152 Bacterial-like globin 27 139 1.8E-11 T 16-09-2016 IPR001486 Truncated hemoglobin GO:0019825 BER92_RS13800 f230c859cc670b3a6a614259c873ae38 128 Pfam PF01609 Transposase DDE domain 2 116 3.2E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS13800 f230c859cc670b3a6a614259c873ae38 128 PANTHER PTHR30007 1 122 7.3E-22 T 16-09-2016 BER92_RS13800 f230c859cc670b3a6a614259c873ae38 128 PANTHER PTHR30007:SF0 1 122 7.3E-22 T 16-09-2016 BER92_RS14060 29a97ecfd4a7c6b78f71bbd07208ea5f 651 SMART SM00460 402 473 1.0E-21 T 16-09-2016 IPR002931 Transglutaminase-like BER92_RS14060 29a97ecfd4a7c6b78f71bbd07208ea5f 651 Pfam PF01841 Transglutaminase-like superfamily 355 471 5.9E-26 T 16-09-2016 IPR002931 Transglutaminase-like BER92_RS14060 29a97ecfd4a7c6b78f71bbd07208ea5f 651 PANTHER PTHR33490 4 609 1.6E-129 T 16-09-2016 BER92_RS14060 29a97ecfd4a7c6b78f71bbd07208ea5f 651 Pfam PF11992 Domain of unknown function (DUF3488) 14 326 3.5E-84 T 16-09-2016 IPR021878 Protein of unknown function DUF3488 BER92_RS14060 29a97ecfd4a7c6b78f71bbd07208ea5f 651 PANTHER PTHR33490:SF4 4 609 1.6E-129 T 16-09-2016 BER92_RS14060 29a97ecfd4a7c6b78f71bbd07208ea5f 651 SUPERFAMILY SSF54001 277 583 3.08E-64 T 16-09-2016 BER92_RS14060 29a97ecfd4a7c6b78f71bbd07208ea5f 651 Gene3D G3DSA:3.90.260.10 306 584 2.0E-48 T 16-09-2016 IPR002931 Transglutaminase-like BER92_RS15010 459fd4070c47e3667f24db4efbbce4ef 85 PANTHER PTHR33404 1 82 9.8E-24 T 16-09-2016 BER92_RS15010 459fd4070c47e3667f24db4efbbce4ef 85 SUPERFAMILY SSF55229 31 82 3.92E-13 T 16-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 BER92_RS15010 459fd4070c47e3667f24db4efbbce4ef 85 Pfam PF03776 Septum formation topological specificity factor MinE 13 80 4.6E-20 T 16-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 BER92_RS15010 459fd4070c47e3667f24db4efbbce4ef 85 Gene3D G3DSA:3.30.1070.10 32 82 1.9E-16 T 16-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 BER92_RS15010 459fd4070c47e3667f24db4efbbce4ef 85 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 81 7.5E-27 T 16-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 BER92_RS15010 459fd4070c47e3667f24db4efbbce4ef 85 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 82 16.982 T 16-09-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 BER92_RS04650 6345034c6fbff6a0ec45e9830cdc3c74 293 Gene3D G3DSA:1.25.10.10 216 288 4.8E-4 T 16-09-2016 IPR011989 Armadillo-like helical BER92_RS09040 002b02900247f7f666efc18352bfff75 297 Pfam PF00483 Nucleotidyl transferase 12 268 1.4E-30 T 16-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 BER92_RS09040 002b02900247f7f666efc18352bfff75 297 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 267 9.2E-106 T 16-09-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 BER92_RS09040 002b02900247f7f666efc18352bfff75 297 SUPERFAMILY SSF53448 5 279 8.11E-63 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS09040 002b02900247f7f666efc18352bfff75 297 Gene3D G3DSA:3.90.550.10 6 277 5.8E-66 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS09040 002b02900247f7f666efc18352bfff75 297 PANTHER PTHR22572 7 277 2.1E-98 T 16-09-2016 BER92_RS09040 002b02900247f7f666efc18352bfff75 297 PANTHER PTHR22572:SF14 7 277 2.1E-98 T 16-09-2016 BER92_RS08710 f0249ab83b0cc43463b1137fa5776374 375 PANTHER PTHR11101 4 365 1.6E-93 T 16-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 BER92_RS08710 f0249ab83b0cc43463b1137fa5776374 375 Pfam PF01384 Phosphate transporter family 191 361 4.7E-45 T 16-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 BER92_RS08710 f0249ab83b0cc43463b1137fa5776374 375 Pfam PF01384 Phosphate transporter family 19 172 5.1E-34 T 16-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 BER92_RS07090 2e4f930a06d0eda2ca588ec6fc55f0d0 322 PANTHER PTHR35604:SF2 2 322 2.6E-238 T 16-09-2016 BER92_RS07090 2e4f930a06d0eda2ca588ec6fc55f0d0 322 Pfam PF01609 Transposase DDE domain 135 310 3.8E-31 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS07090 2e4f930a06d0eda2ca588ec6fc55f0d0 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS07090 2e4f930a06d0eda2ca588ec6fc55f0d0 322 PANTHER PTHR35604 2 322 2.6E-238 T 16-09-2016 BER92_RS02245 57733cd8eb4d5b8afbb1e377b63ec81a 289 Gene3D G3DSA:3.10.290.10 39 101 9.1E-15 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS02245 57733cd8eb4d5b8afbb1e377b63ec81a 289 PANTHER PTHR21600:SF23 39 279 5.1E-118 T 16-09-2016 BER92_RS02245 57733cd8eb4d5b8afbb1e377b63ec81a 289 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 103 271 3.8E-39 T 16-09-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BER92_RS02245 57733cd8eb4d5b8afbb1e377b63ec81a 289 Pfam PF00849 RNA pseudouridylate synthase 99 241 3.3E-17 T 16-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS02245 57733cd8eb4d5b8afbb1e377b63ec81a 289 SUPERFAMILY SSF55120 99 275 7.2E-35 T 16-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BER92_RS02245 57733cd8eb4d5b8afbb1e377b63ec81a 289 SUPERFAMILY SSF55174 39 122 4.32E-12 T 16-09-2016 BER92_RS02245 57733cd8eb4d5b8afbb1e377b63ec81a 289 PANTHER PTHR21600 39 279 5.1E-118 T 16-09-2016 BER92_RS02245 57733cd8eb4d5b8afbb1e377b63ec81a 289 Pfam PF01479 S4 domain 39 80 2.1E-8 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS02245 57733cd8eb4d5b8afbb1e377b63ec81a 289 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 137 151 - T 16-09-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BER92_RS17235 dfed4d24bc8688f880ffcedc548f1d6c 245 Pfam PF11828 Protein of unknown function (DUF3348) 1 243 6.5E-82 T 16-09-2016 IPR021783 Protein of unknown function DUF3348 BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 Gene3D G3DSA:1.10.287.130 202 240 4.6E-4 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 298 402 2.4E-10 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 SMART SM00387 295 403 5.9E-12 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 PANTHER PTHR24423 174 405 4.3E-19 T 16-09-2016 BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 PANTHER PTHR24423 76 81 4.3E-19 T 16-09-2016 BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 SUPERFAMILY SSF47384 197 241 5.69E-6 T 16-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 348 6.5E-6 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 381 6.5E-6 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 400 6.5E-6 T 16-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 Gene3D G3DSA:3.30.565.10 280 403 5.1E-18 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS10715 6d3ed264da028a71716fb9b49d5841c7 408 SUPERFAMILY SSF55874 272 401 2.49E-19 T 16-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER92_RS14500 e1b44d4015d005fc4e1b093054d0a7fe 258 Pfam PF11218 Protein of unknown function (DUF3011) 37 255 3.3E-73 T 16-09-2016 IPR021381 Protein of unknown function DUF3011 BER92_RS09530 2d14ac8a7b8d2c0f63e0f210a8162abf 253 Pfam PF13557 Putative MetA-pathway of phenol degradation 27 253 6.9E-17 T 16-09-2016 IPR025737 MetA-pathway of phenol degradation, putative BER92_RS04015 d9642aa9cbf75dcf9f37842bbe03c0cd 532 PANTHER PTHR31610 4 526 3.6E-214 T 16-09-2016 BER92_RS09620 5abae89ae679323aeb1a3b5862296638 390 Gene3D G3DSA:3.40.50.300 6 180 2.4E-41 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09620 5abae89ae679323aeb1a3b5862296638 390 Pfam PF05707 Zonular occludens toxin (Zot) 52 179 1.9E-18 T 16-09-2016 IPR008900 Zona occludens toxin BER92_RS09620 5abae89ae679323aeb1a3b5862296638 390 SUPERFAMILY SSF52540 10 147 1.39E-6 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 Gene3D G3DSA:3.40.50.720 8 252 1.3E-70 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 199 0.0079 T 16-09-2016 BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PANTHER PTHR24322:SF356 10 146 1.4E-54 T 16-09-2016 BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PANTHER PTHR24322:SF356 162 198 1.4E-54 T 16-09-2016 BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 3.0E-10 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 3.0E-10 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.0E-10 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 251 1.8E-46 T 16-09-2016 BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PANTHER PTHR24322 10 146 1.4E-54 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PANTHER PTHR24322 162 198 1.4E-54 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 3.9E-30 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 3.9E-30 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.9E-30 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 3.9E-30 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.9E-30 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 3.9E-30 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 SUPERFAMILY SSF51735 8 252 1.46E-62 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS09315 fc282d33bbb2aee45aa4e977b7420482 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS01705 0f8740cf8b6ed51940cfa4bb798e049e 324 PANTHER PTHR30606 1 323 2.0E-265 T 16-09-2016 BER92_RS01705 0f8740cf8b6ed51940cfa4bb798e049e 324 PIRSF PIRSF028561 1 320 2.5E-164 T 16-09-2016 IPR014548 Predicted acyltransferase BER92_RS01705 0f8740cf8b6ed51940cfa4bb798e049e 324 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 85 296 1.4E-7 T 16-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BER92_RS01705 0f8740cf8b6ed51940cfa4bb798e049e 324 PANTHER PTHR30606:SF6 1 323 2.0E-265 T 16-09-2016 BER92_RS05315 c9d737d69c2eac3a7b8f3c40d070e031 110 Gene3D G3DSA:3.40.50.1820 1 107 4.8E-26 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS05315 c9d737d69c2eac3a7b8f3c40d070e031 110 PANTHER PTHR11559:SF142 1 109 6.6E-25 T 16-09-2016 BER92_RS05315 c9d737d69c2eac3a7b8f3c40d070e031 110 Pfam PF00135 Carboxylesterase family 1 91 4.7E-21 T 16-09-2016 IPR002018 Carboxylesterase, type B BER92_RS05315 c9d737d69c2eac3a7b8f3c40d070e031 110 SUPERFAMILY SSF53474 1 106 8.71E-24 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS05315 c9d737d69c2eac3a7b8f3c40d070e031 110 PANTHER PTHR11559 1 109 6.6E-25 T 16-09-2016 BER92_RS19110 6b2b64534961f9fc0edc1e74f3f33137 233 Pfam PF13835 Domain of unknown function (DUF4194) 51 209 1.9E-43 T 16-09-2016 IPR025449 Protein of unknown function DUF4194 BER92_RS11975 396f2a4aae30330cd05254909b766b01 239 PANTHER PTHR10108:SF910 6 233 5.3E-94 T 16-09-2016 BER92_RS11975 396f2a4aae30330cd05254909b766b01 239 PANTHER PTHR10108 6 233 5.3E-94 T 16-09-2016 BER92_RS11975 396f2a4aae30330cd05254909b766b01 239 Pfam PF13489 Methyltransferase domain 53 207 1.7E-24 T 16-09-2016 BER92_RS11975 396f2a4aae30330cd05254909b766b01 239 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 14 239 38.794 T 16-09-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 BER92_RS11975 396f2a4aae30330cd05254909b766b01 239 SUPERFAMILY SSF53335 18 234 1.88E-50 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS11975 396f2a4aae30330cd05254909b766b01 239 Gene3D G3DSA:3.40.50.150 27 221 2.5E-47 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS11975 396f2a4aae30330cd05254909b766b01 239 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 233 6.8E-89 T 16-09-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 BER92_RS13125 f79f65ea0cb4e53827e994a6d8633417 428 Gene3D G3DSA:3.40.720.10 10 332 2.5E-79 T 16-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 BER92_RS13125 f79f65ea0cb4e53827e994a6d8633417 428 SUPERFAMILY SSF53649 42 408 1.89E-90 T 16-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 BER92_RS13125 f79f65ea0cb4e53827e994a6d8633417 428 PANTHER PTHR10151 1 426 1.3E-143 T 16-09-2016 IPR024873 Ectonucleotide pyrophosphatase/phosphodiesterase family BER92_RS13125 f79f65ea0cb4e53827e994a6d8633417 428 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 50 368 8.5E-83 T 16-09-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 BER92_RS17690 158836f3bad6192e1d62e0b26178ff26 301 PANTHER PTHR12366 13 245 1.4E-167 T 16-09-2016 BER92_RS17690 158836f3bad6192e1d62e0b26178ff26 301 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 71 224 7.6E-48 T 16-09-2016 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 BER92_RS17690 158836f3bad6192e1d62e0b26178ff26 301 SUPERFAMILY SSF51197 70 230 9.06E-21 T 16-09-2016 BER92_RS17690 158836f3bad6192e1d62e0b26178ff26 301 PANTHER PTHR12366:SF25 13 245 1.4E-167 T 16-09-2016 BER92_RS17690 158836f3bad6192e1d62e0b26178ff26 301 Gene3D G3DSA:2.60.120.330 124 224 6.7E-16 T 16-09-2016 IPR027443 Isopenicillin N synthase-like BER92_RS08975 f5a2eef191d5c5b6bbde21d3916bf8d1 455 Pfam PF01609 Transposase DDE domain 284 421 2.1E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS08975 f5a2eef191d5c5b6bbde21d3916bf8d1 455 Pfam PF05598 Transposase domain (DUF772) 59 133 2.3E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS08975 f5a2eef191d5c5b6bbde21d3916bf8d1 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS08975 f5a2eef191d5c5b6bbde21d3916bf8d1 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS18085 665d976bc6d4d8529eb341a215aecfe2 161 PANTHER PTHR28026 1 160 6.9E-69 T 16-09-2016 BER92_RS18085 665d976bc6d4d8529eb341a215aecfe2 161 PANTHER PTHR28026:SF3 1 160 6.9E-69 T 16-09-2016 BER92_RS18085 665d976bc6d4d8529eb341a215aecfe2 161 Pfam PF06127 Protein of unknown function (DUF962) 10 156 4.9E-25 T 16-09-2016 IPR009305 Protein of unknown function DUF962 BER92_RS15185 da50006968d2918864594211c2cae45c 307 Pfam PF13503 Domain of unknown function (DUF4123) 61 156 2.3E-10 T 16-09-2016 IPR025391 Domain of unknown function DUF4123 BER92_RS01990 e056fcebc0cac40af227d938350e1062 213 Pfam PF06080 Protein of unknown function (DUF938) 3 211 6.5E-82 T 16-09-2016 IPR010342 Protein of unknown function DUF938 BER92_RS01990 e056fcebc0cac40af227d938350e1062 213 PANTHER PTHR20974 1 212 1.2E-84 T 16-09-2016 IPR010342 Protein of unknown function DUF938 BER92_RS01990 e056fcebc0cac40af227d938350e1062 213 Gene3D G3DSA:3.40.50.150 24 211 2.3E-8 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS01990 e056fcebc0cac40af227d938350e1062 213 PANTHER PTHR20974:SF0 1 212 1.2E-84 T 16-09-2016 BER92_RS01990 e056fcebc0cac40af227d938350e1062 213 SUPERFAMILY SSF53335 6 209 1.19E-19 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS18190 be12cd1c7f5509b8975408c79920d284 435 PANTHER PTHR11785:SF341 14 434 1.9E-168 T 16-09-2016 BER92_RS18190 be12cd1c7f5509b8975408c79920d284 435 PANTHER PTHR11785 14 434 1.9E-168 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS18190 be12cd1c7f5509b8975408c79920d284 435 Pfam PF13520 Amino acid permease 18 406 9.4E-51 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS18190 be12cd1c7f5509b8975408c79920d284 435 PIRSF PIRSF006060 1 434 1.0E-71 T 16-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 BER92_RS16780 e54870ff547fa6b3cd5d7dbdff456baf 334 ProSitePatterns PS00158 Fructose-bisphosphate aldolase class-I active site. 211 221 - T 16-09-2016 IPR029768 Fructose-bisphosphate aldolase class-I active site KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 BER92_RS16780 e54870ff547fa6b3cd5d7dbdff456baf 334 Gene3D G3DSA:3.20.20.70 4 333 2.4E-145 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS16780 e54870ff547fa6b3cd5d7dbdff456baf 334 PANTHER PTHR11627 4 334 1.2E-184 T 16-09-2016 BER92_RS16780 e54870ff547fa6b3cd5d7dbdff456baf 334 Pfam PF00274 Fructose-bisphosphate aldolase class-I 6 333 3.2E-136 T 16-09-2016 IPR000741 Fructose-bisphosphate aldolase, class-I GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 BER92_RS16780 e54870ff547fa6b3cd5d7dbdff456baf 334 PANTHER PTHR11627:SF20 4 334 1.2E-184 T 16-09-2016 BER92_RS16780 e54870ff547fa6b3cd5d7dbdff456baf 334 SUPERFAMILY SSF51569 4 333 2.93E-130 T 16-09-2016 BER92_RS03510 fa73d33f092d4f964b5a29ed5643e397 156 Gene3D G3DSA:3.10.590.10 6 154 1.0E-31 T 16-09-2016 IPR002740 EVE domain BER92_RS03510 fa73d33f092d4f964b5a29ed5643e397 156 PANTHER PTHR14087 1 156 9.9E-81 T 16-09-2016 BER92_RS03510 fa73d33f092d4f964b5a29ed5643e397 156 Pfam PF01878 EVE domain 6 155 6.8E-55 T 