BER93_RS00005 PF00308 Bacterial dnaA protein BER93_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix BER93_RS00005 PF11638 DnaA N-terminal domain BER93_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BER93_RS00010 PF02767 DNA polymerase III beta subunit, central domain BER93_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BER93_RS00020 PF02463 RecF/RecN/SMC N terminal domain BER93_RS00025 PF00204 DNA gyrase B BER93_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus BER93_RS00025 PF01751 Toprim domain BER93_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS00030 PF02517 CAAX protease self-immunity BER93_RS00035 PF01435 Peptidase family M48 BER93_RS00040 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) BER93_RS00040 PF13181 Tetratricopeptide repeat BER93_RS00040 PF13432 Tetratricopeptide repeat BER93_RS00045 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_RS00050 PF01618 BER93_RS00050 BER93_RS00055 PF02472 Biopolymer transport protein ExbD/TolR BER93_RS00060 PF02472 Biopolymer transport protein ExbD/TolR BER93_RS00065 PF02077 BER93_RS00065 BER93_RS00075 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BER93_RS00085 PF13091 PLD-like domain BER93_RS00100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BER93_RS00105 PF01694 Rhomboid family BER93_RS00110 PF08850 BER93_RS00110 BER93_RS00115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_RS00115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BER93_RS00120 PF03572 Peptidase family S41 BER93_RS00120 PF13180 PDZ domain BER93_RS00125 PF01551 Peptidase family M23 BER93_RS00130 PF04389 Peptidase family M28 BER93_RS00135 PF13670 BER93_RS00135 BER93_RS00145 PF01565 FAD binding domain BER93_RS00145 PF02913 FAD linked oxidases, C-terminal domain BER93_RS00165 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS00175 PF01343 Peptidase family S49 BER93_RS00180 PF01554 MatE BER93_RS00190 PF11304 BER93_RS00190 BER93_RS00200 PF00270 DEAD/DEAH box helicase BER93_RS00200 PF00271 Helicase conserved C-terminal domain BER93_RS00215 PF00140 Sigma-70 factor, region 1 BER93_RS00215 PF04542 Sigma-70 region 2 BER93_RS00215 PF04545 Sigma-70, region 4 BER93_RS00220 PF03167 Uracil DNA glycosylase superfamily BER93_RS00225 PF00072 Response regulator receiver domain BER93_RS00230 PF02687 BER93_RS00230 BER93_RS00235 PF00005 ABC transporter BER93_RS00240 PF00270 DEAD/DEAH box helicase BER93_RS00240 PF00271 Helicase conserved C-terminal domain BER93_RS00240 PF12300 BER93_RS00240 BER93_RS00245 PF00085 Thioredoxin BER93_RS00250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_RS00250 PF07497 Rho termination factor, RNA-binding domain BER93_RS00250 PF07498 Rho termination factor, N-terminal domain BER93_RS00255 PF01609 Transposase DDE domain BER93_RS00255 PF13006 BER93_RS00255 BER93_RS00260 PF03971 Monomeric isocitrate dehydrogenase BER93_RS00280 PF01476 LysM domain BER93_RS00285 PF14489 QueF-like protein BER93_RS00285 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BER93_RS00295 PF16576 BER93_RS00295 BER93_RS00300 PF00873 AcrB/AcrD/AcrF family BER93_RS00305 PF00873 AcrB/AcrD/AcrF family BER93_RS00320 PF07063 Domain of unknown function (DUF1338) BER93_RS00335 PF04349 Periplasmic glucan biosynthesis protein, MdoG BER93_RS00340 PF00265 Thymidine kinase BER93_RS00345 PF00580 UvrD/REP helicase N-terminal domain BER93_RS00345 PF13361 UvrD-like helicase C-terminal domain BER93_RS00375 PF04337 Protein of unknown function, DUF480 BER93_RS00380 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BER93_RS00400 PF01553 Acyltransferase BER93_RS00405 PF00107 Zinc-binding dehydrogenase BER93_RS00405 PF08240 Alcohol dehydrogenase GroES-like domain BER93_RS00410 PF04325 Protein of unknown function (DUF465) BER93_RS00420 PF01609 Transposase DDE domain BER93_RS00420 PF13340 BER93_RS00420 BER93_RS00455 PF13276 BER93_RS00455 BER93_RS00460 PF01527 Transposase BER93_RS00465 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS00470 PF13454 FAD-NAD(P)-binding BER93_RS00475 PF01609 Transposase DDE domain BER93_RS00475 PF13340 BER93_RS00475 BER93_RS00480 PF13340 BER93_RS00480 BER93_RS00485 PF06903 BER93_RS00485 BER93_RS00490 PF01609 Transposase DDE domain BER93_RS00495 PF05598 BER93_RS00495 BER93_RS00510 PF00270 DEAD/DEAH box helicase BER93_RS00510 PF00271 Helicase conserved C-terminal domain BER93_RS00515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BER93_RS00515 PF00364 Biotin-requiring enzyme BER93_RS00515 PF02817 e3 binding domain BER93_RS00520 PF07653 Variant SH3 domain BER93_RS00525 PF02779 Transketolase, pyrimidine binding domain BER93_RS00525 PF02780 Transketolase, C-terminal domain BER93_RS00530 PF00676 Dehydrogenase E1 component BER93_RS00535 PF03301 Tryptophan 2,3-dioxygenase BER93_RS00540 PF00854 POT family BER93_RS00545 PF13899 Thioredoxin-like BER93_RS00555 PF12802 MarR family BER93_RS00560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BER93_RS00560 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal BER93_RS00565 PF04209 homogentisate 1,2-dioxygenase BER93_RS00590 PF02558 Ketopantoate reductase PanE/ApbA BER93_RS00590 PF08546 Ketopantoate reductase PanE/ApbA C terminal BER93_RS00600 PF01061 BER93_RS00600 BER93_RS00605 PF00005 ABC transporter BER93_RS00610 PF00175 Oxidoreductase NAD-binding domain BER93_RS00610 PF00970 Oxidoreductase FAD-binding domain BER93_RS00620 PF00561 alpha/beta hydrolase fold BER93_RS00620 PF08386 TAP-like protein BER93_RS00625 PF00005 ABC transporter BER93_RS00630 PF12679 BER93_RS00630 BER93_RS00635 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_RS00645 PF07715 TonB-dependent Receptor Plug Domain BER93_RS00650 PF00043 Glutathione S-transferase, C-terminal domain BER93_RS00650 PF02798 Glutathione S-transferase, N-terminal domain BER93_RS00655 PF13333 BER93_RS00655 BER93_RS00705 PF13503 BER93_RS00705 BER93_RS00710 PF05954 Phage late control gene D protein (GPD) BER93_RS00710 PF10106 BER93_RS00710 BER93_RS00710 PF13296 BER93_RS00710 BER93_RS00720 PF13503 BER93_RS00720 BER93_RS00725 PF05954 Phage late control gene D protein (GPD) BER93_RS00725 PF10106 BER93_RS00725 BER93_RS00725 PF13296 BER93_RS00725 BER93_RS00730 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) BER93_RS00735 PF13503 BER93_RS00735 BER93_RS00740 PF05954 Phage late control gene D protein (GPD) BER93_RS00740 PF10106 BER93_RS00740 BER93_RS00740 PF13296 BER93_RS00740 BER93_RS00745 PF13614 AAA domain BER93_RS00750 PF01555 DNA methylase BER93_RS00760 PF04860 Phage portal protein BER93_RS00765 PF03237 Terminase-like family BER93_RS00765 PF06056 Putative ATPase subunit of terminase (gpP-like) BER93_RS00770 PF05929 BER93_RS00770 BER93_RS00775 PF05125 BER93_RS00775 BER93_RS00780 PF05944 BER93_RS00780 BER93_RS00785 PF05926 BER93_RS00785 BER93_RS00790 PF05489 Phage Tail Protein X BER93_RS00795 PF16931 BER93_RS00795 BER93_RS00800 PF05449 BER93_RS00800 BER93_RS00815 PF06891 BER93_RS00815 BER93_RS00820 PF05069 BER93_RS00820 BER93_RS00825 PF04865 BER93_RS00825 BER93_RS00830 PF09684 BER93_RS00830 BER93_RS00845 PF04717 Phage-related baseplate assembly protein BER93_RS00850 PF04965 Gene 25-like lysozyme BER93_RS00855 PF04984 Phage tail sheath protein BER93_RS00860 PF04985 BER93_RS00860 BER93_RS00865 PF10109 BER93_RS00865 BER93_RS00870 PF10145 BER93_RS00870 BER93_RS00875 PF06995 BER93_RS00875 BER93_RS00890 PF01609 Transposase DDE domain BER93_RS00890 PF05598 BER93_RS00890 BER93_RS00895 PF01609 Transposase DDE domain BER93_RS00895 PF05598 BER93_RS00895 BER93_RS00915 PF00140 Sigma-70 factor, region 1 BER93_RS00915 PF03979 Sigma-70 factor, region 1 BER93_RS00915 PF04539 Sigma-70 region 3 BER93_RS00915 PF04542 Sigma-70 region 2 BER93_RS00915 PF04545 Sigma-70, region 4 BER93_RS00915 PF04546 Sigma-70, non-essential region BER93_RS00920 PF02580 D-Tyr-tRNA(Tyr) deacylase BER93_RS00925 PF03279 BER93_RS00925 BER93_RS00930 PF13420 Acetyltransferase (GNAT) domain BER93_RS00935 PF00925 GTP cyclohydrolase II BER93_RS00940 PF03703 BER93_RS00940 BER93_RS00945 PF03703 BER93_RS00945 BER93_RS00950 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BER93_RS00955 PF00535 Glycosyl transferase family 2 BER93_RS00960 PF04932 BER93_RS00960 BER93_RS00965 PF13231 BER93_RS00965 BER93_RS00970 PF01029 NusB family BER93_RS00970 PF01189 NOL1/NOP2/sun family BER93_RS00975 PF00551 Formyl transferase BER93_RS00975 PF02911 Formyl transferase, C-terminal domain BER93_RS00980 PF01327 Polypeptide deformylase BER93_RS00985 PF01476 LysM domain BER93_RS00990 PF02481 DNA recombination-mediator protein A BER93_RS00995 PF04361 BER93_RS00995 BER93_RS01000 PF01609 Transposase DDE domain BER93_RS01005 PF01609 Transposase DDE domain BER93_RS01005 PF13340 BER93_RS01005 BER93_RS01010 PF01131 DNA topoisomerase BER93_RS01010 PF01751 Toprim domain BER93_RS01010 PF13368 BER93_RS01010 BER93_RS01015 PF01300 Telomere recombination BER93_RS01040 PF00593 TonB dependent receptor BER93_RS01040 PF07715 TonB-dependent Receptor Plug Domain BER93_RS01045 PF01103 Surface antigen BER93_RS01045 PF07244 Surface antigen variable number repeat BER93_RS01050 PF04357 BER93_RS01050 BER93_RS01065 PF13360 PQQ-like domain BER93_RS01070 PF13671 AAA domain BER93_RS01075 PF13347 MFS/sugar transport protein BER93_RS01085 PF00072 Response regulator receiver domain BER93_RS01085 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS01085 PF12860 BER93_RS01085 BER93_RS01090 PF02659 BER93_RS01090 BER93_RS01095 PF01614 Bacterial transcriptional regulator BER93_RS01095 PF09339 IclR helix-turn-helix domain BER93_RS01100 PF07690 Major Facilitator Superfamily BER93_RS01105 PF05336 Domain of unknown function (DUF718) BER93_RS01110 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BER93_RS01110 PF13378 Enolase C-terminal domain-like BER93_RS01115 PF01557 Fumarylacetoacetate (FAA) hydrolase family BER93_RS01120 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS01125 PF04909 Amidohydrolase BER93_RS01130 PF00248 Aldo/keto reductase family BER93_RS01135 PF00072 Response regulator receiver domain BER93_RS01135 PF00196 Bacterial regulatory proteins, luxR family BER93_RS01140 PF00501 AMP-binding enzyme BER93_RS01140 PF13193 AMP-binding enzyme C-terminal domain BER93_RS01140 PF16177 BER93_RS01140 BER93_RS01150 PF04341 BER93_RS01150 BER93_RS01155 PF00474 Sodium:solute symporter family BER93_RS01160 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_RS01165 PF04828 Glutathione-dependent formaldehyde-activating enzyme BER93_RS01170 PF04226 BER93_RS01170 BER93_RS01175 PF01648 4'-phosphopantetheinyl transferase superfamily BER93_RS01185 PF02527 rRNA small subunit methyltransferase G BER93_RS01190 PF00873 AcrB/AcrD/AcrF family BER93_RS01200 PF00830 Ribosomal L28 family BER93_RS01205 PF00471 Ribosomal protein L33 BER93_RS01210 PF13091 PLD-like domain BER93_RS01210 PF13396 BER93_RS01210 BER93_RS01215 PF13454 FAD-NAD(P)-binding BER93_RS01220 PF00580 UvrD/REP helicase N-terminal domain BER93_RS01220 PF13361 UvrD-like helicase C-terminal domain BER93_RS01230 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) BER93_RS01235 PF01609 Transposase DDE domain BER93_RS01235 PF05598 BER93_RS01235 BER93_RS01250 PF02237 Biotin protein ligase C terminal domain BER93_RS01250 PF03099 Biotin/lipoate A/B protein ligase family BER93_RS01250 PF08279 HTH domain BER93_RS01255 PF03309 Type III pantothenate kinase BER93_RS01260 PF05036 Sporulation related domain BER93_RS01275 PF00665 Integrase core domain BER93_RS01275 PF13276 BER93_RS01275 BER93_RS01280 PF01527 Transposase BER93_RS01285 PF01609 Transposase DDE domain BER93_RS01285 PF05598 BER93_RS01285 BER93_RS01300 PF05598 BER93_RS01300 BER93_RS01310 PF12697 Alpha/beta hydrolase family BER93_RS01325 PF00579 tRNA synthetases class I (W and Y) BER93_RS01330 PF08085 BER93_RS01330 BER93_RS01335 PF08085 BER93_RS01335 BER93_RS01340 PF00491 Arginase family BER93_RS01350 PF01609 Transposase DDE domain BER93_RS01360 PF01609 Transposase DDE domain BER93_RS01360 PF05598 BER93_RS01360 BER93_RS01365 PF02223 Thymidylate kinase BER93_RS01370 PF01609 Transposase DDE domain BER93_RS01370 PF05598 BER93_RS01370 BER93_RS01375 PF01292 Prokaryotic cytochrome b561 BER93_RS01380 PF00199 Catalase BER93_RS01385 PF00883 Cytosol aminopeptidase family, catalytic domain BER93_RS01390 PF00702 haloacid dehalogenase-like hydrolase BER93_RS01395 PF01594 BER93_RS01395 BER93_RS01415 PF13180 PDZ domain BER93_RS01415 PF13365 Trypsin-like peptidase domain BER93_RS01425 PF11769 BER93_RS01425 BER93_RS01435 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS01435 