locus-tag class description BER93_RS00005 IPR010921 Trp repressor/replication initiator BER93_RS00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00005 IPR038454 DnaA, N-terminal domain superfamily BER93_RS00005 IPR024633 DnaA N-terminal domain BER93_RS00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal BER93_RS00005 IPR013317 Chromosomal replication initiator protein DnaA BER93_RS00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site BER93_RS00005 IPR020591 Chromosomal replication control, initiator DnaA-like BER93_RS00005 IPR001957 Chromosomal replication control, initiator DnaA BER93_RS00005 IPR003593 AAA+ ATPase domain BER93_RS00010 IPR022637 DNA polymerase III, beta sliding clamp, central BER93_RS00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal BER93_RS00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal BER93_RS00010 IPR001001 DNA polymerase III, beta sliding clamp BER93_RS00020 IPR001238 DNA-binding, RecF BER93_RS00020 IPR018078 DNA-binding, RecF, conserved site BER93_RS00020 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00020 IPR003395 RecF/RecN/SMC, N-terminal BER93_RS00020 IPR042174 DNA-binding RecF, domain 2 BER93_RS00025 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS00025 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS00025 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS00025 IPR001241 DNA topoisomerase, type IIA BER93_RS00025 IPR013760 DNA topoisomerase, type IIA-like domain superfamily BER93_RS00025 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 BER93_RS00025 IPR041423 DNA gyrase subunit B insert domain BER93_RS00025 IPR018522 DNA topoisomerase, type IIA, conserved site BER93_RS00025 IPR006171 TOPRIM domain BER93_RS00025 IPR034160 DNA gyrase subunit B, TOPRIM domain BER93_RS00025 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal BER93_RS00025 IPR011557 DNA gyrase, subunit B BER93_RS00025 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS00025 IPR002288 DNA gyrase B subunit, C-terminal BER93_RS00035 IPR001915 Peptidase M48 BER93_RS00045 IPR037682 TonB, C-terminal BER93_RS00045 IPR006260 TonB/TolA, C-terminal BER93_RS00050 IPR002898 MotA/TolQ/ExbB proton channel BER93_RS00055 IPR003400 Biopolymer transport protein ExbD/TolR BER93_RS00060 IPR003400 Biopolymer transport protein ExbD/TolR BER93_RS00075 IPR013785 Aldolase-type TIM barrel BER93_RS00075 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ BER93_RS00075 IPR036130 Pyridoxine 5'-phosphate synthase BER93_RS00085 IPR027379 Cardiolipin synthase N-terminal BER93_RS00085 IPR030874 Cardiolipin synthase, Firmicutes-type BER93_RS00085 IPR025202 Phospholipase D-like domain BER93_RS00085 IPR001736 Phospholipase D/Transphosphatidylase BER93_RS00085 IPR022924 Cardiolipin synthase BER93_RS00100 IPR042117 OMPP1/FadL/TodX superfamily BER93_RS00100 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) BER93_RS00115 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER93_RS00115 IPR036291 NAD(P)-binding domain superfamily BER93_RS00115 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BER93_RS00115 IPR002912 ACT domain BER93_RS00115 IPR006236 D-3-phosphoglycerate dehydrogenase BER93_RS00115 IPR029009 Allosteric substrate binding domain superfamily BER93_RS00115 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_RS00115 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain BER93_RS00120 IPR001478 PDZ domain BER93_RS00120 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS00120 IPR004447 C-terminal-processing peptidase S41A BER93_RS00120 IPR005151 Tail specific protease BER93_RS00120 IPR036034 PDZ superfamily BER93_RS00125 IPR011055 Duplicated hybrid motif BER93_RS00125 IPR016047 Peptidase M23 BER93_RS00130 IPR007484 Peptidase M28 BER93_RS00145 IPR006094 FAD linked oxidase, N-terminal BER93_RS00145 IPR004490 Glycolate oxidase subunit GlcD BER93_RS00145 IPR004113 FAD-linked oxidase, C-terminal BER93_RS00145 IPR016164 FAD-linked oxidase-like, C-terminal BER93_RS00145 IPR036318 FAD-binding, type PCMH-like superfamily BER93_RS00145 IPR016166 FAD-binding domain, PCMH-type BER93_RS00145 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BER93_RS00160 IPR036397 Ribonuclease H superfamily BER93_RS00160 IPR001598 Transposase, IS30, conserved site BER93_RS00160 IPR001584 Integrase, catalytic core BER93_RS00160 IPR009057 Homeobox-like domain superfamily BER93_RS00160 IPR012337 Ribonuclease H-like superfamily BER93_RS00165 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS00165 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS00165 IPR036291 NAD(P)-binding domain superfamily BER93_RS00175 IPR004635 Peptidase S49, SppA BER93_RS00175 IPR004634 Peptidase S49, protease IV BER93_RS00175 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS00175 IPR002142 Peptidase S49 BER93_RS00175 IPR033854 Signal peptide peptidase A BER93_RS00180 IPR002528 Multi antimicrobial extrusion protein BER93_RS00200 IPR011545 DEAD/DEAH box helicase domain BER93_RS00200 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS00200 IPR001650 Helicase, C-terminal BER93_RS00200 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00200 IPR005259 Primosomal protein N' BER93_RS00200 IPR041222 Primosomal protein N', 3' DNA-binding domain BER93_RS00200 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily BER93_RS00200 IPR041236 Primosomal protein N, C-terminal domain BER93_RS00200 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain BER93_RS00215 IPR007627 RNA polymerase sigma-70 region 2 BER93_RS00215 IPR000943 RNA polymerase sigma-70 BER93_RS00215 IPR013325 RNA polymerase sigma factor, region 2 BER93_RS00215 IPR007630 RNA polymerase sigma-70 region 4 BER93_RS00215 IPR014284 RNA polymerase sigma-70 like domain BER93_RS00215 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria BER93_RS00215 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS00215 IPR013324 RNA polymerase sigma factor, region 3/4-like BER93_RS00220 IPR005122 Uracil-DNA glycosylase-like BER93_RS00220 IPR036895 Uracil-DNA glycosylase-like domain superfamily BER93_RS00220 IPR002043 Uracil-DNA glycosylase family 1 BER93_RS00220 IPR018085 Uracil-DNA glycosylase, active site BER93_RS00225 IPR001789 Signal transduction response regulator, receiver domain BER93_RS00225 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase BER93_RS00225 IPR011006 CheY-like superfamily BER93_RS00225 IPR035909 Methylesterase CheB, C-terminal BER93_RS00225 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type BER93_RS00230 IPR004513 Cell division protein FtsX BER93_RS00230 IPR040690 FtsX, extracellular domain BER93_RS00235 IPR003439 ABC transporter-like BER93_RS00235 IPR017871 ABC transporter, conserved site BER93_RS00235 IPR003593 AAA+ ATPase domain BER93_RS00235 IPR005286 Cell division protein FtsE, ATP-binding BER93_RS00235 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00240 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS00240 IPR001650 Helicase, C-terminal BER93_RS00240 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00240 IPR022077 ATP-dependent RNA helicase RhlB BER93_RS00240 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER93_RS00240 IPR023554 ATP-dependent RNA helicase RhlB type BER93_RS00240 IPR014014 RNA helicase, DEAD-box type, Q motif BER93_RS00240 IPR011545 DEAD/DEAH box helicase domain BER93_RS00245 IPR013766 Thioredoxin domain BER93_RS00245 IPR005746 Thioredoxin BER93_RS00245 IPR036249 Thioredoxin-like superfamily BER93_RS00245 IPR017937 Thioredoxin, conserved site BER93_RS00250 IPR041703 Transcription termination factor Rho, ATP binding domain BER93_RS00250 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00250 IPR003593 AAA+ ATPase domain BER93_RS00250 IPR011129 Cold shock domain BER93_RS00250 IPR004665 Transcription termination factor Rho BER93_RS00250 IPR011113 Rho termination factor, RNA-binding domain BER93_RS00250 IPR011112 Rho termination factor, N-terminal BER93_RS00250 IPR012340 Nucleic acid-binding, OB-fold BER93_RS00250 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_RS00255 IPR024473 Transposase, IS4, N-terminal BER93_RS00255 IPR002559 Transposase, IS4-like BER93_RS00255 IPR012337 Ribonuclease H-like superfamily BER93_RS00260 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric BER93_RS00280 IPR014004 Transport-associated and nodulation domain, bacteria BER93_RS00280 IPR036779 LysM domain superfamily BER93_RS00280 IPR018392 LysM domain BER93_RS00280 IPR007055 BON domain BER93_RS00285 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal BER93_RS00285 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 BER93_RS00285 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF BER93_RS00295 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BER93_RS00295 IPR006143 RND efflux pump, membrane fusion protein BER93_RS00295 IPR022824 Multidrug resistance protein MdtA BER93_RS00300 IPR022831 Multidrug resistance protein MdtB BER93_RS00300 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS00300 IPR001036 Acriflavin resistance protein BER93_RS00305 IPR001036 Acriflavin resistance protein BER93_RS00305 IPR023931 Multidrug resistance protein MdtC BER93_RS00305 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS00320 IPR009770 Domain of unknown function DUF1338 BER93_RS00335 IPR011013 Galactose mutarotase-like domain superfamily BER93_RS00335 IPR023724 Glucan biosynthesis, MdoD BER93_RS00335 IPR014438 Glucan biosynthesis protein MdoG/MdoD BER93_RS00335 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal BER93_RS00335 IPR014718 Glycoside hydrolase-type carbohydrate-binding BER93_RS00335 IPR006311 Twin-arginine translocation pathway, signal sequence BER93_RS00335 IPR014756 Immunoglobulin E-set BER93_RS00335 IPR013783 Immunoglobulin-like fold BER93_RS00340 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00340 IPR001267 Thymidine kinase BER93_RS00345 IPR013986 DExx box DNA helicase domain superfamily BER93_RS00345 IPR034739 UvrD/AddA helicase, N-terminal BER93_RS00345 IPR014016 UvrD-like helicase, ATP-binding domain BER93_RS00345 IPR005752 ATP-dependent DNA helicase Rep BER93_RS00345 IPR000212 DNA helicase, UvrD/REP type BER93_RS00345 IPR014017 UvrD-like DNA helicase, C-terminal BER93_RS00345 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00375 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS00375 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS00375 IPR007432 Protein of unknown function DUF480 BER93_RS00380 IPR036412 HAD-like superfamily BER93_RS00380 IPR006423 5-nucleotidase lipoprotein e(P4) BER93_RS00380 IPR023214 HAD superfamily BER93_RS00380 IPR005519 Acid phosphatase, class B-like BER93_RS00400 IPR041728 GPAT/DHAPAT, acyltransferase domain BER93_RS00400 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB BER93_RS00400 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase BER93_RS00400 IPR002123 Phospholipid/glycerol acyltransferase BER93_RS00405 IPR020806 Polyketide synthase, phosphopantetheine-binding domain BER93_RS00405 IPR032821 Ketoacyl-synthetase, C-terminal extension BER93_RS00405 IPR009081 Phosphopantetheine binding ACP domain BER93_RS00405 IPR006162 Phosphopantetheine attachment site BER93_RS00405 IPR016039 Thiolase-like BER93_RS00405 IPR015083 Polyketide synthase, docking domain BER93_RS00405 IPR013968 Polyketide synthase, ketoreductase domain BER93_RS00405 IPR036736 ACP-like superfamily BER93_RS00405 IPR042104 Polyketide synthase, dehydratase domain superfamily BER93_RS00405 IPR020843 Polyketide synthase, enoylreductase domain BER93_RS00405 IPR014043 Acyl transferase BER93_RS00405 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BER93_RS00405 IPR013154 Alcohol dehydrogenase, N-terminal BER93_RS00405 IPR036347 Erythronolide synthase, docking domain superfamily BER93_RS00405 IPR015357 Erythronolide synthase, docking BER93_RS00405 IPR011032 GroES-like superfamily BER93_RS00405 IPR018201 Beta-ketoacyl synthase, active site BER93_RS00405 IPR001227 Acyl transferase domain superfamily BER93_RS00405 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_RS00405 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BER93_RS00405 IPR036291 NAD(P)-binding domain superfamily BER93_RS00405 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER93_RS00405 IPR020807 Polyketide synthase, dehydratase domain BER93_RS00405 IPR014031 Beta-ketoacyl synthase, C-terminal BER93_RS00455 IPR036397 Ribonuclease H superfamily BER93_RS00455 IPR025948 HTH-like domain BER93_RS00455 IPR012337 Ribonuclease H-like superfamily BER93_RS00455 IPR001584 Integrase, catalytic core BER93_RS00460 IPR002514 Transposase IS3/IS911family BER93_RS00460 IPR009057 Homeobox-like domain superfamily BER93_RS00465 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS00465 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS00465 IPR036291 NAD(P)-binding domain superfamily BER93_RS00480 IPR025161 Putative transposase IS4/IS5 family BER93_RS00485 IPR010694 Uncharacterised protein family VirK BER93_RS00510 IPR014014 RNA helicase, DEAD-box type, Q motif BER93_RS00510 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER93_RS00510 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00510 IPR001650 Helicase, C-terminal BER93_RS00510 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS00510 IPR028622 ATP-dependent RNA helicase RhlE BER93_RS00510 IPR011545 DEAD/DEAH box helicase domain BER93_RS00515 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily BER93_RS00515 IPR000089 Biotin/lipoyl attachment BER93_RS00515 IPR036625 E3-binding domain superfamily BER93_RS00515 IPR004167 Peripheral subunit-binding domain BER93_RS00515 IPR011053 Single hybrid motif BER93_RS00515 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain BER93_RS00515 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER93_RS00525 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II BER93_RS00525 IPR029061 Thiamin diphosphate-binding fold BER93_RS00525 IPR005475 Transketolase-like, pyrimidine-binding domain BER93_RS00525 IPR033248 Transketolase, C-terminal domain BER93_RS00530 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha BER93_RS00530 IPR029061 Thiamin diphosphate-binding fold BER93_RS00530 IPR001017 Dehydrogenase, E1 component BER93_RS00535 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like BER93_RS00535 IPR004981 Tryptophan 2,3-dioxygenase BER93_RS00540 IPR020846 Major facilitator superfamily domain BER93_RS00540 IPR036259 MFS transporter superfamily BER93_RS00540 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site BER93_RS00540 IPR000109 Proton-dependent oligopeptide transporter family BER93_RS00540 IPR005279 Dipeptide/tripeptide permease BER93_RS00555 IPR000835 MarR-type HTH domain BER93_RS00555 IPR023187 Transcriptional regulator MarR-type, conserved site BER93_RS00555 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS00555 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS00560 IPR037523 Vicinal oxygen chelate (VOC) domain BER93_RS00560 IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal BER93_RS00560 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER93_RS00560 IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal BER93_RS00560 IPR005956 4-hydroxyphenylpyruvate dioxygenase BER93_RS00560 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BER93_RS00565 IPR011051 RmlC-like cupin domain superfamily BER93_RS00565 IPR014710 RmlC-like jelly roll fold BER93_RS00565 IPR022950 Homogentisate 1,2-dioxygenase, bacterial BER93_RS00565 IPR005708 Homogentisate 1,2-dioxygenase BER93_RS00590 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS00590 IPR013328 6-phosphogluconate dehydrogenase, domain 2 BER93_RS00590 IPR003710 Ketopantoate reductase ApbA/PanE BER93_RS00590 IPR013332 Ketopantoate reductase, N-terminal domain BER93_RS00590 IPR036291 NAD(P)-binding domain superfamily BER93_RS00590 IPR013752 Ketopantoate reductase, C-terminal domain BER93_RS00600 IPR000412 ABC-2 transporter BER93_RS00600 IPR013525 ABC-2 type transporter BER93_RS00605 IPR003439 ABC transporter-like BER93_RS00605 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00605 IPR003593 AAA+ ATPase domain BER93_RS00605 IPR017871 ABC transporter, conserved site BER93_RS00610 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BER93_RS00610 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase BER93_RS00610 IPR017927 FAD-binding domain, ferredoxin reductase-type BER93_RS00610 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain BER93_RS00610 IPR017938 Riboflavin synthase-like beta-barrel BER93_RS00610 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site BER93_RS00610 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain BER93_RS00610 IPR036010 2Fe-2S ferredoxin-like superfamily BER93_RS00610 IPR012675 Beta-grasp domain superfamily BER93_RS00610 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_RS00625 IPR003593 AAA+ ATPase domain BER93_RS00625 IPR017871 ABC transporter, conserved site BER93_RS00625 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS00625 IPR003439 ABC transporter-like BER93_RS00635 IPR037682 TonB, C-terminal BER93_RS00635 IPR003538 Gram-negative bacterial TonB protein BER93_RS00635 IPR006260 TonB/TolA, C-terminal BER93_RS00650 IPR010987 Glutathione S-transferase, C-terminal-like BER93_RS00650 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BER93_RS00650 IPR004045 Glutathione S-transferase, N-terminal BER93_RS00650 IPR004046 Glutathione S-transferase, C-terminal BER93_RS00650 IPR036249 Thioredoxin-like superfamily BER93_RS00655 IPR036397 Ribonuclease H superfamily BER93_RS00655 IPR025948 HTH-like domain BER93_RS00655 IPR001584 Integrase, catalytic core BER93_RS00655 IPR012337 Ribonuclease H-like superfamily BER93_RS00710 IPR006531 Gp5 N-terminal BER93_RS00710 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS00710 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS00710 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS00725 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_RS00725 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS00725 IPR006531 Gp5 N-terminal BER93_RS00725 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS00725 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS00725 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_RS00740 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS00740 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS00740 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS00740 IPR006531 Gp5 N-terminal BER93_RS00750 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS00750 IPR001091 Restriction/modification DNA-methylase BER93_RS00750 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_RS00750 IPR002941 DNA methylase N-4/N-6 BER93_RS00760 IPR030935 Phage portal protein PBSX family, Proteobacteria BER93_RS00760 IPR006430 Phage portal protein PBSX family BER93_RS00890 IPR008490 Transposase InsH, N-terminal BER93_RS00895 IPR008490 Transposase InsH, N-terminal BER93_RS00915 IPR009042 RNA polymerase sigma-70 region 1.2 BER93_RS00915 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS00915 IPR028630 RNA polymerase sigma factor RpoD BER93_RS00915 IPR000943 RNA polymerase sigma-70 BER93_RS00915 IPR014284 RNA polymerase sigma-70 like domain BER93_RS00915 IPR013324 RNA polymerase sigma factor, region 3/4-like BER93_RS00915 IPR012760 RNA polymerase sigma factor RpoD, C-terminal BER93_RS00915 IPR042189 Sigma-70 factor, region 1.1 superfamily BER93_RS00915 IPR013325 RNA polymerase sigma factor, region 2 BER93_RS00915 IPR007624 RNA polymerase sigma-70 region 3 BER93_RS00915 IPR007630 RNA polymerase sigma-70 region 4 BER93_RS00915 IPR007627 RNA polymerase sigma-70 region 2 BER93_RS00915 IPR007127 RNA polymerase sigma factor 70, region 1.1 BER93_RS00915 IPR007631 RNA polymerase sigma factor 70, non-essential domain BER93_RS00920 IPR003732 D-aminoacyl-tRNA deacylase DTD BER93_RS00920 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily BER93_RS00930 IPR016181 Acyl-CoA N-acyltransferase BER93_RS00930 IPR000182 GNAT domain BER93_RS00935 IPR032677 GTP cyclohydrolase II BER93_RS00935 IPR036144 RibA-like superfamily BER93_RS00935 IPR000926 GTP cyclohydrolase II, RibA BER93_RS00955 IPR001173 Glycosyltransferase 2-like BER93_RS00955 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS00965 IPR038731 Glycosyltransferase RgtA/B/C/D-like BER93_RS00970 IPR006027 NusB/RsmB/TIM44 BER93_RS00970 IPR035926 NusB-like superfamily BER93_RS00970 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS00970 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type BER93_RS00970 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site BER93_RS00970 IPR023267 RNA (C5-cytosine) methyltransferase BER93_RS00970 IPR004573 rRNA small subunit methyltransferase B BER93_RS00975 IPR005794 Methionyl-tRNA formyltransferase BER93_RS00975 IPR005793 Formyl transferase, C-terminal BER93_RS00975 IPR037022 Formyl transferase, C-terminal domain superfamily BER93_RS00975 IPR002376 Formyl transferase, N-terminal BER93_RS00975 IPR036477 Formyl transferase, N-terminal domain superfamily BER93_RS00975 IPR001555 Phosphoribosylglycinamide formyltransferase, active site BER93_RS00975 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain BER93_RS00975 IPR011034 Formyl transferase-like, C-terminal domain superfamily BER93_RS00980 IPR023635 Peptide deformylase BER93_RS00980 IPR036821 Peptide deformylase superfamily BER93_RS00985 IPR036779 LysM domain superfamily BER93_RS00985 IPR018392 LysM domain BER93_RS00990 IPR041614 DprA, winged helix domain BER93_RS00990 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS00990 IPR003488 DNA recombination-mediator protein A BER93_RS00995 IPR007456 Smg BER93_RS01010 IPR025589 Topoisomerase C-terminal repeat BER93_RS01010 IPR034149 DNA topoisomerase 1, TOPRIM domain BER93_RS01010 IPR006171 TOPRIM domain BER93_RS01010 IPR028612 DNA topoisomerase I, type IA BER93_RS01010 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BER93_RS01010 IPR003602 DNA topoisomerase, type IA, DNA-binding domain BER93_RS01010 IPR023405 DNA topoisomerase, type IA, core domain BER93_RS01010 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 BER93_RS01010 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BER93_RS01010 IPR013497 DNA topoisomerase, type IA, central BER93_RS01010 IPR000380 DNA topoisomerase, type IA BER93_RS01010 IPR005733 DNA topoisomerase I, bacterial-type BER93_RS01010 IPR023406 DNA topoisomerase, type IA, active site BER93_RS01010 IPR003601 DNA topoisomerase, type IA, domain 2 BER93_RS01015 IPR006070 YrdC-like domain BER93_RS01015 IPR023535 Threonylcarbamoyl-AMP synthase BER93_RS01015 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BER93_RS01040 IPR010917 TonB-dependent receptor, conserved site BER93_RS01040 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS01040 IPR012910 TonB-dependent receptor, plug domain BER93_RS01040 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS01040 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS01040 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS01040 IPR010916 TonB box, conserved site BER93_RS01045 IPR000184 Bacterial surface antigen (D15) BER93_RS01045 IPR035243 TamA, POTRA domain 1 BER93_RS01045 IPR039910 Surface antigen D15-like BER93_RS01050 IPR007452 Translocation and assembly module TamB BER93_RS01065 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BER93_RS01065 IPR025666 Pyrrolo-quinoline quinone-like domain BER93_RS01065 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER93_RS01065 IPR002372 Pyrrolo-quinoline quinone repeat BER93_RS01065 IPR015943 WD40/YVTN repeat-like-containing domain superfamily BER93_RS01070 IPR006001 Carbohydrate kinase, thermoresistant glucokinase BER93_RS01070 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS01075 IPR018043 Sodium:galactoside symporter, conserved site BER93_RS01075 IPR036259 MFS transporter superfamily BER93_RS01075 IPR039672 Lactose permease-like BER93_RS01075 IPR001927 Sodium:galactoside symporter BER93_RS01085 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS01085 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS01085 IPR000700 PAS-associated, C-terminal BER93_RS01085 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS01085 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS01085 IPR005467 Histidine kinase domain BER93_RS01085 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS01090 IPR003810 Putative manganese efflux pump BER93_RS01090 IPR022929 Putative manganese efflux pump MntP BER93_RS01095 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS01095 IPR014757 Transcription regulator IclR, C-terminal BER93_RS01095 IPR005471 Transcription regulator IclR, N-terminal BER93_RS01095 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS01095 IPR029016 GAF-like domain superfamily BER93_RS01100 IPR020846 Major facilitator superfamily domain BER93_RS01100 IPR011701 Major facilitator superfamily BER93_RS01100 IPR005275 L-fucose permease FucP BER93_RS01100 IPR036259 MFS transporter superfamily BER93_RS01105 IPR011008 Dimeric alpha-beta barrel BER93_RS01105 IPR008000 Rhamnose/fucose mutarotase BER93_RS01110 IPR029017 Enolase-like, N-terminal BER93_RS01110 IPR029065 Enolase C-terminal domain-like BER93_RS01110 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BER93_RS01110 IPR034610 L-fuconate dehydratase BER93_RS01110 IPR036849 Enolase-like, C-terminal domain superfamily BER93_RS01110 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BER93_RS01115 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily BER93_RS01115 IPR011234 Fumarylacetoacetase-like, C-terminal BER93_RS01120 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS01120 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS01120 IPR036291 NAD(P)-binding domain superfamily BER93_RS01130 IPR023210 NADP-dependent oxidoreductase domain BER93_RS01130 IPR036812 NADP-dependent oxidoreductase domain superfamily BER93_RS01135 IPR000792 Transcription regulator LuxR, C-terminal BER93_RS01135 IPR001789 Signal transduction response regulator, receiver domain BER93_RS01135 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS01135 IPR011006 CheY-like superfamily BER93_RS01140 IPR011904 Acetate-CoA ligase BER93_RS01140 IPR042099 AMP-dependent synthetase-like superfamily BER93_RS01140 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain BER93_RS01140 IPR025110 AMP-binding enzyme, C-terminal domain BER93_RS01140 IPR020845 AMP-binding, conserved site BER93_RS01140 IPR000873 AMP-dependent synthetase/ligase BER93_RS01150 IPR007436 Protein of unknown function DUF485 BER93_RS01155 IPR014083 Cation/acetate symporter ActP BER93_RS01155 IPR018212 Sodium/solute symporter, conserved site BER93_RS01155 IPR001734 Sodium/solute symporter BER93_RS01155 IPR038377 Sodium/glucose symporter superfamily BER93_RS01160 IPR005135 Endonuclease/exonuclease/phosphatase BER93_RS01160 IPR020848 AP endonuclease 1, conserved site BER93_RS01160 IPR020847 AP endonuclease 1, binding site BER93_RS01160 IPR004808 AP endonuclease 1 BER93_RS01160 IPR037493 Exodeoxyribonuclease III-like BER93_RS01160 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BER93_RS01170 IPR007341 Transglycosylase-associated protein BER93_RS01175 IPR004568 Phosphopantetheine-protein transferase domain BER93_RS01175 IPR037143 4'-phosphopantetheinyl transferase domain superfamily BER93_RS01175 IPR008278 4'-phosphopantetheinyl transferase domain BER93_RS01185 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS01185 IPR003682 rRNA small subunit methyltransferase G BER93_RS01190 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA BER93_RS01190 IPR001036 Acriflavin resistance protein BER93_RS01190 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS01200 IPR001383 Ribosomal protein L28 BER93_RS01200 IPR037147 Ribosomal protein L28/L24 superfamily BER93_RS01200 IPR026569 Ribosomal protein L28/L24 BER93_RS01200 IPR034704 L28p-like BER93_RS01205 IPR038584 Ribosomal protein L33 superfamily BER93_RS01205 IPR011332 Zinc-binding ribosomal protein BER93_RS01205 IPR018264 Ribosomal protein L33, conserved site BER93_RS01205 IPR001705 Ribosomal protein L33 BER93_RS01210 IPR001736 Phospholipase D/Transphosphatidylase BER93_RS01210 IPR025202 Phospholipase D-like domain BER93_RS01210 IPR027379 Cardiolipin synthase N-terminal BER93_RS01210 IPR022924 Cardiolipin synthase BER93_RS01210 IPR030874 Cardiolipin synthase, Firmicutes-type BER93_RS01220 IPR005753 DNA helicase, ATP-dependent, UvrD type BER93_RS01220 IPR014017 UvrD-like DNA helicase, C-terminal BER93_RS01220 IPR000212 DNA helicase, UvrD/REP type BER93_RS01220 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS01220 IPR014016 UvrD-like helicase, ATP-binding domain BER93_RS01220 IPR013986 DExx box DNA helicase domain superfamily BER93_RS01220 IPR034739 UvrD/AddA helicase, N-terminal BER93_RS01235 IPR008490 Transposase InsH, N-terminal BER93_RS01250 IPR013196 Helix-turn-helix, type 11 BER93_RS01250 IPR008988 Transcriptional repressor, C-terminal BER93_RS01250 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS01250 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS01250 IPR030855 Bifunctional ligase/repressor BirA BER93_RS01250 IPR004409 Biotin operon repressor, helix-turn-helix domain BER93_RS01250 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain BER93_RS01250 IPR003142 Biotin protein ligase, C-terminal BER93_RS01250 IPR004408 Biotin--acetyl-CoA-carboxylase ligase BER93_RS01255 IPR004619 Type III pantothenate kinase BER93_RS01275 IPR001584 Integrase, catalytic core BER93_RS01275 IPR025948 HTH-like domain BER93_RS01275 IPR012337 Ribonuclease H-like superfamily BER93_RS01275 IPR036397 Ribonuclease H superfamily BER93_RS01280 IPR002514 Transposase IS3/IS911family BER93_RS01280 IPR009057 Homeobox-like domain superfamily BER93_RS01285 IPR002559 Transposase, IS4-like BER93_RS01285 IPR008490 Transposase InsH, N-terminal BER93_RS01300 IPR008490 Transposase InsH, N-terminal BER93_RS01315 IPR000620 EamA domain BER93_RS01315 IPR004626 RarD protein BER93_RS01325 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS01325 IPR002306 Tryptophan-tRNA ligase BER93_RS01325 IPR024109 Tryptophan-tRNA ligase, bacterial-type BER93_RS01325 IPR002305 Aminoacyl-tRNA synthetase, class Ic BER93_RS01325 IPR036913 YegP-like superfamily BER93_RS01340 IPR020855 Ureohydrolase, manganese-binding site BER93_RS01340 IPR023696 Ureohydrolase domain superfamily BER93_RS01340 IPR006035 Ureohydrolase BER93_RS01340 IPR014033 Arginase BER93_RS01360 IPR008490 Transposase InsH, N-terminal BER93_RS01365 IPR018094 Thymidylate kinase BER93_RS01365 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS01365 IPR039430 Thymidylate kinase-like domain BER93_RS01370 IPR008490 Transposase InsH, N-terminal BER93_RS01385 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal BER93_RS01385 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B BER93_RS01385 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal BER93_RS01385 IPR023042 Peptidase M17, leucine aminopeptidase BER93_RS01390 IPR010976 Beta-phosphoglucomutase hydrolase BER93_RS01390 IPR006439 HAD hydrolase, subfamily IA BER93_RS01390 IPR036412 HAD-like superfamily BER93_RS01390 IPR010972 Beta-phosphoglucomutase BER93_RS01390 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BER93_RS01390 IPR041492 Haloacid dehalogenase-like hydrolase BER93_RS01390 IPR023214 HAD superfamily BER93_RS01395 IPR002549 Transmembrane protein TqsA-like BER93_RS01415 IPR009003 Peptidase S1, PA clan BER93_RS01415 IPR011782 Peptidase S1C, Do BER93_RS01415 IPR001940 Peptidase S1C BER93_RS01415 IPR036034 PDZ superfamily BER93_RS01415 IPR001478 PDZ domain BER93_RS01435 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS01435 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS01435 IPR005467 Histidine kinase domain BER93_RS01435 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS01435 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS01435 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS01435 IPR013727 Two-component sensor kinase, N-terminal BER93_RS01440 IPR001867 OmpR/PhoB-type DNA-binding domain BER93_RS01440 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS01440 IPR039420 Transcriptional regulatory protein WalR-like BER93_RS01440 IPR001789 Signal transduction response regulator, receiver domain BER93_RS01440 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS01440 IPR011006 CheY-like superfamily BER93_RS01475 IPR036291 NAD(P)-binding domain superfamily BER93_RS01475 IPR013549 Domain of unknown function DUF1731 BER93_RS01475 IPR010099 Epimerase family protein SDR39U1 BER93_RS01475 IPR001509 NAD-dependent epimerase/dehydratase BER93_RS01515 IPR002559 Transposase, IS4-like BER93_RS01530 IPR001233 tRNA-splicing ligase, RtcB BER93_RS01530 IPR036025 tRNA-splicing ligase RtcB-like superfamily BER93_RS01535 IPR001647 DNA-binding HTH domain, TetR-type BER93_RS01535 IPR009057 Homeobox-like domain superfamily BER93_RS01535 IPR023764 Transcriptional repressor HTH, FabR BER93_RS01540 IPR012675 Beta-grasp domain superfamily BER93_RS01540 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_RS01540 IPR036010 2Fe-2S ferredoxin-like superfamily BER93_RS01540 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain BER93_RS01540 IPR017927 FAD-binding domain, ferredoxin reductase-type BER93_RS01540 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase BER93_RS01540 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BER93_RS01540 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site BER93_RS01540 IPR017938 Riboflavin synthase-like beta-barrel BER93_RS01540 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain BER93_RS01545 IPR005804 Fatty acid desaturase domain BER93_RS01550 IPR001633 EAL domain BER93_RS01550 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain BER93_RS01550 IPR035919 EAL domain superfamily BER93_RS01565 IPR025158 Mg chelatase-related protein, C-terminal domain BER93_RS01565 IPR003593 AAA+ ATPase domain BER93_RS01565 IPR001208 MCM domain BER93_RS01565 IPR004482 Mg chelatase-related protein BER93_RS01565 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS01565 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS01565 IPR000523 Magnesium chelatase ChlI domain BER93_RS01565 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS01570 IPR007475 Ubiquinone biosynthesis accessory factor UbiK BER93_RS01575 IPR017918 Nitrogen regulatory protein PII, conserved site BER93_RS01575 IPR002332 Nitrogen regulatory protein P-II, urydylation site BER93_RS01575 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER93_RS01575 IPR002187 Nitrogen regulatory protein PII BER93_RS01575 IPR011322 Nitrogen regulatory PII-like, alpha/beta BER93_RS01580 IPR029018 Beta-hexosaminidase-like, domain 2 BER93_RS01580 IPR003961 Fibronectin type III BER93_RS01580 IPR013783 Immunoglobulin-like fold BER93_RS01580 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal BER93_RS01580 IPR036116 Fibronectin type III superfamily BER93_RS01580 IPR011496 Beta-N-acetylglucosaminidase BER93_RS01580 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily BER93_RS01580 IPR002102 Cellulosome anchoring protein, cohesin domain BER93_RS01580 IPR000421 Coagulation factor 5/8 C-terminal domain BER93_RS01580 IPR017853 Glycoside hydrolase superfamily BER93_RS01580 IPR008979 Galactose-binding-like domain superfamily BER93_RS01600 IPR030373 Polyamine biosynthesis domain, conserved site BER93_RS01600 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS01600 IPR030374 Polyamine biosynthesis domain BER93_RS01600 IPR001045 Spermidine/spermine synthases BER93_RS01600 IPR035246 Spermidine synthase, tetramerisation domain BER93_RS01600 IPR037163 Spermidine synthase, tetramerisation domain superfamily BER93_RS01605 IPR041128 Arginine decarboxylase, C-terminal helical BER93_RS01605 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal BER93_RS01605 IPR002985 Arginine decarboxylase BER93_RS01605 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site BER93_RS01605 IPR040634 Arginine decarboxylase, helical bundle domain BER93_RS01605 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal BER93_RS01605 IPR000183 Ornithine/DAP/Arg decarboxylase BER93_RS01605 IPR029066 PLP-binding barrel BER93_RS01610 IPR008490 Transposase InsH, N-terminal BER93_RS01610 IPR002559 Transposase, IS4-like BER93_RS01620 IPR017740 Type VI secretion system-associated, ImpA BER93_RS01620 IPR010657 ImpA, N-terminal BER93_RS01630 IPR019760 DNA-directed DNA polymerase, family A, conserved site BER93_RS01630 IPR018320 DNA polymerase 1 BER93_RS01630 IPR002421 5'-3' exonuclease, N-terminal BER93_RS01630 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal BER93_RS01630 IPR002298 DNA polymerase A BER93_RS01630 IPR036279 5'-3' exonuclease, C-terminal domain superfamily BER93_RS01630 IPR036397 Ribonuclease H superfamily BER93_RS01630 IPR012337 Ribonuclease H-like superfamily BER93_RS01630 IPR029060 PIN-like domain superfamily BER93_RS01630 IPR008918 Helix-hairpin-helix motif, class 2 BER93_RS01630 IPR002562 3'-5' exonuclease domain BER93_RS01630 IPR001098 DNA-directed DNA polymerase, family A, palm domain BER93_RS01630 IPR020045 DNA polymerase I-like, H3TH domain BER93_RS01635 IPR001260 Coproporphyrinogen III oxidase, aerobic BER93_RS01635 IPR018375 Coproporphyrinogen III oxidase, conserved site BER93_RS01635 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily BER93_RS01665 IPR031038 Chorismatase, FkbO/Hyg5 family BER93_RS01665 IPR035959 RutC-like superfamily BER93_RS01670 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS01670 IPR006905 Flavin-dependent halogenase BER93_RS01675 IPR036736 ACP-like superfamily BER93_RS01675 IPR003231 Acyl carrier protein (ACP) BER93_RS01675 IPR009081 Phosphopantetheine binding ACP domain BER93_RS01675 IPR006162 Phosphopantetheine attachment site BER93_RS01685 IPR002123 Phospholipid/glycerol acyltransferase BER93_RS01685 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase BER93_RS01690 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ BER93_RS01690 IPR029069 HotDog domain superfamily BER93_RS01690 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ BER93_RS01720 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative BER93_RS01720 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS01720 IPR036291 NAD(P)-binding domain superfamily BER93_RS01730 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS01730 IPR001173 Glycosyltransferase 2-like BER93_RS01730 IPR039528 DPM1-like BER93_RS01740 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER93_RS01740 IPR016039 Thiolase-like BER93_RS01740 IPR014031 Beta-ketoacyl synthase, C-terminal BER93_RS01740 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_RS01740 IPR018201 Beta-ketoacyl synthase, active site BER93_RS01740 IPR000794 Beta-ketoacyl synthase BER93_RS01740 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 BER93_RS01745 IPR038068 YcgL-like superfamily BER93_RS01745 IPR027354 YcgL domain BER93_RS01760 IPR011613 GH15-like domain BER93_RS01760 IPR012341 Six-hairpin glycosidase-like superfamily BER93_RS01760 IPR008928 Six-hairpin glycosidase superfamily BER93_RS01765 IPR001282 Glucose-6-phosphate dehydrogenase BER93_RS01765 IPR036291 NAD(P)-binding domain superfamily BER93_RS01765 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding BER93_RS01765 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal BER93_RS01765 IPR019796 Glucose-6-phosphate dehydrogenase, active site BER93_RS01770 IPR038770 Sodium/solute symporter superfamily BER93_RS01770 IPR023941 Glutathione-regulated potassium-efflux system protein KefC BER93_RS01770 IPR006036 Potassium uptake protein TrkA BER93_RS01770 IPR004771 K+/H+ exchanger BER93_RS01770 IPR006153 Cation/H+ exchanger BER93_RS01770 IPR036291 NAD(P)-binding domain superfamily BER93_RS01770 IPR003148 Regulator of K+ conductance, N-terminal BER93_RS01775 IPR023561 Carbonic anhydrase, alpha-class BER93_RS01775 IPR001148 Alpha carbonic anhydrase domain BER93_RS01775 IPR041891 Carbonic anhydrase, prokaryotic-like BER93_RS01775 IPR018338 Carbonic anhydrase, alpha-class, conserved site BER93_RS01775 IPR006311 Twin-arginine translocation pathway, signal sequence BER93_RS01775 IPR036398 Alpha carbonic anhydrase domain superfamily BER93_RS01780 IPR038076 MgtE, N-terminal domain superfamily BER93_RS01780 IPR006667 SLC41 divalent cation transporters, integral membrane domain BER93_RS01780 IPR038048 Magnesium transporter MgtE, transmembrane domain BER93_RS01780 IPR000644 CBS domain BER93_RS01780 IPR006668 Magnesium transporter, MgtE intracellular domain BER93_RS01780 IPR006669 Magnesium transporter MgtE BER93_RS01780 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily BER93_RS01785 IPR011761 ATP-grasp fold BER93_RS01785 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS01785 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain BER93_RS01785 IPR016102 Succinyl-CoA synthetase-like BER93_RS01785 IPR003781 CoA-binding BER93_RS01785 IPR036291 NAD(P)-binding domain superfamily BER93_RS01785 IPR000182 GNAT domain BER93_RS01785 IPR016181 Acyl-CoA N-acyltransferase BER93_RS01795 IPR013346 Ribonucleotide reductase, class I , alpha subunit BER93_RS01795 IPR005144 ATP-cone domain BER93_RS01795 IPR000788 Ribonucleotide reductase large subunit, C-terminal BER93_RS01795 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal BER93_RS01795 IPR039718 Ribonucleoside-diphosphate reductase large subunit BER93_RS01795 IPR013509 Ribonucleotide reductase large subunit, N-terminal BER93_RS01800 IPR000358 Ribonucleotide reductase small subunit family BER93_RS01800 IPR033909 Ribonucleotide reductase small subunit BER93_RS01800 IPR012348 Ribonucleotide reductase-like BER93_RS01800 IPR009078 Ferritin-like superfamily BER93_RS01820 IPR005744 Hly-III BER93_RS01820 IPR004254 AdipoR/Haemolysin-III-related BER93_RS01825 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS01825 IPR001650 Helicase, C-terminal BER93_RS01825 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS01825 IPR011545 DEAD/DEAH box helicase domain BER93_RS01825 IPR018973 DEAD/DEAH-box helicase, putative BER93_RS01860 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS01860 IPR001036 Acriflavin resistance protein BER93_RS01865 IPR001036 Acriflavin resistance protein BER93_RS01865 IPR023931 Multidrug resistance protein MdtC BER93_RS01865 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS01885 IPR022436 Rickettsia palindromic element RPE2 BER93_RS01885 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site BER93_RS01885 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal BER93_RS01885 IPR011530 Ribosomal RNA adenine dimethylase BER93_RS01885 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS01885 IPR023165 rRNA adenine dimethylase-like BER93_RS01885 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm BER93_RS01925 IPR025948 HTH-like domain BER93_RS01925 IPR001584 Integrase, catalytic core BER93_RS01925 IPR012337 Ribonuclease H-like superfamily BER93_RS01925 IPR036397 Ribonuclease H superfamily BER93_RS01930 IPR025948 HTH-like domain BER93_RS01930 IPR001584 Integrase, catalytic core BER93_RS01930 IPR036397 Ribonuclease H superfamily BER93_RS01930 IPR012337 Ribonuclease H-like superfamily BER93_RS01935 IPR002514 Transposase IS3/IS911family BER93_RS01935 IPR009057 Homeobox-like domain superfamily BER93_RS01940 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative BER93_RS01940 IPR010758 Trans-2-enoyl-CoA reductase BER93_RS01940 IPR024906 Enoyl reductase FAD binding domain BER93_RS01960 IPR037396 FMN hydroxy acid dehydrogenase domain BER93_RS01960 IPR000262 FMN-dependent dehydrogenase BER93_RS01960 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent BER93_RS01960 IPR013785 Aldolase-type TIM barrel BER93_RS01960 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site BER93_RS01960 IPR020920 L-lactate dehydrogenase, bacterial BER93_RS01975 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS01975 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS01975 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS01975 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site BER93_RS01975 IPR000796 Aspartate/other aminotransferase BER93_RS01975 IPR004839 Aminotransferase, class I/classII BER93_RS01980 IPR028343 Fructose-1,6-bisphosphatase BER93_RS01980 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal BER93_RS01980 IPR000146 Fructose-1,6-bisphosphatase class 1 BER93_RS02010 IPR020084 NUDIX hydrolase, conserved site BER93_RS02010 IPR000086 NUDIX hydrolase domain BER93_RS02010 IPR015376 Zinc ribbon, NADH pyrophosphatase BER93_RS02010 IPR022925 NADH pyrophosphatase NudC BER93_RS02010 IPR015797 NUDIX hydrolase-like domain superfamily BER93_RS02020 IPR013856 Peptidase M4 domain BER93_RS02020 IPR032475 Protealysin, N-terminal propeptide BER93_RS02020 IPR027268 Peptidase M4/M1, CTD superfamily BER93_RS02020 IPR001570 Peptidase M4, C-terminal BER93_RS02020 IPR023612 Peptidase M4 BER93_RS02035 IPR002559 Transposase, IS4-like BER93_RS02040 IPR025161 Putative transposase IS4/IS5 family BER93_RS02050 IPR020613 Thiolase, conserved site BER93_RS02050 IPR020610 Thiolase, active site BER93_RS02050 IPR020615 Thiolase, acyl-enzyme intermediate active site BER93_RS02050 IPR016039 Thiolase-like BER93_RS02050 IPR002155 Thiolase BER93_RS02050 IPR012806 Acetyl-CoA C-acyltransferase FadI BER93_RS02050 IPR020616 Thiolase, N-terminal BER93_RS02050 IPR020617 Thiolase, C-terminal BER93_RS02080 IPR001763 Rhodanese-like domain BER93_RS02080 IPR036873 Rhodanese-like domain superfamily BER93_RS02085 IPR003708 Bacterial protein export chaperone SecB BER93_RS02085 IPR035958 SecB-like superfamily BER93_RS02090 IPR036291 NAD(P)-binding domain superfamily BER93_RS02090 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal BER93_RS02090 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS02090 IPR013328 6-phosphogluconate dehydrogenase, domain 2 BER93_RS02090 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent BER93_RS02090 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal BER93_RS02100 IPR000399 TPP-binding enzyme, conserved site BER93_RS02100 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain BER93_RS02100 IPR012000 Thiamine pyrophosphate enzyme, central domain BER93_RS02100 IPR029035 DHS-like NAD/FAD-binding domain superfamily BER93_RS02100 IPR029061 Thiamin diphosphate-binding fold BER93_RS02100 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding BER93_RS02110 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_RS02110 IPR029028 Alpha/beta knot methyltransferases BER93_RS02110 IPR001537 tRNA/rRNA methyltransferase, SpoU type BER93_RS02110 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase BER93_RS02120 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal BER93_RS02120 IPR016039 Thiolase-like BER93_RS02120 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER93_RS02120 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 BER93_RS02130 IPR009057 Homeobox-like domain superfamily BER93_RS02130 IPR002514 Transposase IS3/IS911family BER93_RS02135 IPR036397 Ribonuclease H superfamily BER93_RS02135 IPR012337 Ribonuclease H-like superfamily BER93_RS02135 IPR001584 Integrase, catalytic core BER93_RS02135 IPR025948 HTH-like domain BER93_RS02150 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_RS02150 IPR013123 RNA 2-O ribose methyltransferase, substrate binding BER93_RS02150 IPR001537 tRNA/rRNA methyltransferase, SpoU type BER93_RS02150 IPR004441 RNA methyltransferase TrmH family BER93_RS02150 IPR029064 50S ribosomal protein L30e-like BER93_RS02150 IPR029028 Alpha/beta knot methyltransferases BER93_RS02150 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB BER93_RS02160 IPR002480 DAHP synthetase, class II BER93_RS02160 IPR013785 Aldolase-type TIM barrel BER93_RS02180 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS02180 IPR035651 BipA, domain V BER93_RS02180 IPR035647 EF-G domain III/V-like BER93_RS02180 IPR004161 Translation elongation factor EFTu-like, domain 2 BER93_RS02180 IPR042116 GTP-binding protein TypA/BipA, C-terminal BER93_RS02180 IPR031157 Tr-type G domain, conserved site BER93_RS02180 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS02180 IPR005225 Small GTP-binding protein domain BER93_RS02180 IPR000795 Transcription factor, GTP-binding domain BER93_RS02180 IPR000640 Elongation factor EFG, domain V-like BER93_RS02180 IPR006298 GTP-binding protein TypA BER93_RS02185 IPR029000 Cyclophilin-like domain superfamily BER93_RS02185 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site BER93_RS02185 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain BER93_RS02190 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal BER93_RS02190 IPR022383 Lactate/malate dehydrogenase, C-terminal BER93_RS02190 IPR001236 Lactate/malate dehydrogenase, N-terminal BER93_RS02190 IPR036291 NAD(P)-binding domain superfamily BER93_RS02190 IPR001557 L-lactate/malate dehydrogenase BER93_RS02190 IPR010945 Malate dehydrogenase, type 2 BER93_RS02205 IPR010987 Glutathione S-transferase, C-terminal-like BER93_RS02205 IPR040079 Glutathione Transferase family BER93_RS02205 IPR004045 Glutathione S-transferase, N-terminal BER93_RS02205 IPR004046 Glutathione S-transferase, C-terminal BER93_RS02205 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BER93_RS02205 IPR036249 Thioredoxin-like superfamily BER93_RS02215 IPR008490 Transposase InsH, N-terminal BER93_RS02215 IPR002559 Transposase, IS4-like BER93_RS02225 IPR023753 FAD/NAD(P)-binding domain BER93_RS02225 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal BER93_RS02225 IPR013785 Aldolase-type TIM barrel BER93_RS02225 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS02230 IPR013149 Alcohol dehydrogenase, C-terminal BER93_RS02230 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site BER93_RS02230 IPR020843 Polyketide synthase, enoylreductase domain BER93_RS02230 IPR036291 NAD(P)-binding domain superfamily BER93_RS02230 IPR011032 GroES-like superfamily BER93_RS02230 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 BER93_RS02230 IPR013154 Alcohol dehydrogenase, N-terminal BER93_RS02235 IPR006690 Outer membrane protein, OmpA-like, conserved site BER93_RS02235 IPR028974 TSP type-3 repeat BER93_RS02235 IPR006665 OmpA-like domain BER93_RS02235 IPR008722 Outer membrane porin F, N-terminal BER93_RS02235 IPR006664 Outer membrane protein, bacterial BER93_RS02235 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BER93_RS02235 IPR036737 OmpA-like domain superfamily BER93_RS02245 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site BER93_RS02245 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS02245 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain BER93_RS02245 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_RS02245 IPR006145 Pseudouridine synthase, RsuA/RluA BER93_RS02255 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS02255 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase BER93_RS02255 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS02255 IPR004839 Aminotransferase, class I/classII BER93_RS02255 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site BER93_RS02255 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS02260 IPR000957 Sulphate/thiosulphate-binding, conserved site BER93_RS02260 IPR034408 Sulphate/thiosulphate-binding site BER93_RS02260 IPR005669 Thiosulphate/Sulfate-binding protein BER93_RS02265 IPR011865 Sulphate ABC transporter, permease protein CysT BER93_RS02265 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS02265 IPR035906 MetI-like superfamily BER93_RS02265 IPR005667 Sulphate ABC transporter permease protein 2 BER93_RS02270 IPR005667 Sulphate ABC transporter permease protein 2 BER93_RS02270 IPR035906 MetI-like superfamily BER93_RS02270 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS02270 IPR011866 Sulphate ABC transporter, permease protein CysW BER93_RS02275 IPR024765 TOBE-like domain BER93_RS02275 IPR005666 Sulphate transport system permease protein 1 BER93_RS02275 IPR008995 Molybdate/tungstate binding, C-terminal BER93_RS02275 IPR003439 ABC transporter-like BER93_RS02275 IPR017871 ABC transporter, conserved site BER93_RS02275 IPR041193 CysA, C-terminal regulatory domain BER93_RS02275 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal BER93_RS02275 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS02275 IPR003593 AAA+ ATPase domain BER93_RS02285 IPR013154 Alcohol dehydrogenase, N-terminal BER93_RS02285 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_RS02285 IPR011032 GroES-like superfamily BER93_RS02285 IPR004627 L-threonine 3-dehydrogenase BER93_RS02285 IPR020843 Polyketide synthase, enoylreductase domain BER93_RS02285 IPR013149 Alcohol dehydrogenase, C-terminal BER93_RS02285 IPR036291 NAD(P)-binding domain superfamily BER93_RS02295 IPR017850 Alkaline-phosphatase-like, core domain superfamily BER93_RS02295 IPR017767 Bacterial phospholipase C, phosphocholine-specific BER93_RS02295 IPR007312 Phosphoesterase BER93_RS02295 IPR008475 Bacterial phospholipase C, C-terminal domain BER93_RS02295 IPR006311 Twin-arginine translocation pathway, signal sequence BER93_RS02300 IPR013078 Histidine phosphatase superfamily, clade-1 BER93_RS02300 IPR029033 Histidine phosphatase superfamily BER93_RS02320 IPR014756 Immunoglobulin E-set BER93_RS02320 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_RS02320 IPR013780 Glycosyl hydrolase, all-beta BER93_RS02320 IPR011837 Glycogen debranching enzyme, GlgX type BER93_RS02320 IPR017853 Glycoside hydrolase superfamily BER93_RS02320 IPR013783 Immunoglobulin-like fold BER93_RS02320 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_RS02335 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS02335 IPR011761 ATP-grasp fold BER93_RS02335 IPR013651 ATP-grasp fold, RimK-type BER93_RS02335 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK BER93_RS02335 IPR041107 RimK, PreATP-grasp domain BER93_RS02335 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX BER93_RS02345 IPR039420 Transcriptional regulatory protein WalR-like BER93_RS02345 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS02345 IPR001867 OmpR/PhoB-type DNA-binding domain BER93_RS02345 IPR011006 CheY-like superfamily BER93_RS02345 IPR001789 Signal transduction response regulator, receiver domain BER93_RS02350 IPR013767 PAS fold BER93_RS02350 IPR021766 Phosphate regulon sensor protein PhoR BER93_RS02350 IPR035965 PAS domain superfamily BER93_RS02350 IPR005467 Histidine kinase domain BER93_RS02350 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS02350 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS02350 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS02350 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS02350 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS02350 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR BER93_RS02350 IPR000014 PAS domain BER93_RS02370 IPR017938 Riboflavin synthase-like beta-barrel BER93_RS02370 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily BER93_RS02370 IPR001783 Lumazine-binding protein BER93_RS02370 IPR026017 Lumazine-binding domain BER93_RS02375 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BER93_RS02375 IPR036144 RibA-like superfamily BER93_RS02375 IPR032677 GTP cyclohydrolase II BER93_RS02375 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB BER93_RS02380 IPR034964 Lumazine synthase BER93_RS02380 IPR002180 Lumazine/riboflavin synthase BER93_RS02380 IPR036467 Lumazine/riboflavin synthase superfamily BER93_RS02385 IPR035926 NusB-like superfamily BER93_RS02385 IPR011605 NusB antitermination factor BER93_RS02385 IPR006027 NusB/RsmB/TIM44 BER93_RS02390 IPR016188 PurM-like, N-terminal domain BER93_RS02390 IPR006283 Thiamine-monophosphate kinase BER93_RS02390 IPR036676 PurM-like, C-terminal domain superfamily BER93_RS02390 IPR010918 PurM-like, C-terminal domain BER93_RS02390 IPR036921 PurM-like, N-terminal domain superfamily BER93_RS02400 IPR004623 Potassium-transporting ATPase A chain BER93_RS02400 IPR023298 P-type ATPase, transmembrane domain superfamily BER93_RS02425 IPR006336 Glutamate--cysteine ligase, GCS2 BER93_RS02425 IPR017809 Glutamate--cysteine ligase EgtA, Actinobacteria BER93_RS02425 IPR035434 Glutamate--cysteine ligase, bacteria and plant BER93_RS02425 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_RS02430 IPR030393 EngB-type guanine nucleotide-binding (G) domain BER93_RS02430 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC BER93_RS02430 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS02430 IPR006073 GTP binding domain BER93_RS02435 IPR009056 Cytochrome c-like domain BER93_RS02435 IPR036909 Cytochrome c-like domain superfamily BER93_RS02435 IPR024167 Cytochrome c4-like BER93_RS02445 IPR013766 Thioredoxin domain BER93_RS02445 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL BER93_RS02445 IPR036249 Thioredoxin-like superfamily BER93_RS02445 IPR017937 Thioredoxin, conserved site BER93_RS02445 IPR001853 DSBA-like thioredoxin domain BER93_RS02455 IPR011032 GroES-like superfamily BER93_RS02455 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_RS02455 IPR013154 Alcohol dehydrogenase, N-terminal BER93_RS02455 IPR013149 Alcohol dehydrogenase, C-terminal BER93_RS02455 IPR020843 Polyketide synthase, enoylreductase domain BER93_RS02455 IPR036291 NAD(P)-binding domain superfamily BER93_RS02465 IPR002559 Transposase, IS4-like BER93_RS02495 IPR011673 Protein of unknown function DUF1615 BER93_RS02515 IPR004840 Amino acid permease, conserved site BER93_RS02515 IPR004841 Amino acid permease/ SLC12A domain BER93_RS02525 IPR004488 Magnesium/cobalt transport protein CorA BER93_RS02525 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB BER93_RS02545 IPR001661 Glycoside hydrolase, family 37 BER93_RS02545 IPR012341 Six-hairpin glycosidase-like superfamily BER93_RS02545 IPR008928 Six-hairpin glycosidase superfamily BER93_RS02545 IPR023720 Trehalase, periplasmic BER93_RS02545 IPR018232 Glycoside hydrolase, family 37, conserved site BER93_RS02570 IPR001633 EAL domain BER93_RS02570 IPR000160 GGDEF domain BER93_RS02570 IPR005330 MHYT domain BER93_RS02570 IPR029787 Nucleotide cyclase BER93_RS02570 IPR035919 EAL domain superfamily BER93_RS02585 IPR012291 CBM2, carbohydrate-binding domain superfamily BER93_RS02585 IPR001547 Glycoside hydrolase, family 5 BER93_RS02585 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily BER93_RS02585 IPR018087 Glycoside hydrolase, family 5, conserved site BER93_RS02585 IPR001919 Carbohydrate-binding type-2 domain BER93_RS02585 IPR017853 Glycoside hydrolase superfamily BER93_RS02590 IPR002645 STAS domain BER93_RS02590 IPR036513 STAS domain superfamily BER93_RS02590 IPR018045 Sulphate anion transporter, conserved site BER93_RS02590 IPR011547 SLC26A/SulP transporter domain BER93_RS02590 IPR001902 SLC26A/SulP transporter BER93_RS02600 IPR023725 Glucan biosynthesis glucosyltransferase H BER93_RS02600 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS02600 IPR001173 Glycosyltransferase 2-like BER93_RS02615 IPR011006 CheY-like superfamily BER93_RS02615 IPR001789 Signal transduction response regulator, receiver domain BER93_RS02615 IPR007492 LytTR DNA-binding domain BER93_RS02620 IPR022418 Porphobilinogen deaminase, C-terminal BER93_RS02620 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily BER93_RS02620 IPR022417 Porphobilinogen deaminase, N-terminal BER93_RS02620 IPR000860 Porphobilinogen deaminase BER93_RS02620 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site BER93_RS02645 IPR002470 Peptidase S9A, prolyl oligopeptidase BER93_RS02645 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_RS02645 IPR023302 Peptidase S9A, N-terminal domain BER93_RS02645 IPR029058 Alpha/Beta hydrolase fold BER93_RS02655 IPR004839 Aminotransferase, class I/classII BER93_RS02655 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS02655 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS02655 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site BER93_RS02660 IPR029058 Alpha/Beta hydrolase fold BER93_RS02660 IPR002470 Peptidase S9A, prolyl oligopeptidase BER93_RS02660 IPR023302 Peptidase S9A, N-terminal domain BER93_RS02660 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_RS02670 IPR001653 Diaminopimelate epimerase, DapF BER93_RS02670 IPR018510 Diaminopimelate epimerase, active site BER93_RS02680 IPR002104 Integrase, catalytic domain BER93_RS02680 IPR010998 Integrase/recombinase, N-terminal BER93_RS02680 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_RS02680 IPR004107 Integrase, SAM-like, N-terminal BER93_RS02680 IPR011931 Tyrosine recombinase XerC BER93_RS02680 IPR023009 Tyrosine recombinase XerC/XerD BER93_RS02680 IPR013762 Integrase-like, catalytic domain superfamily BER93_RS02685 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_RS02685 IPR022281 ATP-dependent protease, HslV subunit BER93_RS02685 IPR023333 Proteasome B-type subunit BER93_RS02685 IPR001353 Proteasome, subunit alpha/beta BER93_RS02690 IPR003593 AAA+ ATPase domain BER93_RS02690 IPR003959 ATPase, AAA-type, core BER93_RS02690 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS02690 IPR019489 Clp ATPase, C-terminal BER93_RS02690 IPR004491 Heat shock protein HslU BER93_RS02715 IPR004033 UbiE/COQ5 methyltransferase BER93_RS02715 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS02715 IPR023576 UbiE/COQ5 methyltransferase, conserved site BER93_RS02720 IPR001633 EAL domain BER93_RS02720 IPR035919 EAL domain superfamily BER93_RS02720 IPR000160 GGDEF domain BER93_RS02720 IPR005330 MHYT domain BER93_RS02720 IPR035965 PAS domain superfamily BER93_RS02720 IPR029787 Nucleotide cyclase BER93_RS02725 IPR014782 Peptidase M1, membrane alanine aminopeptidase BER93_RS02725 IPR042097 Aminopeptidase N-like , N-terminal BER93_RS02725 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase BER93_RS02725 IPR034016 Aminopeptidase N-type BER93_RS02740 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site BER93_RS02740 IPR011611 Carbohydrate kinase PfkB BER93_RS02740 IPR029056 Ribokinase-like BER93_RS02745 IPR004753 Cell shape determining protein MreB BER93_RS02750 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 BER93_RS02750 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 BER93_RS02750 IPR007221 Rod shape-determining protein MreC BER93_RS02760 IPR001460 Penicillin-binding protein, transpeptidase BER93_RS02760 IPR005311 Penicillin-binding protein, dimerisation domain BER93_RS02760 IPR012338 Beta-lactamase/transpeptidase-like BER93_RS02760 IPR017790 Penicillin-binding protein 2 BER93_RS02760 IPR036138 Penicillin-binding protein, dimerisation domain superfamily BER93_RS02765 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site BER93_RS02765 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA BER93_RS02765 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB BER93_RS02770 IPR000743 Glycoside hydrolase, family 28 BER93_RS02770 IPR011050 Pectin lyase fold/virulence factor BER93_RS02770 IPR012334 Pectin lyase fold BER93_RS02770 IPR006626 Parallel beta-helix repeat BER93_RS02775 IPR011757 Lytic transglycosylase MltB BER93_RS02775 IPR031304 Transglycosylase SLT domain 2 BER93_RS02775 IPR023346 Lysozyme-like domain superfamily BER93_RS02780 IPR012997 Rare lipoprotein A BER93_RS02780 IPR007730 Sporulation-like domain BER93_RS02780 IPR036908 RlpA-like domain superfamily BER93_RS02780 IPR036680 Sporulation-like domain superfamily BER93_RS02780 IPR009009 RlpA-like protein, double-psi beta-barrel domain BER93_RS02780 IPR034718 Endolytic peptidoglycan transglycosylase RlpA BER93_RS02785 IPR012338 Beta-lactamase/transpeptidase-like BER93_RS02785 IPR015956 Penicillin-binding protein, C-terminal domain superfamily BER93_RS02785 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A BER93_RS02785 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal BER93_RS02785 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily BER93_RS02785 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal BER93_RS02795 IPR007454 Uncharacterised protein family UPF0250 BER93_RS02795 IPR027471 YbeD-like domain superfamily BER93_RS02800 IPR000544 Octanoyltransferase BER93_RS02800 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain BER93_RS02800 IPR020605 Octanoyltransferase, conserved site BER93_RS02805 IPR006638 Elp3/MiaB/NifB BER93_RS02805 IPR013785 Aldolase-type TIM barrel BER93_RS02805 IPR031691 Lipoyl synthase, N-terminal BER93_RS02805 IPR003698 Lipoyl synthase BER93_RS02805 IPR007197 Radical SAM BER93_RS02830 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS02830 IPR036034 PDZ superfamily BER93_RS02830 IPR004447 C-terminal-processing peptidase S41A BER93_RS02830 IPR005151 Tail specific