16-09-2016 IPR002740 EVE domain BER92_RS03510 fa73d33f092d4f964b5a29ed5643e397 156 SUPERFAMILY SSF88697 5 155 7.87E-60 T 16-09-2016 IPR015947 PUA-like domain BER92_RS09640 e2402f2378980c37521ea81cc5b42248 96 Gene3D G3DSA:2.40.50.140 1 77 1.4E-8 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS09640 e2402f2378980c37521ea81cc5b42248 96 SUPERFAMILY SSF50249 2 75 5.48E-6 T 16-09-2016 IPR012340 Nucleic acid-binding, OB-fold BER92_RS00035 068c542977514758b6219f12af63159f 268 PANTHER PTHR22726 2 266 1.6E-70 T 16-09-2016 BER92_RS00035 068c542977514758b6219f12af63159f 268 Gene3D G3DSA:3.30.2010.10 57 141 5.3E-17 T 16-09-2016 BER92_RS00035 068c542977514758b6219f12af63159f 268 Pfam PF01435 Peptidase family M48 61 246 3.4E-35 T 16-09-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BER92_RS16320 4a3a27ed5d3a3a42ac7433ed025d98e8 221 Gene3D G3DSA:1.20.1250.20 47 213 4.2E-11 T 16-09-2016 BER92_RS16320 4a3a27ed5d3a3a42ac7433ed025d98e8 221 Pfam PF07690 Major Facilitator Superfamily 49 210 3.0E-10 T 16-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BER92_RS16320 4a3a27ed5d3a3a42ac7433ed025d98e8 221 PANTHER PTHR23501 1 213 3.5E-82 T 16-09-2016 BER92_RS16320 4a3a27ed5d3a3a42ac7433ed025d98e8 221 SUPERFAMILY SSF103473 39 215 5.36E-19 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS16320 4a3a27ed5d3a3a42ac7433ed025d98e8 221 PANTHER PTHR23501:SF79 1 213 3.5E-82 T 16-09-2016 BER92_RS17615 8fb05cd3411a46cdde117d9ec3a9eda8 464 SUPERFAMILY SSF51445 103 396 1.38E-26 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS17615 8fb05cd3411a46cdde117d9ec3a9eda8 464 Pfam PF02638 Glycosyl hydrolase-like 10 75 410 9.0E-90 T 16-09-2016 IPR003790 Glycosyl hydrolase-like 10 BER92_RS17615 8fb05cd3411a46cdde117d9ec3a9eda8 464 PANTHER PTHR30032:SF2 283 451 1.5E-84 T 16-09-2016 BER92_RS17615 8fb05cd3411a46cdde117d9ec3a9eda8 464 PANTHER PTHR30032:SF2 68 263 1.5E-84 T 16-09-2016 BER92_RS17615 8fb05cd3411a46cdde117d9ec3a9eda8 464 PANTHER PTHR30032 283 451 1.5E-84 T 16-09-2016 BER92_RS17615 8fb05cd3411a46cdde117d9ec3a9eda8 464 PANTHER PTHR30032 68 263 1.5E-84 T 16-09-2016 BER92_RS17615 8fb05cd3411a46cdde117d9ec3a9eda8 464 Gene3D G3DSA:3.20.20.80 165 310 2.5E-5 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS07555 9a72dd5887db2c32c0af062d2fac9e9c 282 Gene3D G3DSA:1.10.3720.10 13 270 1.2E-53 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS07555 9a72dd5887db2c32c0af062d2fac9e9c 282 PANTHER PTHR30222:SF1 1 276 3.5E-88 T 16-09-2016 BER92_RS07555 9a72dd5887db2c32c0af062d2fac9e9c 282 PANTHER PTHR30222 1 276 3.5E-88 T 16-09-2016 BER92_RS07555 9a72dd5887db2c32c0af062d2fac9e9c 282 SUPERFAMILY SSF161098 9 267 4.39E-50 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS07555 9a72dd5887db2c32c0af062d2fac9e9c 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 270 1.5E-15 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS06295 00d73c2a841953967349afb3d720a846 1904 Gene3D G3DSA:1.25.10.10 234 359 2.5E-5 T 16-09-2016 IPR011989 Armadillo-like helical BER92_RS06295 00d73c2a841953967349afb3d720a846 1904 SUPERFAMILY SSF48371 261 597 4.22E-23 T 16-09-2016 IPR016024 Armadillo-type fold GO:0005488 BER92_RS06295 00d73c2a841953967349afb3d720a846 1904 SUPERFAMILY SSF48371 125 316 2.3E-11 T 16-09-2016 IPR016024 Armadillo-type fold GO:0005488 BER92_RS09055 0d78b188a22e2801cd855fcb165296bb 119 PANTHER PTHR24559 18 117 8.3E-50 T 16-09-2016 BER92_RS09055 0d78b188a22e2801cd855fcb165296bb 119 Pfam PF13276 HTH-like domain 36 89 1.5E-10 T 16-09-2016 IPR025948 HTH-like domain BER92_RS09055 0d78b188a22e2801cd855fcb165296bb 119 PANTHER PTHR24559:SF185 18 117 8.3E-50 T 16-09-2016 BER92_RS08850 f79cea853bb2c19d70b1047b7288ade5 143 PANTHER PTHR30009:SF6 27 141 8.6E-28 T 16-09-2016 BER92_RS08850 f79cea853bb2c19d70b1047b7288ade5 143 Pfam PF03918 Cytochrome C biogenesis protein 24 141 9.5E-49 T 16-09-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family BER92_RS08850 f79cea853bb2c19d70b1047b7288ade5 143 PANTHER PTHR30009 27 141 8.6E-28 T 16-09-2016 BER92_RS02280 7a9c57650f5af0a084abd95da9cb04e2 235 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 192 201 - T 16-09-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 BER92_RS02280 7a9c57650f5af0a084abd95da9cb04e2 235 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 1 235 6.1E-68 T 16-09-2016 IPR010239 Conserved hypothetical protein CHP02001 BER92_RS02280 7a9c57650f5af0a084abd95da9cb04e2 235 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 27 215 1.0E-25 T 16-09-2016 IPR010239 Conserved hypothetical protein CHP02001 BER92_RS11825 6170a59e66749967f1c9b6b68a3fb863 161 Pfam PF13195 Protein of unknown function (DUF4011) 29 161 2.7E-13 T 16-09-2016 IPR025103 Protein of unknown function DUF4011 BER92_RS15630 15e4b3de3eb83b9a76963f6c5d76f03a 316 SUPERFAMILY SSF53448 4 160 7.8E-28 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS15630 15e4b3de3eb83b9a76963f6c5d76f03a 316 PANTHER PTHR10859:SF49 4 301 1.6E-73 T 16-09-2016 BER92_RS15630 15e4b3de3eb83b9a76963f6c5d76f03a 316 Pfam PF00535 Glycosyl transferase family 2 6 132 3.8E-26 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS15630 15e4b3de3eb83b9a76963f6c5d76f03a 316 PANTHER PTHR10859 4 301 1.6E-73 T 16-09-2016 BER92_RS15630 15e4b3de3eb83b9a76963f6c5d76f03a 316 Gene3D G3DSA:3.90.550.10 4 125 1.6E-21 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS07825 1d213077daf67d0f948b118147437c68 361 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 56 280 5.8E-38 T 16-09-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 BER92_RS09155 fbe1fbbf7c4783dae5d3ea39545c0083 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS09155 fbe1fbbf7c4783dae5d3ea39545c0083 455 Pfam PF01609 Transposase DDE domain 284 421 1.3E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09155 fbe1fbbf7c4783dae5d3ea39545c0083 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS09155 fbe1fbbf7c4783dae5d3ea39545c0083 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS06670 60efb69f0690adf2fb5725393bba15b4 276 PANTHER PTHR10953 194 260 5.5E-74 T 16-09-2016 BER92_RS06670 60efb69f0690adf2fb5725393bba15b4 276 PANTHER PTHR10953 6 161 5.5E-74 T 16-09-2016 BER92_RS06670 60efb69f0690adf2fb5725393bba15b4 276 Pfam PF00899 ThiF family 20 165 2.1E-32 T 16-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BER92_RS06670 60efb69f0690adf2fb5725393bba15b4 276 PANTHER PTHR10953:SF159 6 161 5.5E-74 T 16-09-2016 BER92_RS06670 60efb69f0690adf2fb5725393bba15b4 276 Gene3D G3DSA:3.40.50.720 4 260 1.8E-42 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS06670 60efb69f0690adf2fb5725393bba15b4 276 SUPERFAMILY SSF69572 6 260 1.28E-53 T 16-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BER92_RS06670 60efb69f0690adf2fb5725393bba15b4 276 PANTHER PTHR10953:SF159 194 260 5.5E-74 T 16-09-2016 BER92_RS18615 805c1a97a951d343e053679eb3e59296 199 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 54 187 5.7E-38 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18615 805c1a97a951d343e053679eb3e59296 199 PANTHER PTHR10003 43 187 3.8E-40 T 16-09-2016 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone MetaCyc: PWY-6854 BER92_RS18615 805c1a97a951d343e053679eb3e59296 199 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 176 187 - T 16-09-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 BER92_RS18615 805c1a97a951d343e053679eb3e59296 199 Gene3D G3DSA:2.60.40.200 47 191 1.3E-47 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18615 805c1a97a951d343e053679eb3e59296 199 SUPERFAMILY SSF49329 45 187 1.31E-42 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18615 805c1a97a951d343e053679eb3e59296 199 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 162 188 8.9E-8 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18615 805c1a97a951d343e053679eb3e59296 199 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 122 131 8.9E-8 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18615 805c1a97a951d343e053679eb3e59296 199 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 85 107 8.9E-8 T 16-09-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 BER92_RS18615 805c1a97a951d343e053679eb3e59296 199 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 85 95 - T 16-09-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 BER92_RS18330 2bfae212229c0e71977c6032bde14ff1 380 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 10 380 41.098 T 16-09-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 BER92_RS18330 2bfae212229c0e71977c6032bde14ff1 380 PANTHER PTHR30605:SF0 4 379 5.4E-170 T 16-09-2016 BER92_RS18330 2bfae212229c0e71977c6032bde14ff1 380 SUPERFAMILY SSF53067 76 121 4.79E-23 T 16-09-2016 BER92_RS18330 2bfae212229c0e71977c6032bde14ff1 380 SUPERFAMILY SSF53067 153 353 4.79E-23 T 16-09-2016 BER92_RS18330 2bfae212229c0e71977c6032bde14ff1 380 SUPERFAMILY SSF53067 11 43 4.79E-23 T 16-09-2016 BER92_RS18330 2bfae212229c0e71977c6032bde14ff1 380 PANTHER PTHR30605 4 379 5.4E-170 T 16-09-2016 BER92_RS18330 2bfae212229c0e71977c6032bde14ff1 380 Pfam PF03702 Uncharacterised protein family (UPF0075) 11 380 7.9E-151 T 16-09-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 BER92_RS18330 2bfae212229c0e71977c6032bde14ff1 380 Gene3D G3DSA:3.30.420.40 11 206 3.6E-68 T 16-09-2016 BER92_RS04430 9b3bb4528c23cd188eab16565809635a 385 SUPERFAMILY SSF56112 20 339 8.75E-34 T 16-09-2016 IPR011009 Protein kinase-like domain BER92_RS04430 9b3bb4528c23cd188eab16565809635a 385 Gene3D G3DSA:3.90.1200.10 134 340 4.4E-24 T 16-09-2016 BER92_RS04430 9b3bb4528c23cd188eab16565809635a 385 Pfam PF01636 Phosphotransferase enzyme family 57 307 5.3E-22 T 16-09-2016 IPR002575 Aminoglycoside phosphotransferase BER92_RS14130 0bf718986a49a43364662b58c3631958 349 Gene3D G3DSA:3.40.50.2000 10 151 5.5E-21 T 16-09-2016 BER92_RS14130 0bf718986a49a43364662b58c3631958 349 SUPERFAMILY SSF53756 8 343 1.0E-74 T 16-09-2016 BER92_RS14130 0bf718986a49a43364662b58c3631958 349 Gene3D G3DSA:3.40.50.2000 163 343 3.4E-43 T 16-09-2016 BER92_RS14130 0bf718986a49a43364662b58c3631958 349 PANTHER PTHR30160:SF12 5 346 1.5E-148 T 16-09-2016 BER92_RS14130 0bf718986a49a43364662b58c3631958 349 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 71 300 4.6E-44 T 16-09-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 BER92_RS14130 0bf718986a49a43364662b58c3631958 349 PANTHER PTHR30160 5 346 1.5E-148 T 16-09-2016 BER92_RS07290 3b95b5b4023e73de93cb67e1e9c8d5b3 101 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 101 19.67 T 16-09-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 BER92_RS07290 3b95b5b4023e73de93cb67e1e9c8d5b3 101 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 96 7.9E-23 T 16-09-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 BER92_RS07290 3b95b5b4023e73de93cb67e1e9c8d5b3 101 PANTHER PTHR11434 3 101 6.8E-40 T 16-09-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 Gene3D G3DSA:3.30.460.10 113 284 2.9E-54 T 16-09-2016 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 Gene3D G3DSA:3.30.460.10 631 796 1.5E-53 T 16-09-2016 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 37 934 18.149 T 16-09-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 SUPERFAMILY SSF81301 520 796 1.39E-69 T 16-09-2016 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 PANTHER PTHR30621 1 924 0.0 T 16-09-2016 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 41 275 8.0E-58 T 16-09-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 546 789 6.9E-67 T 16-09-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 Pfam PF08335 GlnD PII-uridylyltransferase 810 893 2.5E-5 T 16-09-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 Pfam PF08335 GlnD PII-uridylyltransferase 296 434 1.8E-42 T 16-09-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 SUPERFAMILY SSF81593 800 894 5.41E-20 T 16-09-2016 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 SUPERFAMILY SSF81593 286 435 2.82E-40 T 16-09-2016 BER92_RS17455 99cecc6bbddfdccd91ada321dad73b69 938 SUPERFAMILY SSF81301 33 285 4.9E-65 T 16-09-2016 BER92_RS08840 3e497e3e9e6cb7596b61414933918d7a 408 PANTHER PTHR33803 1 408 3.9E-284 T 16-09-2016 BER92_RS08840 3e497e3e9e6cb7596b61414933918d7a 408 Pfam PF01609 Transposase DDE domain 237 374 1.7E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS08840 3e497e3e9e6cb7596b61414933918d7a 408 Pfam PF05598 Transposase domain (DUF772) 44 118 7.4E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS08840 3e497e3e9e6cb7596b61414933918d7a 408 PANTHER PTHR33803:SF1 1 408 3.9E-284 T 16-09-2016 BER92_RS06820 9b3f96112654edfa64b6364a84618c0f 156 Pfam PF01609 Transposase DDE domain 1 153 5.3E-25 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS06820 9b3f96112654edfa64b6364a84618c0f 156 PANTHER PTHR30007:SF0 1 155 3.2E-29 T 16-09-2016 BER92_RS06820 9b3f96112654edfa64b6364a84618c0f 156 PANTHER PTHR30007 1 155 3.2E-29 T 16-09-2016 BER92_RS01160 c4f7f62ea54e44bc8da4884f10214804 105 PANTHER PTHR38598 5 105 1.4E-47 T 16-09-2016 BER92_RS01160 c4f7f62ea54e44bc8da4884f10214804 105 Pfam PF04341 Protein of unknown function, DUF485 14 101 4.6E-33 T 16-09-2016 IPR007436 Protein of unknown function DUF485 BER92_RS14875 764ff71e992f2ed8ca86a320691a2fee 142 PANTHER PTHR36302 22 139 2.9E-19 T 16-09-2016 BER92_RS14875 764ff71e992f2ed8ca86a320691a2fee 142 SUPERFAMILY SSF110087 5 140 3.66E-34 T 16-09-2016 IPR007410 DR1885-like metal-binding protein BER92_RS14875 764ff71e992f2ed8ca86a320691a2fee 142 Pfam PF04314 Protein of unknown function (DUF461) 23 130 1.6E-28 T 16-09-2016 IPR007410 DR1885-like metal-binding protein BER92_RS14875 764ff71e992f2ed8ca86a320691a2fee 142 PANTHER PTHR36302:SF1 22 139 2.9E-19 T 16-09-2016 BER92_RS00060 24af52fcb0f59f4685618b2af0d1b445 136 PANTHER PTHR30558 8 135 1.9E-34 T 16-09-2016 BER92_RS00060 24af52fcb0f59f4685618b2af0d1b445 136 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 135 1.2E-25 T 16-09-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 BER92_RS00060 24af52fcb0f59f4685618b2af0d1b445 136 PANTHER PTHR30558:SF3 8 135 1.9E-34 T 16-09-2016 BER92_RS09305 7f5fac5434194b1bb241ca05d7166b1a 619 Pfam PF13387 Domain of unknown function (DUF4105) 234 386 4.9E-29 T 16-09-2016 IPR025178 Domain of unknown function DUF4105 BER92_RS12225 1362f4d3d29cdd0fb73f6ac4c29543de 332 PANTHER PTHR11351:SF34 1 329 3.6E-146 T 16-09-2016 BER92_RS12225 1362f4d3d29cdd0fb73f6ac4c29543de 332 Pfam PF00487 Fatty acid desaturase 75 304 2.7E-25 T 16-09-2016 IPR005804 Fatty acid desaturase domain GO:0006629 BER92_RS12225 1362f4d3d29cdd0fb73f6ac4c29543de 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 231 252 4.5E-18 T 16-09-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 BER92_RS12225 1362f4d3d29cdd0fb73f6ac4c29543de 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 274 288 4.5E-18 T 16-09-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 BER92_RS12225 1362f4d3d29cdd0fb73f6ac4c29543de 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 135 164 4.5E-18 T 16-09-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 BER92_RS12225 1362f4d3d29cdd0fb73f6ac4c29543de 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 53 73 4.5E-18 T 16-09-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 BER92_RS12225 1362f4d3d29cdd0fb73f6ac4c29543de 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 98 118 4.5E-18 T 16-09-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 BER92_RS12225 1362f4d3d29cdd0fb73f6ac4c29543de 332 PANTHER PTHR11351 1 329 3.6E-146 T 16-09-2016 BER92_RS11385 99c341421c8574cfdc16db9d30e09fee 83 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 28 78 1.5E-18 T 16-09-2016 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 BER92_RS13695 86a4e0aeeb8497debae8c54d118bf96e 130 Pfam PF03610 PTS system fructose IIA component 4 103 9.9E-12 T 16-09-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 BER92_RS13695 86a4e0aeeb8497debae8c54d118bf96e 130 PANTHER PTHR33799 3 130 8.4E-35 T 16-09-2016 BER92_RS13695 