PF00672 HAMP domain BER93_RS01435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS01440 PF00072 Response regulator receiver domain BER93_RS01440 PF00486 Transcriptional regulatory protein, C terminal BER93_RS01450 PF01609 Transposase DDE domain BER93_RS01455 PF01609 Transposase DDE domain BER93_RS01455 PF13340 BER93_RS01455 BER93_RS01460 PF13586 BER93_RS01460 BER93_RS01465 PF13586 BER93_RS01465 BER93_RS01470 PF01609 Transposase DDE domain BER93_RS01475 PF01370 NAD dependent epimerase/dehydratase family BER93_RS01475 PF08338 Domain of unknown function (DUF1731) BER93_RS01480 PF13628 BER93_RS01480 BER93_RS01495 PF01609 Transposase DDE domain BER93_RS01495 PF13340 BER93_RS01495 BER93_RS01515 PF01609 Transposase DDE domain BER93_RS01530 PF01139 tRNA-splicing ligase RtcB BER93_RS01535 PF00440 Bacterial regulatory proteins, tetR family BER93_RS01540 PF00111 2Fe-2S iron-sulfur cluster binding domain BER93_RS01540 PF00175 Oxidoreductase NAD-binding domain BER93_RS01540 PF00970 Oxidoreductase FAD-binding domain BER93_RS01545 PF00487 BER93_RS01545 BER93_RS01550 PF00563 EAL domain BER93_RS01550 PF12792 BER93_RS01550 BER93_RS01555 PF08212 Lipocalin-like domain BER93_RS01565 PF01078 Magnesium chelatase, subunit ChlI BER93_RS01565 PF13335 BER93_RS01565 BER93_RS01565 PF13541 Subunit ChlI of Mg-chelatase BER93_RS01570 PF04380 BER93_RS01570 BER93_RS01575 PF00543 Nitrogen regulatory protein P-II BER93_RS01580 PF02838 Glycosyl hydrolase family 20, domain 2 BER93_RS01580 PF07555 beta-N-acetylglucosaminidase BER93_RS01590 PF14470 Bacterial PH domain BER93_RS01600 PF01564 Spermine/spermidine synthase BER93_RS01605 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BER93_RS01605 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BER93_RS01610 PF01609 Transposase DDE domain BER93_RS01610 PF05598 BER93_RS01610 BER93_RS01625 PF11191 Protein of unknown function (DUF2782) BER93_RS01630 PF00476 DNA polymerase family A BER93_RS01630 PF01367 5'-3' exonuclease, C-terminal SAM fold BER93_RS01630 PF01612 3'-5' exonuclease BER93_RS01630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BER93_RS01635 PF01218 Coproporphyrinogen III oxidase BER93_RS01655 PF00326 Prolyl oligopeptidase family BER93_RS01655 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BER93_RS01660 PF00501 AMP-binding enzyme BER93_RS01670 PF04820 Tryptophan halogenase BER93_RS01675 PF00550 Phosphopantetheine attachment site BER93_RS01685 PF01553 Acyltransferase BER93_RS01690 PF07977 FabA-like domain BER93_RS01695 PF03279 BER93_RS01695 BER93_RS01705 PF03176 MMPL family BER93_RS01720 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS01725 PF04820 Tryptophan halogenase BER93_RS01730 PF00535 Glycosyl transferase family 2 BER93_RS01735 PF13723 BER93_RS01735 BER93_RS01740 PF00109 Beta-ketoacyl synthase, N-terminal domain BER93_RS01740 PF02801 Beta-ketoacyl synthase, C-terminal domain BER93_RS01745 PF05166 YcgL domain BER93_RS01750 PF00023 Ankyrin repeat BER93_RS01750 PF12796 Ankyrin repeats (3 copies) BER93_RS01760 PF00723 Glycosyl hydrolases family 15 BER93_RS01765 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BER93_RS01765 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BER93_RS01770 PF02254 TrkA-N domain BER93_RS01775 PF00194 Eukaryotic-type carbonic anhydrase BER93_RS01780 PF00571 CBS domain BER93_RS01780 PF01769 Divalent cation transporter BER93_RS01780 PF03448 MgtE intracellular N domain BER93_RS01785 PF13302 Acetyltransferase (GNAT) domain BER93_RS01785 PF13380 CoA binding domain BER93_RS01785 PF13549 ATP-grasp domain BER93_RS01785 PF13607 Succinyl-CoA ligase like flavodoxin domain BER93_RS01790 PF04332 BER93_RS01790 BER93_RS01795 PF00317 Ribonucleotide reductase, all-alpha domain BER93_RS01795 PF02867 Ribonucleotide reductase, barrel domain BER93_RS01800 PF00268 Ribonucleotide reductase, small chain BER93_RS01805 PF00258 Flavodoxin BER93_RS01810 PF00085 Thioredoxin BER93_RS01820 PF03006 BER93_RS01820 BER93_RS01825 PF00270 DEAD/DEAH box helicase BER93_RS01825 PF00271 Helicase conserved C-terminal domain BER93_RS01825 PF09369 BER93_RS01825 BER93_RS01830 PF13482 RNase_H superfamily BER93_RS01835 PF03009 Glycerophosphoryl diester phosphodiesterase family BER93_RS01840 PF00593 TonB dependent receptor BER93_RS01840 PF07715 TonB-dependent Receptor Plug Domain BER93_RS01845 PF08975 Domain of unknown function (DUF1868) BER93_RS01860 PF00873 AcrB/AcrD/AcrF family BER93_RS01865 PF00873 AcrB/AcrD/AcrF family BER93_RS01875 PF00873 AcrB/AcrD/AcrF family BER93_RS01880 PF13437 HlyD family secretion protein BER93_RS01885 PF13649 Methyltransferase domain BER93_RS01895 PF14305 BER93_RS01895 BER93_RS01900 PF08845 BER93_RS01900 BER93_RS01925 PF00665 Integrase core domain BER93_RS01935 PF01527 Transposase BER93_RS01940 PF07055 Enoyl reductase FAD binding domain BER93_RS01940 PF12241 Trans-2-enoyl-CoA reductase catalytic region BER93_RS01940 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BER93_RS01945 PF09912 BER93_RS01945 BER93_RS01950 PF03055 Retinal pigment epithelial membrane protein BER93_RS01960 PF01070 FMN-dependent dehydrogenase BER93_RS01975 PF00155 Aminotransferase class I and II BER93_RS01980 PF00316 Fructose-1-6-bisphosphatase BER93_RS01985 PF13229 Right handed beta helix region BER93_RS01985 PF16380 BER93_RS01985 BER93_RS01990 PF06080 BER93_RS01990 BER93_RS01995 PF12787 BER93_RS01995 BER93_RS02005 PF10116 BER93_RS02005 BER93_RS02010 PF00293 NUDIX domain BER93_RS02015 PF13460 NADH(P)-binding BER93_RS02020 PF01447 Thermolysin metallopeptidase, catalytic domain BER93_RS02020 PF02868 Thermolysin metallopeptidase, alpha-helical domain BER93_RS02035 PF01609 Transposase DDE domain BER93_RS02040 PF13340 BER93_RS02040 BER93_RS02050 PF00108 Thiolase, N-terminal domain BER93_RS02050 PF02803 Thiolase, C-terminal domain BER93_RS02055 PF07219 BER93_RS02055 BER93_RS02060 PF04375 BER93_RS02060 BER93_RS02065 PF02602 Uroporphyrinogen-III synthase HemD BER93_RS02070 PF09500 Putative thioesterase (yiiD_Cterm) BER93_RS02080 PF00581 Rhodanese-like domain BER93_RS02085 PF02556 Preprotein translocase subunit SecB BER93_RS02090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BER93_RS02090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BER93_RS02100 PF00205 Thiamine pyrophosphate enzyme, central domain BER93_RS02100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BER93_RS02100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BER93_RS02110 PF00588 SpoU rRNA Methylase family BER93_RS02115 PF13698 BER93_RS02115 BER93_RS02120 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BER93_RS02120 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER93_RS02130 PF01527 Transposase BER93_RS02135 PF00665 Integrase core domain BER93_RS02135 PF13276 BER93_RS02135 BER93_RS02150 PF00588 SpoU rRNA Methylase family BER93_RS02150 PF08032 RNA 2'-O ribose methyltransferase substrate binding BER93_RS02160 PF01474 Class-II DAHP synthetase family BER93_RS02165 PF00924 Mechanosensitive ion channel BER93_RS02175 PF09900 BER93_RS02175 BER93_RS02180 PF00009 Elongation factor Tu GTP binding domain BER93_RS02180 PF00679 Elongation factor G C-terminus BER93_RS02180 PF03144 Elongation factor Tu domain 2 BER93_RS02185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BER93_RS02190 PF00056 lactate/malate dehydrogenase, NAD binding domain BER93_RS02190 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BER93_RS02210 PF07486 Cell Wall Hydrolase BER93_RS02215 PF01609 Transposase DDE domain BER93_RS02215 PF05598 BER93_RS02215 BER93_RS02225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BER93_RS02225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_RS02230 PF08240 Alcohol dehydrogenase GroES-like domain BER93_RS02230 PF13602 Zinc-binding dehydrogenase BER93_RS02235 PF00691 OmpA family BER93_RS02235 PF13505 Outer membrane protein beta-barrel domain BER93_RS02245 PF00849 RNA pseudouridylate synthase BER93_RS02245 PF01479 S4 domain BER93_RS02255 PF00155 Aminotransferase class I and II BER93_RS02260 PF13531 Bacterial extracellular solute-binding protein BER93_RS02265 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS02270 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS02275 PF00005 ABC transporter BER93_RS02275 PF12857 BER93_RS02275 BER93_RS02280 PF09694 BER93_RS02280 BER93_RS02285 PF00107 Zinc-binding dehydrogenase BER93_RS02285 PF08240 Alcohol dehydrogenase GroES-like domain BER93_RS02290 PF00593 TonB dependent receptor BER93_RS02290 PF07715 TonB-dependent Receptor Plug Domain BER93_RS02295 PF04185 Phosphoesterase family BER93_RS02295 PF05506 BER93_RS02295 BER93_RS02300 PF00300 Histidine phosphatase superfamily (branch 1) BER93_RS02305 PF01609 Transposase DDE domain BER93_RS02305 PF13340 BER93_RS02305 BER93_RS02315 PF00816 H-NS histone family BER93_RS02320 PF00128 Alpha amylase, catalytic domain BER93_RS02320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_RS02335 PF08443 RimK-like ATP-grasp domain BER93_RS02345 PF00072 Response regulator receiver domain BER93_RS02345 PF00486 Transcriptional regulatory protein, C terminal BER93_RS02350 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS02350 PF00672 HAMP domain BER93_RS02350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS02370 PF00677 Lumazine binding domain BER93_RS02375 PF00925 GTP cyclohydrolase II BER93_RS02375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BER93_RS02380 PF00885 6,7-dimethyl-8-ribityllumazine synthase BER93_RS02385 PF01029 NusB family BER93_RS02390 PF00586 AIR synthase related protein, N-terminal domain BER93_RS02390 PF02769 AIR synthase related protein, C-terminal domain BER93_RS02400 PF03814 BER93_RS02400 BER93_RS02410 PF13692 Glycosyl transferases group 1 BER93_RS02425 PF04107 Glutamate-cysteine ligase family 2(GCS2) BER93_RS02430 PF01926 50S ribosome-binding GTPase BER93_RS02435 PF00034 Cytochrome c BER93_RS02440 PF13462 Thioredoxin BER93_RS02445 PF01323 DSBA-like thioredoxin domain BER93_RS02450 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_RS02455 PF00107 Zinc-binding dehydrogenase BER93_RS02455 PF08240 Alcohol dehydrogenase GroES-like domain BER93_RS02465 PF01609 Transposase DDE domain BER93_RS02475 PF05598 BER93_RS02475 BER93_RS02480 PF00106 short chain dehydrogenase BER93_RS02480 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS02490 PF00326 Prolyl oligopeptidase family BER93_RS02490 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BER93_RS02495 PF07759 BER93_RS02495 BER93_RS02500 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BER93_RS02515 PF00324 Amino acid permease BER93_RS02525 PF01544 CorA-like Mg2+ transporter protein BER93_RS02540 PF01987 Mitochondrial biogenesis AIM24 BER93_RS02545 PF01204 Trehalase BER93_RS02565 PF00675 Insulinase (Peptidase family M16) BER93_RS02565 PF05193 Peptidase M16 inactive domain BER93_RS02570 PF00989 PAS fold BER93_RS02570 PF00990 GGDEF domain BER93_RS02570 PF01590 GAF domain BER93_RS02570 PF08448 PAS fold BER93_RS02570 PF13426 PAS domain BER93_RS02585 PF00150 Cellulase (glycosyl hydrolase family 5) BER93_RS02585 PF00553 Cellulose binding domain BER93_RS02590 PF00916 BER93_RS02590 BER93_RS02590 PF01740 STAS domain BER93_RS02600 PF13632 Glycosyl transferase family group 2 BER93_RS02605 PF02230 Phospholipase/Carboxylesterase BER93_RS02615 PF00072 Response regulator receiver domain BER93_RS02615 PF04397 LytTr DNA-binding domain BER93_RS02620 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BER93_RS02620 PF03900 Porphobilinogen deaminase, C-terminal domain BER93_RS02625 PF04338 Protein of unknown function, DUF481 BER93_RS02630 PF08279 HTH domain BER93_RS02630 PF13280 BER93_RS02630 BER93_RS02635 PF08212 Lipocalin-like domain BER93_RS02645 PF00326 Prolyl oligopeptidase family BER93_RS02645 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BER93_RS02655 PF00155 Aminotransferase class I and II BER93_RS02660 PF00326 Prolyl oligopeptidase family BER93_RS02660 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BER93_RS02670 PF01678 Diaminopimelate epimerase BER93_RS02675 PF04340 Protein of unknown function, DUF484 BER93_RS02680 PF00589 Phage integrase family BER93_RS02680 PF02899 Phage integrase, N-terminal SAM-like domain BER93_RS02685 PF00227 Proteasome subunit BER93_RS02690 PF00004 ATPase family associated with various cellular activities (AAA) BER93_RS02690 PF07724 AAA domain (Cdc48 subfamily) BER93_RS02690 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_RS02700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BER93_RS02715 