protease BER93_RS02830 IPR020992 Tail specific protease, C-terminal BER93_RS02830 IPR040573 Tail specific protease, N-terminal domain BER93_RS02830 IPR001478 PDZ domain BER93_RS02875 IPR013328 6-phosphogluconate dehydrogenase, domain 2 BER93_RS02875 IPR036291 NAD(P)-binding domain superfamily BER93_RS02875 IPR006183 6-phosphogluconate dehydrogenase BER93_RS02875 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type BER93_RS02875 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding BER93_RS02875 IPR006114 6-phosphogluconate dehydrogenase, C-terminal BER93_RS02875 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS02880 IPR004104 Oxidoreductase, C-terminal BER93_RS02880 IPR036291 NAD(P)-binding domain superfamily BER93_RS02880 IPR000683 Oxidoreductase, N-terminal BER93_RS02885 IPR014004 Transport-associated and nodulation domain, bacteria BER93_RS02885 IPR007055 BON domain BER93_RS02890 IPR001294 Phytochrome BER93_RS02890 IPR029016 GAF-like domain superfamily BER93_RS02890 IPR016132 Phytochrome chromophore attachment domain BER93_RS02890 IPR005467 Histidine kinase domain BER93_RS02890 IPR013515 Phytochrome, central region BER93_RS02890 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS02890 IPR003018 GAF domain BER93_RS02890 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS02890 IPR035965 PAS domain superfamily BER93_RS02890 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS02890 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS02890 IPR013654 PAS fold-2 BER93_RS02895 IPR011006 CheY-like superfamily BER93_RS02895 IPR001789 Signal transduction response regulator, receiver domain BER93_RS02900 IPR029151 Periplasmic sensor-like domain superfamily BER93_RS02900 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS02900 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS02900 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS02900 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS02900 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS02900 IPR005467 Histidine kinase domain BER93_RS02905 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily BER93_RS02905 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK BER93_RS02910 IPR036291 NAD(P)-binding domain superfamily BER93_RS02910 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS02910 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS02935 IPR012337 Ribonuclease H-like superfamily BER93_RS02935 IPR025948 HTH-like domain BER93_RS02935 IPR001584 Integrase, catalytic core BER93_RS02935 IPR036397 Ribonuclease H superfamily BER93_RS02940 IPR002514 Transposase IS3/IS911family BER93_RS02940 IPR009057 Homeobox-like domain superfamily BER93_RS02950 IPR002514 Transposase IS3/IS911family BER93_RS02950 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS02950 IPR009057 Homeobox-like domain superfamily BER93_RS02955 IPR000524 Transcription regulator HTH, GntR BER93_RS02955 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BER93_RS02955 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS02955 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS02955 IPR011663 UbiC transcription regulator-associated BER93_RS02960 IPR036259 MFS transporter superfamily BER93_RS02960 IPR011701 Major facilitator superfamily BER93_RS02960 IPR005964 Bacterial glucose/galactose transporter BER93_RS02965 IPR023588 Transcription regulator HTH, PurR BER93_RS02965 IPR028082 Periplasmic binding protein-like I BER93_RS02965 IPR000843 LacI-type HTH domain BER93_RS02965 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS02970 IPR035466 GlmS/AgaS, SIS domain 1 BER93_RS02970 IPR035490 GlmS/FrlB, SIS domain 2 BER93_RS02970 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising BER93_RS02970 IPR001347 Sugar isomerase (SIS) BER93_RS02970 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_RS02970 IPR017932 Glutamine amidotransferase type 2 domain BER93_RS02975 IPR032466 Metal-dependent hydrolase BER93_RS02975 IPR006680 Amidohydrolase-related BER93_RS02975 IPR003764 N-acetylglucosamine-6-phosphate deacetylase BER93_RS02975 IPR011059 Metal-dependent hydrolase, composite domain superfamily BER93_RS02985 IPR003735 Metal-sensitive transcriptional repressor BER93_RS02985 IPR038390 Metal-sensitive transcriptional repressor superfamily BER93_RS02990 IPR020843 Polyketide synthase, enoylreductase domain BER93_RS02990 IPR014183 Alcohol dehydrogenase class III BER93_RS02990 IPR036291 NAD(P)-binding domain superfamily BER93_RS02990 IPR011032 GroES-like superfamily BER93_RS02990 IPR013149 Alcohol dehydrogenase, C-terminal BER93_RS02990 IPR013154 Alcohol dehydrogenase, N-terminal BER93_RS02990 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_RS02995 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V BER93_RS02995 IPR014185 Glutathione-dependent formaldehyde-activating enzyme BER93_RS02995 IPR011057 Mss4-like superfamily BER93_RS03000 IPR014186 S-formylglutathione hydrolase BER93_RS03000 IPR000801 Putative esterase BER93_RS03000 IPR029058 Alpha/Beta hydrolase fold BER93_RS03025 IPR011059 Metal-dependent hydrolase, composite domain superfamily BER93_RS03025 IPR032466 Metal-dependent hydrolase BER93_RS03025 IPR020043 Deacetylase Atu3266-like BER93_RS03025 IPR006680 Amidohydrolase-related BER93_RS03035 IPR008490 Transposase InsH, N-terminal BER93_RS03065 IPR008490 Transposase InsH, N-terminal BER93_RS03070 IPR009057 Homeobox-like domain superfamily BER93_RS03070 IPR002514 Transposase IS3/IS911family BER93_RS03080 IPR004480 Monothiol glutaredoxin-related BER93_RS03080 IPR014434 Monothiol glutaredoxin BER93_RS03080 IPR002109 Glutaredoxin BER93_RS03080 IPR036249 Thioredoxin-like superfamily BER93_RS03080 IPR033658 Glutaredoxin, PICOT-like BER93_RS03085 IPR026402 Chitooligosaccharide deacetylase NodB BER93_RS03085 IPR002509 NodB homology domain BER93_RS03085 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel BER93_RS03100 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS03100 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS03100 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS03100 IPR004839 Aminotransferase, class I/classII BER93_RS03105 IPR036640 ABC transporter type 1, transmembrane domain superfamily BER93_RS03105 IPR039421 Type I protein exporter BER93_RS03105 IPR011527 ABC transporter type 1, transmembrane domain BER93_RS03105 IPR005074 Peptidase C39, bacteriocin processing BER93_RS03105 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS03105 IPR010132 ATPase, type I secretion system, HlyB BER93_RS03105 IPR017871 ABC transporter, conserved site BER93_RS03105 IPR003439 ABC transporter-like BER93_RS03105 IPR003593 AAA+ ATPase domain BER93_RS03105 IPR039395 Peptidase C39-like A BER93_RS03110 IPR010129 Type I secretion membrane fusion protein, HlyD family BER93_RS03110 IPR006144 Secretion protein HlyD, conserved site BER93_RS03120 IPR005165 Anthrax toxin, edema factor, central BER93_RS03120 IPR018511 Hemolysin-type calcium-binding conserved site BER93_RS03120 IPR035099 Anthrax toxin, edema factor, C-terminal BER93_RS03120 IPR011049 Serralysin-like metalloprotease, C-terminal BER93_RS03120 IPR037017 Anthrax toxin, edema factor, central domain superfamily BER93_RS03120 IPR003995 RTX toxin determinant A BER93_RS03120 IPR018504 RTX N-terminal BER93_RS03120 IPR001343 RTX calcium-binding nonapeptide repeat BER93_RS03120 IPR010566 Haemolysin-type calcium binding-related BER93_RS03130 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain BER93_RS03130 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS03130 IPR004881 Ribosome biogenesis GTPase RsgA BER93_RS03130 IPR010914 RsgA GTPase domain BER93_RS03140 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_RS03140 IPR017853 Glycoside hydrolase superfamily BER93_RS03140 IPR013780 Glycosyl hydrolase, all-beta BER93_RS03150 IPR039672 Lactose permease-like BER93_RS03150 IPR018043 Sodium:galactoside symporter, conserved site BER93_RS03150 IPR036259 MFS transporter superfamily BER93_RS03155 IPR000843 LacI-type HTH domain BER93_RS03155 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS03155 IPR028082 Periplasmic binding protein-like I BER93_RS03155 IPR023588 Transcription regulator HTH, PurR BER93_RS03160 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS03160 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS03160 IPR036291 NAD(P)-binding domain superfamily BER93_RS03160 IPR011283 Acetoacetyl-CoA reductase BER93_RS03165 IPR014738 Citrate transporter BER93_RS03165 IPR004680 Citrate transporter-like domain BER93_RS03175 IPR001867 OmpR/PhoB-type DNA-binding domain BER93_RS03175 IPR011006 CheY-like superfamily BER93_RS03175 IPR001789 Signal transduction response regulator, receiver domain BER93_RS03175 IPR039420 Transcriptional regulatory protein WalR-like BER93_RS03175 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS03175 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS03180 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS03180 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS03180 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS03180 IPR005467 Histidine kinase domain BER93_RS03180 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS03180 IPR013727 Two-component sensor kinase, N-terminal BER93_RS03180 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS03190 IPR000792 Transcription regulator LuxR, C-terminal BER93_RS03190 IPR001789 Signal transduction response regulator, receiver domain BER93_RS03190 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS03190 IPR011006 CheY-like superfamily BER93_RS03200 IPR002514 Transposase IS3/IS911family BER93_RS03200 IPR009057 Homeobox-like domain superfamily BER93_RS03215 IPR009057 Homeobox-like domain superfamily BER93_RS03215 IPR002514 Transposase IS3/IS911family BER93_RS03225 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) BER93_RS03225 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS03225 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS03225 IPR005467 Histidine kinase domain BER93_RS03225 IPR029151 Periplasmic sensor-like domain superfamily BER93_RS03225 IPR033479 Double Cache domain 1 BER93_RS03225 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS03225 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS03225 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS03235 IPR001991 Sodium:dicarboxylate symporter BER93_RS03235 IPR018107 Sodium:dicarboxylate symporter, conserved site BER93_RS03235 IPR036458 Sodium:dicarboxylate symporter superfamily BER93_RS03235 IPR023954 C4-dicarboxylate transport protein BER93_RS03240 IPR012188 NAD(P)-dependent malic enzyme BER93_RS03240 IPR012302 Malic enzyme, NAD-binding BER93_RS03240 IPR037062 Malic enzyme, N-terminal domain superfamily BER93_RS03240 IPR012301 Malic enzyme, N-terminal domain BER93_RS03240 IPR015884 Malic enzyme, conserved site BER93_RS03240 IPR036291 NAD(P)-binding domain superfamily BER93_RS03240 IPR042113 Phosphate acetyltransferase, domain 1 BER93_RS03240 IPR042112 Phosphate acetyltransferase, domain 2 BER93_RS03240 IPR002505 Phosphate acetyl/butaryl transferase BER93_RS03265 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP BER93_RS03265 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase BER93_RS03265 IPR004960 Bacterial lipid A biosynthesis acyltransferase BER93_RS03270 IPR039901 3-deoxy-D-manno-octulosonic acid transferase BER93_RS03270 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily BER93_RS03270 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal BER93_RS03275 IPR003423 Outer membrane efflux protein BER93_RS03275 IPR010130 Type I secretion outer membrane protein, TolC BER93_RS03280 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase BER93_RS03280 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS03290 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS03290 IPR000847 Transcription regulator HTH, LysR BER93_RS03290 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS03295 IPR004430 3-isopropylmalate dehydratase, large subunit BER93_RS03295 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain BER93_RS03295 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 BER93_RS03295 IPR033941 3-Isopropylmalate dehydratase, catalytic domain BER93_RS03295 IPR018136 Aconitase family, 4Fe-4S cluster binding site BER93_RS03295 IPR036008 Aconitase, iron-sulfur domain BER93_RS03300 IPR004431 3-isopropylmalate dehydratase, small subunit BER93_RS03300 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER93_RS03300 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain BER93_RS03300 IPR033940 3-isopropylmalate dehydratase, swivel domain BER93_RS03305 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site BER93_RS03305 IPR024084 Isopropylmalate dehydrogenase-like domain BER93_RS03305 IPR004429 Isopropylmalate dehydrogenase BER93_RS03310 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS03310 IPR010916 TonB box, conserved site BER93_RS03310 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS03310 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS03310 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS03310 IPR010917 TonB-dependent receptor, conserved site BER93_RS03310 IPR012910 TonB-dependent receptor, plug domain BER93_RS03315 IPR008490 Transposase InsH, N-terminal BER93_RS03320 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site BER93_RS03320 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain BER93_RS03320 IPR005671 2-isopropylmalate synthase, bacterial-type BER93_RS03320 IPR000891 Pyruvate carboxyltransferase BER93_RS03320 IPR013785 Aldolase-type TIM barrel BER93_RS03320 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily BER93_RS03325 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site BER93_RS03325 IPR001926 Pyridoxal-phosphate dependent enzyme BER93_RS03325 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_RS03325 IPR005789 Threonine dehydratase, catabolic BER93_RS03335 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain BER93_RS03335 IPR012000 Thiamine pyrophosphate enzyme, central domain BER93_RS03335 IPR000399 TPP-binding enzyme, conserved site BER93_RS03335 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding BER93_RS03335 IPR029061 Thiamin diphosphate-binding fold BER93_RS03335 IPR029035 DHS-like NAD/FAD-binding domain superfamily BER93_RS03335 IPR012846 Acetolactate synthase, large subunit, biosynthetic BER93_RS03335 IPR039368 Acetolactate synthase large subunit, TPP binding domain BER93_RS03340 IPR014359 Ketol-acid reductoisomerase, prokaryotic BER93_RS03340 IPR013116 Ketol-acid reductoisomerase, N-terminal BER93_RS03340 IPR000506 Ketol-acid reductoisomerase, C-terminal BER93_RS03340 IPR013023 Ketol-acid reductoisomerase BER93_RS03340 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS03340 IPR036291 NAD(P)-binding domain superfamily BER93_RS03360 IPR037509 Phosphomethylpyrimidine synthase BER93_RS03360 IPR025747 ThiC-associated domain BER93_RS03360 IPR038521 ThiC/Bza superfamily BER93_RS03360 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B BER93_RS03370 IPR002559 Transposase, IS4-like BER93_RS03370 IPR008490 Transposase InsH, N-terminal BER93_RS03375 IPR020449 Transcription regulator HTH, AraC- type BER93_RS03375 IPR018062 HTH domain AraC-type, conserved site BER93_RS03375 IPR018060 DNA binding HTH domain, AraC-type BER93_RS03375 IPR009057 Homeobox-like domain superfamily BER93_RS03375 IPR029062 Class I glutamine amidotransferase-like BER93_RS03380 IPR010101 TonB-dependent vitamin B12 transporter BtuB BER93_RS03380 IPR010917 TonB-dependent receptor, conserved site BER93_RS03380 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS03380 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS03380 IPR012910 TonB-dependent receptor, plug domain BER93_RS03380 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS03380 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS03380 IPR010916 TonB box, conserved site BER93_RS03390 IPR036649 Inorganic pyrophosphatase superfamily BER93_RS03390 IPR008162 Inorganic pyrophosphatase BER93_RS03400 IPR004131 Pyrophosphate-energised proton pump BER93_RS03420 IPR022953 ATP-dependent 6-phosphofructokinase BER93_RS03420 IPR000023 Phosphofructokinase domain BER93_RS03420 IPR035966 Phosphofructokinase superfamily BER93_RS03420 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 BER93_RS03425 IPR033690 Adenylate kinase, conserved site BER93_RS03425 IPR000850 Adenylate kinase/UMP-CMP kinase BER93_RS03425 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS03430 IPR036615 Mur ligase, C-terminal domain superfamily BER93_RS03430 IPR000713 Mur ligase, N-terminal catalytic domain BER93_RS03430 IPR005757 Murein peptide ligase BER93_RS03430 IPR036565 Mur-like, catalytic domain superfamily BER93_RS03430 IPR013221 Mur ligase, central BER93_RS03430 IPR004101 Mur ligase, C-terminal BER93_RS03445 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER93_RS03445 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BER93_RS03455 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS03455 IPR036291 NAD(P)-binding domain superfamily BER93_RS03455 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS03465 IPR008490 Transposase InsH, N-terminal BER93_RS03465 IPR002559 Transposase, IS4-like BER93_RS03475 IPR004636 Acetylornithine/Succinylornithine transaminase family BER93_RS03475 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS03475 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS03475 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS03475 IPR005814 Aminotransferase class-III BER93_RS03480 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase BER93_RS03480 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS03480 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS03480 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS03480 IPR005814 Aminotransferase class-III BER93_RS03485 IPR013785 Aldolase-type TIM barrel BER93_RS03485 IPR036206 Thiamin phosphate synthase superfamily BER93_RS03485 IPR022998 Thiamine phosphate synthase/TenI BER93_RS03485 IPR034291 Thiamine phosphate synthase BER93_RS03490 IPR024922 Rubredoxin BER93_RS03490 IPR018527 Rubredoxin, iron-binding site BER93_RS03490 IPR024935 Rubredoxin domain BER93_RS03490 IPR024934 Rubredoxin-like domain BER93_RS03495 IPR032698 Protein SirB1, N-terminal BER93_RS03495 IPR013026 Tetratricopeptide repeat-containing domain BER93_RS03495 IPR019734 Tetratricopeptide repeat BER93_RS03495 IPR011990 Tetratricopeptide-like helical domain superfamily BER93_RS03505 IPR004788 Ribose 5-phosphate isomerase, type A BER93_RS03505 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup BER93_RS03505 IPR037171 NagB/RpiA transferase-like BER93_RS03515 IPR002698 5-formyltetrahydrofolate cyclo-ligase BER93_RS03515 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily BER93_RS03515 IPR037171 NagB/RpiA transferase-like BER93_RS03525 IPR036192 Cell division protein ZapA-like superfamily BER93_RS03525 IPR007838 Cell division protein ZapA-like BER93_RS03535 IPR011978 Uncharacterised protein family UPF0149 BER93_RS03535 IPR036255 YgfB-like superfamily BER93_RS03540 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BER93_RS03540 IPR001714 Peptidase M24, methionine aminopeptidase BER93_RS03540 IPR036005 Creatinase/aminopeptidase-like BER93_RS03540 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BER93_RS03540 IPR007865 Aminopeptidase P, N-terminal BER93_RS03540 IPR000994 Peptidase M24 BER93_RS03545 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BER93_RS03545 IPR036005 Creatinase/aminopeptidase-like BER93_RS03545 IPR000994 Peptidase M24 BER93_RS03545 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BER93_RS03545 IPR022846 Xaa-Pro dipeptidase BER93_RS03560 IPR034505 Anaerobic coproporphyrinogen-III oxidase BER93_RS03560 IPR023404 Radical SAM, alpha/beta horseshoe BER93_RS03560 IPR007197 Radical SAM BER93_RS03560 IPR004559 Heme chaperone HemW-like BER93_RS03560 IPR006638 Elp3/MiaB/NifB BER93_RS03560 IPR010723 HemN, C-terminal BER93_RS03565 IPR020922 dITP/XTP pyrophosphatase BER93_RS03565 IPR002637 Ham1-like protein BER93_RS03565 IPR029001 Inosine triphosphate pyrophosphatase-like BER93_RS03570 IPR018336 Ribonuclease PH, conserved site BER93_RS03570 IPR002381 Ribonuclease PH, bacterial-type BER93_RS03570 IPR001247 Exoribonuclease, phosphorolytic domain 1 BER93_RS03570 IPR015847 Exoribonuclease, phosphorolytic domain 2 BER93_RS03570 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS03570 IPR027408 PNPase/RNase PH domain superfamily BER93_RS03570 IPR036345 Exoribonuclease, PH domain 2 superfamily BER93_RS03575 IPR005229 Conserved hypothetical protein CHP00255 BER93_RS03575 IPR013527 YicC-like, N-terminal BER93_RS03575 IPR013551 Domain of unknown function DUF1732 BER93_RS03580 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS03580 IPR020590 Guanylate kinase, conserved site BER93_RS03580 IPR017665 Guanylate kinase BER93_RS03580 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BER93_RS03580 IPR008144 Guanylate kinase-like domain BER93_RS03585 IPR003716 DNA-directed RNA polymerase, omega subunit BER93_RS03585 IPR006110 RNA polymerase, subunit omega/K/RPB6 BER93_RS03585 IPR012293 RNA polymerase subunit, RPB6/omega BER93_RS03585 IPR036161 RPB6/omega subunit-like superfamily BER93_RS03590 IPR003607 HD/PDEase domain BER93_RS03590 IPR004811 RelA/SpoT family BER93_RS03590 IPR012675 Beta-grasp domain superfamily BER93_RS03590 IPR033655 RelA, TGS domain BER93_RS03590 IPR012676 TGS-like BER93_RS03590 IPR004095 TGS BER93_RS03590 IPR002912 ACT domain BER93_RS03590 IPR007685 RelA/SpoT BER93_RS03595 IPR035959 RutC-like superfamily BER93_RS03595 IPR006175 YjgF/YER057c/UK114 family BER93_RS03595 IPR006056 RidA family BER93_RS03595 IPR019897 RidA, conserved site BER93_RS03600 IPR033454 RecG, wedge domain BER93_RS03600 IPR012340 Nucleic acid-binding, OB-fold BER93_RS03600 IPR004609 ATP-dependent DNA helicase RecG BER93_RS03600 IPR011545 DEAD/DEAH box helicase domain BER93_RS03600 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS03600 IPR001650 Helicase, C-terminal BER93_RS03600 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS03610 IPR036452 Ribonucleoside hydrolase-like BER93_RS03610 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site BER93_RS03610 IPR023186 Inosine/uridine-preferring nucleoside hydrolase BER93_RS03610 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER93_RS03610 IPR022975 Pyrimidine-specific ribonucleoside hydrolase RihA BER93_RS03615 IPR042105 Ribosomal protein L31 superfamily BER93_RS03615 IPR002150 Ribosomal protein L31 BER93_RS03615 IPR027493 Ribosomal protein L31 type B BER93_RS03615 IPR034704 L28p-like BER93_RS03620 IPR019810 Citrate synthase active site BER93_RS03620 IPR024176 Citrate synthase, bacterial-type BER93_RS03620 IPR036969 Citrate synthase superfamily BER93_RS03620 IPR016143 Citrate synthase-like, small alpha subdomain BER93_RS03620 IPR016142 Citrate synthase-like, large alpha subdomain BER93_RS03620 IPR002020 Citrate synthase BER93_RS03620 IPR010953 Citrate synthase, type I BER93_RS03630 IPR023346 Lysozyme-like domain superfamily BER93_RS03630 IPR031376 Penicillin-binding protein, OB-like domain BER93_RS03630 IPR001264 Glycosyl transferase, family 51 BER93_RS03630 IPR001460 Penicillin-binding protein, transpeptidase BER93_RS03630 IPR036950 Penicillin binding protein transglycosylase domain BER93_RS03630 IPR012338 Beta-lactamase/transpeptidase-like BER93_RS03635 IPR003494 SHS2 domain inserted in FtsA BER93_RS03635 IPR005883 Type IV pilus assembly protein PilM BER93_RS03640 IPR007813 Fimbrial assembly PilN BER93_RS03645 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BER93_RS03645 IPR007445 Pilus assembly protein, PilO BER93_RS03650 IPR007446 Pilus assembly protein PilP BER93_RS03655 IPR001775 GspD/PilQ family BER93_RS03655 IPR005644 NolW-like BER93_RS03655 IPR038591 NolW-like superfamily BER93_RS03655 IPR004845 Type II secretion system GspD, conserved site BER93_RS03655 IPR011662 Secretin/TonB, short N-terminal domain BER93_RS03655 IPR013355 Type IV pilus secretin PilQ BER93_RS03655 IPR004846 Type II/III secretion system BER93_RS03655 IPR021731 AMIN domain BER93_RS03660 IPR002559 Transposase, IS4-like BER93_RS03660 IPR008490 Transposase InsH, N-terminal BER93_RS03690 IPR002559 Transposase, IS4-like BER93_RS03690 IPR008490 Transposase InsH, N-terminal BER93_RS03695 IPR003509 Uncharacterised protein family UPF0102 BER93_RS03695 IPR011335 Restriction endonuclease type II-like BER93_RS03695 IPR011856 tRNA endonuclease-like domain superfamily BER93_RS03705 IPR008189 rRNA small subunit methyltransferase I BER93_RS03705 IPR018063 SAM-dependent methyltransferase RsmI, conserved site BER93_RS03705 IPR000878 Tetrapyrrole methylase BER93_RS03705 IPR014777 Tetrapyrrole methylase, subdomain 1 BER93_RS03705 IPR035996 Tetrapyrrole methylase superfamily BER93_RS03705 IPR014776 Tetrapyrrole methylase, subdomain 2 BER93_RS03735 IPR020603 MraZ domain BER93_RS03735 IPR035644 MraZ, C-terminal BER93_RS03735 IPR035642 MraZ, N-terminal BER93_RS03735 IPR003444 Transcriptional regulator MraZ BER93_RS03735 IPR037914 SpoVT-AbrB domain superfamily BER93_RS03735 IPR007159 SpoVT-AbrB domain BER93_RS03735 IPR038619 MraZ superfamily BER93_RS03740 IPR002903 Ribosomal RNA small subunit methyltransferase H BER93_RS03740 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily BER93_RS03740 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS03745 IPR011922 Cell division protein FtsL BER93_RS03750 IPR005311 Penicillin-binding protein, dimerisation domain BER93_RS03750 IPR012338 Beta-lactamase/transpeptidase-like BER93_RS03750 IPR001460 Penicillin-binding protein, transpeptidase BER93_RS03750 IPR037532 Peptidoglycan D,D-transpeptidase FtsI BER93_RS03750 IPR036138 Penicillin-binding protein, dimerisation domain superfamily BER93_RS03755 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase BER93_RS03755 IPR035911 MurE/MurF, N-terminal BER93_RS03755 IPR000713 Mur ligase, N-terminal catalytic domain BER93_RS03755 IPR013221 Mur ligase, central BER93_RS03755 IPR004101 Mur ligase, C-terminal BER93_RS03755 IPR036565 Mur-like, catalytic domain superfamily BER93_RS03755 IPR036615 Mur ligase, C-terminal domain superfamily BER93_RS03760 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase BER93_RS03760 IPR004101 Mur ligase, C-terminal BER93_RS03760 IPR000713 Mur ligase, N-terminal catalytic domain BER93_RS03760 IPR013221 Mur ligase, central BER93_RS03760 IPR036615 Mur ligase, C-terminal domain superfamily BER93_RS03760 IPR036565 Mur-like, catalytic domain superfamily BER93_RS03760 IPR035911 MurE/MurF, N-terminal BER93_RS03765 IPR000715 Glycosyl transferase, family 4 BER93_RS03765 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site BER93_RS03765 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase BER93_RS03770 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA BER93_RS03770 IPR013437 Probable peptidoglycan glycosyltransferase FtsW BER93_RS03775 IPR004276 Glycosyltransferase family 28, N-terminal domain BER93_RS03775 IPR007235 Glycosyl transferase, family 28, C-terminal BER93_RS03775 IPR006009 N-acetylglucosaminyltransferase, MurG BER93_RS03780 IPR000713 Mur ligase, N-terminal catalytic domain BER93_RS03780 IPR013221 Mur ligase, central BER93_RS03780 IPR005758 UDP-N-acetylmuramate--L-alanine ligase BER93_RS03780 IPR036615 Mur ligase, C-terminal domain superfamily BER93_RS03780 IPR036565 Mur-like, catalytic domain superfamily BER93_RS03780 IPR004101 Mur ligase, C-terminal BER93_RS03785 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS03785 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site BER93_RS03785 IPR011127 D-alanine--D-alanine ligase, N-terminal domain BER93_RS03785 IPR005905 D-alanine--D-alanine ligase BER93_RS03785 IPR016185 Pre-ATP-grasp domain superfamily BER93_RS03785 IPR011761 ATP-grasp fold BER93_RS03785 IPR011095 D-alanine--D-alanine ligase, C-terminal BER93_RS03790 IPR026579 Cell division protein FtsQ BER93_RS03790 IPR005548 Cell division protein FtsQ/DivIB BER93_RS03790 IPR013685 POTRA domain, FtsQ-type BER93_RS03790 IPR034746 POTRA domain BER93_RS03795 IPR020823 Cell division protein FtsA BER93_RS03795 IPR003494 SHS2 domain inserted in FtsA BER93_RS03800 IPR000158 Cell division protein FtsZ BER93_RS03800 IPR020805 Cell division protein FtsZ, conserved site BER93_RS03800 IPR024757 Cell division protein FtsZ, C-terminal BER93_RS03800 IPR008280 Tubulin/FtsZ, C-terminal BER93_RS03800 IPR003008 Tubulin/FtsZ, GTPase domain BER93_RS03800 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain BER93_RS03800 IPR036525 Tubulin/FtsZ, GTPase domain superfamily BER93_RS03805 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal BER93_RS03805 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal BER93_RS03805 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase BER93_RS03805 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS03815 IPR018392 LysM domain BER93_RS03815 IPR016047 Peptidase M23 BER93_RS03815 IPR013731 Opacity-associated protein A, N-terminal BER93_RS03815 IPR011055 Duplicated hybrid motif BER93_RS03820 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS03820 IPR004027 SEC-C motif BER93_RS03820 IPR000185 Protein translocase subunit SecA BER93_RS03820 IPR036670 SecA, preprotein cross-linking domain superfamily BER93_RS03820 IPR036266 SecA, Wing/Scaffold superfamily BER93_RS03820 IPR011116 SecA Wing/Scaffold BER93_RS03820 IPR020937 SecA conserved site BER93_RS03820 IPR011115 SecA DEAD-like, N-terminal BER93_RS03820 IPR014018 SecA motor DEAD BER93_RS03820 IPR011130 SecA, preprotein cross-linking domain BER93_RS03830 IPR020084 NUDIX hydrolase, conserved site BER93_RS03830 IPR000086 NUDIX hydrolase domain BER93_RS03830 IPR020476 NUDIX hydrolase BER93_RS03830 IPR015797 NUDIX hydrolase-like domain superfamily BER93_RS03840 IPR003171 Methylenetetrahydrofolate reductase BER93_RS03840 IPR004621 Eukaryotic-type methylenetetrahydrofolate reductase BER93_RS03840 IPR029041 FAD-linked oxidoreductase-like BER93_RS03840 IPR004620 5,10-methylenetetrahydrofolate reductase BER93_RS03850 IPR020806 Polyketide synthase, phosphopantetheine-binding domain BER93_RS03850 IPR001227 Acyl transferase domain superfamily BER93_RS03850 IPR036736 ACP-like superfamily BER93_RS03850 IPR014043 Acyl transferase BER93_RS03850 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BER93_RS03850 IPR013149 Alcohol dehydrogenase, C-terminal BER93_RS03850 IPR013154 Alcohol dehydrogenase, N-terminal BER93_RS03850 IPR011032 GroES-like superfamily BER93_RS03850 IPR018201 Beta-ketoacyl synthase, active site BER93_RS03850 IPR013968 Polyketide synthase, ketoreductase domain BER93_RS03850 IPR014031 Beta-ketoacyl synthase, C-terminal BER93_RS03850 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BER93_RS03850 IPR036291 NAD(P)-binding domain superfamily BER93_RS03850 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER93_RS03850 IPR020807 Polyketide synthase, dehydratase domain BER93_RS03850 IPR042104 Polyketide synthase, dehydratase domain superfamily BER93_RS03850 IPR020843 Polyketide synthase, enoylreductase domain BER93_RS03850 IPR016039 Thiolase-like BER93_RS03850 IPR009081 Phosphopantetheine binding ACP domain BER93_RS03850 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_RS03850 IPR032821 Ketoacyl-synthetase, C-terminal extension BER93_RS03870 IPR008490 Transposase InsH, N-terminal BER93_RS03875 IPR002514 Transposase IS3/IS911family BER93_RS03875 IPR009057 Homeobox-like domain superfamily BER93_RS03885 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS03885 IPR001977 Dephospho-CoA kinase BER93_RS03890 IPR014032 Peptidase A24A, prepilin type IV, bacterial BER93_RS03890 IPR000045 Prepilin type IV endopeptidase, peptidase domain BER93_RS03890 IPR010627 Peptidase A24A, N-terminal BER93_RS03895 IPR018076 Type II secretion system F domain BER93_RS03895 IPR001992 Type II secretion system conserved site BER93_RS03895 IPR003004 GspF/PilC family BER93_RS03895 IPR042094 Type II secretion system F domain superfamily BER93_RS03900 IPR012902 Prokaryotic N-terminal methylation site BER93_RS03900 IPR001082 Fimbrial protein pilin BER93_RS03905 IPR013374 ATPase, type IV, pilus assembly, PilB BER93_RS03905 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS03905 IPR037257 General secretory system II, protein E, N-terminal superfamily BER93_RS03905 IPR042181 Type II secretion system, protein E, N-terminal BER93_RS03905 IPR001482 Type II/IV secretion system protein BER93_RS03905 IPR007831 General secretory system II, protein E, N-terminal BER93_RS03920 IPR003812 Fido domain BER93_RS03920 IPR036597 Fido-like domain superfamily BER93_RS03925 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_RS03925 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER93_RS03925 IPR003593 AAA+ ATPase domain BER93_RS03925 IPR011006 CheY-like superfamily BER93_RS03925 IPR009057 Homeobox-like domain superfamily BER93_RS03925 IPR002197 DNA binding HTH domain, Fis-type BER93_RS03925 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS03925 IPR001789 Signal transduction response regulator, receiver domain BER93_RS03925 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_RS03925 IPR025944 Sigma-54 interaction domain, conserved site BER93_RS03930 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS03930 IPR005467 Histidine kinase domain BER93_RS03930 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS03930 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS03930 IPR000014 PAS domain BER93_RS03930 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS03930 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS03935 IPR016102 Succinyl-CoA synthetase-like BER93_RS03935 IPR005809 Succinate--CoA synthetase, beta subunit BER93_RS03935 IPR011761 ATP-grasp fold BER93_RS03935 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site BER93_RS03935 IPR005811 ATP-citrate lyase/succinyl-CoA ligase BER93_RS03935 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS03935 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type BER93_RS03940 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site BER93_RS03940 IPR016102 Succinyl-CoA synthetase-like BER93_RS03940 IPR036291 NAD(P)-binding domain superfamily BER93_RS03940 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site BER93_RS03940 IPR005811 ATP-citrate lyase/succinyl-CoA ligase BER93_RS03940 IPR005810 Succinyl-CoA ligase, alpha subunit BER93_RS03940 IPR003781 CoA-binding BER93_RS03945 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS03945 IPR000132 Nitrilase/cyanide hydratase, conserved site BER93_RS03945 IPR003694 NAD(+) synthetase BER93_RS03945 IPR022310 NAD/GMP synthase BER93_RS03945 IPR014445 Glutamine-dependent NAD(+) synthetase BER93_RS03945 IPR003010 Carbon-nitrogen hydrolase BER93_RS03945 IPR036526 Carbon-nitrogen hydrolase superfamily BER93_RS03950 IPR011990 Tetratricopeptide-like helical domain superfamily BER93_RS03950 IPR039565 Outer membrane lipoprotein BamD-like BER93_RS03950 IPR017689 Outer membrane protein assembly factor BamD BER93_RS03955 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS03955 IPR006225 Pseudouridine synthase, RluC/RluD BER93_RS03955 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site BER93_RS03955 IPR036986 RNA-binding S4 domain superfamily BER93_RS03955 IPR006145 Pseudouridine synthase, RsuA/RluA BER93_RS03955 IPR002942 RNA-binding S4 domain BER93_RS03960 IPR038371 Multi-copper polyphenol oxidoreductase superfamily BER93_RS03960 IPR011324 Cytotoxic necrotizing factor-like, catalytic BER93_RS03960 IPR003730 Multi-copper polyphenol oxidoreductase BER93_RS03965 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BER93_RS03965 IPR017511 PQQ-dependent membrane bound dehydrogenase BER93_RS03965 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER93_RS03965 IPR002372 Pyrrolo-quinoline quinone repeat BER93_RS03985 IPR012766 Alpha,alpha-trehalose-phosphate synthase BER93_RS03985 IPR001830 Glycosyl transferase, family 20 BER93_RS03990 IPR011613 GH15-like domain BER93_RS03990 IPR012341 Six-hairpin glycosidase-like superfamily BER93_RS03990 IPR008928 Six-hairpin glycosidase superfamily BER93_RS03995 IPR023214 HAD superfamily BER93_RS03995 IPR036412 HAD-like superfamily BER93_RS03995 IPR006379 HAD-superfamily hydrolase, subfamily IIB BER93_RS03995 IPR003337 Trehalose-phosphatase BER93_RS04000 IPR010916 TonB box, conserved site BER93_RS04000 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS04000 IPR010101 TonB-dependent vitamin B12 transporter BtuB BER93_RS04000 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS04000 IPR010917 TonB-dependent receptor, conserved site BER93_RS04000 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS04000 IPR012910 TonB-dependent receptor, plug domain BER93_RS04000 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS04030 IPR000305 GIY-YIG endonuclease BER93_RS04030 IPR035901 GIY-YIG endonuclease superfamily BER93_RS04040 IPR002514 Transposase IS3/IS911family BER93_RS04040 IPR009057 Homeobox-like domain superfamily BER93_RS04055 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS04055 IPR018317 Queuosine biosynthesis protein QueC BER93_RS04085 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS04085 IPR018982 RQC domain BER93_RS04085 IPR001650 Helicase, C-terminal BER93_RS04085 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS04085 IPR011545 DEAD/DEAH box helicase domain BER93_RS04085 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial BER93_RS04085 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS04085 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain BER93_RS04085 IPR010997 HRDC-like superfamily BER93_RS04085 IPR002121 HRDC domain BER93_RS04085 IPR004589 DNA helicase, ATP-dependent, RecQ type BER93_RS04090 IPR008331 Ferritin/DPS protein domain BER93_RS04090 IPR012347 Ferritin-like BER93_RS04090 IPR023188 DNA-binding protein Dps, conserved site BER93_RS04090 IPR002177 DNA-binding protein Dps BER93_RS04090 IPR009078 Ferritin-like superfamily BER93_RS04095 IPR010222 RNA helicase HrpA BER93_RS04095 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS04095 IPR024590 RNA helicase HrpA, C-terminal BER93_RS04095 IPR001650 Helicase, C-terminal BER93_RS04095 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS04095 IPR007502 Helicase-associated domain BER93_RS04095 IPR011709 Domain of unknown function DUF1605 BER93_RS04095 IPR003593 AAA+ ATPase domain BER93_RS04095 IPR011545 DEAD/DEAH box helicase domain BER93_RS04100 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria BER93_RS04100 IPR007197 Radical SAM BER93_RS04100 IPR017200 Coenzyme PQQ synthesis protein E BER93_RS04100 IPR023885 4Fe4S-binding SPASM domain BER93_RS04100 IPR013785 Aldolase-type TIM barrel BER93_RS04105 IPR041881 Coenzyme PQQ synthesis protein D superfamily BER93_RS04105 IPR022479 Coenzyme PQQ synthesis D, bacteria BER93_RS04105 IPR008792 Coenzyme PQQ synthesis protein D BER93_RS04110 IPR039068 Pyrroloquinoline-quinone synthase-like BER93_RS04110 IPR016084 Haem oxygenase-like, multi-helical BER93_RS04110 IPR011845 Coenzyme PQQ biosynthesis protein C BER93_RS04110 IPR004305 Thiaminase-2/PQQC BER93_RS04115 IPR001279 Metallo-beta-lactamase BER93_RS04115 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BER93_RS04115 IPR011842 Coenzyme PQQ biosynthesis protein B BER93_RS04120 IPR003607 HD/PDEase domain BER93_RS04120 IPR004095 TGS BER93_RS04120 IPR012676 TGS-like BER93_RS04120 IPR002912 ACT domain BER93_RS04120 IPR033655 RelA, TGS domain BER93_RS04120 IPR007685 RelA/SpoT BER93_RS04120 IPR012675 Beta-grasp domain superfamily BER93_RS04120 IPR004811 RelA/SpoT family BER93_RS04135 IPR023346 Lysozyme-like domain superfamily BER93_RS04135 IPR001264 Glycosyl transferase, family 51 BER93_RS04135 IPR011813 Penicillin-binding protein 1B BER93_RS04135 IPR012338 Beta-lactamase/transpeptidase-like BER93_RS04135 IPR028166 Bifunctional transglycosylase second domain BER93_RS04135 IPR001460 Penicillin-binding protein, transpeptidase BER93_RS04135 IPR036950 Penicillin binding protein transglycosylase domain BER93_RS04145 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS04145 IPR006555 ATP-dependent helicase, C-terminal BER93_RS04145 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS04145 IPR006935 Helicase/UvrB, N-terminal BER93_RS04145 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type BER93_RS04150 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB BER93_RS04150 IPR000905 Gcp-like domain BER93_RS04160 IPR004218 Prokaryotic glutathione synthetase, ATP-binding BER93_RS04160 IPR004215 Prokaryotic glutathione synthetase, N-terminal BER93_RS04160 IPR011761 ATP-grasp fold BER93_RS04160 IPR016185 Pre-ATP-grasp domain superfamily BER93_RS04160 IPR006284 Glutathione synthetase, prokaryotic BER93_RS04160 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS04165 IPR001789 Signal transduction response regulator, receiver domain BER93_RS04165 IPR011006 CheY-like superfamily BER93_RS04170 IPR001789 Signal transduction response regulator, receiver domain BER93_RS04170 IPR011006 CheY-like superfamily BER93_RS04175 IPR002545 CheW-like domain BER93_RS04175 IPR039315 Chemotaxis protein CheW BER93_RS04175 IPR036061 CheW-like domain superfamily BER93_RS04180 IPR004090 Chemotaxis methyl-accepting receptor BER93_RS04180 IPR003660 HAMP domain BER93_RS04180 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS04180 IPR029095 NarX-like, N-terminal BER93_RS04185 IPR036641 HPT domain superfamily BER93_RS04185 IPR001789 Signal transduction response regulator, receiver domain BER93_RS04185 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS04185 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS04185 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS04185 IPR011006 CheY-like superfamily BER93_RS04185 IPR002545 CheW-like domain BER93_RS04185 IPR036061 CheW-like domain superfamily BER93_RS04185 IPR005467 Histidine kinase domain BER93_RS04185 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS04200 IPR016181 Acyl-CoA N-acyltransferase BER93_RS04200 IPR000182 GNAT domain BER93_RS04215 IPR036822 Copper homeostasis (CutC) domain superfamily BER93_RS04215 IPR023648 Copper homeostasis CutC domain BER93_RS04215 IPR005627 Copper homeostasis protein CutC BER93_RS04240 IPR001598 Transposase, IS30, conserved site BER93_RS04240 IPR036397 Ribonuclease H superfamily BER93_RS04240 IPR012337 Ribonuclease H-like superfamily BER93_RS04240 IPR001584 Integrase, catalytic core BER93_RS04240 IPR009057 Homeobox-like domain superfamily BER93_RS04245 IPR006531 Gp5 N-terminal BER93_RS04245 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS04245 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS04245 IPR010609 Gp5, C-terminal BER93_RS04245 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS04280 IPR002514 Transposase IS3/IS911family BER93_RS04280 IPR009057 Homeobox-like domain superfamily BER93_RS04285 IPR001584 Integrase, catalytic core BER93_RS04285 IPR036397 Ribonuclease H superfamily BER93_RS04285 IPR025948 HTH-like domain BER93_RS04285 IPR012337 Ribonuclease H-like superfamily BER93_RS04290 IPR002303 Valine-tRNA ligase BER93_RS04290 IPR002300 Aminoacyl-tRNA synthetase, class Ia BER93_RS04290 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm BER93_RS04290 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily BER93_RS04290 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding BER93_RS04290 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm BER93_RS04290 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain BER93_RS04290 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS04290 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding BER93_RS04290 IPR033705 Valyl tRNA synthetase, anticodon-binding domain BER93_RS04290 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_RS04300 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B BER93_RS04300 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal BER93_RS04300 IPR023042 Peptidase M17, leucine aminopeptidase BER93_RS04300 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal BER93_RS04310 IPR005495 Permease LptG/LptF-related BER93_RS04310 IPR030923 LPS export ABC transporter permease LptG BER93_RS04325 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_RS04325 IPR013762 Integrase-like, catalytic domain superfamily BER93_RS04325 IPR010998 Integrase/recombinase, N-terminal BER93_RS04325 IPR004107 Integrase, SAM-like, N-terminal BER93_RS04325 IPR023009 Tyrosine recombinase XerC/XerD BER93_RS04325 IPR011932 Tyrosine recombinase XerD BER93_RS04325 IPR002104 Integrase, catalytic domain BER93_RS04330 IPR013766 Thioredoxin domain BER93_RS04330 IPR036249 Thioredoxin-like superfamily BER93_RS04330 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal BER93_RS04330 IPR012336 Thioredoxin-like fold BER93_RS04330 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily BER93_RS04330 IPR033954 Disulphide bond isomerase, DsbC/G BER93_RS04330 IPR017937 Thioredoxin, conserved site BER93_RS04335 IPR029062 Class I glutamine amidotransferase-like BER93_RS04335 IPR010918 PurM-like, C-terminal domain BER93_RS04335 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain BER93_RS04335 IPR010073 Phosphoribosylformylglycinamidine synthase PurL BER93_RS04335 IPR036676 PurM-like, C-terminal domain superfamily BER93_RS04335 IPR036921 PurM-like, N-terminal domain superfamily BER93_RS04335 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily BER93_RS04335 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal BER93_RS04335 IPR017926 Glutamine amidotransferase BER93_RS04345 IPR008640 Head domain of trimeric autotransporter adhesin BER93_RS04345 IPR008635 Coiled stalk of trimeric autotransporter adhesin BER93_RS04345 IPR024973 ESPR domain BER93_RS04345 IPR011049 Serralysin-like metalloprotease, C-terminal BER93_RS04345 IPR005594 YadA-like, C-terminal BER93_RS04350 IPR000209 Peptidase S8/S53 domain BER93_RS04350 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_RS04350 IPR007280 Peptidase, C-terminal, archaeal/bacterial BER93_RS04350 IPR023827 Peptidase S8, subtilisin, Asp-active site BER93_RS04350 IPR022398 Peptidase S8, subtilisin, His-active site BER93_RS04350 IPR015500 Peptidase S8, subtilisin-related BER93_RS04350 IPR034176 Peptidase MprA-like catalytic domain BER93_RS04350 IPR036852 Peptidase S8/S53 domain superfamily BER93_RS04355 IPR013369 Type II secretion system GspE BER93_RS04355 IPR037257 General secretory system II, protein E, N-terminal superfamily BER93_RS04355 IPR001482 Type II/IV secretion system protein BER93_RS04355 IPR007831 General secretory system II, protein E, N-terminal BER93_RS04355 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS04355 IPR042181 Type II secretion system, protein E, N-terminal BER93_RS04355 IPR003593 AAA+ ATPase domain BER93_RS04360 IPR001992 Type II secretion system conserved site BER93_RS04360 IPR042094 Type II secretion system F domain superfamily BER93_RS04360 IPR018076 Type II secretion system F domain BER93_RS04360 IPR003004 GspF/PilC family BER93_RS04365 IPR010054 General secretion pathway protein G BER93_RS04365 IPR013545 Type II secretion system protein G BER93_RS04365 IPR000983 Bacterial general secretion pathway protein G-type pilin BER93_RS04365 IPR012902 Prokaryotic N-terminal methylation site BER93_RS04370 IPR002416 Type II secretion system protein H BER93_RS04370 IPR022346 General secretion pathway, GspH BER93_RS04375 IPR012902 Prokaryotic N-terminal methylation site BER93_RS04375 IPR010052 Type II secretion system protein I BER93_RS04380 IPR012902 Prokaryotic N-terminal methylation site BER93_RS04385 IPR005628 General secretion pathway protein K BER93_RS04385 IPR038072 GspK, central domain superfamily BER93_RS04390 IPR007813 Fimbrial assembly PilN BER93_RS04395 IPR034756 Type II secretion system (T2SS), protein M subtype b BER93_RS04405 IPR013356 Type II secretion system GspD BER93_RS04405 IPR038591 NolW-like superfamily BER93_RS04405 IPR005644 NolW-like BER93_RS04405 IPR001775 GspD/PilQ family BER93_RS04405 IPR004845 Type II secretion system GspD, conserved site BER93_RS04405 IPR004846 Type II/III secretion system BER93_RS04415 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS04415 IPR000524 Transcription regulator HTH, GntR BER93_RS04415 IPR017722 Phosphonate utilization transcriptional regulator PhnR BER93_RS04415 IPR011663 UbiC transcription regulator-associated BER93_RS04415 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS04415 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BER93_RS04425 IPR030149 TonB-dependent siderophore receptor FcuA/FatA BER93_RS04425 IPR012910 TonB-dependent receptor, plug domain BER93_RS04425 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS04425 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS04425 IPR039423 TonB-dependent receptor-like BER93_RS04425 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS04425 IPR010917 TonB-dependent receptor, conserved site BER93_RS04425 IPR010105 TonB-dependent siderophore receptor BER93_RS04425 IPR010916 TonB box, conserved site BER93_RS04435 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS04445 IPR007229 Nicotinate phosphoribosyltransferase family BER93_RS04445 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase BER93_RS04445 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain BER93_RS04445 IPR006406 Nicotinate phosphoribosyltransferase BER93_RS04445 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal BER93_RS04465 IPR036821 Peptide deformylase superfamily BER93_RS04465 IPR023635 Peptide deformylase BER93_RS04470 IPR022374 Energy-dependent translational throttle protein EttA BER93_RS04470 IPR017871 ABC transporter, conserved site BER93_RS04470 IPR003439 ABC transporter-like BER93_RS04470 IPR032781 ABC-transporter extension domain BER93_RS04470 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS04470 IPR003593 AAA+ ATPase domain BER93_RS04480 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site BER93_RS04480 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS04480 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS04480 IPR039429 Serine hydroxymethyltransferase-like domain BER93_RS04480 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS04480 IPR001085 Serine hydroxymethyltransferase BER93_RS04485 IPR003796 Ribonucleotide reductase regulator NrdR-like BER93_RS04485 IPR005144 ATP-cone domain BER93_RS04495 IPR002125 Cytidine and deoxycytidylate deaminase domain BER93_RS04495 IPR016192 APOBEC/CMP deaminase, zinc-binding BER93_RS04495 IPR016193 Cytidine deaminase-like BER93_RS04495 IPR024072 Dihydrofolate reductase-like domain superfamily BER93_RS04495 IPR004794 Riboflavin biosynthesis protein RibD BER93_RS04495 IPR011549 Riboflavin-specific deaminase, C-terminal BER93_RS04495 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal BER93_RS04505 IPR008490 Transposase InsH, N-terminal BER93_RS04515 IPR002559 Transposase, IS4-like BER93_RS04515 IPR008490 Transposase InsH, N-terminal BER93_RS04520 IPR000683 Oxidoreductase, N-terminal BER93_RS04520 IPR036291 NAD(P)-binding domain superfamily BER93_RS04555 IPR036291 NAD(P)-binding domain superfamily BER93_RS04555 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BER93_RS04555 IPR000043 Adenosylhomocysteinase-like BER93_RS04555 IPR042172 Adenosylhomocysteinase-like superfamily BER93_RS04555 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site BER93_RS04565 IPR021135 Phosphoenolpyruvate carboxylase BER93_RS04565 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type BER93_RS04565 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site BER93_RS04565 IPR033129 Phosphoenolpyruvate carboxylase, His active site BER93_RS04565 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily BER93_RS04585 IPR022628 S-adenosylmethionine synthetase, N-terminal BER93_RS04585 IPR022631 S-adenosylmethionine synthetase, conserved site BER93_RS04585 IPR002133 S-adenosylmethionine synthetase BER93_RS04585 IPR022636 S-adenosylmethionine synthetase superfamily BER93_RS04585 IPR022629 S-adenosylmethionine synthetase, central domain BER93_RS04585 IPR022630 S-adenosylmethionine synthetase, C-terminal BER93_RS04595 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal BER93_RS04595 IPR023506 Trans-aconitate 2-methyltransferase BER93_RS04595 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS04595 IPR041698 Methyltransferase domain 25 BER93_RS04600 IPR013785 Aldolase-type TIM barrel BER93_RS04600 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal BER93_RS04600 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 BER93_RS04600 IPR001269 tRNA-dihydrouridine synthase BER93_RS04600 IPR018517 tRNA-dihydrouridine synthase, conserved site BER93_RS04600 IPR035587 DUS-like, FMN-binding domain BER93_RS04600 IPR032887 tRNA-dihydrouridine synthase B BER93_RS04615 IPR033718 Diacylglycerol kinase, prokaryotic BER93_RS04615 IPR036945 Diacylglycerol kinase (DAGK) superfamily BER93_RS04615 IPR000829 DAGK family BER93_RS04625 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS04625 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS04625 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS04625 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS04625 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS04625 IPR013727 Two-component sensor kinase, N-terminal BER93_RS04625 IPR005467 Histidine kinase domain BER93_RS04630 IPR001789 Signal transduction response regulator, receiver domain BER93_RS04630 IPR039420 Transcriptional regulatory protein WalR-like BER93_RS04630 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS04630 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS04630 IPR001867 OmpR/PhoB-type DNA-binding domain BER93_RS04630 IPR011006 CheY-like superfamily BER93_RS04635 IPR036514 SGNH hydrolase superfamily BER93_RS04635 IPR013830 SGNH hydrolase-type esterase domain BER93_RS04640 IPR003593 AAA+ ATPase domain BER93_RS04640 IPR003439 ABC transporter-like BER93_RS04640 IPR017871 ABC transporter, conserved site BER93_RS04640 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS04660 IPR008490 Transposase InsH, N-terminal BER93_RS04680 IPR036812 NADP-dependent oxidoreductase domain superfamily BER93_RS04680 IPR023210 NADP-dependent oxidoreductase domain BER93_RS04685 IPR008276 Concentrative nucleoside transporter BER93_RS04685 IPR011657 Concentrative nucleoside transporter C-terminal domain BER93_RS04685 IPR002668 Concentrative nucleoside transporter N-terminal domain BER93_RS04685 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial BER93_RS04685 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain BER93_RS04690 IPR011877 Ribokinase BER93_RS04690 IPR029056 Ribokinase-like BER93_RS04690 IPR002139 Ribokinase/fructokinase BER93_RS04690 IPR011611 Carbohydrate kinase PfkB BER93_RS04690 IPR037171 NagB/RpiA transferase-like BER93_RS04690 IPR004788 Ribose 5-phosphate isomerase, type A BER93_RS04705 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt BER93_RS04710 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain BER93_RS04710 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily BER93_RS04710 IPR000398 Thymidylate synthase BER93_RS04710 IPR020940 Thymidylate synthase, active site BER93_RS04720 IPR001796 Dihydrofolate reductase domain BER93_RS04720 IPR017925 Dihydrofolate reductase conserved site BER93_RS04720 IPR012259 Dihydrofolate reductase BER93_RS04720 IPR024072 Dihydrofolate reductase-like domain superfamily BER93_RS04725 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) BER93_RS04725 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type BER93_RS04725 IPR029052 Metallo-dependent phosphatase-like BER93_RS04725 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase BER93_RS04730 IPR036767 ApaG domain superfamily BER93_RS04730 IPR007474 ApaG domain BER93_RS04730 IPR023065 Uncharacterised protein family ApaG BER93_RS04735 IPR011530 Ribosomal RNA adenine dimethylase BER93_RS04735 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal BER93_RS04735 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site BER93_RS04735 IPR023165 rRNA adenine dimethylase-like BER93_RS04735 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm BER93_RS04735 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS04740 IPR005255 PdxA family BER93_RS04740 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase BER93_RS04745 IPR027304 Trigger factor/SurA domain superfamily BER93_RS04745 IPR015391 SurA N-terminal BER93_RS04745 IPR023034 Peptidyl-prolyl isomerase SurA BER93_RS04745 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type BER93_RS04750 IPR005653 Organic solvent tolerance-like, N-terminal BER93_RS04750 IPR007543 LptD, C-terminal BER93_RS04750 IPR020889 LPS-assembly protein LptD BER93_RS04755 IPR023801 Histone deacetylase domain BER93_RS04755 IPR037138 Histone deacetylase domain superfamily BER93_RS04755 IPR023696 Ureohydrolase domain superfamily BER93_RS04755 IPR000286 Histone deacetylase family BER93_RS04760 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type BER93_RS04760 IPR016030 Cobalamin adenosyltransferase-like BER93_RS04760 IPR036451 Cobalamin adenosyltransferase-like superfamily BER93_RS04770 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase BER93_RS04770 IPR002938 FAD-binding domain BER93_RS04770 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS04770 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site BER93_RS04770 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 BER93_RS04775 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS04775 IPR002938 FAD-binding domain BER93_RS04775 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site BER93_RS04775 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 BER93_RS04790 IPR005119 LysR, substrate-binding BER93_RS04790 IPR012787 Pca transcription factor PcaQ BER93_RS04790 IPR000847 Transcription regulator HTH, LysR BER93_RS04790 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS04790 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS04800 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site BER93_RS04800 IPR001753 Enoyl-CoA hydratase/isomerase BER93_RS04800 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS04810 IPR005511 Senescence marker protein-30 (SMP-30) BER93_RS04810 IPR013658 SMP-30/Gluconolactonase/LRE-like region BER93_RS04810 IPR011042 Six-bladed beta-propeller, TolB-like BER93_RS04810 IPR006311 Twin-arginine translocation pathway, signal sequence BER93_RS04815 IPR000683 Oxidoreductase, N-terminal BER93_RS04815 IPR008354 Glucose-fructose oxidoreductase, bacterial BER93_RS04815 IPR036291 NAD(P)-binding domain superfamily BER93_RS04815 IPR004104 Oxidoreductase, C-terminal BER93_RS04815 IPR006311 Twin-arginine translocation pathway, signal sequence BER93_RS04820 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS04820 IPR040739 RlmM ferredoxin-like domain BER93_RS04820 IPR011224 Ribosomal RNA large subunit methyltransferase M BER93_RS04820 IPR002877 Ribosomal RNA methyltransferase FtsJ domain BER93_RS04835 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily BER93_RS04835 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS04835 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily BER93_RS04835 IPR022861 Glutamine-tRNA ligase, bacterial BER93_RS04835 IPR004514 Glutamine-tRNA synthetase BER93_RS04835 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal BER93_RS04835 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain BER93_RS04835 IPR000924 Glutamyl/glutaminyl-tRNA synthetase BER93_RS04835 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain BER93_RS04835 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_RS04855 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS04855 IPR011006 CheY-like superfamily BER93_RS04855 IPR000792 Transcription regulator LuxR, C-terminal BER93_RS04855 IPR001789 Signal transduction response regulator, receiver domain BER93_RS04860 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily BER93_RS04860 IPR002569 Peptide methionine sulphoxide reductase MsrA BER93_RS04865 IPR013785 Aldolase-type TIM barrel BER93_RS04865 IPR001585 Transaldolase/Fructose-6-phosphate aldolase BER93_RS04865 IPR018225 Transaldolase, active site BER93_RS04865 IPR004730 Transaldolase type 1 BER93_RS04870 IPR023459 Transcription elongation factor GreA/GreB family BER93_RS04870 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain BER93_RS04870 IPR028625 Regulator of nucleoside diphosphate kinase BER93_RS04870 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal BER93_RS04870 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily BER93_RS04875 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS04875 IPR000847 Transcription regulator HTH, LysR BER93_RS04875 IPR005119 LysR, substrate-binding BER93_RS04875 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS04880 IPR012336 Thioredoxin-like fold BER93_RS04880 IPR036249 Thioredoxin-like superfamily BER93_RS04880 IPR023753 FAD/NAD(P)-binding domain BER93_RS04880 IPR002109 Glutaredoxin BER93_RS04880 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site BER93_RS04880 IPR012081 Alkyl hydroperoxide reductase subunit F BER93_RS04880 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS04885 IPR013766 Thioredoxin domain BER93_RS04885 IPR036249 Thioredoxin-like superfamily BER93_RS04885 IPR019479 Peroxiredoxin, C-terminal BER93_RS04885 IPR024706 Peroxiredoxin, AhpC-type BER93_RS04885 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant BER93_RS04885 IPR017559 Alkyl hydroperoxide reductase subunit C BER93_RS04890 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific BER93_RS04890 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS04890 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_RS04890 IPR004556 Methyltransferase HemK-like BER93_RS04890 IPR007848 Methyltransferase small domain BER93_RS04890 IPR040758 Release factor glutamine methyltransferase, N-terminal domain BER93_RS04895 IPR005944 Proline iminopeptidase BER93_RS04895 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS04895 IPR002410 Peptidase S33 BER93_RS04895 IPR029058 Alpha/Beta hydrolase fold BER93_RS04910 IPR015797 NUDIX hydrolase-like domain superfamily BER93_RS04910 IPR020084 NUDIX hydrolase, conserved site BER93_RS04910 IPR000086 NUDIX hydrolase domain BER93_RS04910 IPR004385 Nucleoside diphosphate pyrophosphatase BER93_RS04915 IPR008918 Helix-hairpin-helix motif, class 2 BER93_RS04915 IPR020045 DNA polymerase I-like, H3TH domain BER93_RS04915 IPR036397 Ribonuclease H superfamily BER93_RS04915 IPR029060 PIN-like domain superfamily BER93_RS04915 IPR036279 5'-3' exonuclease, C-terminal domain superfamily BER93_RS04915 IPR002421 5'-3' exonuclease, N-terminal BER93_RS04915 IPR012337 Ribonuclease H-like superfamily BER93_RS04915 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal BER93_RS04915 IPR018320 DNA polymerase 1 BER93_RS04915 IPR002298 DNA polymerase A BER93_RS04915 IPR002562 3'-5' exonuclease domain BER93_RS04915 IPR019760 DNA-directed DNA polymerase, family A, conserved site BER93_RS04915 IPR001098 DNA-directed DNA polymerase, family A, palm domain BER93_RS04940 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site BER93_RS04940 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS04940 IPR013324 RNA polymerase sigma factor, region 3/4-like BER93_RS04940 IPR014284 RNA polymerase sigma-70 like domain BER93_RS04940 IPR039425 RNA polymerase sigma-70 like BER93_RS04940 IPR013325 RNA polymerase sigma factor, region 2 BER93_RS04940 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 BER93_RS04940 IPR007627 RNA polymerase sigma-70 region 2 BER93_RS04955 IPR005786 Branched-chain amino acid aminotransferase II BER93_RS04955 IPR033939 Branched-chain aminotransferase BER93_RS04955 IPR036038 Aminotransferase-like, PLP-dependent enzymes BER93_RS04955 IPR018300 Aminotransferase, class IV, conserved site BER93_RS04955 IPR001544 Aminotransferase class IV BER93_RS04970 IPR022398 Peptidase S8, subtilisin, His-active site BER93_RS04970 IPR007280 Peptidase, C-terminal, archaeal/bacterial BER93_RS04970 IPR000209 Peptidase S8/S53 domain BER93_RS04970 IPR015500 Peptidase S8, subtilisin-related BER93_RS04970 IPR034176 Peptidase MprA-like catalytic domain BER93_RS04970 IPR023827 Peptidase S8, subtilisin, Asp-active site BER93_RS04970 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_RS04970 IPR036852 Peptidase S8/S53 domain superfamily BER93_RS04975 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain BER93_RS04975 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily BER93_RS04975 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BER93_RS04990 IPR005025 NADPH-dependent FMN reductase-like BER93_RS04990 