86a4e0aeeb8497debae8c54d118bf96e 130 SUPERFAMILY SSF53062 4 124 8.63E-23 T 16-09-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 BER92_RS13695 86a4e0aeeb8497debae8c54d118bf96e 130 Gene3D G3DSA:3.40.50.510 4 124 6.9E-26 T 16-09-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 BER92_RS00030 72d9c585e5aefe49083ce87e9bcf6aa1 278 PANTHER PTHR36435:SF1 17 277 1.8E-35 T 16-09-2016 BER92_RS00030 72d9c585e5aefe49083ce87e9bcf6aa1 278 Pfam PF02517 CAAX protease self-immunity 167 266 2.5E-20 T 16-09-2016 IPR003675 CAAX amino terminal protease GO:0016020 BER92_RS00030 72d9c585e5aefe49083ce87e9bcf6aa1 278 PANTHER PTHR36435 17 277 1.8E-35 T 16-09-2016 BER92_RS14430 42155e6bf2520e2f5d0f8efdf7eea527 172 PANTHER PTHR30128 1 172 1.4E-79 T 16-09-2016 BER92_RS14430 42155e6bf2520e2f5d0f8efdf7eea527 172 PANTHER PTHR30128:SF18 1 172 1.4E-79 T 16-09-2016 BER92_RS14430 42155e6bf2520e2f5d0f8efdf7eea527 172 PRINTS PR01021 OMPA domain signature 99 114 6.6E-13 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS14430 42155e6bf2520e2f5d0f8efdf7eea527 172 PRINTS PR01021 OMPA domain signature 69 91 6.6E-13 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS14430 42155e6bf2520e2f5d0f8efdf7eea527 172 PRINTS PR01021 OMPA domain signature 114 130 6.6E-13 T 16-09-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BER92_RS14430 42155e6bf2520e2f5d0f8efdf7eea527 172 Pfam PF00691 OmpA family 68 163 1.8E-16 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS14430 42155e6bf2520e2f5d0f8efdf7eea527 172 SUPERFAMILY SSF103088 65 169 9.81E-32 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS14430 42155e6bf2520e2f5d0f8efdf7eea527 172 Gene3D G3DSA:3.30.1330.60 66 170 2.8E-31 T 16-09-2016 IPR006665 OmpA-like domain BER92_RS14430 42155e6bf2520e2f5d0f8efdf7eea527 172 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 67 169 2.7E-42 T 16-09-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 BER92_RS01470 88273a42de19b646eeaa010876ef6306 198 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 11 83 3.2E-21 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS01470 88273a42de19b646eeaa010876ef6306 198 Pfam PF01609 Transposase DDE domain 100 189 2.0E-12 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS01470 88273a42de19b646eeaa010876ef6306 198 PANTHER PTHR30007:SF17 7 187 2.6E-97 T 16-09-2016 BER92_RS01470 88273a42de19b646eeaa010876ef6306 198 PANTHER PTHR30007 7 187 2.6E-97 T 16-09-2016 BER92_RS05945 f001debe300d2eae781c6ad44535070d 491 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 424 3.9E-72 T 16-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 BER92_RS05945 f001debe300d2eae781c6ad44535070d 491 Pfam PF01554 MatE 22 183 1.8E-31 T 16-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 BER92_RS05945 f001debe300d2eae781c6ad44535070d 491 Pfam PF01554 MatE 251 411 3.7E-25 T 16-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 BER92_RS05945 f001debe300d2eae781c6ad44535070d 491 PANTHER PTHR11206:SF107 1 472 1.9E-178 T 16-09-2016 BER92_RS05945 f001debe300d2eae781c6ad44535070d 491 PANTHER PTHR11206 1 472 1.9E-178 T 16-09-2016 BER92_RS05945 f001debe300d2eae781c6ad44535070d 491 PIRSF PIRSF006603 1 458 1.1E-112 T 16-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 Pfam PF00557 Metallopeptidase family M24 12 242 9.0E-53 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 250 1.5E-98 T 16-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 PANTHER PTHR10804:SF75 1 249 4.3E-147 T 16-09-2016 BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 PANTHER PTHR10804 1 249 4.3E-147 T 16-09-2016 BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 41.406 T 16-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 Gene3D G3DSA:3.90.230.10 5 254 2.3E-100 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 4.7E-23 T 16-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 4.7E-23 T 16-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 4.7E-23 T 16-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 4.7E-23 T 16-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 16-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 BER92_RS06475 791748e2365eab05a30b0cdb2fe150e0 258 SUPERFAMILY SSF55920 5 253 3.53E-93 T 16-09-2016 IPR000994 Peptidase M24, structural domain BER92_RS12905 0cfcb04d92e1807ac6c18f820ca1bab9 151 Pfam PF09613 Bacterial type III secretion protein (HrpB1_HrpK) 1 124 5.7E-45 T 16-09-2016 IPR013394 Type III secretion system, HrpB1/HrpK BER92_RS12905 0cfcb04d92e1807ac6c18f820ca1bab9 151 TIGRFAM TIGR02561 HrpB1_HrpK: type III secretion protein HrpB1/HrpK 2 145 7.0E-51 T 16-09-2016 IPR013394 Type III secretion system, HrpB1/HrpK BER92_RS09270 19157bad32c41ed84feae5a392f0a684 217 PANTHER PTHR10640 19 213 1.0E-58 T 16-09-2016 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00904 BER92_RS09270 19157bad32c41ed84feae5a392f0a684 217 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 216 107.44 T 16-09-2016 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00904 BER92_RS09270 19157bad32c41ed84feae5a392f0a684 217 Gene3D G3DSA:3.40.225.10 17 213 1.3E-43 T 16-09-2016 IPR001303 Class II aldolase/adducin N-terminal BER92_RS09270 19157bad32c41ed84feae5a392f0a684 217 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 22 206 3.0E-39 T 16-09-2016 IPR001303 Class II aldolase/adducin N-terminal BER92_RS09270 19157bad32c41ed84feae5a392f0a684 217 SUPERFAMILY SSF53639 16 213 2.94E-43 T 16-09-2016 IPR001303 Class II aldolase/adducin N-terminal BER92_RS09270 19157bad32c41ed84feae5a392f0a684 217 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 22 212 5.7E-73 T 16-09-2016 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00904 BER92_RS09270 19157bad32c41ed84feae5a392f0a684 217 SMART SM01007 20 208 1.0E-50 T 16-09-2016 IPR001303 Class II aldolase/adducin N-terminal BER92_RS12120 09882cc8d9da85215c5efb76d766f2c6 166 SUPERFAMILY SSF52540 27 150 6.04E-16 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12120 09882cc8d9da85215c5efb76d766f2c6 166 PANTHER PTHR33540 1 156 5.8E-40 T 16-09-2016 BER92_RS12120 09882cc8d9da85215c5efb76d766f2c6 166 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 9 138 6.8E-32 T 16-09-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 BER92_RS12120 09882cc8d9da85215c5efb76d766f2c6 166 Gene3D G3DSA:3.40.50.300 4 150 7.1E-40 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS12120 09882cc8d9da85215c5efb76d766f2c6 166 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 10 130 8.1E-31 T 16-09-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 BER92_RS07800 9662a8a316cf80f6db21460357d76b62 208 Gene3D G3DSA:2.130.10.130 79 133 3.9E-5 T 16-09-2016 BER92_RS07800 9662a8a316cf80f6db21460357d76b62 208 SUPERFAMILY SSF69318 81 129 7.32E-6 T 16-09-2016 BER92_RS14045 9924f482f871b839b94bb13e42551656 613 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 51 211 5.8E-15 T 16-09-2016 BER92_RS14045 9924f482f871b839b94bb13e42551656 613 PANTHER PTHR33908:SF1 1 610 5.2E-274 T 16-09-2016 BER92_RS14045 9924f482f871b839b94bb13e42551656 613 PANTHER PTHR33908 1 610 5.2E-274 T 16-09-2016 BER92_RS13660 a52c8fc8c0600606636104f2bf9a2555 183 PANTHER PTHR36504 1 176 2.9E-49 T 16-09-2016 BER92_RS13660 a52c8fc8c0600606636104f2bf9a2555 183 Gene3D G3DSA:2.60.450.10 20 155 5.6E-30 T 16-09-2016 BER92_RS13660 a52c8fc8c0600606636104f2bf9a2555 183 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 19 158 2.6E-40 T 16-09-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 BER92_RS13660 a52c8fc8c0600606636104f2bf9a2555 183 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 1 158 23.252 T 16-09-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 BER92_RS13660 a52c8fc8c0600606636104f2bf9a2555 183 Pfam PF03968 OstA-like protein 31 140 3.3E-25 T 16-09-2016 IPR005653 Organic solvent tolerance-like, N-terminal BER92_RS09865 bcb5234d4d000e51f5ce33615cb37760 162 SUPERFAMILY SSF48452 3 70 3.23E-9 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS09865 bcb5234d4d000e51f5ce33615cb37760 162 Gene3D G3DSA:1.25.40.10 3 67 8.1E-8 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS16670 39dab2534c2724e1990a645752dc4a72 345 Pfam PF09615 CRISPR-associated protein (Cas_Csy3) 7 342 2.9E-147 T 16-09-2016 IPR013399 CRISPR-associated protein Csy3 BER92_RS16670 39dab2534c2724e1990a645752dc4a72 345 TIGRFAM TIGR02566 cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3 6 345 3.7E-135 T 16-09-2016 IPR013399 CRISPR-associated protein Csy3 BER92_RS16855 f8feab1a8849b36a5d0de91185b47ae5 279 SMART SM01126 142 279 5.9E-5 T 16-09-2016 IPR024445 ISXO2-like transposase domain BER92_RS16855 f8feab1a8849b36a5d0de91185b47ae5 279 Pfam PF12762 ISXO2-like transposase domain 142 277 1.1E-17 T 16-09-2016 IPR024445 ISXO2-like transposase domain BER92_RS16855 f8feab1a8849b36a5d0de91185b47ae5 279 Pfam PF12760 Transposase zinc-ribbon domain 27 73 2.5E-10 T 16-09-2016 IPR024442 Transposase, zinc-ribbon BER92_RS12460 bd7778e0e133e8c043d8d7207d13181c 163 Pfam PF03061 Thioesterase superfamily 22 95 5.0E-19 T 16-09-2016 IPR006683 Thioesterase domain BER92_RS12460 bd7778e0e133e8c043d8d7207d13181c 163 PANTHER PTHR11049 5 158 6.0E-54 T 16-09-2016 BER92_RS12460 bd7778e0e133e8c043d8d7207d13181c 163 Gene3D G3DSA:3.10.129.10 5 140 5.9E-41 T 16-09-2016 IPR029069 HotDog domain BER92_RS12460 bd7778e0e133e8c043d8d7207d13181c 163 SUPERFAMILY SSF54637 8 156 1.06E-40 T 16-09-2016 IPR029069 HotDog domain BER92_RS07070 f907531abd307c1f419384f392e595f7 185 Pfam PF04519 Polymer-forming cytoskeletal 63 158 2.4E-22 T 16-09-2016 IPR007607 Protein of unknown function DUF583 BER92_RS07070 f907531abd307c1f419384f392e595f7 185 PANTHER PTHR35024 1 177 2.9E-58 T 16-09-2016 BER92_RS07070 f907531abd307c1f419384f392e595f7 185 PANTHER PTHR35024:SF2 1 177 2.9E-58 T 16-09-2016 BER92_RS10945 d9004331514f7da52a8474674968ad77 292 Pfam PF05035 2-keto-3-deoxy-galactonokinase 5 284 2.1E-96 T 16-09-2016 IPR007729 2-keto-3-deoxy-galactonokinase GO:0008671|GO:0034194 KEGG: 00052+2.7.1.58|MetaCyc: PWY-7130|UniPathway: UPA00081 BER92_RS01985 c5208592892ab5178ebc4db5038ea22a 440 Gene3D G3DSA:2.160.20.10 16 439 4.3E-67 T 16-09-2016 IPR012334 Pectin lyase fold BER92_RS01985 c5208592892ab5178ebc4db5038ea22a 440 Pfam PF16380 Domain of unknown function 364 420 1.3E-8 T 16-09-2016 IPR032153 Domain of unknown function DUF4990 BER92_RS01985 c5208592892ab5178ebc4db5038ea22a 440 SUPERFAMILY SSF51126 15 439 1.76E-56 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS01985 c5208592892ab5178ebc4db5038ea22a 440 Pfam PF13229 Right handed beta helix region 133 306 6.0E-7 T 16-09-2016 BER92_RS12875 bf75641ab909876c3223bab78d80ce5c 169 TIGRFAM TIGR02559 HrpB7: type III secretion protein HrpB7 3 160 1.5E-48 T 16-09-2016 IPR013392 Type III secretion protein HrpB7 BER92_RS12875 bf75641ab909876c3223bab78d80ce5c 169 Pfam PF09486 Bacterial type III secretion protein (HrpB7) 3 159 2.8E-39 T 16-09-2016 IPR013392 Type III secretion protein HrpB7 BER92_RS18210 6011c7aeba1c78226a375d4ab0927e55 391 PANTHER PTHR19328 30 373 5.8E-76 T 16-09-2016 BER92_RS18210 6011c7aeba1c78226a375d4ab0927e55 391 Pfam PF07995 Glucose / Sorbosone dehydrogenase 48 373 1.1E-125 T 16-09-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 BER92_RS18210 6011c7aeba1c78226a375d4ab0927e55 391 Gene3D G3DSA:2.120.10.30 26 387 2.6E-99 T 16-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like BER92_RS18210 6011c7aeba1c78226a375d4ab0927e55 391 SUPERFAMILY SSF50952 30 372 6.93E-39 T 16-09-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 BER92_RS01040 76bd6cfe27a820f5ee1d24d0318f674e 90 PANTHER PTHR33803:SF1 32 90 9.0E-27 T 16-09-2016 BER92_RS01040 76bd6cfe27a820f5ee1d24d0318f674e 90 PANTHER PTHR33803 32 90 9.0E-27 T 16-09-2016 BER92_RS14205 6f8fb3db65d72b23ae00b0f417dc36d2 155 PANTHER PTHR30007:SF0 1 128 2.2E-23 T 16-09-2016 BER92_RS14205 6f8fb3db65d72b23ae00b0f417dc36d2 155 Pfam PF01609 Transposase DDE domain 3 124 4.6E-13 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14205 6f8fb3db65d72b23ae00b0f417dc36d2 155 PANTHER PTHR30007 1 128 2.2E-23 T 16-09-2016 BER92_RS04585 4d47baa2fbe1ed3364434d84e1c0fcbc 366 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 180 1.5E-27 T 16-09-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase BER92_RS04585 4d47baa2fbe1ed3364434d84e1c0fcbc 366 PANTHER PTHR40031 2 329 5.5E-113 T 16-09-2016 BER92_RS04585 4d47baa2fbe1ed3364434d84e1c0fcbc 366 PANTHER PTHR40031:SF1 2 329 5.5E-113 T 16-09-2016 BER92_RS14890 f64101e0111fd6dce1e411e753430e20 170 Pfam PF09413 Putative prokaryotic signal transducing protein 1 75 7.3E-6 T 16-09-2016 IPR018551 Domain of unknown function DUF2007 BER92_RS00125 1c0438f011189be713cb0963ae774195 411 Pfam PF01551 Peptidase family M23 311 404 3.7E-27 T 16-09-2016 IPR016047 Peptidase M23 BER92_RS00125 1c0438f011189be713cb0963ae774195 411 Gene3D G3DSA:2.70.70.10 270 409 5.6E-37 T 16-09-2016 BER92_RS00125 1c0438f011189be713cb0963ae774195 411 PANTHER PTHR21666 33 411 5.1E-96 T 16-09-2016 BER92_RS00125 1c0438f011189be713cb0963ae774195 411 PANTHER PTHR21666:SF108 33 411 5.1E-96 T 16-09-2016 BER92_RS00125 1c0438f011189be713cb0963ae774195 411 SUPERFAMILY SSF51261 199 408 3.45E-44 T 16-09-2016 IPR011055 Duplicated hybrid motif BER92_RS07745 dc3aec746d2dfa2ab2f610397227a6c6 817 SMART SM00382 437 702 0.004 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS07745 dc3aec746d2dfa2ab2f610397227a6c6 817 SUPERFAMILY SSF52540 385 721 9.11E-36 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07745 dc3aec746d2dfa2ab2f610397227a6c6 817 Gene3D G3DSA:3.40.50.300 604 719 1.1E-10 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07745 dc3aec746d2dfa2ab2f610397227a6c6 817 Gene3D G3DSA:3.40.50.300 437 512 1.1E-10 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07745 dc3aec746d2dfa2ab2f610397227a6c6 817 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 6 799 1.3E-219 T 16-09-2016 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 BER92_RS07745 dc3aec746d2dfa2ab2f610397227a6c6 817 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 171 376 5.2E-49 T 16-09-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 BER92_RS13085 cd9cd44f79ece63038520985ac262faf 80 Gene3D G3DSA:3.10.290.10 1 70 3.7E-25 T 16-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 BER92_RS13085 cd9cd44f79ece63038520985ac262faf 80 SUPERFAMILY SSF55174 2 69 1.71E-16 T 16-09-2016 BER92_RS13085 cd9cd44f79ece63038520985ac262faf 80 PANTHER PTHR32319 7 80 6.8E-20 T 16-09-2016 BER92_RS13085 cd9cd44f79ece63038520985ac262faf 80 Pfam PF13275 S4 domain 7 69 2.2E-22 T 16-09-2016 BER92_RS13085 cd9cd44f79ece63038520985ac262faf 80 PANTHER PTHR32319:SF3 7 80 6.8E-20 T 16-09-2016 BER92_RS07870 911373a5874caa3c7a77a939f1322726 445 SUPERFAMILY SSF56349 70 126 4.41E-34 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS07870 911373a5874caa3c7a77a939f1322726 445 SUPERFAMILY SSF56349 157 383 4.41E-34 T 16-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BER92_RS07870 911373a5874caa3c7a77a939f1322726 445 Gene3D G3DSA:1.10.443.10 216 382 1.4E-19 T 16-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS07870 911373a5874caa3c7a77a939f1322726 445 PANTHER PTHR30349:SF20 157 381 3.7E-18 T 16-09-2016 BER92_RS07870 911373a5874caa3c7a77a939f1322726 445 PANTHER PTHR30349:SF20 70 128 3.7E-18 T 16-09-2016 BER92_RS07870 911373a5874caa3c7a77a939f1322726 445 PANTHER PTHR30349 157 381 3.7E-18 T 16-09-2016 BER92_RS07870 911373a5874caa3c7a77a939f1322726 445 PANTHER PTHR30349 70 128 3.7E-18 T 16-09-2016 BER92_RS07870 911373a5874caa3c7a77a939f1322726 445 Pfam PF00589 Phage integrase family 236 382 5.7E-13 T 16-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BER92_RS04000 d1ce409e05e86fd18f06036f56574454 811 Gene3D G3DSA:2.40.170.20 173 811 9.9E-82 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS04000 d1ce409e05e86fd18f06036f56574454 811 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 171 4.2E-22 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS04000 