PF01209 ubiE/COQ5 methyltransferase family BER93_RS02720 PF00990 GGDEF domain BER93_RS02725 PF01433 Peptidase family M1 BER93_RS02725 PF09127 Leukotriene A4 hydrolase, C-terminal BER93_RS02735 PF00702 haloacid dehalogenase-like hydrolase BER93_RS02740 PF00294 pfkB family carbohydrate kinase BER93_RS02745 PF06723 MreB/Mbl protein BER93_RS02750 PF04085 rod shape-determining protein MreC BER93_RS02755 PF04093 BER93_RS02755 BER93_RS02760 PF00905 Penicillin binding protein transpeptidase domain BER93_RS02760 PF03717 Penicillin-binding Protein dimerisation domain BER93_RS02765 PF01098 BER93_RS02765 BER93_RS02770 PF00295 Glycosyl hydrolases family 28 BER93_RS02775 PF13406 Transglycosylase SLT domain BER93_RS02780 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel BER93_RS02780 PF05036 Sporulation related domain BER93_RS02785 PF00768 D-alanyl-D-alanine carboxypeptidase BER93_RS02785 PF07943 Penicillin-binding protein 5, C-terminal domain BER93_RS02790 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) BER93_RS02795 PF04359 Protein of unknown function (DUF493) BER93_RS02800 PF03099 Biotin/lipoate A/B protein ligase family BER93_RS02805 PF04055 Radical SAM superfamily BER93_RS02805 PF16881 BER93_RS02805 BER93_RS02830 PF00595 PDZ domain (Also known as DHR or GLGF) BER93_RS02830 PF03572 Peptidase family S41 BER93_RS02830 PF11818 BER93_RS02830 BER93_RS02840 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BER93_RS02860 PF10001 BER93_RS02860 BER93_RS02865 PF05433 BER93_RS02865 BER93_RS02875 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BER93_RS02875 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BER93_RS02880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BER93_RS02880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BER93_RS02885 PF04972 BON domain BER93_RS02890 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS02890 PF05227 CHASE3 domain BER93_RS02890 PF13188 PAS domain BER93_RS02895 PF00072 Response regulator receiver domain BER93_RS02900 PF00072 Response regulator receiver domain BER93_RS02900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS02905 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BER93_RS02910 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS02915 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase BER93_RS02920 PF04892 BER93_RS02920 BER93_RS02930 PF01203 BER93_RS02930 BER93_RS02935 PF00665 Integrase core domain BER93_RS02935 PF13276 BER93_RS02935 BER93_RS02935 PF13333 BER93_RS02935 BER93_RS02940 PF01527 Transposase BER93_RS02950 PF01527 Transposase BER93_RS02955 PF00392 Bacterial regulatory proteins, gntR family BER93_RS02955 PF07702 UTRA domain BER93_RS02960 PF07690 Major Facilitator Superfamily BER93_RS02965 PF00356 Bacterial regulatory proteins, lacI family BER93_RS02965 PF13377 Periplasmic binding protein-like domain BER93_RS02970 PF01380 SIS domain BER93_RS02975 PF01979 Amidohydrolase family BER93_RS02985 PF02583 Metal-sensitive transcriptional repressor BER93_RS02990 PF00107 Zinc-binding dehydrogenase BER93_RS02990 PF08240 Alcohol dehydrogenase GroES-like domain BER93_RS03000 PF00756 Putative esterase BER93_RS03015 PF01670 Glycosyl hydrolase family 12 BER93_RS03030 PF06041 Bacterial protein of unknown function (DUF924) BER93_RS03035 PF05598 BER93_RS03035 BER93_RS03045 PF01609 Transposase DDE domain BER93_RS03045 PF13340 BER93_RS03045 BER93_RS03065 PF05598 BER93_RS03065 BER93_RS03070 PF01527 Transposase BER93_RS03080 PF00462 Glutaredoxin BER93_RS03080 PF00581 Rhodanese-like domain BER93_RS03085 PF01522 Polysaccharide deacetylase BER93_RS03090 PF08242 Methyltransferase domain BER93_RS03095 PF13472 GDSL-like Lipase/Acylhydrolase family BER93_RS03100 PF00155 Aminotransferase class I and II BER93_RS03105 PF00005 ABC transporter BER93_RS03105 PF00664 ABC transporter transmembrane region BER93_RS03105 PF03412 Peptidase C39 family BER93_RS03110 PF13437 HlyD family secretion protein BER93_RS03110 PF13533 Biotin-lipoyl like BER93_RS03115 PF01609 Transposase DDE domain BER93_RS03115 PF13340 BER93_RS03115 BER93_RS03120 PF00353 Hemolysin-type calcium-binding repeat (2 copies) BER93_RS03120 PF06594 BER93_RS03120 BER93_RS03125 PF01609 Transposase DDE domain BER93_RS03125 PF13340 BER93_RS03125 BER93_RS03130 PF03193 Protein of unknown function, DUF258 BER93_RS03135 PF08014 BER93_RS03135 BER93_RS03140 PF00128 Alpha amylase, catalytic domain BER93_RS03145 PF00593 TonB dependent receptor BER93_RS03145 PF07715 TonB-dependent Receptor Plug Domain BER93_RS03150 PF07690 Major Facilitator Superfamily BER93_RS03155 PF00356 Bacterial regulatory proteins, lacI family BER93_RS03155 PF13377 Periplasmic binding protein-like domain BER93_RS03160 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS03165 PF03600 Citrate transporter BER93_RS03170 PF07396 Phosphate-selective porin O and P BER93_RS03175 PF00072 Response regulator receiver domain BER93_RS03175 PF00486 Transcriptional regulatory protein, C terminal BER93_RS03180 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS03180 PF00672 HAMP domain BER93_RS03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS03180 PF08521 BER93_RS03180 BER93_RS03185 PF13531 Bacterial extracellular solute-binding protein BER93_RS03190 PF00072 Response regulator receiver domain BER93_RS03190 PF00196 Bacterial regulatory proteins, luxR family BER93_RS03195 PF07313 Protein of unknown function (DUF1460) BER93_RS03200 PF01527 Transposase BER93_RS03215 PF01527 Transposase BER93_RS03225 PF00072 Response regulator receiver domain BER93_RS03225 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS03225 PF02743 Cache domain BER93_RS03225 PF12860 BER93_RS03225 BER93_RS03230 PF07396 Phosphate-selective porin O and P BER93_RS03235 PF00375 Sodium:dicarboxylate symporter family BER93_RS03240 PF00390 Malic enzyme, N-terminal domain BER93_RS03240 PF01515 Phosphate acetyl/butaryl transferase BER93_RS03240 PF03949 Malic enzyme, NAD binding domain BER93_RS03250 PF10276 Zinc-finger domain BER93_RS03255 PF00534 Glycosyl transferases group 1 BER93_RS03255 PF13439 Glycosyltransferase Family 4 BER93_RS03260 PF04932 BER93_RS03260 BER93_RS03265 PF03279 BER93_RS03265 BER93_RS03270 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BER93_RS03275 PF02321 Outer membrane efflux protein BER93_RS03280 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BER93_RS03285 PF00440 Bacterial regulatory proteins, tetR family BER93_RS03285 PF14246 AefR-like transcriptional repressor, C-terminal region BER93_RS03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_RS03295 PF00330 Aconitase family (aconitate hydratase) BER93_RS03300 PF00694 Aconitase C-terminal domain BER93_RS03305 PF00180 Isocitrate/isopropylmalate dehydrogenase BER93_RS03310 PF00593 TonB dependent receptor BER93_RS03310 PF07715 TonB-dependent Receptor Plug Domain BER93_RS03315 PF01609 Transposase DDE domain BER93_RS03315 PF05598 BER93_RS03315 BER93_RS03320 PF00682 HMGL-like BER93_RS03320 PF08502 LeuA allosteric (dimerisation) domain BER93_RS03325 PF00291 Pyridoxal-phosphate dependent enzyme BER93_RS03330 PF13710 ACT domain BER93_RS03335 PF00205 Thiamine pyrophosphate enzyme, central domain BER93_RS03335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BER93_RS03335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BER93_RS03340 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BER93_RS03340 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain BER93_RS03360 PF01964 ThiC family BER93_RS03360 PF13667 ThiC-associated domain BER93_RS03365 PF00486 Transcriptional regulatory protein, C terminal BER93_RS03370 PF01609 Transposase DDE domain BER93_RS03370 PF05598 BER93_RS03370 BER93_RS03375 PF12833 Helix-turn-helix domain BER93_RS03380 PF00593 TonB dependent receptor BER93_RS03380 PF07715 TonB-dependent Receptor Plug Domain BER93_RS03385 PF08668 HDOD domain BER93_RS03390 PF00719 Inorganic pyrophosphatase BER93_RS03400 PF03030 Inorganic H+ pyrophosphatase BER93_RS03420 PF00365 Phosphofructokinase BER93_RS03425 PF00406 Adenylate kinase BER93_RS03430 PF01225 Mur ligase family, catalytic domain BER93_RS03430 PF02875 Mur ligase family, glutamate ligase domain BER93_RS03430 PF08245 Mur ligase middle domain BER93_RS03435 PF02190 ATP-dependent protease La (LON) domain BER93_RS03445 PF01569 PAP2 superfamily BER93_RS03445 PF09335 BER93_RS03445 BER93_RS03445 PF14067 BER93_RS03445 BER93_RS03455 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS03460 PF12889 Protein of unknown function (DUF3829) BER93_RS03465 PF01609 Transposase DDE domain BER93_RS03465 PF05598 BER93_RS03465 BER93_RS03475 PF00202 Aminotransferase class-III BER93_RS03480 PF00202 Aminotransferase class-III BER93_RS03485 PF02581 Thiamine monophosphate synthase/TENI BER93_RS03490 PF00301 Rubredoxin BER93_RS03495 PF13369 BER93_RS03495 BER93_RS03495 PF13371 Tetratricopeptide repeat BER93_RS03500 PF02643 Uncharacterized ACR, COG1430 BER93_RS03505 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BER93_RS03510 PF01878 EVE domain BER93_RS03515 PF01812 5-formyltetrahydrofolate cyclo-ligase family BER93_RS03525 PF05164 Cell division protein ZapA BER93_RS03535 PF03695 Uncharacterised protein family (UPF0149) BER93_RS03540 PF00557 Metallopeptidase family M24 BER93_RS03540 PF05195 Aminopeptidase P, N-terminal domain BER93_RS03545 PF00557 Metallopeptidase family M24 BER93_RS03560 PF04055 Radical SAM superfamily BER93_RS03560 PF06969 HemN C-terminal domain BER93_RS03565 PF01725 Ham1 family BER93_RS03570 PF01138 3' exoribonuclease family, domain 1 BER93_RS03570 PF03725 3' exoribonuclease family, domain 2 BER93_RS03575 PF03755 BER93_RS03575 BER93_RS03575 PF08340 BER93_RS03575 BER93_RS03580 PF00625 Guanylate kinase BER93_RS03585 PF01192 RNA polymerase Rpb6 BER93_RS03590 PF02824 TGS domain BER93_RS03590 PF04607 Region found in RelA / SpoT proteins BER93_RS03590 PF13291 ACT domain BER93_RS03590 PF13328 HD domain BER93_RS03595 PF01042 Endoribonuclease L-PSP BER93_RS03600 PF00270 DEAD/DEAH box helicase BER93_RS03600 PF00271 Helicase conserved C-terminal domain BER93_RS03600 PF17191 BER93_RS03600 BER93_RS03605 PF01609 Transposase DDE domain BER93_RS03610 PF01156 Inosine-uridine preferring nucleoside hydrolase BER93_RS03615 PF01197 Ribosomal protein L31 BER93_RS03620 PF00285 Citrate synthase BER93_RS03630 PF00905 Penicillin binding protein transpeptidase domain BER93_RS03630 PF00912 Transglycosylase BER93_RS03630 PF17092 BER93_RS03630 BER93_RS03635 PF11104 Type IV pilus assembly protein PilM; BER93_RS03640 PF05137 BER93_RS03640 BER93_RS03645 PF04350 Pilus assembly protein, PilO BER93_RS03650 PF04351 Pilus assembly protein, PilP BER93_RS03655 PF00263 BER93_RS03655 BER93_RS03655 PF03958 Bacterial type II/III secretion system short domain BER93_RS03655 PF07660 Secretin and TonB N terminus short domain BER93_RS03660 PF01609 Transposase DDE domain BER93_RS03660 PF05598 BER93_RS03660 BER93_RS03665 PF01609 Transposase DDE domain BER93_RS03665 PF13340 BER93_RS03665 BER93_RS03670 PF01609 Transposase DDE domain BER93_RS03670 PF13340 BER93_RS03670 BER93_RS03675 PF01609 Transposase DDE domain BER93_RS03690 PF01609 Transposase DDE domain BER93_RS03695 PF02021 Uncharacterised protein family UPF0102 BER93_RS03700 PF04348 LppC putative lipoprotein BER93_RS03705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BER93_RS03720 PF01845 CcdB protein BER93_RS03725 PF07362 Post-segregation antitoxin CcdA BER93_RS03730 PF05742 BER93_RS03730 BER93_RS03735 PF02381 MraZ protein BER93_RS03740 PF01795 MraW methylase family BER93_RS03745 PF04999 BER93_RS03745 BER93_RS03750 PF00905 Penicillin binding protein transpeptidase domain BER93_RS03750 PF03717 Penicillin-binding Protein dimerisation domain BER93_RS03755 PF01225 Mur ligase family, catalytic domain BER93_RS03755 PF02875 Mur ligase family, glutamate ligase domain BER93_RS03755 PF08245 Mur ligase middle domain BER93_RS03760 PF01225 Mur ligase family, catalytic domain BER93_RS03760 PF02875 Mur ligase family, glutamate ligase domain BER93_RS03760 PF08245 Mur ligase middle domain BER93_RS03765 PF00953 Glycosyl transferase family 4 BER93_RS03770 PF01098 BER93_RS03770 BER93_RS03775 PF03033 Glycosyltransferase family 28 N-terminal domain BER93_RS03775 PF04101 Glycosyltransferase family 28 C-terminal domain BER93_RS03780 PF01225 Mur ligase family, catalytic domain BER93_RS03780 PF02875 Mur ligase family, glutamate ligase domain BER93_RS03780 PF08245 Mur ligase middle domain BER93_RS03785 PF01820 D-ala D-ala ligase N-terminus BER93_RS03785 PF07478 D-ala D-ala ligase