IPR008254 Flavodoxin/nitric oxide synthase BER93_RS04990 IPR001226 Flavodoxin, conserved site BER93_RS04990 IPR029039 Flavoprotein-like superfamily BER93_RS04990 IPR010089 Flavoprotein WrbA-like BER93_RS04995 IPR023679 Uncharacterised protein family UPF0761, bacterial BER93_RS04995 IPR017039 Virulence factor BrkB BER93_RS05000 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE BER93_RS05000 IPR013766 Thioredoxin domain BER93_RS05000 IPR017937 Thioredoxin, conserved site BER93_RS05000 IPR036249 Thioredoxin-like superfamily BER93_RS05000 IPR013740 Redoxin BER93_RS05010 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS05010 IPR016898 Polyphosphate kinase 2 BER93_RS05010 IPR022488 Polyphosphate kinase-2-related BER93_RS05010 IPR022486 Polyphosphate kinase 2, PA0141 BER93_RS05015 IPR036425 MoaB/Mog-like domain superfamily BER93_RS05015 IPR008284 Molybdenum cofactor biosynthesis, conserved site BER93_RS05015 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria BER93_RS05015 IPR001453 MoaB/Mog domain BER93_RS05015 IPR012245 Molybdenum cofactor biosynthesis protein MoaB BER93_RS05025 IPR000352 Peptide chain release factor class I BER93_RS05025 IPR005139 Peptide chain release factor BER93_RS05025 IPR004373 Peptide chain release factor 1 BER93_RS05030 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal BER93_RS05030 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain BER93_RS05030 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase BER93_RS05030 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily BER93_RS05030 IPR036291 NAD(P)-binding domain superfamily BER93_RS05030 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BER93_RS05030 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily BER93_RS05030 IPR018214 Glutamyl-tRNA reductase, conserved site BER93_RS05035 IPR019734 Tetratricopeptide repeat BER93_RS05035 IPR011990 Tetratricopeptide-like helical domain superfamily BER93_RS05035 IPR013026 Tetratricopeptide repeat-containing domain BER93_RS05040 IPR004565 Outer membrane lipoprotein LolB BER93_RS05040 IPR029046 Lipoprotein localisation LolA/LolB/LppX BER93_RS05045 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS05045 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase BER93_RS05045 IPR036554 GHMP kinase, C-terminal domain superfamily BER93_RS05045 IPR013750 GHMP kinase, C-terminal domain BER93_RS05045 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS05045 IPR006204 GHMP kinase N-terminal domain BER93_RS05055 IPR029057 Phosphoribosyltransferase-like BER93_RS05055 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site BER93_RS05055 IPR000836 Phosphoribosyltransferase domain BER93_RS05055 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type BER93_RS05055 IPR005946 Ribose-phosphate pyrophosphokinase BER93_RS05055 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain BER93_RS05060 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily BER93_RS05060 IPR020057 Ribosomal protein L25, beta domain BER93_RS05060 IPR029751 Ribosomal protein L25 BER93_RS05060 IPR020055 Ribosomal protein L25, short-form BER93_RS05060 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal BER93_RS05060 IPR001021 Ribosomal protein L25, long-form BER93_RS05060 IPR037121 Ribosomal protein L25, C-terminal BER93_RS05065 IPR001328 Peptidyl-tRNA hydrolase BER93_RS05065 IPR036416 Peptidyl-tRNA hydrolase superfamily BER93_RS05065 IPR018171 Peptidyl-tRNA hydrolase, conserved site BER93_RS05070 IPR006073 GTP binding domain BER93_RS05070 IPR023192 TGS-like domain superfamily BER93_RS05070 IPR013029 YchF, C-terminal domain BER93_RS05070 IPR004095 TGS BER93_RS05070 IPR041706 YchF, N-terminal BER93_RS05070 IPR012676 TGS-like BER93_RS05070 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS05070 IPR012675 Beta-grasp domain superfamily BER93_RS05070 IPR031167 OBG-type guanine nucleotide-binding (G) domain BER93_RS05070 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 BER93_RS05090 IPR031157 Tr-type G domain, conserved site BER93_RS05090 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS05090 IPR005225 Small GTP-binding protein domain BER93_RS05090 IPR000795 Transcription factor, GTP-binding domain BER93_RS05090 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS05090 IPR033720 Elongation factor Tu, domain 2 BER93_RS05090 IPR004161 Translation elongation factor EFTu-like, domain 2 BER93_RS05090 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain BER93_RS05090 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BER93_RS05090 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle BER93_RS05090 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BER93_RS05100 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit BER93_RS05100 IPR005807 SecE subunit of protein translocation complex, bacterial-like BER93_RS05100 IPR038379 SecE superfamily BER93_RS05105 IPR005824 KOW BER93_RS05105 IPR036735 NusG, N-terminal domain superfamily BER93_RS05105 IPR008991 Translation protein SH3-like domain superfamily BER93_RS05105 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site BER93_RS05105 IPR001062 Transcription antitermination protein, NusG BER93_RS05105 IPR014722 Ribosomal protein L2, domain 2 BER93_RS05105 IPR006645 NusG, N-terminal BER93_RS05110 IPR020785 Ribosomal protein L11, conserved site BER93_RS05110 IPR036769 Ribosomal protein L11, C-terminal domain superfamily BER93_RS05110 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily BER93_RS05110 IPR006519 Ribosomal protein L11, bacterial-type BER93_RS05110 IPR020784 Ribosomal protein L11, N-terminal BER93_RS05110 IPR000911 Ribosomal protein L11/L12 BER93_RS05110 IPR020783 Ribosomal protein L11, C-terminal BER93_RS05115 IPR023673 Ribosomal protein L1, conserved site BER93_RS05115 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich BER93_RS05115 IPR023674 Ribosomal protein L1-like BER93_RS05115 IPR005878 Ribosomal protein L1, bacterial-type BER93_RS05115 IPR002143 Ribosomal protein L1 BER93_RS05115 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein BER93_RS05120 IPR022973 Ribosomal protein L10 BER93_RS05120 IPR001790 Ribosomal protein L10P BER93_RS05125 IPR013823 Ribosomal protein L7/L12, C-terminal BER93_RS05125 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BER93_RS05125 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily BER93_RS05125 IPR008932 Ribosomal protein L7/L12, oligomerisation BER93_RS05125 IPR000206 Ribosomal protein L7/L12 BER93_RS05130 IPR007645 RNA polymerase Rpb2, domain 3 BER93_RS05130 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily BER93_RS05130 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain BER93_RS05130 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type BER93_RS05130 IPR007121 RNA polymerase, beta subunit, conserved site BER93_RS05130 IPR014724 RNA polymerase Rpb2, OB-fold BER93_RS05130 IPR007641 RNA polymerase Rpb2, domain 7 BER93_RS05130 IPR037034 RNA polymerase Rpb2, domain 2 superfamily BER93_RS05130 IPR007642 RNA polymerase Rpb2, domain 2 BER93_RS05130 IPR007644 RNA polymerase, beta subunit, protrusion BER93_RS05130 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain BER93_RS05130 IPR015712 DNA-directed RNA polymerase, subunit 2 BER93_RS05135 IPR038120 RNA polymerase Rpb1, funnel domain superfamily BER93_RS05135 IPR007081 RNA polymerase Rpb1, domain 5 BER93_RS05135 IPR007083 RNA polymerase Rpb1, domain 4 BER93_RS05135 IPR007080 RNA polymerase Rpb1, domain 1 BER93_RS05135 IPR006592 RNA polymerase, N-terminal BER93_RS05135 IPR042102 RNA polymerase Rpb1, domain 3 superfamily BER93_RS05135 IPR012754 DNA-directed RNA polymerase, subunit beta-prime BER93_RS05135 IPR000722 RNA polymerase, alpha subunit BER93_RS05135 IPR007066 RNA polymerase Rpb1, domain 3 BER93_RS05140 IPR012340 Nucleic acid-binding, OB-fold BER93_RS05140 IPR006032 Ribosomal protein S12/S23 BER93_RS05140 IPR005679 Ribosomal protein S12, bacterial-type BER93_RS05145 IPR020606 Ribosomal protein S7, conserved site BER93_RS05145 IPR005717 Ribosomal protein S7, bacterial/organellar-type BER93_RS05145 IPR000235 Ribosomal protein S5/S7 BER93_RS05145 IPR036823 Ribosomal protein S7 domain superfamily BER93_RS05145 IPR023798 Ribosomal protein S7 domain BER93_RS05150 IPR005517 Translation elongation factor EFG/EF2, domain IV BER93_RS05150 IPR000795 Transcription factor, GTP-binding domain BER93_RS05150 IPR009022 Elongation factor G, domain III BER93_RS05150 IPR035647 EF-G domain III/V-like BER93_RS05150 IPR035649 EFG, domain V BER93_RS05150 IPR000640 Elongation factor EFG, domain V-like BER93_RS05150 IPR004161 Translation elongation factor EFTu-like, domain 2 BER93_RS05150 IPR004540 Translation elongation factor EFG/EF2 BER93_RS05150 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS05150 IPR041095 Elongation Factor G, domain II BER93_RS05150 IPR005225 Small GTP-binding protein domain BER93_RS05150 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS05150 IPR031157 Tr-type G domain, conserved site BER93_RS05150 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS05150 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS05155 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BER93_RS05155 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle BER93_RS05155 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BER93_RS05155 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain BER93_RS05155 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS05155 IPR000795 Transcription factor, GTP-binding domain BER93_RS05155 IPR005225 Small GTP-binding protein domain BER93_RS05155 IPR004161 Translation elongation factor EFTu-like, domain 2 BER93_RS05155 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS05155 IPR033720 Elongation factor Tu, domain 2 BER93_RS05155 IPR031157 Tr-type G domain, conserved site BER93_RS05160 IPR036838 Ribosomal protein S10 domain superfamily BER93_RS05160 IPR001848 Ribosomal protein S10 BER93_RS05160 IPR018268 Ribosomal protein S10, conserved site BER93_RS05160 IPR027486 Ribosomal protein S10 domain BER93_RS05165 IPR000597 Ribosomal protein L3 BER93_RS05165 IPR019927 Ribosomal protein L3, bacterial/organelle-type BER93_RS05165 IPR019926 Ribosomal protein L3, conserved site BER93_RS05165 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS05170 IPR002136 Ribosomal protein L4/L1e BER93_RS05170 IPR013005 50S ribosomal protein uL4 BER93_RS05170 IPR023574 Ribosomal protein L4 domain superfamily BER93_RS05175 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BER93_RS05175 IPR013025 Ribosomal protein L25/L23 BER93_RS05175 IPR012678 Ribosomal protein L23/L15e core domain superfamily BER93_RS05180 IPR014722 Ribosomal protein L2, domain 2 BER93_RS05180 IPR022671 Ribosomal protein L2, conserved site BER93_RS05180 IPR014726 Ribosomal protein L2, domain 3 BER93_RS05180 IPR008991 Translation protein SH3-like domain superfamily BER93_RS05180 IPR005880 Ribosomal protein L2, bacterial/organellar-type BER93_RS05180 IPR022669 Ribosomal protein L2, C-terminal BER93_RS05180 IPR012340 Nucleic acid-binding, OB-fold BER93_RS05180 IPR022666 Ribosomal Proteins L2, RNA binding domain BER93_RS05180 IPR002171 Ribosomal protein L2 BER93_RS05185 IPR005732 Ribosomal protein S19, bacterial-type BER93_RS05185 IPR002222 Ribosomal protein S19/S15 BER93_RS05185 IPR023575 Ribosomal protein S19, superfamily BER93_RS05185 IPR020934 Ribosomal protein S19 conserved site BER93_RS05190 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type BER93_RS05190 IPR001063 Ribosomal protein L22/L17 BER93_RS05190 IPR036394 Ribosomal protein L22/L17 superfamily BER93_RS05190 IPR018260 Ribosomal protein L22/L17, conserved site BER93_RS05195 IPR009019 K homology domain superfamily, prokaryotic type BER93_RS05195 IPR004087 K Homology domain BER93_RS05195 IPR018280 Ribosomal protein S3, conserved site BER93_RS05195 IPR036419 Ribosomal protein S3, C-terminal domain superfamily BER93_RS05195 IPR001351 Ribosomal protein S3, C-terminal BER93_RS05195 IPR005704 Ribosomal protein S3, bacterial-type BER93_RS05195 IPR004044 K Homology domain, type 2 BER93_RS05195 IPR015946 K homology domain-like, alpha/beta BER93_RS05200 IPR016180 Ribosomal protein L10e/L16 BER93_RS05200 IPR000114 Ribosomal protein L16 BER93_RS05200 IPR020798 Ribosomal protein L16, conserved site BER93_RS05200 IPR036920 Ribosomal protein L10e/L16 superfamily BER93_RS05205 IPR001854 Ribosomal protein L29/L35 BER93_RS05205 IPR036049 Ribosomal protein L29/L35 superfamily BER93_RS05210 IPR012340 Nucleic acid-binding, OB-fold BER93_RS05210 IPR019984 30S ribosomal protein S17 BER93_RS05210 IPR000266 Ribosomal protein S17/S11 BER93_RS05215 IPR005745 Ribosomal protein L14P, bacterial-type BER93_RS05215 IPR019972 Ribosomal protein L14P, conserved site BER93_RS05215 IPR036853 Ribosomal protein L14 superfamily BER93_RS05215 IPR000218 Ribosomal protein L14P BER93_RS05220 IPR005824 KOW BER93_RS05220 IPR008991 Translation protein SH3-like domain superfamily BER93_RS05220 IPR041988 Ribosomal Protein L26/L24, KOW domain BER93_RS05220 IPR003256 Ribosomal protein L24 BER93_RS05220 IPR014722 Ribosomal protein L2, domain 2 BER93_RS05225 IPR020930 Ribosomal protein L5, bacterial-type BER93_RS05225 IPR031309 Ribosomal protein L5, C-terminal BER93_RS05225 IPR020929 Ribosomal protein L5, conserved site BER93_RS05225 IPR022803 Ribosomal protein L5 domain superfamily BER93_RS05225 IPR031310 Ribosomal protein L5, N-terminal BER93_RS05225 IPR002132 Ribosomal protein L5 BER93_RS05230 IPR023036 Ribosomal protein S14, bacterial/plastid BER93_RS05230 IPR001209 Ribosomal protein S14 BER93_RS05235 IPR035987 Ribosomal protein S8 superfamily BER93_RS05235 IPR000630 Ribosomal protein S8 BER93_RS05240 IPR002358 Ribosomal protein L6, conserved site BER93_RS05240 IPR019906 Ribosomal protein L6, bacterial-type BER93_RS05240 IPR000702 Ribosomal protein L6 BER93_RS05240 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily BER93_RS05240 IPR020040 Ribosomal protein L6, alpha-beta domain BER93_RS05245 IPR004389 Ribosomal protein L18, bacterial-type BER93_RS05245 IPR005484 Ribosomal protein L18 BER93_RS05250 IPR013810 Ribosomal protein S5, N-terminal BER93_RS05250 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS05250 IPR005712 Ribosomal protein S5, bacterial-type BER93_RS05250 IPR018192 Ribosomal protein S5, N-terminal, conserved site BER93_RS05250 IPR005324 Ribosomal protein S5, C-terminal BER93_RS05250 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS05250 IPR000851 Ribosomal protein S5 BER93_RS05255 IPR005996 Ribosomal protein L30, bacterial-type BER93_RS05255 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily BER93_RS05255 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain BER93_RS05260 IPR021131 Ribosomal protein L18e/L15P BER93_RS05260 IPR036227 Ribosomal L18e/L15P superfamily BER93_RS05260 IPR030878 Ribosomal protein L15 BER93_RS05260 IPR001196 Ribosomal protein L15, conserved site BER93_RS05260 IPR005749 Ribosomal protein L15, bacterial-type BER93_RS05265 IPR023201 SecY domain superfamily BER93_RS05265 IPR002208 SecY/SEC61-alpha family BER93_RS05265 IPR026593 Protein translocase subunit SecY BER93_RS05265 IPR030659 SecY conserved site BER93_RS05270 IPR027437 30s ribosomal protein S13, C-terminal BER93_RS05270 IPR001892 Ribosomal protein S13 BER93_RS05270 IPR010979 Ribosomal protein S13-like, H2TH BER93_RS05270 IPR018269 Ribosomal protein S13, conserved site BER93_RS05270 IPR019980 Ribosomal protein S13, bacterial-type BER93_RS05275 IPR036967 Ribosomal protein S11 superfamily BER93_RS05275 IPR018102 Ribosomal S11, conserved site BER93_RS05275 IPR019981 Ribosomal protein S11, bacterial-type BER93_RS05275 IPR001971 Ribosomal protein S11 BER93_RS05280 IPR036986 RNA-binding S4 domain superfamily BER93_RS05280 IPR018079 Ribosomal protein S4, conserved site BER93_RS05280 IPR022801 Ribosomal protein S4/S9 BER93_RS05280 IPR002942 RNA-binding S4 domain BER93_RS05280 IPR001912 Ribosomal protein S4/S9, N-terminal BER93_RS05280 IPR005709 Ribosomal protein S4, bacterial-type BER93_RS05285 IPR011773 DNA-directed RNA polymerase, alpha subunit BER93_RS05285 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type BER93_RS05285 IPR011262 DNA-directed RNA polymerase, insert domain BER93_RS05285 IPR036643 DNA-directed RNA polymerase, insert domain superfamily BER93_RS05285 IPR036603 RNA polymerase, RBP11-like subunit BER93_RS05285 IPR011260 RNA polymerase, alpha subunit, C-terminal BER93_RS05290 IPR036373 Ribosomal protein L17 superfamily BER93_RS05290 IPR000456 Ribosomal protein L17 BER93_RS05295 IPR003752 Disulphide bond formation protein DsbB/BdbC BER93_RS05295 IPR022920 Disulphide bond formation protein DsbB BER93_RS05295 IPR023380 DsbB-like superfamily BER93_RS05315 IPR029058 Alpha/Beta hydrolase fold BER93_RS05315 IPR002018 Carboxylesterase, type B BER93_RS05315 IPR019826 Carboxylesterase type B, active site BER93_RS05340 IPR001185 Large-conductance mechanosensitive channel BER93_RS05340 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L BER93_RS05340 IPR019823 Large-conductance mechanosensitive channel, conserved site BER93_RS05340 IPR036019 Gated mechanosensitive channel BER93_RS05345 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily BER93_RS05345 IPR011234 Fumarylacetoacetase-like, C-terminal BER93_RS05355 IPR004680 Citrate transporter-like domain BER93_RS05355 IPR031312 Sodium/sulphate symporter, conserved site BER93_RS05355 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily BER93_RS05355 IPR006037 Regulator of K+ conductance, C-terminal BER93_RS05360 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type BER93_RS05360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS05365 IPR013785 Aldolase-type TIM barrel BER93_RS05365 IPR008867 Thiazole synthase BER93_RS05365 IPR033983 Thiazole synthase ThiG BER93_RS05385 IPR025166 Integrase, DNA-binding domain BER93_RS05385 IPR013762 Integrase-like, catalytic domain superfamily BER93_RS05385 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_RS05385 IPR002104 Integrase, catalytic domain BER93_RS05385 IPR010998 Integrase/recombinase, N-terminal BER93_RS05385 IPR038488 Integrase, DNA-binding domain superfamily BER93_RS05385 IPR004107 Integrase, SAM-like, N-terminal BER93_RS05410 IPR001387 Cro/C1-type helix-turn-helix domain BER93_RS05410 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS05430 IPR012337 Ribonuclease H-like superfamily BER93_RS05430 IPR036397 Ribonuclease H superfamily BER93_RS05430 IPR001584 Integrase, catalytic core BER93_RS05430 IPR025948 HTH-like domain BER93_RS05435 IPR002514 Transposase IS3/IS911family BER93_RS05435 IPR009057 Homeobox-like domain superfamily BER93_RS05445 IPR001610 PAC motif BER93_RS05445 IPR035919 EAL domain superfamily BER93_RS05445 IPR000160 GGDEF domain BER93_RS05445 IPR029787 Nucleotide cyclase BER93_RS05445 IPR001633 EAL domain BER93_RS05445 IPR013656 PAS fold-4 BER93_RS05445 IPR013655 PAS fold-3 BER93_RS05445 IPR000700 PAS-associated, C-terminal BER93_RS05445 IPR035965 PAS domain superfamily BER93_RS05445 IPR000014 PAS domain BER93_RS05520 IPR003688 Type IV secretion system protein TraG/VirD4 BER93_RS05520 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS05545 IPR005074 Peptidase C39, bacteriocin processing BER93_RS05545 IPR036640 ABC transporter type 1, transmembrane domain superfamily BER93_RS05545 IPR033838 Colicin V processing peptidase BER93_RS05545 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS05545 IPR017871 ABC transporter, conserved site BER93_RS05545 IPR003439 ABC transporter-like BER93_RS05545 IPR039421 Type I protein exporter BER93_RS05545 IPR003593 AAA+ ATPase domain BER93_RS05545 IPR011527 ABC transporter type 1, transmembrane domain BER93_RS05585 IPR009057 Homeobox-like domain superfamily BER93_RS05585 IPR002514 Transposase IS3/IS911family BER93_RS05615 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BER93_RS05615 IPR001647 DNA-binding HTH domain, TetR-type BER93_RS05615 IPR039538 BetI-type transcriptional repressor, C-terminal BER93_RS05615 IPR017757 Transcriptional repressor BetI BER93_RS05615 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BER93_RS05615 IPR009057 Homeobox-like domain superfamily BER93_RS05620 IPR002156 Ribonuclease H domain BER93_RS05620 IPR036397 Ribonuclease H superfamily BER93_RS05620 IPR014636 RNase H, phosphoglycerate mutase domain-containing BER93_RS05620 IPR013078 Histidine phosphatase superfamily, clade-1 BER93_RS05620 IPR029033 Histidine phosphatase superfamily BER93_RS05620 IPR012337 Ribonuclease H-like superfamily BER93_RS05625 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase BER93_RS05625 IPR029056 Ribokinase-like BER93_RS05645 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS05645 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS05645 IPR036291 NAD(P)-binding domain superfamily BER93_RS05655 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site BER93_RS05655 IPR005982 Thioredoxin reductase BER93_RS05655 IPR023753 FAD/NAD(P)-binding domain BER93_RS05655 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS05675 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_RS05675 IPR029028 Alpha/beta knot methyltransferases BER93_RS05675 IPR006700 Ribosomal RNA small subunit methyltransferase E BER93_RS05675 IPR015947 PUA-like superfamily BER93_RS05680 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS05680 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS05680 IPR005814 Aminotransferase class-III BER93_RS05680 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS05680 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA BER93_RS05685 IPR015797 NUDIX hydrolase-like domain superfamily BER93_RS05685 IPR020084 NUDIX hydrolase, conserved site BER93_RS05685 IPR000086 NUDIX hydrolase domain BER93_RS05690 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ BER93_RS05690 IPR020550 Inositol monophosphatase, conserved site BER93_RS05690 IPR020583 Inositol monophosphatase, metal-binding site BER93_RS05690 IPR000760 Inositol monophosphatase-like BER93_RS05695 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BER93_RS05695 IPR011551 NTP pyrophosphohydrolase MazG BER93_RS05700 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 BER93_RS05700 IPR006223 Glycine cleavage system T protein BER93_RS05700 IPR022903 Glycine cleavage system T protein, bacteria BER93_RS05700 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal BER93_RS05700 IPR028896 Aminomethyltransferase-like BER93_RS05700 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain BER93_RS05700 IPR006222 Aminomethyltransferase, folate-binding domain BER93_RS05705 IPR000089 Biotin/lipoyl attachment BER93_RS05705 IPR002930 Glycine cleavage system H-protein BER93_RS05705 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER93_RS05705 IPR017453 Glycine cleavage system H-protein, subgroup BER93_RS05705 IPR033753 Glycine cleavage system H-protein/Simiate BER93_RS05705 IPR011053 Single hybrid motif BER93_RS05730 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily BER93_RS05730 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily BER93_RS05730 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal BER93_RS05730 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_RS05730 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_RS05730 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type BER93_RS05740 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BER93_RS05740 IPR009057 Homeobox-like domain superfamily BER93_RS05740 IPR001647 DNA-binding HTH domain, TetR-type BER93_RS05755 IPR008490 Transposase InsH, N-terminal BER93_RS05765 IPR002559 Transposase, IS4-like BER93_RS05775 IPR002514 Transposase IS3/IS911family BER93_RS05775 IPR009057 Homeobox-like domain superfamily BER93_RS05785 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily BER93_RS05785 IPR016153 Heat shock protein Hsp33, N-terminal BER93_RS05785 IPR016154 Heat shock protein Hsp33, C-terminal BER93_RS05785 IPR000397 Heat shock protein Hsp33 BER93_RS05790 IPR001264 Glycosyl transferase, family 51 BER93_RS05790 IPR011812 Biosynthetic peptidoglycan transglycosylase BER93_RS05790 IPR023346 Lysozyme-like domain superfamily BER93_RS05790 IPR036950 Penicillin binding protein transglycosylase domain BER93_RS05795 IPR001173 Glycosyltransferase 2-like BER93_RS05795 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS05800 IPR015875 IMP dehydrogenase / GMP reductase, conserved site BER93_RS05800 IPR001093 IMP dehydrogenase/GMP reductase BER93_RS05800 IPR000644 CBS domain BER93_RS05800 IPR013785 Aldolase-type TIM barrel BER93_RS05800 IPR005990 Inosine-5'-monophosphate dehydrogenase BER93_RS05805 IPR007844 AsmA BER93_RS05810 IPR005744 Hly-III BER93_RS05810 IPR004254 AdipoR/Haemolysin-III-related BER93_RS05815 IPR004548 Peptide chain release factor 3 BER93_RS05815 IPR032090 Peptide chain release factor 3, C-terminal BER93_RS05815 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily BER93_RS05815 IPR041732 Peptide chain release factor 3, GTP-binding domain BER93_RS05815 IPR031157 Tr-type G domain, conserved site BER93_RS05815 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS05815 IPR005225 Small GTP-binding protein domain BER93_RS05815 IPR000795 Transcription factor, GTP-binding domain BER93_RS05815 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS05815 IPR035647 EF-G domain III/V-like BER93_RS05830 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS05830 IPR008220 Homoserine/serine acetyltransferase MetX-like BER93_RS05830 IPR029058 Alpha/Beta hydrolase fold BER93_RS05835 IPR011821 O-succinylhomoserine (thiol)-lyase BER93_RS05835 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS05835 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme BER93_RS05835 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS05835 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS05840 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding BER93_RS05840 IPR001048 Aspartate/glutamate/uridylate kinase BER93_RS05840 IPR036291 NAD(P)-binding domain superfamily BER93_RS05840 IPR001341 Aspartate kinase BER93_RS05840 IPR018042 Aspartate kinase, conserved site BER93_RS05840 IPR019811 Homoserine dehydrogenase, conserved site BER93_RS05840 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain BER93_RS05840 IPR001342 Homoserine dehydrogenase, catalytic BER93_RS05840 IPR036393 Acetylglutamate kinase-like superfamily BER93_RS05840 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I BER93_RS05845 IPR017727 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, BphD BER93_RS05845 IPR000639 Epoxide hydrolase-like BER93_RS05845 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS05845 IPR029058 Alpha/Beta hydrolase fold BER93_RS05855 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS05855 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS05855 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS05855 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme BER93_RS05880 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER93_RS05880 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BER93_RS05880 IPR023480 Uncharacterised protein family UPF0312/YceI BER93_RS05885 IPR036641 HPT domain superfamily BER93_RS05885 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS05885 IPR011006 CheY-like superfamily BER93_RS05885 IPR003660 HAMP domain BER93_RS05885 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS05885 IPR005467 Histidine kinase domain BER93_RS05885 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS05885 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS05885 IPR033414 Periplasmic sensor domain BER93_RS05885 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS05885 IPR001789 Signal transduction response regulator, receiver domain BER93_RS05885 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS05900 IPR011013 Galactose mutarotase-like domain superfamily BER93_RS05900 IPR018052 Aldose 1-epimerase, conserved site BER93_RS05900 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase BER93_RS05900 IPR014718 Glycoside hydrolase-type carbohydrate-binding BER93_RS05900 IPR015443 Aldose 1-epimerase BER93_RS05905 IPR017562 Cytochrome c-type biogenesis protein CcsA BER93_RS05905 IPR002541 Cytochrome c assembly protein BER93_RS05910 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily BER93_RS05910 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily BER93_RS05910 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain BER93_RS05910 IPR022941 Signal recognition particle, SRP54 subunit BER93_RS05910 IPR004780 Signal recognition particle protein BER93_RS05910 IPR004125 Signal recognition particle, SRP54 subunit, M-domain BER93_RS05910 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS05910 IPR013822 Signal recognition particle SRP54, helical bundle BER93_RS05910 IPR003593 AAA+ ATPase domain BER93_RS05920 IPR004136 Nitronate monooxygenase BER93_RS05920 IPR013785 Aldolase-type TIM barrel BER93_RS05930 IPR020592 Ribosomal protein S16, conserved site BER93_RS05930 IPR000307 Ribosomal protein S16 BER93_RS05930 IPR023803 Ribosomal protein S16 domain superfamily BER93_RS05935 IPR036976 RimM, N-terminal domain superfamily BER93_RS05935 IPR002676 RimM, N-terminal BER93_RS05935 IPR011033 PRC-barrel-like superfamily BER93_RS05935 IPR027275 PRC-barrel domain BER93_RS05935 IPR011961 16S rRNA processing protein RimM BER93_RS05935 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS05940 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_RS05940 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal BER93_RS05940 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria BER93_RS05940 IPR029028 Alpha/beta knot methyltransferases BER93_RS05940 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain BER93_RS05945 IPR001857 Ribosomal protein L19 BER93_RS05945 IPR018257 Ribosomal protein L19, conserved site BER93_RS05945 IPR008991 Translation protein SH3-like domain superfamily BER93_RS05945 IPR038657 Ribosomal protein L19 superfamily BER93_RS05950 IPR002528 Multi antimicrobial extrusion protein BER93_RS05955 IPR002942 RNA-binding S4 domain BER93_RS05955 IPR025708 Heat shock protein 15 BER93_RS05955 IPR036986 RNA-binding S4 domain superfamily BER93_RS05960 IPR008490 Transposase InsH, N-terminal BER93_RS05985 IPR029787 Nucleotide cyclase BER93_RS05985 IPR000160 GGDEF domain BER93_RS06000 IPR012676 TGS-like BER93_RS06000 IPR002320 Threonine-tRNA ligase, class IIa BER93_RS06000 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily BER93_RS06000 IPR004095 TGS BER93_RS06000 IPR012675 Beta-grasp domain superfamily BER93_RS06000 IPR012947 Threonyl/alanyl tRNA synthetase, SAD BER93_RS06000 IPR006195 Aminoacyl-tRNA synthetase, class II BER93_RS06000 IPR004154 Anticodon-binding BER93_RS06000 IPR036621 Anticodon-binding domain superfamily BER93_RS06000 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) BER93_RS06000 IPR033728 Threonine-tRNA ligase catalytic core domain BER93_RS06005 IPR019814 Translation initiation factor 3, N-terminal BER93_RS06005 IPR019815 Translation initiation factor 3, C-terminal BER93_RS06005 IPR001288 Translation initiation factor 3 BER93_RS06005 IPR019813 Translation initiation factor 3, conserved site BER93_RS06005 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily BER93_RS06005 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily BER93_RS06010 IPR001706 Ribosomal protein L35, non-mitochondrial BER93_RS06010 IPR018265 Ribosomal protein L35, conserved site BER93_RS06010 IPR037229 Ribosomal protein L35 superfamily BER93_RS06010 IPR021137 Ribosomal protein L35 BER93_RS06015 IPR005813 Ribosomal protein L20 BER93_RS06015 IPR035566 Ribosomal protein L20, C-terminal BER93_RS06020 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial BER93_RS06020 IPR002319 Phenylalanyl-tRNA synthetase BER93_RS06020 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal BER93_RS06020 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm BER93_RS06020 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit BER93_RS06020 IPR006195 Aminoacyl-tRNA synthetase, class II BER93_RS06025 IPR005147 tRNA synthetase, B5-domain BER93_RS06025 IPR005146 B3/B4 tRNA-binding domain BER93_RS06025 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit BER93_RS06025 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 BER93_RS06025 IPR009061 Putative DNA-binding domain superfamily BER93_RS06025 IPR002547 tRNA-binding domain BER93_RS06025 IPR012340 Nucleic acid-binding, OB-fold BER93_RS06025 IPR005121 Ferrodoxin-fold anticodon-binding domain BER93_RS06025 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily BER93_RS06025 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain BER93_RS06025 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain BER93_RS06030 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily BER93_RS06030 IPR005684 Integration host factor, alpha subunit BER93_RS06030 IPR020816 Histone-like DNA-binding protein, conserved site BER93_RS06030 IPR000119 Histone-like DNA-binding protein BER93_RS06035 IPR009061 Putative DNA-binding domain superfamily BER93_RS06035 IPR000551 MerR-type HTH domain BER93_RS06055 IPR003362 Bacterial sugar transferase BER93_RS06055 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase BER93_RS06055 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ BER93_RS06075 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain BER93_RS06075 IPR001296 Glycosyl transferase, family 1 BER93_RS06085 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain BER93_RS06095 IPR007345 Polysaccharide pyruvyl transferase BER93_RS06100 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase BER93_RS06100 IPR004629 Glycosyl transferase WecB/TagA/CpsF BER93_RS06110 IPR020826 Transketolase binding site BER93_RS06110 IPR033248 Transketolase, C-terminal domain BER93_RS06110 IPR005475 Transketolase-like, pyrimidine-binding domain BER93_RS06110 IPR005477 Deoxyxylulose-5-phosphate synthase BER93_RS06110 IPR005474 Transketolase, N-terminal BER93_RS06110 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II BER93_RS06110 IPR029061 Thiamin diphosphate-binding fold BER93_RS06125 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_RS06125 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain BER93_RS06125 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal BER93_RS06125 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_RS06125 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain BER93_RS06125 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily BER93_RS06125 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily BER93_RS06135 IPR012674 Calycin BER93_RS06135 IPR022271 Lipocalin, ApoD type BER93_RS06135 IPR002446 Lipocalin, bacterial BER93_RS06135 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BER93_RS06135 IPR022272 Lipocalin family conserved site BER93_RS06155 IPR035901 GIY-YIG endonuclease superfamily BER93_RS06155 IPR000305 GIY-YIG endonuclease BER93_RS06170 IPR010940 Magnesium-protoporphyrin IX methyltransferase, C-terminal BER93_RS06170 IPR010251 Magnesium-protoporphyrin IX methyltransferase BER93_RS06170 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS06170 IPR007848 Methyltransferase small domain BER93_RS06185 IPR002514 Transposase IS3/IS911family BER93_RS06185 IPR009057 Homeobox-like domain superfamily BER93_RS06190 IPR007457 Fe(II) trafficking protein YggX BER93_RS06190 IPR036766 Fe(II) trafficking protein YggX superfamily BER93_RS06195 IPR004035 Endonuclease III, iron-sulphur binding site BER93_RS06195 IPR004036 Endonuclease III-like, conserved site-2 BER93_RS06195 IPR000445 Helix-hairpin-helix motif BER93_RS06195 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal BER93_RS06195 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif BER93_RS06195 IPR005760 A/G-specific adenine glycosylase MutY BER93_RS06195 IPR003265 HhH-GPD domain BER93_RS06195 IPR029119 MutY, C-terminal BER93_RS06195 IPR015797 NUDIX hydrolase-like domain superfamily BER93_RS06195 IPR011257 DNA glycosylase BER93_RS06200 IPR004390 Signal-recognition particle receptor FtsY BER93_RS06200 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain BER93_RS06200 IPR013822 Signal recognition particle SRP54, helical bundle BER93_RS06200 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily BER93_RS06200 IPR003593 AAA+ ATPase domain BER93_RS06200 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS06200 IPR036225 SRP/SRP receptor, N-terminal BER93_RS06210 IPR008794 Proline racemase family BER93_RS06215 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS06215 IPR012727 Glycine oxidase ThiO BER93_RS06215 IPR006076 FAD dependent oxidoreductase BER93_RS06225 IPR023753 FAD/NAD(P)-binding domain BER93_RS06225 IPR007419 BFD-like [2Fe-2S]-binding domain BER93_RS06225 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS06225 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily BER93_RS06225 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B BER93_RS06230 IPR002220 DapA-like BER93_RS06230 IPR013785 Aldolase-type TIM barrel BER93_RS06230 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA BER93_RS06230 IPR020624 Schiff base-forming aldolase, conserved site BER93_RS06230 IPR020625 Schiff base-forming aldolase, active site BER93_RS06235 IPR015590 Aldehyde dehydrogenase domain BER93_RS06235 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_RS06235 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_RS06235 IPR016161 Aldehyde/histidinol dehydrogenase BER93_RS06240 IPR001714 Peptidase M24, methionine aminopeptidase BER93_RS06240 IPR000587 Creatinase, N-terminal BER93_RS06240 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BER93_RS06240 IPR000994 Peptidase M24 BER93_RS06240 IPR036005 Creatinase/aminopeptidase-like BER93_RS06240 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BER93_RS06255 IPR002293 Amino acid/polyamine transporter I BER93_RS06280 IPR008490 Transposase InsH, N-terminal BER93_RS06280 IPR002559 Transposase, IS4-like BER93_RS06290 IPR030400 Sedolisin domain BER93_RS06290 IPR036852 Peptidase S8/S53 domain superfamily BER93_RS06290 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_RS06290 IPR015366 Peptidase S53, activation domain BER93_RS06290 IPR000209 Peptidase S8/S53 domain BER93_RS06300 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS06300 IPR010101 TonB-dependent vitamin B12 transporter BtuB BER93_RS06300 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS06300 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS06300 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS06300 IPR012910 TonB-dependent receptor, plug domain BER93_RS06300 IPR010917 TonB-dependent receptor, conserved site BER93_RS06300 IPR010916 TonB box, conserved site BER93_RS06320 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS06320 IPR010101 TonB-dependent vitamin B12 transporter BtuB BER93_RS06320 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS06320 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS06320 IPR010917 TonB-dependent receptor, conserved site BER93_RS06320 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS06320 IPR010916 TonB box, conserved site BER93_RS06320 IPR012910 TonB-dependent receptor, plug domain BER93_RS06340 IPR012337 Ribonuclease H-like superfamily BER93_RS06340 IPR001584 Integrase, catalytic core BER93_RS06340 IPR036397 Ribonuclease H superfamily BER93_RS06340 IPR025948 HTH-like domain BER93_RS06345 IPR009057 Homeobox-like domain superfamily BER93_RS06345 IPR002514 Transposase IS3/IS911family BER93_RS06350 IPR008490 Transposase InsH, N-terminal BER93_RS06360 IPR005265 Protoporphyrinogen oxidase HemJ-like BER93_RS06365 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal BER93_RS06365 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS06365 IPR001095 Acetyl-CoA carboxylase, alpha subunit BER93_RS06370 IPR040982 DNA polymerase III alpha subunit finger domain BER93_RS06370 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain BER93_RS06370 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type BER93_RS06370 IPR004013 PHP domain BER93_RS06370 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain BER93_RS06370 IPR004805 DNA polymerase III, alpha subunit BER93_RS06370 IPR012340 Nucleic acid-binding, OB-fold BER93_RS06370 IPR029460 DNA polymerase, helix-hairpin-helix motif BER93_RS06370 IPR003141 Polymerase/histidinol phosphatase, N-terminal BER93_RS06370 IPR016195 Polymerase/histidinol phosphatase-like BER93_RS06375 IPR022898 Ribonuclease HII BER93_RS06375 IPR036397 Ribonuclease H superfamily BER93_RS06375 IPR012337 Ribonuclease H-like superfamily BER93_RS06375 IPR001352 Ribonuclease HII/HIII BER93_RS06375 IPR024567 Ribonuclease HII/HIII domain BER93_RS06380 IPR003835 Glycosyl transferase, family 19 BER93_RS06385 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase BER93_RS06385 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal BER93_RS06385 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily BER93_RS06385 IPR001451 Hexapeptide repeat BER93_RS06385 IPR011004 Trimeric LpxA-like superfamily BER93_RS06390 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ BER93_RS06390 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ BER93_RS06390 IPR029069 HotDog domain superfamily BER93_RS06395 IPR001451 Hexapeptide repeat BER93_RS06395 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region BER93_RS06395 IPR011004 Trimeric LpxA-like superfamily BER93_RS06395 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD BER93_RS06405 IPR023707 Outer membrane protein assembly factor BamA BER93_RS06405 IPR039910 Surface antigen D15-like BER93_RS06405 IPR010827 POTRA domain, BamA/TamA-like BER93_RS06405 IPR000184 Bacterial surface antigen (D15) BER93_RS06405 IPR034746 POTRA domain BER93_RS06410 IPR001478 PDZ domain BER93_RS06410 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase BER93_RS06410 IPR008915 Peptidase M50 BER93_RS06410 IPR041489 PDZ domain 6 BER93_RS06410 IPR036034 PDZ superfamily BER93_RS06415 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal BER93_RS06415 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal BER93_RS06415 IPR026877 DXP reductoisomerase C-terminal domain BER93_RS06415 IPR036169 DXP reductoisomerase, C-terminal domain superfamily BER93_RS06415 IPR036291 NAD(P)-binding domain superfamily BER93_RS06415 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase BER93_RS06420 IPR000374 Phosphatidate cytidylyltransferase BER93_RS06425 IPR001441 Decaprenyl diphosphate synthase-like BER93_RS06425 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site BER93_RS06425 IPR036424 Decaprenyl diphosphate synthase-like superfamily BER93_RS06430 IPR023584 Ribosome recycling factor domain BER93_RS06430 IPR002661 Ribosome recycling factor BER93_RS06430 IPR036191 RRF superfamily BER93_RS06435 IPR015963 Uridylate kinase, bacteria BER93_RS06435 IPR011817 Uridylate kinase BER93_RS06435 IPR001048 Aspartate/glutamate/uridylate kinase BER93_RS06435 IPR036393 Acetylglutamate kinase-like superfamily BER93_RS06445 IPR009060 UBA-like superfamily BER93_RS06445 IPR001816 Translation elongation factor EFTs/EF1B BER93_RS06445 IPR018101 Translation elongation factor Ts, conserved site BER93_RS06445 IPR036402 Elongation factor Ts, dimerisation domain superfamily BER93_RS06445 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation BER93_RS06450 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid BER93_RS06450 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily BER93_RS06450 IPR001865 Ribosomal protein S2 BER93_RS06450 IPR018130 Ribosomal protein S2, conserved site BER93_RS06485 IPR036005 Creatinase/aminopeptidase-like BER93_RS06485 IPR000994 Peptidase M24 BER93_RS06485 IPR001714 Peptidase M24, methionine aminopeptidase BER93_RS06485 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 BER93_RS06490 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme BER93_RS06490 IPR002934 Polymerase, nucleotidyl transferase domain BER93_RS06490 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase BER93_RS06490 IPR002912 ACT domain BER93_RS06490 IPR003607 HD/PDEase domain BER93_RS06490 IPR006674 HD domain BER93_RS06495 IPR011004 Trimeric LpxA-like superfamily BER93_RS06495 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 BER93_RS06495 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family BER93_RS06495 IPR001451 Hexapeptide repeat BER93_RS06495 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily BER93_RS06500 IPR036249 Thioredoxin-like superfamily BER93_RS06500 IPR006660 Arsenate reductase-like BER93_RS06500 IPR006504 Transcriptional regulator Spx/MgsR BER93_RS06505 IPR036264 Bacterial exopeptidase dimerisation domain BER93_RS06505 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site BER93_RS06505 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria BER93_RS06505 IPR002933 Peptidase M20 BER93_RS06505 IPR011650 Peptidase M20, dimerisation domain BER93_RS06510 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_RS06510 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS06510 IPR017932 Glutamine amidotransferase type 2 domain BER93_RS06510 IPR033738 Asparagine synthase, N-terminal domain BER93_RS06510 IPR001962 Asparagine synthase BER93_RS06510 IPR006426 Asparagine synthase, glutamine-hydrolyzing BER93_RS06520 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS06520 IPR012910 TonB-dependent receptor, plug domain BER93_RS06520 IPR030148 Catecholate siderophore receptor Fiu BER93_RS06520 IPR039423 TonB-dependent receptor-like BER93_RS06520 IPR010105 TonB-dependent siderophore receptor BER93_RS06520 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS06520 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS06525 IPR023343 Penicillin amidase type, domain 1 BER93_RS06525 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase BER93_RS06525 IPR014395 Penicillin/GL-7-ACA/AHL acylase BER93_RS06525 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_RS06535 IPR009078 Ferritin-like superfamily BER93_RS06535 IPR009040 Ferritin-like diiron domain BER93_RS06535 IPR012347 Ferritin-like BER93_RS06535 IPR008331 Ferritin/DPS protein domain BER93_RS06535 IPR002024 Bacterioferritin BER93_RS06540 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS06540 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification BER93_RS06540 IPR025835 Thiopurine S-methyltransferase BER93_RS06540 IPR008854 TPMT family BER93_RS06545 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative BER93_RS06545 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily BER93_RS06545 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta BER93_RS06545 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal BER93_RS06545 IPR013760 DNA topoisomerase, type IIA-like domain superfamily BER93_RS06545 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat BER93_RS06545 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BER93_RS06555 IPR010131 RND efflux system, outer membrane lipoprotein, NodT BER93_RS06555 IPR003423 Outer membrane efflux protein BER93_RS06560 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BER93_RS06560 IPR005694 Efflux pump membrane protein BER93_RS06565 IPR004638 Drug resistance transporter EmrB-like BER93_RS06565 IPR036259 MFS transporter superfamily BER93_RS06565 IPR020846 Major facilitator superfamily domain BER93_RS06565 IPR011701 Major facilitator superfamily BER93_RS06580 IPR005279 Dipeptide/tripeptide permease BER93_RS06580 IPR020846 Major facilitator superfamily domain BER93_RS06580 IPR036259 MFS transporter superfamily BER93_RS06580 IPR000109 Proton-dependent oligopeptide transporter family BER93_RS06580 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site BER93_RS06615 IPR029760 Glutathione peroxidase conserved site BER93_RS06615 IPR029759 Glutathione peroxidase active site BER93_RS06615 IPR000889 Glutathione peroxidase BER93_RS06615 IPR036249 Thioredoxin-like superfamily BER93_RS06625 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase BER93_RS06625 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain BER93_RS06625 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BER93_RS06625 IPR017927 FAD-binding domain, ferredoxin reductase-type BER93_RS06625 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_RS06625 IPR033892 Ferredoxin--NADP reductase, bacteria BER93_RS06625 IPR017938 Riboflavin synthase-like beta-barrel BER93_RS06630 IPR003439 ABC transporter-like BER93_RS06630 IPR017871 ABC transporter, conserved site BER93_RS06630 IPR003593 AAA+ ATPase domain BER93_RS06630 IPR039421 Type I protein exporter BER93_RS06630 IPR011527 ABC transporter type 1, transmembrane domain BER93_RS06630 IPR036640 ABC transporter type 1, transmembrane domain superfamily BER93_RS06630 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS06635 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily BER93_RS06635 IPR011167 Iron-dependent fumarate hydratase BER93_RS06635 IPR020557 Fumarate lyase, conserved site BER93_RS06635 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain BER93_RS06635 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain BER93_RS06640 IPR036874 Carbonic anhydrase superfamily BER93_RS06640 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site BER93_RS06640 IPR001765 Carbonic anhydrase BER93_RS06660 IPR019844 Cold-shock (CSD) domain BER93_RS06660 IPR002059 Cold-shock protein, DNA-binding BER93_RS06660 IPR011129 Cold shock domain BER93_RS06660 IPR012156 Cold shock, CspA BER93_RS06660 IPR012340 Nucleic acid-binding, OB-fold BER93_RS06675 IPR035985 Ubiquitin-activating enzyme BER93_RS06675 IPR000594 THIF-type NAD/FAD binding fold BER93_RS06680 IPR018228 Deoxyribonuclease, TatD-related, conserved site BER93_RS06680 IPR015991 Uncharacterised hydrolase TatD-type BER93_RS06680 IPR032466 Metal-dependent hydrolase BER93_RS06680 IPR001130 TatD family BER93_RS06700 IPR010987 Glutathione S-transferase, C-terminal-like BER93_RS06700 IPR036249 Thioredoxin-like superfamily BER93_RS06700 IPR004046 Glutathione S-transferase, C-terminal BER93_RS06700 IPR004045 Glutathione S-transferase, N-terminal BER93_RS06700 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BER93_RS06705 IPR017932 Glutamine amidotransferase type 2 domain BER93_RS06705 IPR033738 Asparagine synthase, N-terminal domain BER93_RS06705 IPR006426 Asparagine synthase, glutamine-hydrolyzing BER93_RS06705 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_RS06705 IPR001962 Asparagine synthase BER93_RS06710 IPR029039 Flavoprotein-like superfamily BER93_RS06710 IPR005025 NADPH-dependent FMN reductase-like BER93_RS06715 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BER93_RS06715 IPR007693 DNA helicase, DnaB-like, N-terminal BER93_RS06715 IPR007694 DNA helicase, DnaB-like, C-terminal BER93_RS06715 IPR003593 AAA+ ATPase domain BER93_RS06715 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily BER93_RS06715 IPR007692 DNA helicase, DnaB type BER93_RS06715 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS06720 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain BER93_RS06720 IPR006050 DNA photolyase, N-terminal BER93_RS06720 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily BER93_RS06720 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal BER93_RS06720 IPR002081 Cryptochrome/DNA photolyase class 1 BER93_RS06720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS06720 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily BER93_RS06725 IPR008722 Outer membrane porin F, N-terminal BER93_RS06725 IPR028974 TSP type-3 repeat BER93_RS06725 IPR036737 OmpA-like domain superfamily BER93_RS06725 IPR006690 Outer membrane protein, OmpA-like, conserved site BER93_RS06725 IPR006665 OmpA-like domain BER93_RS06725 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BER93_RS06725 IPR006664 Outer membrane protein, bacterial BER93_RS06735 IPR025948 HTH-like domain BER93_RS06735 IPR012337 Ribonuclease H-like superfamily BER93_RS06735 IPR036397 Ribonuclease H superfamily BER93_RS06735 IPR001584 Integrase, catalytic core BER93_RS06740 IPR002514 Transposase IS3/IS911family BER93_RS06740 IPR009057 Homeobox-like domain superfamily BER93_RS06760 IPR010359 IrrE N-terminal-like domain BER93_RS06760 IPR018653 Domain of unknown function DUF2083,transcriptional regulator BER93_RS06760 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS06760 IPR026281 HTH-type transcriptional regulator RamB BER93_RS06760 IPR001387 Cro/C1-type helix-turn-helix domain BER93_RS06765 IPR016160 Aldehyde dehydrogenase, cysteine active site BER93_RS06765 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_RS06765 IPR016161 Aldehyde/histidinol dehydrogenase BER93_RS06765 IPR015590 Aldehyde dehydrogenase domain BER93_RS06765 IPR010061 Methylmalonate-semialdehyde dehydrogenase BER93_RS06765 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_RS06770 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily BER93_RS06770 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal BER93_RS06770 IPR006089 Acyl-CoA dehydrogenase, conserved site BER93_RS06770 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_RS06770 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_RS06770 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain BER93_RS06770 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily BER93_RS06775 IPR014748 Enoyl-CoA hydratase, C-terminal BER93_RS06775 IPR001753 Enoyl-CoA hydratase/isomerase BER93_RS06775 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site BER93_RS06775 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS06780 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding BER93_RS06780 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site BER93_RS06780 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal BER93_RS06780 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS06780 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS06780 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site BER93_RS06780 IPR001753 Enoyl-CoA hydratase/isomerase BER93_RS06780 IPR036291 NAD(P)-binding domain superfamily BER93_RS06780 IPR012802 Fatty oxidation complex, alpha subunit FadJ BER93_RS06785 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding BER93_RS06785 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site BER93_RS06785 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS06785 IPR013328 6-phosphogluconate dehydrogenase, domain 2 BER93_RS06785 IPR015815 3-hydroxyisobutyrate dehydrogenase-related BER93_RS06785 IPR036291 NAD(P)-binding domain superfamily BER93_RS06785 IPR011548 3-hydroxyisobutyrate dehydrogenase BER93_RS06785 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain BER93_RS06790 IPR002524 Cation efflux protein BER93_RS06790 IPR036837 Cation efflux protein, cytoplasmic domain superfamily BER93_RS06790 IPR027469 Cation efflux transmembrane domain superfamily BER93_RS06795 IPR036291 NAD(P)-binding domain superfamily BER93_RS06795 IPR012802 Fatty oxidation complex, alpha subunit FadJ BER93_RS06795 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS06795 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS06795 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal BER93_RS06795 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding BER93_RS06795 IPR001753 Enoyl-CoA hydratase/isomerase BER93_RS06800 IPR013324 RNA polymerase sigma factor, region 3/4-like BER93_RS06800 IPR014286 RNA polymerase sigma-70 RpoE type BER93_RS06800 IPR039425 RNA polymerase sigma-70 like BER93_RS06800 IPR014284 RNA polymerase sigma-70 like domain BER93_RS06800 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site BER93_RS06800 IPR007627 RNA polymerase sigma-70 region 2 BER93_RS06800 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 BER93_RS06800 IPR013325 RNA polymerase sigma factor, region 2 BER93_RS06800 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS06810 IPR001940 Peptidase S1C BER93_RS06810 IPR009003 Peptidase S1, PA clan BER93_RS06810 IPR011782 Peptidase S1C, Do BER93_RS06810 IPR036034 PDZ superfamily BER93_RS06810 IPR001478 PDZ domain BER93_RS06815 IPR008490 Transposase InsH, N-terminal BER93_RS06820 IPR008490 Transposase InsH, N-terminal BER93_RS06820 IPR002559 Transposase, IS4-like BER93_RS06830 IPR002514 Transposase IS3/IS911family BER93_RS06830 IPR009057 Homeobox-like domain superfamily BER93_RS06835 IPR012337 Ribonuclease H-like superfamily BER93_RS06835 IPR036397 Ribonuclease H superfamily BER93_RS06835 IPR025948 HTH-like domain BER93_RS06835 IPR001584 Integrase, catalytic core BER93_RS06855 IPR036318 FAD-binding, type PCMH-like superfamily BER93_RS06855 IPR016169 FAD-binding, type PCMH, subdomain 2 BER93_RS06855 IPR000644 CBS domain BER93_RS06855 IPR005170 Transporter-associated domain BER93_RS06865 IPR020549 Endoribonuclease YbeY, conserved site BER93_RS06865 IPR002036 Endoribonuclease YbeY BER93_RS06865 IPR023091 Metalloprotease catalytic domain superfamily, predicted BER93_RS06870 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS06870 IPR003714 PhoH-like protein BER93_RS06875 IPR002792 TRAM domain BER93_RS06875 IPR023404 Radical SAM, alpha/beta horseshoe BER93_RS06875 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB BER93_RS06875 IPR038135 Methylthiotransferase, N-terminal domain superfamily BER93_RS06875 IPR007197 Radical SAM BER93_RS06875 IPR020612 Methylthiotransferase, conserved site BER93_RS06875 IPR013848 Methylthiotransferase, N-terminal BER93_RS06875 IPR006638 Elp3/MiaB/NifB BER93_RS06875 IPR005839 Methylthiotransferase BER93_RS06885 IPR000189 Prokaryotic transglycosylase, active site BER93_RS06885 IPR023346 Lysozyme-like domain superfamily BER93_RS06885 IPR008258 Transglycosylase SLT domain 1 BER93_RS06890 IPR005805 Rieske iron-sulphur protein, C-terminal BER93_RS06890 IPR017941 Rieske [2Fe-2S] iron-sulphur domain BER93_RS06890 IPR014349 Rieske iron-sulphur protein BER93_RS06890 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal BER93_RS06890 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit BER93_RS06890 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily BER93_RS06895 IPR005798 Cytochrome b/b6, C-terminal BER93_RS06895 IPR036150 Cytochrome b/b6, C-terminal domain superfamily BER93_RS06895 IPR005797 Cytochrome b/b6, N-terminal BER93_RS06895 IPR027387 Cytochrome b/b6-like domain superfamily BER93_RS06895 IPR016174 Di-haem cytochrome, transmembrane BER93_RS06895 IPR030689 Cytochrome b BER93_RS06900 IPR009056 Cytochrome c-like domain BER93_RS06900 IPR002326 Cytochrome c1 BER93_RS06900 IPR036909 Cytochrome c-like domain superfamily BER93_RS06905 IPR010987 Glutathione S-transferase, C-terminal-like BER93_RS06905 IPR004046 Glutathione S-transferase, C-terminal BER93_RS06905 IPR040079 Glutathione Transferase family BER93_RS06905 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BER93_RS06905 IPR034341 Stringent starvation protein A, N-terminal BER93_RS06905 IPR036249 Thioredoxin-like superfamily BER93_RS06905 IPR004045 Glutathione S-transferase, N-terminal BER93_RS06910 IPR036760 SspB-like superfamily BER93_RS06910 IPR007481 Stringent starvation protein B BER93_RS06920 IPR001650 Helicase, C-terminal BER93_RS06920 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS06920 IPR003593 AAA+ ATPase domain BER93_RS06920 IPR013701 DEAD/H associated BER93_RS06920 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS06920 IPR011545 DEAD/DEAH box helicase domain BER93_RS06925 IPR011034 Formyl transferase-like, C-terminal domain superfamily BER93_RS06925 IPR003180 Methylpurine-DNA glycosylase BER93_RS06925 IPR036995 Methylpurine-DNA glycosylase superfamily BER93_RS06955 IPR012337 Ribonuclease H-like superfamily BER93_RS06955 IPR002121 HRDC domain BER93_RS06955 IPR010997 HRDC-like superfamily BER93_RS06955 IPR002562 3'-5' exonuclease domain BER93_RS06955 IPR006292 Ribonuclease D BER93_RS06955 IPR036397 Ribonuclease H superfamily BER93_RS06960 IPR005532 Sulfatase-modifying factor enzyme BER93_RS06960 IPR042095 Sulfatase-modifying factor enzyme superfamily BER93_RS06960 IPR016187 C-type lectin fold BER93_RS06975 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS06975 IPR035654 Elongation factor 4, domain IV BER93_RS06975 IPR000640 Elongation factor EFG, domain V-like BER93_RS06975 IPR035647 EF-G domain III/V-like BER93_RS06975 IPR005225 Small GTP-binding protein domain BER93_RS06975 IPR000795 Transcription factor, GTP-binding domain BER93_RS06975 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS06975 IPR006297 Elongation factor 4 BER93_RS06975 IPR038363 LepA, C-terminal domain superfamily BER93_RS06975 IPR031157 Tr-type G domain, conserved site BER93_RS06975 IPR004161 Translation elongation factor EFTu-like, domain 2 BER93_RS06975 IPR013842 GTP-binding protein LepA, C-terminal BER93_RS06980 IPR019758 Peptidase S26A, signal peptidase I, conserved site BER93_RS06980 IPR019757 Peptidase S26A, signal peptidase I, lysine active site BER93_RS06980 IPR019533 Peptidase S26 BER93_RS06980 IPR019756 Peptidase S26A, signal peptidase I, serine active site BER93_RS06980 IPR036286 LexA/Signal peptidase-like superfamily BER93_RS06980 IPR000223 Peptidase S26A, signal peptidase I BER93_RS06990 IPR014720 Double-stranded RNA-binding domain BER93_RS06990 IPR011907 Ribonuclease III BER93_RS06990 IPR000999 Ribonuclease III domain BER93_RS06990 IPR036389 Ribonuclease III, endonuclease domain superfamily BER93_RS06995 IPR005662 GTP-binding protein Era BER93_RS06995 IPR030388 Era-type guanine nucleotide-binding (G) domain BER93_RS06995 IPR015946 K homology domain-like, alpha/beta BER93_RS06995 IPR004044 K Homology domain, type 2 BER93_RS06995 IPR009019 K homology domain superfamily, prokaryotic type BER93_RS06995 IPR006073 GTP binding domain BER93_RS06995 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS06995 IPR005225 Small GTP-binding protein domain BER93_RS07000 IPR003717 Recombination protein O, RecO BER93_RS07000 IPR012340 Nucleic acid-binding, OB-fold BER93_RS07000 IPR022572 DNA replication/recombination mediator RecO, N-terminal BER93_RS07000 IPR037278 ARFGAP/RecO-like zinc finger BER93_RS07010 IPR010280 (Uracil-5)-methyltransferase family BER93_RS07010 IPR002792 TRAM domain BER93_RS07010 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS07010 IPR030390 RNA methyltransferase TrmA, active site BER93_RS07010 IPR012340 Nucleic acid-binding, OB-fold BER93_RS07010 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD BER93_RS07010 IPR030391 RNA methyltransferase TrmA, conserved site BER93_RS07015 IPR033469 CYTH-like domain superfamily BER93_RS07015 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like BER93_RS07015 IPR023577 CYTH domain BER93_RS07020 IPR034721 Bacterial renalase BER93_RS07020 IPR002937 Amine oxidase BER93_RS07020 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS07025 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS07025 IPR007357 Deoxyribodipyrimidine photolyase-related protein BER93_RS07025 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily BER93_RS07030 IPR017853 Glycoside hydrolase superfamily BER93_RS07030 IPR001764 Glycoside hydrolase, family 3, N-terminal BER93_RS07030 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily BER93_RS07030 IPR019800 Glycoside hydrolase, family 3, active site BER93_RS07030 IPR022956 Beta-hexosaminidase, bacterial BER93_RS07035 IPR029057 Phosphoribosyltransferase-like BER93_RS07035 IPR005904 Hypoxanthine phosphoribosyl transferase BER93_RS07035 IPR000836 Phosphoribosyltransferase domain BER93_RS07040 IPR010044 Methylthioadenosine phosphorylase (MTAP) BER93_RS07040 IPR018099 Purine phosphorylase, family 2, conserved site BER93_RS07040 IPR035994 Nucleoside phosphorylase superfamily BER93_RS07040 IPR000845 Nucleoside phosphorylase domain BER93_RS07045 IPR012340 Nucleic acid-binding, OB-fold BER93_RS07045 IPR002059 Cold-shock protein, DNA-binding BER93_RS07045 IPR019844 Cold-shock (CSD) domain BER93_RS07045 IPR012156 Cold shock, CspA BER93_RS07045 IPR011129 Cold shock domain BER93_RS07055 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07055 IPR001650 Helicase, C-terminal BER93_RS07055 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS07055 IPR011545 DEAD/DEAH box helicase domain BER93_RS07055 IPR013701 DEAD/H associated BER93_RS07055 IPR003593 AAA+ ATPase domain BER93_RS07060 IPR012310 DNA ligase, ATP-dependent, central BER93_RS07060 IPR000977 DNA ligase, ATP-dependent BER93_RS07060 IPR012309 DNA ligase, ATP-dependent, C-terminal BER93_RS07060 IPR016059 DNA ligase, ATP-dependent, conserved site BER93_RS07060 IPR012308 DNA ligase, ATP-dependent, N-terminal BER93_RS07060 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily BER93_RS07060 IPR012340 Nucleic acid-binding, OB-fold BER93_RS07060 IPR022865 DNA ligase, ATP-dependent, bacterial/archaeal BER93_RS07070 IPR000977 