d1ce409e05e86fd18f06036f56574454 811 PANTHER PTHR30069:SF4 9 811 6.5E-98 T 16-09-2016 BER92_RS04000 d1ce409e05e86fd18f06036f56574454 811 Gene3D G3DSA:2.170.130.10 48 172 4.4E-31 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS04000 d1ce409e05e86fd18f06036f56574454 811 PANTHER PTHR30069 9 811 6.5E-98 T 16-09-2016 BER92_RS04000 d1ce409e05e86fd18f06036f56574454 811 Pfam PF00593 TonB dependent receptor 498 780 9.3E-25 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS04000 d1ce409e05e86fd18f06036f56574454 811 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 41 - T 16-09-2016 IPR010916 TonB box, conserved site BER92_RS04000 d1ce409e05e86fd18f06036f56574454 811 SUPERFAMILY SSF56935 34 808 2.2E-102 T 16-09-2016 BER92_RS04140 d397bd4705cbea17dda16fe9d1e88621 177 SUPERFAMILY SSF48452 68 163 1.98E-8 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS04140 d397bd4705cbea17dda16fe9d1e88621 177 Gene3D G3DSA:1.25.40.10 64 161 7.0E-7 T 16-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 BER92_RS14935 8f002482095e130d5df6043768f6de72 87 Gene3D G3DSA:1.10.10.60 7 83 6.0E-8 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS14935 8f002482095e130d5df6043768f6de72 87 SUPERFAMILY SSF46689 2 82 4.3E-10 T 16-09-2016 IPR009057 Homeodomain-like GO:0003677 BER92_RS14935 8f002482095e130d5df6043768f6de72 87 PANTHER PTHR33609 1 87 1.4E-41 T 16-09-2016 BER92_RS14935 8f002482095e130d5df6043768f6de72 87 Pfam PF01527 Transposase 2 70 1.2E-19 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS10320 c715161e935e9637ff92a82dd05e7279 188 Pfam PF16823 Atypical PilZ domain, cyclic di-GMP receptor 46 186 3.8E-47 T 16-09-2016 IPR031800 Cyclic di-GMP receptor, atypical PilZ domain BER92_RS16420 993be9a5442fa5e8c7662b11a682c898 94 PANTHER PTHR14194:SF73 4 94 9.0E-23 T 16-09-2016 BER92_RS16420 993be9a5442fa5e8c7662b11a682c898 94 SUPERFAMILY SSF51735 5 93 2.32E-11 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS16420 993be9a5442fa5e8c7662b11a682c898 94 Pfam PF13460 NAD(P)H-binding 5 90 1.2E-7 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS16420 993be9a5442fa5e8c7662b11a682c898 94 Gene3D G3DSA:3.40.50.720 5 93 2.9E-11 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS16420 993be9a5442fa5e8c7662b11a682c898 94 PANTHER PTHR14194 4 94 9.0E-23 T 16-09-2016 BER92_RS06040 2be72f1ccd7ca6b7131eef6ddca6de85 232 Pfam PF10531 SLBB domain 127 179 3.0E-9 T 16-09-2016 IPR019554 Soluble ligand binding domain BER92_RS06040 2be72f1ccd7ca6b7131eef6ddca6de85 232 PANTHER PTHR33619 34 231 1.4E-68 T 16-09-2016 BER92_RS06040 2be72f1ccd7ca6b7131eef6ddca6de85 232 Gene3D G3DSA:3.10.560.10 116 206 1.8E-17 T 16-09-2016 BER92_RS06040 2be72f1ccd7ca6b7131eef6ddca6de85 232 PANTHER PTHR33619:SF2 34 231 1.4E-68 T 16-09-2016 BER92_RS06040 2be72f1ccd7ca6b7131eef6ddca6de85 232 Gene3D G3DSA:3.30.1950.10 54 115 6.5E-15 T 16-09-2016 BER92_RS06040 2be72f1ccd7ca6b7131eef6ddca6de85 232 Pfam PF02563 Polysaccharide biosynthesis/export protein 45 120 9.1E-19 T 16-09-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 BER92_RS12795 63b274a897d9541e2ed639277508a87f 371 SUPERFAMILY SSF46565 203 249 9.55E-6 T 16-09-2016 IPR001623 DnaJ domain BER92_RS12795 63b274a897d9541e2ed639277508a87f 371 Gene3D G3DSA:1.10.287.110 185 249 2.1E-5 T 16-09-2016 IPR001623 DnaJ domain BER92_RS16340 2e26707e9292134785c2f6069d47bd2b 114 Pfam PF04505 Interferon-induced transmembrane protein 20 90 9.4E-21 T 16-09-2016 IPR007593 CD225/Dispanin family GO:0009607|GO:0016021 BER92_RS16340 2e26707e9292134785c2f6069d47bd2b 114 PANTHER PTHR14948 5 113 4.5E-21 T 16-09-2016 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 PANTHER PTHR30070:SF1 11 231 8.2E-61 T 16-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 PANTHER PTHR30070 11 231 8.2E-61 T 16-09-2016 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 17 227 1.3E-58 T 16-09-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 112 130 5.9E-49 T 16-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 87 110 5.9E-49 T 16-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 64 81 5.9E-49 T 16-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 167 186 5.9E-49 T 16-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 204 227 5.9E-49 T 16-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 38 59 5.9E-49 T 16-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 Pfam PF03379 CcmB protein 15 228 2.8E-62 T 16-09-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BER92_RS08880 7ce2ac7a4a6216b4446cc42c89d8fec5 231 PIRSF PIRSF002764 7 231 3.6E-77 T 16-09-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria BER92_RS04730 2b4804895e8456fac6377a0e9e9180ab 127 PANTHER PTHR14289 8 124 4.7E-52 T 16-09-2016 BER92_RS04730 2b4804895e8456fac6377a0e9e9180ab 127 Gene3D G3DSA:2.60.40.1470 8 127 4.6E-45 T 16-09-2016 IPR007474 ApaG domain BER92_RS04730 2b4804895e8456fac6377a0e9e9180ab 127 Hamap MF_00791 Protein ApaG [apaG]. 2 127 32.95 T 16-09-2016 IPR023065 Uncharacterised protein family ApaG BER92_RS04730 2b4804895e8456fac6377a0e9e9180ab 127 SUPERFAMILY SSF110069 8 127 4.32E-46 T 16-09-2016 IPR007474 ApaG domain BER92_RS04730 2b4804895e8456fac6377a0e9e9180ab 127 Pfam PF04379 Protein of unknown function (DUF525) 20 104 2.7E-34 T 16-09-2016 IPR007474 ApaG domain BER92_RS11150 25eb79907f58b13556506a77490db2d8 191 SUPERFAMILY SSF56935 45 186 3.85E-31 T 16-09-2016 BER92_RS11150 25eb79907f58b13556506a77490db2d8 191 PANTHER PTHR32552:SF33 1 185 2.3E-68 T 16-09-2016 BER92_RS11150 25eb79907f58b13556506a77490db2d8 191 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 162 5.2E-16 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS11150 25eb79907f58b13556506a77490db2d8 191 Gene3D G3DSA:2.170.130.10 35 172 1.4E-29 T 16-09-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 BER92_RS11150 25eb79907f58b13556506a77490db2d8 191 PANTHER PTHR32552 1 185 2.3E-68 T 16-09-2016 BER92_RS03980 6b74b31d16c09fc6cbc8132021e943fb 59 PANTHER PTHR33803 1 59 1.1E-35 T 16-09-2016 BER92_RS03980 6b74b31d16c09fc6cbc8132021e943fb 59 PANTHER PTHR33803:SF1 1 59 1.1E-35 T 16-09-2016 BER92_RS04675 e338d5c3da41d88a26faccd40dbcdaf3 81 Gene3D G3DSA:2.10.70.10 41 81 4.0E-19 T 16-09-2016 BER92_RS04675 e338d5c3da41d88a26faccd40dbcdaf3 81 Pfam PF10636 Hemin uptake protein hemP 46 81 1.8E-17 T 16-09-2016 IPR019600 Hemin uptake protein HemP BER92_RS14660 85644f41f23fce8dd51108226d7d2ea4 257 PANTHER PTHR31088 2 257 5.8E-75 T 16-09-2016 BER92_RS14660 85644f41f23fce8dd51108226d7d2ea4 257 Pfam PF04012 PspA/IM30 family 2 227 6.7E-39 T 16-09-2016 IPR007157 PspA/IM30 BER92_RS14660 85644f41f23fce8dd51108226d7d2ea4 257 PANTHER PTHR31088:SF0 2 257 5.8E-75 T 16-09-2016 BER92_RS05900 6c0739d7d806dbacf65b6494b4db3b6e 263 PANTHER PTHR38034 1 261 3.1E-92 T 16-09-2016 BER92_RS05900 6c0739d7d806dbacf65b6494b4db3b6e 263 Pfam PF01578 Cytochrome C assembly protein 43 258 1.0E-33 T 16-09-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BER92_RS12100 8b4d179f9a7a818822124f5fea179233 321 PANTHER PTHR40590 21 321 1.1E-91 T 16-09-2016 BER92_RS12100 8b4d179f9a7a818822124f5fea179233 321 Pfam PF01963 TraB family 47 310 3.3E-77 T 16-09-2016 IPR002816 Pheromone shutdown, TraB BER92_RS04420 e5bb14f65cace960448e36011ffd177b 196 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 2 188 3.4E-25 T 16-09-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 BER92_RS04420 e5bb14f65cace960448e36011ffd177b 196 PANTHER PTHR36122:SF1 1 196 4.4E-77 T 16-09-2016 BER92_RS04420 e5bb14f65cace960448e36011ffd177b 196 Pfam PF04973 Nicotinamide mononucleotide transporter 2 185 2.5E-48 T 16-09-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 BER92_RS04420 e5bb14f65cace960448e36011ffd177b 196 PANTHER PTHR36122 1 196 4.4E-77 T 16-09-2016 BER92_RS11355 2495307b2a04bf1c5b8575c5d7b7cec0 86 Pfam PF05488 PAAR motif 8 78 4.8E-25 T 16-09-2016 IPR008727 PAAR motif BER92_RS13315 eb1c1bb6b8d9baa9b36d071d17fb6ffb 74 PANTHER PTHR38453 2 74 4.6E-44 T 16-09-2016 BER92_RS13315 eb1c1bb6b8d9baa9b36d071d17fb6ffb 74 Pfam PF04328 Protein of unknown function (DUF466) 15 74 7.0E-26 T 16-09-2016 IPR007423 Protein of unknown function DUF466 BER92_RS13315 eb1c1bb6b8d9baa9b36d071d17fb6ffb 74 PANTHER PTHR38453:SF1 2 74 4.6E-44 T 16-09-2016 BER92_RS07125 3b306bf88dbd6833c22525ee9fbf7353 501 PANTHER PTHR30121:SF3 1 442 3.2E-179 T 16-09-2016 BER92_RS07125 3b306bf88dbd6833c22525ee9fbf7353 501 PANTHER PTHR30121 1 442 3.2E-179 T 16-09-2016 BER92_RS07125 3b306bf88dbd6833c22525ee9fbf7353 501 Gene3D G3DSA:3.40.50.300 5 109 3.0E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07125 3b306bf88dbd6833c22525ee9fbf7353 501 Gene3D G3DSA:3.40.50.300 205 378 3.0E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS07125 3b306bf88dbd6833c22525ee9fbf7353 501 Pfam PF05872 Bacterial protein of unknown function (DUF853) 14 501 7.5E-212 T 16-09-2016 IPR033186 Helicase HerA-like C-terminal BER92_RS07125 3b306bf88dbd6833c22525ee9fbf7353 501 SUPERFAMILY SSF52540 4 384 9.01E-54 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09655 18165d0a6273440ac5b90a237d4d9efd 96 Pfam PF10734 Protein of unknown function (DUF2523) 12 82 7.4E-6 T 16-09-2016 IPR019670 Protein of unkown function DUF2523 BER92_RS09570 3310660c910ddf38cabd747ae5325ca3 246 PANTHER PTHR30433:SF3 2 245 6.5E-99 T 16-09-2016 IPR022522 Flagellar motor stator, MotA BER92_RS09570 3310660c910ddf38cabd747ae5325ca3 246 Pfam PF01618 MotA/TolQ/ExbB proton channel family 103 219 3.6E-24 T 16-09-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 BER92_RS09570 3310660c910ddf38cabd747ae5325ca3 246 PANTHER PTHR30433 2 245 6.5E-99 T 16-09-2016 BER92_RS08720 0e4d8c15d03cd28876e6233aa8b008cc 501 ProSitePatterns PS00131 Serine carboxypeptidases, serine active site. 206 213 - T 16-09-2016 IPR018202 Serine carboxypeptidase, serine active site BER92_RS08720 0e4d8c15d03cd28876e6233aa8b008cc 501 PANTHER PTHR11802 93 260 1.8E-21 T 16-09-2016 IPR001563 Peptidase S10, serine carboxypeptidase GO:0004185|GO:0006508 BER92_RS08720 0e4d8c15d03cd28876e6233aa8b008cc 501 Gene3D G3DSA:3.40.50.1820 49 465 7.6E-56 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS08720 0e4d8c15d03cd28876e6233aa8b008cc 501 SUPERFAMILY SSF53474 54 487 2.27E-71 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS08720 0e4d8c15d03cd28876e6233aa8b008cc 501 Pfam PF00450 Serine carboxypeptidase 93 468 2.5E-19 T 16-09-2016 IPR001563 Peptidase S10, serine carboxypeptidase GO:0004185|GO:0006508 BER92_RS00065 cf94778cf14210fc5ad62b68adcf7cbf 247 Pfam PF02077 SURF4 family 40 117 4.3E-5 T 16-09-2016 IPR002995 Surfeit locus 4 GO:0016021 BER92_RS12040 0b9bb27565d70097f9837a665bcc621f 518 PANTHER PTHR32057 9 518 1.0E-218 T 16-09-2016 BER92_RS12040 0b9bb27565d70097f9837a665bcc621f 518 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 2 500 45.145 T 16-09-2016 IPR003846 Uncharacterised protein family UPF0061 BER92_RS12040 0b9bb27565d70097f9837a665bcc621f 518 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 28 484 4.9E-136 T 16-09-2016 IPR003846 Uncharacterised protein family UPF0061 BER92_RS08555 1aaa86f5c14e585b383ced3be6a0e195 218 PANTHER PTHR36964 5 213 2.6E-75 T 16-09-2016 BER92_RS08555 1aaa86f5c14e585b383ced3be6a0e195 218 Hamap MF_01207 Sulfoxide reductase heme-binding subunit YedZ [yedZ]. 1 205 26.538 T 16-09-2016 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 BER92_RS08555 1aaa86f5c14e585b383ced3be6a0e195 218 Pfam PF01794 Ferric reductase like transmembrane component 53 166 1.5E-18 T 16-09-2016 IPR013130 Ferric reductase transmembrane component-like domain BER92_RS07795 f688941929e677cc86712e66867a25c6 362 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 56 280 7.8E-38 T 16-09-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 BER92_RS04175 1fb69475c4fb5351a6a8e1a271b51c67 176 Pfam PF01584 CheW-like domain 35 152 1.4E-24 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS04175 1fb69475c4fb5351a6a8e1a271b51c67 176 PANTHER PTHR22617 24 146 1.9E-23 T 16-09-2016 BER92_RS04175 1fb69475c4fb5351a6a8e1a271b51c67 176 SMART SM00260 29 166 3.4E-7 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS04175 1fb69475c4fb5351a6a8e1a271b51c67 176 SUPERFAMILY SSF50341 28 169 1.31E-25 T 16-09-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 BER92_RS04175 1fb69475c4fb5351a6a8e1a271b51c67 176 Gene3D G3DSA:2.40.50.180 72 115 2.6E-4 T 16-09-2016 BER92_RS10345 cd3a68eba33af90f970bc4f0a4b0e3b9 156 Pfam PF01609 Transposase DDE domain 1 153 2.6E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10345 cd3a68eba33af90f970bc4f0a4b0e3b9 156 PANTHER PTHR30007 1 155 4.8E-29 T 16-09-2016 BER92_RS10345 cd3a68eba33af90f970bc4f0a4b0e3b9 156 PANTHER PTHR30007:SF0 1 155 4.8E-29 T 16-09-2016 BER92_RS02860 2b9e8c77f8c113f5a0bc667468eea5cf 126 PANTHER PTHR35603 2 126 4.2E-41 T 16-09-2016 BER92_RS02860 2b9e8c77f8c113f5a0bc667468eea5cf 126 PANTHER PTHR35603:SF2 2 126 4.2E-41 T 16-09-2016 BER92_RS02860 2b9e8c77f8c113f5a0bc667468eea5cf 126 Pfam PF05433 Glycine zipper 2TM domain 66 107 6.2E-10 T 16-09-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 BER92_RS12730 f073fc5c0c0ab96c88e1b02944a36805 127 Pfam PF09685 Domain of unknown function (DUF4870) 21 126 2.4E-30 T 16-09-2016 IPR019109 Protein of unknown function DUF4870 BER92_RS02380 91a02a0692f1a57af83d52a59e45815f 154 SUPERFAMILY SSF52121 4 153 1.07E-52 T 16-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02380 91a02a0692f1a57af83d52a59e45815f 154 PANTHER PTHR21058 1 153 2.3E-64 T 16-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02380 91a02a0692f1a57af83d52a59e45815f 154 Gene3D G3DSA:3.40.50.960 2 151 1.3E-57 T 16-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02380 91a02a0692f1a57af83d52a59e45815f 154 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 153 28.312 T 16-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02380 91a02a0692f1a57af83d52a59e45815f 154 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 150 1.3E-50 T 16-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS02380 91a02a0692f1a57af83d52a59e45815f 154 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 149 4.4E-43 T 16-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 BER92_RS12290 85e5e17481f833d880247aca4893b761 480 PANTHER PTHR33803 7 480 0.0 T 16-09-2016 BER92_RS12290 85e5e17481f833d880247aca4893b761 480 Pfam PF05598 Transposase domain (DUF772) 84 158 3.3E-17 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS12290 85e5e17481f833d880247aca4893b761 480 Pfam PF01609 Transposase DDE domain 309 446 1.5E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS12290 85e5e17481f833d880247aca4893b761 480 PANTHER PTHR33803:SF1 7 480 0.0 T 16-09-2016 BER92_RS06660 dd4b2cf4b5ba16250148e45545bbf8fe 160 Pfam PF05433 Glycine zipper 2TM domain 68 114 1.4E-9 T 16-09-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 BER92_RS17080 3354e0bf329a8b807b17009d22947c71 231 PANTHER PTHR22916 1 231 8.5E-28 T 16-09-2016 BER92_RS17080 3354e0bf329a8b807b17009d22947c71 231 Pfam PF00535 Glycosyl transferase family 2 3 150 7.8E-14 T 16-09-2016 IPR001173 Glycosyltransferase 2-like BER92_RS17080 3354e0bf329a8b807b17009d22947c71 231 SUPERFAMILY SSF53448 3 189 1.03E-33 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS17080 3354e0bf329a8b807b17009d22947c71 231 Gene3D G3DSA:3.90.550.10 2 221 9.1E-29 T 16-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases BER92_RS05760 98ae3157b24e58e96b5decdf4b990a0d 80 Pfam PF01609 Transposase DDE domain 3 69 1.7E-5 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS02460 48e57f225d3f98a8335e91bf7bdbbe43 1934 SUPERFAMILY SSF48371 125 442 1.11E-23 T 16-09-2016 IPR016024 Armadillo-type fold GO:0005488 BER92_RS02460 48e57f225d3f98a8335e91bf7bdbbe43 1934 Gene3D G3DSA:1.25.10.10 294 609 4.0E-6 T 16-09-2016 IPR011989 Armadillo-like helical BER92_RS02460 48e57f225d3f98a8335e91bf7bdbbe43 1934 SUPERFAMILY SSF48371 411 640 1.25E-12 T 16-09-2016 IPR016024 Armadillo-type fold GO:0005488 BER92_RS00140 ca51fe4cf44b0c8778062ef7d6c0693f 62 PANTHER PTHR35604:SF2 18 57 6.5E-15 T 16-09-2016 BER92_RS00140 ca51fe4cf44b0c8778062ef7d6c0693f 62 PANTHER PTHR35604 18 57 6.5E-15 T 16-09-2016 BER92_RS16660 c16456db788c16cbff7ea965183fbc8b 451 Pfam PF09611 CRISPR-associated protein (Cas_Csy1) 39 428 8.2E-130 T 16-09-2016 IPR013397 CRISPR-associated protein Csy1 BER92_RS16660 c16456db788c16cbff7ea965183fbc8b 451 TIGRFAM TIGR02564 cas_Csy1: CRISPR type I-F/YPEST-associated protein Csy1 39 433 2.0E-105 T 16-09-2016 IPR013397 CRISPR-associated protein Csy1 BER92_RS18725 22d89399c9d8d75a281fe5eea36212c6 245 PANTHER PTHR24220 3 241 8.3E-161 T 16-09-2016 BER92_RS18725 22d89399c9d8d75a281fe5eea36212c6 245 SMART SM00382 26 212 5.6E-12 T 16-09-2016 IPR003593 AAA+ ATPase domain BER92_RS18725 22d89399c9d8d75a281fe5eea36212c6 245 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 16-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BER92_RS18725 22d89399c9d8d75a281fe5eea36212c6 245 PANTHER PTHR24220:SF460 3 241 8.3E-161 T 16-09-2016 BER92_RS18725 22d89399c9d8d75a281fe5eea36212c6 245 Pfam PF00005 ABC transporter 17 162 2.6E-32 T 16-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BER92_RS18725 22d89399c9d8d75a281fe5eea36212c6 245 SUPERFAMILY SSF52540 1 237 9.35E-67 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS18725 22d89399c9d8d75a281fe5eea36212c6 245 Gene3D G3DSA:3.40.50.300 3 237 3.6E-69 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 Gene3D G3DSA:2.40.128.20 4 161 2.7E-46 T 16-09-2016 IPR012674 Calycin BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 ProSitePatterns PS00213 Lipocalin signature. 