C-terminus BER93_RS03790 PF03799 Cell division protein FtsQ BER93_RS03790 PF08478 POTRA domain, FtsQ-type BER93_RS03795 PF02491 SHS2 domain inserted in FTSA BER93_RS03795 PF14450 Cell division protein FtsA BER93_RS03800 PF00091 Tubulin/FtsZ family, GTPase domain BER93_RS03800 PF12327 FtsZ family, C-terminal domain BER93_RS03805 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BER93_RS03810 PF05258 BER93_RS03810 BER93_RS03815 PF01551 Peptidase family M23 BER93_RS03820 PF01043 SecA preprotein cross-linking domain BER93_RS03820 PF02810 SEC-C motif BER93_RS03820 PF07516 SecA Wing and Scaffold domain BER93_RS03820 PF07517 SecA DEAD-like domain BER93_RS03830 PF00293 NUDIX domain BER93_RS03830 PF02581 Thiamine monophosphate synthase/TENI BER93_RS03840 PF02219 Methylenetetrahydrofolate reductase BER93_RS03850 PF08240 Alcohol dehydrogenase GroES-like domain BER93_RS03850 PF13602 Zinc-binding dehydrogenase BER93_RS03860 PF02902 Ulp1 protease family, C-terminal catalytic domain BER93_RS03865 PF01609 Transposase DDE domain BER93_RS03865 PF13340 BER93_RS03865 BER93_RS03870 PF01609 Transposase DDE domain BER93_RS03870 PF05598 BER93_RS03870 BER93_RS03875 PF01527 Transposase BER93_RS03885 PF01121 Dephospho-CoA kinase BER93_RS03890 PF01478 Type IV leader peptidase family BER93_RS03890 PF06750 BER93_RS03890 BER93_RS03895 PF00482 Type II secretion system (T2SS), protein F BER93_RS03900 PF00114 Pilin (bacterial filament) BER93_RS03900 PF13633 Prokaryotic N-terminal methylation site BER93_RS03905 PF00437 Type II/IV secretion system protein BER93_RS03905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BER93_RS03920 PF02661 Fic/DOC family BER93_RS03925 PF00072 Response regulator receiver domain BER93_RS03925 PF00158 Sigma-54 interaction domain BER93_RS03925 PF02954 Bacterial regulatory protein, Fis family BER93_RS03930 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS03930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS03935 PF00549 CoA-ligase BER93_RS03935 PF08442 ATP-grasp domain BER93_RS03940 PF00549 CoA-ligase BER93_RS03940 PF02629 CoA binding domain BER93_RS03945 PF00795 Carbon-nitrogen hydrolase BER93_RS03945 PF02540 NAD synthase BER93_RS03950 PF13525 Outer membrane lipoprotein BER93_RS03955 PF00849 RNA pseudouridylate synthase BER93_RS03960 PF02578 Multi-copper polyphenol oxidoreductase laccase BER93_RS03965 PF01011 PQQ enzyme repeat BER93_RS03965 PF13360 PQQ-like domain BER93_RS03975 PF01609 Transposase DDE domain BER93_RS03985 PF00982 Glycosyltransferase family 20 BER93_RS03990 PF00723 Glycosyl hydrolases family 15 BER93_RS03995 PF02358 Trehalose-phosphatase BER93_RS04000 PF00593 TonB dependent receptor BER93_RS04000 PF07715 TonB-dependent Receptor Plug Domain BER93_RS04005 PF12098 BER93_RS04005 BER93_RS04010 PF14486 Domain of unknown function (DUF4432) BER93_RS04025 PF14497 Glutathione S-transferase, C-terminal domain BER93_RS04030 PF01541 GIY-YIG catalytic domain BER93_RS04040 PF01527 Transposase BER93_RS04045 PF00589 Phage integrase family BER93_RS04055 PF06508 Queuosine biosynthesis protein QueC BER93_RS04070 PF01479 S4 domain BER93_RS04075 PF00072 Response regulator receiver domain BER93_RS04085 PF00270 DEAD/DEAH box helicase BER93_RS04085 PF00271 Helicase conserved C-terminal domain BER93_RS04085 PF00570 HRDC domain BER93_RS04085 PF09382 RQC domain BER93_RS04085 PF16124 BER93_RS04085 BER93_RS04090 PF00210 Ferritin-like domain BER93_RS04095 PF00270 DEAD/DEAH box helicase BER93_RS04095 PF00271 Helicase conserved C-terminal domain BER93_RS04095 PF04408 Helicase associated domain (HA2) BER93_RS04095 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BER93_RS04095 PF11898 BER93_RS04095 BER93_RS04100 PF04055 Radical SAM superfamily BER93_RS04100 PF13186 Iron-sulfur cluster-binding domain BER93_RS04100 PF13353 4Fe-4S single cluster domain BER93_RS04105 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BER93_RS04110 PF03070 TENA/THI-4/PQQC family BER93_RS04115 PF12706 Beta-lactamase superfamily domain BER93_RS04120 PF02824 TGS domain BER93_RS04120 PF04607 Region found in RelA / SpoT proteins BER93_RS04120 PF13291 ACT domain BER93_RS04120 PF13328 HD domain BER93_RS04130 PF00535 Glycosyl transferase family 2 BER93_RS04130 PF13692 Glycosyl transferases group 1 BER93_RS04135 PF00905 Penicillin binding protein transpeptidase domain BER93_RS04135 PF00912 Transglycosylase BER93_RS04135 PF14814 Bifunctional transglycosylase second domain BER93_RS04145 PF00270 DEAD/DEAH box helicase BER93_RS04145 PF13307 Helicase C-terminal domain BER93_RS04150 PF00814 Glycoprotease family BER93_RS04155 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_RS04160 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BER93_RS04160 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BER93_RS04165 PF00072 Response regulator receiver domain BER93_RS04170 PF00072 Response regulator receiver domain BER93_RS04175 PF01584 CheW-like domain BER93_RS04180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS04185 PF00072 Response regulator receiver domain BER93_RS04185 PF01584 CheW-like domain BER93_RS04185 PF01627 Hpt domain BER93_RS04185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS04185 PF02895 Signal transducing histidine kinase, homodimeric domain BER93_RS04190 PF01339 CheB methylesterase BER93_RS04200 PF13302 Acetyltransferase (GNAT) domain BER93_RS04215 PF03932 CutC family BER93_RS04220 PF00560 Leucine Rich Repeat BER93_RS04235 PF00754 F5/8 type C domain BER93_RS04235 PF01120 Alpha-L-fucosidase BER93_RS04240 PF00665 Integrase core domain BER93_RS04240 PF13936 Helix-turn-helix domain BER93_RS04245 PF05954 Phage late control gene D protein (GPD) BER93_RS04255 PF09937 BER93_RS04255 BER93_RS04260 PF01609 Transposase DDE domain BER93_RS04265 PF09937 BER93_RS04265 BER93_RS04270 PF13665 BER93_RS04270 BER93_RS04270 PF14414 BER93_RS04270 BER93_RS04275 PF14568 SMI1-KNR4 cell-wall BER93_RS04280 PF01527 Transposase BER93_RS04285 PF00665 Integrase core domain BER93_RS04290 PF00133 tRNA synthetases class I (I, L, M and V) BER93_RS04290 PF08264 Anticodon-binding domain of tRNA BER93_RS04290 PF10458 Valyl tRNA synthetase tRNA binding arm BER93_RS04295 PF04364 DNA polymerase III chi subunit, HolC BER93_RS04300 PF00883 Cytosol aminopeptidase family, catalytic domain BER93_RS04300 PF02789 Cytosol aminopeptidase family, N-terminal domain BER93_RS04305 PF03739 BER93_RS04305 BER93_RS04310 PF03739 BER93_RS04310 BER93_RS04320 PF06271 BER93_RS04320 BER93_RS04325 PF00589 Phage integrase family BER93_RS04325 PF02899 Phage integrase, N-terminal SAM-like domain BER93_RS04330 PF10411 Disulfide bond isomerase protein N-terminus BER93_RS04330 PF13098 Thioredoxin-like domain BER93_RS04335 PF02769 AIR synthase related protein, C-terminal domain BER93_RS04335 PF13507 CobB/CobQ-like glutamine amidotransferase domain BER93_RS04345 PF03895 YadA-like C-terminal region BER93_RS04345 PF05658 Head domain of trimeric autotransporter adhesin BER93_RS04345 PF05662 Coiled stalk of trimeric autotransporter adhesin BER93_RS04350 PF00082 Subtilase family BER93_RS04350 PF04151 Bacterial pre-peptidase C-terminal domain BER93_RS04355 PF00437 Type II/IV secretion system protein BER93_RS04355 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BER93_RS04360 PF00482 Type II secretion system (T2SS), protein F BER93_RS04365 PF08334 Type II secretion system (T2SS), protein G BER93_RS04370 PF12019 Type II transport protein GspH BER93_RS04375 PF13544 BER93_RS04375 BER93_RS04385 PF03934 Type II secretion system (T2SS), protein K BER93_RS04390 PF05137 BER93_RS04390 BER93_RS04395 PF10741 BER93_RS04395 BER93_RS04405 PF00263 BER93_RS04405 BER93_RS04405 PF03958 Bacterial type II/III secretion system short domain BER93_RS04410 PF00535 Glycosyl transferase family 2 BER93_RS04415 PF00392 Bacterial regulatory proteins, gntR family BER93_RS04415 PF07702 UTRA domain BER93_RS04420 PF04973 BER93_RS04420 BER93_RS04425 PF00593 TonB dependent receptor BER93_RS04425 PF07715 TonB-dependent Receptor Plug Domain BER93_RS04430 PF01636 Phosphotransferase enzyme family BER93_RS04435 PF00535 Glycosyl transferase family 2 BER93_RS04440 PF13586 BER93_RS04440 BER93_RS04450 PF02225 PA domain BER93_RS04465 PF01327 Polypeptide deformylase BER93_RS04470 PF00005 ABC transporter BER93_RS04470 PF12848 ABC transporter BER93_RS04475 PF11776 Domain of unknown function (DUF3315) BER93_RS04480 PF00464 Serine hydroxymethyltransferase BER93_RS04485 PF03477 ATP cone domain BER93_RS04490 PF00583 Acetyltransferase (GNAT) family BER93_RS04495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BER93_RS04495 PF01872 RibD C-terminal domain BER93_RS04500 PF01609 Transposase DDE domain BER93_RS04505 PF01609 Transposase DDE domain BER93_RS04505 PF05598 BER93_RS04505 BER93_RS04515 PF01609 Transposase DDE domain BER93_RS04515 PF05598 BER93_RS04515 BER93_RS04520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BER93_RS04530 PF09831 BER93_RS04530 BER93_RS04535 PF11539 Protein of unknown function (DUF3228) BER93_RS04540 PF13505 Outer membrane protein beta-barrel domain BER93_RS04550 PF00685 Sulfotransferase domain BER93_RS04555 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BER93_RS04555 PF05221 S-adenosyl-L-homocysteine hydrolase BER93_RS04565 PF00311 Phosphoenolpyruvate carboxylase BER93_RS04570 PF00440 Bacterial regulatory proteins, tetR family BER93_RS04575 PF13387 BER93_RS04575 BER93_RS04585 PF00438 S-adenosylmethionine synthetase, N-terminal domain BER93_RS04585 PF02772 S-adenosylmethionine synthetase, central domain BER93_RS04585 PF02773 S-adenosylmethionine synthetase, C-terminal domain BER93_RS04590 PF04307 BER93_RS04590 BER93_RS04595 PF08241 Methyltransferase domain BER93_RS04600 PF01207 Dihydrouridine synthase (Dus) BER93_RS04610 PF04011 LemA family BER93_RS04615 PF01219 Prokaryotic diacylglycerol kinase BER93_RS04625 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS04630 PF00072 Response regulator receiver domain BER93_RS04630 PF00486 Transcriptional regulatory protein, C terminal BER93_RS04635 PF13472 GDSL-like Lipase/Acylhydrolase family BER93_RS04640 PF00005 ABC transporter BER93_RS04645 PF02687 BER93_RS04645 BER93_RS04660 PF05598 BER93_RS04660 BER93_RS04665 PF04342 BER93_RS04665 BER93_RS04675 PF10636 Hemin uptake protein hemP BER93_RS04680 PF00248 Aldo/keto reductase family BER93_RS04685 PF01773 Na+ dependent nucleoside transporter N-terminus BER93_RS04685 PF07662 Na+ dependent nucleoside transporter C-terminus BER93_RS04685 PF07670 Nucleoside recognition BER93_RS04690 PF00294 pfkB family carbohydrate kinase BER93_RS04695 PF04536 TLP18 BER93_RS04700 PF04536 TLP18 BER93_RS04705 PF01790 BER93_RS04705 BER93_RS04710 PF00303 Thymidylate synthase BER93_RS04720 PF00186 Dihydrofolate reductase BER93_RS04725 PF00149 Calcineurin-like phosphoesterase BER93_RS04730 PF04379 Protein of unknown function (DUF525) BER93_RS04735 PF00398 Ribosomal RNA adenine dimethylase BER93_RS04740 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BER93_RS04745 PF00639 PPIC-type PPIASE domain BER93_RS04745 PF09312 SurA N-terminal domain BER93_RS04745 PF13616 PPIC-type PPIASE domain BER93_RS04750 PF03968 OstA-like protein BER93_RS04750 PF04453 Organic solvent tolerance protein BER93_RS04755 PF00850 Histone deacetylase domain BER93_RS04760 PF01923 Cobalamin adenosyltransferase BER93_RS04770 PF01494 FAD binding domain BER93_RS04775 PF01494 FAD binding domain BER93_RS04790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_RS04790 PF03466 LysR substrate binding domain BER93_RS04810 PF08450 SMP-30/Gluconolaconase/LRE-like region BER93_RS04815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BER93_RS04820 PF01728 FtsJ-like methyltransferase BER93_RS04825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BER93_RS04835 PF00749 tRNA synthetases class I (E and Q), catalytic domain BER93_RS04835 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BER93_RS04840 PF13409 Glutathione S-transferase, N-terminal domain BER93_RS04845 PF09413 Domain of unknown function (DUF2007) BER93_RS04850 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS04855 PF00196 Bacterial regulatory proteins, luxR family BER93_RS04860 PF01625 Peptide methionine sulfoxide reductase BER93_RS04865 PF00923 Transaldolase BER93_RS04870 PF01272 Transcription elongation factor, GreA/GreB, C-term BER93_RS04870 PF14760 Rnk N-terminus BER93_RS04875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_RS04875 PF03466 LysR substrate binding domain BER93_RS04880 