DNA ligase, ATP-dependent BER93_RS07070 IPR012310 DNA ligase, ATP-dependent, central BER93_RS07070 IPR016059 DNA ligase, ATP-dependent, conserved site BER93_RS07070 IPR012308 DNA ligase, ATP-dependent, N-terminal BER93_RS07070 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily BER93_RS07070 IPR012340 Nucleic acid-binding, OB-fold BER93_RS07070 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BER93_RS07070 IPR012309 DNA ligase, ATP-dependent, C-terminal BER93_RS07100 IPR020617 Thiolase, C-terminal BER93_RS07100 IPR020610 Thiolase, active site BER93_RS07100 IPR020615 Thiolase, acyl-enzyme intermediate active site BER93_RS07100 IPR020616 Thiolase, N-terminal BER93_RS07100 IPR016039 Thiolase-like BER93_RS07100 IPR002155 Thiolase BER93_RS07100 IPR020613 Thiolase, conserved site BER93_RS07105 IPR002559 Transposase, IS4-like BER93_RS07105 IPR008490 Transposase InsH, N-terminal BER93_RS07110 IPR033524 Leu/Phe/Val dehydrogenases active site BER93_RS07110 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase BER93_RS07110 IPR036291 NAD(P)-binding domain superfamily BER93_RS07110 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal BER93_RS07110 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain BER93_RS07110 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal BER93_RS07120 IPR002725 Protein of unknown function DUF45 BER93_RS07130 IPR009760 Protein of unknown function DUF1328 BER93_RS07140 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07140 IPR033186 Helicase HerA-like C-terminal BER93_RS07150 IPR036779 LysM domain superfamily BER93_RS07150 IPR018392 LysM domain BER93_RS07150 IPR038440 FimV, C-terminal domain superfamily BER93_RS07150 IPR020011 Motility protein FimV, C-terminal BER93_RS07150 IPR038440 FimV, C-terminal domain superfamily BER93_RS07150 IPR018392 LysM domain BER93_RS07150 IPR036779 LysM domain superfamily BER93_RS07150 IPR020012 Motility protein FimV, N-terminal BER93_RS07150 IPR020011 Motility protein FimV, C-terminal BER93_RS07150 IPR011990 Tetratricopeptide-like helical domain superfamily BER93_RS07150 IPR011990 Tetratricopeptide-like helical domain superfamily BER93_RS07150 IPR020012 Motility protein FimV, N-terminal BER93_RS07160 IPR020095 Pseudouridine synthase I, TruA, C-terminal BER93_RS07160 IPR001406 Pseudouridine synthase I, TruA BER93_RS07160 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS07160 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain BER93_RS07165 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) BER93_RS07165 IPR013785 Aldolase-type TIM barrel BER93_RS07165 IPR011060 Ribulose-phosphate binding barrel BER93_RS07180 IPR002559 Transposase, IS4-like BER93_RS07180 IPR008490 Transposase InsH, N-terminal BER93_RS07190 IPR037418 HTH-type transcriptional regulator TrpI, PBP2 BER93_RS07190 IPR000847 Transcription regulator HTH, LysR BER93_RS07190 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS07190 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS07190 IPR005119 LysR, substrate-binding BER93_RS07195 IPR023026 Tryptophan synthase beta chain/beta chain-like BER93_RS07195 IPR006654 Tryptophan synthase, beta chain BER93_RS07195 IPR006653 Tryptophan synthase, beta chain, conserved site BER93_RS07195 IPR001926 Pyridoxal-phosphate dependent enzyme BER93_RS07195 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_RS07200 IPR002028 Tryptophan synthase, alpha chain BER93_RS07200 IPR018204 Tryptophan synthase, alpha chain, active site BER93_RS07200 IPR011060 Ribulose-phosphate binding barrel BER93_RS07200 IPR013785 Aldolase-type TIM barrel BER93_RS07205 IPR041010 Acetyl-coA carboxylase zinc finger domain BER93_RS07205 IPR034733 Acetyl-CoA carboxylase BER93_RS07205 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit BER93_RS07205 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS07205 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal BER93_RS07210 IPR016066 Alpha-D-phosphohexomutase, conserved site BER93_RS07210 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I BER93_RS07210 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III BER93_RS07210 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II BER93_RS07210 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III BER93_RS07210 IPR005843 Alpha-D-phosphohexomutase, C-terminal BER93_RS07210 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily BER93_RS07210 IPR006352 Phosphoglucosamine mutase, bacterial type BER93_RS07210 IPR005841 Alpha-D-phosphohexomutase superfamily BER93_RS07225 IPR000160 GGDEF domain BER93_RS07225 IPR029787 Nucleotide cyclase BER93_RS07225 IPR005330 MHYT domain BER93_RS07225 IPR035919 EAL domain superfamily BER93_RS07225 IPR001633 EAL domain BER93_RS07240 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS07240 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS07240 IPR036291 NAD(P)-binding domain superfamily BER93_RS07245 IPR035990 Triosephosphate isomerase superfamily BER93_RS07245 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic BER93_RS07245 IPR000652 Triosephosphate isomerase BER93_RS07245 IPR013785 Aldolase-type TIM barrel BER93_RS07245 IPR020861 Triosephosphate isomerase, active site BER93_RS07260 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily BER93_RS07260 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid BER93_RS07260 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 BER93_RS07265 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit BER93_RS07265 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit BER93_RS07270 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site BER93_RS07270 IPR010218 NADH dehydrogenase, subunit C BER93_RS07270 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit BER93_RS07270 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily BER93_RS07275 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H BER93_RS07275 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily BER93_RS07275 IPR001135 NADH-quinone oxidoreductase, subunit D BER93_RS07275 IPR029014 [NiFe]-hydrogenase, large subunit BER93_RS07275 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site BER93_RS07280 IPR002023 NADH-quinone oxidoreductase subunit E-like BER93_RS07280 IPR036249 Thioredoxin-like superfamily BER93_RS07280 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal BER93_RS07280 IPR042128 NuoE domain BER93_RS07285 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site BER93_RS07285 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain BER93_RS07285 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily BER93_RS07285 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily BER93_RS07285 IPR019554 Soluble ligand binding domain BER93_RS07285 IPR011537 NADH ubiquinone oxidoreductase, F subunit BER93_RS07285 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain BER93_RS07290 IPR036010 2Fe-2S ferredoxin-like superfamily BER93_RS07290 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site BER93_RS07290 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal BER93_RS07290 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding BER93_RS07290 IPR010228 NADH:ubiquinone oxidoreductase, subunit G BER93_RS07290 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain BER93_RS07290 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain BER93_RS07290 IPR006656 Molybdopterin oxidoreductase BER93_RS07295 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site BER93_RS07295 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H BER93_RS07300 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_RS07300 IPR010226 NADH-quinone oxidoreductase, chain I BER93_RS07300 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_RS07305 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ BER93_RS07305 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 BER93_RS07310 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like BER93_RS07310 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K BER93_RS07315 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit BER93_RS07315 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal BER93_RS07315 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 BER93_RS07315 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup BER93_RS07320 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal BER93_RS07320 IPR010227 NADH-quinone oxidoreductase, chain M/4 BER93_RS07320 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit BER93_RS07320 IPR003918 NADH:ubiquinone oxidoreductase BER93_RS07325 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 BER93_RS07325 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit BER93_RS07335 IPR003728 Ribosome maturation factor RimP BER93_RS07335 IPR035956 RimP, N-terminal domain superfamily BER93_RS07335 IPR028989 Ribosome maturation factor RimP, N-terminal BER93_RS07335 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily BER93_RS07335 IPR028998 Ribosome maturation factor RimP, C-terminal BER93_RS07340 IPR012340 Nucleic acid-binding, OB-fold BER93_RS07340 IPR009019 K homology domain superfamily, prokaryotic type BER93_RS07340 IPR025249 KH domain, NusA-like BER93_RS07340 IPR022967 RNA-binding domain, S1 BER93_RS07340 IPR010213 Transcription termination factor NusA BER93_RS07340 IPR036555 NusA, N-terminal domain superfamily BER93_RS07340 IPR030842 Transcription termination/antitermination protein NusA, bacterial BER93_RS07340 IPR003029 S1 domain BER93_RS07340 IPR013735 Transcription factor NusA, N-terminal BER93_RS07340 IPR015946 K homology domain-like, alpha/beta BER93_RS07340 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical BER93_RS07340 IPR010214 Transcription termination factor NusA, C-terminal duplication BER93_RS07345 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS07345 IPR036925 Translation initiation factor IF-2, domain 3 superfamily BER93_RS07345 IPR015760 Translation initiation factor IF- 2 BER93_RS07345 IPR023115 Translation initiation factor IF- 2, domain 3 BER93_RS07345 IPR000795 Transcription factor, GTP-binding domain BER93_RS07345 IPR005225 Small GTP-binding protein domain BER93_RS07345 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07345 IPR006847 Translation initiation factor IF-2, N-terminal BER93_RS07345 IPR013575 Initiation factor 2 associated domain, bacterial BER93_RS07345 IPR009061 Putative DNA-binding domain superfamily BER93_RS07345 IPR000178 Translation initiation factor aIF-2, bacterial-like BER93_RS07350 IPR000238 Ribosome-binding factor A BER93_RS07350 IPR023799 Ribosome-binding factor A domain superfamily BER93_RS07350 IPR020053 Ribosome-binding factor A, conserved site BER93_RS07350 IPR015946 K homology domain-like, alpha/beta BER93_RS07355 IPR002501 Pseudouridine synthase II, N-terminal BER93_RS07355 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS07355 IPR032819 tRNA pseudouridylate synthase B, C-terminal BER93_RS07355 IPR015947 PUA-like superfamily BER93_RS07355 IPR014780 tRNA pseudouridine synthase II, TruB BER93_RS07355 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal BER93_RS07360 IPR000589 Ribosomal protein S15 BER93_RS07360 IPR005290 Ribosomal protein S15, bacterial-type BER93_RS07360 IPR009068 S15/NS1, RNA-binding BER93_RS07365 IPR022967 RNA-binding domain, S1 BER93_RS07365 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS07365 IPR027408 PNPase/RNase PH domain superfamily BER93_RS07365 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain BER93_RS07365 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily BER93_RS07365 IPR012162 Polyribonucleotide nucleotidyltransferase BER93_RS07365 IPR012340 Nucleic acid-binding, OB-fold BER93_RS07365 IPR004087 K Homology domain BER93_RS07365 IPR004088 K Homology domain, type 1 BER93_RS07365 IPR036612 K Homology domain, type 1 superfamily BER93_RS07365 IPR036345 Exoribonuclease, PH domain 2 superfamily BER93_RS07365 IPR001247 Exoribonuclease, phosphorolytic domain 1 BER93_RS07365 IPR015847 Exoribonuclease, phosphorolytic domain 2 BER93_RS07365 IPR003029 S1 domain BER93_RS07370 IPR025161 Putative transposase IS4/IS5 family BER93_RS07375 IPR002559 Transposase, IS4-like BER93_RS07385 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal BER93_RS07385 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal BER93_RS07385 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily BER93_RS07385 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal BER93_RS07385 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD BER93_RS07385 IPR013785 Aldolase-type TIM barrel BER93_RS07385 IPR004393 Nicotinate-nucleotide pyrophosphorylase BER93_RS07395 IPR024694 PurE, prokaryotic type BER93_RS07395 IPR000031 PurE domain BER93_RS07395 IPR035893 PurE domain superfamily BER93_RS07395 IPR033747 Class I PurE BER93_RS07400 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit BER93_RS07400 IPR011054 Rudiment single hybrid motif BER93_RS07400 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain BER93_RS07400 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type BER93_RS07400 IPR011761 ATP-grasp fold BER93_RS07400 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS07400 IPR016185 Pre-ATP-grasp domain superfamily BER93_RS07405 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily BER93_RS07405 IPR019831 Manganese/iron superoxide dismutase, N-terminal BER93_RS07405 IPR019832 Manganese/iron superoxide dismutase, C-terminal BER93_RS07405 IPR019833 Manganese/iron superoxide dismutase, binding site BER93_RS07405 IPR001189 Manganese/iron superoxide dismutase BER93_RS07405 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily BER93_RS07410 IPR033658 Glutaredoxin, PICOT-like BER93_RS07410 IPR002109 Glutaredoxin BER93_RS07410 IPR014434 Monothiol glutaredoxin BER93_RS07410 IPR036249 Thioredoxin-like superfamily BER93_RS07410 IPR004480 Monothiol glutaredoxin-related BER93_RS07420 IPR002771 Multiple antibiotic resistance (MarC)-related BER93_RS07425 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS07425 IPR013784 Carbohydrate-binding-like fold BER93_RS07425 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS07430 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal BER93_RS07430 IPR031100 LOG family BER93_RS07430 IPR021826 Domain of unknown function DUF3412 BER93_RS07430 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily BER93_RS07440 IPR010559 Signal transduction histidine kinase, internal region BER93_RS07440 IPR003018 GAF domain BER93_RS07440 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region BER93_RS07440 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS07450 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BER93_RS07450 IPR008707 PilC beta-propeller domain BER93_RS07455 IPR008490 Transposase InsH, N-terminal BER93_RS07460 IPR003607 HD/PDEase domain BER93_RS07460 IPR037522 HD-GYP domain BER93_RS07460 IPR001789 Signal transduction response regulator, receiver domain BER93_RS07460 IPR011006 CheY-like superfamily BER93_RS07465 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS07465 IPR011006 CheY-like superfamily BER93_RS07465 IPR001789 Signal transduction response regulator, receiver domain BER93_RS07465 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS07465 IPR003660 HAMP domain BER93_RS07465 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS07465 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS07465 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS07465 IPR036641 HPT domain superfamily BER93_RS07465 IPR019247 Histidine kinase BarA, N-terminal BER93_RS07465 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS07465 IPR005467 Histidine kinase domain BER93_RS07470 IPR007383 Protein of unknown function DUF445 BER93_RS07475 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07475 IPR003593 AAA+ ATPase domain BER93_RS07475 IPR017871 ABC transporter, conserved site BER93_RS07475 IPR017882 Zinc import ATP-binding protein ZnuC BER93_RS07475 IPR003439 ABC transporter-like BER93_RS07485 IPR036259 MFS transporter superfamily BER93_RS07485 IPR020846 Major facilitator superfamily domain BER93_RS07485 IPR011701 Major facilitator superfamily BER93_RS07490 IPR016193 Cytidine deaminase-like BER93_RS07490 IPR003786 Sulfur carrier protein FdhD BER93_RS07495 IPR041953 YdeP, molybdopterin-binding oxidoreductase-like domain BER93_RS07495 IPR006656 Molybdopterin oxidoreductase BER93_RS07495 IPR009010 Aspartate decarboxylase-like domain superfamily BER93_RS07495 IPR010046 Oxidoreductase alpha (molybdopterin) subunit BER93_RS07495 IPR037951 YdeP-like, MopB domain BER93_RS07510 IPR002514 Transposase IS3/IS911family BER93_RS07510 IPR009057 Homeobox-like domain superfamily BER93_RS07515 IPR036397 Ribonuclease H superfamily BER93_RS07515 IPR012337 Ribonuclease H-like superfamily BER93_RS07515 IPR001584 Integrase, catalytic core BER93_RS07515 IPR025948 HTH-like domain BER93_RS07520 IPR029787 Nucleotide cyclase BER93_RS07520 IPR001789 Signal transduction response regulator, receiver domain BER93_RS07520 IPR011006 CheY-like superfamily BER93_RS07520 IPR000160 GGDEF domain BER93_RS07525 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS07525 IPR006076 FAD dependent oxidoreductase BER93_RS07530 IPR008146 Glutamine synthetase, catalytic domain BER93_RS07530 IPR027303 Glutamine synthetase, glycine-rich site BER93_RS07530 IPR036651 Glutamine synthetase, N-terminal domain superfamily BER93_RS07530 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_RS07535 IPR008146 Glutamine synthetase, catalytic domain BER93_RS07535 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_RS07535 IPR036651 Glutamine synthetase, N-terminal domain superfamily BER93_RS07540 IPR006059 Bacterial extracellular solute-binding protein BER93_RS07540 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein BER93_RS07545 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BER93_RS07550 IPR004638 Drug resistance transporter EmrB-like BER93_RS07550 IPR011701 Major facilitator superfamily BER93_RS07550 IPR020846 Major facilitator superfamily domain BER93_RS07550 IPR036259 MFS transporter superfamily BER93_RS07555 IPR003423 Outer membrane efflux protein BER93_RS07555 IPR010131 RND efflux system, outer membrane lipoprotein, NodT BER93_RS07560 IPR008995 Molybdate/tungstate binding, C-terminal BER93_RS07560 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07560 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit BER93_RS07560 IPR003593 AAA+ ATPase domain BER93_RS07560 IPR013611 Transport-associated OB, type 2 BER93_RS07560 IPR017871 ABC transporter, conserved site BER93_RS07560 IPR003439 ABC transporter-like BER93_RS07565 IPR035906 MetI-like superfamily BER93_RS07565 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS07570 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS07570 IPR035906 MetI-like superfamily BER93_RS07575 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_RS07575 IPR015590 Aldehyde dehydrogenase domain BER93_RS07575 IPR016161 Aldehyde/histidinol dehydrogenase BER93_RS07575 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_RS07585 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS07585 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS07585 IPR001610 PAC motif BER93_RS07585 IPR035965 PAS domain superfamily BER93_RS07585 IPR000700 PAS-associated, C-terminal BER93_RS07585 IPR000014 PAS domain BER93_RS07585 IPR011102 Signal transduction histidine kinase, HWE region BER93_RS07595 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 BER93_RS07595 IPR001036 Acriflavin resistance protein BER93_RS07595 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS07600 IPR006143 RND efflux pump, membrane fusion protein BER93_RS07600 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BER93_RS07610 IPR036291 NAD(P)-binding domain superfamily BER93_RS07610 IPR028971 NAD-glutamate dehydrogenase BER93_RS07610 IPR007780 NAD-glutamate dehydrogenase, bacteria BER93_RS07635 IPR008718 NolX BER93_RS07655 IPR022789 Antitoxin ParD BER93_RS07655 IPR038296 Antitoxin ParD superfamily BER93_RS07655 IPR010985 Ribbon-helix-helix BER93_RS07680 IPR002585 Cytochrome ubiquinol oxidase subunit 1 BER93_RS07690 IPR002559 Transposase, IS4-like BER93_RS07690 IPR008490 Transposase InsH, N-terminal BER93_RS07695 IPR002514 Transposase IS3/IS911family BER93_RS07695 IPR009057 Homeobox-like domain superfamily BER93_RS07700 IPR001584 Integrase, catalytic core BER93_RS07700 IPR012337 Ribonuclease H-like superfamily BER93_RS07700 IPR036397 Ribonuclease H superfamily BER93_RS07700 IPR025948 HTH-like domain BER93_RS07705 IPR036397 Ribonuclease H superfamily BER93_RS07705 IPR025948 HTH-like domain BER93_RS07705 IPR001584 Integrase, catalytic core BER93_RS07705 IPR012337 Ribonuclease H-like superfamily BER93_RS07715 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS07715 IPR001650 Helicase, C-terminal BER93_RS07715 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07715 IPR036876 UVR domain superfamily BER93_RS07715 IPR041471 UvrB, interaction domain BER93_RS07715 IPR004807 UvrABC system, subunit B BER93_RS07715 IPR024759 UvrB, YAD/RRR-motif-containing domain BER93_RS07715 IPR006935 Helicase/UvrB, N-terminal BER93_RS07715 IPR001943 UVR domain BER93_RS07745 IPR042217 Type IV secretion system, VirB10/TrbI BER93_RS07745 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI BER93_RS07750 IPR014155 Type IV secretion system protein VirB11 BER93_RS07750 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07750 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_RS07750 IPR001482 Type II/IV secretion system protein BER93_RS07755 IPR023346 Lysozyme-like domain superfamily BER93_RS07755 IPR008258 Transglycosylase SLT domain 1 BER93_RS07770 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07770 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain BER93_RS07770 IPR004346 CagE, TrbE, VirB component of type IV transporter system BER93_RS07785 IPR002559 Transposase, IS4-like BER93_RS07785 IPR008490 Transposase InsH, N-terminal BER93_RS07795 IPR002559 Transposase, IS4-like BER93_RS07795 IPR008490 Transposase InsH, N-terminal BER93_RS07810 IPR004346 CagE, TrbE, VirB component of type IV transporter system BER93_RS07810 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain BER93_RS07810 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07835 IPR004346 CagE, TrbE, VirB component of type IV transporter system BER93_RS07835 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07835 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain BER93_RS07875 IPR002559 Transposase, IS4-like BER93_RS07875 IPR008490 Transposase InsH, N-terminal BER93_RS07960 IPR000037 SsrA-binding protein BER93_RS07960 IPR023620 Small protein B BER93_RS07960 IPR020081 SsrA-binding protein, conserved site BER93_RS07970 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BER93_RS07970 IPR005346 RnfH protein BER93_RS07970 IPR037021 RnfH superfamily BER93_RS07975 IPR026592 Outer membrane protein assembly factor BamE BER93_RS07975 IPR037873 BamE-like BER93_RS07975 IPR007450 Lipoprotein SmpA/OmlA BER93_RS07980 IPR002481 Ferric-uptake regulator BER93_RS07980 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS07980 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS07985 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS07985 IPR003395 RecF/RecN/SMC, N-terminal BER93_RS07985 IPR004604 DNA recombination/repair protein RecN BER93_RS07990 IPR029016 GAF-like domain superfamily BER93_RS07990 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily BER93_RS07990 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain BER93_RS07990 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS07990 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS07990 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal BER93_RS07990 IPR002571 Heat-inducible transcription repressor HrcA BER93_RS07995 IPR009012 GrpE nucleotide exchange factor, head BER93_RS07995 IPR000740 GrpE nucleotide exchange factor BER93_RS07995 IPR013805 GrpE nucleotide exchange factor, coiled-coil BER93_RS08000 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily BER93_RS08000 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily BER93_RS08000 IPR018181 Heat shock protein 70, conserved site BER93_RS08000 IPR012725 Chaperone DnaK BER93_RS08000 IPR013126 Heat shock protein 70 family BER93_RS08005 IPR008971 HSP40/DnaJ peptide-binding BER93_RS08005 IPR002939 Chaperone DnaJ, C-terminal BER93_RS08005 IPR012724 Chaperone DnaJ BER93_RS08005 IPR001305 Heat shock protein DnaJ, cysteine-rich domain BER93_RS08005 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily BER93_RS08005 IPR036869 Chaperone J-domain superfamily BER93_RS08005 IPR001623 DnaJ domain BER93_RS08010 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase BER93_RS08010 IPR004625 Pyridoxine kinase BER93_RS08010 IPR023479 Pyridoxine/pyridoxal/pyridoxamine kinase BER93_RS08010 IPR029056 Ribokinase-like BER93_RS08015 IPR003099 Prephenate dehydrogenase BER93_RS08015 IPR036263 Chorismate mutase type II superfamily BER93_RS08015 IPR002701 Chorismate mutase II, prokaryotic-type BER93_RS08015 IPR011277 Chorismate mutase, T-protein BER93_RS08015 IPR036291 NAD(P)-binding domain superfamily BER93_RS08015 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein BER93_RS08015 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS08015 IPR036979 Chorismate mutase domain superfamily BER93_RS08035 IPR010132 ATPase, type I secretion system, HlyB BER93_RS08035 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS08035 IPR039395 Peptidase C39-like A BER93_RS08035 IPR003593 AAA+ ATPase domain BER93_RS08035 IPR039421 Type I protein exporter BER93_RS08035 IPR017871 ABC transporter, conserved site BER93_RS08035 IPR005074 Peptidase C39, bacteriocin processing BER93_RS08035 IPR003439 ABC transporter-like BER93_RS08035 IPR011527 ABC transporter type 1, transmembrane domain BER93_RS08035 IPR036640 ABC transporter type 1, transmembrane domain superfamily BER93_RS08050 IPR011527 ABC transporter type 1, transmembrane domain BER93_RS08050 IPR039421 Type I protein exporter BER93_RS08050 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS08050 IPR011917 ABC transporter, lipid A export, MsbA BER93_RS08050 IPR017871 ABC transporter, conserved site BER93_RS08050 IPR003439 ABC transporter-like BER93_RS08050 IPR003593 AAA+ ATPase domain BER93_RS08050 IPR036640 ABC transporter type 1, transmembrane domain superfamily BER93_RS08060 IPR031100 LOG family BER93_RS08060 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG BER93_RS08065 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS08065 IPR023753 FAD/NAD(P)-binding domain BER93_RS08065 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I BER93_RS08065 IPR006258 Dihydrolipoamide dehydrogenase BER93_RS08065 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site BER93_RS08065 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_RS08065 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily BER93_RS08070 IPR036625 E3-binding domain superfamily BER93_RS08070 IPR004167 Peripheral subunit-binding domain BER93_RS08070 IPR011053 Single hybrid motif BER93_RS08070 IPR006255 Dihydrolipoamide succinyltransferase BER93_RS08070 IPR000089 Biotin/lipoyl attachment BER93_RS08070 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain BER93_RS08070 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER93_RS08070 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily BER93_RS08075 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain BER93_RS08075 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily BER93_RS08075 IPR005475 Transketolase-like, pyrimidine-binding domain BER93_RS08075 IPR029061 Thiamin diphosphate-binding fold BER93_RS08075 IPR011603 2-oxoglutarate dehydrogenase E1 component BER93_RS08075 IPR001017 Dehydrogenase, E1 component BER93_RS08075 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal BER93_RS08085 IPR039994 JmjC domain-containing BER93_RS08085 IPR003347 JmjC domain BER93_RS08090 IPR008948 L-Aspartase-like BER93_RS08090 IPR022761 Fumarate lyase, N-terminal BER93_RS08090 IPR020557 Fumarate lyase, conserved site BER93_RS08090 IPR024083 Fumarase/histidase, N-terminal BER93_RS08090 IPR000362 Fumarate lyase family BER93_RS08090 IPR013539 Adenylosuccinate lyase PurB, C-terminal BER93_RS08090 IPR004769 Adenylosuccinate lyase BER93_RS08095 IPR020557 Fumarate lyase, conserved site BER93_RS08095 IPR008948 L-Aspartase-like BER93_RS08095 IPR005677 Fumarate hydratase, class II BER93_RS08095 IPR024083 Fumarase/histidase, N-terminal BER93_RS08095 IPR000362 Fumarate lyase family BER93_RS08095 IPR022761 Fumarate lyase, N-terminal BER93_RS08095 IPR018951 Fumarase C, C-terminal BER93_RS08100 IPR002559 Transposase, IS4-like BER93_RS08100 IPR008490 Transposase InsH, N-terminal BER93_RS08105 IPR009057 Homeobox-like domain superfamily BER93_RS08105 IPR002514 Transposase IS3/IS911family BER93_RS08110 IPR001584 Integrase, catalytic core BER93_RS08110 IPR025948 HTH-like domain BER93_RS08110 IPR036397 Ribonuclease H superfamily BER93_RS08110 IPR012337 Ribonuclease H-like superfamily BER93_RS08115 IPR001584 Integrase, catalytic core BER93_RS08115 IPR036397 Ribonuclease H superfamily BER93_RS08115 IPR025948 HTH-like domain BER93_RS08115 IPR012337 Ribonuclease H-like superfamily BER93_RS08120 IPR002559 Transposase, IS4-like BER93_RS08120 IPR008490 Transposase InsH, N-terminal BER93_RS08130 IPR025161 Putative transposase IS4/IS5 family BER93_RS08145 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS08145 IPR003439 ABC transporter-like BER93_RS08145 IPR003593 AAA+ ATPase domain BER93_RS08150 IPR000524 Transcription regulator HTH, GntR BER93_RS08150 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS08150 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS08160 IPR029759 Glutathione peroxidase active site BER93_RS08160 IPR000889 Glutathione peroxidase BER93_RS08160 IPR036249 Thioredoxin-like superfamily BER93_RS08160 IPR029760 Glutathione peroxidase conserved site BER93_RS08165 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal BER93_RS08165 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BER93_RS08165 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily BER93_RS08165 IPR008104 Macrophage infectivity potentiator BER93_RS08170 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS08170 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type BER93_RS08170 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal BER93_RS08170 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation BER93_RS08170 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily BER93_RS08170 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal BER93_RS08170 IPR017476 UDP-glucose/GDP-mannose dehydrogenase BER93_RS08170 IPR036291 NAD(P)-binding domain superfamily BER93_RS08175 IPR007236 SlyX BER93_RS08190 IPR000843 LacI-type HTH domain BER93_RS08190 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS08190 IPR028082 Periplasmic binding protein-like I BER93_RS08195 IPR005964 Bacterial glucose/galactose transporter BER93_RS08195 IPR036259 MFS transporter superfamily BER93_RS08195 IPR011701 Major facilitator superfamily BER93_RS08200 IPR011611 Carbohydrate kinase PfkB BER93_RS08200 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site BER93_RS08200 IPR029056 Ribokinase-like BER93_RS08210 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain BER93_RS08210 IPR000489 Pterin-binding domain BER93_RS08210 IPR003726 Homocysteine-binding domain BER93_RS08210 IPR036589 Homocysteine-binding domain superfamily BER93_RS08210 IPR011005 Dihydropteroate synthase-like BER93_RS08210 IPR036724 Cobalamin-binding domain superfamily BER93_RS08210 IPR006158 Cobalamin (vitamin B12)-binding domain BER93_RS08210 IPR033706 Methionine synthase, B12-binding domain BER93_RS08210 IPR011822 Cobalamin-dependent methionine synthase BER93_RS08210 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily BER93_RS08210 IPR004223 Vitamin B12-dependent methionine synthase, activation domain BER93_RS08210 IPR036594 Methionine synthase domain BER93_RS08215 IPR003726 Homocysteine-binding domain BER93_RS08215 IPR000489 Pterin-binding domain BER93_RS08215 IPR011005 Dihydropteroate synthase-like BER93_RS08215 IPR036589 Homocysteine-binding domain superfamily BER93_RS08220 IPR023576 UbiE/COQ5 methyltransferase, conserved site BER93_RS08220 IPR004033 UbiE/COQ5 methyltransferase BER93_RS08220 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS08225 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal BER93_RS08225 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain BER93_RS08225 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily BER93_RS08225 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_RS08225 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily BER93_RS08225 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_RS08225 IPR006089 Acyl-CoA dehydrogenase, conserved site BER93_RS08240 IPR004476 Ribonuclease II/ribonuclease R BER93_RS08240 IPR011129 Cold shock domain BER93_RS08240 IPR012340 Nucleic acid-binding, OB-fold BER93_RS08240 IPR022967 RNA-binding domain, S1 BER93_RS08240 IPR040476 RNase II/RNase R, cold shock domain BER93_RS08240 IPR013668 Ribonuclease R winged-helix domain BER93_RS08240 IPR011805 Ribonuclease R BER93_RS08240 IPR003029 S1 domain BER93_RS08240 IPR022966 Ribonuclease II/R, conserved site BER93_RS08240 IPR001900 Ribonuclease II/R BER93_RS08240 IPR013223 Ribonuclease B, N-terminal OB domain BER93_RS08245 IPR004441 RNA methyltransferase TrmH family BER93_RS08245 IPR001537 tRNA/rRNA methyltransferase, SpoU type BER93_RS08245 IPR013123 RNA 2-O ribose methyltransferase, substrate binding BER93_RS08245 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB BER93_RS08245 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_RS08245 IPR029064 50S ribosomal protein L30e-like BER93_RS08245 IPR029028 Alpha/beta knot methyltransferases BER93_RS08255 IPR012337 Ribonuclease H-like superfamily BER93_RS08255 IPR013520 Exonuclease, RNase T/DNA polymerase III BER93_RS08255 IPR005987 Ribonuclease T BER93_RS08255 IPR036397 Ribonuclease H superfamily BER93_RS08260 IPR038078 PhoU-like domain superfamily BER93_RS08260 IPR028366 Phosphate transport system protein PhoU BER93_RS08260 IPR026022 PhoU domain BER93_RS08265 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS08265 IPR005670 Phosphate transport system permease protein 1 BER93_RS08265 IPR003593 AAA+ ATPase domain BER93_RS08265 IPR003439 ABC transporter-like BER93_RS08265 IPR017871 ABC transporter, conserved site BER93_RS08265 IPR015850 ABC transporter, phosphate import, PstB BER93_RS08270 IPR005672 Phosphate transport system permease protein PstA BER93_RS08270 IPR035906 MetI-like superfamily BER93_RS08270 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS08275 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS08275 IPR035906 MetI-like superfamily BER93_RS08275 IPR011864 Phosphate ABC transporter, permease protein PstC BER93_RS08280 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS BER93_RS08280 IPR024370 PBP domain BER93_RS08290 IPR024370 PBP domain BER93_RS08290 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS BER93_RS08310 IPR001765 Carbonic anhydrase BER93_RS08310 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site BER93_RS08310 IPR036874 Carbonic anhydrase superfamily BER93_RS08315 IPR002645 STAS domain BER93_RS08315 IPR001902 SLC26A/SulP transporter BER93_RS08315 IPR011547 SLC26A/SulP transporter domain BER93_RS08315 IPR036513 STAS domain superfamily BER93_RS08320 IPR005759 Endonuclease III BER93_RS08320 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal BER93_RS08320 IPR011257 DNA glycosylase BER93_RS08320 IPR004036 Endonuclease III-like, conserved site-2 BER93_RS08320 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif BER93_RS08320 IPR004035 Endonuclease III, iron-sulphur binding site BER93_RS08320 IPR000445 Helix-hairpin-helix motif BER93_RS08320 IPR003265 HhH-GPD domain BER93_RS08335 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily BER93_RS08335 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal BER93_RS08335 IPR008104 Macrophage infectivity potentiator BER93_RS08335 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BER93_RS08340 IPR015797 NUDIX hydrolase-like domain superfamily BER93_RS08340 IPR023735 Uncharacterised nudix hydrolase NudL BER93_RS08340 IPR000086 NUDIX hydrolase domain BER93_RS08340 IPR000059 NUDIX hydrolase, NudL, conserved site BER93_RS08345 IPR001763 Rhodanese-like domain BER93_RS08345 IPR036873 Rhodanese-like domain superfamily BER93_RS08380 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS08380 IPR000241 Putative RNA methylase domain BER93_RS08380 IPR017244 Ribosomal RNA large subunit methyltransferase K/L BER93_RS08380 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_RS08380 IPR004114 THUMP domain BER93_RS08380 IPR019614 S-adenosylmethionine-dependent methyltransferase BER93_RS08385 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal BER93_RS08385 IPR002504 NAD kinase BER93_RS08385 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal BER93_RS08385 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily BER93_RS08395 IPR002559 Transposase, IS4-like BER93_RS08395 IPR008490 Transposase InsH, N-terminal BER93_RS08410 IPR013520 Exonuclease, RNase T/DNA polymerase III BER93_RS08410 IPR012337 Ribonuclease H-like superfamily BER93_RS08410 IPR013620 Exodeoxyribonuclease I, C-terminal BER93_RS08410 IPR038649 Exonuclease I, SH3-like domain superfamily BER93_RS08410 IPR034748 Exonuclease I, C-terminal alpha-helical domain BER93_RS08410 IPR034747 Exonuclease I, SH3-like domain BER93_RS08410 IPR023607 Exodeoxyribonuclease I BER93_RS08410 IPR036397 Ribonuclease H superfamily BER93_RS08415 IPR027545 Kynurenine 3-monooxygenase BER93_RS08415 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS08415 IPR002938 FAD-binding domain BER93_RS08420 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS08420 IPR010111 Kynureninase BER93_RS08420 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS08420 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS08420 IPR000192 Aminotransferase class V domain BER93_RS08430 IPR010329 3-hydroxyanthranilic acid dioxygenase BER93_RS08430 IPR014710 RmlC-like jelly roll fold BER93_RS08430 IPR011051 RmlC-like cupin domain superfamily BER93_RS08435 IPR001765 Carbonic anhydrase BER93_RS08435 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site BER93_RS08435 IPR036874 Carbonic anhydrase superfamily BER93_RS08440 IPR007396 Transcriptional regulator PAI 2-type BER93_RS08440 IPR012349 FMN-binding split barrel BER93_RS08460 IPR006195 Aminoacyl-tRNA synthetase, class II BER93_RS08460 IPR012340 Nucleic acid-binding, OB-fold BER93_RS08460 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb BER93_RS08460 IPR004522 Asparagine-tRNA ligase BER93_RS08460 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) BER93_RS08460 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type BER93_RS08465 IPR017870 FeS cluster insertion, C-terminal, conserved site BER93_RS08465 IPR000361 FeS cluster biogenesis BER93_RS08465 IPR016092 FeS cluster insertion protein BER93_RS08465 IPR035903 HesB-like domain superfamily BER93_RS08470 IPR000529 Ribosomal protein S6 BER93_RS08470 IPR035980 Ribosomal protein S6 superfamily BER93_RS08470 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BER93_RS08470 IPR020814 Ribosomal protein S6, plastid/chloroplast BER93_RS08475 IPR001648 Ribosomal protein S18 BER93_RS08475 IPR036870 Ribosomal protein S18 superfamily BER93_RS08475 IPR018275 Ribosomal protein S18, conserved site BER93_RS08480 IPR000244 Ribosomal protein L9 BER93_RS08480 IPR020594 Ribosomal protein L9, bacteria/chloroplast BER93_RS08480 IPR009027 Ribosomal protein L9/RNase H1, N-terminal BER93_RS08480 IPR036935 Ribosomal protein L9, N-terminal domain superfamily BER93_RS08480 IPR020070 Ribosomal protein L9, N-terminal BER93_RS08480 IPR036791 Ribosomal protein L9, C-terminal domain superfamily BER93_RS08480 IPR020069 Ribosomal protein L9, C-terminal BER93_RS08485 IPR010935 SMCs flexible hinge BER93_RS08485 IPR011890 Structural maintenance of chromosomes protein, prokaryotic BER93_RS08485 IPR036277 SMCs flexible hinge superfamily BER93_RS08485 IPR024704 Structural maintenance of chromosomes protein BER93_RS08485 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS08485 IPR003395 RecF/RecN/SMC, N-terminal BER93_RS08490 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily BER93_RS08490 IPR007449 ZipA, C-terminal FtsZ-binding domain BER93_RS08490 IPR011919 Cell division protein ZipA BER93_RS08495 IPR012340 Nucleic acid-binding, OB-fold BER93_RS08495 IPR041663 DisA/LigA, helix-hairpin-helix motif BER93_RS08495 IPR018239 NAD-dependent DNA ligase, active site BER93_RS08495 IPR001679 NAD-dependent DNA ligase BER93_RS08495 IPR001357 BRCT domain BER93_RS08495 IPR036420 BRCT domain superfamily BER93_RS08495 IPR013840 NAD-dependent DNA ligase, N-terminal BER93_RS08495 IPR004150 NAD-dependent DNA ligase, OB-fold BER93_RS08495 IPR010994 RuvA domain 2-like BER93_RS08495 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type BER93_RS08495 IPR013839 NAD-dependent DNA ligase, adenylation BER93_RS08500 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) BER93_RS08500 IPR004525 Elongation factor P--(R)-beta-lysine ligase BER93_RS08500 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal BER93_RS08500 IPR006195 Aminoacyl-tRNA synthetase, class II BER93_RS08515 IPR000649 Initiation factor 2B-related BER93_RS08515 IPR005251 Methylthioribose-1-phosphate isomerase BER93_RS08515 IPR011559 Initiation factor 2B alpha/beta/delta BER93_RS08515 IPR037171 NagB/RpiA transferase-like BER93_RS08515 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal BER93_RS08520 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat BER93_RS08520 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BER93_RS08520 IPR013760 DNA topoisomerase, type IIA-like domain superfamily BER93_RS08520 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal BER93_RS08520 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta BER93_RS08520 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily BER93_RS08520 IPR005743 DNA gyrase, subunit A BER93_RS08535 IPR035400 Urocanase, N-terminal domain BER93_RS08535 IPR023636 Urocanase conserved site BER93_RS08535 IPR038364 Urocanase, central domain superfamily BER93_RS08535 IPR023637 Urocanase BER93_RS08535 IPR035085 Urocanase, Rossmann-like domain BER93_RS08535 IPR035401 Urocanase, C-terminal domain BER93_RS08535 IPR036190 Urocanase superfamily BER93_RS08545 IPR001106 Aromatic amino acid lyase BER93_RS08545 IPR008948 L-Aspartase-like BER93_RS08545 IPR024083 Fumarase/histidase, N-terminal BER93_RS08545 IPR022313 Phenylalanine/histidine ammonia-lyases, active site BER93_RS08545 IPR005921 Histidine ammonia-lyase BER93_RS08550 IPR005920 Imidazolonepropionase BER93_RS08550 IPR013108 Amidohydrolase 3 BER93_RS08550 IPR032466 Metal-dependent hydrolase BER93_RS08550 IPR011059 Metal-dependent hydrolase, composite domain superfamily BER93_RS08580 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ BER93_RS08580 IPR013130 Ferric reductase transmembrane component-like domain BER93_RS08585 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 BER93_RS08585 IPR033177 Phosphatidylserine decarboxylase BER93_RS08585 IPR003817 Phosphatidylserine decarboxylase-related BER93_RS08590 IPR036249 Thioredoxin-like superfamily BER93_RS08590 IPR003782 Copper chaperone SCO1/SenC BER93_RS08595 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS08595 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_RS08595 IPR004556 Methyltransferase HemK-like BER93_RS08595 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase BER93_RS08595 IPR007848 Methyltransferase small domain BER93_RS08605 IPR020541 Chorismate synthase, conserved site BER93_RS08605 IPR000453 Chorismate synthase BER93_RS08605 IPR035904 Chorismate synthase AroC superfamily BER93_RS08610 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_RS08610 IPR036291 NAD(P)-binding domain superfamily BER93_RS08610 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain BER93_RS08610 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER93_RS08610 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BER93_RS08615 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type BER93_RS08615 IPR036291 NAD(P)-binding domain superfamily BER93_RS08615 IPR000534 Semialdehyde dehydrogenase, NAD-binding BER93_RS08615 IPR012280 Semialdehyde dehydrogenase, dimerisation domain BER93_RS08615 IPR012080 Aspartate-semialdehyde dehydrogenase BER93_RS08625 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site BER93_RS08625 IPR003660 HAMP domain BER93_RS08625 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS08625 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding BER93_RS08625 IPR004090 Chemotaxis methyl-accepting receptor BER93_RS08625 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BER93_RS08630 IPR013503 Circadian clock KaiC, bacteria BER93_RS08630 IPR030665 Circadian clock protein kinase KaiC BER93_RS08630 IPR014774 KaiC-like domain BER93_RS08630 IPR010624 KaiC domain BER93_RS08630 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS08635 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS08635 IPR013656 PAS fold-4 BER93_RS08635 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS08635 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS08635 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS08635 IPR000014 PAS domain BER93_RS08635 IPR035965 PAS domain superfamily BER93_RS08635 IPR005467 Histidine kinase domain BER93_RS08635 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS08635 IPR011006 CheY-like superfamily BER93_RS08635 IPR001789 Signal transduction response regulator, receiver domain BER93_RS08640 IPR009057 Homeobox-like domain superfamily BER93_RS08640 IPR002514 Transposase IS3/IS911family BER93_RS08660 IPR005616 CcmH/CycL/Ccl2/NrfF family BER93_RS08660 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily BER93_RS08665 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal BER93_RS08665 IPR002541 Cytochrome c assembly protein BER93_RS08665 IPR003567 Cytochrome c-type biogenesis protein BER93_RS08665 IPR003568 Cytochrome c-type biogenesis protein CcmF BER93_RS08670 IPR003557 Cytochrome c-type biogenesis protein CcmC BER93_RS08670 IPR002541 Cytochrome c assembly protein BER93_RS08675 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_RS08675 IPR036852 Peptidase S8/S53 domain superfamily BER93_RS08675 IPR023827 Peptidase S8, subtilisin, Asp-active site BER93_RS08675 IPR022398 Peptidase S8, subtilisin, His-active site BER93_RS08675 IPR015500 Peptidase S8, subtilisin-related BER93_RS08675 IPR034084 Thermitase-like, domain BER93_RS08675 IPR000209 Peptidase S8/S53 domain BER93_RS08685 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site BER93_RS08685 IPR014286 RNA polymerase sigma-70 RpoE type BER93_RS08685 IPR013325 RNA polymerase sigma factor, region 2 BER93_RS08685 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS08685 IPR013324 RNA polymerase sigma factor, region 3/4-like BER93_RS08685 IPR039425 RNA polymerase sigma-70 like BER93_RS08685 IPR007627 RNA polymerase sigma-70 region 2 BER93_RS08685 IPR014284 RNA polymerase sigma-70 like domain BER93_RS08685 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 BER93_RS08710 IPR020846 Major facilitator superfamily domain BER93_RS08710 IPR005829 Sugar transporter, conserved site BER93_RS08710 IPR003663 Sugar/inositol transporter BER93_RS08710 IPR036259 MFS transporter superfamily BER93_RS08710 IPR005828 Major facilitator, sugar transporter-like BER93_RS08715 IPR011251 Luciferase-like domain BER93_RS08715 IPR036661 Luciferase-like domain superfamily BER93_RS08715 IPR019949 Luciferase family oxidoreductase, group 1 BER93_RS08725 IPR000644 CBS domain BER93_RS08725 IPR002550 CNNM, transmembrane domain BER93_RS08725 IPR016169 FAD-binding, type PCMH, subdomain 2 BER93_RS08725 IPR005170 Transporter-associated domain BER93_RS08725 IPR036318 FAD-binding, type PCMH-like superfamily BER93_RS08735 IPR001204 Phosphate transporter BER93_RS08740 IPR003848 Domain of unknown function DUF218 BER93_RS08750 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS08750 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal BER93_RS08750 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS08750 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS08750 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS08750 IPR002288 DNA gyrase B subunit, C-terminal BER93_RS08750 IPR001241 DNA topoisomerase, type IIA BER93_RS08750 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 BER93_RS08750 IPR013760 DNA topoisomerase, type IIA-like domain superfamily BER93_RS08750 IPR018522 DNA topoisomerase, type IIA, conserved site BER93_RS08750 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative BER93_RS08750 IPR006171 TOPRIM domain BER93_RS08760 IPR017456 CTP synthase, N-terminal BER93_RS08760 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS08760 IPR017926 Glutamine amidotransferase BER93_RS08760 IPR029062 Class I glutamine amidotransferase-like BER93_RS08760 IPR004468 CTP synthase BER93_RS08760 IPR033828 CTP synthase GATase domain BER93_RS08765 IPR006218 DAHP synthetase I/KDSA BER93_RS08765 IPR006269 3-deoxy-8-phosphooctulonate synthase BER93_RS08765 IPR013785 Aldolase-type TIM barrel BER93_RS08770 IPR020809 Enolase, conserved site BER93_RS08770 IPR020810 Enolase, C-terminal TIM barrel domain BER93_RS08770 IPR029017 Enolase-like, N-terminal BER93_RS08770 IPR000941 Enolase BER93_RS08770 IPR020811 Enolase, N-terminal BER93_RS08770 IPR036849 Enolase-like, C-terminal domain superfamily BER93_RS08775 IPR023081 Cell division protein FtsB BER93_RS08775 IPR007060 Septum formation initiator FtsL/DivIC BER93_RS08780 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS08780 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site BER93_RS08780 IPR034683 Cytidylyltransferase IspD/TarI BER93_RS08780 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BER93_RS08785 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily BER93_RS08785 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site BER93_RS08785 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase BER93_RS08790 IPR042214 Pseudouridine synthase, TruD, catalytic domain BER93_RS08790 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS08790 IPR001656 Pseudouridine synthase, TruD BER93_RS08790 IPR020119 Pseudouridine synthase TruD, conserved site BER93_RS08790 IPR011760 Pseudouridine synthase, TruD, insertion domain BER93_RS08795 IPR002625 Smr domain BER93_RS08795 IPR036063 Smr domain superfamily BER93_RS08795 IPR022990 Uncharacterised protein family UPF0115 BER93_RS08800 IPR036523 SurE-like phosphatase/nucleotidase superfamily BER93_RS08800 IPR002828 Survival protein SurE-like phosphatase/nucleotidase BER93_RS08800 IPR030048 Survival protein SurE BER93_RS08805 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase BER93_RS08805 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS08810 IPR032816 SNARE associated Golgi protein BER93_RS08815 IPR036779 LysM domain superfamily BER93_RS08815 IPR016047 Peptidase M23 BER93_RS08815 IPR018392 LysM domain BER93_RS08815 IPR011055 Duplicated hybrid motif BER93_RS08850 IPR008490 Transposase InsH, N-terminal BER93_RS08855 IPR008220 Homoserine/serine acetyltransferase MetX-like BER93_RS08855 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS08855 IPR029058 Alpha/Beta hydrolase fold BER93_RS08860 IPR008490 Transposase InsH, N-terminal BER93_RS08865 IPR019734 Tetratricopeptide repeat BER93_RS08865 IPR011990 Tetratricopeptide-like helical domain superfamily BER93_RS08865 IPR013026 Tetratricopeptide repeat-containing domain BER93_RS08865 IPR017560 Cytochrome c-type biogenesis protein CcmI BER93_RS08870 IPR005616 CcmH/CycL/Ccl2/NrfF family BER93_RS08870 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily BER93_RS08875 IPR017937 Thioredoxin, conserved site BER93_RS08875 IPR036249 Thioredoxin-like superfamily BER93_RS08875 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE BER93_RS08875 IPR013766 Thioredoxin domain BER93_RS08875 IPR013740 Redoxin BER93_RS08880 IPR002541 Cytochrome c assembly protein BER93_RS08880 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal BER93_RS08880 IPR003567 Cytochrome c-type biogenesis protein BER93_RS08880 IPR003568 Cytochrome c-type biogenesis protein CcmF BER93_RS08885 IPR036127 CcmE-like superfamily BER93_RS08885 IPR004329 CcmE/CycJ protein BER93_RS08895 IPR003557 Cytochrome c-type biogenesis protein CcmC BER93_RS08895 IPR002541 Cytochrome c assembly protein BER93_RS08900 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria BER93_RS08900 IPR003544 Cytochrome c-type biogenesis protein CcmB BER93_RS08905 IPR003593 AAA+ ATPase domain BER93_RS08905 IPR017871 ABC transporter, conserved site BER93_RS08905 IPR005895 ABC transporter, haem export, CcmA BER93_RS08905 IPR003439 ABC transporter-like BER93_RS08905 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS08910 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS08910 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS08910 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS08910 IPR004839 Aminotransferase, class I/classII BER93_RS08915 IPR001110 Uncharacterised protein family UPF0012, conserved site BER93_RS08915 IPR036526 Carbon-nitrogen hydrolase superfamily BER93_RS08915 IPR003010 Carbon-nitrogen hydrolase BER93_RS08930 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_RS08930 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site BER93_RS08930 IPR002942 RNA-binding S4 domain BER93_RS08930 IPR036986 RNA-binding S4 domain superfamily BER93_RS08930 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS08930 IPR006145 Pseudouridine synthase, RsuA/RluA BER93_RS08930 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain BER93_RS08935 IPR005234 Chromosome segregation/condensation protein ScpB BER93_RS08935 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS08935 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS08940 IPR003768 Segregation and condensation protein A BER93_RS08945 IPR005545 YCII-related BER93_RS08945 IPR011008 Dimeric alpha-beta barrel BER93_RS08955 IPR000843 LacI-type HTH domain BER93_RS08955 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS08955 IPR028082 Periplasmic binding protein-like I BER93_RS08975 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS08975 IPR035906 MetI-like superfamily BER93_RS08980 IPR035906 MetI-like superfamily BER93_RS08980 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS08995 IPR008490 Transposase InsH, N-terminal BER93_RS09010 IPR001110 Uncharacterised protein family UPF0012, conserved site BER93_RS09010 IPR036526 Carbon-nitrogen hydrolase superfamily BER93_RS09010 IPR003010 Carbon-nitrogen hydrolase BER93_RS09015 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type BER93_RS09015 IPR017754 Agmatine deiminase BER93_RS09025 IPR011994 Cytidylate kinase domain BER93_RS09025 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS09025 IPR003136 Cytidylate kinase BER93_RS09030 IPR022967 RNA-binding domain, S1 BER93_RS09030 IPR003029 S1 domain BER93_RS09030 IPR012340 Nucleic acid-binding, OB-fold BER93_RS09030 IPR000110 Ribosomal protein S1 BER93_RS09035 IPR000119 Histone-like DNA-binding protein BER93_RS09035 IPR020816 Histone-like DNA-binding protein, conserved site BER93_RS09035 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily BER93_RS09035 IPR005685 Integration host factor, beta subunit BER93_RS09045 IPR030865 Lipopolysaccharide assembly protein B BER93_RS09045 IPR041166 LapB, rubredoxin metal binding domain BER93_RS09045 IPR013026 Tetratricopeptide repeat-containing domain BER93_RS09045 IPR011990 Tetratricopeptide-like helical domain superfamily BER93_RS09045 IPR019734 Tetratricopeptide repeat BER93_RS09050 IPR000715 Glycosyl transferase, family 4 BER93_RS09055 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS09055 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain BER93_RS09055 IPR036291 NAD(P)-binding domain superfamily BER93_RS09060 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS09060 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type BER93_RS09060 IPR005835 Nucleotidyl transferase domain BER93_RS09065 IPR036291 NAD(P)-binding domain superfamily BER93_RS09065 IPR038770 Sodium/solute symporter superfamily BER93_RS09065 IPR006153 Cation/H+ exchanger BER93_RS09065 IPR023941 Glutathione-regulated potassium-efflux system protein KefC BER93_RS09065 IPR006036 Potassium uptake protein TrkA BER93_RS09065 IPR003148 Regulator of K+ conductance, N-terminal BER93_RS09065 IPR004771 K+/H+ exchanger BER93_RS09070 IPR009057 Homeobox-like domain superfamily BER93_RS09070 IPR002514 Transposase IS3/IS911family BER93_RS09075 IPR025948 HTH-like domain BER93_RS09085 IPR008490 Transposase InsH, N-terminal BER93_RS09100 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BER93_RS09100 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site BER93_RS09100 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BER93_RS09100 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase BER93_RS09100 IPR036291 NAD(P)-binding domain superfamily BER93_RS09105 IPR001093 IMP dehydrogenase/GMP reductase BER93_RS09105 IPR015875 IMP dehydrogenase / GMP reductase, conserved site BER93_RS09105 IPR005990 Inosine-5'-monophosphate dehydrogenase BER93_RS09105 IPR000644 CBS domain BER93_RS09105 IPR013785 Aldolase-type TIM barrel BER93_RS09110 IPR001674 GMP synthase, C-terminal BER93_RS09110 IPR022955 GMP synthase BER93_RS09110 IPR029062 Class I glutamine amidotransferase-like BER93_RS09110 IPR025777 GMP synthetase ATP pyrophosphatase domain BER93_RS09110 IPR017926 Glutamine amidotransferase BER93_RS09110 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS09110 IPR004739 GMP synthase, glutamine amidotransferase BER93_RS09110 IPR022310 NAD/GMP synthase BER93_RS09115 IPR002104 Integrase, catalytic domain BER93_RS09115 IPR013762 Integrase-like, catalytic domain superfamily BER93_RS09115 IPR025166 Integrase, DNA-binding domain BER93_RS09115 IPR010998 Integrase/recombinase, N-terminal BER93_RS09115 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_RS09115 IPR038488 Integrase, DNA-binding domain superfamily BER93_RS09125 IPR008490 Transposase InsH, N-terminal BER93_RS09140 IPR038724 Regulatory protein RepA BER93_RS09140 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS09150 IPR035225 Protein of unknown function DUF5338 BER93_RS09155 IPR010985 Ribbon-helix-helix BER93_RS09155 IPR013321 Arc-type ribbon-helix-helix BER93_RS09160 IPR002716 PIN domain BER93_RS09160 IPR022907 VapC family BER93_RS09160 IPR029060 PIN-like domain superfamily BER93_RS09170 IPR002514 Transposase IS3/IS911family BER93_RS09170 IPR009057 Homeobox-like domain superfamily BER93_RS09175 IPR008490 Transposase InsH, N-terminal BER93_RS09180 IPR036397 Ribonuclease H superfamily BER93_RS09180 IPR012337 Ribonuclease H-like superfamily BER93_RS09180 IPR001584 Integrase, catalytic core BER93_RS09180 IPR025948 HTH-like domain BER93_RS09205 IPR008490 Transposase InsH, N-terminal BER93_RS09210 IPR004154 Anticodon-binding BER93_RS09210 IPR036621 Anticodon-binding domain superfamily BER93_RS09210 IPR015807 Histidine-tRNA ligase BER93_RS09210 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain BER93_RS09210 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit BER93_RS09210 IPR006195 Aminoacyl-tRNA synthetase, class II BER93_RS09210 IPR033656 Histidyl-anticodon-binding BER93_RS09220 IPR018198 ATP phosphoribosyltransferase, conserved site BER93_RS09220 IPR013820 ATP phosphoribosyltransferase, catalytic domain BER93_RS09220 IPR013115 Histidine biosynthesis HisG, C-terminal BER93_RS09220 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER93_RS09220 IPR001348 ATP phosphoribosyltransferase HisG BER93_RS09220 IPR020621 ATP phosphoribosyltransferase HisG, long form BER93_RS09225 IPR012131 Histidinol dehydrogenase BER93_RS09225 IPR001692 Histidinol dehydrogenase, conserved site BER93_RS09225 IPR016161 Aldehyde/histidinol dehydrogenase BER93_RS09225 IPR022695 Histidinol dehydrogenase, monofunctional BER93_RS09230 IPR004839 Aminotransferase, class I/classII BER93_RS09230 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS09230 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS09230 IPR005861 Histidinol-phosphate aminotransferase family BER93_RS09230 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS09235 IPR006549 HAD-superfamily hydrolase,subfamily IIIA BER93_RS09235 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site BER93_RS09235 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS09235 IPR023214 HAD superfamily BER93_RS09235 IPR000807 Imidazoleglycerol-phosphate dehydratase BER93_RS09235 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily BER93_RS09235 IPR006543 Histidinol-phosphate phosphatase BER93_RS09235 IPR005954 Histidinol-phosphatase BER93_RS09235 IPR020566 Histidine biosynthesis bifunctional protein HisB BER93_RS09235 IPR036412 HAD-like superfamily BER93_RS09240 IPR010139 Imidazole glycerol phosphate synthase, subunit H BER93_RS09240 IPR017926 Glutamine amidotransferase BER93_RS09240 IPR029062 Class I glutamine amidotransferase-like BER93_RS09245 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA BER93_RS09245 IPR006062 Histidine biosynthesis BER93_RS09245 IPR011060 Ribulose-phosphate binding barrel BER93_RS09245 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase BER93_RS09245 IPR013785 Aldolase-type TIM barrel BER93_RS09250 IPR004651 Histidine biosynthesis, HisF BER93_RS09250 IPR011060 Ribulose-phosphate binding barrel BER93_RS09250 IPR006062 Histidine biosynthesis BER93_RS09250 IPR013785 Aldolase-type TIM barrel BER93_RS09255 IPR023019 Histidine biosynthesis bifunctional protein HisIE BER93_RS09255 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily BER93_RS09255 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase BER93_RS09255 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain BER93_RS09255 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like BER93_RS09280 IPR023214 HAD superfamily BER93_RS09280 IPR036412 HAD-like superfamily BER93_RS09280 IPR023943 Enolase-phosphatase E1 BER93_RS09280 IPR006439 HAD hydrolase, subfamily IA BER93_RS09285 IPR004313 Acireductone dioxygenase ARD family BER93_RS09285 IPR023956 Acireductone dioxygenase ARD, bacteria BER93_RS09285 IPR014710 RmlC-like jelly roll fold BER93_RS09285 IPR011051 RmlC-like cupin domain superfamily BER93_RS09290 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BER93_RS09290 IPR001303 Class II aldolase/adducin N-terminal BER93_RS09290 IPR017714 Methylthioribulose-1-phosphate dehydratase BER93_RS09295 IPR002293 Amino acid/polyamine transporter I BER93_RS09295 IPR004758 Amino acid transporter BER93_RS09300 IPR004758 Amino acid transporter BER93_RS09300 IPR002293 Amino acid/polyamine transporter I BER93_RS09310 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_RS09310 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER93_RS09310 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain BER93_RS09310 IPR036291 NAD(P)-binding domain superfamily BER93_RS09310 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BER93_RS09310 IPR002912 ACT domain BER93_RS09315 IPR016164 FAD-linked oxidase-like, C-terminal BER93_RS09315 IPR036318 FAD-binding, type PCMH-like superfamily BER93_RS09315 IPR016166 FAD-binding domain, PCMH-type BER93_RS09315 IPR004490 Glycolate oxidase subunit GlcD BER93_RS09315 IPR004113 FAD-linked oxidase, C-terminal BER93_RS09315 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BER93_RS09315 IPR006094 FAD linked oxidase, N-terminal BER93_RS09330 IPR013185 Translation elongation factor, KOW-like BER93_RS09330 IPR011897 Translation elongation factor P-like, YeiP BER93_RS09330 IPR020599 Translation elongation factor P/YeiP BER93_RS09330 IPR015365 Elongation factor P, C-terminal BER93_RS09330 IPR001059 Translation elongation factor P/YeiP, central BER93_RS09330 IPR014722 Ribosomal protein L2, domain 2 BER93_RS09330 IPR008991 Translation protein SH3-like domain superfamily BER93_RS09330 IPR013852 Translation elongation factor P/YeiP, conserved site BER93_RS09330 IPR012340 Nucleic acid-binding, OB-fold BER93_RS09335 IPR036291 NAD(P)-binding domain superfamily BER93_RS09335 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS09335 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS09340 IPR000891 Pyruvate carboxyltransferase BER93_RS09340 IPR013785 Aldolase-type TIM barrel BER93_RS09340 