14 25 - T 16-09-2016 IPR022272 Lipocalin family conserved site BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 PIRSF PIRSF036893 1 168 2.7E-52 T 16-09-2016 IPR022271 Lipocalin, ApoD type BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 PRINTS PR01171 Bacterial lipocalin signature 148 158 9.7E-9 T 16-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 PRINTS PR01171 Bacterial lipocalin signature 106 114 9.7E-9 T 16-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 PRINTS PR01171 Bacterial lipocalin signature 121 132 9.7E-9 T 16-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 PRINTS PR01171 Bacterial lipocalin signature 13 27 9.7E-9 T 16-09-2016 IPR002446 Lipocalin, bacterial GO:0005215 BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 Pfam PF08212 Lipocalin-like domain 13 158 8.0E-51 T 16-09-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 PANTHER PTHR10612 3 161 3.9E-41 T 16-09-2016 BER92_RS01570 65838f7fd1d82a28f8226b319d4b090a 169 SUPERFAMILY SSF50814 5 161 6.86E-37 T 16-09-2016 IPR011038 Calycin-like BER92_RS14860 bc2fb48eeba43cba0934466ccd2a94d4 106 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 100 1.6E-37 T 16-09-2016 IPR028909 Ribosomal protein L21-like GO:0005840 BER92_RS14860 bc2fb48eeba43cba0934466ccd2a94d4 106 SUPERFAMILY SSF141091 1 100 2.35E-34 T 16-09-2016 IPR028909 Ribosomal protein L21-like GO:0005840 BER92_RS14860 bc2fb48eeba43cba0934466ccd2a94d4 106 PANTHER PTHR21349 1 102 1.9E-38 T 16-09-2016 BER92_RS14860 bc2fb48eeba43cba0934466ccd2a94d4 106 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 102 25.553 T 16-09-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14860 bc2fb48eeba43cba0934466ccd2a94d4 106 ProSitePatterns PS01169 Ribosomal protein L21 signature. 71 93 - T 16-09-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS14860 bc2fb48eeba43cba0934466ccd2a94d4 106 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 100 1.4E-34 T 16-09-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BER92_RS07640 6d8b372623b25b39ba8dea171e279334 304 Pfam PF04796 Plasmid encoded RepA protein 91 244 4.1E-25 T 16-09-2016 IPR006881 Plasmid encoded RepA protein BER92_RS17205 218e152f916a1e6aa8d6658bcbb278b8 47 Pfam PF12244 Protein of unknown function (DUF3606) 4 44 1.9E-11 T 16-09-2016 IPR022037 Protein of unknown function DUF3606 BER92_RS02905 148e62436b0670cb35219989244533a7 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 16-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BER92_RS02905 148e62436b0670cb35219989244533a7 245 PANTHER PTHR24322:SF211 10 139 3.8E-51 T 16-09-2016 BER92_RS02905 148e62436b0670cb35219989244533a7 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.1E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 9.1E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 9.1E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 9.1E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 9.1E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 9.1E-35 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 PANTHER PTHR24322:SF211 155 190 3.8E-51 T 16-09-2016 BER92_RS02905 148e62436b0670cb35219989244533a7 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 3.1E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.1E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.1E-9 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 6.5E-53 T 16-09-2016 BER92_RS02905 148e62436b0670cb35219989244533a7 245 PANTHER PTHR24322 155 190 3.8E-51 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 PANTHER PTHR24322 10 139 3.8E-51 T 16-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR BER92_RS02905 148e62436b0670cb35219989244533a7 245 SUPERFAMILY SSF51735 5 242 1.92E-69 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS02905 148e62436b0670cb35219989244533a7 245 Gene3D G3DSA:3.40.50.720 4 242 1.1E-72 T 16-09-2016 IPR016040 NAD(P)-binding domain BER92_RS19065 24f6a00d56e0a24119a1775ecc18f01c 63 SUPERFAMILY SSF103473 1 61 7.72E-11 T 16-09-2016 IPR020846 Major facilitator superfamily domain BER92_RS19065 24f6a00d56e0a24119a1775ecc18f01c 63 Gene3D G3DSA:1.20.1250.20 1 62 3.4E-10 T 16-09-2016 BER92_RS19065 24f6a00d56e0a24119a1775ecc18f01c 63 PRINTS PR01035 Tetracycline resistance protein signature 21 43 6.9E-9 T 16-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BER92_RS19065 24f6a00d56e0a24119a1775ecc18f01c 63 PRINTS PR01035 Tetracycline resistance protein signature 49 63 6.9E-9 T 16-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BER92_RS19065 24f6a00d56e0a24119a1775ecc18f01c 63 PANTHER PTHR23504 1 63 4.6E-18 T 16-09-2016 BER92_RS19065 24f6a00d56e0a24119a1775ecc18f01c 63 PANTHER PTHR23504:SF18 1 63 4.6E-18 T 16-09-2016 BER92_RS19245 677cb3054fd1289fea48123642be535b 528 PANTHER PTHR30563 33 528 2.9E-137 T 16-09-2016 BER92_RS19245 677cb3054fd1289fea48123642be535b 528 Pfam PF02646 RmuC family 214 503 3.8E-76 T 16-09-2016 IPR003798 DNA recombination RmuC BER92_RS01175 c84a4a2712d10132cf650afb990d9bf4 145 Gene3D G3DSA:3.90.1590.10 25 126 1.7E-17 T 16-09-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 BER92_RS01175 c84a4a2712d10132cf650afb990d9bf4 145 SUPERFAMILY SSF51316 19 138 1.67E-30 T 16-09-2016 IPR011057 Mss4-like BER92_RS01175 c84a4a2712d10132cf650afb990d9bf4 145 PANTHER PTHR28620:SF2 1 127 3.4E-38 T 16-09-2016 BER92_RS01175 c84a4a2712d10132cf650afb990d9bf4 145 PANTHER PTHR28620 1 127 3.4E-38 T 16-09-2016 BER92_RS01175 c84a4a2712d10132cf650afb990d9bf4 145 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 46 124 3.1E-8 T 16-09-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 BER92_RS12420 0dd83f9d49577617ac85bdfda85f8dd7 232 Gene3D G3DSA:1.20.1540.10 4 206 2.0E-44 T 16-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BER92_RS12420 0dd83f9d49577617ac85bdfda85f8dd7 232 PANTHER PTHR22936 7 206 3.1E-38 T 16-09-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 BER92_RS12420 0dd83f9d49577617ac85bdfda85f8dd7 232 SMART SM01160 56 145 1.6E-7 T 16-09-2016 BER92_RS12420 0dd83f9d49577617ac85bdfda85f8dd7 232 Pfam PF01694 Rhomboid family 59 208 6.4E-39 T 16-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BER92_RS12420 0dd83f9d49577617ac85bdfda85f8dd7 232 SUPERFAMILY SSF144091 3 206 4.97E-45 T 16-09-2016 BER92_RS03435 9178bcfd07e58ee7712c78cfaa22f1bc 198 PANTHER PTHR23327 1 144 1.7E-37 T 16-09-2016 BER92_RS03435 9178bcfd07e58ee7712c78cfaa22f1bc 198 SUPERFAMILY SSF88697 13 197 1.52E-40 T 16-09-2016 IPR015947 PUA-like domain BER92_RS03435 9178bcfd07e58ee7712c78cfaa22f1bc 198 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 13 197 3.5E-13 T 16-09-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 BER92_RS03435 9178bcfd07e58ee7712c78cfaa22f1bc 198 PANTHER PTHR23327:SF0 1 144 1.7E-37 T 16-09-2016 BER92_RS03435 9178bcfd07e58ee7712c78cfaa22f1bc 198 SMART SM00464 12 198 0.0015 T 16-09-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 BER92_RS07740 fbdb9b91d9b1328217c5cdd8185adf1b 103 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 2 83 3.5E-23 T 16-09-2016 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB BER92_RS03500 47276edc8878fc5dd383d78da5529825 149 Pfam PF02643 Uncharacterized ACR, COG1430 34 140 4.0E-31 T 16-09-2016 IPR003795 Protein of unknown function DUF192 BER92_RS03500 47276edc8878fc5dd383d78da5529825 149 PANTHER PTHR37953 24 148 1.4E-42 T 16-09-2016 BER92_RS03500 47276edc8878fc5dd383d78da5529825 149 PANTHER PTHR37953:SF1 24 148 1.4E-42 T 16-09-2016 BER92_RS07275 60e48726ead78f077d9ceba764301f85 363 PANTHER PTHR11432:SF3 25 362 2.5E-160 T 16-09-2016 BER92_RS07275 60e48726ead78f077d9ceba764301f85 363 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 229 242 - T 16-09-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 BER92_RS07275 60e48726ead78f077d9ceba764301f85 363 PANTHER PTHR11432 25 362 2.5E-160 T 16-09-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 BER92_RS07275 60e48726ead78f077d9ceba764301f85 363 Pfam PF00146 NADH dehydrogenase 31 351 1.5E-117 T 16-09-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 BER92_RS07275 60e48726ead78f077d9ceba764301f85 363 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 24 357 24.127 T 16-09-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 BER92_RS03135 8db9b240d77701a6b59dd53787e7bd62 420 SMART SM01154 40 409 3.8E-145 T 16-09-2016 IPR012548 Protein of unknown function DUF1704 BER92_RS03135 8db9b240d77701a6b59dd53787e7bd62 420 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 20 402 1.4E-121 T 16-09-2016 IPR012656 Conserved hypothetical protein CHP02421, QEGLA BER92_RS03135 8db9b240d77701a6b59dd53787e7bd62 420 Pfam PF08014 Domain of unknown function (DUF1704) 49 406 1.9E-116 T 16-09-2016 IPR012548 Protein of unknown function DUF1704 BER92_RS13130 e05f3d0728bedcfda341286197080102 138 Pfam PF03203 MerC mercury resistance protein 11 123 1.5E-24 T 16-09-2016 IPR004891 MerC mercury resistance protein BER92_RS07755 8308018efebf45a4b25ef2a229b88172 368 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 56 280 6.1E-38 T 16-09-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 BER92_RS17185 f2d68b8db49f88352dccb99959a41d34 394 SUPERFAMILY SSF53756 130 388 3.56E-18 T 16-09-2016 BER92_RS17185 f2d68b8db49f88352dccb99959a41d34 394 Pfam PF13692 Glycosyl transferases group 1 244 359 1.1E-10 T 16-09-2016 BER92_RS07645 1994baf0aca9bc741589e64cb95aca0b 158 Pfam PF01609 Transposase DDE domain 1 155 1.0E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS07645 1994baf0aca9bc741589e64cb95aca0b 158 PANTHER PTHR30007:SF0 2 157 6.2E-29 T 16-09-2016 BER92_RS07645 1994baf0aca9bc741589e64cb95aca0b 158 PANTHER PTHR30007 2 157 6.2E-29 T 16-09-2016 BER92_RS12490 1994baf0aca9bc741589e64cb95aca0b 158 Pfam PF01609 Transposase DDE domain 1 155 1.0E-24 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS12490 1994baf0aca9bc741589e64cb95aca0b 158 PANTHER PTHR30007:SF0 2 157 6.2E-29 T 16-09-2016 BER92_RS12490 1994baf0aca9bc741589e64cb95aca0b 158 PANTHER PTHR30007 2 157 6.2E-29 T 16-09-2016 BER92_RS00775 68c112feaf035ae6ff4051a9a5b852b1 594 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 18 75 1.6E-26 T 16-09-2016 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 BER92_RS00775 68c112feaf035ae6ff4051a9a5b852b1 594 Pfam PF03237 Terminase-like family 168 577 1.5E-113 T 16-09-2016 IPR004921 Terminase, large subunit BER92_RS05745 450c3907bfa488b17633fcfd2989556c 90 Gene3D G3DSA:2.40.170.20 3 90 1.1E-4 T 16-09-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 BER92_RS09135 19020c02decc84e6b4639e9cf72bee51 84 SUPERFAMILY SSF47598 2 68 8.9E-20 T 16-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 BER92_RS09135 19020c02decc84e6b4639e9cf72bee51 84 Pfam PF03869 Arc-like DNA binding domain 9 46 1.3E-4 T 16-09-2016 IPR005569 Arc-like DNA binding domain GO:0003677 BER92_RS09135 19020c02decc84e6b4639e9cf72bee51 84 Gene3D G3DSA:1.10.1220.10 9 60 1.1E-8 T 16-09-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BER92_RS06200 1dfb097c98da0e80667d00efa07e9b90 312 PIRSF PIRSF029792 1 312 1.0E-99 T 16-09-2016 IPR008794 Proline racemase family BER92_RS06200 1dfb097c98da0e80667d00efa07e9b90 312 Gene3D G3DSA:3.10.310.10 145 299 1.0E-47 T 16-09-2016 BER92_RS06200 1dfb097c98da0e80667d00efa07e9b90 312 Pfam PF05544 Proline racemase 6 310 9.1E-105 T 16-09-2016 IPR008794 Proline racemase family BER92_RS06200 1dfb097c98da0e80667d00efa07e9b90 312 PANTHER PTHR33442 3 312 1.0E-145 T 16-09-2016 BER92_RS06200 1dfb097c98da0e80667d00efa07e9b90 312 SUPERFAMILY SSF54506 1 310 2.2E-91 T 16-09-2016 BER92_RS06200 1dfb097c98da0e80667d00efa07e9b90 312 Gene3D G3DSA:3.10.310.10 2 144 5.2E-51 T 16-09-2016 BER92_RS06200 1dfb097c98da0e80667d00efa07e9b90 312 PANTHER PTHR33442:SF2 3 312 1.0E-145 T 16-09-2016 BER92_RS07935 a4b89368cdc5538c8af384ce27d9eacc 143 PANTHER PTHR12901:SF7 1 140 3.2E-52 T 16-09-2016 BER92_RS07935 a4b89368cdc5538c8af384ce27d9eacc 143 PANTHER PTHR12901 1 140 3.2E-52 T 16-09-2016 BER92_RS07935 a4b89368cdc5538c8af384ce27d9eacc 143 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 134 4.3E-25 T 16-09-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain BER92_RS07935 a4b89368cdc5538c8af384ce27d9eacc 143 Gene3D G3DSA:3.30.530.20 1 139 3.2E-33 T 16-09-2016 IPR023393 START-like domain BER92_RS07935 a4b89368cdc5538c8af384ce27d9eacc 143 SUPERFAMILY SSF55961 1 140 1.18E-31 T 16-09-2016 BER92_RS18195 d4ec5c8ce0f1760162db9c5c8d7a84f2 165 PANTHER PTHR36109 1 163 8.5E-23 T 16-09-2016 BER92_RS15975 0f1260455e4c21142c8d1822dae77cc5 231 SUPERFAMILY SSF161098 20 220 1.03E-40 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS15975 0f1260455e4c21142c8d1822dae77cc5 231 PANTHER PTHR30450 5 231 4.6E-117 T 16-09-2016 BER92_RS15975 0f1260455e4c21142c8d1822dae77cc5 231 PANTHER PTHR30450:SF1 5 231 4.6E-117 T 16-09-2016 BER92_RS15975 0f1260455e4c21142c8d1822dae77cc5 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 53 227 3.1E-20 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS15975 0f1260455e4c21142c8d1822dae77cc5 231 Gene3D G3DSA:1.10.3720.10 18 229 3.2E-37 T 16-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 BER92_RS13735 b393e45a6cab7f917122d3552fe3ac91 1146 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 59 179 2.8E-10 T 16-09-2016 IPR018712 Domain of unknown function DUF2235 BER92_RS01840 9ea7d196db976c2bd6f0c0dbe51cbe8d 510 PANTHER PTHR38462 225 508 3.3E-63 T 16-09-2016 BER92_RS01840 9ea7d196db976c2bd6f0c0dbe51cbe8d 510 SUPERFAMILY SSF53098 310 493 3.62E-22 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS01840 9ea7d196db976c2bd6f0c0dbe51cbe8d 510 Gene3D G3DSA:3.30.420.10 319 499 3.1E-10 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS01840 9ea7d196db976c2bd6f0c0dbe51cbe8d 510 Pfam PF13482 RNase_H superfamily 319 493 6.8E-37 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS11445 415417e9189c2eaac372b55f4184bbd0 105 PANTHER PTHR35243:SF7 1 105 1.0E-64 T 16-09-2016 BER92_RS11445 415417e9189c2eaac372b55f4184bbd0 105 PANTHER PTHR35243 1 105 1.0E-64 T 16-09-2016 BER92_RS00505 ca0db4a2063b4f8a3d0b937901a3ca1c 84 SUPERFAMILY SSF46785 13 81 6.68E-5 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00505 ca0db4a2063b4f8a3d0b937901a3ca1c 84 Gene3D G3DSA:1.10.10.10 42 81 1.3E-5 T 16-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain BER92_RS00485 