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_RS04880 PF13192 Thioredoxin domain BER93_RS04885 PF00578 AhpC/TSA family BER93_RS04885 PF10417 C-terminal domain of 1-Cys peroxiredoxin BER93_RS04890 PF05175 Methyltransferase small domain BER93_RS04895 PF00561 alpha/beta hydrolase fold BER93_RS04905 PF05013 N-formylglutamate amidohydrolase BER93_RS04910 PF00293 NUDIX domain BER93_RS04915 PF01367 5'-3' exonuclease, C-terminal SAM fold BER93_RS04915 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BER93_RS04920 PF00881 Nitroreductase family BER93_RS04925 PF07793 BER93_RS04925 BER93_RS04930 PF11304 BER93_RS04930 BER93_RS04940 PF04542 Sigma-70 region 2 BER93_RS04940 PF08281 Sigma-70, region 4 BER93_RS04950 PF01883 Domain of unknown function DUF59 BER93_RS04955 PF01063 Aminotransferase class IV BER93_RS04960 PF01609 Transposase DDE domain BER93_RS04970 PF00082 Subtilase family BER93_RS04970 PF04151 Bacterial pre-peptidase C-terminal domain BER93_RS04975 PF04073 Aminoacyl-tRNA editing domain BER93_RS04980 PF00710 Asparaginase BER93_RS04985 PF09842 BER93_RS04985 BER93_RS04990 PF03358 NADPH-dependent FMN reductase BER93_RS04995 PF03631 BER93_RS04995 BER93_RS05000 PF00578 AhpC/TSA family BER93_RS05010 PF03976 Polyphosphate kinase 2 (PPK2) BER93_RS05015 PF00994 Probable molybdopterin binding domain BER93_RS05020 PF13844 Glycosyl transferase family 41 BER93_RS05025 PF00472 RF-1 domain BER93_RS05025 PF03462 PCRF domain BER93_RS05030 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BER93_RS05030 PF01488 Shikimate / quinate 5-dehydrogenase BER93_RS05030 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BER93_RS05035 PF13432 Tetratricopeptide repeat BER93_RS05035 PF14559 Tetratricopeptide repeat BER93_RS05040 PF03550 Outer membrane lipoprotein LolB BER93_RS05045 PF00288 GHMP kinases N terminal domain BER93_RS05045 PF08544 GHMP kinases C terminal BER93_RS05055 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BER93_RS05055 PF14572 Phosphoribosyl synthetase-associated domain BER93_RS05060 PF01386 Ribosomal L25p family BER93_RS05060 PF14693 Ribosomal protein TL5, C-terminal domain BER93_RS05065 PF01195 Peptidyl-tRNA hydrolase BER93_RS05070 PF01926 50S ribosome-binding GTPase BER93_RS05070 PF06071 Protein of unknown function (DUF933) BER93_RS05090 PF00009 Elongation factor Tu GTP binding domain BER93_RS05090 PF03143 Elongation factor Tu C-terminal domain BER93_RS05090 PF03144 Elongation factor Tu domain 2 BER93_RS05100 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BER93_RS05105 PF00467 KOW motif BER93_RS05105 PF02357 Transcription termination factor nusG BER93_RS05110 PF00298 Ribosomal protein L11, RNA binding domain BER93_RS05110 PF03946 Ribosomal protein L11, N-terminal domain BER93_RS05115 PF00687 Ribosomal protein L1p/L10e family BER93_RS05120 PF00466 Ribosomal protein L10 BER93_RS05125 PF00542 Ribosomal protein L7/L12 C-terminal domain BER93_RS05125 PF16320 BER93_RS05125 BER93_RS05130 PF00562 RNA polymerase Rpb2, domain 6 BER93_RS05130 PF04560 RNA polymerase Rpb2, domain 7 BER93_RS05130 PF04561 RNA polymerase Rpb2, domain 2 BER93_RS05130 PF04563 RNA polymerase beta subunit BER93_RS05130 PF04565 RNA polymerase Rpb2, domain 3 BER93_RS05130 PF10385 RNA polymerase beta subunit external 1 domain BER93_RS05135 PF00623 RNA polymerase Rpb1, domain 2 BER93_RS05135 PF04983 RNA polymerase Rpb1, domain 3 BER93_RS05135 PF04997 RNA polymerase Rpb1, domain 1 BER93_RS05135 PF04998 RNA polymerase Rpb1, domain 5 BER93_RS05135 PF05000 RNA polymerase Rpb1, domain 4 BER93_RS05140 PF00164 Ribosomal protein S12/S23 BER93_RS05145 PF00177 Ribosomal protein S7p/S5e BER93_RS05150 PF00009 Elongation factor Tu GTP binding domain BER93_RS05150 PF00679 Elongation factor G C-terminus BER93_RS05150 PF03144 Elongation factor Tu domain 2 BER93_RS05150 PF03764 Elongation factor G, domain IV BER93_RS05150 PF14492 Elongation Factor G, domain II BER93_RS05155 PF00009 Elongation factor Tu GTP binding domain BER93_RS05155 PF03143 Elongation factor Tu C-terminal domain BER93_RS05155 PF03144 Elongation factor Tu domain 2 BER93_RS05160 PF00338 Ribosomal protein S10p/S20e BER93_RS05165 PF00297 Ribosomal protein L3 BER93_RS05170 PF00573 Ribosomal protein L4/L1 family BER93_RS05175 PF00276 Ribosomal protein L23 BER93_RS05180 PF00181 Ribosomal Proteins L2, RNA binding domain BER93_RS05180 PF03947 Ribosomal Proteins L2, C-terminal domain BER93_RS05185 PF00203 Ribosomal protein S19 BER93_RS05190 PF00237 Ribosomal protein L22p/L17e BER93_RS05195 PF00189 Ribosomal protein S3, C-terminal domain BER93_RS05195 PF07650 KH domain BER93_RS05200 PF00252 Ribosomal protein L16p/L10e BER93_RS05205 PF00831 Ribosomal L29 protein BER93_RS05210 PF00366 Ribosomal protein S17 BER93_RS05215 PF00238 Ribosomal protein L14p/L23e BER93_RS05220 PF00467 KOW motif BER93_RS05220 PF17136 BER93_RS05220 BER93_RS05225 PF00281 Ribosomal protein L5 BER93_RS05225 PF00673 ribosomal L5P family C-terminus BER93_RS05230 PF00253 Ribosomal protein S14p/S29e BER93_RS05235 PF00410 Ribosomal protein S8 BER93_RS05240 PF00347 Ribosomal protein L6 BER93_RS05245 PF00861 Ribosomal L18p/L5e family BER93_RS05250 PF00333 Ribosomal protein S5, N-terminal domain BER93_RS05250 PF03719 Ribosomal protein S5, C-terminal domain BER93_RS05255 PF00327 Ribosomal protein L30p/L7e BER93_RS05260 PF00828 Ribosomal protein L18e/L15 BER93_RS05265 PF00344 SecY translocase BER93_RS05270 PF00416 Ribosomal protein S13/S18 BER93_RS05275 PF00411 Ribosomal protein S11 BER93_RS05280 PF00163 Ribosomal protein S4/S9 N-terminal domain BER93_RS05280 PF01479 S4 domain BER93_RS05285 PF01000 RNA polymerase Rpb3/RpoA insert domain BER93_RS05285 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BER93_RS05285 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BER93_RS05290 PF01196 Ribosomal protein L17 BER93_RS05295 PF02600 Disulfide bond formation protein DsbB BER93_RS05310 PF01609 Transposase DDE domain BER93_RS05315 PF00135 Carboxylesterase family BER93_RS05330 PF03080 BER93_RS05330 BER93_RS05340 PF01741 Large-conductance mechanosensitive channel, MscL BER93_RS05345 PF01557 Fumarylacetoacetate (FAA) hydrolase family BER93_RS05355 PF02080 TrkA-C domain BER93_RS05355 PF03600 Citrate transporter BER93_RS05360 PF02390 Putative methyltransferase BER93_RS05365 PF05690 Thiazole biosynthesis protein ThiG BER93_RS05370 PF02597 ThiS family BER93_RS05375 PF00657 GDSL-like Lipase/Acylhydrolase BER93_RS05375 PF03797 Autotransporter beta-domain BER93_RS05385 PF00589 Phage integrase family BER93_RS05385 PF13356 Domain of unknown function (DUF4102) BER93_RS05395 PF01609 Transposase DDE domain BER93_RS05395 PF13340 BER93_RS05395 BER93_RS05410 PF13560 Helix-turn-helix domain BER93_RS05415 PF03466 LysR substrate binding domain BER93_RS05420 PF01609 Transposase DDE domain BER93_RS05420 PF13340 BER93_RS05420 BER93_RS05430 PF00665 Integrase core domain BER93_RS05430 PF13276 BER93_RS05430 BER93_RS05435 PF01527 Transposase BER93_RS05440 PF07514 Putative helicase BER93_RS05445 PF00990 GGDEF domain BER93_RS05455 PF08843 Nucleotidyl transferase of unknown function (DUF1814) BER93_RS05460 PF11459 BER93_RS05460 BER93_RS05460 PF17194 BER93_RS05460 BER93_RS05465 PF12553 BER93_RS05465 BER93_RS05470 PF07916 BER93_RS05470 BER93_RS05475 PF01609 Transposase DDE domain BER93_RS05485 PF13271 BER93_RS05485 BER93_RS05515 PF13560 Helix-turn-helix domain BER93_RS05520 PF02534 Type IV secretory system Conjugative DNA transfer BER93_RS05535 PF01471 Putative peptidoglycan binding domain BER93_RS05545 PF00005 ABC transporter BER93_RS05545 PF00664 ABC transporter transmembrane region BER93_RS05545 PF03412 Peptidase C39 family BER93_RS05555 PF01609 Transposase DDE domain BER93_RS05555 PF13340 BER93_RS05555 BER93_RS05585 PF01527 Transposase BER93_RS05605 PF01156 Inosine-uridine preferring nucleoside hydrolase BER93_RS05615 PF00440 Bacterial regulatory proteins, tetR family BER93_RS05620 PF00300 Histidine phosphatase superfamily (branch 1) BER93_RS05625 PF01256 Carbohydrate kinase BER93_RS05635 PF01609 Transposase DDE domain BER93_RS05635 PF13340 BER93_RS05635 BER93_RS05645 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS05655 PF00027 Cyclic nucleotide-binding domain BER93_RS05655 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_RS05660 PF00563 EAL domain BER93_RS05665 PF13328 HD domain BER93_RS05675 PF04452 RNA methyltransferase BER93_RS05680 PF00202 Aminotransferase class-III BER93_RS05685 PF00293 NUDIX domain BER93_RS05690 PF00459 Inositol monophosphatase family BER93_RS05695 PF03819 MazG nucleotide pyrophosphohydrolase domain BER93_RS05700 PF01571 Aminomethyltransferase folate-binding domain BER93_RS05700 PF08669 Glycine cleavage T-protein C-terminal barrel domain BER93_RS05705 PF01597 Glycine cleavage H-protein BER93_RS05715 PF00144 Beta-lactamase BER93_RS05725 PF06993 BER93_RS05725 BER93_RS05730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_RS05730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_RS05730 PF09317 BER93_RS05730 BER93_RS05740 PF00440 Bacterial regulatory proteins, tetR family BER93_RS05755 PF01609 Transposase DDE domain BER93_RS05755 PF05598 BER93_RS05755 BER93_RS05760 PF13419 Haloacid dehalogenase-like hydrolase BER93_RS05765 PF01609 Transposase DDE domain BER93_RS05775 PF01527 Transposase BER93_RS05785 PF01430 Hsp33 protein BER93_RS05790 PF00912 Transglycosylase BER93_RS05795 PF00535 Glycosyl transferase family 2 BER93_RS05800 PF00571 CBS domain BER93_RS05805 PF05170 BER93_RS05805 BER93_RS05810 PF03006 BER93_RS05810 BER93_RS05815 PF00009 Elongation factor Tu GTP binding domain BER93_RS05815 PF16658 BER93_RS05815 BER93_RS05830 PF00561 alpha/beta hydrolase fold BER93_RS05835 PF01053 Cys/Met metabolism PLP-dependent enzyme BER93_RS05840 PF00742 Homoserine dehydrogenase BER93_RS05840 PF03447 Homoserine dehydrogenase, NAD binding domain BER93_RS05845 PF00561 alpha/beta hydrolase fold BER93_RS05855 PF01053 Cys/Met metabolism PLP-dependent enzyme BER93_RS05865 PF05768 Glutaredoxin-like domain (DUF836) BER93_RS05870 PF04264 YceI-like domain BER93_RS05875 PF01292 Prokaryotic cytochrome b561 BER93_RS05880 PF04264 YceI-like domain BER93_RS05885 PF00072 Response regulator receiver domain BER93_RS05885 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS05885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS05885 PF07494 Two component regulator propeller BER93_RS05885 PF07495 Y_Y_Y domain BER93_RS05895 PF06891 BER93_RS05895 BER93_RS05900 PF01263 Aldose 1-epimerase BER93_RS05905 PF01578 BER93_RS05905 BER93_RS05910 PF00448 SRP54-type protein, GTPase domain BER93_RS05910 PF02881 SRP54-type protein, helical bundle domain BER93_RS05910 PF02978 Signal peptide binding domain BER93_RS05920 PF03060 Nitronate monooxygenase BER93_RS05925 PF01063 Aminotransferase class IV BER93_RS05930 PF00886 Ribosomal protein S16 BER93_RS05935 PF01782 RimM N-terminal domain BER93_RS05935 PF05239 PRC-barrel domain BER93_RS05940 PF01746 tRNA (Guanine-1)-methyltransferase BER93_RS05945 PF01245 Ribosomal protein L19 BER93_RS05950 PF01554 MatE BER93_RS05955 PF01479 S4 domain BER93_RS05960 PF05598 BER93_RS05960 BER93_RS05975 PF01609 Transposase DDE domain BER93_RS05985 PF00990 GGDEF domain BER93_RS06000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BER93_RS06000 PF02824 TGS domain BER93_RS06000 PF03129 Anticodon binding domain BER93_RS06000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BER93_RS06005 PF00707 Translation initiation factor IF-3, C-terminal domain BER93_RS06005 PF05198 Translation initiation factor IF-3, N-terminal domain BER93_RS06010 PF01632 Ribosomal protein L35 BER93_RS06015 PF00453 Ribosomal protein L20 BER93_RS06020 PF01409 tRNA synthetases class II core domain (F) BER93_RS06020 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BER93_RS06025 PF01588 Putative tRNA binding domain BER93_RS06025 PF03147 Ferredoxin-fold anticodon binding domain BER93_RS06025 PF03483 B3/4 domain BER93_RS06025 PF03484 tRNA synthetase B5 domain BER93_RS06030 PF00216 Bacterial DNA-binding protein BER93_RS06035 PF13411 MerR HTH family regulatory protein BER93_RS06045 PF02563 Polysaccharide biosynthesis/export protein BER93_RS06045 PF10531 SLBB domain BER93_RS06050 PF02706 Chain length determinant protein BER93_RS06050 PF13807 BER93_RS06050 BER93_RS06055 PF02397 BER93_RS06055 BER93_RS06055 PF13727 CoA-binding domain BER93_RS06065 PF01757 BER93_RS06065 BER93_RS06070 PF01757 BER93_RS06070 BER93_RS06075 PF00534 Glycosyl transferases group 1 BER93_RS06075 PF13439 Glycosyltransferase Family 4 BER93_RS06080 