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site BER93_RS09345 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site BER93_RS09345 IPR001753 Enoyl-CoA hydratase/isomerase BER93_RS09345 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS09345 IPR014748 Enoyl-CoA hydratase, C-terminal BER93_RS09355 IPR003373 Ferrous iron transport protein B BER93_RS09355 IPR011640 Ferrous iron transport protein B, C-terminal BER93_RS09355 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS09355 IPR006073 GTP binding domain BER93_RS09355 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain BER93_RS09355 IPR030389 FeoB-type guanine nucleotide-binding (G) domain BER93_RS09370 IPR022663 Dihydrodipicolinate reductase, C-terminal BER93_RS09370 IPR036291 NAD(P)-binding domain superfamily BER93_RS09370 IPR023940 Dihydrodipicolinate reductase BER93_RS09370 IPR000846 Dihydrodipicolinate reductase, N-terminal BER93_RS09370 IPR022664 Dihydrodipicolinate reductase, conserved site BER93_RS09375 IPR006274 Carbamoyl-phosphate synthase, small subunit BER93_RS09375 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain BER93_RS09375 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily BER93_RS09375 IPR029062 Class I glutamine amidotransferase-like BER93_RS09375 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain BER93_RS09375 IPR017926 Glutamine amidotransferase BER93_RS09390 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain BER93_RS09390 IPR016185 Pre-ATP-grasp domain superfamily BER93_RS09390 IPR036914 Methylglyoxal synthase-like domain superfamily BER93_RS09390 IPR011607 Methylglyoxal synthase-like domain BER93_RS09390 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain BER93_RS09390 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain BER93_RS09390 IPR006275 Carbamoyl-phosphate synthase, large subunit BER93_RS09390 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain BER93_RS09390 IPR011761 ATP-grasp fold BER93_RS09390 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily BER93_RS09395 IPR028624 Transcription elongation factor GreA/GreB BER93_RS09395 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily BER93_RS09395 IPR023459 Transcription elongation factor GreA/GreB family BER93_RS09395 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal BER93_RS09395 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal BER93_RS09395 IPR018151 Transcription elongation factor, GreA/GreB, conserved site BER93_RS09395 IPR006359 Transcription elongation factor GreA BER93_RS09395 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily BER93_RS09405 IPR004610 Bacterial RecJ exonuclease BER93_RS09405 IPR038763 DHH phosphoesterase superfamily BER93_RS09405 IPR041122 RecJ, OB domain BER93_RS09405 IPR003156 DHHA1 domain BER93_RS09405 IPR001667 DDH domain BER93_RS09410 IPR005139 Peptide chain release factor BER93_RS09410 IPR000352 Peptide chain release factor class I BER93_RS09410 IPR004374 Peptide chain release factor 2 BER93_RS09415 IPR012340 Nucleic acid-binding, OB-fold BER93_RS09415 IPR002313 Lysine-tRNA ligase, class II BER93_RS09415 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal BER93_RS09415 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type BER93_RS09415 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) BER93_RS09415 IPR006195 Aminoacyl-tRNA synthetase, class II BER93_RS09420 IPR003607 HD/PDEase domain BER93_RS09420 IPR011006 CheY-like superfamily BER93_RS09420 IPR037522 HD-GYP domain BER93_RS09420 IPR001789 Signal transduction response regulator, receiver domain BER93_RS09430 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS09430 IPR011006 CheY-like superfamily BER93_RS09430 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS09430 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS09430 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS09430 IPR036641 HPT domain superfamily BER93_RS09430 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS09430 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS09430 IPR001789 Signal transduction response regulator, receiver domain BER93_RS09430 IPR005467 Histidine kinase domain BER93_RS09435 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS09435 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site BER93_RS09435 IPR001753 Enoyl-CoA hydratase/isomerase BER93_RS09435 IPR014748 Enoyl-CoA hydratase, C-terminal BER93_RS09440 IPR025110 AMP-binding enzyme, C-terminal domain BER93_RS09440 IPR000873 AMP-dependent synthetase/ligase BER93_RS09440 IPR042099 AMP-dependent synthetase-like superfamily BER93_RS09440 IPR020845 AMP-binding, conserved site BER93_RS09450 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER93_RS09450 IPR036008 Aconitase, iron-sulfur domain BER93_RS09450 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 BER93_RS09450 IPR018136 Aconitase family, 4Fe-4S cluster binding site BER93_RS09450 IPR006249 Aconitase/Iron-responsive element-binding protein 2 BER93_RS09450 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain BER93_RS09450 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain BER93_RS09465 IPR004406 Aconitase B BER93_RS09465 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 BER93_RS09465 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain BER93_RS09465 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER93_RS09465 IPR018136 Aconitase family, 4Fe-4S cluster binding site BER93_RS09465 IPR036008 Aconitase, iron-sulfur domain BER93_RS09465 IPR015933 Aconitase B, HEAT-like domain BER93_RS09465 IPR036288 Aconitase B, HEAT-like domain superfamily BER93_RS09465 IPR015929 Aconitase B, swivel BER93_RS09465 IPR015932 Aconitase, domain 2 BER93_RS09470 IPR029058 Alpha/Beta hydrolase fold BER93_RS09470 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS09470 IPR019913 Pyrimidine utilisation protein RutD BER93_RS09475 IPR000160 GGDEF domain BER93_RS09475 IPR005330 MHYT domain BER93_RS09475 IPR029787 Nucleotide cyclase BER93_RS09475 IPR001633 EAL domain BER93_RS09475 IPR035919 EAL domain superfamily BER93_RS09480 IPR001789 Signal transduction response regulator, receiver domain BER93_RS09480 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type BER93_RS09480 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase BER93_RS09480 IPR011006 CheY-like superfamily BER93_RS09480 IPR035909 Methylesterase CheB, C-terminal BER93_RS09485 IPR005659 Chemoreceptor glutamine deamidase CheD BER93_RS09485 IPR038592 CheD-like superfamily BER93_RS09485 IPR011324 Cytotoxic necrotizing factor-like, catalytic BER93_RS09490 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS09490 IPR026024 Chemotaxis protein methyltransferase CheR BER93_RS09490 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BER93_RS09490 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily BER93_RS09490 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BER93_RS09490 IPR000780 MCP methyltransferase, CheR-type BER93_RS09500 IPR039315 Chemotaxis protein CheW BER93_RS09500 IPR002545 CheW-like domain BER93_RS09500 IPR036061 CheW-like domain superfamily BER93_RS09510 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding BER93_RS09510 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS09510 IPR003660 HAMP domain BER93_RS09510 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site BER93_RS09510 IPR004090 Chemotaxis methyl-accepting receptor BER93_RS09510 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BER93_RS09520 IPR003660 HAMP domain BER93_RS09520 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site BER93_RS09520 IPR004090 Chemotaxis methyl-accepting receptor BER93_RS09520 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BER93_RS09520 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS09520 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding BER93_RS09525 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding BER93_RS09525 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS09525 IPR004090 Chemotaxis methyl-accepting receptor BER93_RS09525 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site BER93_RS09525 IPR003660 HAMP domain BER93_RS09525 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BER93_RS09535 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BER93_RS09535 IPR004090 Chemotaxis methyl-accepting receptor BER93_RS09535 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site BER93_RS09535 IPR003660 HAMP domain BER93_RS09535 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS09535 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding BER93_RS09560 IPR004105 Histidine kinase CheA-like, homodimeric domain BER93_RS09560 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily BER93_RS09560 IPR036641 HPT domain superfamily BER93_RS09560 IPR002545 CheW-like domain BER93_RS09560 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS09560 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS09560 IPR005467 Histidine kinase domain BER93_RS09560 IPR035891 CheY-binding domain of CheA BER93_RS09560 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS09560 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS09560 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS09560 IPR036061 CheW-like domain superfamily BER93_RS09560 IPR015162 CheY binding BER93_RS09565 IPR011006 CheY-like superfamily BER93_RS09565 IPR001789 Signal transduction response regulator, receiver domain BER93_RS09575 IPR036061 CheW-like domain superfamily BER93_RS09575 IPR039315 Chemotaxis protein CheW BER93_RS09575 IPR002545 CheW-like domain BER93_RS09580 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS09580 IPR025669 AAA domain BER93_RS09585 IPR036737 OmpA-like domain superfamily BER93_RS09585 IPR006665 OmpA-like domain BER93_RS09585 IPR025713 Motility protein B, N-terminal domain BER93_RS09590 IPR002898 MotA/TolQ/ExbB proton channel BER93_RS09590 IPR000540 Flagellar motor protein MotA, conserved site BER93_RS09595 IPR008490 Transposase InsH, N-terminal BER93_RS09705 IPR017726 Fe/S biogenesis protein NfuA BER93_RS09705 IPR034904 Fe-S cluster assembly domain superfamily BER93_RS09705 IPR035903 HesB-like domain superfamily BER93_RS09705 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal BER93_RS09710 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily BER93_RS09710 IPR001533 Pterin 4 alpha carbinolamine dehydratase BER93_RS09720 IPR002514 Transposase IS3/IS911family BER93_RS09720 IPR009057 Homeobox-like domain superfamily BER93_RS09725 IPR001584 Integrase, catalytic core BER93_RS09725 IPR036397 Ribonuclease H superfamily BER93_RS09725 IPR012337 Ribonuclease H-like superfamily BER93_RS09725 IPR025948 HTH-like domain BER93_RS09730 IPR025948 HTH-like domain BER93_RS09730 IPR036397 Ribonuclease H superfamily BER93_RS09730 IPR012337 Ribonuclease H-like superfamily BER93_RS09730 IPR001584 Integrase, catalytic core BER93_RS09735 IPR003689 Zinc/iron permease BER93_RS09735 IPR023498 Zinc transporter ZupT BER93_RS09750 IPR036986 RNA-binding S4 domain superfamily BER93_RS09750 IPR002942 RNA-binding S4 domain BER93_RS09750 IPR006145 Pseudouridine synthase, RsuA/RluA BER93_RS09750 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site BER93_RS09750 IPR006225 Pseudouridine synthase, RluC/RluD BER93_RS09750 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS09755 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G BER93_RS09755 IPR028878 Ribonuclease E BER93_RS09755 IPR003029 S1 domain BER93_RS09755 IPR022967 RNA-binding domain, S1 BER93_RS09755 IPR004659 Ribonuclease E/G BER93_RS09755 IPR012340 Nucleic acid-binding, OB-fold BER93_RS09755 IPR021968 Polyribonucleotide phosphorylase C-terminal BER93_RS09760 IPR001789 Signal transduction response regulator, receiver domain BER93_RS09760 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS09760 IPR011006 CheY-like superfamily BER93_RS09760 IPR000792 Transcription regulator LuxR, C-terminal BER93_RS09765 IPR040503 UPF0176, acylphosphatase-like domain BER93_RS09765 IPR001763 Rhodanese-like domain BER93_RS09765 IPR036873 Rhodanese-like domain superfamily BER93_RS09765 IPR020936 Uncharacterised protein family UPF0176 BER93_RS09775 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BER93_RS09785 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal BER93_RS09785 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal BER93_RS09785 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation BER93_RS09785 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily BER93_RS09785 IPR017476 UDP-glucose/GDP-mannose dehydrogenase BER93_RS09785 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS09785 IPR036291 NAD(P)-binding domain superfamily BER93_RS09785 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase BER93_RS09795 IPR008490 Transposase InsH, N-terminal BER93_RS09795 IPR002559 Transposase, IS4-like BER93_RS09805 IPR002514 Transposase IS3/IS911family BER93_RS09805 IPR009057 Homeobox-like domain superfamily BER93_RS09810 IPR012337 Ribonuclease H-like superfamily BER93_RS09810 IPR036397 Ribonuclease H superfamily BER93_RS09810 IPR001584 Integrase, catalytic core BER93_RS09810 IPR025948 HTH-like domain BER93_RS09815 IPR012337 Ribonuclease H-like superfamily BER93_RS09815 IPR036397 Ribonuclease H superfamily BER93_RS09815 IPR025948 HTH-like domain BER93_RS09815 IPR001584 Integrase, catalytic core BER93_RS09845 IPR006531 Gp5 N-terminal BER93_RS09845 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS09845 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS09845 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS09855 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS09855 IPR041546 ClpA/ClpB, AAA lid domain BER93_RS09855 IPR018368 ClpA/B, conserved site 1 BER93_RS09855 IPR001270 ClpA/B family BER93_RS09855 IPR036628 Clp, N-terminal domain superfamily BER93_RS09855 IPR019489 Clp ATPase, C-terminal BER93_RS09855 IPR017729 Type VI secretion system, ATPase ClpV1 BER93_RS09855 IPR003959 ATPase, AAA-type, core BER93_RS09855 IPR003593 AAA+ ATPase domain BER93_RS09855 IPR004176 Clp, N-terminal BER93_RS09865 IPR010272 Type VI secretion system, TssF-like BER93_RS09880 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath BER93_RS09885 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BER93_RS09910 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS09910 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_RS09910 IPR006531 Gp5 N-terminal BER93_RS09910 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_RS09910 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS09910 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS09935 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS09935 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS09935 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS09935 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_RS09935 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_RS09935 IPR006531 Gp5 N-terminal BER93_RS09975 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_RS09975 IPR006531 Gp5 N-terminal BER93_RS09975 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_RS09975 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS09975 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS09975 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS09980 IPR009057 Homeobox-like domain superfamily BER93_RS09980 IPR002514 Transposase IS3/IS911family BER93_RS10000 IPR005546 Autotransporter beta-domain BER93_RS10000 IPR013425 Autotransporter-associated beta strand repeat BER93_RS10000 IPR006315 Outer membrane autotransporter barrel BER93_RS10000 IPR013425 Autotransporter-associated beta strand repeat BER93_RS10000 IPR011050 Pectin lyase fold/virulence factor BER93_RS10000 IPR005546 Autotransporter beta-domain BER93_RS10000 IPR036709 Autotransporter beta-domain superfamily BER93_RS10000 IPR006315 Outer membrane autotransporter barrel BER93_RS10000 IPR012332 P22 tailspike-like, C-terminal domain superfamily BER93_RS10000 IPR012332 P22 tailspike-like, C-terminal domain superfamily BER93_RS10000 IPR011050 Pectin lyase fold/virulence factor BER93_RS10000 IPR036709 Autotransporter beta-domain superfamily BER93_RS10015 IPR009078 Ferritin-like superfamily BER93_RS10015 IPR012347 Ferritin-like BER93_RS10015 IPR010287 Domain of unknown function DUF892 BER93_RS10030 IPR008490 Transposase InsH, N-terminal BER93_RS10030 IPR002559 Transposase, IS4-like BER93_RS10040 IPR014776 Tetrapyrrole methylase, subdomain 2 BER93_RS10040 IPR000878 Tetrapyrrole methylase BER93_RS10040 IPR006367 Sirohaem synthase, N-terminal BER93_RS10040 IPR014777 Tetrapyrrole methylase, subdomain 1 BER93_RS10040 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site BER93_RS10040 IPR036291 NAD(P)-binding domain superfamily BER93_RS10040 IPR012409 Sirohaem synthase BER93_RS10040 IPR028281 Siroheme synthase, central domain BER93_RS10040 IPR019478 Sirohaem synthase, dimerisation domain BER93_RS10040 IPR006366 Uroporphyrin-III C-methyltransferase BER93_RS10040 IPR035996 Tetrapyrrole methylase superfamily BER93_RS10050 IPR025877 MobA-like NTP transferase BER93_RS10050 IPR013482 Molybdenum cofactor guanylyltransferase BER93_RS10050 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS10055 IPR036688 MoeA, C-terminal, domain IV superfamily BER93_RS10055 IPR036135 MoeA, N-terminal and linker domain superfamily BER93_RS10055 IPR005111 MoeA, C-terminal, domain IV BER93_RS10055 IPR008284 Molybdenum cofactor biosynthesis, conserved site BER93_RS10055 IPR001453 MoaB/Mog domain BER93_RS10055 IPR036425 MoaB/Mog-like domain superfamily BER93_RS10055 IPR005110 MoeA, N-terminal and linker domain BER93_RS10055 IPR038987 Molybdopterin biosynthesis protein MoeA-like BER93_RS10075 IPR000594 THIF-type NAD/FAD binding fold BER93_RS10075 IPR035985 Ubiquitin-activating enzyme BER93_RS10080 IPR038987 Molybdopterin biosynthesis protein MoeA-like BER93_RS10080 IPR005110 MoeA, N-terminal and linker domain BER93_RS10080 IPR008284 Molybdenum cofactor biosynthesis, conserved site BER93_RS10080 IPR001453 MoaB/Mog domain BER93_RS10080 IPR036425 MoaB/Mog-like domain superfamily BER93_RS10080 IPR005111 MoeA, C-terminal, domain IV BER93_RS10080 IPR036688 MoeA, C-terminal, domain IV superfamily BER93_RS10080 IPR036135 MoeA, N-terminal and linker domain superfamily BER93_RS10085 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10085 IPR005225 Small GTP-binding protein domain BER93_RS10085 IPR015946 K homology domain-like, alpha/beta BER93_RS10085 IPR003593 AAA+ ATPase domain BER93_RS10085 IPR006073 GTP binding domain BER93_RS10085 IPR016484 GTP-binding protein EngA BER93_RS10085 IPR031166 EngA-type guanine nucleotide-binding (G) domain BER93_RS10085 IPR032859 GTPase Der, C-terminal KH-domain-like BER93_RS10090 IPR015943 WD40/YVTN repeat-like-containing domain superfamily BER93_RS10090 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BER93_RS10090 IPR002372 Pyrrolo-quinoline quinone repeat BER93_RS10090 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER93_RS10090 IPR017687 Outer membrane protein assembly factor BamB BER93_RS10110 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr BER93_RS10110 IPR027492 Dual-specificity RNA methyltransferase RlmN BER93_RS10110 IPR040072 Methyltransferase (Class A) BER93_RS10110 IPR013785 Aldolase-type TIM barrel BER93_RS10110 IPR007197 Radical SAM BER93_RS10115 IPR001564 Nucleoside diphosphate kinase BER93_RS10115 IPR023005 Nucleoside diphosphate kinase, active site BER93_RS10115 IPR034907 Nucleoside diphosphate kinase-like domain BER93_RS10115 IPR036850 Nucleoside diphosphate kinase-like domain superfamily BER93_RS10125 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding BER93_RS10125 IPR036291 NAD(P)-binding domain superfamily BER93_RS10125 IPR001753 Enoyl-CoA hydratase/isomerase BER93_RS10125 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS10125 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal BER93_RS10125 IPR013328 6-phosphogluconate dehydrogenase, domain 2 BER93_RS10125 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS10130 IPR020617 Thiolase, C-terminal BER93_RS10130 IPR020613 Thiolase, conserved site BER93_RS10130 IPR016039 Thiolase-like BER93_RS10130 IPR020615 Thiolase, acyl-enzyme intermediate active site BER93_RS10130 IPR020610 Thiolase, active site BER93_RS10130 IPR020616 Thiolase, N-terminal BER93_RS10130 IPR002155 Thiolase BER93_RS10135 IPR014743 Chloride channel, core BER93_RS10135 IPR001807 Chloride channel, voltage gated BER93_RS10140 IPR008490 Transposase InsH, N-terminal BER93_RS10145 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal BER93_RS10145 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10145 IPR032423 AAA C-terminal domain BER93_RS10145 IPR003593 AAA+ ATPase domain BER93_RS10145 IPR021886 MgsA AAA+ ATPase C-terminal BER93_RS10145 IPR003959 ATPase, AAA-type, core BER93_RS10150 IPR029046 Lipoprotein localisation LolA/LolB/LppX BER93_RS10150 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria BER93_RS10150 IPR004564 Outer membrane lipoprotein carrier protein LolA-like BER93_RS10160 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS10160 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS10160 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10160 IPR018541 FtsK gamma domain BER93_RS10160 IPR002543 FtsK domain BER93_RS10160 IPR003593 AAA+ ATPase domain BER93_RS10160 IPR041027 FtsK alpha domain BER93_RS10160 IPR025199 DNA translocase FtsK, 4TM region BER93_RS10165 IPR005982 Thioredoxin reductase BER93_RS10165 IPR023753 FAD/NAD(P)-binding domain BER93_RS10165 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS10165 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site BER93_RS10175 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal BER93_RS10175 IPR016181 Acyl-CoA N-acyltransferase BER93_RS10175 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase BER93_RS10180 IPR004368 Translation initiation factor IF-1 BER93_RS10180 IPR012340 Nucleic acid-binding, OB-fold BER93_RS10180 IPR006196 RNA-binding domain, S1, IF1 type BER93_RS10180 IPR022967 RNA-binding domain, S1 BER93_RS10185 IPR003959 ATPase, AAA-type, core BER93_RS10185 IPR004176 Clp, N-terminal BER93_RS10185 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA BER93_RS10185 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10185 IPR019489 Clp ATPase, C-terminal BER93_RS10185 IPR036628 Clp, N-terminal domain superfamily BER93_RS10185 IPR041546 ClpA/ClpB, AAA lid domain BER93_RS10185 IPR018368 ClpA/B, conserved site 1 BER93_RS10185 IPR001270 ClpA/B family BER93_RS10185 IPR003593 AAA+ ATPase domain BER93_RS10185 IPR028299 ClpA/B, conserved site 2 BER93_RS10190 IPR003769 Adaptor protein ClpS, core BER93_RS10190 IPR022935 ATP-dependent Clp protease adaptor protein ClpS BER93_RS10190 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BER93_RS10195 IPR020084 NUDIX hydrolase, conserved site BER93_RS10195 IPR000086 NUDIX hydrolase domain BER93_RS10195 IPR020476 NUDIX hydrolase BER93_RS10195 IPR033713 Phosphatase NudJ BER93_RS10195 IPR015797 NUDIX hydrolase-like domain superfamily BER93_RS10200 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS10200 IPR023382 Adenine nucleotide alpha hydrolase-like domains BER93_RS10200 IPR004506 tRNA-specific 2-thiouridylase BER93_RS10205 IPR035932 HflD-like superfamily BER93_RS10205 IPR007451 High frequency lysogenization protein HflD BER93_RS10210 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain BER93_RS10210 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS10210 IPR004090 Chemotaxis methyl-accepting receptor BER93_RS10210 IPR000727 Target SNARE coiled-coil homology domain BER93_RS10210 IPR003660 HAMP domain BER93_RS10230 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain BER93_RS10230 IPR003018 GAF domain BER93_RS10230 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS10230 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS10230 IPR029016 GAF-like domain superfamily BER93_RS10230 IPR005467 Histidine kinase domain BER93_RS10235 IPR001633 EAL domain BER93_RS10235 IPR035919 EAL domain superfamily BER93_RS10235 IPR000160 GGDEF domain BER93_RS10235 IPR029787 Nucleotide cyclase BER93_RS10235 IPR005330 MHYT domain BER93_RS10240 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS10240 IPR000014 PAS domain BER93_RS10240 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS10240 IPR005467 Histidine kinase domain BER93_RS10240 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS10240 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS10240 IPR013767 PAS fold BER93_RS10240 IPR035965 PAS domain superfamily BER93_RS10240 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS10260 IPR036061 CheW-like domain superfamily BER93_RS10260 IPR002545 CheW-like domain BER93_RS10260 IPR001789 Signal transduction response regulator, receiver domain BER93_RS10260 IPR024181 Chemotaxis response regulator CheV BER93_RS10260 IPR011006 CheY-like superfamily BER93_RS10265 IPR006300 Flagellar basal-body rod protein FlgB BER93_RS10265 IPR019776 Flagellar basal body rod protein, conserved site BER93_RS10265 IPR001444 Flagellar basal body rod protein, N-terminal BER93_RS10270 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_RS10270 IPR001444 Flagellar basal body rod protein, N-terminal BER93_RS10270 IPR006299 Flagellar basal-body rod protein FlgC BER93_RS10270 IPR019776 Flagellar basal body rod protein, conserved site BER93_RS10275 IPR005648 Flagellar hook capping protein BER93_RS10280 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_RS10280 IPR019776 Flagellar basal body rod protein, conserved site BER93_RS10280 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BER93_RS10280 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BER93_RS10280 IPR001444 Flagellar basal body rod protein, N-terminal BER93_RS10280 IPR037058 Flagellar hook protein FlgE superfamily BER93_RS10280 IPR011491 Flagellar hook protein FlgE BER93_RS10285 IPR019776 Flagellar basal body rod protein, conserved site BER93_RS10285 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BER93_RS10285 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_RS10285 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BER93_RS10285 IPR001444 Flagellar basal body rod protein, N-terminal BER93_RS10290 IPR019776 Flagellar basal body rod protein, conserved site BER93_RS10290 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BER93_RS10290 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_RS10290 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BER93_RS10290 IPR001444 Flagellar basal body rod protein, N-terminal BER93_RS10290 IPR012834 Flagellar basal-body rod FlgG BER93_RS10295 IPR000527 Flagellar L-ring protein BER93_RS10300 IPR001782 Flagellar P-ring protein BER93_RS10305 IPR023346 Lysozyme-like domain superfamily BER93_RS10305 IPR019301 Flagellar protein FlgJ, N-terminal BER93_RS10305 IPR013377 Peptidoglycan hydrolase FlgJ BER93_RS10305 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain BER93_RS10310 IPR002371 Flagellar hook-associated protein 1 BER93_RS10310 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_RS10310 IPR010810 Flagellin hook, IN motif BER93_RS10315 IPR001029 Flagellin, D0/D1 domain BER93_RS10315 IPR013384 Flagellar hook-associated protein 3 BER93_RS10320 IPR001492 Flagellin BER93_RS10320 IPR001029 Flagellin, D0/D1 domain BER93_RS10325 IPR003481 Flagellar hook-associated protein 2, N-terminal BER93_RS10325 IPR010809 Flagellar hook-associated protein 2, C-terminal BER93_RS10325 IPR040026 Flagellar hook-associated protein 2 BER93_RS10325 IPR010810 Flagellin hook, IN motif BER93_RS10330 IPR003713 Flagellar protein FliS BER93_RS10330 IPR036584 Flagellar protein FliS superfamily BER93_RS10345 IPR011006 CheY-like superfamily BER93_RS10345 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS10345 IPR001789 Signal transduction response regulator, receiver domain BER93_RS10345 IPR000792 Transcription regulator LuxR, C-terminal BER93_RS10350 IPR007634 RNA polymerase sigma factor 54, DNA-binding BER93_RS10350 IPR000394 RNA polymerase sigma factor 54 BER93_RS10350 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily BER93_RS10350 IPR007046 RNA polymerase sigma factor 54, core-binding domain BER93_RS10355 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase BER93_RS10355 IPR035909 Methylesterase CheB, C-terminal BER93_RS10355 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type BER93_RS10355 IPR001789 Signal transduction response regulator, receiver domain BER93_RS10355 IPR011006 CheY-like superfamily BER93_RS10360 IPR025944 Sigma-54 interaction domain, conserved site BER93_RS10360 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_RS10360 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_RS10360 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10360 IPR002197 DNA binding HTH domain, Fis-type BER93_RS10360 IPR009057 Homeobox-like domain superfamily BER93_RS10360 IPR010518 Flagellar regulatory FleQ BER93_RS10360 IPR011006 CheY-like superfamily BER93_RS10360 IPR003593 AAA+ ATPase domain BER93_RS10360 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER93_RS10370 IPR001173 Glycosyltransferase 2-like BER93_RS10370 IPR001296 Glycosyl transferase, family 1 BER93_RS10370 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS10380 IPR001624 Flagellar hook-basal body complex protein FliE BER93_RS10385 IPR006182 Secretory protein YscJ/FliF BER93_RS10385 IPR000067 Flagellar M-ring protein FliF BER93_RS10385 IPR013556 Flagellar M-ring C-terminal BER93_RS10390 IPR011002 Flagellar motor switch protein FliG, alpha-helical BER93_RS10390 IPR032779 Flagellar motor switch protein FliG, middle domain BER93_RS10390 IPR023087 Flagellar motor switch protein FliG, C-terminal BER93_RS10390 IPR028263 Flagellar motor switch protein FliG, N-terminal domain BER93_RS10390 IPR000090 Flagellar motor switch protein FliG BER93_RS10400 IPR005714 ATPase, type III secretion system, FliI/YscN BER93_RS10400 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10400 IPR040627 T3SS EscN ATPase, C-terminal BER93_RS10400 IPR003593 AAA+ ATPase domain BER93_RS10400 IPR020005 Flagellar export ATPase FliI, clade 1 BER93_RS10400 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site BER93_RS10400 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_RS10400 IPR032463 ATPase, type III secretion system, FliI BER93_RS10420 IPR001543 Surface presentation of antigen (SpoA) BER93_RS10420 IPR036429 SpoA-like superfamily BER93_RS10420 IPR028976 CheC-like superfamily BER93_RS10420 IPR001689 Flagellar motor switch protein FliM BER93_RS10425 IPR036429 SpoA-like superfamily BER93_RS10425 IPR012826 Flagellar motor switch FliN BER93_RS10425 IPR001543 Surface presentation of antigen (SpoA) BER93_RS10425 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb BER93_RS10430 IPR022781 Flagellar biosynthesis protein, FliO BER93_RS10435 IPR005837 Flagellar transport protein FliP BER93_RS10435 IPR005838 Type III secretion system inner membrane P protein BER93_RS10440 IPR002191 Bacterial export protein family 3 BER93_RS10440 IPR006305 Flagellar biosynthesis protein FliQ BER93_RS10445 IPR006303 Flagellar biosynthesis protein FliR BER93_RS10445 IPR002010 Type III secretion system inner membrane R protein BER93_RS10455 IPR000014 PAS domain BER93_RS10455 IPR029787 Nucleotide cyclase BER93_RS10455 IPR005330 MHYT domain BER93_RS10455 IPR000160 GGDEF domain BER93_RS10455 IPR035965 PAS domain superfamily BER93_RS10455 IPR035919 EAL domain superfamily BER93_RS10455 IPR001633 EAL domain BER93_RS10460 IPR029787 Nucleotide cyclase BER93_RS10460 IPR000160 GGDEF domain BER93_RS10465 IPR006136 Flagellar biosynthetic protein FlhB BER93_RS10465 IPR029025 Type III secretion system substrate exporter, C-terminal BER93_RS10465 IPR006135 Type III secretion system substrate exporter BER93_RS10470 IPR006301 Flagellar biosynthesis protein FlhA BER93_RS10470 IPR042194 FHIPEP, domain 1 BER93_RS10470 IPR001712 Type III secretion system FHIPEP BER93_RS10470 IPR042193 FHIPEP, domain 3 BER93_RS10470 IPR042196 FHIPEP, domain 4 BER93_RS10470 IPR025505 FHIPEP conserved site BER93_RS10475 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain BER93_RS10475 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10475 IPR020006 Flagellar biosynthesis protein FlhF BER93_RS10475 IPR003593 AAA+ ATPase domain BER93_RS10480 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10480 IPR025501 ATP binding protein MinD BER93_RS10480 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 BER93_RS10485 IPR000943 RNA polymerase sigma-70 BER93_RS10485 IPR014284 RNA polymerase sigma-70 like domain BER93_RS10485 IPR012845 RNA polymerase sigma factor, FliA/WhiG BER93_RS10485 IPR007624 RNA polymerase sigma-70 region 3 BER93_RS10485 IPR007630 RNA polymerase sigma-70 region 4 BER93_RS10485 IPR013325 RNA polymerase sigma factor, region 2 BER93_RS10485 IPR013324 RNA polymerase sigma factor, region 3/4-like BER93_RS10485 IPR028617 RNA polymerase sigma factor FliA BER93_RS10485 IPR007627 RNA polymerase sigma-70 region 2 BER93_RS10490 IPR001789 Signal transduction response regulator, receiver domain BER93_RS10490 IPR011006 CheY-like superfamily BER93_RS10495 IPR007439 Chemotaxis phosphatase, CheZ BER93_RS10500 IPR036641 HPT domain superfamily BER93_RS10500 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS10500 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS10500 IPR001789 Signal transduction response regulator, receiver domain BER93_RS10500 IPR004105 Histidine kinase CheA-like, homodimeric domain BER93_RS10500 IPR005467 Histidine kinase domain BER93_RS10500 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS10500 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily BER93_RS10500 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS10500 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS10500 IPR011006 CheY-like superfamily BER93_RS10500 IPR002545 CheW-like domain BER93_RS10500 IPR036061 CheW-like domain superfamily BER93_RS10555 IPR002559 Transposase, IS4-like BER93_RS10565 IPR036709 Autotransporter beta-domain superfamily BER93_RS10565 IPR000209 Peptidase S8/S53 domain BER93_RS10565 IPR034061 Autotransporter serine protease peptidase domain BER93_RS10565 IPR036852 Peptidase S8/S53 domain superfamily BER93_RS10565 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_RS10565 IPR015500 Peptidase S8, subtilisin-related BER93_RS10565 IPR005546 Autotransporter beta-domain BER93_RS10570 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS10570 IPR001036 Acriflavin resistance protein BER93_RS10570 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA BER93_RS10580 IPR009057 Homeobox-like domain superfamily BER93_RS10580 IPR002514 Transposase IS3/IS911family BER93_RS10595 IPR002559 Transposase, IS4-like BER93_RS10605 IPR029144 Threonine synthase, N-terminal BER93_RS10605 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_RS10605 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site BER93_RS10605 IPR001926 Pyridoxal-phosphate dependent enzyme BER93_RS10605 IPR004450 Threonine synthase-like BER93_RS10605 IPR037158 Threonine synthase, N-terminal domain superfamily BER93_RS10615 IPR011118 Tannase/feruloyl esterase BER93_RS10615 IPR029058 Alpha/Beta hydrolase fold BER93_RS10620 IPR008490 Transposase InsH, N-terminal BER93_RS10625 IPR013750 GHMP kinase, C-terminal domain BER93_RS10625 IPR000870 Homoserine kinase BER93_RS10625 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS10625 IPR036554 GHMP kinase, C-terminal domain superfamily BER93_RS10625 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS10625 IPR006204 GHMP kinase N-terminal domain BER93_RS10630 IPR019811 Homoserine dehydrogenase, conserved site BER93_RS10630 IPR001342 Homoserine dehydrogenase, catalytic BER93_RS10630 IPR036291 NAD(P)-binding domain superfamily BER93_RS10630 IPR027795 CASTOR, ACT domain BER93_RS10630 IPR018042 Aspartate kinase, conserved site BER93_RS10630 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I BER93_RS10630 IPR036393 Acetylglutamate kinase-like superfamily BER93_RS10630 IPR002912 ACT domain BER93_RS10630 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain BER93_RS10630 IPR001048 Aspartate/glutamate/uridylate kinase BER93_RS10630 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding BER93_RS10630 IPR001341 Aspartate kinase BER93_RS10635 IPR038330 TspO/MBR-related superfamily BER93_RS10635 IPR004307 TspO/MBR-related protein BER93_RS10640 IPR002514 Transposase IS3/IS911family BER93_RS10640 IPR009057 Homeobox-like domain superfamily BER93_RS10650 IPR002559 Transposase, IS4-like BER93_RS10650 IPR008490 Transposase InsH, N-terminal BER93_RS10670 IPR041679 DNA2/NAM7 helicase-like, AAA domain BER93_RS10670 IPR041677 DNA2/NAM7 helicase, AAA domain BER93_RS10670 IPR025103 Protein of unknown function DUF4011 BER93_RS10670 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10680 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS10680 IPR025103 Protein of unknown function DUF4011 BER93_RS10680 IPR041679 DNA2/NAM7 helicase-like, AAA domain BER93_RS10680 IPR041677 DNA2/NAM7 helicase, AAA domain BER93_RS10685 IPR012337 Ribonuclease H-like superfamily BER93_RS10685 IPR001584 Integrase, catalytic core BER93_RS10685 IPR025948 HTH-like domain BER93_RS10685 IPR036397 Ribonuclease H superfamily BER93_RS10690 IPR009057 Homeobox-like domain superfamily BER93_RS10690 IPR002514 Transposase IS3/IS911family BER93_RS10695 IPR015590 Aldehyde dehydrogenase domain BER93_RS10695 IPR016161 Aldehyde/histidinol dehydrogenase BER93_RS10695 IPR029510 Aldehyde dehydrogenase, glutamic acid active site BER93_RS10695 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_RS10695 IPR016160 Aldehyde dehydrogenase, cysteine active site BER93_RS10695 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_RS10710 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 BER93_RS10710 IPR005719 Dihydroorotate dehydrogenase, class 2 BER93_RS10710 IPR001295 Dihydroorotate dehydrogenase, conserved site BER93_RS10710 IPR005720 Dihydroorotate dehydrogenase domain BER93_RS10710 IPR013785 Aldolase-type TIM barrel BER93_RS10715 IPR006094 FAD linked oxidase, N-terminal BER93_RS10715 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal BER93_RS10715 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily BER93_RS10715 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase BER93_RS10715 IPR016167 FAD-binding, type PCMH, subdomain 1 BER93_RS10715 IPR036318 FAD-binding, type PCMH-like superfamily BER93_RS10715 IPR016166 FAD-binding domain, PCMH-type BER93_RS10715 IPR016169 FAD-binding, type PCMH, subdomain 2 BER93_RS10725 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BER93_RS10725 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER93_RS10730 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial BER93_RS10730 IPR011005 Dihydropteroate synthase-like BER93_RS10730 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type BER93_RS10740 IPR001789 Signal transduction response regulator, receiver domain BER93_RS10740 IPR002197 DNA binding HTH domain, Fis-type BER93_RS10740 IPR011006 CheY-like superfamily BER93_RS10750 IPR001633 EAL domain BER93_RS10750 IPR035919 EAL domain superfamily BER93_RS10750 IPR013515 Phytochrome, central region BER93_RS10750 IPR001294 Phytochrome BER93_RS10750 IPR029787 Nucleotide cyclase BER93_RS10750 IPR000160 GGDEF domain BER93_RS10750 IPR016132 Phytochrome chromophore attachment domain BER93_RS10750 IPR029016 GAF-like domain superfamily BER93_RS10750 IPR003018 GAF domain BER93_RS10770 IPR002559 Transposase, IS4-like BER93_RS10770 IPR008490 Transposase InsH, N-terminal BER93_RS10790 IPR001734 Sodium/solute symporter BER93_RS10790 IPR018212 Sodium/solute symporter, conserved site BER93_RS10790 IPR038377 Sodium/glucose symporter superfamily BER93_RS10795 IPR026891 Fibronectin type III-like domain BER93_RS10795 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily BER93_RS10795 IPR001764 Glycoside hydrolase, family 3, N-terminal BER93_RS10795 IPR002772 Glycoside hydrolase family 3 C-terminal domain BER93_RS10795 IPR037524 PA14/GLEYA domain BER93_RS10795 IPR017853 Glycoside hydrolase superfamily BER93_RS10795 IPR013783 Immunoglobulin-like fold BER93_RS10795 IPR011658 PA14 domain BER93_RS10795 IPR019800 Glycoside hydrolase, family 3, active site BER93_RS10795 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily BER93_RS10795 IPR008979 Galactose-binding-like domain superfamily BER93_RS10840 IPR035482 Phosphoglucose isomerase, SIS domain 2 BER93_RS10840 IPR035476 Phosphoglucose isomerase, SIS domain 1 BER93_RS10840 IPR018189 Phosphoglucose isomerase, conserved site BER93_RS10840 IPR023096 Phosphoglucose isomerase, C-terminal BER93_RS10840 IPR001672 Phosphoglucose isomerase (PGI) BER93_RS10845 IPR003190 Aspartate decarboxylase BER93_RS10845 IPR009010 Aspartate decarboxylase-like domain superfamily BER93_RS10850 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain BER93_RS10850 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS10850 IPR003721 Pantoate-beta-alanine ligase BER93_RS10855 IPR003700 Ketopantoate hydroxymethyltransferase BER93_RS10855 IPR040442 Pyruvate kinase-like domain superfamily BER93_RS10855 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily BER93_RS10860 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK BER93_RS10860 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily BER93_RS10865 IPR025866 Polymerase A arginine-rich C-terminal domain BER93_RS10865 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain BER93_RS10865 IPR010206 Poly(A) polymerase I BER93_RS10865 IPR002646 Poly A polymerase, head domain BER93_RS10875 IPR022838 GTP cyclohydrolase FolE2 BER93_RS10875 IPR003801 GTP cyclohydrolase FolE2/MptA BER93_RS10880 IPR003663 Sugar/inositol transporter BER93_RS10880 IPR005828 Major facilitator, sugar transporter-like BER93_RS10880 IPR020846 Major facilitator superfamily domain BER93_RS10880 IPR005829 Sugar transporter, conserved site BER93_RS10880 IPR036259 MFS transporter superfamily BER93_RS10885 IPR013452 Xylose isomerase, bacterial-type BER93_RS10885 IPR036237 Xylose isomerase-like superfamily BER93_RS10885 IPR001998 Xylose isomerase BER93_RS10890 IPR000577 Carbohydrate kinase, FGGY BER93_RS10890 IPR018485 Carbohydrate kinase, FGGY, C-terminal BER93_RS10890 IPR018483 Carbohydrate kinase, FGGY, conserved site BER93_RS10890 IPR018484 Carbohydrate kinase, FGGY, N-terminal BER93_RS10890 IPR006000 Xylulokinase BER93_RS10900 IPR033403 Domain of unknown function DUF5110 BER93_RS10900 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 BER93_RS10900 IPR037524 PA14/GLEYA domain BER93_RS10900 IPR017853 Glycoside hydrolase superfamily BER93_RS10900 IPR013780 Glycosyl hydrolase, all-beta BER93_RS10900 IPR000322 Glycoside hydrolase family 31 BER93_RS10900 IPR011013 Galactose mutarotase-like domain superfamily BER93_RS10920 IPR008490 Transposase InsH, N-terminal BER93_RS10945 IPR005119 LysR, substrate-binding BER93_RS10945 IPR037405 HTH-type transcriptional regulator GbpR, PBP2 domain BER93_RS10945 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS10945 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS10945 IPR000847 Transcription regulator HTH, LysR BER93_RS10950 IPR000887 KDPG/KHG aldolase BER93_RS10950 IPR013785 Aldolase-type TIM barrel BER93_RS10955 IPR036849 Enolase-like, C-terminal domain superfamily BER93_RS10955 IPR029017 Enolase-like, N-terminal BER93_RS10955 IPR029065 Enolase C-terminal domain-like BER93_RS10955 IPR023592 D-galactonate dehydratase BER93_RS10955 IPR034593 Mandelate racemase-like BER93_RS10955 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site BER93_RS10955 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BER93_RS10955 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BER93_RS10960 IPR013658 SMP-30/Gluconolactonase/LRE-like region BER93_RS10960 IPR005511 Senescence marker protein-30 (SMP-30) BER93_RS10960 IPR011042 Six-bladed beta-propeller, TolB-like BER93_RS10965 IPR042258 2-keto-3-deoxy-galactonokinase, N-terminal BER93_RS10965 IPR007729 2-keto-3-deoxy-galactonokinase BER93_RS10965 IPR042257 2-keto-3-deoxy-galactonokinase, C-terminal domain BER93_RS10970 IPR022569 Ferredoxin, C-terminal BER93_RS10970 IPR000813 7Fe ferredoxin BER93_RS10970 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_RS10970 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_RS10980 IPR013785 Aldolase-type TIM barrel BER93_RS10980 IPR020624 Schiff base-forming aldolase, conserved site BER93_RS10980 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA BER93_RS10980 IPR002220 DapA-like BER93_RS10980 IPR020625 Schiff base-forming aldolase, active site BER93_RS10995 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant BER93_RS10995 IPR036249 Thioredoxin-like superfamily BER93_RS10995 IPR013766 Thioredoxin domain BER93_RS11000 IPR002716 PIN domain BER93_RS11000 IPR003714 PhoH-like protein BER93_RS11000 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11000 IPR029060 PIN-like domain superfamily BER93_RS11010 IPR029056 Ribokinase-like BER93_RS11010 IPR036206 Thiamin phosphate synthase superfamily BER93_RS11010 IPR022998 Thiamine phosphate synthase/TenI BER93_RS11010 IPR034291 Thiamine phosphate synthase BER93_RS11010 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase BER93_RS11010 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase BER93_RS11010 IPR013785 Aldolase-type TIM barrel BER93_RS11025 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS11025 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS11025 IPR000847 Transcription regulator HTH, LysR BER93_RS11025 IPR005119 LysR, substrate-binding BER93_RS11030 IPR011051 RmlC-like cupin domain superfamily BER93_RS11030 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain BER93_RS11030 IPR003829 Pirin, N-terminal domain BER93_RS11030 IPR012093 Pirin BER93_RS11030 IPR014710 RmlC-like jelly roll fold BER93_RS11050 IPR036107 Carbon storage regulator superfamily BER93_RS11050 IPR003751 Translational regulator CsrA BER93_RS11055 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily BER93_RS11055 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain BER93_RS11055 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal BER93_RS11055 IPR003156 DHHA1 domain BER93_RS11055 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily BER93_RS11055 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS11055 IPR012947 Threonyl/alanyl tRNA synthetase, SAD BER93_RS11055 IPR002318 Alanine-tRNA ligase, class IIc BER93_RS11055 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria BER93_RS11060 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS11060 IPR003783 Regulatory protein RecX BER93_RS11065 IPR003593 AAA+ ATPase domain BER93_RS11065 IPR013765 DNA recombination and repair protein RecA BER93_RS11065 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface BER93_RS11065 IPR020584 DNA recombination/repair protein RecA, conserved site BER93_RS11065 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11065 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain BER93_RS11065 IPR023400 DNA recombination and repair protein RecA, C-terminal BER93_RS11070 IPR006197 Peptidase S24, LexA-like BER93_RS11070 IPR006199 LexA repressor, DNA-binding domain BER93_RS11070 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS11070 IPR015927 Peptidase S24/S26A/S26B/S26C BER93_RS11070 IPR036286 LexA/Signal peptidase-like superfamily BER93_RS11070 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS11070 IPR039418 LexA-like BER93_RS11070 IPR006200 Transcription regulator LexA BER93_RS11075 IPR011009 Protein kinase-like domain superfamily BER93_RS11075 IPR010232 Probable protein kinase UbiB BER93_RS11075 IPR004147 UbiB domain BER93_RS11125 IPR002514 Transposase IS3/IS911family BER93_RS11125 IPR009057 Homeobox-like domain superfamily BER93_RS11130 IPR036397 Ribonuclease H superfamily BER93_RS11130 IPR025948 HTH-like domain BER93_RS11130 IPR001584 Integrase, catalytic core BER93_RS11130 IPR012337 Ribonuclease H-like superfamily BER93_RS11135 IPR036397 Ribonuclease H superfamily BER93_RS11135 IPR025948 HTH-like domain BER93_RS11135 IPR001584 Integrase, catalytic core BER93_RS11135 IPR012337 Ribonuclease H-like superfamily BER93_RS11175 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS11175 IPR012910 TonB-dependent receptor, plug domain BER93_RS11175 IPR010105 TonB-dependent siderophore receptor BER93_RS11175 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS11175 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS11180 IPR036653 CinA-like, C-terminal BER93_RS11180 IPR008136 CinA, C-terminal BER93_RS11190 IPR030394 HflX-type guanine nucleotide-binding (G) domain BER93_RS11190 IPR016496 GTPase HflX BER93_RS11190 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11190 IPR006073 GTP binding domain BER93_RS11190 IPR042108 GTPase HflX, N-terminal domain superfamily BER93_RS11190 IPR032305 GTP-binding protein, middle domain BER93_RS11190 IPR035647 EF-G domain III/V-like BER93_RS11190 IPR025121 GTPase HflX, N-terminal BER93_RS11195 IPR010920 LSM domain superfamily BER93_RS11195 IPR005001 RNA-binding protein Hfq BER93_RS11200 IPR018022 IPP transferase BER93_RS11200 IPR039657 Dimethylallyltransferase BER93_RS11200 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11205 IPR011005 Dihydropteroate synthase-like BER93_RS11205 IPR000489 Pterin-binding domain BER93_RS11205 IPR006390 Dihydropteroate synthase BER93_RS11210 IPR037219 Peptidase M41-like BER93_RS11210 IPR000642 Peptidase M41 BER93_RS11210 IPR003593 AAA+ ATPase domain BER93_RS11210 IPR011546 Peptidase M41, FtsH extracellular BER93_RS11210 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11210 IPR041569 AAA ATPase, AAA+ lid domain BER93_RS11210 IPR005936 Peptidase, FtsH BER93_RS11210 IPR003960 ATPase, AAA-type, conserved site BER93_RS11210 IPR003959 ATPase, AAA-type, core BER93_RS11215 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS11215 IPR002877 Ribosomal RNA methyltransferase FtsJ domain BER93_RS11215 IPR015507 Ribosomal RNA large subunit methyltransferase E BER93_RS11220 IPR001890 RNA-binding, CRM domain BER93_RS11220 IPR017924 RNA-binding protein YhbY BER93_RS11220 IPR035920 YhbY-like superfamily BER93_RS11225 IPR007523 NDUFAF3/Mth938 domain-containing protein BER93_RS11225 IPR036748 MTH938-like superfamily BER93_RS11245 IPR002514 Transposase IS3/IS911family BER93_RS11245 IPR009057 Homeobox-like domain superfamily BER93_RS11330 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS11330 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_RS11330 IPR006531 Gp5 N-terminal BER93_RS11330 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS11330 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_RS11330 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS11335 IPR005532 Sulfatase-modifying factor enzyme BER93_RS11335 IPR016187 C-type lectin fold BER93_RS11335 IPR042095 Sulfatase-modifying factor enzyme superfamily BER93_RS11345 IPR006531 Gp5 N-terminal BER93_RS11345 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS11345 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS11345 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS11345 IPR010609 Gp5, C-terminal BER93_RS11360 IPR006664 Outer membrane protein, bacterial BER93_RS11360 IPR036737 OmpA-like domain superfamily BER93_RS11360 IPR006665 OmpA-like domain BER93_RS11360 IPR007055 BON domain BER93_RS11360 IPR006690 Outer membrane protein, OmpA-like, conserved site BER93_RS11370 IPR017731 Type VI secretion system, IcmF BER93_RS11370 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11370 IPR025743 IcmF-related, N-terminal domain BER93_RS11370 IPR009612 IcmF-related BER93_RS11370 IPR010623 Type VI secretion system IcmF, C-terminal BER93_RS11435 IPR022385 Rhs repeat-associated core BER93_RS11435 IPR001826 RHS protein BER93_RS11445 IPR006531 Gp5 N-terminal BER93_RS11445 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS11445 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS11445 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS11450 IPR025161 Putative transposase IS4/IS5 family BER93_RS11455 IPR002559 Transposase, IS4-like BER93_RS11460 IPR002559 Transposase, IS4-like BER93_RS11460 IPR008490 Transposase InsH, N-terminal BER93_RS11500 IPR000462 CDP-alcohol phosphatidyltransferase BER93_RS11500 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial BER93_RS11500 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase BER93_RS11505 IPR038476 UvrC homology region 2 superfamily BER93_RS11505 IPR001162 UvrC family homology region BER93_RS11505 IPR000305 GIY-YIG endonuclease BER93_RS11505 IPR010994 RuvA domain 2-like BER93_RS11505 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 BER93_RS11505 IPR001943 UVR domain BER93_RS11505 IPR004791 UvrABC system, subunit C BER93_RS11505 IPR036876 UVR domain superfamily BER93_RS11505 IPR035901 GIY-YIG endonuclease superfamily BER93_RS11520 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase BER93_RS11520 IPR003329 Acylneuraminate cytidylyltransferase BER93_RS11520 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS11525 IPR003758 Tetraacyldisaccharide 4'-kinase BER93_RS11525 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11530 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11530 IPR011917 ABC transporter, lipid A export, MsbA BER93_RS11530 IPR017871 ABC transporter, conserved site BER93_RS11530 IPR036640 ABC transporter type 1, transmembrane domain superfamily BER93_RS11530 IPR003439 ABC transporter-like BER93_RS11530 IPR011527 ABC transporter type 1, transmembrane domain BER93_RS11530 IPR003593 AAA+ ATPase domain BER93_RS11530 IPR039421 Type I protein exporter BER93_RS11535 IPR003400 Biopolymer transport protein ExbD/TolR BER93_RS11540 IPR002898 MotA/TolQ/ExbB proton channel BER93_RS11545 IPR004477 ComEC/Rec2-related protein BER93_RS11545 IPR004797 Competence protein ComEC/Rec2 BER93_RS11545 IPR001279 Metallo-beta-lactamase BER93_RS11545 IPR035681 ComA-like, MBL domain BER93_RS11545 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BER93_RS11555 IPR011924 Lipoprotein releasing system, ATP-binding protein BER93_RS11555 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11555 IPR003439 ABC transporter-like BER93_RS11555 IPR015854 ABC transporter, lipoprotein release, LolD BER93_RS11555 IPR003593 AAA+ ATPase domain BER93_RS11560 IPR003838 ABC transporter permease protein domain BER93_RS11560 IPR025857 MacB-like periplasmic core domain BER93_RS11560 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E BER93_RS11570 IPR005631 Flavinator of succinate dehydrogenase BER93_RS11570 IPR036714 Flavinator of succinate dehydrogenase superfamily BER93_RS11575 IPR036010 2Fe-2S ferredoxin-like superfamily BER93_RS11575 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal BER93_RS11575 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_RS11575 IPR009051 Alpha-helical ferredoxin BER93_RS11575 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein BER93_RS11575 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_RS11575 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site BER93_RS11575 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain BER93_RS11575 IPR012675 Beta-grasp domain superfamily BER93_RS11585 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit BER93_RS11585 IPR011281 Succinate dehydrogenase, flavoprotein subunit BER93_RS11585 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily BER93_RS11585 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily BER93_RS11585 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal BER93_RS11585 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site BER93_RS11585 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS11585 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain BER93_RS11590 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor BER93_RS11590 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit BER93_RS11590 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit BER93_RS11595 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit BER93_RS11595 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit BER93_RS11595 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit BER93_RS11595 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site BER93_RS11600 IPR023758 tRNA-modifying protein YgfZ BER93_RS11600 IPR017703 YgfZ/GcvT conserved site BER93_RS11600 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal BER93_RS11605 IPR040582 MalK, OB fold domain BER93_RS11605 IPR008995 Molybdate/tungstate binding, C-terminal BER93_RS11605 IPR017871 ABC transporter, conserved site BER93_RS11605 IPR003439 ABC transporter-like BER93_RS11605 IPR003593 AAA+ ATPase domain BER93_RS11605 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC BER93_RS11605 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS11610 IPR001282 Glucose-6-phosphate dehydrogenase BER93_RS11610 IPR019796 Glucose-6-phosphate dehydrogenase, active site BER93_RS11610 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal BER93_RS11610 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding BER93_RS11610 IPR036291 NAD(P)-binding domain superfamily BER93_RS11615 IPR003836 Glucokinase BER93_RS11620 IPR037171 NagB/RpiA transferase-like BER93_RS11620 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase BER93_RS11620 IPR005900 6-phosphogluconolactonase, DevB-type BER93_RS11620 IPR039104 6-Phosphogluconolactonase BER93_RS11625 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site BER93_RS11625 IPR042096 Dihydroxy-acid dehydratase, C-terminal BER93_RS11625 IPR037237 IlvD/EDD, N-terminal domain BER93_RS11625 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase BER93_RS11625 IPR004786 6-phosphogluconate dehydratase BER93_RS11630 IPR031338 KDPG/KHG aldolase, active site 2 BER93_RS11630 IPR013785 Aldolase-type TIM barrel BER93_RS11630 IPR000887 KDPG/KHG aldolase BER93_RS11630 IPR031337 KDPG/KHG aldolase, active site 1 BER93_RS11645 IPR024167 Cytochrome c4-like BER93_RS11645 IPR009056 Cytochrome c-like domain BER93_RS11645 IPR036909 Cytochrome c-like domain superfamily BER93_RS11660 IPR008490 Transposase InsH, N-terminal BER93_RS11685 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS11685 IPR005467 Histidine kinase domain BER93_RS11685 IPR001789 Signal transduction response regulator, receiver domain BER93_RS11685 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS11685 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS11685 IPR036641 HPT domain superfamily BER93_RS11685 IPR011006 CheY-like superfamily BER93_RS11685 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS11685 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS11685 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS11690 IPR023323 Tex-like domain superfamily BER93_RS11690 IPR037027 YqgF/RNase H-like domain superfamily BER93_RS11690 IPR006641 YqgF/RNase H-like domain BER93_RS11690 IPR041692 HHH domain 9 BER93_RS11690 IPR032639 Tex protein, YqgF-like domain BER93_RS11690 IPR012340 Nucleic acid-binding, OB-fold BER93_RS11690 IPR012337 Ribonuclease H-like superfamily BER93_RS11690 IPR010994 RuvA domain 2-like BER93_RS11690 IPR022967 RNA-binding domain, S1 BER93_RS11690 IPR023319 Tex-like protein, HTH domain superfamily BER93_RS11690 IPR003029 S1 domain BER93_RS11690 IPR018974 Tex-like protein, N-terminal BER93_RS11715 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit BER93_RS11715 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS11715 IPR029058 Alpha/Beta hydrolase fold BER93_RS11725 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase BER93_RS11725 IPR000462 CDP-alcohol phosphatidyltransferase BER93_RS11740 IPR026530 Phosphoenolpyruvate synthase regulatory protein BER93_RS11740 IPR005177 Bifunctional kinase-pyrophosphorylase BER93_RS11745 IPR008279 PEP-utilising enzyme, mobile domain BER93_RS11745 IPR036637 Phosphohistidine domain superfamily BER93_RS11745 IPR023151 PEP-utilising enzyme, conserved site BER93_RS11745 IPR040442 Pyruvate kinase-like domain superfamily BER93_RS11745 IPR006319 Phosphoenolpyruvate synthase BER93_RS11745 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding BER93_RS11745 IPR000121 PEP-utilising enzyme, C-terminal BER93_RS11745 IPR018274 PEP-utilising enzyme, active site BER93_RS11745 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS11745 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily BER93_RS11750 IPR010920 LSM domain superfamily BER93_RS11750 IPR008910 Conserved TM helix BER93_RS11750 IPR006685 Mechanosensitive ion channel MscS BER93_RS11750 IPR023408 Mechanosensitive ion channel MscS domain superfamily BER93_RS11750 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 BER93_RS11750 IPR011066 Mechanosensitive ion channel MscS, C-terminal BER93_RS11750 IPR006686 Mechanosensitive ion channel MscS, conserved site BER93_RS11755 IPR012337 Ribonuclease H-like superfamily BER93_RS11755 IPR013520 Exonuclease, RNase T/DNA polymerase III BER93_RS11755 IPR036397 Ribonuclease H superfamily BER93_RS11755 IPR022894 Oligoribonuclease BER93_RS11760 IPR016192 APOBEC/CMP deaminase, zinc-binding BER93_RS11760 IPR028883 tRNA-specific adenosine deaminase BER93_RS11760 IPR016193 Cytidine deaminase-like BER93_RS11760 IPR002125 Cytidine and deoxycytidylate deaminase domain BER93_RS11765 IPR001367 Iron dependent repressor, metal binding and dimerisation domain BER93_RS11765 IPR022687 DTXR-type HTH domain BER93_RS11765 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS11765 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS11765 IPR022689 Iron dependent repressor BER93_RS11765 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily BER93_RS11770 IPR001046 NRAMP family BER93_RS11775 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS11775 IPR000639 Epoxide hydrolase-like BER93_RS11775 IPR029058 Alpha/Beta hydrolase fold BER93_RS11780 IPR008490 Transposase InsH, N-terminal BER93_RS11820 IPR002514 Transposase IS3/IS911family BER93_RS11820 IPR009057 Homeobox-like domain superfamily BER93_RS11825 IPR012337 Ribonuclease H-like superfamily BER93_RS11825 IPR025948 HTH-like domain BER93_RS11825 IPR036397 Ribonuclease H superfamily BER93_RS11825 IPR001584 Integrase, catalytic core BER93_RS11840 IPR001584 Integrase, catalytic core BER93_RS11840 IPR025948 HTH-like domain BER93_RS11840 IPR012337 Ribonuclease H-like superfamily BER93_RS11840 IPR036397 Ribonuclease H superfamily BER93_RS11845 IPR009057 Homeobox-like domain superfamily BER93_RS11845 IPR002514 Transposase IS3/IS911family BER93_RS11855 IPR008490 Transposase InsH, N-terminal BER93_RS11865 IPR000965 GPR domain BER93_RS11865 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site BER93_RS11865 IPR015590 Aldehyde dehydrogenase domain BER93_RS11865 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_RS11865 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_RS11865 IPR016161 Aldehyde/histidinol dehydrogenase BER93_RS11865 IPR012134 Glutamate-5-semialdehyde dehydrogenase BER93_RS11870 IPR036393 Acetylglutamate kinase-like superfamily BER93_RS11870 IPR001048 Aspartate/glutamate/uridylate kinase BER93_RS11870 IPR041739 Glutamate-5-kinase domain BER93_RS11870 IPR011529 Glutamate 5-kinase BER93_RS11870 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase BER93_RS11870 IPR019797 Glutamate 5-kinase, conserved site BER93_RS11870 IPR036974 PUA domain superfamily BER93_RS11870 IPR015947 PUA-like superfamily BER93_RS11870 IPR002478 PUA domain BER93_RS11870 IPR001057 Glutamate/acetylglutamate kinase BER93_RS11885 IPR009049 Argininosuccinate lyase BER93_RS11885 IPR024083 Fumarase/histidase, N-terminal BER93_RS11885 IPR000362 Fumarate lyase family BER93_RS11885 IPR022761 Fumarate lyase, N-terminal BER93_RS11885 IPR008948 L-Aspartase-like BER93_RS11885 IPR020557 Fumarate lyase, conserved site BER93_RS11890 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site BER93_RS11890 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 BER93_RS11890 IPR036291 NAD(P)-binding domain superfamily BER93_RS11890 IPR000534 Semialdehyde dehydrogenase, NAD-binding BER93_RS11900 IPR006855 Vertebrate-like NAGS Gcn5-related N-acetyltransferase (GNAT) domain BER93_RS11900 IPR001048 Aspartate/glutamate/uridylate kinase BER93_RS11900 IPR041734 N-Acetyl-L-glutamate kinase, fungal-type BER93_RS11900 IPR011242 Acetylglutamate kinase ArgB, GNAT domain-containing BER93_RS11900 IPR016181 Acyl-CoA N-acyltransferase BER93_RS11900 IPR004662 Acetylglutamate kinase family BER93_RS11900 IPR036393 Acetylglutamate kinase-like superfamily BER93_RS11905 IPR011650 Peptidase M20, dimerisation domain BER93_RS11905 IPR002933 Peptidase M20 BER93_RS11905 IPR036264 Bacterial exopeptidase dimerisation domain BER93_RS11905 IPR010169 