e4d64cbe4c05aebdb4a030972dfabb98 144 Pfam PF06903 VirK protein 26 121 3.7E-37 T 16-09-2016 IPR010694 Uncharacterised protein family VirK BER92_RS00485 e4d64cbe4c05aebdb4a030972dfabb98 144 Gene3D G3DSA:3.10.450.50 63 122 5.1E-4 T 16-09-2016 IPR032710 NTF2-like domain BER92_RS09320 10b3ae991d155e861a64410c7e052048 298 SUPERFAMILY SSF51569 3 285 1.03E-68 T 16-09-2016 BER92_RS09320 10b3ae991d155e861a64410c7e052048 298 Gene3D G3DSA:3.20.20.70 4 288 2.4E-88 T 16-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 BER92_RS09320 10b3ae991d155e861a64410c7e052048 298 Pfam PF00682 HMGL-like 5 275 3.5E-51 T 16-09-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 BER92_RS09320 10b3ae991d155e861a64410c7e052048 298 PANTHER PTHR10277:SF40 1 294 2.3E-172 T 16-09-2016 BER92_RS09320 10b3ae991d155e861a64410c7e052048 298 PANTHER PTHR10277 1 294 2.3E-172 T 16-09-2016 BER92_RS00710 5e7f23a61364e73c0498add8cce39790 229 Pfam PF13503 Domain of unknown function (DUF4123) 14 69 1.7E-11 T 16-09-2016 IPR025391 Domain of unknown function DUF4123 BER92_RS16350 259ffc513a7a413fcb061f4ad2d9acd7 296 PANTHER PTHR38684 4 296 4.8E-88 T 16-09-2016 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 10 29 7.6E-64 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 29 49 7.6E-64 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 187 212 7.6E-64 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 163 184 7.6E-64 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 49 68 7.6E-64 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 142 162 7.6E-64 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 Pfam PF00813 FliP family 13 209 3.7E-64 T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 PANTHER PTHR30587:SF2 4 214 3.4E-137 T 16-09-2016 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 190 202 - T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 9 209 3.6E-89 T 16-09-2016 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 142 157 - T 16-09-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BER92_RS12930 8e993ec2b411897270f760083a95091d 214 PANTHER PTHR30587 4 214 3.4E-137 T 16-09-2016 BER92_RS01945 94ce2c94d9e79ff1ba1e93be45734c42 140 Pfam PF09912 Uncharacterized protein conserved in bacteria (DUF2141) 29 134 6.8E-32 T 16-09-2016 IPR018673 Protein of unknown function DUF2141 BER92_RS03010 dd9f518d0c2cdcc973d8f14a74cb5b81 271 Gene3D G3DSA:2.60.120.180 46 266 3.8E-49 T 16-09-2016 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6784|UniPathway: UPA00114 BER92_RS03010 dd9f518d0c2cdcc973d8f14a74cb5b81 271 SUPERFAMILY SSF49899 43 265 9.72E-50 T 16-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain BER92_RS03010 dd9f518d0c2cdcc973d8f14a74cb5b81 271 PANTHER PTHR34002 40 265 2.5E-45 T 16-09-2016 BER92_RS03010 dd9f518d0c2cdcc973d8f14a74cb5b81 271 Pfam PF01670 Glycosyl hydrolase family 12 90 260 1.1E-18 T 16-09-2016 IPR002594 Glycoside hydrolase family 12 GO:0000272|GO:0008810 BER92_RS00840 1b3ebdd7e1df8a9434d8f676d93d1a47 170 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 1 132 1.9E-63 T 16-09-2016 IPR006521 Tail protein I BER92_RS00840 1b3ebdd7e1df8a9434d8f676d93d1a47 170 Pfam PF09684 Phage tail protein (Tail_P2_I) 2 135 2.1E-43 T 16-09-2016 IPR006521 Tail protein I BER92_RS04930 0f30dad511b01ed89ee305e21242d140 157 Pfam PF11304 Protein of unknown function (DUF3106) 50 145 2.9E-19 T 16-09-2016 IPR021455 Protein of unknown function DUF3106 BER92_RS03810 cbd202a816824018a4599b106d25170e 145 Pfam PF05258 Protein of unknown function (DUF721) 28 93 5.5E-12 T 16-09-2016 IPR007922 Protein of unknown function DUF721/UPF0232 BER92_RS19225 1184dc5fcf18010928b3f6b434081d9c 347 PANTHER PTHR30035:SF3 2 43 1.0E-131 T 16-09-2016 BER92_RS19225 1184dc5fcf18010928b3f6b434081d9c 347 PANTHER PTHR30035:SF3 98 347 1.0E-131 T 16-09-2016 BER92_RS19225 1184dc5fcf18010928b3f6b434081d9c 347 PANTHER PTHR30035 2 43 1.0E-131 T 16-09-2016 IPR007428 MlaA lipoprotein GO:0016020 BER92_RS19225 1184dc5fcf18010928b3f6b434081d9c 347 PANTHER PTHR30035 98 347 1.0E-131 T 16-09-2016 IPR007428 MlaA lipoprotein GO:0016020 BER92_RS19225 1184dc5fcf18010928b3f6b434081d9c 347 Pfam PF04333 MlaA lipoprotein 116 307 1.7E-71 T 16-09-2016 IPR007428 MlaA lipoprotein GO:0016020 BER92_RS19225 1184dc5fcf18010928b3f6b434081d9c 347 PRINTS PR01805 VacJ lipoprotein signature 134 150 7.0E-23 T 16-09-2016 IPR007428 MlaA lipoprotein GO:0016020 BER92_RS19225 1184dc5fcf18010928b3f6b434081d9c 347 PRINTS PR01805 VacJ lipoprotein signature 117 130 7.0E-23 T 16-09-2016 IPR007428 MlaA lipoprotein GO:0016020 BER92_RS19225 1184dc5fcf18010928b3f6b434081d9c 347 PRINTS PR01805 VacJ lipoprotein signature 185 202 7.0E-23 T 16-09-2016 IPR007428 MlaA lipoprotein GO:0016020 BER92_RS19225 1184dc5fcf18010928b3f6b434081d9c 347 PRINTS PR01805 VacJ lipoprotein signature 221 238 7.0E-23 T 16-09-2016 IPR007428 MlaA lipoprotein GO:0016020 BER92_RS13830 5106758d09aa97984c5a835de425ec7a 439 PANTHER PTHR35243:SF12 44 432 1.7E-260 T 16-09-2016 BER92_RS13830 5106758d09aa97984c5a835de425ec7a 439 PANTHER PTHR35243 44 432 1.7E-260 T 16-09-2016 BER92_RS01995 c372e51054900a1ad042a34f9e20307b 264 Pfam PF12787 EcsC protein family 23 244 9.5E-38 T 16-09-2016 IPR024787 EcsC protein BER92_RS09615 642e91f339221d8b2f185683d9dcffef 105 Pfam PF10734 Protein of unknown function (DUF2523) 31 88 2.6E-9 T 16-09-2016 IPR019670 Protein of unkown function DUF2523 BER92_RS00935 33c745783d32010238b882c0f057ed7f 304 PIRSF PIRSF026649 1 295 1.4E-75 T 16-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BER92_RS00935 33c745783d32010238b882c0f057ed7f 304 PANTHER PTHR30606 10 283 2.8E-55 T 16-09-2016 BER92_RS00935 33c745783d32010238b882c0f057ed7f 304 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 11 284 7.4E-45 T 16-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BER92_RS08375 816bd24cfa143af65da6f35fa8a0bddb 188 Pfam PF11159 Protein of unknown function (DUF2939) 13 105 5.9E-24 T 16-09-2016 IPR021330 Protein of unknown function DUF2939 BER92_RS00585 e24210768edc1f66fd4c27e07df62281 68 PANTHER PTHR33803 6 68 2.8E-19 T 16-09-2016 BER92_RS00585 e24210768edc1f66fd4c27e07df62281 68 PANTHER PTHR33803:SF1 6 68 2.8E-19 T 16-09-2016 BER92_RS07910 10e8ce70920f204a6286b0cd35d571ba 619 Pfam PF13910 Domain of unknown function (DUF4209) 542 610 2.1E-12 T 16-09-2016 IPR025209 Domain of unknown function DUF4209 BER92_RS10915 c8079649c14c4fd733191b0db960674d 523 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 54 179 1.8E-12 T 16-09-2016 IPR018712 Domain of unknown function DUF2235 BER92_RS12890 906485f1b3ce1b0e9fa72180cc40dc28 209 Pfam PF09502 Bacterial type III secretion protein (HrpB4) 5 203 1.7E-45 T 16-09-2016 IPR013393 Type III secretion protein HrpB4 BER92_RS12890 906485f1b3ce1b0e9fa72180cc40dc28 209 TIGRFAM TIGR02560 HrpB4: type III secretion protein HrpB4 3 209 1.5E-55 T 16-09-2016 IPR013393 Type III secretion protein HrpB4 BER92_RS13255 9fddd70a69e2319fa8307cc41f9b2767 128 Pfam PF01609 Transposase DDE domain 2 118 1.5E-11 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS13255 9fddd70a69e2319fa8307cc41f9b2767 128 PANTHER PTHR30007 1 127 1.2E-21 T 16-09-2016 BER92_RS13255 9fddd70a69e2319fa8307cc41f9b2767 128 PANTHER PTHR30007:SF0 1 127 1.2E-21 T 16-09-2016 BER92_RS12995 50d915a18b3c2ee1d4535acf921f2d49 301 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 49 239 4.5E-26 T 16-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 BER92_RS12995 50d915a18b3c2ee1d4535acf921f2d49 301 Gene3D G3DSA:2.40.100.10 47 124 9.3E-21 T 16-09-2016 IPR029000 Cyclophilin-like domain BER92_RS12995 50d915a18b3c2ee1d4535acf921f2d49 301 Gene3D G3DSA:2.40.100.10 162 216 9.3E-21 T 16-09-2016 IPR029000 Cyclophilin-like domain BER92_RS12995 50d915a18b3c2ee1d4535acf921f2d49 301 SUPERFAMILY SSF50891 48 124 5.99E-27 T 16-09-2016 IPR029000 Cyclophilin-like domain BER92_RS12995 50d915a18b3c2ee1d4535acf921f2d49 301 SUPERFAMILY SSF50891 161 260 5.99E-27 T 16-09-2016 IPR029000 Cyclophilin-like domain BER92_RS00880 46f95353d920283e05aef2987806e651 956 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 198 545 7.8E-69 T 16-09-2016 IPR010090 Phage tail tape measure protein BER92_RS00880 46f95353d920283e05aef2987806e651 956 Pfam PF10145 Phage-related minor tail protein 237 435 8.4E-31 T 16-09-2016 IPR010090 Phage tail tape measure protein BER92_RS00880 46f95353d920283e05aef2987806e651 956 PANTHER PTHR37813 1 956 3.3E-156 T 16-09-2016 BER92_RS19115 1f9612499adb0f926456b99547c8f297 490 Pfam PF11855 Protein of unknown function (DUF3375) 12 480 3.2E-145 T 16-09-2016 IPR021804 Protein of unknown function DUF3375 BER92_RS17240 bbd0a9245a892dc6e43f8efb7657705b 814 Pfam PF05650 Domain of unknown function (DUF802) 491 543 3.8E-13 T 16-09-2016 IPR008520 Domain of unknown function DUF802 BER92_RS17240 bbd0a9245a892dc6e43f8efb7657705b 814 Pfam PF05650 Domain of unknown function (DUF802) 312 359 3.8E-9 T 16-09-2016 IPR008520 Domain of unknown function DUF802 BER92_RS17240 bbd0a9245a892dc6e43f8efb7657705b 814 Pfam PF05650 Domain of unknown function (DUF802) 436 488 3.2E-16 T 16-09-2016 IPR008520 Domain of unknown function DUF802 BER92_RS17240 bbd0a9245a892dc6e43f8efb7657705b 814 Pfam PF05650 Domain of unknown function (DUF802) 374 417 1.7E-7 T 16-09-2016 IPR008520 Domain of unknown function DUF802 BER92_RS18185 091f6d835681a7647000cae076ef03ea 259 PANTHER PTHR38589 1 249 1.8E-54 T 16-09-2016 BER92_RS18185 091f6d835681a7647000cae076ef03ea 259 PANTHER PTHR38589:SF1 1 249 1.8E-54 T 16-09-2016 BER92_RS04570 b65e9cb2d4faebc6694e51b994569130 345 Pfam PF13387 Domain of unknown function (DUF4105) 128 275 1.0E-37 T 16-09-2016 IPR025178 Domain of unknown function DUF4105 BER92_RS08155 3369eb693142898c1fdd14396df2ba70 280 Pfam PF13557 Putative MetA-pathway of phenol degradation 63 279 4.3E-13 T 16-09-2016 IPR025737 MetA-pathway of phenol degradation, putative BER92_RS14650 c3c5fad5c7a57729a1c37ba26f82f219 225 Pfam PF10679 Protein of unknown function (DUF2491) 5 222 6.7E-64 T 16-09-2016 IPR019621 Protein of unknown function DUF2491 BER92_RS07155 cf2296eadf4d251d969f31890a183ca0 121 PANTHER PTHR30007:SF0 4 109 2.7E-24 T 16-09-2016 BER92_RS07155 cf2296eadf4d251d969f31890a183ca0 121 PANTHER PTHR30007 4 109 2.7E-24 T 16-09-2016 BER92_RS07155 cf2296eadf4d251d969f31890a183ca0 121 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 84 9.8E-26 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS12235 415ce070a91782fe17e1e590b21cf30d 296 Pfam PF07103 Protein of unknown function (DUF1365) 33 289 2.2E-72 T 16-09-2016 IPR010775 Protein of unknown function DUF1365 BER92_RS12235 415ce070a91782fe17e1e590b21cf30d 296 PANTHER PTHR33973 1 291 4.1E-77 T 16-09-2016 BER92_RS14735 f88a05aa13c7bf0cfb8551d9700cdfca 122 Gene3D G3DSA:3.40.50.2300 3 119 6.7E-30 T 16-09-2016 BER92_RS14735 f88a05aa13c7bf0cfb8551d9700cdfca 122 SUPERFAMILY SSF52172 4 119 3.27E-27 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS14735 f88a05aa13c7bf0cfb8551d9700cdfca 122 Pfam PF00072 Response regulator receiver domain 8 115 6.6E-19 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS14735 f88a05aa13c7bf0cfb8551d9700cdfca 122 SMART SM00448 5 115 1.7E-23 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS14735 f88a05aa13c7bf0cfb8551d9700cdfca 122 PANTHER PTHR26402 5 116 8.4E-23 T 16-09-2016 BER92_RS16070 f7393fff08c0d7ca1942b1c9913f678d 191 Pfam PF11454 Protein of unknown function (DUF3016) 42 180 1.1E-48 T 16-09-2016 IPR021557 Protein of unknown function DUF3016 BER92_RS06835 f6c55890b6e456c2c207efe755a0716f 103 Pfam PF13936 Helix-turn-helix domain 3 44 9.5E-13 T 16-09-2016 IPR025246 Transposase IS30-like HTH domain BER92_RS15130 95f01594dc9cd7df713d328dc93ea7ed 600 PANTHER PTHR34384 1 590 1.2E-235 T 16-09-2016 BER92_RS15130 95f01594dc9cd7df713d328dc93ea7ed 600 Pfam PF04183 IucA / IucC family 160 375 6.0E-34 T 16-09-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 BER92_RS15130 95f01594dc9cd7df713d328dc93ea7ed 600 PANTHER PTHR34384:SF6 1 590 1.2E-235 T 16-09-2016 BER92_RS15130 95f01594dc9cd7df713d328dc93ea7ed 600 Pfam PF06276 Ferric iron reductase FhuF-like transporter 398 564 4.6E-20 T 16-09-2016 IPR022770 Ferric iron reductase FhuF domain BER92_RS01605 e78deb91639c8fea31cc1e4ac2c209d9 199 Pfam PF14470 Bacterial PH domain 28 121 3.9E-19 T 16-09-2016 BER92_RS01345 6c54edb9bd75e230d580c5bc43bb1bf7 50 Pfam PF08085 Entericidin EcnA/B family 22 42 1.9E-8 T 16-09-2016 IPR012556 Entericidin A/B GO:0009636|GO:0016020 BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 16-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 PRINTS PR00421 Thioredoxin family signature 24 32 4.1E-8 T 16-09-2016 BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 PRINTS PR00421 Thioredoxin family signature 32 41 4.1E-8 T 16-09-2016 BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 PRINTS PR00421 Thioredoxin family signature 72 83 4.1E-8 T 16-09-2016 BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 TIGRFAM TIGR01068 thioredoxin: thioredoxin 10 107 7.7E-38 T 16-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 PIRSF PIRSF000077 2 108 8.7E-42 T 16-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 Pfam PF00085 Thioredoxin 5 106 2.2E-32 T 16-09-2016 IPR013766 Thioredoxin domain GO:0045454 BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 PANTHER PTHR10438 3 106 4.3E-40 T 16-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 SUPERFAMILY SSF52833 3 109 4.76E-40 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS00240 2e1e3210cf7ca2c7eb64ca24d7b64c1e 113 Gene3D G3DSA:3.40.30.10 2 109 4.2E-38 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS16605 ca0b5495811c984e3e794658cb7e7ac0 128 Pfam PF03203 MerC mercury resistance protein 9 118 7.6E-22 T 16-09-2016 IPR004891 MerC mercury resistance protein BER92_RS19290 bbbdcc10f3cdf888c192ca63314768d0 318 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 6 312 1.8E-119 T 16-09-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 BER92_RS19290 bbbdcc10f3cdf888c192ca63314768d0 318 PANTHER PTHR30238 4 317 1.2E-148 T 16-09-2016 BER92_RS19290 bbbdcc10f3cdf888c192ca63314768d0 318 PANTHER PTHR30238:SF0 4 317 1.2E-148 T 16-09-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 BER92_RS19290 bbbdcc10f3cdf888c192ca63314768d0 318 Pfam PF03741 Integral membrane protein TerC family 80 282 2.8E-54 T 16-09-2016 IPR005496 Integral membrane protein TerC GO:0016021 BER92_RS04535 4d570107c0fe7420a587177391408984 198 SUPERFAMILY SSF56925 32 198 2.41E-16 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS04535 4d570107c0fe7420a587177391408984 198 Gene3D G3DSA:2.40.160.20 9 198 2.4E-22 T 16-09-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 BER92_RS04535 4d570107c0fe7420a587177391408984 198 Pfam PF13505 Outer membrane protein beta-barrel domain 8 198 6.3E-17 T 16-09-2016 IPR027385 Outer membrane protein beta-barrel BER92_RS09160 054ff6aec8a81e28cb6221b2492aab27 284 SUPERFAMILY SSF53098 112 278 8.35E-42 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS09160 054ff6aec8a81e28cb6221b2492aab27 284 Pfam PF00665 Integrase core domain 119 233 4.4E-32 T 16-09-2016 IPR001584 Integrase, catalytic core GO:0015074 BER92_RS09160 054ff6aec8a81e28cb6221b2492aab27 284 Pfam PF13276 HTH-like domain 38 91 3.7E-14 T 16-09-2016 IPR025948 HTH-like domain BER92_RS09160 054ff6aec8a81e28cb6221b2492aab27 284 Gene3D G3DSA:3.30.420.10 113 272 7.6E-37 T 16-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 BER92_RS09160 054ff6aec8a81e28cb6221b2492aab27 284 PANTHER PTHR32552 12 282 2.5E-87 T 16-09-2016 BER92_RS15870 f17c078c83296e5a34a21693ed7ffc82 323 SUPERFAMILY SSF51126 15 291 8.17E-25 T 16-09-2016 IPR011050 Pectin lyase fold/virulence factor BER92_RS15870 f17c078c83296e5a34a21693ed7ffc82 323 Pfam PF13229 Right handed beta helix region 151 263 4.6E-5 T 16-09-2016 BER92_RS15870 f17c078c83296e5a34a21693ed7ffc82 323 Gene3D G3DSA:2.160.20.10 17 281 3.1E-22 T 16-09-2016 IPR012334 Pectin lyase