PF13692 Glycosyl transferases group 1 BER93_RS06085 PF13440 BER93_RS06085 BER93_RS06095 PF04230 BER93_RS06095 BER93_RS06100 PF03808 BER93_RS06100 BER93_RS06110 PF02779 Transketolase, pyrimidine binding domain BER93_RS06110 PF02780 Transketolase, C-terminal domain BER93_RS06110 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BER93_RS06120 PF14279 BER93_RS06120 BER93_RS06125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_RS06125 PF02770 Acyl-CoA dehydrogenase, middle domain BER93_RS06125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_RS06125 PF12418 BER93_RS06125 BER93_RS06125 PF12806 BER93_RS06125 BER93_RS06130 PF03168 Late embryogenesis abundant protein BER93_RS06135 PF08212 Lipocalin-like domain BER93_RS06160 PF10685 BER93_RS06160 BER93_RS06170 PF10294 Putative methyltransferase BER93_RS06190 PF04362 Bacterial Fe(2+) trafficking BER93_RS06195 PF00633 Helix-hairpin-helix motif BER93_RS06195 PF00730 HhH-GPD superfamily base excision DNA repair protein BER93_RS06195 PF14815 NUDIX domain BER93_RS06200 PF00448 SRP54-type protein, GTPase domain BER93_RS06200 PF02881 SRP54-type protein, helical bundle domain BER93_RS06205 PF08448 PAS fold BER93_RS06205 PF12833 Helix-turn-helix domain BER93_RS06210 PF05544 Proline racemase BER93_RS06215 PF01266 FAD dependent oxidoreductase BER93_RS06220 PF13510 2Fe-2S iron-sulfur cluster binding domain BER93_RS06225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_RS06230 PF00701 Dihydrodipicolinate synthetase family BER93_RS06235 PF00171 Aldehyde dehydrogenase family BER93_RS06240 PF00557 Metallopeptidase family M24 BER93_RS06240 PF01321 Creatinase/Prolidase N-terminal domain BER93_RS06245 PF05960 Bacterial protein of unknown function (DUF885) BER93_RS06250 PF05960 Bacterial protein of unknown function (DUF885) BER93_RS06255 PF13520 Amino acid permease BER93_RS06260 PF00326 Prolyl oligopeptidase family BER93_RS06260 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BER93_RS06265 PF01301 Glycosyl hydrolases family 35 BER93_RS06280 PF01609 Transposase DDE domain BER93_RS06280 PF05598 BER93_RS06280 BER93_RS06290 PF00082 Subtilase family BER93_RS06290 PF09286 Pro-kumamolisin, activation domain BER93_RS06300 PF00593 TonB dependent receptor BER93_RS06300 PF07715 TonB-dependent Receptor Plug Domain BER93_RS06315 PF00326 Prolyl oligopeptidase family BER93_RS06320 PF00593 TonB dependent receptor BER93_RS06320 PF07715 TonB-dependent Receptor Plug Domain BER93_RS06325 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) BER93_RS06340 PF13276 BER93_RS06340 BER93_RS06340 PF13683 BER93_RS06340 BER93_RS06345 PF01527 Transposase BER93_RS06350 PF01609 Transposase DDE domain BER93_RS06350 PF05598 BER93_RS06350 BER93_RS06355 PF13489 Methyltransferase domain BER93_RS06360 PF03653 BER93_RS06360 BER93_RS06365 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BER93_RS06370 PF01336 OB-fold nucleic acid binding domain BER93_RS06370 PF02811 PHP domain BER93_RS06370 PF07733 Bacterial DNA polymerase III alpha subunit BER93_RS06370 PF14579 Helix-hairpin-helix motif BER93_RS06375 PF01351 Ribonuclease HII BER93_RS06380 PF02684 BER93_RS06380 BER93_RS06385 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_RS06385 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BER93_RS06390 PF07977 FabA-like domain BER93_RS06395 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_RS06395 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BER93_RS06405 PF01103 Surface antigen BER93_RS06405 PF07244 Surface antigen variable number repeat BER93_RS06410 PF02163 Peptidase family M50 BER93_RS06415 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BER93_RS06415 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal BER93_RS06415 PF13288 DXP reductoisomerase C-terminal domain BER93_RS06420 PF01148 Cytidylyltransferase family BER93_RS06425 PF01255 Putative undecaprenyl diphosphate synthase BER93_RS06430 PF01765 Ribosome recycling factor BER93_RS06435 PF00696 Amino acid kinase family BER93_RS06445 PF00889 Elongation factor TS BER93_RS06450 PF00318 Ribosomal protein S2 BER93_RS06455 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BER93_RS06465 PF05229 BER93_RS06465 BER93_RS06470 PF00577 Outer membrane usher protein BER93_RS06470 PF13953 PapC C-terminal domain BER93_RS06475 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BER93_RS06480 PF05229 BER93_RS06480 BER93_RS06485 PF00557 Metallopeptidase family M24 BER93_RS06490 PF01966 HD domain BER93_RS06490 PF08335 GlnD PII-uridylyltransferase BER93_RS06495 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_RS06495 PF14602 Hexapeptide repeat of succinyl-transferase BER93_RS06495 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BER93_RS06500 PF03960 ArsC family BER93_RS06505 PF01546 Peptidase family M20/M25/M40 BER93_RS06505 PF07687 Peptidase dimerisation domain BER93_RS06510 PF00733 Asparagine synthase BER93_RS06510 PF13537 Glutamine amidotransferase domain BER93_RS06515 PF13229 Right handed beta helix region BER93_RS06520 PF00593 TonB dependent receptor BER93_RS06520 PF07715 TonB-dependent Receptor Plug Domain BER93_RS06525 PF01804 Penicillin amidase BER93_RS06530 PF01609 Transposase DDE domain BER93_RS06535 PF00210 Ferritin-like domain BER93_RS06545 PF00521 DNA gyrase/topoisomerase IV, subunit A BER93_RS06545 PF03989 DNA gyrase C-terminal domain, beta-propeller BER93_RS06550 PF01047 MarR family BER93_RS06555 PF02321 Outer membrane efflux protein BER93_RS06560 PF00529 HlyD family secretion protein BER93_RS06560 PF16576 BER93_RS06560 BER93_RS06565 PF07690 Major Facilitator Superfamily BER93_RS06580 PF00854 POT family BER93_RS06585 PF01694 Rhomboid family BER93_RS06595 PF14542 GCN5-related N-acetyl-transferase BER93_RS06605 PF01047 MarR family BER93_RS06615 PF00255 Glutathione peroxidase BER93_RS06620 PF01609 Transposase DDE domain BER93_RS06620 PF13340 BER93_RS06620 BER93_RS06625 PF00175 Oxidoreductase NAD-binding domain BER93_RS06625 PF00970 Oxidoreductase FAD-binding domain BER93_RS06630 PF00005 ABC transporter BER93_RS06635 PF05681 BER93_RS06635 BER93_RS06635 PF05683 Fumarase C-terminus BER93_RS06640 PF00484 Carbonic anhydrase BER93_RS06650 PF02253 Phospholipase A1 BER93_RS06655 PF04306 BER93_RS06655 BER93_RS06660 PF00313 'Cold-shock' DNA-binding domain BER93_RS06665 PF05433 BER93_RS06665 BER93_RS06675 PF00899 ThiF family BER93_RS06680 PF01026 TatD related DNase BER93_RS06690 PF05433 BER93_RS06690 BER93_RS06700 PF00043 Glutathione S-transferase, C-terminal domain BER93_RS06700 PF02798 Glutathione S-transferase, N-terminal domain BER93_RS06705 PF00733 Asparagine synthase BER93_RS06705 PF13537 Glutamine amidotransferase domain BER93_RS06710 PF03358 NADPH-dependent FMN reductase BER93_RS06715 PF00772 DnaB-like helicase N terminal domain BER93_RS06715 PF03796 DnaB-like helicase C terminal domain BER93_RS06720 PF00875 DNA photolyase BER93_RS06720 PF03441 FAD binding domain of DNA photolyase BER93_RS06725 PF00691 OmpA family BER93_RS06725 PF13488 BER93_RS06725 BER93_RS06730 PF01609 Transposase DDE domain BER93_RS06735 PF00665 Integrase core domain BER93_RS06735 PF13276 BER93_RS06735 BER93_RS06740 PF01527 Transposase BER93_RS06760 PF06114 Domain of unknown function (DUF955) BER93_RS06760 PF09856 BER93_RS06760 BER93_RS06760 PF13560 Helix-turn-helix domain BER93_RS06765 PF00171 Aldehyde dehydrogenase family BER93_RS06770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_RS06770 PF02770 Acyl-CoA dehydrogenase, middle domain BER93_RS06770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_RS06775 PF00378 Enoyl-CoA hydratase/isomerase family BER93_RS06780 PF16113 BER93_RS06780 BER93_RS06785 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BER93_RS06785 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BER93_RS06790 PF01545 Cation efflux family BER93_RS06795 PF00378 Enoyl-CoA hydratase/isomerase family BER93_RS06795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BER93_RS06795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BER93_RS06800 PF04542 Sigma-70 region 2 BER93_RS06800 PF08281 Sigma-70, region 4 BER93_RS06805 PF03872 Anti sigma-E protein RseA, N-terminal domain BER93_RS06810 PF13180 PDZ domain BER93_RS06810 PF13365 Trypsin-like peptidase domain BER93_RS06815 PF01609 Transposase DDE domain BER93_RS06815 PF05598 BER93_RS06815 BER93_RS06820 PF01609 Transposase DDE domain BER93_RS06820 PF05598 BER93_RS06820 BER93_RS06825 PF01609 Transposase DDE domain BER93_RS06830 PF01527 Transposase BER93_RS06835 PF00665 Integrase core domain BER93_RS06835 PF13276 BER93_RS06835 BER93_RS06840 PF13936 Helix-turn-helix domain BER93_RS06845 PF01544 CorA-like Mg2+ transporter protein BER93_RS06850 PF13387 BER93_RS06850 BER93_RS06855 PF00571 CBS domain BER93_RS06855 PF03471 Transporter associated domain BER93_RS06865 PF02130 Uncharacterized protein family UPF0054 BER93_RS06870 PF02562 PhoH-like protein BER93_RS06875 PF00919 Uncharacterized protein family UPF0004 BER93_RS06875 PF01938 TRAM domain BER93_RS06875 PF04055 Radical SAM superfamily BER93_RS06885 PF01464 Transglycosylase SLT domain BER93_RS06890 PF00355 Rieske [2Fe-2S] domain BER93_RS06890 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BER93_RS06895 PF00032 Cytochrome b(C-terminal)/b6/petD BER93_RS06895 PF00033 Cytochrome b(N-terminal)/b6/petB BER93_RS06900 PF02167 Cytochrome C1 family BER93_RS06905 PF00043 Glutathione S-transferase, C-terminal domain BER93_RS06905 PF13417 Glutathione S-transferase, N-terminal domain BER93_RS06910 PF04386 Stringent starvation protein B BER93_RS06915 PF11743 BER93_RS06915 BER93_RS06920 PF00270 DEAD/DEAH box helicase BER93_RS06920 PF00271 Helicase conserved C-terminal domain BER93_RS06920 PF08494 BER93_RS06920 BER93_RS06925 PF02245 Methylpurine-DNA glycosylase (MPG) BER93_RS06940 PF00816 H-NS histone family BER93_RS06945 PF12244 BER93_RS06945 BER93_RS06950 PF01609 Transposase DDE domain BER93_RS06955 PF00570 HRDC domain BER93_RS06955 PF01612 3'-5' exonuclease BER93_RS06960 PF03781 Sulfatase-modifying factor enzyme 1 BER93_RS06975 PF00009 Elongation factor Tu GTP binding domain BER93_RS06975 PF00679 Elongation factor G C-terminus BER93_RS06975 PF03144 Elongation factor Tu domain 2 BER93_RS06975 PF06421 GTP-binding protein LepA C-terminus BER93_RS06980 PF00717 Peptidase S24-like BER93_RS06985 PF16137 BER93_RS06985 BER93_RS06990 PF00035 Double-stranded RNA binding motif BER93_RS06990 PF14622 Ribonuclease-III-like BER93_RS06995 PF01926 50S ribosome-binding GTPase BER93_RS06995 PF07650 KH domain BER93_RS07000 PF02565 Recombination protein O C terminal BER93_RS07000 PF11967 Recombination protein O N terminal BER93_RS07005 PF00072 Response regulator receiver domain BER93_RS07010 PF05958 tRNA (Uracil-5-)-methyltransferase BER93_RS07015 PF01928 CYTH domain BER93_RS07020 PF01593 Flavin containing amine oxidoreductase BER93_RS07020 PF13450 NAD(P)-binding Rossmann-like domain BER93_RS07025 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BER93_RS07030 PF00933 Glycosyl hydrolase family 3 N terminal domain BER93_RS07035 PF00156 Phosphoribosyl transferase domain BER93_RS07040 PF01048 Phosphorylase superfamily BER93_RS07045 PF00313 'Cold-shock' DNA-binding domain BER93_RS07050 PF00149 Calcineurin-like phosphoesterase BER93_RS07055 PF00270 DEAD/DEAH box helicase BER93_RS07055 PF00271 Helicase conserved C-terminal domain BER93_RS07055 PF08494 BER93_RS07055 BER93_RS07060 PF01068 ATP dependent DNA ligase domain BER93_RS07060 PF04675 DNA ligase N terminus BER93_RS07060 PF04679 ATP dependent DNA ligase C terminal region BER93_RS07085 PF04519 BER93_RS07085 BER93_RS07100 PF00108 Thiolase, N-terminal domain BER93_RS07100 PF02803 Thiolase, C-terminal domain BER93_RS07105 PF01609 Transposase DDE domain BER93_RS07105 PF05598 BER93_RS07105 BER93_RS07110 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BER93_RS07110 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BER93_RS07115 PF08238 Sel1 repeat BER93_RS07120 PF01863 Protein of unknown function DUF45 BER93_RS07130 PF07043 BER93_RS07130 BER93_RS07135 PF10982 Protein of unknown function (DUF2789) BER93_RS07140 PF05872 BER93_RS07140 BER93_RS07145 PF01464 Transglycosylase SLT domain BER93_RS07145 PF01476 LysM domain BER93_RS07160 PF01416 tRNA pseudouridine synthase BER93_RS07165 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BER93_RS07180 PF01609 Transposase DDE domain BER93_RS07180 PF05598 BER93_RS07180 BER93_RS07190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_RS07190 PF03466 LysR substrate binding domain BER93_RS07195 