Acetylornithine deacetylase ArgE BER93_RS11910 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS11910 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body BER93_RS11910 IPR023434 Argininosuccinate synthase, type 1 subfamily BER93_RS11910 IPR018223 Argininosuccinate synthase, conserved site BER93_RS11910 IPR001518 Argininosuccinate synthase BER93_RS11915 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily BER93_RS11915 IPR006130 Aspartate/ornithine carbamoyltransferase BER93_RS11915 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding BER93_RS11915 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain BER93_RS11925 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase BER93_RS11925 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR BER93_RS11925 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding BER93_RS11925 IPR032678 tRNA synthetases class I, catalytic domain BER93_RS11925 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS11925 IPR015803 Cysteine-tRNA ligase BER93_RS11930 IPR023939 Cysteine desulfuration protein SufE BER93_RS11930 IPR003808 Fe-S metabolism associated domain, SufE-like BER93_RS11940 IPR020458 Zinc finger, DksA/TraR C4-type conserved site BER93_RS11940 IPR037187 DksA, N-terminal domain superfamily BER93_RS11940 IPR000962 Zinc finger, DksA/TraR C4-type BER93_RS11940 IPR012784 RNA polymerase-binding transcription factor DksA BER93_RS11945 IPR002696 Putative membrane protein insertion efficiency factor BER93_RS11950 IPR006680 Amidohydrolase-related BER93_RS11950 IPR004722 Dihydroorotase BER93_RS11950 IPR002195 Dihydroorotase, conserved site BER93_RS11950 IPR011059 Metal-dependent hydrolase, composite domain superfamily BER93_RS11950 IPR032466 Metal-dependent hydrolase BER93_RS11955 IPR016047 Peptidase M23 BER93_RS11955 IPR011055 Duplicated hybrid motif BER93_RS11955 IPR003646 SH3-like domain, bacterial-type BER93_RS11960 IPR008490 Transposase InsH, N-terminal BER93_RS11960 IPR002559 Transposase, IS4-like BER93_RS11985 IPR000743 Glycoside hydrolase, family 28 BER93_RS11985 IPR012334 Pectin lyase fold BER93_RS11985 IPR011050 Pectin lyase fold/virulence factor BER93_RS11995 IPR041492 Haloacid dehalogenase-like hydrolase BER93_RS11995 IPR023214 HAD superfamily BER93_RS11995 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BER93_RS11995 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic BER93_RS11995 IPR037512 Phosphoglycolate phosphatase, prokaryotic BER93_RS11995 IPR036412 HAD-like superfamily BER93_RS11995 IPR006439 HAD hydrolase, subfamily IA BER93_RS12000 IPR010233 Ubiquinone biosynthesis O-methyltransferase BER93_RS12000 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS12005 IPR006680 Amidohydrolase-related BER93_RS12005 IPR032466 Metal-dependent hydrolase BER93_RS12005 IPR011059 Metal-dependent hydrolase, composite domain superfamily BER93_RS12005 IPR023512 Deaminase MtaD/DadD BER93_RS12015 IPR015365 Elongation factor P, C-terminal BER93_RS12015 IPR011768 Translation elongation factor P BER93_RS12015 IPR012340 Nucleic acid-binding, OB-fold BER93_RS12015 IPR014722 Ribosomal protein L2, domain 2 BER93_RS12015 IPR013852 Translation elongation factor P/YeiP, conserved site BER93_RS12015 IPR001059 Translation elongation factor P/YeiP, central BER93_RS12015 IPR020599 Translation elongation factor P/YeiP BER93_RS12015 IPR013185 Translation elongation factor, KOW-like BER93_RS12015 IPR008991 Translation protein SH3-like domain superfamily BER93_RS12020 IPR013785 Aldolase-type TIM barrel BER93_RS12020 IPR022462 Lysine-2,3-aminomutase-like BER93_RS12020 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BER93_RS12020 IPR007197 Radical SAM BER93_RS12025 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_RS12025 IPR001537 tRNA/rRNA methyltransferase, SpoU type BER93_RS12025 IPR004384 RNA methyltransferase TrmJ/LasT BER93_RS12025 IPR029028 Alpha/beta knot methyltransferases BER93_RS12030 IPR020583 Inositol monophosphatase, metal-binding site BER93_RS12030 IPR033942 Inositol monophosphatase BER93_RS12030 IPR000760 Inositol monophosphatase-like BER93_RS12030 IPR020550 Inositol monophosphatase, conserved site BER93_RS12030 IPR022337 Inositol monophosphatase, SuhB BER93_RS12035 IPR001189 Manganese/iron superoxide dismutase BER93_RS12035 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily BER93_RS12035 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily BER93_RS12035 IPR019831 Manganese/iron superoxide dismutase, N-terminal BER93_RS12035 IPR019832 Manganese/iron superoxide dismutase, C-terminal BER93_RS12035 IPR019833 Manganese/iron superoxide dismutase, binding site BER93_RS12040 IPR016191 Ribonuclease/ribotoxin BER93_RS12040 IPR000026 Guanine-specific ribonuclease N1/T1/U2 BER93_RS12050 IPR032781 ABC-transporter extension domain BER93_RS12050 IPR003439 ABC transporter-like BER93_RS12050 IPR032524 ABC transporter Uup, C-terminal BER93_RS12050 IPR017871 ABC transporter, conserved site BER93_RS12050 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS12050 IPR003593 AAA+ ATPase domain BER93_RS12050 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily BER93_RS12055 IPR028619 ATP-dependent RNA helicase DbpA BER93_RS12055 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain BER93_RS12055 IPR011545 DEAD/DEAH box helicase domain BER93_RS12055 IPR001650 Helicase, C-terminal BER93_RS12055 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BER93_RS12055 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS12055 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER93_RS12055 IPR014014 RNA helicase, DEAD-box type, Q motif BER93_RS12055 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS12060 IPR029057 Phosphoribosyltransferase-like BER93_RS12060 IPR005764 Adenine phosphoribosyl transferase BER93_RS12060 IPR000836 Phosphoribosyltransferase domain BER93_RS12065 IPR003846 Protein adenylyltransferase SelO BER93_RS12075 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BER93_RS12075 IPR010987 Glutathione S-transferase, C-terminal-like BER93_RS12075 IPR004045 Glutathione S-transferase, N-terminal BER93_RS12075 IPR004046 Glutathione S-transferase, C-terminal BER93_RS12075 IPR034330 Glutathione S-transferases, class Zeta , C-terminal BER93_RS12075 IPR034333 Glutathione S-transferases, class Zeta , N-terminal BER93_RS12075 IPR040079 Glutathione Transferase family BER93_RS12075 IPR036249 Thioredoxin-like superfamily BER93_RS12075 IPR005955 Glutathione S-transferases, class Zeta BER93_RS12080 IPR019844 Cold-shock (CSD) domain BER93_RS12080 IPR012340 Nucleic acid-binding, OB-fold BER93_RS12080 IPR002059 Cold-shock protein, DNA-binding BER93_RS12080 IPR011129 Cold shock domain BER93_RS12080 IPR012156 Cold shock, CspA BER93_RS12090 IPR009822 YaeQ BER93_RS12090 IPR038590 YaeQ superfamily BER93_RS12090 IPR011335 Restriction endonuclease type II-like BER93_RS12095 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like BER93_RS12095 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS12095 IPR023166 HI0933-like insert domain superfamily BER93_RS12100 IPR035919 EAL domain superfamily BER93_RS12100 IPR000160 GGDEF domain BER93_RS12100 IPR029787 Nucleotide cyclase BER93_RS12100 IPR001789 Signal transduction response regulator, receiver domain BER93_RS12100 IPR011006 CheY-like superfamily BER93_RS12100 IPR001633 EAL domain BER93_RS12105 IPR001915 Peptidase M48 BER93_RS12105 IPR022919 Peptidase M48, protease HtpX, putative BER93_RS12110 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS12110 IPR022380 Glutamyl-Q tRNA(Asp) synthetase BER93_RS12110 IPR000924 Glutamyl/glutaminyl-tRNA synthetase BER93_RS12110 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain BER93_RS12115 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS12115 IPR011283 Acetoacetyl-CoA reductase BER93_RS12115 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS12115 IPR036291 NAD(P)-binding domain superfamily BER93_RS12120 IPR007897 PHB accumulation regulatory BER93_RS12120 IPR012909 PHA accumulation regulator DNA-binding, N-terminal BER93_RS12120 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR BER93_RS12135 IPR013507 DNA mismatch repair protein, S5 domain 2-like BER93_RS12135 IPR002099 DNA mismatch repair protein family, N-terminal BER93_RS12135 IPR020667 DNA mismatch repair protein, MutL BER93_RS12135 IPR014762 DNA mismatch repair, conserved site BER93_RS12135 IPR042120 MutL, C-terminal domain, dimerisation subdomain BER93_RS12135 IPR014790 MutL, C-terminal, dimerisation BER93_RS12135 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS12135 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms BER93_RS12135 IPR042121 MutL, C-terminal domain, regulatory subdomain BER93_RS12135 IPR037198 MutL, C-terminal domain superfamily BER93_RS12135 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS12135 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS12140 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain BER93_RS12140 IPR021731 AMIN domain BER93_RS12140 IPR006311 Twin-arginine translocation pathway, signal sequence BER93_RS12150 IPR017953 Carbohydrate kinase, predicted, conserved site BER93_RS12150 IPR004443 YjeF N-terminal domain BER93_RS12150 IPR036652 YjeF N-terminal domain superfamily BER93_RS12150 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr BER93_RS12150 IPR029056 Ribokinase-like BER93_RS12150 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase BER93_RS12155 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_RS12155 IPR013542 Domain of unknown function DUF1730 BER93_RS12155 IPR004453 Epoxyqueuosine reductase QueG BER93_RS12155 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_RS12160 IPR025824 OB-fold nucleic acid binding domain BER93_RS12160 IPR003753 Exonuclease VII, large subunit BER93_RS12160 IPR020579 Exonuclease VII, large subunit, C-terminal BER93_RS12180 IPR003744 Queuosine precursor transporter BER93_RS12200 IPR036589 Homocysteine-binding domain superfamily BER93_RS12200 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT BER93_RS12200 IPR003726 Homocysteine-binding domain BER93_RS12205 IPR004840 Amino acid permease, conserved site BER93_RS12205 IPR004841 Amino acid permease/ SLC12A domain BER93_RS12215 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_RS12215 IPR029038 Methionyl-tRNA synthetase, Zn-domain BER93_RS12215 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal BER93_RS12215 IPR033911 Methioninyl-tRNA synthetase core domain BER93_RS12215 IPR015413 Methionyl/Leucyl tRNA synthetase BER93_RS12215 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding BER93_RS12215 IPR002547 tRNA-binding domain BER93_RS12215 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS12215 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain BER93_RS12215 IPR014758 Methionyl-tRNA synthetase BER93_RS12215 IPR012340 Nucleic acid-binding, OB-fold BER93_RS12215 IPR023458 Methionine-tRNA ligase, type 1 BER93_RS12225 IPR007202 4Fe-4S domain BER93_RS12225 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_RS12225 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_RS12225 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB BER93_RS12225 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria BER93_RS12240 IPR013324 RNA polymerase sigma factor, region 3/4-like BER93_RS12240 IPR007630 RNA polymerase sigma-70 region 4 BER93_RS12240 IPR013325 RNA polymerase sigma factor, region 2 BER93_RS12240 IPR039425 RNA polymerase sigma-70 like BER93_RS12240 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS12240 IPR014284 RNA polymerase sigma-70 like domain BER93_RS12240 IPR007627 RNA polymerase sigma-70 region 2 BER93_RS12265 IPR003333 Mycolic acid cyclopropane synthase BER93_RS12265 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS12280 IPR003333 Mycolic acid cyclopropane synthase BER93_RS12280 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS12285 IPR035709 RutC family, YoaB-like BER93_RS12285 IPR006175 YjgF/YER057c/UK114 family BER93_RS12285 IPR035959 RutC-like superfamily BER93_RS12285 IPR019897 RidA, conserved site BER93_RS12295 IPR016181 Acyl-CoA N-acyltransferase BER93_RS12295 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD BER93_RS12295 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal BER93_RS12315 IPR008490 Transposase InsH, N-terminal BER93_RS12330 IPR020846 Major facilitator superfamily domain BER93_RS12330 IPR011701 Major facilitator superfamily BER93_RS12330 IPR036259 MFS transporter superfamily BER93_RS12335 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal BER93_RS12335 IPR013785 Aldolase-type TIM barrel BER93_RS12340 IPR013988 PhnA protein, C-terminal BER93_RS12340 IPR013987 PhnA protein, N-terminal BER93_RS12340 IPR004624 PhnA protein BER93_RS12360 IPR004753 Cell shape determining protein MreB BER93_RS12375 IPR006358 Transcription elongation factor GreB BER93_RS12375 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily BER93_RS12375 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily BER93_RS12375 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal BER93_RS12375 IPR023459 Transcription elongation factor GreA/GreB family BER93_RS12375 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal BER93_RS12375 IPR028624 Transcription elongation factor GreA/GreB BER93_RS12375 IPR018151 Transcription elongation factor, GreA/GreB, conserved site BER93_RS12390 IPR005839 Methylthiotransferase BER93_RS12390 IPR020612 Methylthiotransferase, conserved site BER93_RS12390 IPR006638 Elp3/MiaB/NifB BER93_RS12390 IPR038135 Methylthiotransferase, N-terminal domain superfamily BER93_RS12390 IPR005840 Ribosomal protein S12 methylthiotransferase RimO BER93_RS12390 IPR041582 RimO, TRAM domain BER93_RS12390 IPR007197 Radical SAM BER93_RS12390 IPR023404 Radical SAM, alpha/beta horseshoe BER93_RS12390 IPR002792 TRAM domain BER93_RS12390 IPR013848 Methylthiotransferase, N-terminal BER93_RS12405 IPR029058 Alpha/Beta hydrolase fold BER93_RS12405 IPR002925 Dienelactone hydrolase BER93_RS12415 IPR011962 dCTP deaminase BER93_RS12415 IPR029054 dUTPase-like BER93_RS12415 IPR033704 dUTPase, trimeric BER93_RS12415 IPR036157 dUTPase-like superfamily BER93_RS12420 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 BER93_RS12420 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS12420 IPR000808 Mrp, conserved site BER93_RS12420 IPR019591 Mrp/NBP35 ATP-binding protein BER93_RS12430 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS12435 IPR042089 Peptidase M13, domain 2 BER93_RS12435 IPR008753 Peptidase M13, N-terminal domain BER93_RS12435 IPR018497 Peptidase M13, C-terminal domain BER93_RS12435 IPR000718 Peptidase M13 BER93_RS12435 IPR024079 Metallopeptidase, catalytic domain superfamily BER93_RS12455 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I BER93_RS12455 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_RS12455 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site BER93_RS12455 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS12455 IPR006322 Glutathione reductase, eukaryote/bacterial BER93_RS12455 IPR023753 FAD/NAD(P)-binding domain BER93_RS12455 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily BER93_RS12460 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS12460 IPR006076 FAD dependent oxidoreductase BER93_RS12460 IPR023080 D-amino acid dehydrogenase DadA BER93_RS12465 IPR007349 Domain of unknown function DUF418 BER93_RS12470 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BER93_RS12475 IPR038765 Papain-like cysteine peptidase superfamily BER93_RS12475 IPR000064 Endopeptidase, NLPC/P60 domain BER93_RS12480 IPR000064 Endopeptidase, NLPC/P60 domain BER93_RS12480 IPR038765 Papain-like cysteine peptidase superfamily BER93_RS12490 IPR002514 Transposase IS3/IS911family BER93_RS12490 IPR009057 Homeobox-like domain superfamily BER93_RS12495 IPR036397 Ribonuclease H superfamily BER93_RS12495 IPR025948 HTH-like domain BER93_RS12495 IPR001584 Integrase, catalytic core BER93_RS12495 IPR012337 Ribonuclease H-like superfamily BER93_RS12500 IPR008490 Transposase InsH, N-terminal BER93_RS12505 IPR008490 Transposase InsH, N-terminal BER93_RS12505 IPR002559 Transposase, IS4-like BER93_RS12530 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS12530 IPR000847 Transcription regulator HTH, LysR BER93_RS12530 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS12530 IPR005119 LysR, substrate-binding BER93_RS12535 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) BER93_RS12535 IPR006195 Aminoacyl-tRNA synthetase, class II BER93_RS12535 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm BER93_RS12535 IPR002317 Serine-tRNA ligase, type1 BER93_RS12535 IPR015866 Serine-tRNA synthetase, type1, N-terminal BER93_RS12535 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily BER93_RS12535 IPR033729 Serine-tRNA ligase catalytic core domain BER93_RS12540 IPR006260 TonB/TolA, C-terminal BER93_RS12540 IPR037682 TonB, C-terminal BER93_RS12550 IPR036968 Enolpyruvate transferase domain superfamily BER93_RS12550 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase BER93_RS12550 IPR001986 Enolpyruvate transferase domain BER93_RS12550 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site BER93_RS12550 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta BER93_RS12555 IPR001086 Prephenate dehydratase BER93_RS12555 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain BER93_RS12555 IPR002701 Chorismate mutase II, prokaryotic-type BER93_RS12555 IPR036979 Chorismate mutase domain superfamily BER93_RS12555 IPR036263 Chorismate mutase type II superfamily BER93_RS12555 IPR002912 ACT domain BER93_RS12555 IPR018528 Prephenate dehydratase, conserved site BER93_RS12555 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase BER93_RS12560 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS12560 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS12560 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS12560 IPR022278 Phosphoserine aminotransferase BER93_RS12560 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BER93_RS12560 IPR000192 Aminotransferase class V domain BER93_RS12565 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP BER93_RS12565 IPR000572 Oxidoreductase, molybdopterin-binding domain BER93_RS12565 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily BER93_RS12570 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS12570 IPR000843 LacI-type HTH domain BER93_RS12570 IPR028082 Periplasmic binding protein-like I BER93_RS12575 IPR036637 Phosphohistidine domain superfamily BER93_RS12575 IPR023151 PEP-utilising enzyme, conserved site BER93_RS12575 IPR000121 PEP-utilising enzyme, C-terminal BER93_RS12575 IPR002178 PTS EIIA type-2 domain BER93_RS12575 IPR008731 Phosphotransferase system, enzyme I N-terminal BER93_RS12575 IPR018274 PEP-utilising enzyme, active site BER93_RS12575 IPR008279 PEP-utilising enzyme, mobile domain BER93_RS12575 IPR035895 HPr-like superfamily BER93_RS12575 IPR000032 Phosphocarrier protein HPr-like BER93_RS12575 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BER93_RS12575 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BER93_RS12575 IPR036618 PtsI, HPr-binding domain superfamily BER93_RS12575 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily BER93_RS12575 IPR040442 Pyruvate kinase-like domain superfamily BER93_RS12575 IPR016152 Phosphotransferase/anion transporter BER93_RS12575 IPR006318 Phosphotransferase system, enzyme I-like BER93_RS12580 IPR022463 Fructose 1-phosphate kinase BER93_RS12580 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site BER93_RS12580 IPR011611 Carbohydrate kinase PfkB BER93_RS12580 IPR029056 Ribokinase-like BER93_RS12580 IPR017583 Tagatose/fructose phosphokinase BER93_RS12585 IPR013011 Phosphotransferase system, EIIB component, type 2 BER93_RS12585 IPR013014 Phosphotransferase system, EIIC component, type 2 BER93_RS12585 IPR036095 PTS system IIB component-like superfamily BER93_RS12585 IPR003501 Phosphotransferase system, EIIB component, type 2/3 BER93_RS12585 IPR003353 Phosphotransferase system, fructose-specific IIB subunit BER93_RS12585 IPR006327 Phosphotransferase system, fructose IIC component BER93_RS12595 IPR005665 Protein-export membrane protein SecF, bacterial BER93_RS12595 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BER93_RS12595 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BER93_RS12595 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BER93_RS12600 IPR001036 Acriflavin resistance protein BER93_RS12600 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BER93_RS12600 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BER93_RS12600 IPR027398 SecD export protein N-terminal TM domain BER93_RS12600 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BER93_RS12600 IPR005791 Protein translocase subunit SecD BER93_RS12605 IPR003849 Preprotein translocase YajC BER93_RS12610 IPR004803 tRNA-guanine transglycosylase BER93_RS12610 IPR036511 Queuine tRNA-ribosyltransferase-like BER93_RS12610 IPR002616 tRNA-guanine(15) transglycosylase-like BER93_RS12615 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily BER93_RS12615 IPR042119 QueA, domain 2 BER93_RS12615 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA BER93_RS12615 IPR042118 QueA, domain 1 BER93_RS12625 IPR005814 Aminotransferase class-III BER93_RS12625 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS12625 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS12625 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase BER93_RS12625 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS12640 IPR000836 Phosphoribosyltransferase domain BER93_RS12640 IPR029057 Phosphoribosyltransferase-like BER93_RS12640 IPR005765 Uracil phosphoribosyl transferase BER93_RS12640 IPR034332 Uracil phosphoribosyltransferase, bacterial-type BER93_RS12645 IPR025161 Putative transposase IS4/IS5 family BER93_RS12650 IPR002559 Transposase, IS4-like BER93_RS12655 IPR008928 Six-hairpin glycosidase superfamily BER93_RS12655 IPR013783 Immunoglobulin-like fold BER93_RS12655 IPR018221 Glycoside hydrolase family 9, His active site BER93_RS12655 IPR014756 Immunoglobulin E-set BER93_RS12655 IPR012341 Six-hairpin glycosidase-like superfamily BER93_RS12655 IPR004197 Cellulase, Ig-like domain BER93_RS12655 IPR001701 Glycoside hydrolase family 9 BER93_RS12655 IPR033126 Glycosyl hydrolases family 9, Asp/Glu active sites BER93_RS12660 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_RS12660 IPR000101 Gamma-glutamyltranspeptidase BER93_RS12665 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_RS12665 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_RS12675 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS12675 IPR001980 Phosphopantetheine adenylyltransferase BER93_RS12675 IPR004821 Cytidyltransferase-like domain BER93_RS12680 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS12680 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_RS12680 IPR004398 RNA methyltransferase, RsmD BER93_RS12685 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS12685 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS12685 IPR001404 Heat shock protein Hsp90 family BER93_RS12685 IPR037196 HSP90, C-terminal domain BER93_RS12685 IPR019805 Heat shock protein Hsp90, conserved site BER93_RS12685 IPR020575 Heat shock protein Hsp90, N-terminal BER93_RS12685 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS12710 IPR008490 Transposase InsH, N-terminal BER93_RS12710 IPR002559 Transposase, IS4-like BER93_RS12725 IPR001991 Sodium:dicarboxylate symporter BER93_RS12725 IPR036458 Sodium:dicarboxylate symporter superfamily BER93_RS12725 IPR033380 Glutamate-aspartate symport protein GltP/GltT BER93_RS12725 IPR018107 Sodium:dicarboxylate symporter, conserved site BER93_RS12730 IPR001952 Alkaline phosphatase BER93_RS12730 IPR018299 Alkaline phosphatase, active site BER93_RS12730 IPR017850 Alkaline-phosphatase-like, core domain superfamily BER93_RS12735 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS12735 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain BER93_RS12735 IPR012094 tRNA(Ile)-lysidine synthase BER93_RS12735 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal BER93_RS12735 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal BER93_RS12735 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal BER93_RS12740 IPR003761 Exonuclease VII, small subunit BER93_RS12740 IPR037004 Exonuclease VII, small subunit superfamily BER93_RS12745 IPR033749 Polyprenyl synthetase, conserved site BER93_RS12745 IPR000092 Polyprenyl synthetase BER93_RS12745 IPR008949 Isoprenoid synthase domain superfamily BER93_RS12760 IPR036059 Metalloprotease TldD/PmbA superfamily BER93_RS12760 IPR035068 Metalloprotease TldD/PmbA, N-terminal BER93_RS12760 IPR002510 Metalloprotease TldD/PmbA BER93_RS12765 IPR023153 PSPTO4464-like domain superfamily BER93_RS12765 IPR006839 Ribosome-associated, YjgA BER93_RS12770 IPR025502 TldD BER93_RS12770 IPR002510 Metalloprotease TldD/PmbA BER93_RS12770 IPR036059 Metalloprotease TldD/PmbA superfamily BER93_RS12770 IPR035068 Metalloprotease TldD/PmbA, N-terminal BER93_RS12785 IPR004659 Ribonuclease E/G BER93_RS12785 IPR022967 RNA-binding domain, S1 BER93_RS12785 IPR003029 S1 domain BER93_RS12785 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G BER93_RS12785 IPR012340 Nucleic acid-binding, OB-fold BER93_RS12790 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein BER93_RS12790 IPR029001 Inosine triphosphate pyrophosphatase-like BER93_RS12795 IPR007497 Protein of unknown function DUF541 BER93_RS12800 IPR029028 Alpha/beta knot methyltransferases BER93_RS12800 IPR003742 RNA methyltransferase RlmH BER93_RS12800 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_RS12805 IPR009057 Homeobox-like domain superfamily BER93_RS12805 IPR002514 Transposase IS3/IS911family BER93_RS12825 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BER93_RS12830 IPR004821 Cytidyltransferase-like domain BER93_RS12830 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase BER93_RS12830 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS12845 IPR025709 Leucyl-tRNA synthetase, editing domain BER93_RS12845 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding BER93_RS12845 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS12845 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding BER93_RS12845 IPR002302 Leucine-tRNA ligase BER93_RS12845 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain BER93_RS12845 IPR002300 Aminoacyl-tRNA synthetase, class Ia BER93_RS12845 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_RS12855 IPR011990 Tetratricopeptide-like helical domain superfamily BER93_RS12855 IPR013766 Thioredoxin domain BER93_RS12855 IPR036249 Thioredoxin-like superfamily BER93_RS12880 IPR023346 Lysozyme-like domain superfamily BER93_RS12880 IPR008258 Transglycosylase SLT domain 1 BER93_RS12890 IPR038591 NolW-like superfamily BER93_RS12890 IPR004845 Type II secretion system GspD, conserved site BER93_RS12890 IPR003522 Type III secretion system outer membrane pore YscC/HrcC BER93_RS12890 IPR005644 NolW-like BER93_RS12890 IPR004846 Type II/III secretion system BER93_RS12905 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain BER93_RS12905 IPR003593 AAA+ ATPase domain BER93_RS12905 IPR040627 T3SS EscN ATPase, C-terminal BER93_RS12905 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_RS12905 IPR005714 ATPase, type III secretion system, FliI/YscN BER93_RS12905 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site BER93_RS12905 IPR013380 ATPase, type III secretion system, H+-transporting BER93_RS12905 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS12920 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ BER93_RS12920 IPR006182 Secretory protein YscJ/FliF BER93_RS12935 IPR006135 Type III secretion system substrate exporter BER93_RS12935 IPR029025 Type III secretion system substrate exporter, C-terminal BER93_RS12935 IPR006307 Type III exporter system, secretion apparatus protein BsaZ BER93_RS12940 IPR042194 FHIPEP, domain 1 BER93_RS12940 IPR042193 FHIPEP, domain 3 BER93_RS12940 IPR042196 FHIPEP, domain 4 BER93_RS12940 IPR025505 FHIPEP conserved site BER93_RS12940 IPR001712 Type III secretion system FHIPEP BER93_RS12955 IPR005838 Type III secretion system inner membrane P protein BER93_RS12955 IPR005773 Yop virulence translocation protein R BER93_RS12960 IPR002191 Bacterial export protein family 3 BER93_RS12960 IPR006305 Flagellar biosynthesis protein FliQ BER93_RS12990 IPR012334 Pectin lyase fold BER93_RS12990 IPR004898 Pectate lyase PlyH/PlyE-like BER93_RS12990 IPR011050 Pectin lyase fold/virulence factor BER93_RS13015 IPR007211 Protein of unknown function DUF378 BER93_RS13040 IPR002559 Transposase, IS4-like BER93_RS13050 IPR036640 ABC transporter type 1, transmembrane domain superfamily BER93_RS13050 IPR011527 ABC transporter type 1, transmembrane domain BER93_RS13050 IPR039421 Type I protein exporter BER93_RS13050 IPR003439 ABC transporter-like BER93_RS13050 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13050 IPR003593 AAA+ ATPase domain BER93_RS13050 IPR017871 ABC transporter, conserved site BER93_RS13060 IPR038770 Sodium/solute symporter superfamily BER93_RS13060 IPR006153 Cation/H+ exchanger BER93_RS13080 IPR000160 GGDEF domain BER93_RS13080 IPR029787 Nucleotide cyclase BER93_RS13085 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site BER93_RS13085 IPR002942 RNA-binding S4 domain BER93_RS13085 IPR036986 RNA-binding S4 domain superfamily BER93_RS13085 IPR006145 Pseudouridine synthase, RsuA/RluA BER93_RS13085 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS13085 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_RS13085 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain BER93_RS13095 IPR029787 Nucleotide cyclase BER93_RS13095 IPR001633 EAL domain BER93_RS13095 IPR000160 GGDEF domain BER93_RS13095 IPR013656 PAS fold-4 BER93_RS13095 IPR035965 PAS domain superfamily BER93_RS13095 IPR035919 EAL domain superfamily BER93_RS13095 IPR000014 PAS domain BER93_RS13100 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain BER93_RS13100 IPR011545 DEAD/DEAH box helicase domain BER93_RS13100 IPR028618 ATP-dependent RNA helicase DeaD BER93_RS13100 IPR034415 CsdA, RNA recognition motif BER93_RS13100 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS13100 IPR014014 RNA helicase, DEAD-box type, Q motif BER93_RS13100 IPR001650 Helicase, C-terminal BER93_RS13100 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13100 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER93_RS13100 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BER93_RS13145 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily BER93_RS13145 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS13145 IPR023546 Methylated-DNA--protein-cysteine methyltransferase BER93_RS13145 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain BER93_RS13145 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding BER93_RS13145 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain BER93_RS13145 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site BER93_RS13160 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS13160 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS13160 IPR012910 TonB-dependent receptor, plug domain BER93_RS13160 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS13170 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding BER93_RS13170 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain BER93_RS13170 IPR006656 Molybdopterin oxidoreductase BER93_RS13170 IPR006657 Molybdopterin dinucleotide-binding domain BER93_RS13170 IPR006478 Formate dehydrogenase, alpha subunit BER93_RS13170 IPR009010 Aspartate decarboxylase-like domain superfamily BER93_RS13170 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_RS13170 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_RS13170 IPR041924 Formate dehydrogenase H, N-terminal BER93_RS13170 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain BER93_RS13170 IPR036010 2Fe-2S ferredoxin-like superfamily BER93_RS13180 IPR000209 Peptidase S8/S53 domain BER93_RS13180 IPR025965 FlgD Ig-like domain BER93_RS13180 IPR023827 Peptidase S8, subtilisin, Asp-active site BER93_RS13180 IPR015500 Peptidase S8, subtilisin-related BER93_RS13180 IPR022398 Peptidase S8, subtilisin, His-active site BER93_RS13180 IPR034213 Vpr-like peptidase, catalytic domain BER93_RS13180 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 BER93_RS13180 IPR036852 Peptidase S8/S53 domain superfamily BER93_RS13180 IPR003137 PA domain BER93_RS13180 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily BER93_RS13180 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_RS13205 IPR001547 Glycoside hydrolase, family 5 BER93_RS13205 IPR018087 Glycoside hydrolase, family 5, conserved site BER93_RS13205 IPR017853 Glycoside hydrolase superfamily BER93_RS13210 IPR008490 Transposase InsH, N-terminal BER93_RS13215 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS13215 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS13215 IPR002481 Ferric-uptake regulator BER93_RS13220 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain BER93_RS13220 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS13220 IPR033910 Glutamyl-tRNA synthetase BER93_RS13220 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding BER93_RS13220 IPR000924 Glutamyl/glutaminyl-tRNA synthetase BER93_RS13220 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 BER93_RS13220 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_RS13220 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial BER93_RS13250 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_RS13250 IPR007473 Ribosomal RNA large subunit methyltransferase J BER93_RS13250 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS13260 IPR037235 TRCF-like, C-terminal domain BER93_RS13260 IPR036101 CarD-like/TRCF domain superfamily BER93_RS13260 IPR003711 CarD-like/TRCF domain BER93_RS13260 IPR041471 UvrB, interaction domain BER93_RS13260 IPR011545 DEAD/DEAH box helicase domain BER93_RS13260 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13260 IPR004576 Transcription-repair coupling factor BER93_RS13260 IPR001650 Helicase, C-terminal BER93_RS13260 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS13260 IPR005118 Transcription-repair-coupling factor, C-terminal domain BER93_RS13265 IPR036187 DNA mismatch repair protein MutS, core domain superfamily BER93_RS13265 IPR000432 DNA mismatch repair protein MutS, C-terminal BER93_RS13265 IPR007695 DNA mismatch repair protein MutS-like, N-terminal BER93_RS13265 IPR007861 DNA mismatch repair protein MutS, clamp BER93_RS13265 IPR017261 DNA mismatch repair protein MutS/MSH BER93_RS13265 IPR007860 DNA mismatch repair protein MutS, connector domain BER93_RS13265 IPR007696 DNA mismatch repair protein MutS, core BER93_RS13265 IPR036678 MutS, connector domain superfamily BER93_RS13265 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13265 IPR005748 DNA mismatch repair protein MutS BER93_RS13265 IPR016151 DNA mismatch repair protein MutS, N-terminal BER93_RS13270 IPR019794 Peroxidase, active site BER93_RS13270 IPR019793 Peroxidases heam-ligand binding site BER93_RS13270 IPR002016 Haem peroxidase BER93_RS13270 IPR000763 Catalase-peroxidase haem BER93_RS13270 IPR010255 Haem peroxidase superfamily BER93_RS13280 IPR002559 Transposase, IS4-like BER93_RS13285 IPR009057 Homeobox-like domain superfamily BER93_RS13285 IPR002514 Transposase IS3/IS911family BER93_RS13305 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site BER93_RS13305 IPR029033 Histidine phosphatase superfamily BER93_RS13305 IPR013078 Histidine phosphatase superfamily, clade-1 BER93_RS13305 IPR005952 Phosphoglycerate mutase 1 BER93_RS13310 IPR007581 Endonuclease V BER93_RS13340 IPR025299 CstA, C-terminal domain BER93_RS13340 IPR003706 CstA, N-terminal domain BER93_RS13345 IPR007423 Selenoprotein, putative BER93_RS13350 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BER93_RS13350 IPR023214 HAD superfamily BER93_RS13350 IPR006439 HAD hydrolase, subfamily IA BER93_RS13350 IPR036412 HAD-like superfamily BER93_RS13350 IPR041492 Haloacid dehalogenase-like hydrolase BER93_RS13365 IPR025877 MobA-like NTP transferase BER93_RS13365 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS13375 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BER93_RS13375 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily BER93_RS13375 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily BER93_RS13375 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding BER93_RS13375 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily BER93_RS13375 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding BER93_RS13375 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily BER93_RS13375 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BER93_RS13380 IPR016132 Phytochrome chromophore attachment domain BER93_RS13380 IPR029787 Nucleotide cyclase BER93_RS13380 IPR000160 GGDEF domain BER93_RS13380 IPR029016 GAF-like domain superfamily BER93_RS13380 IPR003018 GAF domain BER93_RS13380 IPR035919 EAL domain superfamily BER93_RS13380 IPR001633 EAL domain BER93_RS13380 IPR001294 Phytochrome BER93_RS13380 IPR013515 Phytochrome, central region BER93_RS13385 IPR012340 Nucleic acid-binding, OB-fold BER93_RS13385 IPR000424 Primosome PriB/single-strand DNA-binding BER93_RS13385 IPR011344 Single-stranded DNA-binding protein BER93_RS13395 IPR033749 Polyprenyl synthetase, conserved site BER93_RS13395 IPR008949 Isoprenoid synthase domain superfamily BER93_RS13395 IPR000092 Polyprenyl synthetase BER93_RS13405 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase BER93_RS13405 IPR036615 Mur ligase, C-terminal domain superfamily BER93_RS13405 IPR036565 Mur-like, catalytic domain superfamily BER93_RS13405 IPR018109 Folylpolyglutamate synthetase, conserved site BER93_RS13405 IPR013221 Mur ligase, central BER93_RS13420 IPR018042 Aspartate kinase, conserved site BER93_RS13420 IPR001341 Aspartate kinase BER93_RS13420 IPR001048 Aspartate/glutamate/uridylate kinase BER93_RS13420 IPR005260 Aspartate kinase, monofunctional class BER93_RS13420 IPR036393 Acetylglutamate kinase-like superfamily BER93_RS13420 IPR002912 ACT domain BER93_RS13420 IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain BER93_RS13430 IPR003719 Phenazine biosynthesis PhzF protein BER93_RS13440 IPR019904 Peroxiredoxin OsmC BER93_RS13440 IPR036102 OsmC/Ohr superfamily BER93_RS13440 IPR003718 OsmC/Ohr family BER93_RS13440 IPR015946 K homology domain-like, alpha/beta BER93_RS13445 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding BER93_RS13445 IPR006130 Aspartate/ornithine carbamoyltransferase BER93_RS13445 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily BER93_RS13445 IPR002082 Aspartate carbamoyltransferase BER93_RS13445 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain BER93_RS13450 IPR006641 YqgF/RNase H-like domain BER93_RS13450 IPR037027 YqgF/RNase H-like domain superfamily BER93_RS13450 IPR012337 Ribonuclease H-like superfamily BER93_RS13450 IPR005227 Putative pre-16S rRNA nuclease BER93_RS13455 IPR003774 Protein of unknown function UPF0301 BER93_RS13480 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13480 IPR006321 Pilus retraction protein PilT BER93_RS13480 IPR001482 Type II/IV secretion system protein BER93_RS13485 IPR006321 Pilus retraction protein PilT BER93_RS13485 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13485 IPR001482 Type II/IV secretion system protein BER93_RS13485 IPR003593 AAA+ ATPase domain BER93_RS13490 IPR011078 Pyridoxal phosphate homeostasis protein BER93_RS13490 IPR029066 PLP-binding barrel BER93_RS13490 IPR001608 Alanine racemase, N-terminal BER93_RS13495 IPR000304 Pyrroline-5-carboxylate reductase BER93_RS13495 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily BER93_RS13495 IPR036291 NAD(P)-binding domain superfamily BER93_RS13495 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal BER93_RS13495 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain BER93_RS13525 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS13525 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS13525 IPR030489 Transcription regulator Rrf2-type, conserved site BER93_RS13525 IPR000944 Transcription regulator Rrf2-type BER93_RS13530 IPR010231 SUF system FeS cluster assembly, SufB BER93_RS13530 IPR037284 SUF system FeS cluster assembly, SufBD superfamily BER93_RS13530 IPR000825 SUF system FeS cluster assembly, SufBD BER93_RS13535 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13535 IPR010230 FeS cluster assembly SUF system, ATPase SufC BER93_RS13535 IPR017871 ABC transporter, conserved site BER93_RS13535 IPR003439 ABC transporter-like BER93_RS13535 IPR003593 AAA+ ATPase domain BER93_RS13540 IPR037284 SUF system FeS cluster assembly, SufBD superfamily BER93_RS13540 IPR011542 SUF system FeS cluster assembly, SufD BER93_RS13540 IPR000825 SUF system FeS cluster assembly, SufBD BER93_RS13545 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS13545 IPR010970 Cysteine desulfurase, SufS BER93_RS13545 IPR016454 Cysteine desulfurase BER93_RS13545 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS13545 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS13545 IPR000192 Aminotransferase class V domain BER93_RS13545 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BER93_RS13555 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily BER93_RS13555 IPR017941 Rieske [2Fe-2S] iron-sulphur domain BER93_RS13560 IPR010105 TonB-dependent siderophore receptor BER93_RS13560 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS13560 IPR039423 TonB-dependent receptor-like BER93_RS13560 IPR030148 Catecholate siderophore receptor Fiu BER93_RS13560 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS13560 IPR012910 TonB-dependent receptor, plug domain BER93_RS13560 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS13565 IPR006620 Prolyl 4-hydroxylase, alpha subunit BER93_RS13565 IPR023550 PKHD-type hydroxylase BER93_RS13565 IPR041097 PKHD-type hydroxylase C-terminal domain BER93_RS13565 IPR005123 Oxoglutarate/iron-dependent dioxygenase BER93_RS13575 IPR009057 Homeobox-like domain superfamily BER93_RS13575 IPR002514 Transposase IS3/IS911family BER93_RS13595 IPR004509 Competence protein ComEA, helix-hairpin-helix domain BER93_RS13595 IPR010994 RuvA domain 2-like BER93_RS13600 IPR036264 Bacterial exopeptidase dimerisation domain BER93_RS13600 IPR011650 Peptidase M20, dimerisation domain BER93_RS13600 IPR002933 Peptidase M20 BER93_RS13600 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria BER93_RS13610 IPR002575 Aminoglycoside phosphotransferase BER93_RS13610 IPR011009 Protein kinase-like domain superfamily BER93_RS13615 IPR005835 Nucleotidyl transferase domain BER93_RS13615 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS13625 IPR013317 Chromosomal replication initiator protein DnaA BER93_RS13625 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae BER93_RS13625 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13625 IPR017788 DnaA regulatory inactivator Hda BER93_RS13625 IPR020591 Chromosomal replication control, initiator DnaA-like BER93_RS13630 IPR002549 Transmembrane protein TqsA-like BER93_RS13640 IPR010918 PurM-like, C-terminal domain BER93_RS13640 IPR036676 PurM-like, C-terminal domain superfamily BER93_RS13640 IPR016188 PurM-like, N-terminal domain BER93_RS13640 IPR036921 PurM-like, N-terminal domain superfamily BER93_RS13640 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase BER93_RS13645 IPR036477 Formyl transferase, N-terminal domain superfamily BER93_RS13645 IPR001555 Phosphoribosylglycinamide formyltransferase, active site BER93_RS13645 IPR002376 Formyl transferase, N-terminal BER93_RS13645 IPR004607 Phosphoribosylglycinamide formyltransferase BER93_RS13670 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta BER93_RS13670 IPR036968 Enolpyruvate transferase domain superfamily BER93_RS13670 IPR001986 Enolpyruvate transferase domain BER93_RS13670 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase BER93_RS13675 IPR036065 BolA-like superfamily BER93_RS13675 IPR002634 BolA protein BER93_RS13680 IPR001347 Sugar isomerase (SIS) BER93_RS13680 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type BER93_RS13680 IPR000644 CBS domain BER93_RS13680 IPR035474 KpsF-like, SIS domain BER93_RS13685 IPR036412 HAD-like superfamily BER93_RS13685 IPR010023 KdsC family BER93_RS13685 IPR023214 HAD superfamily BER93_RS13695 IPR014340 Lipopolysaccharide export system protein LptA BER93_RS13695 IPR005653 Organic solvent tolerance-like, N-terminal BER93_RS13700 IPR030921 LPS export ABC transporter, ATP-binding protein LptB BER93_RS13700 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13700 IPR017871 ABC transporter, conserved site BER93_RS13700 IPR003593 AAA+ ATPase domain BER93_RS13700 IPR003439 ABC transporter-like BER93_RS13705 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily BER93_RS13705 IPR007046 RNA polymerase sigma factor 54, core-binding domain BER93_RS13705 IPR007634 RNA polymerase sigma factor 54, DNA-binding BER93_RS13705 IPR000394 RNA polymerase sigma factor 54 BER93_RS13710 IPR036567 Ribosome hibernation promotion factor-like BER93_RS13710 IPR003489 Ribosome hibernation promoting factor/RaiA BER93_RS13715 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN BER93_RS13715 IPR002178 PTS EIIA type-2 domain BER93_RS13715 IPR016152 Phosphotransferase/anion transporter BER93_RS13720 IPR011104 HPr kinase/phosphorylase, C-terminal BER93_RS13720 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal BER93_RS13720 IPR003755 HPr(Ser) kinase/phosphorylase BER93_RS13720 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily BER93_RS13725 IPR005337 RapZ-like family BER93_RS13725 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13735 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BER93_RS13735 IPR035895 HPr-like superfamily BER93_RS13735 IPR000032 Phosphocarrier protein HPr-like BER93_RS13735 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BER93_RS13740 IPR036637 Phosphohistidine domain superfamily BER93_RS13740 IPR006318 Phosphotransferase system, enzyme I-like BER93_RS13740 IPR008731 Phosphotransferase system, enzyme I N-terminal BER93_RS13740 IPR036618 PtsI, HPr-binding domain superfamily BER93_RS13740 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily BER93_RS13740 IPR008279 PEP-utilising enzyme, mobile domain BER93_RS13740 IPR018274 PEP-utilising enzyme, active site BER93_RS13740 IPR040442 Pyruvate kinase-like domain superfamily BER93_RS13740 IPR023151 PEP-utilising enzyme, conserved site BER93_RS13740 IPR000121 PEP-utilising enzyme, C-terminal BER93_RS13740 IPR024692 Phosphotransferase system, enzyme I BER93_RS13745 IPR006667 SLC41 divalent cation transporters, integral membrane domain BER93_RS13745 IPR000644 CBS domain BER93_RS13745 IPR006668 Magnesium transporter, MgtE intracellular domain BER93_RS13745 IPR038076 MgtE, N-terminal domain superfamily BER93_RS13745 IPR038048 Magnesium transporter MgtE, transmembrane domain BER93_RS13745 IPR006669 Magnesium transporter MgtE BER93_RS13745 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily BER93_RS13750 IPR002514 Transposase IS3/IS911family BER93_RS13750 IPR009057 Homeobox-like domain superfamily BER93_RS13780 IPR003836 Glucokinase BER93_RS13795 IPR017853 Glycoside hydrolase superfamily BER93_RS13795 IPR041704 CFLE, GH18 catalytic domain BER93_RS13795 IPR011583 Chitinase II BER93_RS13795 IPR029070 Chitinase insertion domain superfamily BER93_RS13795 IPR001223 Glycoside hydrolase family 18, catalytic domain BER93_RS13795 IPR018392 LysM domain BER93_RS13795 IPR036779 LysM domain superfamily BER93_RS13800 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal BER93_RS13800 IPR029018 Beta-hexosaminidase-like, domain 2 BER93_RS13800 IPR017853 Glycoside hydrolase superfamily BER93_RS13800 IPR015883 Glycoside hydrolase family 20, catalytic domain BER93_RS13800 IPR025705 Beta-hexosaminidase BER93_RS13800 IPR011658 PA14 domain BER93_RS13800 IPR037524 PA14/GLEYA domain BER93_RS13810 IPR001764 Glycoside hydrolase, family 3, N-terminal BER93_RS13810 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily BER93_RS13810 IPR011658 PA14 domain BER93_RS13810 IPR002772 Glycoside hydrolase family 3 C-terminal domain BER93_RS13810 IPR026891 Fibronectin type III-like domain BER93_RS13810 IPR017853 Glycoside hydrolase superfamily BER93_RS13810 IPR013783 Immunoglobulin-like fold BER93_RS13810 IPR037524 PA14/GLEYA domain BER93_RS13810 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily BER93_RS13815 IPR005074 Peptidase C39, bacteriocin processing BER93_RS13815 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13815 IPR003593 AAA+ ATPase domain BER93_RS13815 IPR011527 ABC transporter type 1, transmembrane domain BER93_RS13815 IPR036640 ABC transporter type 1, transmembrane domain superfamily BER93_RS13815 IPR003439 ABC transporter-like BER93_RS13815 IPR033838 Colicin V processing peptidase BER93_RS13815 IPR017871 ABC transporter, conserved site BER93_RS13815 IPR039421 Type I protein exporter BER93_RS13820 IPR009057 Homeobox-like domain superfamily BER93_RS13820 IPR002514 Transposase IS3/IS911family BER93_RS13825 IPR025948 HTH-like domain BER93_RS13825 IPR036397 Ribonuclease H superfamily BER93_RS13825 IPR012337 Ribonuclease H-like superfamily BER93_RS13825 IPR001584 Integrase, catalytic core BER93_RS13835 IPR002559 Transposase, IS4-like BER93_RS13840 IPR008490 Transposase InsH, N-terminal BER93_RS13840 IPR002559 Transposase, IS4-like BER93_RS13850 IPR001584 Integrase, catalytic core BER93_RS13850 IPR012337 Ribonuclease H-like superfamily BER93_RS13850 IPR036397 Ribonuclease H superfamily BER93_RS13850 IPR025948 HTH-like domain BER93_RS13855 IPR009057 Homeobox-like domain superfamily BER93_RS13855 IPR002514 Transposase IS3/IS911family BER93_RS13870 IPR014782 Peptidase M1, membrane alanine aminopeptidase BER93_RS13870 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase BER93_RS13870 IPR034016 Aminopeptidase N-type BER93_RS13870 IPR042097 Aminopeptidase N-like , N-terminal BER93_RS13875 IPR018220 Adenylosuccinate synthase, GTP-binding site BER93_RS13875 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13875 IPR033128 Adenylosuccinate synthase, active site BER93_RS13875 IPR042109 Adenylosuccinate synthetase, domain 1 BER93_RS13875 IPR042110 Adenylosuccinate synthetase, domain 2 BER93_RS13875 IPR042111 Adenylosuccinate synthetase, domain 3 BER93_RS13875 IPR001114 Adenylosuccinate synthetase BER93_RS13885 IPR010200 HflC BER93_RS13885 IPR036013 Band 7/SPFH domain superfamily BER93_RS13885 IPR001107 Band 7 domain BER93_RS13890 IPR036013 Band 7/SPFH domain superfamily BER93_RS13890 IPR001972 Stomatin family BER93_RS13890 IPR020980 Menbrane protein HflK, N-terminal BER93_RS13890 IPR010201 HflK BER93_RS13890 IPR001107 Band 7 domain BER93_RS13895 IPR011006 CheY-like superfamily BER93_RS13895 IPR001789 Signal transduction response regulator, receiver domain BER93_RS13900 IPR002939 Chaperone DnaJ, C-terminal BER93_RS13900 IPR036869 Chaperone J-domain superfamily BER93_RS13900 IPR001623 DnaJ domain BER93_RS13900 IPR018253 DnaJ domain, conserved site BER93_RS13900 IPR023859 DNA-binding protein, curved-DNA BER93_RS13900 IPR008971 HSP40/DnaJ peptide-binding BER93_RS13910 IPR037944 Peroxiredoxin-5-like BER93_RS13910 IPR013740 Redoxin BER93_RS13910 IPR036249 Thioredoxin-like superfamily BER93_RS13910 IPR013766 Thioredoxin domain BER93_RS13945 IPR002559 Transposase, IS4-like BER93_RS13955 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS13955 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS13955 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS13955 IPR010105 TonB-dependent siderophore receptor BER93_RS13955 IPR012910 TonB-dependent receptor, plug domain BER93_RS13960 IPR007400 PrpF protein BER93_RS13960 IPR012709 2-methyl-aconitate isomerase PrpF BER93_RS13965 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent BER93_RS13965 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER93_RS13965 IPR006249 Aconitase/Iron-responsive element-binding protein 2 BER93_RS13965 IPR036008 Aconitase, iron-sulfur domain BER93_RS13965 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain BER93_RS13965 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 BER93_RS13965 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain BER93_RS13970 IPR024176 Citrate synthase, bacterial-type BER93_RS13970 IPR016143 Citrate synthase-like, small alpha subdomain BER93_RS13970 IPR002020 Citrate synthase BER93_RS13970 IPR019810 Citrate synthase active site BER93_RS13970 IPR011278 2-methylcitrate synthase/citrate synthase type I BER93_RS13970 IPR016142 Citrate synthase-like, large alpha subdomain BER93_RS13970 IPR036969 Citrate synthase superfamily BER93_RS13975 IPR039556 ICL/PEPM domain BER93_RS13975 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site BER93_RS13975 IPR040442 Pyruvate kinase-like domain superfamily BER93_RS13975 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily BER93_RS13975 IPR012695 2-methylisocitrate lyase BER93_RS13980 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR BER93_RS13980 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS13980 IPR002197 DNA binding HTH domain, Fis-type BER93_RS13980 IPR009057 Homeobox-like domain superfamily BER93_RS13980 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_RS13980 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER93_RS13980 IPR025944 Sigma-54 interaction domain, conserved site BER93_RS13980 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal BER93_RS13980 IPR003593 AAA+ ATPase domain BER93_RS13995 IPR002559 Transposase, IS4-like BER93_RS13995 IPR008490 Transposase InsH, N-terminal BER93_RS14015 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14015 IPR015199 DNA polymerase III, delta subunit, C-terminal BER93_RS14015 IPR004622 DNA polymerase III, delta prime subunit BER93_RS14020 IPR003770 Endolytic murein transglycosylase BER93_RS14025 IPR015890 Chorismate-utilising enzyme, C-terminal BER93_RS14025 IPR010118 Para-aminobenzoate synthase/anthranilate synthase, component I BER93_RS14025 IPR006805 Anthranilate synthase component I, N-terminal BER93_RS14025 IPR005801 ADC synthase BER93_RS14025 IPR019999 Anthranilate synthase component I-like BER93_RS14030 IPR016039 Thiolase-like BER93_RS14030 IPR000794 Beta-ketoacyl synthase BER93_RS14030 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 BER93_RS14030 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER93_RS14030 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_RS14030 IPR014031 Beta-ketoacyl synthase, C-terminal BER93_RS14030 IPR018201 Beta-ketoacyl synthase, active site BER93_RS14035 IPR009081 Phosphopantetheine binding ACP domain BER93_RS14035 IPR003231 Acyl carrier protein (ACP) BER93_RS14035 IPR006162 Phosphopantetheine attachment site BER93_RS14035 IPR036736 ACP-like superfamily BER93_RS14040 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS14040 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS14040 IPR036291 NAD(P)-binding domain superfamily BER93_RS14040 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase BER93_RS14045 IPR014043 Acyl transferase BER93_RS14045 IPR001227 Acyl transferase domain superfamily BER93_RS14045 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BER93_RS14045 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type BER93_RS14045 IPR024925 Malonyl CoA-acyl carrier protein transacylase BER93_RS14045 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BER93_RS14050 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 BER93_RS14050 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal BER93_RS14050 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER93_RS14050 IPR016039 Thiolase-like BER93_RS14055 IPR011332 Zinc-binding ribosomal protein BER93_RS14055 IPR002677 Ribosomal protein L32p BER93_RS14060 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria BER93_RS14060 IPR003772 Large ribosomal RNA subunit accumulation protein YceD BER93_RS14065 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein BER93_RS14065 IPR029001 Inosine triphosphate pyrophosphatase-like BER93_RS14075 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS14085 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14085 IPR041628 ChlI/MoxR, AAA lid domain BER93_RS14085 IPR011703 ATPase, AAA-3 BER93_RS14095 IPR025403 Domain of unknown function DUF4129 BER93_RS14095 IPR038765 Papain-like cysteine peptidase superfamily BER93_RS14095 IPR021878 Protein-glutamine gamma-glutamyltransferase TgpA, N-terminal BER93_RS14095 IPR002931 Transglutaminase-like BER93_RS14105 IPR011146 HIT-like domain BER93_RS14105 IPR036265 HIT-like superfamily BER93_RS14105 IPR001310 Histidine triad (HIT) protein BER93_RS14105 IPR019808 Histidine triad, conserved site BER93_RS14110 IPR023628 Recombination protein RecR, C4-type zinc finger BER93_RS14110 IPR015967 Recombination protein RecR, conserved site BER93_RS14110 IPR006171 TOPRIM domain BER93_RS14110 IPR034137 RecR, TOPRIM domain BER93_RS14110 IPR023627 Recombination protein RecR BER93_RS14110 IPR000093 DNA recombination protein RecR BER93_RS14115 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily BER93_RS14115 IPR004401 Nucleoid-associated protein YbaB/EbfC family BER93_RS14120 IPR001270 ClpA/B family BER93_RS14120 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14120 IPR021029 DNA polymerase III, tau subunit, domain V BER93_RS14120 IPR012763 DNA polymerase III, subunit gamma/ tau BER93_RS14120 IPR022754 DNA polymerase III, gamma subunit, domain III BER93_RS14120 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV BER93_RS14120 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal BER93_RS14120 IPR003593 AAA+ ATPase domain BER93_RS14120 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily BER93_RS14135 IPR003448 Molybdopterin biosynthesis MoaE BER93_RS14135 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily BER93_RS14145 IPR023045 Molybdenum cofactor biosynthesis C BER93_RS14145 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily BER93_RS14145 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain BER93_RS14150 IPR013483 Molybdenum cofactor biosynthesis protein A BER93_RS14150 IPR006638 Elp3/MiaB/NifB BER93_RS14150 IPR010505 Molybdenum cofactor synthesis C-terminal BER93_RS14150 IPR013785 Aldolase-type TIM barrel BER93_RS14150 IPR007197 Radical SAM BER93_RS14150 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site BER93_RS14155 IPR001279 Metallo-beta-lactamase BER93_RS14155 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BER93_RS14155 IPR013471 Ribonuclease Z/BN BER93_RS14160 IPR022826 3-deoxy-D-manno-octulosonic acid kinase BER93_RS14160 IPR011009 Protein kinase-like domain superfamily BER93_RS14165 IPR002201 Glycosyl transferase, family 9 BER93_RS14180 IPR001932 PPM-type phosphatase domain BER93_RS14180 IPR015655 Protein phosphatase 2C family BER93_RS14180 IPR036457 PPM-type phosphatase domain superfamily BER93_RS14185 IPR013520 Exonuclease, RNase T/DNA polymerase III BER93_RS14185 IPR006309 DNA polymerase 3, epsilon subunit BER93_RS14185 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain BER93_RS14185 IPR012337 Ribonuclease H-like superfamily BER93_RS14185 IPR036397 Ribonuclease H superfamily BER93_RS14190 IPR036397 Ribonuclease H superfamily BER93_RS14190 IPR012337 Ribonuclease H-like superfamily BER93_RS14190 IPR002156 Ribonuclease H domain BER93_RS14190 IPR022892 Ribonuclease HI BER93_RS14200 IPR017782 Hydroxyacylglutathione hydrolase BER93_RS14200 IPR001279 Metallo-beta-lactamase BER93_RS14200 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BER93_RS14200 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain BER93_RS14200 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain BER93_RS14205 IPR018392 LysM domain BER93_RS14205 IPR007921 CHAP domain BER93_RS14205 IPR036779 LysM domain superfamily BER93_RS14205 IPR038765 Papain-like cysteine peptidase superfamily BER93_RS14215 IPR010979 Ribosomal protein S13-like, H2TH BER93_RS14215 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding BER93_RS14215 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain BER93_RS14215 IPR020629 Formamidopyrimidine-DNA glycosylase BER93_RS14215 IPR035937 MutM-like, N-terminal BER93_RS14215 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site BER93_RS14215 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type BER93_RS14215 IPR010663 Zinc finger, FPG/IleRS-type BER93_RS14220 IPR011042 Six-bladed beta-propeller, TolB-like BER93_RS14220 IPR029058 Alpha/Beta hydrolase fold BER93_RS14220 IPR011659 WD40-like Beta Propeller BER93_RS14220 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_RS14220 IPR002469 Dipeptidylpeptidase IV, N-terminal domain BER93_RS14225 IPR004814 Oligopeptide transporter OPT BER93_RS14225 IPR004813 Oligopeptide transporter, OPT superfamily BER93_RS14240 IPR002559 Transposase, IS4-like BER93_RS14255 IPR023073 DNA polymerase, error-prone BER93_RS14255 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain BER93_RS14255 IPR004805 DNA polymerase III, alpha subunit BER93_RS14255 IPR003141 Polymerase/histidinol phosphatase, N-terminal BER93_RS14255 IPR004013 PHP domain BER93_RS14255 IPR040982 DNA polymerase III alpha subunit finger domain BER93_RS14255 IPR029460 DNA polymerase, helix-hairpin-helix motif BER93_RS14255 IPR016195 Polymerase/histidinol phosphatase-like BER93_RS14270 IPR006200 Transcription regulator LexA BER93_RS14270 IPR039418 LexA-like BER93_RS14270 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS14270 IPR036286 LexA/Signal peptidase-like superfamily BER93_RS14270 IPR006199 LexA repressor, DNA-binding domain BER93_RS14270 IPR006197 Peptidase S24, LexA-like BER93_RS14270 IPR015927 Peptidase S24/S26A/S26B/S26C BER93_RS14270 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS14280 IPR002559 Transposase, IS4-like BER93_RS14305 IPR006311 Twin-arginine translocation pathway, signal sequence BER93_RS14305 IPR012675 Beta-grasp domain superfamily BER93_RS14305 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site BER93_RS14305 IPR036010 2Fe-2S ferredoxin-like superfamily BER93_RS14305 IPR036884 [2Fe-2S]-binding domain superfamily BER93_RS14305 IPR002888 [2Fe-2S]-binding BER93_RS14305 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain BER93_RS14310 IPR036318 FAD-binding, type PCMH-like superfamily BER93_RS14310 IPR005107 CO dehydrogenase flavoprotein, C-terminal BER93_RS14310 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily BER93_RS14310 IPR002346 Molybdopterin dehydrogenase, FAD-binding BER93_RS14310 IPR016166 FAD-binding domain, PCMH-type BER93_RS14310 IPR016169 FAD-binding, type PCMH, subdomain 2 BER93_RS14315 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily BER93_RS14315 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily BER93_RS14315 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding BER93_RS14315 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BER93_RS14320 IPR036291 NAD(P)-binding domain superfamily BER93_RS14320 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS14320 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS14330 IPR008490 Transposase InsH, N-terminal BER93_RS14330 IPR002559 Transposase, IS4-like BER93_RS14340 IPR002514 Transposase IS3/IS911family BER93_RS14340 IPR009057 Homeobox-like domain superfamily BER93_RS14355 IPR041552 UvrA DNA-binding domain BER93_RS14355 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14355 IPR017871 ABC transporter, conserved site BER93_RS14365 IPR002559 Transposase, IS4-like BER93_RS14365 IPR008490 Transposase InsH, N-terminal BER93_RS14390 IPR027304 Trigger factor/SurA domain superfamily BER93_RS14390 IPR008881 Trigger factor, ribosome-binding, bacterial BER93_RS14390 IPR037041 Trigger factor, C-terminal domain superfamily BER93_RS14390 IPR008880 Trigger factor, C-terminal BER93_RS14390 IPR005215 Trigger factor BER93_RS14390 IPR036611 Trigger factor ribosome-binding domain superfamily BER93_RS14395 IPR001907 ATP-dependent Clp protease proteolytic subunit BER93_RS14395 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS14395 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BER93_RS14395 IPR033135 ClpP, histidine active site BER93_RS14395 IPR018215 ClpP, Ser active site BER93_RS14400 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14400 IPR010603 Zinc finger, ClpX C4-type BER93_RS14400 IPR038366 Zinc finger, ClpX C4-type superfamily BER93_RS14400 IPR003959 ATPase, AAA-type, core BER93_RS14400 IPR019489 Clp ATPase, C-terminal BER93_RS14400 IPR003593 AAA+ ATPase domain BER93_RS14400 IPR004487 Clp protease, ATP-binding