fold BER92_RS18875 2b6aee360328c48d8311ac5085842f29 133 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 84 2.7E-26 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS18875 2b6aee360328c48d8311ac5085842f29 133 PANTHER PTHR30007 4 129 9.6E-25 T 16-09-2016 BER92_RS18875 2b6aee360328c48d8311ac5085842f29 133 PANTHER PTHR30007:SF0 4 129 9.6E-25 T 16-09-2016 BER92_RS02925 e764d07935893209e051e3d762aa8181 238 Pfam PF01203 Type II secretion system (T2SS), protein N 39 222 2.9E-13 T 16-09-2016 IPR022792 Type II secretion system, protein N BER92_RS10595 796ab4b1ee49c1347b1c0c4abe41a90c 391 Gene3D G3DSA:3.40.50.1820 215 322 1.3E-13 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS10595 796ab4b1ee49c1347b1c0c4abe41a90c 391 Gene3D G3DSA:3.40.50.1820 2 35 1.3E-13 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS10595 796ab4b1ee49c1347b1c0c4abe41a90c 391 PANTHER PTHR33938:SF6 1 379 1.2E-143 T 16-09-2016 BER92_RS10595 796ab4b1ee49c1347b1c0c4abe41a90c 391 Pfam PF07519 Tannase and feruloyl esterase 1 374 1.2E-106 T 16-09-2016 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 BER92_RS10595 796ab4b1ee49c1347b1c0c4abe41a90c 391 SUPERFAMILY SSF53474 134 152 4.45E-15 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS10595 796ab4b1ee49c1347b1c0c4abe41a90c 391 SUPERFAMILY SSF53474 2 37 4.45E-15 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS10595 796ab4b1ee49c1347b1c0c4abe41a90c 391 SUPERFAMILY SSF53474 214 320 4.45E-15 T 16-09-2016 IPR029058 Alpha/Beta hydrolase fold BER92_RS10595 796ab4b1ee49c1347b1c0c4abe41a90c 391 PANTHER PTHR33938 1 379 1.2E-143 T 16-09-2016 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 BER92_RS13560 128fbed0e1c0051720476736f8be2958 110 SUPERFAMILY SSF47781 25 91 1.89E-25 T 16-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 BER92_RS13560 128fbed0e1c0051720476736f8be2958 110 PANTHER PTHR21180 23 105 5.5E-26 T 16-09-2016 BER92_RS13560 128fbed0e1c0051720476736f8be2958 110 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 26 86 1.3E-22 T 16-09-2016 IPR004509 Competence protein ComEA, helix-hairpin-helix domain BER92_RS13560 128fbed0e1c0051720476736f8be2958 110 Gene3D G3DSA:1.10.150.320 25 95 5.1E-18 T 16-09-2016 BER92_RS13560 128fbed0e1c0051720476736f8be2958 110 Pfam PF12836 Helix-hairpin-helix motif 26 86 3.6E-22 T 16-09-2016 BER92_RS12245 3bdafa5d2ee3bfbf92e32c9cfca1bc14 181 Pfam PF11086 Protein of unknown function (DUF2878) 4 158 2.6E-38 T 16-09-2016 IPR021306 Protein of unknown function DUF2878 BER92_RS02490 6e43e63dd408969645420df0ec5862d9 363 Pfam PF07759 Protein of unknown function (DUF1615) 47 362 1.7E-136 T 16-09-2016 IPR011673 Protein of unknown function DUF1615 BER92_RS02490 6e43e63dd408969645420df0ec5862d9 363 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 12 363 0.0 T 16-09-2016 IPR011673 Protein of unknown function DUF1615 BER92_RS01745 daa71ca6af673a026e7b42be98baf018 257 SUPERFAMILY SSF53901 6 183 1.59E-11 T 16-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 BER92_RS01745 daa71ca6af673a026e7b42be98baf018 257 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 31 178 4.3E-24 T 16-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal BER92_RS15835 fdbae63c69e954c62982cad1c8b95584 314 Pfam PF05275 Copper resistance protein B precursor (CopB) 110 314 2.8E-77 T 16-09-2016 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 BER92_RS09940 b83f51e62a6302ed6051007bc1129e12 359 Pfam PF15584 Immunity protein 72 196 289 9.7E-17 T 16-09-2016 IPR028966 Immunity protein 72 BER92_RS09940 b83f51e62a6302ed6051007bc1129e12 359 Pfam PF15602 Immunity protein 71 11 167 6.3E-46 T 16-09-2016 IPR028950 Immunity protein 71 BER92_RS09130 6dd2a2b02a3ab4780cb5f04408fb7c11 93 ProDom PD031251 TRAK PLASMID ORIT BINDING TRANSFER SYSTEM DNA ORIT-BINDING SEQUENCING DIRECT 31 87 3.0E-14 T 16-09-2016 BER92_RS13325 e017c32afbfd4c972a8cbd694973e486 415 PANTHER PTHR34289:SF3 8 413 1.8E-106 T 16-09-2016 BER92_RS13325 e017c32afbfd4c972a8cbd694973e486 415 PANTHER PTHR34289 8 413 1.8E-106 T 16-09-2016 BER92_RS13325 e017c32afbfd4c972a8cbd694973e486 415 Pfam PF05684 Protein of unknown function (DUF819) 17 412 6.2E-135 T 16-09-2016 IPR008537 Protein of unknown function DUF819 BER92_RS02910 89ce9160091dbc6523c50626c367a3ad 394 Gene3D G3DSA:3.40.50.150 86 185 1.1E-4 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS02910 89ce9160091dbc6523c50626c367a3ad 394 PANTHER PTHR12049 6 383 4.5E-68 T 16-09-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA BER92_RS02910 89ce9160091dbc6523c50626c367a3ad 394 SUPERFAMILY SSF53335 21 379 2.62E-83 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS02910 89ce9160091dbc6523c50626c367a3ad 394 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 84 322 2.1E-42 T 16-09-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA BER92_RS17140 10bbc0a678ab1c2fe43b67345bc075e6 127 SMART SM00448 9 117 6.9E-6 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS17140 10bbc0a678ab1c2fe43b67345bc075e6 127 Gene3D G3DSA:3.40.50.2300 7 120 2.9E-14 T 16-09-2016 BER92_RS17140 10bbc0a678ab1c2fe43b67345bc075e6 127 Pfam PF00072 Response regulator receiver domain 11 67 1.8E-5 T 16-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 BER92_RS17140 10bbc0a678ab1c2fe43b67345bc075e6 127 SUPERFAMILY SSF52172 7 120 4.84E-16 T 16-09-2016 IPR011006 CheY-like superfamily BER92_RS10635 5ec04ff8aeb1a0a2953b3809403e5c26 111 Pfam PF05876 Phage terminase large subunit (GpA) 23 98 4.9E-7 T 16-09-2016 IPR008866 Bacteriophage lambda, GpA BER92_RS15440 5e12a86b00f5bea002915543f308ae67 143 Gene3D G3DSA:3.40.50.1000 40 139 7.6E-4 T 16-09-2016 IPR023214 HAD-like domain BER92_RS11290 a781eb3f2dbf4aa9192139383b47e689 159 Pfam PF11745 Protein of unknown function (DUF3304) 17 119 4.4E-25 T 16-09-2016 IPR021733 Protein of unknown function DUF3304 BER92_RS03530 79493a8570b6eb7910235fa2bce68274 73 TIGRFAM TIGR02449 TIGR02449: TIGR02449 family protein 9 73 1.6E-31 T 16-09-2016 IPR012662 Conserved hypothetical protein CHP02449 BER92_RS09920 87ddac8e80f76e10a3372cdbbc9321f2 359 Pfam PF15602 Immunity protein 71 11 167 2.2E-46 T 16-09-2016 IPR028950 Immunity protein 71 BER92_RS09920 87ddac8e80f76e10a3372cdbbc9321f2 359 Pfam PF15584 Immunity protein 72 196 289 4.6E-17 T 16-09-2016 IPR028966 Immunity protein 72 BER92_RS17385 a3c5410f74a77609ebbb16042d521744 421 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 1 146 1.0E-62 T 16-09-2016 IPR009827 Dicarboxylate carrier MatC N-terminal BER92_RS10130 9b9cefa1d05fdf8881fd51ec58b78ac7 223 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 18 218 8.1E-21 T 16-09-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 BER92_RS10130 9b9cefa1d05fdf8881fd51ec58b78ac7 223 Gene3D G3DSA:2.50.20.10 38 219 9.9E-53 T 16-09-2016 BER92_RS10130 9b9cefa1d05fdf8881fd51ec58b78ac7 223 PANTHER PTHR35869 8 221 7.0E-56 T 16-09-2016 BER92_RS10130 9b9cefa1d05fdf8881fd51ec58b78ac7 223 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 47 211 3.6E-51 T 16-09-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like BER92_RS10130 9b9cefa1d05fdf8881fd51ec58b78ac7 223 SUPERFAMILY SSF89392 37 219 7.85E-43 T 16-09-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX BER92_RS10130 9b9cefa1d05fdf8881fd51ec58b78ac7 223 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 22 221 30.938 T 16-09-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 BER92_RS03860 952bfa6461ee376ce3d2705907c169d7 293 SUPERFAMILY SSF54001 83 272 2.75E-23 T 16-09-2016 BER92_RS03860 952bfa6461ee376ce3d2705907c169d7 293 Gene3D G3DSA:3.30.310.130 153 234 2.7E-8 T 16-09-2016 BER92_RS03860 952bfa6461ee376ce3d2705907c169d7 293 PANTHER PTHR12606:SF18 63 244 2.3E-28 T 16-09-2016 BER92_RS03860 952bfa6461ee376ce3d2705907c169d7 293 PANTHER PTHR12606 63 244 2.3E-28 T 16-09-2016 BER92_RS03860 952bfa6461ee376ce3d2705907c169d7 293 Pfam PF02902 Ulp1 protease family, C-terminal catalytic domain 93 245 1.5E-16 T 16-09-2016 IPR003653 Ulp1 protease family, C-terminal catalytic domain GO:0006508|GO:0008234 BER92_RS11370 3bca1dd97418e82905d3746deb216541 286 Pfam PF05593 RHS Repeat 135 171 7.7E-9 T 16-09-2016 IPR031325 RHS repeat BER92_RS11370 3bca1dd97418e82905d3746deb216541 286 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 244 276 0.0012 T 16-09-2016 IPR006530 YD repeat BER92_RS11370 3bca1dd97418e82905d3746deb216541 286 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 135 175 1.6E-5 T 16-09-2016 IPR006530 YD repeat BER92_RS00825 3477ad0ed747b1a3e5c4c0b41b40cf69 139 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 130 1.2E-44 T 16-09-2016 IPR009678 Bacteriophage tail completion protein R BER92_RS01240 3315b9c122337152cbf8819ceceb3029 140 PANTHER PTHR36919 23 137 5.1E-29 T 16-09-2016 BER92_RS01240 3315b9c122337152cbf8819ceceb3029 140 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 29 137 3.9E-28 T 16-09-2016 IPR019223 Domain of unknown function DUF2147 BER92_RS01240 3315b9c122337152cbf8819ceceb3029 140 PANTHER PTHR36919:SF2 23 137 5.1E-29 T 16-09-2016 BER92_RS14665 0621d486517721ed42871d9959af5e45 138 Pfam PF09938 Uncharacterized protein conserved in bacteria (DUF2170) 4 137 6.1E-42 T 16-09-2016 IPR019231 Protein of unknown function DUF2170 BER92_RS19180 5e9f50f00413f6aa6fad730819e58ce6 93 SUPERFAMILY SSF143011 5 93 3.79E-16 T 16-09-2016 BER92_RS19180 5e9f50f00413f6aa6fad730819e58ce6 93 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 7 93 4.3E-20 T 16-09-2016 IPR007711 Toxin HigB-1 BER92_RS19180 5e9f50f00413f6aa6fad730819e58ce6 93 PANTHER PTHR40266 1 93 9.8E-43 T 16-09-2016 BER92_RS19180 5e9f50f00413f6aa6fad730819e58ce6 93 PANTHER PTHR40266:SF2 1 93 9.8E-43 T 16-09-2016 BER92_RS19005 7d2afaa266da303f17515725e6ffe94d 73 Gene3D G3DSA:3.20.20.80 5 39 4.2E-6 T 16-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 BER92_RS19005 7d2afaa266da303f17515725e6ffe94d 73 SUPERFAMILY SSF51445 6 42 4.42E-6 T 16-09-2016 IPR017853 Glycoside hydrolase superfamily BER92_RS19005 7d2afaa266da303f17515725e6ffe94d 73 Pfam PF07488 Glycosyl hydrolase family 67 middle domain 4 36 1.8E-5 T 16-09-2016 IPR011100 Glycosyl hydrolase family 67, catalytic domain GO:0005576|GO:0045493|GO:0046559 BER92_RS12790 2f11ea4030dfaba57c6d2d0575d07a09 59 Pfam PF01527 Transposase 11 39 1.8E-6 T 16-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BER92_RS10580 242d63051960493a25d58416115524c5 248 Pfam PF13645 L,D-transpeptidase catalytic domain 50 219 2.0E-65 T 16-09-2016 IPR032676 Putative L,D-transpeptidase catalytic domain BER92_RS10580 242d63051960493a25d58416115524c5 248 PANTHER PTHR38477:SF1 1 238 3.1E-88 T 16-09-2016 BER92_RS10580 242d63051960493a25d58416115524c5 248 PANTHER PTHR38477 1 238 3.1E-88 T 16-09-2016 BER92_RS03650 28af81ae3c1b11112654c7edb3e09d61 179 PIRSF PIRSF016481 3 178 2.4E-59 T 16-09-2016 IPR007446 Pilus assembly protein PilP BER92_RS03650 28af81ae3c1b11112654c7edb3e09d61 179 Pfam PF04351 Pilus assembly protein, PilP 34 174 5.8E-46 T 16-09-2016 IPR007446 Pilus assembly protein PilP BER92_RS00870 29167f296958748d3589cba78c2f5489 169 Pfam PF04985 Phage tail tube protein FII 4 168 1.6E-65 T 16-09-2016 IPR006498 Tail tube protein BER92_RS00870 29167f296958748d3589cba78c2f5489 169 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 168 2.2E-59 T 16-09-2016 IPR006498 Tail tube protein BER92_RS00870 29167f296958748d3589cba78c2f5489 169 PANTHER PTHR35861:SF2 1 169 1.2E-86 T 16-09-2016 BER92_RS00870 29167f296958748d3589cba78c2f5489 169 PANTHER PTHR35861 1 169 1.2E-86 T 16-09-2016 BER92_RS06345 c90a1c3df74e41d6bf3fd4c96cfeccee 218 Pfam PF13489 Methyltransferase domain 48 142 8.2E-7 T 16-09-2016 BER92_RS06345 c90a1c3df74e41d6bf3fd4c96cfeccee 218 SUPERFAMILY SSF53335 21 197 4.75E-17 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS06345 c90a1c3df74e41d6bf3fd4c96cfeccee 218 Gene3D G3DSA:3.40.50.150 17 154 6.3E-10 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS09930 1769415d60e0839051585535e1460b17 359 Pfam PF15584 Immunity protein 72 196 289 2.9E-16 T 16-09-2016 IPR028966 Immunity protein 72 BER92_RS09930 1769415d60e0839051585535e1460b17 359 Pfam PF15602 Immunity protein 71 11 165 1.2E-43 T 16-09-2016 IPR028950 Immunity protein 71 BER92_RS12920 0b23aad90415d344c08c87c0ec7b9141 211 Pfam PF09483 Type III secretion protein (HpaP) 25 210 1.9E-45 T 16-09-2016 IPR013390 Type III secretion protein HpaP BER92_RS12220 decd5ee6d2ef34059b863d2eeaad3e54 280 Pfam PF10099 Anti-sigma-K factor rskA 66 271 1.4E-24 T 16-09-2016 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 BER92_RS07210 cc4bfc2fbeaeed6587d7beb966d224b1 290 Pfam PF11231 Protein of unknown function (DUF3034) 33 287 9.6E-104 T 16-09-2016 IPR021393 Protein of unknown function DUF3034 BER92_RS12825 73f5cf4e9ecb8f7b48501c770949a14a 203 Pfam PF06197 Protein of unknown function (DUF998) 14 195 2.7E-13 T 16-09-2016 IPR009339 Protein of unknown function DUF998 BER92_RS01395 3f397d02a433e6ff6ffa2971701a6e1b 87 Gene3D G3DSA:1.10.1740.10 31 71 1.4E-4 T 16-09-2016 BER92_RS12620 eaf255d70996c33b893f7cec31e0f6fb 133 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 84 2.7E-26 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS12620 eaf255d70996c33b893f7cec31e0f6fb 133 PANTHER PTHR30007:SF0 4 129 5.7E-25 T 16-09-2016 BER92_RS12620 eaf255d70996c33b893f7cec31e0f6fb 133 PANTHER PTHR30007 4 129 5.7E-25 T 16-09-2016 BER92_RS07350 eaf255d70996c33b893f7cec31e0f6fb 133 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 84 2.7E-26 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS07350 eaf255d70996c33b893f7cec31e0f6fb 133 PANTHER PTHR30007:SF0 4 129 5.7E-25 T 16-09-2016 BER92_RS07350 eaf255d70996c33b893f7cec31e0f6fb 133 PANTHER PTHR30007 4 129 5.7E-25 T 16-09-2016 BER92_RS18630 eaf255d70996c33b893f7cec31e0f6fb 133 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 84 2.7E-26 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS18630 eaf255d70996c33b893f7cec31e0f6fb 133 PANTHER PTHR30007:SF0 4 129 5.7E-25 T 16-09-2016 BER92_RS18630 eaf255d70996c33b893f7cec31e0f6fb 133 PANTHER PTHR30007 4 129 5.7E-25 T 16-09-2016 BER92_RS16120 7e1e5ca9363addd2f971dad42f2ce0a1 183 SUPERFAMILY SSF55103 23 165 3.07E-5 T 16-09-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BER92_RS13600 edb6522a7dfa70eb7f03fb4e45acf37b 370 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 38 273 5.0E-60 T 16-09-2016 IPR018642 Protein of unknown function DUF2066 BER92_RS13015 e344bb386aee28d4336a8465e1d9d32d 124 PANTHER PTHR30007:SF0 1 118 3.8E-19 T 16-09-2016 BER92_RS13015 e344bb386aee28d4336a8465e1d9d32d 124 PANTHER PTHR30007 1 118 3.8E-19 T 16-09-2016 BER92_RS13015 e344bb386aee28d4336a8465e1d9d32d 124 Pfam PF01609 Transposase DDE domain 3 114 1.2E-10 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS10485 4ed05b8a1d29884d14491e28a18dc6bc 678 PANTHER PTHR35243:SF8 541 664 6.7E-49 T 16-09-2016 BER92_RS10485 4ed05b8a1d29884d14491e28a18dc6bc 678 PANTHER PTHR35243 541 664 6.7E-49 T 16-09-2016 BER92_RS12385 f12227058843b4c773906f3c7225bb4d 147 PIRSF PIRSF000714 15 147 4.1E-48 T 16-09-2016 IPR026026 Histidine triad hydrolase, Hint-type BER92_RS12385 f12227058843b4c773906f3c7225bb4d 147 SUPERFAMILY SSF54197 19 146 8.93E-28 T 16-09-2016 IPR011146 HIT-like domain GO:0003824 BER92_RS12385 f12227058843b4c773906f3c7225bb4d 147 Pfam PF01230 HIT domain 24 111 3.2E-8 T 16-09-2016 IPR001310 Histidine triad (HIT) protein BER92_RS12385 f12227058843b4c773906f3c7225bb4d 147 Gene3D G3DSA:3.30.428.10 16 146 2.5E-26 T 16-09-2016 IPR011146 HIT-like domain GO:0003824 BER92_RS08815 dba28fc6acbb8bb6bd2ff319f7ba6fd3 91 Pfam PF01609 Transposase DDE domain 11 90 1.1E-14 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS00500 512ef2582b0ecec06ef17a89754ad309 64 Pfam PF05598 Transposase domain (DUF772) 1 50 5.8E-9 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS11830 f4105a26fd0fb9fbfbabe9dbf4795321 455 PANTHER PTHR33803:SF1 1 455 0.0 T 16-09-2016 BER92_RS11830 f4105a26fd0fb9fbfbabe9dbf4795321 455 Pfam