PF00291 Pyridoxal-phosphate dependent enzyme BER93_RS07200 PF00290 Tryptophan synthase alpha chain BER93_RS07205 PF01039 Carboxyl transferase domain BER93_RS07210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BER93_RS07210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BER93_RS07210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BER93_RS07210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BER93_RS07215 PF03171 2OG-Fe(II) oxygenase superfamily BER93_RS07215 PF14226 non-haem dioxygenase in morphine synthesis N-terminal BER93_RS07225 PF00563 EAL domain BER93_RS07225 PF00672 HAMP domain BER93_RS07225 PF00990 GGDEF domain BER93_RS07225 PF14827 Sensory domain of two-component sensor kinase BER93_RS07230 PF11231 BER93_RS07230 BER93_RS07235 PF01152 Bacterial-like globin BER93_RS07240 PF00106 short chain dehydrogenase BER93_RS07245 PF00121 Triosephosphate isomerase BER93_RS07250 PF03840 Preprotein translocase SecG subunit BER93_RS07260 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BER93_RS07265 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BER93_RS07270 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BER93_RS07275 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BER93_RS07280 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin BER93_RS07285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BER93_RS07285 PF10531 SLBB domain BER93_RS07285 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BER93_RS07290 PF00384 Molybdopterin oxidoreductase BER93_RS07290 PF01568 Molydopterin dinucleotide binding domain BER93_RS07290 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER93_RS07290 PF13510 2Fe-2S iron-sulfur cluster binding domain BER93_RS07295 PF00146 NADH dehydrogenase BER93_RS07300 PF12838 4Fe-4S dicluster domain BER93_RS07305 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BER93_RS07310 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BER93_RS07315 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_RS07315 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BER93_RS07320 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_RS07325 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_RS07335 PF02576 Uncharacterised BCR, YhbC family COG0779 BER93_RS07340 PF00575 S1 RNA binding domain BER93_RS07340 PF08529 NusA N-terminal domain BER93_RS07340 PF13184 NusA-like KH domain BER93_RS07340 PF14520 Helix-hairpin-helix domain BER93_RS07345 PF00009 Elongation factor Tu GTP binding domain BER93_RS07345 PF04760 Translation initiation factor IF-2, N-terminal region BER93_RS07345 PF08364 BER93_RS07345 BER93_RS07345 PF11987 Translation-initiation factor 2 BER93_RS07350 PF02033 Ribosome-binding factor A BER93_RS07355 PF01509 TruB family pseudouridylate synthase (N terminal domain) BER93_RS07355 PF09157 Pseudouridine synthase II TruB, C-terminal BER93_RS07355 PF16198 BER93_RS07355 BER93_RS07360 PF00312 Ribosomal protein S15 BER93_RS07365 PF00013 KH domain BER93_RS07365 PF00575 S1 RNA binding domain BER93_RS07365 PF01138 3' exoribonuclease family, domain 1 BER93_RS07365 PF03725 3' exoribonuclease family, domain 2 BER93_RS07365 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BER93_RS07370 PF13340 BER93_RS07370 BER93_RS07375 PF01609 Transposase DDE domain BER93_RS07385 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BER93_RS07385 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BER93_RS07390 PF03966 Trm112p-like protein BER93_RS07395 PF00731 AIR carboxylase BER93_RS07400 PF02222 ATP-grasp domain BER93_RS07405 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BER93_RS07405 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BER93_RS07410 PF00462 Glutaredoxin BER93_RS07415 PF00106 short chain dehydrogenase BER93_RS07420 PF01914 BER93_RS07420 BER93_RS07425 PF07715 TonB-dependent Receptor Plug Domain BER93_RS07425 PF13620 Carboxypeptidase regulatory-like domain BER93_RS07430 PF03641 Possible lysine decarboxylase BER93_RS07430 PF11892 Domain of unknown function (DUF3412) BER93_RS07430 PF14793 Domain of unknown function (DUF4478) BER93_RS07440 PF06580 BER93_RS07440 BER93_RS07445 PF16074 BER93_RS07445 BER93_RS07450 PF05567 Neisseria PilC beta-propeller domain BER93_RS07455 PF01609 Transposase DDE domain BER93_RS07455 PF05598 BER93_RS07455 BER93_RS07460 PF00072 Response regulator receiver domain BER93_RS07460 PF13487 HD domain BER93_RS07465 PF00072 Response regulator receiver domain BER93_RS07465 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS07465 PF01627 Hpt domain BER93_RS07465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS07465 PF03924 CHASE domain BER93_RS07465 PF13426 PAS domain BER93_RS07470 PF04286 BER93_RS07470 BER93_RS07475 PF13086 AAA domain BER93_RS07475 PF13087 AAA domain BER93_RS07475 PF13245 Part of AAA domain BER93_RS07485 PF07690 Major Facilitator Superfamily BER93_RS07490 PF02634 FdhD/NarQ family BER93_RS07495 PF00384 Molybdopterin oxidoreductase BER93_RS07495 PF01568 Molydopterin dinucleotide binding domain BER93_RS07510 PF01527 Transposase BER93_RS07515 PF00665 Integrase core domain BER93_RS07515 PF13276 BER93_RS07515 BER93_RS07520 PF00072 Response regulator receiver domain BER93_RS07520 PF00990 GGDEF domain BER93_RS07525 PF01266 FAD dependent oxidoreductase BER93_RS07530 PF00120 Glutamine synthetase, catalytic domain BER93_RS07535 PF00120 Glutamine synthetase, catalytic domain BER93_RS07540 PF13416 Bacterial extracellular solute-binding protein BER93_RS07545 PF13533 Biotin-lipoyl like BER93_RS07545 PF16576 BER93_RS07545 BER93_RS07550 PF07690 Major Facilitator Superfamily BER93_RS07555 PF02321 Outer membrane efflux protein BER93_RS07560 PF00005 ABC transporter BER93_RS07560 PF08402 TOBE domain BER93_RS07565 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS07570 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS07575 PF00171 Aldehyde dehydrogenase family BER93_RS07585 PF07536 BER93_RS07585 BER93_RS07585 PF08447 PAS fold BER93_RS07595 PF00873 AcrB/AcrD/AcrF family BER93_RS07600 PF16576 BER93_RS07600 BER93_RS07605 PF00440 Bacterial regulatory proteins, tetR family BER93_RS07610 PF05088 BER93_RS07610 BER93_RS07610 PF12466 BER93_RS07610 BER93_RS07635 PF05819 BER93_RS07635 BER93_RS07650 PF05016 Plasmid stabilisation system protein BER93_RS07655 PF03693 Uncharacterised protein family (UPF0156) BER93_RS07665 PF04796 BER93_RS07665 BER93_RS07670 PF01609 Transposase DDE domain BER93_RS07690 PF01609 Transposase DDE domain BER93_RS07690 PF05598 BER93_RS07690 BER93_RS07695 PF01527 Transposase BER93_RS07705 PF00665 Integrase core domain BER93_RS07705 PF13333 BER93_RS07705 BER93_RS07715 PF00271 Helicase conserved C-terminal domain BER93_RS07715 PF02151 UvrB/uvrC motif BER93_RS07715 PF04851 Type III restriction enzyme, res subunit BER93_RS07715 PF12344 Ultra-violet resistance protein B BER93_RS07730 PF10671 Toxin co-regulated pilus biosynthesis protein Q BER93_RS07735 PF04335 VirB8 protein BER93_RS07745 PF03743 Bacterial conjugation TrbI-like protein BER93_RS07750 PF00437 Type II/IV secretion system protein BER93_RS07755 PF01464 Transglycosylase SLT domain BER93_RS07760 PF04956 BER93_RS07760 BER93_RS07765 PF05101 BER93_RS07765 BER93_RS07770 PF03135 BER93_RS07770 BER93_RS07780 PF04610 BER93_RS07780 BER93_RS07785 PF05598 BER93_RS07785 BER93_RS07790 PF01609 Transposase DDE domain BER93_RS07790 PF13340 BER93_RS07790 BER93_RS07795 PF01609 Transposase DDE domain BER93_RS07805 PF01471 Putative peptidoglycan binding domain BER93_RS07820 PF04610 BER93_RS07820 BER93_RS07830 PF01471 Putative peptidoglycan binding domain BER93_RS07835 PF03135 BER93_RS07835 BER93_RS07860 PF04610 BER93_RS07860 BER93_RS07865 PF07007 Protein of unknown function (DUF1311) BER93_RS07870 PF01471 Putative peptidoglycan binding domain BER93_RS07875 PF01609 Transposase DDE domain BER93_RS07875 PF05598 BER93_RS07875 BER93_RS07885 PF06114 Domain of unknown function (DUF955) BER93_RS07900 PF00589 Phage integrase family BER93_RS07920 PF01381 Helix-turn-helix BER93_RS07940 PF13910 BER93_RS07940 BER93_RS07945 PF00589 Phage integrase family BER93_RS07960 PF01668 SmpB protein BER93_RS07965 PF03364 Polyketide cyclase / dehydrase and lipid transport BER93_RS07970 PF03658 RnfH family Ubiquitin BER93_RS07975 PF04355 SmpA / OmlA family BER93_RS07980 PF01475 Ferric uptake regulator family BER93_RS07985 PF02463 RecF/RecN/SMC N terminal domain BER93_RS07990 PF01628 HrcA protein C terminal domain BER93_RS07990 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BER93_RS07995 PF01025 GrpE BER93_RS08000 PF00012 Hsp70 protein BER93_RS08005 PF00226 DnaJ domain BER93_RS08005 PF00684 DnaJ central domain BER93_RS08005 PF01556 DnaJ C terminal domain BER93_RS08010 PF08543 Phosphomethylpyrimidine kinase BER93_RS08015 PF01842 ACT domain BER93_RS08015 PF02153 Prephenate dehydrogenase BER93_RS08025 PF02321 Outer membrane efflux protein BER93_RS08030 PF13437 HlyD family secretion protein BER93_RS08030 PF13533 Biotin-lipoyl like BER93_RS08050 PF00005 ABC transporter BER93_RS08050 PF00664 ABC transporter transmembrane region BER93_RS08055 PF01205 Uncharacterized protein family UPF0029 BER93_RS08055 PF09186 Domain of unknown function (DUF1949) BER93_RS08060 PF03641 Possible lysine decarboxylase BER93_RS08065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_RS08065 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_RS08070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BER93_RS08070 PF00364 Biotin-requiring enzyme BER93_RS08070 PF02817 e3 binding domain BER93_RS08075 PF00676 Dehydrogenase E1 component BER93_RS08075 PF02779 Transketolase, pyrimidine binding domain BER93_RS08075 PF16078 BER93_RS08075 BER93_RS08075 PF16870 BER93_RS08075 BER93_RS08080 PF00583 Acetyltransferase (GNAT) family BER93_RS08085 PF08007 Cupin superfamily protein BER93_RS08090 PF00206 Lyase BER93_RS08090 PF08328 Adenylosuccinate lyase C-terminal BER93_RS08095 PF00206 Lyase BER93_RS08095 PF10415 Fumarase C C-terminus BER93_RS08100 PF01609 Transposase DDE domain BER93_RS08100 PF05598 BER93_RS08100 BER93_RS08105 PF01527 Transposase BER93_RS08115 PF00665 Integrase core domain BER93_RS08120 PF01609 Transposase DDE domain BER93_RS08130 PF13340 BER93_RS08130 BER93_RS08145 PF00005 ABC transporter BER93_RS08150 PF00392 Bacterial regulatory proteins, gntR family BER93_RS08160 PF00255 Glutathione peroxidase BER93_RS08165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER93_RS08165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BER93_RS08170 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BER93_RS08170 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BER93_RS08170 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BER93_RS08175 PF04102 SlyX BER93_RS08180 PF09831 BER93_RS08180 BER93_RS08185 PF13557 BER93_RS08185 BER93_RS08190 PF00356 Bacterial regulatory proteins, lacI family BER93_RS08190 PF13377 Periplasmic binding protein-like domain BER93_RS08195 PF07690 Major Facilitator Superfamily BER93_RS08200 PF00294 pfkB family carbohydrate kinase BER93_RS08205 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) BER93_RS08210 PF00809 Pterin binding enzyme BER93_RS08210 PF02310 B12 binding domain BER93_RS08210 PF02607 B12 binding domain BER93_RS08210 PF02965 Vitamin B12 dependent methionine synthase, activation domain BER93_RS08215 PF02574 Homocysteine S-methyltransferase BER93_RS08220 PF01022 Bacterial regulatory protein, arsR family BER93_RS08220 PF08241 Methyltransferase domain BER93_RS08225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_RS08225 PF02770 Acyl-CoA dehydrogenase, middle domain BER93_RS08225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_RS08230 PF13472 GDSL-like Lipase/Acylhydrolase family BER93_RS08240 PF00575 S1 RNA binding domain BER93_RS08240 PF00773 RNB domain BER93_RS08240 PF08206 Ribonuclease B OB domain BER93_RS08245 PF00588 SpoU rRNA Methylase family BER93_RS08245 PF08032 RNA 2'-O ribose methyltransferase substrate binding BER93_RS08250 PF00990 GGDEF domain BER93_RS08255 PF00929 Exonuclease BER93_RS08260 PF01895 PhoU domain BER93_RS08265 PF00005 ABC transporter BER93_RS08270 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS08275 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS08280 PF12849 PBP superfamily domain BER93_RS08290 PF12849 PBP superfamily domain BER93_RS08305 PF01609 Transposase DDE domain BER93_RS08305 PF13340 BER93_RS08305 BER93_RS08310 PF00484 Carbonic anhydrase BER93_RS08315 PF00916 BER93_RS08315 BER93_RS08320 PF00633 Helix-hairpin-helix motif BER93_RS08320 PF00730 HhH-GPD