subunit ClpX BER93_RS14405 IPR003593 AAA+ ATPase domain BER93_RS14405 IPR004815 Lon protease, bacterial/eukaryotic-type BER93_RS14405 IPR003959 ATPase, AAA-type, core BER93_RS14405 IPR027543 Lon protease, bacterial BER93_RS14405 IPR008269 Peptidase S16, Lon proteolytic domain BER93_RS14405 IPR027065 Lon protease BER93_RS14405 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS14405 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14405 IPR008268 Peptidase S16, active site BER93_RS14405 IPR015947 PUA-like superfamily BER93_RS14405 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS14405 IPR003111 Lon, substrate-binding domain BER93_RS14410 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily BER93_RS14410 IPR000119 Histone-like DNA-binding protein BER93_RS14410 IPR020816 Histone-like DNA-binding protein, conserved site BER93_RS14430 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site BER93_RS14430 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type BER93_RS14455 IPR024924 7-carboxy-7-deazaguanine synthase-like BER93_RS14455 IPR007197 Radical SAM BER93_RS14455 IPR013785 Aldolase-type TIM barrel BER93_RS14465 IPR006690 Outer membrane protein, OmpA-like, conserved site BER93_RS14465 IPR036737 OmpA-like domain superfamily BER93_RS14465 IPR006665 OmpA-like domain BER93_RS14465 IPR006664 Outer membrane protein, bacterial BER93_RS14465 IPR039001 Peptidoglycan-associated lipoprotein BER93_RS14465 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal BER93_RS14470 IPR011042 Six-bladed beta-propeller, TolB-like BER93_RS14470 IPR011659 WD40-like Beta Propeller BER93_RS14470 IPR014167 Tol-Pal system protein TolB BER93_RS14470 IPR036752 TolB, N-terminal domain superfamily BER93_RS14470 IPR007195 TolB, N-terminal BER93_RS14480 IPR014168 Tol-Pal system protein TolR BER93_RS14480 IPR003400 Biopolymer transport protein ExbD/TolR BER93_RS14485 IPR002898 MotA/TolQ/ExbB proton channel BER93_RS14485 IPR014163 Tol-Pal system, TolQ BER93_RS14490 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site BER93_RS14490 IPR029069 HotDog domain superfamily BER93_RS14490 IPR006683 Thioesterase domain BER93_RS14490 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase BER93_RS14490 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family BER93_RS14495 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS14495 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS14495 IPR008823 RuvB C-terminal winged helix domain BER93_RS14495 IPR003593 AAA+ ATPase domain BER93_RS14495 IPR041445 RuvB, AAA lid domain BER93_RS14495 IPR004605 DNA helicase, Holliday junction RuvB-type BER93_RS14495 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14495 IPR008824 RuvB-like P-loop domain BER93_RS14500 IPR023051 Potassium uptake protein, low affinity, Kup BER93_RS14500 IPR003855 Potassium transporter BER93_RS14505 IPR036267 RuvA, C-terminal domain superfamily BER93_RS14505 IPR010994 RuvA domain 2-like BER93_RS14505 IPR011114 Holliday junction DNA helicase RuvA, C-terminal BER93_RS14505 IPR000085 Bacterial DNA recombination protein RuvA BER93_RS14505 IPR012340 Nucleic acid-binding, OB-fold BER93_RS14505 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial BER93_RS14505 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 BER93_RS14510 IPR012337 Ribonuclease H-like superfamily BER93_RS14510 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site BER93_RS14510 IPR002176 Crossover junction endodeoxyribonuclease RuvC BER93_RS14510 IPR036397 Ribonuclease H superfamily BER93_RS14515 IPR017856 Integrase-like, N-terminal BER93_RS14515 IPR002876 Transcriptional regulator TACO1-like BER93_RS14515 IPR026564 Transcriptional regulator TACO1-like, domain 3 BER93_RS14515 IPR029072 YebC-like BER93_RS14530 IPR012340 Nucleic acid-binding, OB-fold BER93_RS14530 IPR006195 Aminoacyl-tRNA synthetase, class II BER93_RS14530 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type BER93_RS14530 IPR004115 GAD-like domain superfamily BER93_RS14530 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb BER93_RS14530 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) BER93_RS14530 IPR029351 GAD domain BER93_RS14530 IPR004524 Aspartate-tRNA ligase, type 1 BER93_RS14545 IPR023346 Lysozyme-like domain superfamily BER93_RS14545 IPR031304 Transglycosylase SLT domain 2 BER93_RS14545 IPR011757 Lytic transglycosylase MltB BER93_RS14550 IPR032781 ABC-transporter extension domain BER93_RS14550 IPR003439 ABC transporter-like BER93_RS14550 IPR003593 AAA+ ATPase domain BER93_RS14550 IPR017871 ABC transporter, conserved site BER93_RS14550 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14555 IPR010105 TonB-dependent siderophore receptor BER93_RS14555 IPR010917 TonB-dependent receptor, conserved site BER93_RS14555 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS14555 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS14555 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS14555 IPR012910 TonB-dependent receptor, plug domain BER93_RS14555 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS14570 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS14570 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS14570 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS14570 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS14570 IPR012910 TonB-dependent receptor, plug domain BER93_RS14570 IPR010105 TonB-dependent siderophore receptor BER93_RS14570 IPR010917 TonB-dependent receptor, conserved site BER93_RS14575 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS14575 IPR012910 TonB-dependent receptor, plug domain BER93_RS14575 IPR010917 TonB-dependent receptor, conserved site BER93_RS14575 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS14575 IPR010101 TonB-dependent vitamin B12 transporter BtuB BER93_RS14575 IPR010916 TonB box, conserved site BER93_RS14575 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS14575 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS14580 IPR003148 Regulator of K+ conductance, N-terminal BER93_RS14580 IPR004771 K+/H+ exchanger BER93_RS14580 IPR006153 Cation/H+ exchanger BER93_RS14580 IPR038770 Sodium/solute symporter superfamily BER93_RS14580 IPR036291 NAD(P)-binding domain superfamily BER93_RS14590 IPR008490 Transposase InsH, N-terminal BER93_RS14610 IPR004840 Amino acid permease, conserved site BER93_RS14610 IPR004841 Amino acid permease/ SLC12A domain BER93_RS14615 IPR008490 Transposase InsH, N-terminal BER93_RS14620 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS14620 IPR003660 HAMP domain BER93_RS14620 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site BER93_RS14620 IPR004090 Chemotaxis methyl-accepting receptor BER93_RS14620 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BER93_RS14620 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding BER93_RS14630 IPR029058 Alpha/Beta hydrolase fold BER93_RS14630 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS14630 IPR002410 Peptidase S33 BER93_RS14630 IPR005945 Proline-specific peptidase BER93_RS14635 IPR000792 Transcription regulator LuxR, C-terminal BER93_RS14635 IPR011006 CheY-like superfamily BER93_RS14635 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS14640 IPR004841 Amino acid permease/ SLC12A domain BER93_RS14645 IPR009003 Peptidase S1, PA clan BER93_RS14670 IPR016185 Pre-ATP-grasp domain superfamily BER93_RS14670 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain BER93_RS14695 IPR007157 PspA/IM30 BER93_RS14710 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative BER93_RS14710 IPR000659 Pyridoxamine 5'-phosphate oxidase BER93_RS14710 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site BER93_RS14710 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal BER93_RS14710 IPR012349 FMN-binding split barrel BER93_RS14715 IPR023000 Shikimate kinase, conserved site BER93_RS14715 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14715 IPR031322 Shikimate kinase/gluconokinase BER93_RS14715 IPR000623 Shikimate kinase/Threonine synthase-like 1 BER93_RS14720 IPR016037 3-dehydroquinate synthase AroB BER93_RS14720 IPR030963 3-dehydroquinate synthase family BER93_RS14720 IPR030960 3-dehydroquinate synthase domain BER93_RS14730 IPR006361 Uroporphyrinogen decarboxylase HemE BER93_RS14730 IPR000257 Uroporphyrinogen decarboxylase (URO-D) BER93_RS14730 IPR038071 UROD/MetE-like superfamily BER93_RS14735 IPR023721 Multidrug resistance protein MdtD BER93_RS14735 IPR011701 Major facilitator superfamily BER93_RS14735 IPR020846 Major facilitator superfamily domain BER93_RS14735 IPR036259 MFS transporter superfamily BER93_RS14735 IPR004638 Drug resistance transporter EmrB-like BER93_RS14740 IPR002559 Transposase, IS4-like BER93_RS14740 IPR008490 Transposase InsH, N-terminal BER93_RS14745 IPR036641 HPT domain superfamily BER93_RS14745 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS14745 IPR011006 CheY-like superfamily BER93_RS14745 IPR003660 HAMP domain BER93_RS14745 IPR033414 Periplasmic sensor domain BER93_RS14745 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS14745 IPR001789 Signal transduction response regulator, receiver domain BER93_RS14745 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS14745 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS14745 IPR005467 Histidine kinase domain BER93_RS14745 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS14745 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS14750 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS14750 IPR029151 Periplasmic sensor-like domain superfamily BER93_RS14750 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS14750 IPR001789 Signal transduction response regulator, receiver domain BER93_RS14750 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS14750 IPR005467 Histidine kinase domain BER93_RS14750 IPR015387 LuxQ, periplasmic BER93_RS14750 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS14750 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS14750 IPR011006 CheY-like superfamily BER93_RS14770 IPR011006 CheY-like superfamily BER93_RS14770 IPR001789 Signal transduction response regulator, receiver domain BER93_RS14775 IPR001789 Signal transduction response regulator, receiver domain BER93_RS14775 IPR001610 PAC motif BER93_RS14775 IPR000700 PAS-associated, C-terminal BER93_RS14775 IPR035965 PAS domain superfamily BER93_RS14775 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS14775 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS14775 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS14775 IPR005467 Histidine kinase domain BER93_RS14775 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS14775 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS14775 IPR000014 PAS domain BER93_RS14775 IPR011006 CheY-like superfamily BER93_RS14805 IPR018060 DNA binding HTH domain, AraC-type BER93_RS14805 IPR018062 HTH domain AraC-type, conserved site BER93_RS14815 IPR008523 Protein of unknown function DUF805 BER93_RS14820 IPR003593 AAA+ ATPase domain BER93_RS14820 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain BER93_RS14820 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS14820 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS14820 IPR004504 DNA repair protein RadA BER93_RS14820 IPR041166 LapB, rubredoxin metal binding domain BER93_RS14820 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14830 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes BER93_RS14830 IPR014210 Cytochrome o ubiquinol oxidase subunit IV BER93_RS14835 IPR000298 Cytochrome c oxidase subunit III-like BER93_RS14835 IPR035973 Cytochrome c oxidase subunit III-like superfamily BER93_RS14835 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle BER93_RS14835 IPR014206 Cytochrome o ubiquinol oxidase, subunit III BER93_RS14835 IPR033946 Ubiquinol oxidase subunit III domain BER93_RS14835 IPR024791 Cytochrome c oxidase subunit III BER93_RS14840 IPR014207 Cytochrome o ubiquinol oxidase, subunit I BER93_RS14840 IPR000883 Cytochrome c oxidase subunit I BER93_RS14840 IPR036927 Cytochrome c oxidase-like, subunit I superfamily BER93_RS14840 IPR023616 Cytochrome c oxidase-like, subunit I domain BER93_RS14840 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site BER93_RS14845 IPR010514 COX aromatic rich motif BER93_RS14845 IPR008972 Cupredoxin BER93_RS14845 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain BER93_RS14845 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain BER93_RS14845 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily BER93_RS14845 IPR006333 Cytochrome o ubiquinol oxidase subunit II BER93_RS14845 IPR002429 Cytochrome c oxidase subunit II-like C-terminal BER93_RS14855 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase BER93_RS14860 IPR001872 Peptidase A8, signal peptidase II BER93_RS14865 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS14865 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding BER93_RS14865 IPR010663 Zinc finger, FPG/IleRS-type BER93_RS14865 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain BER93_RS14865 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain BER93_RS14865 IPR002301 Isoleucine-tRNA ligase BER93_RS14865 IPR023585 Isoleucine-tRNA ligase, type 1 BER93_RS14865 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding BER93_RS14865 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_RS14865 IPR002300 Aminoacyl-tRNA synthetase, class Ia BER93_RS14870 IPR015864 FAD synthetase BER93_RS14870 IPR023465 Riboflavin kinase domain superfamily BER93_RS14870 IPR002606 Riboflavin kinase, bacterial BER93_RS14870 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic BER93_RS14870 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS14870 IPR023468 Riboflavin kinase BER93_RS14875 IPR004268 Peptidoglycan biosynthesis protein MurJ BER93_RS14880 IPR036510 Ribosomal protein S20 superfamily BER93_RS14880 IPR002583 Ribosomal protein S20 BER93_RS14885 IPR035101 GTP-binding protein, Obg-type BER93_RS14885 IPR031167 OBG-type guanine nucleotide-binding (G) domain BER93_RS14885 IPR006169 GTP1/OBG domain BER93_RS14885 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14885 IPR006073 GTP binding domain BER93_RS14885 IPR036726 GTP1/OBG domain superfamily BER93_RS14885 IPR014100 GTP-binding protein Obg/CgtA BER93_RS14885 IPR006074 GTP1/OBG, conserved site BER93_RS14890 IPR018261 Ribosomal protein L27, conserved site BER93_RS14890 IPR001684 Ribosomal protein L27 BER93_RS14895 IPR018258 Ribosomal protein L21, conserved site BER93_RS14895 IPR028909 Ribosomal protein L21-like BER93_RS14895 IPR036164 L21-like superfamily BER93_RS14895 IPR001787 Ribosomal protein L21 BER93_RS14900 IPR041552 UvrA DNA-binding domain BER93_RS14900 IPR004602 UvrABC system subunit A BER93_RS14900 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS14900 IPR041102 UvrA, interaction domain BER93_RS14900 IPR017871 ABC transporter, conserved site BER93_RS14900 IPR003439 ABC transporter-like BER93_RS14905 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family BER93_RS14905 IPR029069 HotDog domain superfamily BER93_RS14915 IPR001753 Enoyl-CoA hydratase/isomerase BER93_RS14915 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS14920 IPR003703 Acyl-CoA thioesterase BER93_RS14920 IPR029069 HotDog domain superfamily BER93_RS14935 IPR013324 RNA polymerase sigma factor, region 3/4-like BER93_RS14935 IPR013325 RNA polymerase sigma factor, region 2 BER93_RS14935 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 BER93_RS14935 IPR007627 RNA polymerase sigma-70 region 2 BER93_RS14935 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site BER93_RS14935 IPR014284 RNA polymerase sigma-70 like domain BER93_RS14935 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS14935 IPR039425 RNA polymerase sigma-70 like BER93_RS14945 IPR017138 Aspartate/glutamate leucyltransferase BER93_RS14945 IPR030700 N-end rule aminoacyl transferase BER93_RS14945 IPR016181 Acyl-CoA N-acyltransferase BER93_RS14945 IPR007472 N-end rule aminoacyl transferase, C-terminal BER93_RS14945 IPR007471 N-end aminoacyl transferase, N-terminal BER93_RS14955 IPR008490 Transposase InsH, N-terminal BER93_RS14970 IPR002514 Transposase IS3/IS911family BER93_RS14970 IPR009057 Homeobox-like domain superfamily BER93_RS14975 IPR011054 Rudiment single hybrid motif BER93_RS14975 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase BER93_RS14975 IPR016185 Pre-ATP-grasp domain superfamily BER93_RS14975 IPR001509 NAD-dependent epimerase/dehydratase BER93_RS14975 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS14975 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type BER93_RS14975 IPR011761 ATP-grasp fold BER93_RS15005 IPR003265 HhH-GPD domain BER93_RS15005 IPR011257 DNA glycosylase BER93_RS15020 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS15020 IPR001789 Signal transduction response regulator, receiver domain BER93_RS15020 IPR000792 Transcription regulator LuxR, C-terminal BER93_RS15020 IPR011006 CheY-like superfamily BER93_RS15025 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS15025 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS15025 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain BER93_RS15035 IPR005526 Septum formation inhibitor MinC, C-terminal BER93_RS15035 IPR013033 Septum formation inhibitor MinC BER93_RS15035 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily BER93_RS15035 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal BER93_RS15035 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily BER93_RS15035 IPR007874 Septum formation inhibitor MinC, N-terminal BER93_RS15040 IPR010223 ATP binding protein MinD, bacterial-type BER93_RS15040 IPR025501 ATP binding protein MinD BER93_RS15040 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_RS15040 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15045 IPR005527 Cell division topological specificity factor MinE BER93_RS15045 IPR036707 Cell division topological specificity factor MinE superfamily BER93_RS15055 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS15055 IPR013727 Two-component sensor kinase, N-terminal BER93_RS15055 IPR003660 HAMP domain BER93_RS15055 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS15055 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS15055 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS15055 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS15055 IPR005467 Histidine kinase domain BER93_RS15060 IPR011006 CheY-like superfamily BER93_RS15060 IPR001867 OmpR/PhoB-type DNA-binding domain BER93_RS15060 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response BER93_RS15060 IPR001789 Signal transduction response regulator, receiver domain BER93_RS15060 IPR039420 Transcriptional regulatory protein WalR-like BER93_RS15060 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS15075 IPR040423 Phosphoethanolamine transferase BER93_RS15075 IPR017850 Alkaline-phosphatase-like, core domain superfamily BER93_RS15075 IPR000917 Sulfatase, N-terminal BER93_RS15075 IPR012549 Phosphoethanolamine transferase, N-terminal BER93_RS15095 IPR003437 Glycine dehydrogenase (decarboxylating) BER93_RS15095 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS15095 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS15095 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS15095 IPR020581 Glycine cleavage system P protein BER93_RS15100 IPR018028 Catalase, mono-functional, haem-containing BER93_RS15100 IPR024712 Catalase, mono-functional, haem-containing, clade 2 BER93_RS15100 IPR029062 Class I glutamine amidotransferase-like BER93_RS15100 IPR037060 Catalase core domain superfamily BER93_RS15100 IPR002226 Catalase haem-binding site BER93_RS15100 IPR010582 Catalase immune-responsive domain BER93_RS15100 IPR041399 Large catalase, C-terminal domain BER93_RS15100 IPR020835 Catalase superfamily BER93_RS15100 IPR011614 Catalase core domain BER93_RS15100 IPR024708 Catalase active site BER93_RS15110 IPR018060 DNA binding HTH domain, AraC-type BER93_RS15110 IPR037923 Transcription regulator HTH-like BER93_RS15110 IPR009057 Homeobox-like domain superfamily BER93_RS15110 IPR014710 RmlC-like jelly roll fold BER93_RS15110 IPR003313 AraC-type arabinose-binding/dimerisation domain BER93_RS15120 IPR002559 Transposase, IS4-like BER93_RS15140 IPR008490 Transposase InsH, N-terminal BER93_RS15155 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS15155 IPR010105 TonB-dependent siderophore receptor BER93_RS15155 IPR010917 TonB-dependent receptor, conserved site BER93_RS15155 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS15155 IPR010916 TonB box, conserved site BER93_RS15155 IPR011662 Secretin/TonB, short N-terminal domain BER93_RS15155 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS15155 IPR012910 TonB-dependent receptor, plug domain BER93_RS15165 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal BER93_RS15165 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like BER93_RS15165 IPR022770 Ferric iron reductase FhuF domain BER93_RS15170 IPR023692 Multidrug resistance protein MdtG BER93_RS15170 IPR020846 Major facilitator superfamily domain BER93_RS15170 IPR011701 Major facilitator superfamily BER93_RS15170 IPR036259 MFS transporter superfamily BER93_RS15170 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG BER93_RS15175 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like BER93_RS15175 IPR022770 Ferric iron reductase FhuF domain BER93_RS15175 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal BER93_RS15180 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal BER93_RS15180 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal BER93_RS15180 IPR000183 Ornithine/DAP/Arg decarboxylase BER93_RS15180 IPR002433 Ornithine decarboxylase BER93_RS15180 IPR029066 PLP-binding barrel BER93_RS15180 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal BER93_RS15180 IPR022272 Lipocalin family conserved site BER93_RS15185 IPR010917 TonB-dependent receptor, conserved site BER93_RS15185 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS15185 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS15185 IPR012910 TonB-dependent receptor, plug domain BER93_RS15185 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS15185 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS15185 IPR010101 TonB-dependent vitamin B12 transporter BtuB BER93_RS15195 IPR028299 ClpA/B, conserved site 2 BER93_RS15195 IPR003593 AAA+ ATPase domain BER93_RS15195 IPR003959 ATPase, AAA-type, core BER93_RS15195 IPR041546 ClpA/ClpB, AAA lid domain BER93_RS15195 IPR019489 Clp ATPase, C-terminal BER93_RS15195 IPR017730 Chaperonin ClpB BER93_RS15195 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15195 IPR004176 Clp, N-terminal BER93_RS15195 IPR001270 ClpA/B family BER93_RS15195 IPR018368 ClpA/B, conserved site 1 BER93_RS15195 IPR036628 Clp, N-terminal domain superfamily BER93_RS15225 IPR006531 Gp5 N-terminal BER93_RS15225 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS15225 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS15225 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS15250 IPR006531 Gp5 N-terminal BER93_RS15250 IPR037026 Vgr protein, OB-fold domain superfamily BER93_RS15250 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_RS15250 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_RS15255 IPR025948 HTH-like domain BER93_RS15255 IPR001584 Integrase, catalytic core BER93_RS15255 IPR012337 Ribonuclease H-like superfamily BER93_RS15255 IPR036397 Ribonuclease H superfamily BER93_RS15260 IPR009057 Homeobox-like domain superfamily BER93_RS15260 IPR002514 Transposase IS3/IS911family BER93_RS15280 IPR008490 Transposase InsH, N-terminal BER93_RS15315 IPR008490 Transposase InsH, N-terminal BER93_RS15320 IPR024084 Isopropylmalate dehydrogenase-like domain BER93_RS15330 IPR011767 Glutaredoxin active site BER93_RS15330 IPR002109 Glutaredoxin BER93_RS15330 IPR014025 Glutaredoxin subgroup BER93_RS15330 IPR011900 Glutaredoxin, GrxC BER93_RS15330 IPR036249 Thioredoxin-like superfamily BER93_RS15340 IPR030873 Beta-barrel assembly-enhancing protease BER93_RS15340 IPR013026 Tetratricopeptide repeat-containing domain BER93_RS15340 IPR011990 Tetratricopeptide-like helical domain superfamily BER93_RS15340 IPR001915 Peptidase M48 BER93_RS15340 IPR019734 Tetratricopeptide repeat BER93_RS15345 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS15345 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB BER93_RS15345 IPR016032 Signal transduction response regulator, C-terminal effector BER93_RS15345 IPR039420 Transcriptional regulatory protein WalR-like BER93_RS15345 IPR001867 OmpR/PhoB-type DNA-binding domain BER93_RS15345 IPR001789 Signal transduction response regulator, receiver domain BER93_RS15345 IPR011006 CheY-like superfamily BER93_RS15350 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS15350 IPR021766 Phosphate regulon sensor protein PhoR BER93_RS15350 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS15350 IPR035965 PAS domain superfamily BER93_RS15350 IPR000014 PAS domain BER93_RS15350 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS15350 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS15350 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS15350 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR BER93_RS15350 IPR005467 Histidine kinase domain BER93_RS15350 IPR013767 PAS fold BER93_RS15355 IPR025198 Polyphosphate kinase N-terminal domain BER93_RS15355 IPR025200 Polyphosphate kinase C-terminal domain 2 BER93_RS15355 IPR036832 Polyphosphate kinase N-terminal domain superfamily BER93_RS15355 IPR024953 Polyphosphate kinase middle domain BER93_RS15355 IPR041108 Polyphosphate kinase, C-terminal domain 1 BER93_RS15355 IPR036830 Polyphosphate kinase middle domain superfamily BER93_RS15355 IPR003414 Polyphosphate kinase BER93_RS15360 IPR030673 Pyrophosphatase, GppA/Ppx-type BER93_RS15360 IPR003695 Ppx/GppA phosphatase BER93_RS15360 IPR022371 Exopolyphosphatase BER93_RS15370 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER93_RS15370 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BER93_RS15375 IPR029052 Metallo-dependent phosphatase-like BER93_RS15375 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type BER93_RS15375 IPR010138 UDP-2,3-diacylglucosamine hydrolase BER93_RS15385 IPR024079 Metallopeptidase, catalytic domain superfamily BER93_RS15395 IPR011197 Uncharacterised conserved protein UCP012318 BER93_RS15395 IPR007402 Protein of unknown function DUF455 BER93_RS15395 IPR009078 Ferritin-like superfamily BER93_RS15400 IPR017932 Glutamine amidotransferase type 2 domain BER93_RS15400 IPR035584 Amidophosphoribosyltransferase, N-terminal BER93_RS15400 IPR005854 Amidophosphoribosyltransferase BER93_RS15400 IPR029057 Phosphoribosyltransferase-like BER93_RS15400 IPR000836 Phosphoribosyltransferase domain BER93_RS15400 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_RS15415 IPR018109 Folylpolyglutamate synthetase, conserved site BER93_RS15415 IPR036615 Mur ligase, C-terminal domain superfamily BER93_RS15415 IPR036565 Mur-like, catalytic domain superfamily BER93_RS15415 IPR004101 Mur ligase, C-terminal BER93_RS15415 IPR001645 Folylpolyglutamate synthetase BER93_RS15415 IPR013221 Mur ligase, central BER93_RS15435 IPR008490 Transposase InsH, N-terminal BER93_RS15445 IPR008928 Six-hairpin glycosidase superfamily BER93_RS15445 IPR012939 Glycosyl hydrolase family 92 BER93_RS15445 IPR041371 Glycosyl hydrolase family 92 N-terminal domain BER93_RS15445 IPR014718 Glycoside hydrolase-type carbohydrate-binding BER93_RS15445 IPR005887 Alpha-1,2-mannosidase, putative BER93_RS15450 IPR017853 Glycoside hydrolase superfamily BER93_RS15450 IPR001944 Glycoside hydrolase, family 35 BER93_RS15450 IPR019801 Glycoside hydrolase, family 35, conserved site BER93_RS15450 IPR031330 Glycoside hydrolase 35, catalytic domain BER93_RS15450 IPR008979 Galactose-binding-like domain superfamily BER93_RS15450 IPR026283 Beta-galactosidase 1-like BER93_RS15495 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_RS15495 IPR003356 DNA methylase, adenine-specific BER93_RS15495 IPR004546 Restriction endonuclease, type I, HsdM BER93_RS15495 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain BER93_RS15495 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily BER93_RS15495 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS15515 IPR021810 Protein of unknown function DUF3387 BER93_RS15515 IPR004473 Restriction endonuclease, type I, HsdR BER93_RS15515 IPR040980 SWI2/SNF2 ATPase BER93_RS15515 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal BER93_RS15515 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15515 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS15535 IPR002514 Transposase IS3/IS911family BER93_RS15535 IPR009057 Homeobox-like domain superfamily BER93_RS15555 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase BER93_RS15555 IPR000462 CDP-alcohol phosphatidyltransferase BER93_RS15565 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily BER93_RS15565 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain BER93_RS15565 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) BER93_RS15565 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 BER93_RS15565 IPR002316 Proline-tRNA ligase, class IIa BER93_RS15565 IPR036621 Anticodon-binding domain superfamily BER93_RS15565 IPR004154 Anticodon-binding BER93_RS15565 IPR006195 Aminoacyl-tRNA synthetase, class II BER93_RS15565 IPR033730 Prokaryote proline-tRNA ligase core domain BER93_RS15565 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type BER93_RS15580 IPR030802 ABC transporter permease MalE BER93_RS15580 IPR003453 ABC transport permease subunit MlaE, Proteobacteria BER93_RS15585 IPR003439 ABC transporter-like BER93_RS15585 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15585 IPR003593 AAA+ ATPase domain BER93_RS15585 IPR017871 ABC transporter, conserved site BER93_RS15585 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl BER93_RS15590 IPR005586 ABC-type transport auxiliary lipoprotein component BER93_RS15590 IPR003399 Mce/MlaD BER93_RS15605 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS15605 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_RS15605 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase BER93_RS15610 IPR032719 Glycosyltransferase WbsX BER93_RS15610 IPR007739 Rhamnan synthesis F BER93_RS15615 IPR012791 3-oxoacid CoA-transferase, subunit B BER93_RS15615 IPR004164 Coenzyme A transferase active site BER93_RS15615 IPR037171 NagB/RpiA transferase-like BER93_RS15615 IPR004165 Coenzyme A transferase family I BER93_RS15620 IPR012792 3-oxoacid CoA-transferase, subunit A BER93_RS15620 IPR037171 NagB/RpiA transferase-like BER93_RS15620 IPR004165 Coenzyme A transferase family I BER93_RS15620 IPR004163 Coenzyme A transferase binding site BER93_RS15625 IPR016066 Alpha-D-phosphohexomutase, conserved site BER93_RS15625 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II BER93_RS15625 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III BER93_RS15625 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III BER93_RS15625 IPR005841 Alpha-D-phosphohexomutase superfamily BER93_RS15625 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I BER93_RS15625 IPR005843 Alpha-D-phosphohexomutase, C-terminal BER93_RS15625 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily BER93_RS15630 IPR011051 RmlC-like cupin domain superfamily BER93_RS15630 IPR014710 RmlC-like jelly roll fold BER93_RS15630 IPR005835 Nucleotidyl transferase domain BER93_RS15630 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal BER93_RS15630 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase BER93_RS15630 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS15635 IPR005913 dTDP-4-dehydrorhamnose reductase family BER93_RS15635 IPR036291 NAD(P)-binding domain superfamily BER93_RS15635 IPR029903 RmlD-like substrate binding domain BER93_RS15640 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related BER93_RS15640 IPR014710 RmlC-like jelly roll fold BER93_RS15640 IPR011051 RmlC-like cupin domain superfamily BER93_RS15645 IPR005835 Nucleotidyl transferase domain BER93_RS15645 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form BER93_RS15645 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS15650 IPR036291 NAD(P)-binding domain superfamily BER93_RS15650 IPR005888 dTDP-glucose 4,6-dehydratase BER93_RS15650 IPR016040 NAD(P)-binding domain BER93_RS15655 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal BER93_RS15655 IPR012255 Electron transfer flavoprotein, beta subunit BER93_RS15655 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS15655 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal BER93_RS15655 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site BER93_RS15660 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site BER93_RS15660 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS15660 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal BER93_RS15660 IPR001308 Electron transfer flavoprotein alpha subunit/FixB BER93_RS15660 IPR029035 DHS-like NAD/FAD-binding domain superfamily BER93_RS15660 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal BER93_RS15660 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal BER93_RS15670 IPR001173 Glycosyltransferase 2-like BER93_RS15670 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS15690 IPR001509 NAD-dependent epimerase/dehydratase BER93_RS15690 IPR036291 NAD(P)-binding domain superfamily BER93_RS15695 IPR006368 GDP-mannose 4,6-dehydratase BER93_RS15695 IPR016040 NAD(P)-binding domain BER93_RS15695 IPR036291 NAD(P)-binding domain superfamily BER93_RS15715 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS15715 IPR000719 Protein kinase domain BER93_RS15715 IPR025714 Methyltransferase domain BER93_RS15715 IPR011009 Protein kinase-like domain superfamily BER93_RS15720 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15720 IPR003439 ABC transporter-like BER93_RS15720 IPR003593 AAA+ ATPase domain BER93_RS15720 IPR017871 ABC transporter, conserved site BER93_RS15735 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS15735 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS15735 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS15735 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme BER93_RS15740 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_RS15740 IPR001926 Pyridoxal-phosphate dependent enzyme BER93_RS15740 IPR005857 Cystathionine beta-synthase BER93_RS15740 IPR000644 CBS domain BER93_RS15760 IPR001482 Type II/IV secretion system protein BER93_RS15760 IPR006321 Pilus retraction protein PilT BER93_RS15760 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15770 IPR010987 Glutathione S-transferase, C-terminal-like BER93_RS15770 IPR036249 Thioredoxin-like superfamily BER93_RS15770 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BER93_RS15770 IPR034330 Glutathione S-transferases, class Zeta , C-terminal BER93_RS15770 IPR034333 Glutathione S-transferases, class Zeta , N-terminal BER93_RS15770 IPR005955 Glutathione S-transferases, class Zeta BER93_RS15770 IPR004046 Glutathione S-transferase, C-terminal BER93_RS15770 IPR004045 Glutathione S-transferase, N-terminal BER93_RS15770 IPR040079 Glutathione Transferase family BER93_RS15780 IPR011545 DEAD/DEAH box helicase domain BER93_RS15780 IPR014014 RNA helicase, DEAD-box type, Q motif BER93_RS15780 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BER93_RS15780 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15780 IPR028622 ATP-dependent RNA helicase RhlE BER93_RS15780 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS15780 IPR001650 Helicase, C-terminal BER93_RS15785 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily BER93_RS15785 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family BER93_RS15795 IPR004472 Dethiobiotin synthase BioD BER93_RS15795 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15800 IPR000614 Free Met sulfoxide reductase conserved site BER93_RS15800 IPR029016 GAF-like domain superfamily BER93_RS15800 IPR003018 GAF domain BER93_RS15815 IPR008490 Transposase InsH, N-terminal BER93_RS15815 IPR002559 Transposase, IS4-like BER93_RS15820 IPR009057 Homeobox-like domain superfamily BER93_RS15820 IPR002514 Transposase IS3/IS911family BER93_RS15825 IPR023214 HAD superfamily BER93_RS15825 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic BER93_RS15825 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BER93_RS15825 IPR041492 Haloacid dehalogenase-like hydrolase BER93_RS15825 IPR006549 HAD-superfamily hydrolase,subfamily IIIA BER93_RS15825 IPR006439 HAD hydrolase, subfamily IA BER93_RS15825 IPR036412 HAD-like superfamily BER93_RS15825 IPR037512 Phosphoglycolate phosphatase, prokaryotic BER93_RS15830 IPR017961 DNA polymerase, Y-family, little finger domain BER93_RS15830 IPR001126 UmuC domain BER93_RS15830 IPR022880 DNA polymerase IV BER93_RS15830 IPR036775 DNA polymerase, Y-family, little finger domain superfamily BER93_RS15840 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA BER93_RS15840 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ BER93_RS15840 IPR029069 HotDog domain superfamily BER93_RS15845 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_RS15845 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER93_RS15845 IPR014031 Beta-ketoacyl synthase, C-terminal BER93_RS15845 IPR018201 Beta-ketoacyl synthase, active site BER93_RS15845 IPR000794 Beta-ketoacyl synthase BER93_RS15845 IPR016039 Thiolase-like BER93_RS15855 IPR001567 Peptidase M3A/M3B catalytic domain BER93_RS15855 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BER93_RS15870 IPR033138 Multicopper oxidases, conserved site BER93_RS15870 IPR006376 Copper-resistance protein CopA BER93_RS15870 IPR011707 Multicopper oxidase, type 3 BER93_RS15870 IPR008972 Cupredoxin BER93_RS15870 IPR034282 Copper resistance protein CopA, second cupredoxin domain BER93_RS15870 IPR001117 Multicopper oxidase, type 1 BER93_RS15870 IPR034284 Copper resistance protein, first cupredoxin domain BER93_RS15870 IPR034279 Copper resistance protein, third cupredoxin domain BER93_RS15870 IPR006311 Twin-arginine translocation pathway, signal sequence BER93_RS15870 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BER93_RS15870 IPR011706 Multicopper oxidase, type 2 BER93_RS15870 IPR002355 Multicopper oxidase, copper-binding site BER93_RS15875 IPR007939 Copper resistance B precursor BER93_RS15880 IPR018146 Glyoxalase I, conserved site BER93_RS15880 IPR004361 Glyoxalase I BER93_RS15880 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BER93_RS15880 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER93_RS15880 IPR037523 Vicinal oxygen chelate (VOC) domain BER93_RS15890 IPR001347 Sugar isomerase (SIS) BER93_RS15890 IPR035490 GlmS/FrlB, SIS domain 2 BER93_RS15890 IPR035466 GlmS/AgaS, SIS domain 1 BER93_RS15890 IPR017932 Glutamine amidotransferase type 2 domain BER93_RS15890 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising BER93_RS15890 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_RS15905 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS15905 IPR005467 Histidine kinase domain BER93_RS15905 IPR013767 PAS fold BER93_RS15905 IPR035965 PAS domain superfamily BER93_RS15905 IPR000700 PAS-associated, C-terminal BER93_RS15905 IPR003660 HAMP domain BER93_RS15905 IPR000014 PAS domain BER93_RS15905 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS15905 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS15905 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS15905 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS15915 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS15915 IPR025877 MobA-like NTP transferase BER93_RS15915 IPR018357 Hexapeptide transferase, conserved site BER93_RS15915 IPR001451 Hexapeptide repeat BER93_RS15915 IPR038009 GlmU, C-terminal LbH domain BER93_RS15915 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase BER93_RS15915 IPR011004 Trimeric LpxA-like superfamily BER93_RS15925 IPR002701 Chorismate mutase II, prokaryotic-type BER93_RS15925 IPR036263 Chorismate mutase type II superfamily BER93_RS15925 IPR008240 Chorismate mutase, periplasmic BER93_RS15930 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal BER93_RS15930 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain BER93_RS15930 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit BER93_RS15930 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily BER93_RS15930 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal BER93_RS15935 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15935 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal BER93_RS15935 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_RS15935 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily BER93_RS15935 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain BER93_RS15935 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site BER93_RS15935 IPR005722 ATP synthase, F1 complex, beta subunit BER93_RS15935 IPR003593 AAA+ ATPase domain BER93_RS15940 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily BER93_RS15940 IPR000131 ATP synthase, F1 complex, gamma subunit BER93_RS15940 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site BER93_RS15945 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS15945 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_RS15945 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily BER93_RS15945 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain BER93_RS15945 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site BER93_RS15945 IPR005294 ATP synthase, F1 complex, alpha subunit BER93_RS15945 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain BER93_RS15945 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily BER93_RS15945 IPR000793 ATP synthase, alpha subunit, C-terminal BER93_RS15945 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily BER93_RS15950 IPR000711 ATPase, OSCP/delta subunit BER93_RS15950 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily BER93_RS15955 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast BER93_RS15955 IPR005864 ATP synthase, F0 complex, subunit b, bacterial BER93_RS15955 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily BER93_RS15960 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast BER93_RS15960 IPR000454 ATP synthase, F0 complex, subunit C BER93_RS15960 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site BER93_RS15960 IPR038662 F1F0 ATP synthase subunit C superfamily BER93_RS15960 IPR002379 V-ATPase proteolipid subunit C-like domain BER93_RS15960 IPR035921 F/V-ATP synthase subunit C superfamily BER93_RS15965 IPR035908 ATP synthase, F0 complex, subunit A superfamily BER93_RS15965 IPR000568 ATP synthase, F0 complex, subunit A BER93_RS15965 IPR023011 ATP synthase, F0 complex, subunit A, active site BER93_RS15980 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site BER93_RS15980 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_RS15980 IPR006258 Dihydrolipoamide dehydrogenase BER93_RS15980 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily BER93_RS15980 IPR023753 FAD/NAD(P)-binding domain BER93_RS15980 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS15980 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I BER93_RS15990 IPR004167 Peripheral subunit-binding domain BER93_RS15990 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER93_RS15990 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex BER93_RS15990 IPR000089 Biotin/lipoyl attachment BER93_RS15990 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily BER93_RS15990 IPR036625 E3-binding domain superfamily BER93_RS15990 IPR011053 Single hybrid motif BER93_RS15990 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain BER93_RS16015 IPR004872 Lipoprotein NlpA family BER93_RS16020 IPR035906 MetI-like superfamily BER93_RS16020 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS16025 IPR026253 Methionine import ATP-binding protein MetN BER93_RS16025 IPR003439 ABC transporter-like BER93_RS16025 IPR017871 ABC transporter, conserved site BER93_RS16025 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal BER93_RS16025 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain BER93_RS16025 IPR018449 NIL domain BER93_RS16025 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS16025 IPR003593 AAA+ ATPase domain BER93_RS16030 IPR007551 Protein of unknown function DUF520 BER93_RS16030 IPR035571 UPF0234-like, C-terminal BER93_RS16030 IPR035570 UPF0234, N-terminal BER93_RS16030 IPR036183 YajQ-like superfamily BER93_RS16065 IPR002559 Transposase, IS4-like BER93_RS16075 IPR006145 Pseudouridine synthase, RsuA/RluA BER93_RS16075 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain BER93_RS16075 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_RS16075 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site BER93_RS16075 IPR002942 RNA-binding S4 domain BER93_RS16075 IPR036986 RNA-binding S4 domain superfamily BER93_RS16075 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS16080 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_RS16080 IPR023543 rRNA small subunit methyltransferase C BER93_RS16080 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS16080 IPR007848 Methyltransferase small domain BER93_RS16080 IPR013675 Methyltransferase small, N-terminal BER93_RS16090 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase BER93_RS16090 IPR011042 Six-bladed beta-propeller, TolB-like BER93_RS16090 IPR012938 Glucose/Sorbosone dehydrogenase BER93_RS16100 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS16100 IPR000014 PAS domain BER93_RS16100 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS16100 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS16100 IPR035965 PAS domain superfamily BER93_RS16100 IPR013767 PAS fold BER93_RS16100 IPR005467 Histidine kinase domain BER93_RS16100 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS16100 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS16120 IPR000821 Alanine racemase BER93_RS16120 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal BER93_RS16120 IPR011079 Alanine racemase, C-terminal BER93_RS16120 IPR001608 Alanine racemase, N-terminal BER93_RS16120 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site BER93_RS16120 IPR029066 PLP-binding barrel BER93_RS16125 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS16125 IPR006076 FAD dependent oxidoreductase BER93_RS16125 IPR023080 D-amino acid dehydrogenase DadA BER93_RS16130 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS16130 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BER93_RS16130 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS16130 IPR000485 AsnC-type HTH domain BER93_RS16130 IPR011008 Dimeric alpha-beta barrel BER93_RS16130 IPR019888 Transcription regulator AsnC-type BER93_RS16130 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BER93_RS16130 IPR011991 ArsR-like helix-turn-helix domain BER93_RS16140 IPR028427 Peptide methionine sulfoxide reductase BER93_RS16140 IPR002579 Peptide methionine sulphoxide reductase MrsB BER93_RS16140 IPR011057 Mss4-like superfamily BER93_RS16145 IPR002898 MotA/TolQ/ExbB proton channel BER93_RS16145 IPR022522 Flagellar motor stator, MotA BER93_RS16145 IPR000540 Flagellar motor protein MotA, conserved site BER93_RS16150 IPR006665 OmpA-like domain BER93_RS16150 IPR025713 Motility protein B, N-terminal domain BER93_RS16150 IPR036737 OmpA-like domain superfamily BER93_RS16220 IPR002646 Poly A polymerase, head domain BER93_RS16220 IPR006674 HD domain BER93_RS16220 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain BER93_RS16220 IPR012006 tRNA nucleotidyltransferase, proteobacteria BER93_RS16220 IPR003607 HD/PDEase domain BER93_RS16230 IPR024570 Murein transglycosylase-C, N-terminal BER93_RS16230 IPR023346 Lysozyme-like domain superfamily BER93_RS16230 IPR023664 Murein transglycosylase-C BER93_RS16230 IPR000189 Prokaryotic transglycosylase, active site BER93_RS16230 IPR008258 Transglycosylase SLT domain 1 BER93_RS16245 IPR008490 Transposase InsH, N-terminal BER93_RS16250 IPR001584 Integrase, catalytic core BER93_RS16250 IPR012337 Ribonuclease H-like superfamily BER93_RS16250 IPR036397 Ribonuclease H superfamily BER93_RS16250 IPR025948 HTH-like domain BER93_RS16305 IPR036441 Dehydroquinase, class II superfamily BER93_RS16305 IPR001874 Dehydroquinase, class II BER93_RS16305 IPR018509 Dehydroquinase, class II, conserved site BER93_RS16310 IPR001249 Acetyl-CoA biotin carboxyl carrier BER93_RS16310 IPR001882 Biotin-binding site BER93_RS16310 IPR000089 Biotin/lipoyl attachment BER93_RS16310 IPR011053 Single hybrid motif BER93_RS16320 IPR005482 Biotin carboxylase, C-terminal BER93_RS16320 IPR016185 Pre-ATP-grasp domain superfamily BER93_RS16320 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS16320 IPR011761 ATP-grasp fold BER93_RS16320 IPR011054 Rudiment single hybrid motif BER93_RS16320 IPR005481 Biotin carboxylase-like, N-terminal domain BER93_RS16320 IPR011764 Biotin carboxylation domain BER93_RS16320 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain BER93_RS16320 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase BER93_RS16325 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS16325 IPR004498 Ribosomal protein L11 methyltransferase BER93_RS16335 IPR001387 Cro/C1-type helix-turn-helix domain BER93_RS16335 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS16345 IPR005412 DNA-binding protein Fis BER93_RS16345 IPR009057 Homeobox-like domain superfamily BER93_RS16345 IPR002197 DNA binding HTH domain, Fis-type BER93_RS16350 IPR000258 Bacterial ice-nucleation, octamer repeat BER93_RS16350 IPR040231 Ice nucleation protein BER93_RS16350 IPR000258 Bacterial ice-nucleation, octamer repeat BER93_RS16350 IPR040231 Ice nucleation protein BER93_RS16355 IPR024051 AICAR transformylase, duplicated domain superfamily BER93_RS16355 IPR002695 Bifunctional purine biosynthesis protein PurH-like BER93_RS16355 IPR036914 Methylglyoxal synthase-like domain superfamily BER93_RS16355 IPR016193 Cytidine deaminase-like BER93_RS16355 IPR011607 Methylglyoxal synthase-like domain BER93_RS16360 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal BER93_RS16360 IPR020559 Phosphoribosylglycinamide synthetase, conserved site BER93_RS16360 IPR016185 Pre-ATP-grasp domain superfamily BER93_RS16360 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily BER93_RS16360 IPR020560 Phosphoribosylglycinamide synthetase, C-domain BER93_RS16360 IPR000115 Phosphoribosylglycinamide synthetase BER93_RS16360 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BER93_RS16360 IPR011054 Rudiment single hybrid motif BER93_RS16360 IPR011761 ATP-grasp fold BER93_RS16360 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS16365 IPR010019 Integral membrane protein, YccS BER93_RS16365 IPR010020 Integral membrane protein, YccS/YhfK BER93_RS16365 IPR032692 Integral membrane protein YccS, N-terminal BER93_RS16370 IPR020846 Major facilitator superfamily domain BER93_RS16370 IPR011701 Major facilitator superfamily BER93_RS16370 IPR036259 MFS transporter superfamily BER93_RS16385 IPR036259 MFS transporter superfamily BER93_RS16385 IPR011701 Major facilitator superfamily BER93_RS16385 IPR023727 Lysophospholipid transporter LplT BER93_RS16400 IPR031347 Protein AmpE BER93_RS16400 IPR004485 Cobalamin biosynthesis CobD/CbiB BER93_RS16405 IPR015376 Zinc ribbon, NADH pyrophosphatase BER93_RS16405 IPR000086 NUDIX hydrolase domain BER93_RS16405 IPR020084 NUDIX hydrolase, conserved site BER93_RS16405 IPR015375 NADH pyrophosphatase-like, N-terminal BER93_RS16405 IPR015797 NUDIX hydrolase-like domain superfamily BER93_RS16405 IPR022925 NADH pyrophosphatase NudC BER93_RS16415 IPR008490 Transposase InsH, N-terminal BER93_RS16415 IPR002559 Transposase, IS4-like BER93_RS16425 IPR009057 Homeobox-like domain superfamily BER93_RS16425 IPR002514 Transposase IS3/IS911family BER93_RS16430 IPR036397 Ribonuclease H superfamily BER93_RS16430 IPR012337 Ribonuclease H-like superfamily BER93_RS16430 IPR025948 HTH-like domain BER93_RS16430 IPR001584 Integrase, catalytic core BER93_RS16460 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal BER93_RS16460 IPR006276 Cobalamin-independent methionine synthase BER93_RS16460 IPR038071 UROD/MetE-like superfamily BER93_RS16460 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal BER93_RS16470 IPR036291 NAD(P)-binding domain superfamily BER93_RS16470 IPR008030 NmrA-like domain BER93_RS16475 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS16475 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS16475 IPR002577 Helix-turn-helix, HxlR type BER93_RS16480 IPR042096 Dihydroxy-acid dehydratase, C-terminal BER93_RS16480 IPR004404 Dihydroxy-acid dehydratase BER93_RS16480 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase BER93_RS16480 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site BER93_RS16480 IPR037237 IlvD/EDD, N-terminal domain BER93_RS16485 IPR001451 Hexapeptide repeat BER93_RS16485 IPR011004 Trimeric LpxA-like superfamily BER93_RS16500 IPR002514 Transposase IS3/IS911family BER93_RS16500 IPR009057 Homeobox-like domain superfamily BER93_RS16505 IPR001584 Integrase, catalytic core BER93_RS16505 IPR012337 Ribonuclease H-like superfamily BER93_RS16505 IPR036397 Ribonuclease H superfamily BER93_RS16505 IPR025948 HTH-like domain BER93_RS16515 IPR002559 Transposase, IS4-like BER93_RS16515 IPR008490 Transposase InsH, N-terminal BER93_RS16520 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 BER93_RS16520 IPR001036 Acriflavin resistance protein BER93_RS16520 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS16525 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS16525 IPR001036 Acriflavin resistance protein BER93_RS16525 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 BER93_RS16535 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain BER93_RS16535 IPR004810 Formyltetrahydrofolate deformylase BER93_RS16535 IPR002376 Formyl transferase, N-terminal BER93_RS16535 IPR002912 ACT domain BER93_RS16535 IPR036477 Formyl transferase, N-terminal domain superfamily BER93_RS16540 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal BER93_RS16540 IPR023663 NADPH dehydrogenase BER93_RS16540 IPR013785 Aldolase-type TIM barrel BER93_RS16545 IPR029035 DHS-like NAD/FAD-binding domain superfamily BER93_RS16545 IPR026591 Sirtuin, catalytic core small domain superfamily BER93_RS16545 IPR026587 Sirtuin, class II BER93_RS16545 IPR003000 Sirtuin family BER93_RS16545 IPR026590 Sirtuin family, catalytic core domain BER93_RS16555 IPR020846 Major facilitator superfamily domain BER93_RS16555 IPR011701 Major facilitator superfamily BER93_RS16555 IPR036259 MFS transporter superfamily BER93_RS16560 IPR024918 3'-5' ssDNA/RNA exonuclease TatD BER93_RS16560 IPR018228 Deoxyribonuclease, TatD-related, conserved site BER93_RS16560 IPR032466 Metal-dependent hydrolase BER93_RS16560 IPR001130 TatD family BER93_RS16565 IPR009921 Domain of unknown function DUF1456 BER93_RS16575 IPR014001 Helicase superfamily 1/2, ATP-binding domain BER93_RS16575 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal BER93_RS16575 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS16575 IPR007502 Helicase-associated domain BER93_RS16575 IPR011545 DEAD/DEAH box helicase domain BER93_RS16575 IPR010225 ATP-dependent helicase HrpB BER93_RS16575 IPR001650 Helicase, C-terminal BER93_RS16590 IPR008490 Transposase InsH, N-terminal BER93_RS16595 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_RS16595 IPR020103 Pseudouridine synthase, catalytic domain superfamily BER93_RS16595 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site BER93_RS16595 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain BER93_RS16595 IPR006145 Pseudouridine synthase, RsuA/RluA BER93_RS16605 IPR023210 NADP-dependent oxidoreductase domain BER93_RS16605 IPR036812 NADP-dependent oxidoreductase domain superfamily BER93_RS16610 IPR041694 Oxidoreductase, N-terminal domain BER93_RS16610 IPR020843 Polyketide synthase, enoylreductase domain BER93_RS16610 IPR011032 GroES-like superfamily BER93_RS16610 IPR036291 NAD(P)-binding domain superfamily BER93_RS16610 IPR013149 Alcohol dehydrogenase, C-terminal BER93_RS16615 IPR018170 Aldo/keto reductase, conserved site BER93_RS16615 IPR036812 NADP-dependent oxidoreductase domain superfamily BER93_RS16615 IPR023210 NADP-dependent oxidoreductase domain BER93_RS16615 IPR020471 Aldo/keto reductase BER93_RS16625 IPR036102 OsmC/Ohr superfamily BER93_RS16625 IPR019953 Organic hydroperoxide resistance protein famiy BER93_RS16625 IPR015946 K homology domain-like, alpha/beta BER93_RS16625 IPR003718 OsmC/Ohr family BER93_RS16635 IPR005654 ATPase, AFG1-like BER93_RS16635 IPR030870 Cell division protein ZapE BER93_RS16635 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS16685 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily BER93_RS16685 IPR006089 Acyl-CoA dehydrogenase, conserved site BER93_RS16685 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain BER93_RS16685 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal BER93_RS16685 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_RS16685 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily BER93_RS16685 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_RS16690 IPR034733 Acetyl-CoA carboxylase BER93_RS16690 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal BER93_RS16690 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS16690 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal BER93_RS16695 IPR005481 Biotin carboxylase-like, N-terminal domain BER93_RS16695 IPR011761 ATP-grasp fold BER93_RS16695 IPR013815 ATP-grasp fold, subdomain 1 BER93_RS16695 IPR001882 Biotin-binding site BER93_RS16695 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain BER93_RS16695 IPR011764 Biotin carboxylation domain BER93_RS16695 IPR011053 Single hybrid motif BER93_RS16695 IPR011054 Rudiment single hybrid motif BER93_RS16695 IPR005482 Biotin carboxylase, C-terminal BER93_RS16695 IPR000089 Biotin/lipoyl attachment BER93_RS16695 IPR041265 Propionyl-coenzyme A carboxylase, BT domain BER93_RS16695 IPR016185 Pre-ATP-grasp domain superfamily BER93_RS16705 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain BER93_RS16705 IPR002729 CRISPR-associated protein Cas1 BER93_RS16705 IPR019857 CRISPR-associated protein Cas1, YPEST subtype BER93_RS16705 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain BER93_RS16710 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type BER93_RS16710 IPR006483 CRISPR-associated Cas3-type HD domain BER93_RS16710 IPR038257 CRISPR-associated Cas3-type HD domain superfamily BER93_RS16710 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS16715 IPR013397 CRISPR-associated protein Csy1 BER93_RS16720 IPR013398 CRISPR-associated protein Csy2 BER93_RS16725 IPR013399 CRISPR-associated protein Csy3 BER93_RS16730 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST BER93_RS16735 IPR036397 Ribonuclease H superfamily BER93_RS16735 IPR001584 Integrase, catalytic core BER93_RS16735 IPR012337 Ribonuclease H-like superfamily BER93_RS16735 IPR025948 HTH-like domain BER93_RS16740 IPR001584 Integrase, catalytic core BER93_RS16740 IPR012337 Ribonuclease H-like superfamily BER93_RS16740 IPR036397 Ribonuclease H superfamily BER93_RS16740 IPR025948 HTH-like domain BER93_RS16745 IPR009057 Homeobox-like domain superfamily BER93_RS16745 IPR002514 Transposase IS3/IS911family BER93_RS16755 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_RS16755 IPR001036 Acriflavin resistance protein BER93_RS16760 IPR006143 RND efflux pump, membrane fusion protein BER93_RS16760 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BER93_RS16765 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain BER93_RS16765 IPR009000 Translation protein, beta-barrel domain superfamily BER93_RS16765 IPR000795 Transcription factor, GTP-binding domain BER93_RS16765 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BER93_RS16765 IPR002891 Adenylyl-sulfate kinase BER93_RS16765 IPR031157 Tr-type G domain, conserved site BER93_RS16765 IPR011779 Sulphate adenylyltransferase, large subunit BER93_RS16765 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS16770 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS16770 IPR011784 Sulphate adenylyltransferase, small subunit BER93_RS16770 IPR002500 Phosphoadenosine phosphosulphate reductase BER93_RS16775 IPR017938 Riboflavin synthase-like beta-barrel BER93_RS16775 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase BER93_RS16775 IPR017927 FAD-binding domain, ferredoxin reductase-type BER93_RS16775 IPR001094 Flavodoxin-like BER93_RS16775 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria BER93_RS16775 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_RS16775 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily BER93_RS16775 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BER93_RS16775 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain BER93_RS16775 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding BER93_RS16775 IPR029039 Flavoprotein-like superfamily BER93_RS16775 IPR008254 Flavodoxin/nitric oxide synthase BER93_RS16780 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain BER93_RS16780 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily BER93_RS16780 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit BER93_RS16780 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain BER93_RS16780 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site BER93_RS16785 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS16785 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase BER93_RS16785 IPR002500 Phosphoadenosine phosphosulphate reductase BER93_RS16785 IPR011800 Phosphoadenosine phosphosulphate reductase CysH BER93_RS16795 IPR012910 TonB-dependent receptor, plug domain BER93_RS16795 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS16795 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS16795 IPR010916 TonB box, conserved site BER93_RS16795 IPR010917 TonB-dependent receptor, conserved site BER93_RS16795 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS16795 IPR010101 TonB-dependent vitamin B12 transporter BtuB BER93_RS16795 IPR039426 Vitamin B12 transporter BtuB-like BER93_RS16805 IPR037952 Sensor histidine kinase TorS, sensor domain BER93_RS16805 IPR036641 HPT domain superfamily BER93_RS16805 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS16805 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS16805 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS16805 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS16805 IPR005467 Histidine kinase domain BER93_RS16805 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS16805 IPR011006 CheY-like superfamily BER93_RS16805 IPR003660 HAMP domain BER93_RS16805 IPR001789 Signal transduction response regulator, receiver domain BER93_RS16805 IPR038188 TorS, sensor domain superfamily BER93_RS16805 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS16815 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS16815 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS16815 IPR000847 Transcription regulator HTH, LysR BER93_RS16815 IPR005119 LysR, substrate-binding BER93_RS16820 IPR014777 Tetrapyrrole methylase, subdomain 1 BER93_RS16820 IPR014776 Tetrapyrrole methylase, subdomain 2 BER93_RS16820 IPR006366 Uroporphyrin-III C-methyltransferase BER93_RS16820 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site BER93_RS16820 IPR006367 Sirohaem synthase, N-terminal BER93_RS16820 IPR012409 Sirohaem synthase BER93_RS16820 IPR035996 Tetrapyrrole methylase superfamily BER93_RS16820 IPR000878 Tetrapyrrole methylase BER93_RS16820 IPR028281 Siroheme synthase, central domain BER93_RS16820 IPR036291 NAD(P)-binding domain superfamily BER93_RS16820 IPR019478 Sirohaem synthase, dimerisation domain BER93_RS16825 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_RS16825 IPR001926 Pyridoxal-phosphate dependent enzyme BER93_RS16825 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site BER93_RS16825 IPR005859 Cysteine synthase CysK BER93_RS16825 IPR005856 Cysteine synthase BER93_RS16830 IPR002589 Macro domain BER93_RS16835 IPR013785 Aldolase-type TIM barrel BER93_RS16835 IPR000741 Fructose-bisphosphate aldolase, class-I BER93_RS16835 IPR029768 Fructose-bisphosphate aldolase class-I active site BER93_RS16840 IPR018209 Pyruvate kinase, active site BER93_RS16840 IPR001697 Pyruvate kinase BER93_RS16840 IPR040442 Pyruvate kinase-like domain superfamily BER93_RS16840 IPR011037 Pyruvate kinase-like, insert domain superfamily BER93_RS16840 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily BER93_RS16840 IPR015793 