PF01609 Transposase DDE domain 284 421 1.3E-7 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11830 f4105a26fd0fb9fbfbabe9dbf4795321 455 PANTHER PTHR33803 1 455 0.0 T 16-09-2016 BER92_RS11830 f4105a26fd0fb9fbfbabe9dbf4795321 455 Pfam PF05598 Transposase domain (DUF772) 59 133 8.8E-18 T 16-09-2016 IPR008490 Transposase InsH, N-terminal BER92_RS02205 9762c88cef5dc12485f46579598b502c 112 Gene3D G3DSA:3.40.30.10 2 54 3.4E-6 T 16-09-2016 IPR012336 Thioredoxin-like fold BER92_RS02205 9762c88cef5dc12485f46579598b502c 112 Gene3D G3DSA:1.20.1050.10 55 111 1.8E-9 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS02205 9762c88cef5dc12485f46579598b502c 112 SUPERFAMILY SSF47616 26 110 4.21E-10 T 16-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like BER92_RS08325 418e1edcc362a38075ee3d2492c95ff5 317 Pfam PF07920 Protein of unknown function (DUF1684) 174 310 4.3E-41 T 16-09-2016 IPR012467 Protein of unknown function DUF1684 BER92_RS08325 418e1edcc362a38075ee3d2492c95ff5 317 PANTHER PTHR41913:SF1 10 316 8.0E-70 T 16-09-2016 BER92_RS08325 418e1edcc362a38075ee3d2492c95ff5 317 PANTHER PTHR41913 10 316 8.0E-70 T 16-09-2016 BER92_RS09020 05f14bc5fdf9803aa0432d775943f888 101 Pfam PF06305 Protein of unknown function (DUF1049) 23 79 6.5E-8 T 16-09-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 BER92_RS11515 eaf666f3191d23e327a24448d98efe28 215 PANTHER PTHR30625:SF0 1 197 4.7E-48 T 16-09-2016 BER92_RS11515 eaf666f3191d23e327a24448d98efe28 215 PANTHER PTHR30625 1 197 4.7E-48 T 16-09-2016 BER92_RS11515 eaf666f3191d23e327a24448d98efe28 215 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 187 2.4E-29 T 16-09-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 BER92_RS02620 e59354253d85604d45d9f625e79c90a7 266 Pfam PF04338 Protein of unknown function, DUF481 47 265 7.1E-62 T 16-09-2016 IPR007433 Protein of unknown function DUF481 BER92_RS12150 362a0e1f22e2cd878fe507ae584b9cd0 224 PANTHER PTHR31876 10 224 4.6E-61 T 16-09-2016 BER92_RS12150 362a0e1f22e2cd878fe507ae584b9cd0 224 Pfam PF04367 Protein of unknown function (DUF502) 80 180 6.1E-27 T 16-09-2016 IPR007462 Protein of unknown function DUF502 BER92_RS16290 dbceb3635bf4bf6dcfa7e4f78b6fa8d9 161 Pfam PF11906 Protein of unknown function (DUF3426) 16 160 3.0E-34 T 16-09-2016 IPR021834 Protein of unknown function DUF3426 BER92_RS14980 c356615dfc807f1c87ee58bf483dd72a 393 SUPERFAMILY SSF55961 26 181 1.21E-6 T 16-09-2016 BER92_RS14975 b1bd2f6b7f848546ed4e1722f10c12eb 123 Pfam PF04241 Protein of unknown function (DUF423) 28 106 5.4E-9 T 16-09-2016 IPR006696 Protein of unknown function DUF423 BER92_RS14755 fae7579a9dc22a454ce3cff0cff0f9c7 116 Gene3D G3DSA:3.30.450.40 20 94 2.7E-4 T 16-09-2016 IPR029016 GAF domain-like BER92_RS14755 fae7579a9dc22a454ce3cff0cff0f9c7 116 SUPERFAMILY SSF55781 12 78 7.06E-5 T 16-09-2016 IPR029016 GAF domain-like BER92_RS05970 dbb915775d9bbb440328d7f6be1bd772 89 Pfam PF01609 Transposase DDE domain 1 73 7.1E-6 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS13480 6e7e6cd76062875d4a8add9225b13a9b 198 Pfam PF07273 Protein of unknown function (DUF1439) 55 158 2.3E-7 T 16-09-2016 IPR010835 Protein of unknown function DUF1439 BER92_RS14780 9f261f8049d5486c03d1d55291383a4c 87 Pfam PF05656 Protein of unknown function (DUF805) 13 80 4.4E-6 T 16-09-2016 IPR008523 Protein of unknown function DUF805 GO:0016021 BER92_RS05485 3d526f1774e0526fed47eedf60d654ed 374 Pfam PF13271 Domain of unknown function (DUF4062) 2 83 7.3E-18 T 16-09-2016 IPR025139 Domain of unknown function DUF4062 BER92_RS01325 e40c51ac1e1257192da9685e1eefbe00 302 PANTHER PTHR22911:SF41 8 88 2.0E-23 T 16-09-2016 BER92_RS01325 e40c51ac1e1257192da9685e1eefbe00 302 PANTHER PTHR22911 8 88 2.0E-23 T 16-09-2016 BER92_RS02855 f9ab135821065592392dcfd5fd901780 241 Pfam PF10001 Uncharacterized protein conserved in bacteria (DUF2242) 54 173 1.9E-48 T 16-09-2016 IPR018718 Protein of unknown function DUF2242 BER92_RS10780 500efebeac778fd2f2a75f383767112e 651 Pfam PF05787 Bacterial protein of unknown function (DUF839) 213 589 8.6E-16 T 16-09-2016 IPR008557 Protein of unknown function DUF839 BER92_RS03260 31b3f52acc083d924c1c910b69e27aca 444 Pfam PF04932 O-Antigen ligase 221 372 1.4E-22 T 16-09-2016 IPR007016 O-antigen ligase-related BER92_RS12280 1e8ea077ac648b9648964b113ffa1eb1 60 Pfam PF09791 Oxidoreductase-like protein, N-terminal 13 52 3.4E-12 T 16-09-2016 IPR019180 Oxidoreductase-like, N-terminal BER92_RS04820 2a1c5c3e53f6639e0ba8441895b3315f 347 Pfam PF01728 FtsJ-like methyltransferase 182 274 1.9E-8 T 16-09-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 BER92_RS04820 2a1c5c3e53f6639e0ba8441895b3315f 347 PIRSF PIRSF028774 1 347 6.4E-158 T 16-09-2016 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 BER92_RS04820 2a1c5c3e53f6639e0ba8441895b3315f 347 SUPERFAMILY SSF53335 180 291 7.28E-17 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS04820 2a1c5c3e53f6639e0ba8441895b3315f 347 PANTHER PTHR37524 1 346 1.7E-168 T 16-09-2016 BER92_RS04820 2a1c5c3e53f6639e0ba8441895b3315f 347 PANTHER PTHR37524:SF2 1 346 1.7E-168 T 16-09-2016 BER92_RS04820 2a1c5c3e53f6639e0ba8441895b3315f 347 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 347 76.165 T 16-09-2016 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 BER92_RS04820 2a1c5c3e53f6639e0ba8441895b3315f 347 Gene3D G3DSA:3.40.50.150 180 280 4.4E-17 T 16-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER92_RS09815 84a9567973f8deb9ba413836ced087ff 274 Pfam PF13503 Domain of unknown function (DUF4123) 5 124 1.4E-9 T 16-09-2016 IPR025391 Domain of unknown function DUF4123 BER92_RS01900 35c2b6b0adcbafb42a04fdb0fe663dbe 358 Pfam PF14305 TupA-like ATPgrasp 107 341 1.8E-33 T 16-09-2016 IPR029465 TupA-like ATPgrasp protein BER92_RS11295 360e6bb3ead23bdd09c969f19fcb767e 76 Pfam PF11745 Protein of unknown function (DUF3304) 14 43 6.7E-5 T 16-09-2016 IPR021733 Protein of unknown function DUF3304 BER92_RS03975 ee767aa9d3bf111ee5855963bbb47c6c 171 Pfam PF01609 Transposase DDE domain 11 54 1.5E-6 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS14690 5959b8c213855749fc7880506da31d90 83 Pfam PF05406 WGR domain 6 73 6.6E-5 T 16-09-2016 IPR008893 WGR domain BER92_RS14690 5959b8c213855749fc7880506da31d90 83 SUPERFAMILY SSF142921 4 73 9.29E-7 T 16-09-2016 IPR008893 WGR domain BER92_RS07855 163db55b6df5f070e94cf8c49c670147 177 Pfam PF06114 Domain of unknown function (DUF955) 46 169 8.9E-24 T 16-09-2016 IPR010359 HTH domain, IrrE-type BER92_RS17260 0674a81d3a543d2f13663d1c6f5e1edd 422 Pfam PF12040 Domain of unknown function (DUF3526) 274 415 1.7E-37 T 16-09-2016 IPR021913 Protein of unknown function DUF3526 BER92_RS11300 437af9f1eef13fb1621d5b29b116aafa 297 Pfam PF13503 Domain of unknown function (DUF4123) 4 125 1.5E-18 T 16-09-2016 IPR025391 Domain of unknown function DUF4123 BER92_RS09660 ddded2acc94e47b900a68d1481e0e1a8 392 Gene3D G3DSA:3.40.50.300 3 171 1.2E-39 T 16-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER92_RS09660 ddded2acc94e47b900a68d1481e0e1a8 392 Pfam PF05707 Zonular occludens toxin (Zot) 3 170 1.3E-21 T 16-09-2016 IPR008900 Zona occludens toxin BER92_RS15520 cf7a2eeaeb15d0c77b77cf58b03c132c 131 Pfam PF13511 Domain of unknown function (DUF4124) 10 65 2.0E-16 T 16-09-2016 IPR025392 Domain of unknown function DUF4124 BER92_RS11125 09ff7ab10c47966825de9195dcabcaac 351 Pfam PF11740 Plasmid replication region DNA-binding N-term 8 119 7.5E-24 T 16-09-2016 IPR021104 KfrA, N-terminal DNA-binding domain BER92_RS15880 eab654ad801e0d43db89e388bcd7dbbc 127 Pfam PF04138 GtrA-like protein 9 126 1.4E-15 T 16-09-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 BER92_RS05400 620f81062983e6653d87e5a3ea642aaa 333 PANTHER PTHR35243 4 333 5.0E-263 T 16-09-2016 BER92_RS05400 620f81062983e6653d87e5a3ea642aaa 333 PANTHER PTHR35243:SF7 4 333 5.0E-263 T 16-09-2016 BER92_RS14730 baf3a456525968606c22701920823599 116 PANTHER PTHR35243:SF13 1 116 2.7E-30 T 16-09-2016 BER92_RS14730 baf3a456525968606c22701920823599 116 PANTHER PTHR35243 1 116 2.7E-30 T 16-09-2016 BER92_RS13105 925e1cad4ecb6f0cee6d91ac27fe366b 171 Pfam PF13211 Protein of unknown function (DUF4019) 58 164 1.8E-28 T 16-09-2016 IPR025091 Protein of unknown function DUF4019 BER92_RS04010 7a961ea5a35de56e1a2c86d968e4f1c7 402 Pfam PF14486 Domain of unknown function (DUF4432) 63 367 8.7E-103 T 16-09-2016 IPR027839 Protein of unknown function DUF4432 BER92_RS00135 ca4fba01c1b4910976c78287230d49e8 148 Pfam PF13670 Peptidase propeptide and YPEB domain 8 85 3.1E-14 T 16-09-2016 IPR025711 PepSY domain BER92_RS00135 ca4fba01c1b4910976c78287230d49e8 148 Pfam PF13670 Peptidase propeptide and YPEB domain 90 144 1.2E-7 T 16-09-2016 IPR025711 PepSY domain BER92_RS00740 74491a0e7ddcc2b2cbc8e735f68a22f8 163 Pfam PF11745 Protein of unknown function (DUF3304) 31 139 9.6E-12 T 16-09-2016 IPR021733 Protein of unknown function DUF3304 BER92_RS07565 34025e1df796686b7feb1f1547575280 148 PANTHER PTHR33803 1 135 1.2E-39 T 16-09-2016 BER92_RS07565 34025e1df796686b7feb1f1547575280 148 PANTHER PTHR33803:SF1 1 135 1.2E-39 T 16-09-2016 BER92_RS01465 4ef604d87ced3e9b373bfeb7d81b7e6b 105 Pfam PF01609 Transposase DDE domain 11 103 3.0E-18 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11285 16e61834de2e65f9b3fa00b4007145bd 440 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 78 189 2.1E-18 T 16-09-2016 IPR018712 Domain of unknown function DUF2235 BER92_RS16345 cea57f405eece0054c99f66a6b10ddde 136 Pfam PF10825 Protein of unknown function (DUF2752) 40 84 6.2E-18 T 16-09-2016 IPR021215 Protein of unknown function DUF2752 BER92_RS06125 3ab30cb4bd7f24a37c9ddb397a23e552 158 Pfam PF03168 Late embryogenesis abundant protein 50 141 1.4E-7 T 16-09-2016 IPR004864 Late embryogenesis abundant protein, LEA-14 BER92_RS06125 3ab30cb4bd7f24a37c9ddb397a23e552 158 SUPERFAMILY SSF117070 16 128 4.05E-7 T 16-09-2016 BER92_RS00735 092d42c1391306516e26134882b5acb4 667 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 282 398 8.6E-11 T 16-09-2016 IPR018712 Domain of unknown function DUF2235 BER92_RS10680 735d71312a6399cbd6467b3daf9bdbc4 94 Pfam PF13828 Domain of unknown function (DUF4190) 11 74 9.6E-21 T 16-09-2016 IPR025241 Domain of unknown function DUF4190 BER92_RS01720 c74cda065933577c62a1bd645c3891d2 145 SUPERFAMILY SSF54637 4 140 3.23E-12 T 16-09-2016 IPR029069 HotDog domain BER92_RS07615 55aa246a25cd8867e0b8b71771af5daa 921 Pfam PF05819 NolX protein 36 738 0.0 T 16-09-2016 IPR008718 NolX GO:0009877 BER92_RS13200 64fd2d86bcc298efd16a0340f3cba1f7 363 Pfam PF12275 Protein of unknown function (DUF3616) 24 358 4.5E-111 T 16-09-2016 IPR022060 Protein of unknown function DUF3616 BER92_RS02210 4386a0dcdd0d2de3a4cefce9f5eaf2bf 153 Pfam PF07486 Cell Wall Hydrolase 35 142 1.4E-17 T 16-09-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 BER92_RS18275 87249183f63f884fcb24e0eea14a3905 241 Pfam PF02104 SURF1 family 16 219 6.0E-22 T 16-09-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 BER92_RS03675 9aaae3beba519c604282fc1224c169dd 153 Pfam PF01609 Transposase DDE domain 1 40 1.0E-5 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS11260 d2c484a9b6b9e904f00346147e162cfb 192 Pfam PF11745 Protein of unknown function (DUF3304) 31 141 9.1E-29 T 16-09-2016 IPR021733 Protein of unknown function DUF3304 BER92_RS18920 2b43200988d1d217b2d65d6e17d2432f 76 Pfam PF12760 Transposase zinc-ribbon domain 2 38 1.6E-6 T 16-09-2016 IPR024442 Transposase, zinc-ribbon BER92_RS10430 9a50fea93cd86b8d61da0e557c0b6673 97 Gene3D G3DSA:1.10.1660.10 17 81 9.4E-4 T 16-09-2016 BER92_RS03330 1620143dd23be535fc27aebbe206a3ac 85 Pfam PF13710 ACT domain 12 73 7.6E-19 T 16-09-2016 BER92_RS03330 1620143dd23be535fc27aebbe206a3ac 85 Gene3D G3DSA:3.30.70.260 1 74 7.1E-8 T 16-09-2016 BER92_RS13230 15e924de7bd50e4ec2de31e85cd9ab57 180 SUPERFAMILY SSF55729 24 172 4.43E-18 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS13230 15e924de7bd50e4ec2de31e85cd9ab57 180 Gene3D G3DSA:3.40.630.30 16 162 3.1E-17 T 16-09-2016 IPR016181 Acyl-CoA N-acyltransferase BER92_RS13230 15e924de7bd50e4ec2de31e85cd9ab57 180 Pfam PF00583 Acetyltransferase (GNAT) family 87 161 9.0E-10 T 16-09-2016 IPR000182 GNAT domain GO:0008080 BER92_RS00410 c74e9fd45b79cf980290b5a1392ce34c 67 Pfam PF04325 Protein of unknown function (DUF465) 14 58 1.6E-13 T 16-09-2016 IPR007420 Protein of unknown function DUF465 BER92_RS04985 8ff1294f320e324de20c102d385d042f 114 Pfam PF09842 Predicted membrane protein (DUF2069) 10 96 4.8E-8 T 16-09-2016 IPR018643 Protein of unknown function DUF2069, membrane BER92_RS15570 abca00f8b3e6241ccd691087f5f82b1e 941 SUPERFAMILY SSF56784 349 539 4.46E-11 T 16-09-2016 IPR023214 HAD-like domain BER92_RS15570 abca00f8b3e6241ccd691087f5f82b1e 941 Pfam PF05045 Rhamnan synthesis protein F 77 308 4.4E-50 T 16-09-2016 IPR007739 Rhamnan synthesis F BER92_RS15570 abca00f8b3e6241ccd691087f5f82b1e 941 Gene3D G3DSA:3.40.50.1000 348 364 4.0E-11 T 16-09-2016 IPR023214 HAD-like domain BER92_RS15570 abca00f8b3e6241ccd691087f5f82b1e 941 Gene3D G3DSA:3.40.50.1000 441 533 4.0E-11 T 16-09-2016 IPR023214 HAD-like domain BER92_RS00480 ab4727a2ab80b5324d2520a13250d7e4 179 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 82 2.2E-18 T 16-09-2016 IPR025161 Putative transposase IS4/IS5 family BER92_RS11270 07dc5cbd9b27e4a5cc73f45a1393e037 87 Pfam PF11745 Protein of unknown function (DUF3304) 9 39 2.0E-6 T 16-09-2016 IPR021733 Protein of unknown function DUF3304 BER92_RS05310 f5a885dd9ee73dbcb85a642203956191 89 Pfam PF01609 Transposase DDE domain 1 64 1.6E-5 T 16-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BER92_RS09635 0fe195f749ad2f0a74db67cd3766dad3 353 Pfam PF02486 Replication initiation factor 146 293 5.0E-25 T 16-09-2016 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 BER92_RS00620 a99f6c1ea682a98a789589df2f5eebe7 76 Gene3D G3DSA:1.10.260.40 41 74 1.6E-5 T 16-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 BER92_RS00800 7f57ea2bda826e52a98f8a0df16697a7 69 Pfam PF05489 Phage Tail Protein X 1 60 5.5E-28 T 16-09-2016 IPR008861 Phage Tail Protein X-like BER92_RS18280 4b52bdd7897af4f38efa5fdab6fed87e 72 Pfam PF11137 Protein of unknown function (DUF2909) 8 65 1.2E-22 T 16-09-2016 IPR021313 Protein of unknown function DUF2909 BER92_RS04380 413e30a156fcc30c601869e8a223d81d 212 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 16-09-2016 IPR012902 Prokaryotic N-terminal methylation site BER92_RS02005 9f281b0a0da6164a92a910e959c91199 132 Pfam PF10116 Protein required for attachment to host cells 10 131 4.1E-24 T 16-09-2016 IPR019291 Host attachment protein BER92_RS14260 bb7145775c42ac3d7797dbae48230fd9 197 SMART SM00974 24 116 9.6E-9 T 16-09-2016 IPR018306 Bacteriophage T5, Orf172 DNA-binding BER92_RS05455 e14a7c26237f9ca8e976e65b1e556fdb 308 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 10 273 1.4E-42 T 16-09-2016 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system BER92_RS14195 e2a2d4958ecd661f9ee833a690c86b15 164 Pfam PF12582 Protein of unknown function (DUF3757) 21 159 2.6E-10 T 16-09-2016 IPR022231 Protein of unknown function DUF3757 BER92_RS01905 b86e9f90d88b08101f04ace4ee20056d 118 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 63 113 3.1E-19 T 16-09-2016 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 BER92_RS04400 96ae81e43fcb38305f8fdf9bfd170ff1 262 ProDom PD046566 PATHWAY N GENERAL SECRETION PRECURSOR SIGNAL MEMBRANE XPSN TRANSMEMBRANE INNER 1 233 2.0E-76 T 16-09-2016 BER92_RS11280 2805a31e101301eee7066383d9eac25e 318 Pfam PF13503 Domain of unknown function (DUF4123) 33 155 4.9E-7 T 16-09-2016 IPR025391 Domain of unknown function DUF4123 BER92_RS09670 c792a1503cc16c83c51033b80f63e3b4 102 Pfam PF12375 Phage protein 15 55 7.2E-6 T 16-09-2016 IPR021077 Bacteriophage phi-Lf, Orf112 BER92_RS17895 94a1fb3d16fd4c858e401447e5917f8d 208 Pfam PF13548 Domain of unknown function (DUF4126) 9 176 8.3E-45 T 16-09-2016 IPR025196 Domain of unknown function DUF4126