Pyruvate kinase, barrel BER93_RS16840 IPR015806 Pyruvate kinase, insert domain superfamily BER93_RS16840 IPR036918 Pyruvate kinase, C-terminal domain superfamily BER93_RS16840 IPR015795 Pyruvate kinase, C-terminal BER93_RS16845 IPR006439 HAD hydrolase, subfamily IA BER93_RS16845 IPR036412 HAD-like superfamily BER93_RS16845 IPR037512 Phosphoglycolate phosphatase, prokaryotic BER93_RS16845 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic BER93_RS16845 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BER93_RS16845 IPR023214 HAD superfamily BER93_RS16845 IPR041492 Haloacid dehalogenase-like hydrolase BER93_RS16850 IPR015911 Phosphoglycerate kinase, conserved site BER93_RS16850 IPR036043 Phosphoglycerate kinase superfamily BER93_RS16850 IPR001576 Phosphoglycerate kinase BER93_RS16850 IPR015824 Phosphoglycerate kinase, N-terminal BER93_RS16875 IPR005467 Histidine kinase domain BER93_RS16875 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS16875 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS16875 IPR003660 HAMP domain BER93_RS16875 IPR038515 CpxA, periplasmic domain superfamily BER93_RS16875 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS16875 IPR032404 Two-component sensor protein CpxA, periplasmic domain BER93_RS16875 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS16875 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS16880 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS16880 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS16880 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS16880 IPR016454 Cysteine desulfurase BER93_RS16880 IPR010240 Cysteine desulfurase IscS BER93_RS16880 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BER93_RS16880 IPR000192 Aminotransferase class V domain BER93_RS16915 IPR002514 Transposase IS3/IS911family BER93_RS16915 IPR009057 Homeobox-like domain superfamily BER93_RS16920 IPR025948 HTH-like domain BER93_RS16920 IPR001584 Integrase, catalytic core BER93_RS16920 IPR036397 Ribonuclease H superfamily BER93_RS16920 IPR012337 Ribonuclease H-like superfamily BER93_RS16930 IPR008490 Transposase InsH, N-terminal BER93_RS16930 IPR002559 Transposase, IS4-like BER93_RS16945 IPR036291 NAD(P)-binding domain superfamily BER93_RS16945 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I BER93_RS16945 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain BER93_RS16945 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain BER93_RS16945 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family BER93_RS16945 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site BER93_RS16960 IPR001279 Metallo-beta-lactamase BER93_RS16960 IPR005939 Beta-lactamase hydrolase-like BER93_RS16960 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BER93_RS16960 IPR029021 Protein-tyrosine phosphatase-like BER93_RS16965 IPR005950 Molybdate ABC transporter, substrate-binding protein BER93_RS16970 IPR011867 Molybdate ABC transporter, permease protein BER93_RS16970 IPR035906 MetI-like superfamily BER93_RS16970 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS16975 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS16975 IPR004606 Molybdenum-pterin binding BER93_RS16975 IPR011868 Molybdate ABC transporter, ATP-binding protein BER93_RS16975 IPR008995 Molybdate/tungstate binding, C-terminal BER93_RS16975 IPR015852 ABC transporter, molybdenum import, ModC BER93_RS16975 IPR017871 ABC transporter, conserved site BER93_RS16975 IPR005116 Transport-associated OB, type 1 BER93_RS16975 IPR003439 ABC transporter-like BER93_RS16975 IPR003593 AAA+ ATPase domain BER93_RS16990 IPR014071 Copper transport repressor CopY/TcrY BER93_RS16990 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS16990 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS16990 IPR005650 BlaI transcriptional regulatory family BER93_RS17000 IPR005490 L,D-transpeptidase catalytic domain BER93_RS17000 IPR038063 L,D-transpeptidase catalytic domain-like BER93_RS17000 IPR036779 LysM domain superfamily BER93_RS17000 IPR018392 LysM domain BER93_RS17005 IPR016047 Peptidase M23 BER93_RS17005 IPR011055 Duplicated hybrid motif BER93_RS17005 IPR008258 Transglycosylase SLT domain 1 BER93_RS17005 IPR000189 Prokaryotic transglycosylase, active site BER93_RS17005 IPR023346 Lysozyme-like domain superfamily BER93_RS17005 IPR010090 Phage tail tape measure protein BER93_RS17010 IPR039423 TonB-dependent receptor-like BER93_RS17010 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS17010 IPR010916 TonB box, conserved site BER93_RS17010 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS17010 IPR010917 TonB-dependent receptor, conserved site BER93_RS17010 IPR012910 TonB-dependent receptor, plug domain BER93_RS17010 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS17010 IPR010105 TonB-dependent siderophore receptor BER93_RS17015 IPR033247 Transketolase family BER93_RS17015 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II BER93_RS17015 IPR029061 Thiamin diphosphate-binding fold BER93_RS17015 IPR020826 Transketolase binding site BER93_RS17015 IPR033248 Transketolase, C-terminal domain BER93_RS17015 IPR005478 Transketolase, bacterial-like BER93_RS17015 IPR005474 Transketolase, N-terminal BER93_RS17015 IPR005475 Transketolase-like, pyrimidine-binding domain BER93_RS17020 IPR033380 Glutamate-aspartate symport protein GltP/GltT BER93_RS17020 IPR036458 Sodium:dicarboxylate symporter superfamily BER93_RS17020 IPR018107 Sodium:dicarboxylate symporter, conserved site BER93_RS17020 IPR001991 Sodium:dicarboxylate symporter BER93_RS17020 IPR034703 Proton/glutamate-aspartate symporter GltP BER93_RS17030 IPR022933 Uncharacterised protein family UPF0353 BER93_RS17030 IPR002035 von Willebrand factor, type A BER93_RS17030 IPR036465 von Willebrand factor A-like domain superfamily BER93_RS17050 IPR011703 ATPase, AAA-3 BER93_RS17050 IPR041628 ChlI/MoxR, AAA lid domain BER93_RS17050 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS17075 IPR002559 Transposase, IS4-like BER93_RS17075 IPR008490 Transposase InsH, N-terminal BER93_RS17090 IPR038770 Sodium/solute symporter superfamily BER93_RS17090 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria BER93_RS17090 IPR018422 Cation/H+ exchanger, CPA1 family BER93_RS17090 IPR006153 Cation/H+ exchanger BER93_RS17110 IPR002559 Transposase, IS4-like BER93_RS17115 IPR036378 FAS1 domain superfamily BER93_RS17115 IPR000782 FAS1 domain BER93_RS17120 IPR036895 Uracil-DNA glycosylase-like domain superfamily BER93_RS17120 IPR005122 Uracil-DNA glycosylase-like BER93_RS17120 IPR005273 Uracil-DNA glycosylase family 4 BER93_RS17130 IPR036812 NADP-dependent oxidoreductase domain superfamily BER93_RS17130 IPR023210 NADP-dependent oxidoreductase domain BER93_RS17130 IPR018170 Aldo/keto reductase, conserved site BER93_RS17130 IPR020471 Aldo/keto reductase BER93_RS17140 IPR008753 Peptidase M13, N-terminal domain BER93_RS17140 IPR024079 Metallopeptidase, catalytic domain superfamily BER93_RS17140 IPR000718 Peptidase M13 BER93_RS17140 IPR018497 Peptidase M13, C-terminal domain BER93_RS17140 IPR042089 Peptidase M13, domain 2 BER93_RS17155 IPR002293 Amino acid/polyamine transporter I BER93_RS17170 IPR010287 Domain of unknown function DUF892 BER93_RS17170 IPR012347 Ferritin-like BER93_RS17170 IPR009078 Ferritin-like superfamily BER93_RS17175 IPR007760 Manganese catalase BER93_RS17175 IPR039377 Manganese catalase, ferritin-like di-iron-binding domain BER93_RS17175 IPR027407 Manganese catalase, C-terminal BER93_RS17175 IPR012347 Ferritin-like BER93_RS17175 IPR009078 Ferritin-like superfamily BER93_RS17190 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS17190 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase BER93_RS17190 IPR013656 PAS fold-4 BER93_RS17190 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BER93_RS17190 IPR000014 PAS domain BER93_RS17190 IPR000780 MCP methyltransferase, CheR-type BER93_RS17190 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BER93_RS17190 IPR035909 Methylesterase CheB, C-terminal BER93_RS17190 IPR035965 PAS domain superfamily BER93_RS17205 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER93_RS17205 IPR011006 CheY-like superfamily BER93_RS17205 IPR009057 Homeobox-like domain superfamily BER93_RS17205 IPR003593 AAA+ ATPase domain BER93_RS17205 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_RS17205 IPR001789 Signal transduction response regulator, receiver domain BER93_RS17205 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS17205 IPR002197 DNA binding HTH domain, Fis-type BER93_RS17205 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_RS17205 IPR010114 DNA-binding transcriptional regulator NtrC BER93_RS17205 IPR025944 Sigma-54 interaction domain, conserved site BER93_RS17230 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS17230 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS17230 IPR036291 NAD(P)-binding domain superfamily BER93_RS17235 IPR016040 NAD(P)-binding domain BER93_RS17235 IPR036291 NAD(P)-binding domain superfamily BER93_RS17235 IPR005886 UDP-glucose 4-epimerase BER93_RS17245 IPR004379 UDP-galactopyranose mutase BER93_RS17245 IPR015899 UDP-galactopyranose mutase, C-terminal BER93_RS17255 IPR039421 Type I protein exporter BER93_RS17255 IPR003593 AAA+ ATPase domain BER93_RS17255 IPR003439 ABC transporter-like BER93_RS17255 IPR017871 ABC transporter, conserved site BER93_RS17255 IPR011527 ABC transporter type 1, transmembrane domain BER93_RS17255 IPR036640 ABC transporter type 1, transmembrane domain superfamily BER93_RS17255 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS17270 IPR036291 NAD(P)-binding domain superfamily BER93_RS17270 IPR011032 GroES-like superfamily BER93_RS17270 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_RS17270 IPR013149 Alcohol dehydrogenase, C-terminal BER93_RS17270 IPR027399 Alcohol dehydrogenase GroES-associated BER93_RS17270 IPR013154 Alcohol dehydrogenase, N-terminal BER93_RS17310 IPR012910 TonB-dependent receptor, plug domain BER93_RS17310 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BER93_RS17310 IPR010105 TonB-dependent siderophore receptor BER93_RS17310 IPR000531 TonB-dependent receptor-like, beta-barrel BER93_RS17310 IPR039423 TonB-dependent receptor-like BER93_RS17310 IPR037066 TonB-dependent receptor, plug domain superfamily BER93_RS17325 IPR022501 Gallidermin ABC transporter, ATP-binding subunit BER93_RS17325 IPR017871 ABC transporter, conserved site BER93_RS17325 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS17325 IPR003439 ABC transporter-like BER93_RS17325 IPR003593 AAA+ ATPase domain BER93_RS17355 IPR002645 STAS domain BER93_RS17355 IPR036513 STAS domain superfamily BER93_RS17355 IPR018045 Sulphate anion transporter, conserved site BER93_RS17355 IPR011547 SLC26A/SulP transporter domain BER93_RS17355 IPR001902 SLC26A/SulP transporter BER93_RS17380 IPR009057 Homeobox-like domain superfamily BER93_RS17380 IPR002514 Transposase IS3/IS911family BER93_RS17400 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal BER93_RS17400 IPR004660 Pyruvate dehydrogenase E1 component BER93_RS17400 IPR041621 Pyruvate dehydrogenase E1 component, middle domain BER93_RS17400 IPR029061 Thiamin diphosphate-binding fold BER93_RS17400 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II BER93_RS17400 IPR005474 Transketolase, N-terminal BER93_RS17445 IPR020806 Polyketide synthase, phosphopantetheine-binding domain BER93_RS17445 IPR036736 ACP-like superfamily BER93_RS17445 IPR014043 Acyl transferase BER93_RS17445 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BER93_RS17445 IPR018201 Beta-ketoacyl synthase, active site BER93_RS17445 IPR014031 Beta-ketoacyl synthase, C-terminal BER93_RS17445 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_RS17445 IPR032821 Ketoacyl-synthetase, C-terminal extension BER93_RS17445 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER93_RS17445 IPR016039 Thiolase-like BER93_RS17445 IPR009081 Phosphopantetheine binding ACP domain BER93_RS17445 IPR013968 Polyketide synthase, ketoreductase domain BER93_RS17445 IPR036291 NAD(P)-binding domain superfamily BER93_RS17445 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BER93_RS17450 IPR002736 Triphosphoribosyl-dephospho-CoA protein BER93_RS17450 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG BER93_RS17455 IPR017557 Phosphoribosyl-dephospho-CoA transferase BER93_RS17465 IPR017556 Biotin-independent malonate decarboxylase, beta subunit BER93_RS17465 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal BER93_RS17465 IPR029045 ClpP/crotonase-like domain superfamily BER93_RS17465 IPR034733 Acetyl-CoA carboxylase BER93_RS17470 IPR009662 Malonate decarboxylase delta subunit BER93_RS17470 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein BER93_RS17485 IPR024473 Transposase, IS4, N-terminal BER93_RS17485 IPR012337 Ribonuclease H-like superfamily BER93_RS17485 IPR002559 Transposase, IS4-like BER93_RS17490 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BER93_RS17490 IPR023480 Uncharacterised protein family UPF0312/YceI BER93_RS17490 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER93_RS17495 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE BER93_RS17495 IPR029479 Nitroreductase BER93_RS17495 IPR000415 Nitroreductase-like BER93_RS17505 IPR003744 Queuosine precursor transporter BER93_RS17510 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase BER93_RS17510 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme BER93_RS17510 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain BER93_RS17520 IPR006311 Twin-arginine translocation pathway, signal sequence BER93_RS17520 IPR013658 SMP-30/Gluconolactonase/LRE-like region BER93_RS17520 IPR011042 Six-bladed beta-propeller, TolB-like BER93_RS17520 IPR005511 Senescence marker protein-30 (SMP-30) BER93_RS17530 IPR017821 Succinate CoA transferase BER93_RS17530 IPR037171 NagB/RpiA transferase-like BER93_RS17530 IPR003702 Acetyl-CoA hydrolase/transferase BER93_RS17530 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily BER93_RS17530 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain BER93_RS17540 IPR006219 DHAP synthase, class 1 BER93_RS17540 IPR006218 DAHP synthetase I/KDSA BER93_RS17540 IPR013785 Aldolase-type TIM barrel BER93_RS17555 IPR024473 Transposase, IS4, N-terminal BER93_RS17555 IPR012337 Ribonuclease H-like superfamily BER93_RS17555 IPR002559 Transposase, IS4-like BER93_RS17560 IPR027409 GroEL-like apical domain superfamily BER93_RS17560 IPR002423 Chaperonin Cpn60/TCP-1 family BER93_RS17560 IPR001844 Chaperonin Cpn60 BER93_RS17560 IPR018370 Chaperonin Cpn60, conserved site BER93_RS17560 IPR027413 GroEL-like equatorial domain superfamily BER93_RS17560 IPR027410 TCP-1-like chaperonin intermediate domain superfamily BER93_RS17565 IPR037124 GroES chaperonin superfamily BER93_RS17565 IPR018369 Chaperonin GroES, conserved site BER93_RS17565 IPR011032 GroES-like superfamily BER93_RS17565 IPR020818 GroES chaperonin family BER93_RS17580 IPR011322 Nitrogen regulatory PII-like, alpha/beta BER93_RS17580 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria BER93_RS17580 IPR004323 Divalent ion tolerance protein, CutA BER93_RS17580 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER93_RS17585 IPR017937 Thioredoxin, conserved site BER93_RS17585 IPR036249 Thioredoxin-like superfamily BER93_RS17585 IPR022910 Thiol:disulphide interchange protein DsbD BER93_RS17585 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily BER93_RS17585 IPR013766 Thioredoxin domain BER93_RS17585 IPR035671 DsbD gamma BER93_RS17585 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BER93_RS17585 IPR003834 Cytochrome C biogenesis protein, transmembrane domain BER93_RS17600 IPR008490 Transposase InsH, N-terminal BER93_RS17615 IPR001584 Integrase, catalytic core BER93_RS17615 IPR012337 Ribonuclease H-like superfamily BER93_RS17615 IPR036397 Ribonuclease H superfamily BER93_RS17615 IPR025948 HTH-like domain BER93_RS17620 IPR002514 Transposase IS3/IS911family BER93_RS17620 IPR009057 Homeobox-like domain superfamily BER93_RS17625 IPR036291 NAD(P)-binding domain superfamily BER93_RS17625 IPR016040 NAD(P)-binding domain BER93_RS17625 IPR000534 Semialdehyde dehydrogenase, NAD-binding BER93_RS17630 IPR013780 Glycosyl hydrolase, all-beta BER93_RS17630 IPR014756 Immunoglobulin E-set BER93_RS17630 IPR013783 Immunoglobulin-like fold BER93_RS17630 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_RS17630 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_RS17630 IPR017853 Glycoside hydrolase superfamily BER93_RS17630 IPR011837 Glycogen debranching enzyme, GlgX type BER93_RS17640 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_RS17640 IPR017853 Glycoside hydrolase superfamily BER93_RS17640 IPR012767 Maltooligosyl trehalose synthase BER93_RS17645 IPR017853 Glycoside hydrolase superfamily BER93_RS17645 IPR003385 Glycoside hydrolase, family 77 BER93_RS17650 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_RS17650 IPR014756 Immunoglobulin E-set BER93_RS17650 IPR013783 Immunoglobulin-like fold BER93_RS17650 IPR017853 Glycoside hydrolase superfamily BER93_RS17650 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) BER93_RS17650 IPR013780 Glycosyl hydrolase, all-beta BER93_RS17650 IPR012768 Malto-oligosyltrehalose trehalohydrolase BER93_RS17650 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_RS17655 IPR037439 1,4-alpha-glucan-branching enzyme BER93_RS17655 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB BER93_RS17655 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_RS17655 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_RS17655 IPR013780 Glycosyl hydrolase, all-beta BER93_RS17655 IPR017853 Glycoside hydrolase superfamily BER93_RS17655 IPR014756 Immunoglobulin E-set BER93_RS17655 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta BER93_RS17655 IPR013783 Immunoglobulin-like fold BER93_RS17660 IPR011835 Bacterial/plant glycogen synthase BER93_RS17660 IPR013534 Starch synthase, catalytic domain BER93_RS17660 IPR001296 Glycosyl transferase, family 1 BER93_RS17665 IPR000160 GGDEF domain BER93_RS17665 IPR029787 Nucleotide cyclase BER93_RS17670 IPR013785 Aldolase-type TIM barrel BER93_RS17670 IPR003790 Glycosyl hydrolase-like 10 BER93_RS17670 IPR017853 Glycoside hydrolase superfamily BER93_RS17675 IPR008526 Inner membrane protein YedI BER93_RS17680 IPR004147 UbiB domain BER93_RS17680 IPR000719 Protein kinase domain BER93_RS17680 IPR011009 Protein kinase-like domain superfamily BER93_RS17685 IPR024393 Mechanosensitive ion channel MscS, porin domain BER93_RS17685 IPR006685 Mechanosensitive ion channel MscS BER93_RS17685 IPR011066 Mechanosensitive ion channel MscS, C-terminal BER93_RS17685 IPR006686 Mechanosensitive ion channel MscS, conserved site BER93_RS17685 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 BER93_RS17685 IPR023408 Mechanosensitive ion channel MscS domain superfamily BER93_RS17685 IPR025692 Mechanosensitive ion channel inner membrane domain 1 BER93_RS17685 IPR010920 LSM domain superfamily BER93_RS17700 IPR006370 4-hydroxybenzoate polyprenyltransferase-like BER93_RS17700 IPR039653 Prenyltransferase BER93_RS17700 IPR000537 UbiA prenyltransferase family BER93_RS17700 IPR030470 UbiA prenyltransferase conserved site BER93_RS17705 IPR005222 Competence protein ComF BER93_RS17705 IPR000836 Phosphoribosyltransferase domain BER93_RS17705 IPR029057 Phosphoribosyltransferase-like BER93_RS17710 IPR006638 Elp3/MiaB/NifB BER93_RS17710 IPR013785 Aldolase-type TIM barrel BER93_RS17710 IPR010722 Biotin and thiamin synthesis-associated domain BER93_RS17710 IPR024177 Biotin synthase BER93_RS17710 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB BER93_RS17710 IPR007197 Radical SAM BER93_RS17715 IPR004839 Aminotransferase, class I/classII BER93_RS17715 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type BER93_RS17715 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS17715 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS17715 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS17715 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria BER93_RS17725 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS17725 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase BER93_RS17725 IPR029058 Alpha/Beta hydrolase fold BER93_RS17730 IPR036291 NAD(P)-binding domain superfamily BER93_RS17730 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS17730 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS17740 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS17740 IPR041698 Methyltransferase domain 25 BER93_RS17740 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC BER93_RS17760 IPR001926 Pyridoxal-phosphate dependent enzyme BER93_RS17760 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_RS17770 IPR020595 MnmG-related, conserved site BER93_RS17770 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related BER93_RS17770 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG BER93_RS17770 IPR026904 GidA associated domain 3 BER93_RS17770 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS17795 IPR018356 Transcription regulator, HTH DeoR-type, conserved site BER93_RS17795 IPR037171 NagB/RpiA transferase-like BER93_RS17795 IPR014036 DeoR C-terminal sensor domain BER93_RS17795 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS17795 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS17795 IPR001034 DeoR-type HTH domain BER93_RS17800 IPR006076 FAD dependent oxidoreductase BER93_RS17800 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS17800 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase BER93_RS17800 IPR031656 Alpha-glycerophosphate oxidase, C-terminal BER93_RS17800 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily BER93_RS17805 IPR000425 Major intrinsic protein BER93_RS17805 IPR023271 Aquaporin-like BER93_RS17805 IPR022357 Major intrinsic protein, conserved site BER93_RS17810 IPR018483 Carbohydrate kinase, FGGY, conserved site BER93_RS17810 IPR018485 Carbohydrate kinase, FGGY, C-terminal BER93_RS17810 IPR000577 Carbohydrate kinase, FGGY BER93_RS17810 IPR018484 Carbohydrate kinase, FGGY, N-terminal BER93_RS17810 IPR005999 Glycerol kinase BER93_RS17820 IPR009057 Homeobox-like domain superfamily BER93_RS17820 IPR002514 Transposase IS3/IS911family BER93_RS17835 IPR001567 Peptidase M3A/M3B catalytic domain BER93_RS17835 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BER93_RS17850 IPR000352 Peptide chain release factor class I BER93_RS17880 IPR004147 UbiB domain BER93_RS17880 IPR010232 Probable protein kinase UbiB BER93_RS17880 IPR011009 Protein kinase-like domain superfamily BER93_RS17900 IPR036291 NAD(P)-binding domain superfamily BER93_RS17900 IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase BER93_RS17905 IPR000873 AMP-dependent synthetase/ligase BER93_RS17905 IPR020845 AMP-binding, conserved site BER93_RS17905 IPR042099 AMP-dependent synthetase-like superfamily BER93_RS17910 IPR005358 Putative zinc- or iron-chelating domain containing protein BER93_RS17915 IPR000639 Epoxide hydrolase-like BER93_RS17915 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS17915 IPR029058 Alpha/Beta hydrolase fold BER93_RS17935 IPR000361 FeS cluster biogenesis BER93_RS17935 IPR017870 FeS cluster insertion, C-terminal, conserved site BER93_RS17935 IPR023063 FeS cluster insertion protein ErpA BER93_RS17935 IPR035903 HesB-like domain superfamily BER93_RS17935 IPR016092 FeS cluster insertion protein BER93_RS17955 IPR035919 EAL domain superfamily BER93_RS17955 IPR001633 EAL domain BER93_RS17955 IPR000160 GGDEF domain BER93_RS17955 IPR005330 MHYT domain BER93_RS17955 IPR029787 Nucleotide cyclase BER93_RS17960 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS17960 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS17960 IPR001789 Signal transduction response regulator, receiver domain BER93_RS17960 IPR005467 Histidine kinase domain BER93_RS17960 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS17960 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS17960 IPR019247 Histidine kinase BarA, N-terminal BER93_RS17960 IPR036641 HPT domain superfamily BER93_RS17960 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS17960 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_RS17960 IPR003660 HAMP domain BER93_RS17960 IPR011006 CheY-like superfamily BER93_RS17965 IPR008331 Ferritin/DPS protein domain BER93_RS17965 IPR009078 Ferritin-like superfamily BER93_RS17965 IPR002024 Bacterioferritin BER93_RS17965 IPR009040 Ferritin-like diiron domain BER93_RS17965 IPR012347 Ferritin-like BER93_RS17975 IPR000086 NUDIX hydrolase domain BER93_RS17975 IPR022927 RNA pyrophosphohydrolase RppH BER93_RS17975 IPR020084 NUDIX hydrolase, conserved site BER93_RS17975 IPR015797 NUDIX hydrolase-like domain superfamily BER93_RS17990 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS17990 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS17990 IPR023035 Ribosomal protein S9, bacterial/plastid BER93_RS17990 IPR000754 Ribosomal protein S9 BER93_RS17990 IPR020574 Ribosomal protein S9, conserved site BER93_RS17995 IPR005822 Ribosomal protein L13 BER93_RS17995 IPR005823 Ribosomal protein L13, bacterial-type BER93_RS17995 IPR023563 Ribosomal protein L13, conserved site BER93_RS17995 IPR036899 Ribosomal protein L13 superfamily BER93_RS18000 IPR011566 Ubiquinone biosynthesis protein Coq7 BER93_RS18000 IPR009078 Ferritin-like superfamily BER93_RS18000 IPR012347 Ferritin-like BER93_RS18005 IPR000390 Small multidrug resistance protein family BER93_RS18010 IPR016067 S-adenosylmethionine decarboxylase, core BER93_RS18010 IPR009165 S-adenosylmethionine decarboxylase, bacterial BER93_RS18010 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic BER93_RS18015 IPR018335 Transcription regulator HTH, Crp-type, conserved site BER93_RS18015 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS18015 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS18015 IPR018490 Cyclic nucleotide-binding-like BER93_RS18015 IPR000595 Cyclic nucleotide-binding domain BER93_RS18015 IPR012318 Crp-type HTH domain BER93_RS18015 IPR014710 RmlC-like jelly roll fold BER93_RS18025 IPR013798 Indole-3-glycerol phosphate synthase BER93_RS18025 IPR001468 Indole-3-glycerol phosphate synthase, conserved site BER93_RS18025 IPR011060 Ribulose-phosphate binding barrel BER93_RS18025 IPR013785 Aldolase-type TIM barrel BER93_RS18030 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily BER93_RS18030 IPR017459 Glycosyl transferase family 3, N-terminal domain BER93_RS18030 IPR000312 Glycosyl transferase, family 3 BER93_RS18030 IPR005940 Anthranilate phosphoribosyl transferase BER93_RS18030 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily BER93_RS18040 IPR029062 Class I glutamine amidotransferase-like BER93_RS18040 IPR017926 Glutamine amidotransferase BER93_RS18040 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain BER93_RS18060 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS18060 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS18060 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS18060 IPR012703 2-aminoethylphosphonate--pyruvate transaminase BER93_RS18060 IPR000192 Aminotransferase class V domain BER93_RS18060 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase BER93_RS18065 IPR015421 Pyridoxal phosphate-dependent transferase, major domain BER93_RS18065 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 BER93_RS18065 IPR015424 Pyridoxal phosphate-dependent transferase BER93_RS18065 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase BER93_RS18065 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme BER93_RS18085 IPR029062 Class I glutamine amidotransferase-like BER93_RS18085 IPR005697 Homoserine O-succinyltransferase MetA BER93_RS18085 IPR033752 MetA family BER93_RS18090 IPR036651 Glutamine synthetase, N-terminal domain superfamily BER93_RS18090 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_RS18090 IPR008146 Glutamine synthetase, catalytic domain BER93_RS18095 IPR005801 ADC synthase BER93_RS18095 IPR006805 Anthranilate synthase component I, N-terminal BER93_RS18095 IPR005256 Anthranilate synthase component I, PabB-like BER93_RS18095 IPR015890 Chorismate-utilising enzyme, C-terminal BER93_RS18095 IPR019999 Anthranilate synthase component I-like BER93_RS18100 IPR005218 Diacylglycerol/lipid kinase BER93_RS18100 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal BER93_RS18100 IPR001206 Diacylglycerol kinase, catalytic domain BER93_RS18100 IPR022433 Lipid kinase YegS BER93_RS18100 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily BER93_RS18105 IPR000182 GNAT domain BER93_RS18105 IPR016181 Acyl-CoA N-acyltransferase BER93_RS18110 IPR011060 Ribulose-phosphate binding barrel BER93_RS18110 IPR000056 Ribulose-phosphate 3-epimerase-like BER93_RS18110 IPR026019 Ribulose-phosphate 3-epimerase BER93_RS18110 IPR013785 Aldolase-type TIM barrel BER93_RS18120 IPR036869 Chaperone J-domain superfamily BER93_RS18120 IPR029024 TerB-like BER93_RS18120 IPR001623 DnaJ domain BER93_RS18120 IPR007791 Co-chaperone DjlA, N-terminal BER93_RS18120 IPR023749 Co-chaperone DjlA BER93_RS18125 IPR028923 SAICAR synthetase/ADE2, N-terminal BER93_RS18125 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase BER93_RS18125 IPR018236 SAICAR synthetase, conserved site BER93_RS18160 IPR005663 Monovalent cation proton antiporter subunit A BER93_RS18160 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit BER93_RS18160 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal BER93_RS18160 IPR005281 Monovalent cation:proton antiporter, subunit B BER93_RS18160 IPR007182 Na+/H+ antiporter MnhB subunit-related protein BER93_RS18160 IPR025383 Domain of unknown function DUF4040 BER93_RS18165 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like BER93_RS18165 IPR006673 Mnh complex subunit C1 BER93_RS18170 IPR004775 Na(+)/H(+) antiporter subunit D1 BER93_RS18170 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit BER93_RS18180 IPR007208 Na(+)/H(+) antiporter subunit F-like BER93_RS18185 IPR005133 Na+/H+ antiporter subunit G BER93_RS18190 IPR002559 Transposase, IS4-like BER93_RS18190 IPR008490 Transposase InsH, N-terminal BER93_RS18220 IPR000755 D-alanyl-D-alanine dipeptidase BER93_RS18220 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily BER93_RS18225 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily BER93_RS18225 IPR002502 N-acetylmuramoyl-L-alanine amidase domain BER93_RS18225 IPR036365 PGBD-like superfamily BER93_RS18225 IPR036366 PGBD superfamily BER93_RS18235 IPR034603 Dipeptide epimerase BER93_RS18235 IPR036849 Enolase-like, C-terminal domain superfamily BER93_RS18235 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BER93_RS18235 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BER93_RS18235 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site BER93_RS18235 IPR029065 Enolase C-terminal domain-like BER93_RS18235 IPR029017 Enolase-like, N-terminal BER93_RS18245 IPR002293 Amino acid/polyamine transporter I BER93_RS18245 IPR004754 Amino acid antiporter BER93_RS18265 IPR012938 Glucose/Sorbosone dehydrogenase BER93_RS18265 IPR011042 Six-bladed beta-propeller, TolB-like BER93_RS18265 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase BER93_RS18270 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily BER93_RS18270 IPR001764 Glycoside hydrolase, family 3, N-terminal BER93_RS18270 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily BER93_RS18270 IPR002772 Glycoside hydrolase family 3 C-terminal domain BER93_RS18270 IPR019800 Glycoside hydrolase, family 3, active site BER93_RS18270 IPR026891 Fibronectin type III-like domain BER93_RS18270 IPR017853 Glycoside hydrolase superfamily BER93_RS18270 IPR013783 Immunoglobulin-like fold BER93_RS18275 IPR006157 Dihydroneopterin aldolase/epimerase domain BER93_RS18275 IPR006156 Dihydroneopterin aldolase BER93_RS18280 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD BER93_RS18280 IPR017861 Kae1/TsaD family BER93_RS18280 IPR000905 Gcp-like domain BER93_RS18280 IPR017860 Peptidase M22, conserved site BER93_RS18285 IPR018278 Ribosomal protein S21, conserved site BER93_RS18285 IPR001911 Ribosomal protein S21 BER93_RS18285 IPR038380 Ribosomal protein S21 superfamily BER93_RS18295 IPR023679 Uncharacterised protein family UPF0761, bacterial BER93_RS18295 IPR017039 Virulence factor BrkB BER93_RS18300 IPR019475 DNA primase, DnaB-helicase binding domain BER93_RS18300 IPR006295 DNA primase, DnaG BER93_RS18300 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily BER93_RS18300 IPR013264 DNA primase, catalytic core, N-terminal BER93_RS18300 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BER93_RS18300 IPR013173 DNA primase DnaG, DnaB-binding domain BER93_RS18300 IPR036977 DNA Primase, CHC2-type zinc finger BER93_RS18300 IPR030846 DNA primase DnaG, bacteria BER93_RS18300 IPR034151 Bacterial DnaG primase, TOPRIM domain BER93_RS18300 IPR006171 TOPRIM domain BER93_RS18300 IPR002694 Zinc finger, CHC2-type BER93_RS18305 IPR016833 Putative sodium bile acid cotransporter BER93_RS18305 IPR038770 Sodium/solute symporter superfamily BER93_RS18315 IPR006369 Protohaem IX farnesyltransferase BER93_RS18315 IPR030470 UbiA prenyltransferase conserved site BER93_RS18315 IPR000537 UbiA prenyltransferase family BER93_RS18340 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle BER93_RS18340 IPR035973 Cytochrome c oxidase subunit III-like superfamily BER93_RS18340 IPR000298 Cytochrome c oxidase subunit III-like BER93_RS18340 IPR033945 Cytochrome c oxidase subunit III domain BER93_RS18340 IPR024791 Cytochrome c oxidase subunit III BER93_RS18345 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily BER93_RS18345 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 BER93_RS18350 IPR000883 Cytochrome c oxidase subunit I BER93_RS18350 IPR033944 Cytochrome c oxidase subunit I domain BER93_RS18350 IPR014241 Cytochrome c oxidase, subunit I bacterial type BER93_RS18350 IPR023616 Cytochrome c oxidase-like, subunit I domain BER93_RS18350 IPR036927 Cytochrome c oxidase-like, subunit I superfamily BER93_RS18350 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site BER93_RS18355 IPR008972 Cupredoxin BER93_RS18355 IPR034210 Cytochrome c oxidase subunit 2, C-terminal BER93_RS18355 IPR014222 Cytochrome c oxidase, subunit II BER93_RS18355 IPR001505 Copper centre Cu(A) BER93_RS18355 IPR002429 Cytochrome c oxidase subunit II-like C-terminal BER93_RS18355 IPR005728 Rickettsial palindromic element BER93_RS18355 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily BER93_RS18355 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain BER93_RS18365 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain BER93_RS18365 IPR010985 Ribbon-helix-helix BER93_RS18365 IPR002872 Proline dehydrogenase domain BER93_RS18365 IPR024082 Proline dehydrogenase PutA, domain II BER93_RS18365 IPR024090 Proline dehydrogenase PutA, domain I BER93_RS18365 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_RS18365 IPR016160 Aldehyde dehydrogenase, cysteine active site BER93_RS18365 IPR016161 Aldehyde/histidinol dehydrogenase BER93_RS18365 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_RS18365 IPR015590 Aldehyde dehydrogenase domain BER93_RS18365 IPR013321 Arc-type ribbon-helix-helix BER93_RS18365 IPR025703 Bifunctional protein PutA BER93_RS18365 IPR024089 Proline dehydrogenase PutA, domain I/II BER93_RS18365 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 BER93_RS18365 IPR029041 FAD-linked oxidoreductase-like BER93_RS18365 IPR029510 Aldehyde dehydrogenase, glutamic acid active site BER93_RS18370 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 BER93_RS18370 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_RS18370 IPR002305 Aminoacyl-tRNA synthetase, class Ic BER93_RS18370 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS18370 IPR002942 RNA-binding S4 domain BER93_RS18370 IPR036986 RNA-binding S4 domain superfamily BER93_RS18370 IPR002307 Tyrosine-tRNA ligase BER93_RS18370 IPR024088 Tyrosine-tRNA ligase, bacterial-type BER93_RS18375 IPR011055 Duplicated hybrid motif BER93_RS18375 IPR016047 Peptidase M23 BER93_RS18375 IPR007340 Opacity-associated protein A BER93_RS18380 IPR005338 Anhydro-N-acetylmuramic acid kinase BER93_RS18390 IPR036259 MFS transporter superfamily BER93_RS18390 IPR011701 Major facilitator superfamily BER93_RS18390 IPR020846 Major facilitator superfamily domain BER93_RS18390 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 BER93_RS18400 IPR020847 AP endonuclease 1, binding site BER93_RS18400 IPR020848 AP endonuclease 1, conserved site BER93_RS18400 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BER93_RS18400 IPR005135 Endonuclease/exonuclease/phosphatase BER93_RS18400 IPR004808 AP endonuclease 1 BER93_RS18405 IPR004467 Orotate phosphoribosyl transferase domain BER93_RS18405 IPR023031 Orotate phosphoribosyltransferase BER93_RS18405 IPR029057 Phosphoribosyltransferase-like BER93_RS18405 IPR000836 Phosphoribosyltransferase domain BER93_RS18415 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS18415 IPR025669 AAA domain BER93_RS18420 IPR003115 ParB/Sulfiredoxin BER93_RS18420 IPR004437 ParB/RepB/Spo0J partition protein BER93_RS18420 IPR041468 ParB/Spo0J, HTH domain BER93_RS18420 IPR036086 ParB/Sulfiredoxin superfamily BER93_RS18435 IPR001509 NAD-dependent epimerase/dehydratase BER93_RS18435 IPR036291 NAD(P)-binding domain superfamily BER93_RS18440 IPR029044 Nucleotide-diphospho-sugar transferases BER93_RS18440 IPR001173 Glycosyltransferase 2-like BER93_RS18455 IPR005841 Alpha-D-phosphohexomutase superfamily BER93_RS18455 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily BER93_RS18455 IPR005843 Alpha-D-phosphohexomutase, C-terminal BER93_RS18455 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III BER93_RS18455 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II BER93_RS18455 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III BER93_RS18455 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I BER93_RS18455 IPR016066 Alpha-D-phosphohexomutase, conserved site BER93_RS18460 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase BER93_RS18460 IPR033704 dUTPase, trimeric BER93_RS18460 IPR036157 dUTPase-like superfamily BER93_RS18460 IPR029054 dUTPase-like BER93_RS18465 IPR003382 Flavoprotein BER93_RS18465 IPR036551 Flavin prenyltransferase-like BER93_RS18465 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal BER93_RS18465 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC BER93_RS18465 IPR035929 CoaB-like superfamily BER93_RS18470 IPR037518 MPN domain BER93_RS18470 IPR025657 RadC-like JAB domain BER93_RS18470 IPR010994 RuvA domain 2-like BER93_RS18470 IPR001405 Uncharacterised protein family UPF0758 BER93_RS18470 IPR020891 Uncharacterised protein family UPF0758, conserved site BER93_RS18475 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily BER93_RS18475 IPR005148 Arginyl tRNA synthetase N-terminal domain BER93_RS18475 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding BER93_RS18475 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS18475 IPR008909 DALR anticodon binding BER93_RS18475 IPR001278 Arginine-tRNA ligase BER93_RS18475 IPR035684 Arginyl-tRNA synthetase, catalytic core domain BER93_RS18475 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_RS18485 IPR036291 NAD(P)-binding domain superfamily BER93_RS18485 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS18485 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS18515 IPR004276 Glycosyltransferase family 28, N-terminal domain BER93_RS18520 IPR000873 AMP-dependent synthetase/ligase BER93_RS18520 IPR025110 AMP-binding enzyme, C-terminal domain BER93_RS18520 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily BER93_RS18520 IPR042099 AMP-dependent synthetase-like superfamily BER93_RS18520 IPR001242 Condensation domain BER93_RS18520 IPR020806 Polyketide synthase, phosphopantetheine-binding domain BER93_RS18520 IPR009081 Phosphopantetheine binding ACP domain BER93_RS18520 IPR020845 AMP-binding, conserved site BER93_RS18520 IPR036736 ACP-like superfamily BER93_RS18520 IPR029058 Alpha/Beta hydrolase fold BER93_RS18520 IPR010071 Amino acid adenylation domain BER93_RS18520 IPR001031 Thioesterase BER93_RS18520 IPR020802 Polyketide synthase, thioesterase domain BER93_RS18525 IPR008490 Transposase InsH, N-terminal BER93_RS18530 IPR003660 HAMP domain BER93_RS18530 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS18530 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS18530 IPR005467 Histidine kinase domain BER93_RS18530 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS18530 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS18530 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS18535 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS18535 IPR039420 Transcriptional regulatory protein WalR-like BER93_RS18535 IPR001867 OmpR/PhoB-type DNA-binding domain BER93_RS18535 IPR011006 CheY-like superfamily BER93_RS18535 IPR001789 Signal transduction response regulator, receiver domain BER93_RS18545 IPR004653 tRNA-dihydrouridine(20/20a) synthase BER93_RS18545 IPR018517 tRNA-dihydrouridine synthase, conserved site BER93_RS18545 IPR013785 Aldolase-type TIM barrel BER93_RS18545 IPR035587 DUS-like, FMN-binding domain BER93_RS18545 IPR001269 tRNA-dihydrouridine synthase BER93_RS18565 IPR018028 Catalase, mono-functional, haem-containing BER93_RS18565 IPR024708 Catalase active site BER93_RS18565 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 BER93_RS18565 IPR011614 Catalase core domain BER93_RS18565 IPR037060 Catalase core domain superfamily BER93_RS18565 IPR002226 Catalase haem-binding site BER93_RS18565 IPR010582 Catalase immune-responsive domain BER93_RS18565 IPR020835 Catalase superfamily BER93_RS18570 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type BER93_RS18570 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS18570 IPR001650 Helicase, C-terminal BER93_RS18570 IPR039000 ATP-dependent DNA helicase DinG BER93_RS18570 IPR010614 DEAD2 BER93_RS18570 IPR006555 ATP-dependent helicase, C-terminal BER93_RS18580 IPR041121 SDH, C-terminal BER93_RS18580 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BER93_RS18580 IPR022893 Shikimate dehydrogenase family BER93_RS18580 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal BER93_RS18580 IPR011342 Shikimate dehydrogenase BER93_RS18580 IPR036291 NAD(P)-binding domain superfamily BER93_RS18590 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_RS18590 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain BER93_RS18590 IPR008254 Flavodoxin/nitric oxide synthase BER93_RS18590 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria BER93_RS18590 IPR001094 Flavodoxin-like BER93_RS18590 IPR017938 Riboflavin synthase-like beta-barrel BER93_RS18590 IPR017927 FAD-binding domain, ferredoxin reductase-type BER93_RS18590 IPR029039 Flavoprotein-like superfamily BER93_RS18590 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase BER93_RS18590 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding BER93_RS18590 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily BER93_RS18590 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BER93_RS18595 IPR001731 Delta-aminolevulinic acid dehydratase BER93_RS18595 IPR013785 Aldolase-type TIM barrel BER93_RS18595 IPR030656 Delta-aminolevulinic acid dehydratase, active site BER93_RS18610 IPR008490 Transposase InsH, N-terminal BER93_RS18635 IPR003824 Undecaprenyl-diphosphatase UppP BER93_RS18640 IPR027303 Glutamine synthetase, glycine-rich site BER93_RS18640 IPR036651 Glutamine synthetase, N-terminal domain superfamily BER93_RS18640 IPR004809 Glutamine synthetase type I BER93_RS18640 IPR008147 Glutamine synthetase, beta-Grasp domain BER93_RS18640 IPR001637 Glutamine synthetase class-I, adenylation site BER93_RS18640 IPR008146 Glutamine synthetase, catalytic domain BER93_RS18640 IPR027302 Glutamine synthetase, N-terminal conserved site BER93_RS18640 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_RS18645 IPR002187 Nitrogen regulatory protein PII BER93_RS18645 IPR011322 Nitrogen regulatory PII-like, alpha/beta BER93_RS18645 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER93_RS18645 IPR017918 Nitrogen regulatory protein PII, conserved site BER93_RS18645 IPR002332 Nitrogen regulatory protein P-II, urydylation site BER93_RS18650 IPR029020 Ammonium/urea transporter BER93_RS18650 IPR001905 Ammonium transporter BER93_RS18650 IPR018047 Ammonium transporter, conserved site BER93_RS18650 IPR024041 Ammonium transporter AmtB-like domain BER93_RS18655 IPR000014 PAS domain BER93_RS18655 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_RS18655 IPR013767 PAS fold BER93_RS18655 IPR035965 PAS domain superfamily BER93_RS18655 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS18655 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS18655 IPR005467 Histidine kinase domain BER93_RS18655 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain BER93_RS18655 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily BER93_RS18660 IPR010114 DNA-binding transcriptional regulator NtrC BER93_RS18660 IPR025944 Sigma-54 interaction domain, conserved site BER93_RS18660 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER93_RS18660 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_RS18660 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_RS18660 IPR001789 Signal transduction response regulator, receiver domain BER93_RS18660 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS18660 IPR009057 Homeobox-like domain superfamily BER93_RS18660 IPR003593 AAA+ ATPase domain BER93_RS18660 IPR002197 DNA binding HTH domain, Fis-type BER93_RS18660 IPR011006 CheY-like superfamily BER93_RS18665 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily BER93_RS18665 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone BER93_RS18665 IPR018152 Superoxide dismutase, copper/zinc, binding site BER93_RS18665 IPR001424 Superoxide dismutase, copper/zinc binding domain BER93_RS18670 IPR001424 Superoxide dismutase, copper/zinc binding domain BER93_RS18670 IPR018152 Superoxide dismutase, copper/zinc, binding site BER93_RS18670 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone BER93_RS18670 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily BER93_RS18680 IPR025161 Putative transposase IS4/IS5 family BER93_RS18700 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase BER93_RS18700 IPR002123 Phospholipid/glycerol acyltransferase BER93_RS18705 IPR003736 Phenylacetic acid degradation-related domain BER93_RS18705 IPR029069 HotDog domain superfamily BER93_RS18705 IPR006683 Thioesterase domain BER93_RS18710 IPR025202 Phospholipase D-like domain BER93_RS18710 IPR001736 Phospholipase D/Transphosphatidylase BER93_RS18720 IPR029033 Histidine phosphatase superfamily BER93_RS18720 IPR013078 Histidine phosphatase superfamily, clade-1 BER93_RS18725 IPR002744 MIP18 family-like BER93_RS18725 IPR019591 Mrp/NBP35 ATP-binding protein BER93_RS18725 IPR034904 Fe-S cluster assembly domain superfamily BER93_RS18725 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS18725 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 BER93_RS18725 IPR000808 Mrp, conserved site BER93_RS18760 IPR017806 Ergothioneine biosynthesis protein EgtB BER93_RS18760 IPR042095 Sulfatase-modifying factor enzyme superfamily BER93_RS18760 IPR034660 DinB/YfiT-like putative metalloenzymes BER93_RS18760 IPR024775 DinB-like domain BER93_RS18760 IPR016187 C-type lectin fold BER93_RS18760 IPR005532 Sulfatase-modifying factor enzyme BER93_RS18760 IPR032890 Hercynine oxygenase, Actinobacteria BER93_RS18770 IPR035906 MetI-like superfamily BER93_RS18770 IPR000515 ABC transporter type 1, transmembrane domain MetI-like BER93_RS18775 IPR003593 AAA+ ATPase domain BER93_RS18775 IPR017871 ABC transporter, conserved site BER93_RS18775 IPR003439 ABC transporter-like BER93_RS18775 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS18785 IPR003439 ABC transporter-like BER93_RS18785 IPR003593 AAA+ ATPase domain BER93_RS18785 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS18785 IPR017871 ABC transporter, conserved site BER93_RS18790 IPR000485 AsnC-type HTH domain BER93_RS18790 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BER93_RS18790 IPR011008 Dimeric alpha-beta barrel BER93_RS18790 IPR019888 Transcription regulator AsnC-type BER93_RS18790 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BER93_RS18790 IPR036390 Winged helix DNA-binding domain superfamily BER93_RS18790 IPR036388 Winged helix-like DNA-binding domain superfamily BER93_RS18795 IPR005960 Phenylalanine-4-hydroxylase, monomeric form BER93_RS18795 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily BER93_RS18795 IPR036951 Aromatic amino acid hydroxylase superfamily BER93_RS18795 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site BER93_RS18795 IPR001273 Aromatic amino acid hydroxylase BER93_RS18795 IPR019774 Aromatic amino acid hydroxylase, C-terminal BER93_RS18800 IPR002347 Short-chain dehydrogenase/reductase SDR BER93_RS18800 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_RS18800 IPR036291 NAD(P)-binding domain superfamily BER93_RS18800 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase BER93_RS18805 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal BER93_RS18805 IPR021120 KduI/IolB isomerase BER93_RS18805 IPR014710 RmlC-like jelly roll fold BER93_RS18805 IPR007045 5-keto 4-deoxyuronate isomerase BER93_RS18805 IPR011051 RmlC-like cupin domain superfamily BER93_RS18815 IPR000843 LacI-type HTH domain BER93_RS18815 IPR023588 Transcription regulator HTH, PurR BER93_RS18815 IPR028082 Periplasmic binding protein-like I BER93_RS18815 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS18830 IPR004682 TRAP transporter solute receptor, DctP family BER93_RS18830 IPR018389 TRAP transporter solute receptor DctP/TeaA BER93_RS18830 IPR038404 TRAP transporter solute receptor DctP superfamily BER93_RS18840 IPR013830 SGNH hydrolase-type esterase domain BER93_RS18840 IPR036514 SGNH hydrolase superfamily BER93_RS18840 IPR013094 Alpha/beta hydrolase fold-3 BER93_RS18840 IPR029058 Alpha/Beta hydrolase fold BER93_RS18845 IPR002018 Carboxylesterase, type B BER93_RS18845 IPR019826 Carboxylesterase type B, active site BER93_RS18845 IPR029058 Alpha/Beta hydrolase fold BER93_RS18850 IPR036812 NADP-dependent oxidoreductase domain superfamily BER93_RS18850 IPR023210 NADP-dependent oxidoreductase domain BER93_RS18855 IPR013783 Immunoglobulin-like fold BER93_RS18855 IPR014756 Immunoglobulin E-set BER93_RS18855 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB BER93_RS18855 IPR037439 1,4-alpha-glucan-branching enzyme BER93_RS18855 IPR013780 Glycosyl hydrolase, all-beta BER93_RS18855 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_RS18855 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_RS18855 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta BER93_RS18855 IPR017853 Glycoside hydrolase superfamily BER93_RS18860 IPR017853 Glycoside hydrolase superfamily BER93_RS18860 IPR012810 Trehalose synthase/alpha-amylase, N-terminal BER93_RS18860 IPR032091 Maltogenic Amylase, C-terminal BER93_RS18860 IPR013780 Glycosyl hydrolase, all-beta BER93_RS18860 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_RS18865 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S BER93_RS18865 IPR013783 Immunoglobulin-like fold BER93_RS18865 IPR017853 Glycoside hydrolase superfamily BER93_RS18865 IPR013780 Glycosyl hydrolase, all-beta BER93_RS18865 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_RS18865 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase BER93_RS18920 IPR002559 Transposase, IS4-like BER93_RS18925 IPR025161 Putative transposase IS4/IS5 family BER93_RS18935 IPR017853 Glycoside hydrolase superfamily BER93_RS18935 IPR018087 Glycoside hydrolase, family 5, conserved site BER93_RS18935 IPR001547 Glycoside hydrolase, family 5 BER93_RS18945 IPR018087 Glycoside hydrolase, family 5, conserved site BER93_RS18945 IPR001547 Glycoside hydrolase, family 5 BER93_RS18945 IPR017853 Glycoside hydrolase superfamily BER93_RS18950 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_RS18950 IPR011032 GroES-like superfamily BER93_RS18950 IPR036291 NAD(P)-binding domain superfamily BER93_RS18950 IPR013154 Alcohol dehydrogenase, N-terminal BER93_RS18950 IPR013149 Alcohol dehydrogenase, C-terminal BER93_RS18950 IPR020843 Polyketide synthase, enoylreductase domain BER93_RS18950 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER93_RS18955 IPR028261 Dihydroprymidine dehydrogenase domain II BER93_RS18955 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_RS18955 IPR009051 Alpha-helical ferredoxin BER93_RS18955 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 BER93_RS18955 IPR023753 FAD/NAD(P)-binding domain BER93_RS18955 IPR036188 FAD/NAD(P)-binding domain superfamily BER93_RS18960 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily BER93_RS18960 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_RS18960 IPR002489 Glutamate synthase, alpha subunit, C-terminal BER93_RS18960 IPR017932 Glutamine amidotransferase type 2 domain BER93_RS18960 IPR013785 Aldolase-type TIM barrel BER93_RS18960 IPR006982 Glutamate synthase, central-N BER93_RS18960 IPR002932 Glutamate synthase domain BER93_RS18975 IPR008909 DALR anticodon binding BER93_RS18975 IPR015944 Glycine-tRNA ligase, beta subunit BER93_RS18975 IPR006194 Glycine-tRNA synthetase, heterodimeric BER93_RS18980 IPR006194 Glycine-tRNA synthetase, heterodimeric BER93_RS18980 IPR002310 Glycine-tRNA ligase, alpha subunit BER93_RS18985 IPR042181 Type II secretion system, protein E, N-terminal BER93_RS18985 IPR007831 General secretory system II, protein E, N-terminal BER93_RS18985 IPR037257 General secretory system II, protein E, N-terminal superfamily BER93_RS18985 IPR001482 Type II/IV secretion system protein BER93_RS18985 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS18985 IPR013374 ATPase, type IV, pilus assembly, PilB BER93_RS18985 IPR003593 AAA+ ATPase domain BER93_RS18990 IPR029062 Class I glutamine amidotransferase-like BER93_RS18990 IPR022955 GMP synthase BER93_RS18990 IPR017926 Glutamine amidotransferase BER93_RS18990 IPR001674 GMP synthase, C-terminal BER93_RS18990 IPR004739 GMP synthase, glutamine amidotransferase BER93_RS18990 IPR025777 GMP synthetase ATP pyrophosphatase domain BER93_RS18990 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS19000 IPR019820 Sec-independent periplasmic protein translocase, conserved site BER93_RS19000 IPR002033 Sec-independent periplasmic protein translocase TatC BER93_RS19005 IPR003369 Sec-independent protein translocase protein TatA/B/E BER93_RS19005 IPR018448 Twin-arginine translocation protein TatB BER93_RS19010 IPR006312 Sec-independent protein translocase protein TatA/E BER93_RS19010 IPR003369 Sec-independent protein translocase protein TatA/B/E BER93_RS19020 IPR033659 Ferrochelatase, N-terminal BER93_RS19020 IPR001015 Ferrochelatase BER93_RS19020 IPR019772 Ferrochelatase, active site BER93_RS19020 IPR033644 Ferrochelatase, C-terminal BER93_RS19025 IPR029058 Alpha/Beta hydrolase fold BER93_RS19025 IPR000073 Alpha/beta hydrolase fold-1 BER93_RS19025 IPR000639 Epoxide hydrolase-like BER93_RS19035 IPR007476 Putative exonuclease, RdgC BER93_RS19040 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_RS19040 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal BER93_RS19040 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase BER93_RS19040 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type BER93_RS19045 IPR036237 Xylose isomerase-like superfamily BER93_RS19045 IPR013452 Xylose isomerase, bacterial-type BER93_RS19045 IPR001998 Xylose isomerase BER93_RS19050 IPR028082 Periplasmic binding protein-like I BER93_RS19050 IPR006377 Catabolite control protein A BER93_RS19050 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS19050 IPR000843 LacI-type HTH domain BER93_RS19055 IPR005154 Alpha glucuronidase, N-terminal BER93_RS19055 IPR011395 Alpha glucuronidase BER93_RS19055 IPR011099 Glycosyl hydrolase family 67, C-terminal BER93_RS19055 IPR037054 Alpha-glucuronidase, C-terminal domain superfamily BER93_RS19055 IPR011100 Glycosyl hydrolase family 67, catalytic domain BER93_RS19055 IPR017853 Glycoside hydrolase superfamily BER93_RS19055 IPR029018 Beta-hexosaminidase-like, domain 2 BER93_RS19080 IPR001584 Integrase, catalytic core BER93_RS19080 IPR012337 Ribonuclease H-like superfamily BER93_RS19080 IPR036397 Ribonuclease H superfamily BER93_RS19080 IPR025948 HTH-like domain BER93_RS19085 IPR002514 Transposase IS3/IS911family BER93_RS19085 IPR009057 Homeobox-like domain superfamily BER93_RS19110 IPR016084 Haem oxygenase-like, multi-helical BER93_RS19110 IPR016053 Haem oxygenase-like BER93_RS19125 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase BER93_RS19125 IPR025532 Glucose-6-phosphate 1-epimerase BER93_RS19125 IPR011013 Galactose mutarotase-like domain superfamily BER93_RS19125 IPR014718 Glycoside hydrolase-type carbohydrate-binding BER93_RS19135 IPR023006 Uncharacterised protein family UPF0225 BER93_RS19135 IPR032710 NTF2-like domain superfamily BER93_RS19135 IPR004027 SEC-C motif BER93_RS19140 IPR002781 Transmembrane protein TauE-like BER93_RS19180 IPR001474 GTP cyclohydrolase I BER93_RS19180 IPR018234 GTP cyclohydrolase I, conserved site BER93_RS19180 IPR020602 GTP cyclohydrolase I domain BER93_RS19185 IPR005828 Major facilitator, sugar transporter-like BER93_RS19185 IPR036259 MFS transporter superfamily BER93_RS19185 IPR020846 Major facilitator superfamily domain BER93_RS19185 IPR005829 Sugar transporter, conserved site BER93_RS19185 IPR004736 MFS transporter, metabolite:H symporter BER93_RS19210 IPR036397 Ribonuclease H superfamily BER93_RS19210 IPR012337 Ribonuclease H-like superfamily BER93_RS19210 IPR001584 Integrase, catalytic core BER93_RS19210 IPR025948 HTH-like domain BER93_RS19215 IPR002559 Transposase, IS4-like BER93_RS19215 IPR008490 Transposase InsH, N-terminal BER93_RS19220 IPR008490 Transposase InsH, N-terminal BER93_RS19230 IPR013430 Toxin-antitoxin system, antidote protein, HigA BER93_RS19230 IPR010982 Lambda repressor-like, DNA-binding domain superfamily BER93_RS19230 IPR001387 Cro/C1-type helix-turn-helix domain BER93_RS19235 IPR007711 Toxin HigB-1 BER93_RS19235 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BER93_RS19240 IPR027785 UvrD-like helicase C-terminal domain BER93_RS19240 IPR006344 RecBCD enzyme subunit RecD BER93_RS19240 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS19245 IPR034739 UvrD/AddA helicase, N-terminal BER93_RS19245 IPR014016 UvrD-like helicase, ATP-binding domain BER93_RS19245 IPR011335 Restriction endonuclease type II-like BER93_RS19245 IPR004586 RecBCD enzyme subunit RecB BER93_RS19245 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type BER93_RS19245 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS19245 IPR011604 Exonuclease, phage-type/RecB, C-terminal BER93_RS19245 IPR014017 UvrD-like DNA helicase, C-terminal BER93_RS19245 IPR000212 DNA helicase, UvrD/REP type BER93_RS19250 IPR013986 DExx box DNA helicase domain superfamily BER93_RS19250 IPR006697 RecBCD enzyme subunit RecC BER93_RS19250 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS19250 IPR041500 RecC, C-terminal BER93_RS19250 IPR011335 Restriction endonuclease type II-like BER93_RS19255 IPR017871 ABC transporter, conserved site BER93_RS19255 IPR003439 ABC transporter-like BER93_RS19255 IPR003593 AAA+ ATPase domain BER93_RS19255 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS19255 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl BER93_RS19260 IPR003453 ABC transport permease subunit MlaE, Proteobacteria BER93_RS19260 IPR030802 ABC transporter permease MalE BER93_RS19265 IPR003399 Mce/MlaD BER93_RS19265 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD BER93_RS19270 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC BER93_RS19270 IPR042245 Tgt2/MlaC superfamily BER93_RS19280 IPR007428 MlaA lipoprotein BER93_RS19290 IPR029760 Glutathione peroxidase conserved site BER93_RS19290 IPR033674 Thioredoxin/glutathione peroxidase BtuE BER93_RS19290 IPR000889 Glutathione peroxidase BER93_RS19290 IPR029759 Glutathione peroxidase active site BER93_RS19290 IPR036249 Thioredoxin-like superfamily BER93_RS19300 IPR003798 DNA recombination RmuC BER93_RS19310 IPR004758 Amino acid transporter BER93_RS19310 IPR002293 Amino acid/polyamine transporter I BER93_RS19320 IPR029787 Nucleotide cyclase BER93_RS19320 IPR000160 GGDEF domain BER93_RS19320 IPR029016 GAF-like domain superfamily BER93_RS19325 IPR036129 Glycerate kinase superfamily BER93_RS19325 IPR018197 Glycerate kinase, restriction-enzyme-like fold BER93_RS19325 IPR004381 Glycerate kinase BER93_RS19325 IPR018193 Glycerate kinase, flavodoxin-like fold BER93_RS19330 IPR011701 Major facilitator superfamily BER93_RS19330 IPR036259 MFS transporter superfamily BER93_RS19330 IPR020846 Major facilitator superfamily domain BER93_RS19340 IPR015947 PUA-like superfamily BER93_RS19340 IPR002478 PUA domain BER93_RS19340 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS19340 IPR019614 S-adenosylmethionine-dependent methyltransferase BER93_RS19340 IPR036974 PUA domain superfamily BER93_RS19340 IPR041532 RlmI, PUA-like domain BER93_RS19340 IPR023542 rRNA large subunit methyltransferase I BER93_RS19345 IPR005496 Integral membrane protein TerC BER93_RS19345 IPR022369 Integral membrane protein TerC, riboswitch-linked BER93_RS19350 IPR030395 Glycerophosphodiester phosphodiesterase domain BER93_RS19350 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily BER93_RS19355 IPR002514 Transposase IS3/IS911family BER93_RS19355 IPR009057 Homeobox-like domain superfamily BER93_RS19365 IPR025867 MnmE, helical domain BER93_RS19365 IPR027368 tRNA modification GTPase MnmE domain 2 BER93_RS19365 IPR004520 tRNA modification GTPase MnmE BER93_RS19365 IPR006073 GTP binding domain BER93_RS19365 IPR018948 GTP-binding protein TrmE, N-terminal BER93_RS19365 IPR031168 TrmE-type guanine nucleotide-binding domain BER93_RS19365 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS19365 IPR005225 Small GTP-binding protein domain BER93_RS19365 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 BER93_RS19370 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 BER93_RS19370 IPR038210 Membrane insertase YidC, periplasmic domain BER93_RS19370 IPR038221 YidC, periplasmic domain superfamily BER93_RS19370 IPR019998 Membrane insertase YidC BER93_RS19370 IPR028055 Membrane insertase YidC/Oxa1, C-terminal BER93_RS19370 IPR028053 Membrane insertase YidC, N-terminal BER93_RS19375 IPR000100 Ribonuclease P BER93_RS19375 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS19375 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS19375 IPR020539 Ribonuclease P, conserved site BER93_RS19380 IPR000271 Ribosomal protein L34 BER93_RS19380 IPR020939 Ribosomal protein L34, conserved site BER93_RS19430 IPR041423 DNA gyrase subunit B insert domain BER93_RS19430 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_RS19430 IPR002288 DNA gyrase B subunit, C-terminal BER93_RS19430 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BER93_RS19430 IPR011557 DNA gyrase, subunit B BER93_RS19430 IPR003594 Histidine kinase/HSP90-like ATPase BER93_RS19430 IPR001241 DNA topoisomerase, type IIA BER93_RS19430 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_RS19430 IPR013760 DNA topoisomerase, type IIA-like domain superfamily BER93_RS19430 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal BER93_RS19430 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 BER93_RS19430 IPR018522 DNA topoisomerase, type IIA, conserved site BER93_RS19430 IPR006171 TOPRIM domain BER93_RS19430 IPR034160 DNA gyrase subunit B, TOPRIM domain BER93_RS19560 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS19560 IPR038454 DnaA, N-terminal domain superfamily BER93_RS19560 IPR024633 DnaA N-terminal domain BER93_RS19560 IPR013159 Chromosomal replication initiator, DnaA C-terminal BER93_RS19560 IPR013317 Chromosomal replication initiator protein DnaA BER93_RS19560 IPR018312 Chromosomal replication control, initiator DnaA, conserved site BER93_RS19560 IPR020591 Chromosomal replication control, initiator DnaA-like BER93_RS19560 IPR001957 Chromosomal replication control, initiator DnaA BER93_RS19560 IPR003593 AAA+ ATPase domain BER93_RS19560 IPR010921 Trp repressor/replication initiator BER93_RS19595 IPR001238 DNA-binding, RecF BER93_RS19595 IPR042174 DNA-binding RecF, domain 2 BER93_RS19595 IPR003395 RecF/RecN/SMC, N-terminal BER93_RS19595 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_RS19595 IPR018078 DNA-binding, RecF, conserved site BER93_RS19655 IPR003400 Biopolymer transport protein ExbD/TolR