superfamily base excision DNA repair protein BER93_RS08335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER93_RS08335 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BER93_RS08340 PF00293 NUDIX domain BER93_RS08340 PF06945 BER93_RS08340 BER93_RS08345 PF00581 Rhodanese-like domain BER93_RS08350 PF07920 Protein of unknown function (DUF1684) BER93_RS08355 PF01510 N-acetylmuramoyl-L-alanine amidase BER93_RS08360 PF03473 MOSC domain BER93_RS08365 PF12697 Alpha/beta hydrolase family BER93_RS08370 PF00583 Acetyltransferase (GNAT) family BER93_RS08375 PF13649 Methyltransferase domain BER93_RS08380 PF01170 Putative RNA methylase family UPF0020 BER93_RS08380 PF02926 THUMP domain BER93_RS08380 PF10672 S-adenosylmethionine-dependent methyltransferase BER93_RS08385 PF01513 ATP-NAD kinase BER93_RS08390 PF06189 BER93_RS08390 BER93_RS08395 PF01609 Transposase DDE domain BER93_RS08395 PF05598 BER93_RS08395 BER93_RS08400 PF11159 BER93_RS08400 BER93_RS08410 PF00929 Exonuclease BER93_RS08410 PF08411 Exonuclease C-terminal BER93_RS08415 PF01494 FAD binding domain BER93_RS08420 PF00266 Aminotransferase class-V BER93_RS08425 PF12805 BER93_RS08425 BER93_RS08425 PF13515 BER93_RS08425 BER93_RS08430 PF06052 3-hydroxyanthranilic acid dioxygenase BER93_RS08435 PF00484 Carbonic anhydrase BER93_RS08440 PF04299 Putative FMN-binding domain BER93_RS08460 PF00152 tRNA synthetases class II (D, K and N) BER93_RS08460 PF01336 OB-fold nucleic acid binding domain BER93_RS08465 PF01521 Iron-sulphur cluster biosynthesis BER93_RS08470 PF01250 Ribosomal protein S6 BER93_RS08475 PF01084 Ribosomal protein S18 BER93_RS08480 PF01281 Ribosomal protein L9, N-terminal domain BER93_RS08480 PF03948 Ribosomal protein L9, C-terminal domain BER93_RS08485 PF02463 RecF/RecN/SMC N terminal domain BER93_RS08490 PF04354 ZipA, C-terminal FtsZ-binding domain BER93_RS08495 PF00533 BRCA1 C Terminus (BRCT) domain BER93_RS08495 PF01653 NAD-dependent DNA ligase adenylation domain BER93_RS08495 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BER93_RS08495 PF03120 NAD-dependent DNA ligase OB-fold domain BER93_RS08495 PF12826 Helix-hairpin-helix motif BER93_RS08500 PF00152 tRNA synthetases class II (D, K and N) BER93_RS08505 PF11218 BER93_RS08505 BER93_RS08515 PF01008 Initiation factor 2 subunit family BER93_RS08520 PF00521 DNA gyrase/topoisomerase IV, subunit A BER93_RS08520 PF03989 DNA gyrase C-terminal domain, beta-propeller BER93_RS08535 PF01175 Urocanase BER93_RS08540 PF05013 N-formylglutamate amidohydrolase BER93_RS08545 PF00221 Aromatic amino acid lyase BER93_RS08550 PF01979 Amidohydrolase family BER93_RS08555 PF01979 Amidohydrolase family BER93_RS08560 PF00392 Bacterial regulatory proteins, gntR family BER93_RS08560 PF07702 UTRA domain BER93_RS08565 PF05597 BER93_RS08565 BER93_RS08570 PF09650 BER93_RS08570 BER93_RS08575 PF16697 BER93_RS08575 BER93_RS08580 PF01794 BER93_RS08580 BER93_RS08585 PF02666 BER93_RS08585 BER93_RS08590 PF02630 SCO1/SenC BER93_RS08595 PF05175 Methyltransferase small domain BER93_RS08605 PF01264 Chorismate synthase BER93_RS08610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_RS08610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BER93_RS08615 PF01118 Semialdehyde dehydrogenase, NAD binding domain BER93_RS08615 PF02774 Semialdehyde dehydrogenase, dimerisation domain BER93_RS08625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS08625 PF00672 HAMP domain BER93_RS08625 PF12729 BER93_RS08625 BER93_RS08630 PF06745 KaiC BER93_RS08635 PF00072 Response regulator receiver domain BER93_RS08635 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS08635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS08635 PF08448 PAS fold BER93_RS08640 PF01527 Transposase BER93_RS08660 PF03918 Cytochrome C biogenesis protein BER93_RS08665 PF01578 BER93_RS08665 BER93_RS08670 PF01578 BER93_RS08670 BER93_RS08675 PF00082 Subtilase family BER93_RS08680 PF13490 Putative zinc-finger BER93_RS08685 PF04542 Sigma-70 region 2 BER93_RS08685 PF04545 Sigma-70, region 4 BER93_RS08710 PF00083 Sugar (and other) transporter BER93_RS08715 PF00296 Luciferase-like monooxygenase BER93_RS08720 PF06055 BER93_RS08720 BER93_RS08725 PF00571 CBS domain BER93_RS08725 PF01595 BER93_RS08725 BER93_RS08725 PF03471 Transporter associated domain BER93_RS08730 PF01865 Protein of unknown function DUF47 BER93_RS08735 PF01384 BER93_RS08735 BER93_RS08740 PF02698 DUF218 domain BER93_RS08745 PF00450 Serine carboxypeptidase BER93_RS08750 PF00204 DNA gyrase B BER93_RS08750 PF00986 DNA gyrase B subunit, carboxyl terminus BER93_RS08750 PF01751 Toprim domain BER93_RS08750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS08760 PF00117 Glutamine amidotransferase class-I BER93_RS08760 PF06418 CTP synthase N-terminus BER93_RS08765 PF00793 DAHP synthetase I family BER93_RS08770 PF00113 Enolase, C-terminal TIM barrel domain BER93_RS08770 PF03952 Enolase, N-terminal domain BER93_RS08775 PF04977 Septum formation initiator BER93_RS08780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BER93_RS08785 PF02542 YgbB family BER93_RS08790 PF01142 tRNA pseudouridine synthase D (TruD) BER93_RS08795 PF01713 Smr domain BER93_RS08800 PF01975 Survival protein SurE BER93_RS08805 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BER93_RS08815 PF01476 LysM domain BER93_RS08815 PF01551 Peptidase family M23 BER93_RS08840 PF01609 Transposase DDE domain BER93_RS08850 PF01609 Transposase DDE domain BER93_RS08850 PF05598 BER93_RS08850 BER93_RS08855 PF00561 alpha/beta hydrolase fold BER93_RS08860 PF01609 Transposase DDE domain BER93_RS08860 PF05598 BER93_RS08860 BER93_RS08865 PF13432 Tetratricopeptide repeat BER93_RS08870 PF03918 Cytochrome C biogenesis protein BER93_RS08875 PF08534 Redoxin BER93_RS08880 PF01578 BER93_RS08880 BER93_RS08880 PF16327 BER93_RS08880 BER93_RS08885 PF03100 CcmE BER93_RS08890 PF04995 BER93_RS08890 BER93_RS08895 PF01578 BER93_RS08895 BER93_RS08900 PF03379 BER93_RS08900 BER93_RS08905 PF00005 ABC transporter BER93_RS08910 PF00155 Aminotransferase class I and II BER93_RS08915 PF00795 Carbon-nitrogen hydrolase BER93_RS08920 PF05096 Glutamine cyclotransferase BER93_RS08930 PF00849 RNA pseudouridylate synthase BER93_RS08930 PF01479 S4 domain BER93_RS08935 PF04079 Putative transcriptional regulators (Ypuh-like) BER93_RS08940 PF02616 ScpA/B protein BER93_RS08945 PF03795 YCII-related domain BER93_RS08950 PF01722 BolA-like protein BER93_RS08955 PF00356 Bacterial regulatory proteins, lacI family BER93_RS08955 PF13377 Periplasmic binding protein-like domain BER93_RS08960 PF13620 Carboxypeptidase regulatory-like domain BER93_RS08965 PF10091 Putative glucoamylase BER93_RS08970 PF13416 Bacterial extracellular solute-binding protein BER93_RS08975 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS08980 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS08985 PF00754 F5/8 type C domain BER93_RS08995 PF01609 Transposase DDE domain BER93_RS08995 PF05598 BER93_RS08995 BER93_RS09000 PF01963 BER93_RS09000 BER93_RS09010 PF00795 Carbon-nitrogen hydrolase BER93_RS09015 PF04371 Porphyromonas-type peptidyl-arginine deiminase BER93_RS09025 PF02224 Cytidylate kinase BER93_RS09030 PF00575 S1 RNA binding domain BER93_RS09035 PF00216 Bacterial DNA-binding protein BER93_RS09040 PF06305 BER93_RS09040 BER93_RS09045 PF13432 Tetratricopeptide repeat BER93_RS09050 PF00953 Glycosyl transferase family 4 BER93_RS09055 PF02719 Polysaccharide biosynthesis protein BER93_RS09055 PF13727 CoA-binding domain BER93_RS09060 PF00483 Nucleotidyl transferase BER93_RS09065 PF00999 Sodium/hydrogen exchanger family BER93_RS09070 PF01527 Transposase BER93_RS09075 PF13276 BER93_RS09075 BER93_RS09085 PF01609 Transposase DDE domain BER93_RS09095 PF06844 Protein of unknown function (DUF1244) BER93_RS09100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BER93_RS09100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BER93_RS09105 PF00478 IMP dehydrogenase / GMP reductase domain BER93_RS09105 PF00571 CBS domain BER93_RS09110 PF00117 Glutamine amidotransferase class-I BER93_RS09110 PF00958 GMP synthase C terminal domain BER93_RS09110 PF02540 NAD synthase BER93_RS09115 PF00589 Phage integrase family BER93_RS09115 PF13356 Domain of unknown function (DUF4102) BER93_RS09120 PF05930 Prophage CP4-57 regulatory protein (AlpA) BER93_RS09125 PF01609 Transposase DDE domain BER93_RS09125 PF05598 BER93_RS09125 BER93_RS09140 PF13481 AAA domain BER93_RS09145 PF06504 BER93_RS09145 BER93_RS09155 PF03869 Arc-like DNA binding domain BER93_RS09160 PF01850 PIN domain BER93_RS09165 PF07996 Type IV secretion system proteins BER93_RS09170 PF01527 Transposase BER93_RS09175 PF01609 Transposase DDE domain BER93_RS09175 PF05598 BER93_RS09175 BER93_RS09180 PF00665 Integrase core domain BER93_RS09180 PF13276 BER93_RS09180 BER93_RS09195 PF01609 Transposase DDE domain BER93_RS09200 PF01609 Transposase DDE domain BER93_RS09200 PF13340 BER93_RS09200 BER93_RS09205 PF01609 Transposase DDE domain BER93_RS09205 PF05598 BER93_RS09205 BER93_RS09210 PF03129 Anticodon binding domain BER93_RS09210 PF13393 Histidyl-tRNA synthetase BER93_RS09215 PF01371 Trp repressor protein BER93_RS09220 PF01634 ATP phosphoribosyltransferase BER93_RS09220 PF08029 HisG, C-terminal domain BER93_RS09225 PF00815 Histidinol dehydrogenase BER93_RS09230 PF00155 Aminotransferase class I and II BER93_RS09235 PF00475 Imidazoleglycerol-phosphate dehydratase BER93_RS09235 PF13242 HAD-hyrolase-like BER93_RS09240 PF00117 Glutamine amidotransferase class-I BER93_RS09245 PF00977 Histidine biosynthesis protein BER93_RS09250 PF00977 Histidine biosynthesis protein BER93_RS09255 PF01502 Phosphoribosyl-AMP cyclohydrolase BER93_RS09255 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BER93_RS09260 PF00149 Calcineurin-like phosphoesterase BER93_RS09260 PF16370 BER93_RS09260 BER93_RS09260 PF16371 BER93_RS09260 BER93_RS09270 PF01609 Transposase DDE domain BER93_RS09275 PF01650 Peptidase C13 family BER93_RS09285 PF03079 ARD/ARD' family BER93_RS09290 PF00596 Class II Aldolase and Adducin N-terminal domain BER93_RS09295 PF13520 Amino acid permease BER93_RS09300 PF13520 Amino acid permease BER93_RS09305 PF00293 NUDIX domain BER93_RS09310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_RS09310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BER93_RS09315 PF01565 FAD binding domain BER93_RS09315 PF02913 FAD linked oxidases, C-terminal domain BER93_RS09320 PF09498 BER93_RS09320 BER93_RS09325 PF13387 BER93_RS09325 BER93_RS09330 PF01132 Elongation factor P (EF-P) OB domain BER93_RS09330 PF08207 Elongation factor P (EF-P) KOW-like domain BER93_RS09330 PF09285 Elongation factor P, C-terminal BER93_RS09335 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS09340 PF00682 HMGL-like BER93_RS09345 PF00378 Enoyl-CoA hydratase/isomerase family BER93_RS09350 PF04023 FeoA domain BER93_RS09355 PF02421 Ferrous iron transport protein B BER93_RS09355 PF07664 BER93_RS09355 BER93_RS09355 PF07670 Nucleoside recognition BER93_RS09370 PF01113 Dihydrodipicolinate reductase, N-terminus BER93_RS09370 PF05173 Dihydrodipicolinate reductase, C-terminus BER93_RS09375 PF00117 Glutamine amidotransferase class-I BER93_RS09375 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BER93_RS09380 PF13304 AAA domain BER93_RS09385 PF01850 PIN domain BER93_RS09390 PF02142 MGS-like domain BER93_RS09390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BER93_RS09390 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BER93_RS09395 PF01272 Transcription elongation factor, GreA/GreB, C-term BER93_RS09395 PF03449 Transcription elongation factor, N-terminal BER93_RS09405 PF01368 DHH family BER93_RS09405 PF02272 DHHA1 domain BER93_RS09410 PF00472 RF-1 domain BER93_RS09410 PF03462 PCRF domain BER93_RS09415 PF00152 tRNA synthetases class II (D, K and N) BER93_RS09415 PF01336 OB-fold nucleic acid binding domain BER93_RS09420 PF00072 Response regulator receiver domain BER93_RS09420 PF01966 HD domain BER93_RS09430 PF00072 Response regulator receiver domain BER93_RS09430 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS09430 PF01627 Hpt domain BER93_RS09430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS09435 PF00378 Enoyl-CoA hydratase/isomerase family BER93_RS09440 PF00501 AMP-binding enzyme BER93_RS09440 PF13193 AMP-binding enzyme C-terminal domain BER93_RS09450 PF00330 Aconitase family (aconitate hydratase) BER93_RS09450 PF00694 Aconitase C-terminal domain BER93_RS09455 PF04014 Antidote-toxin recognition MazE BER93_RS09460 PF01850 PIN domain BER93_RS09465 PF00330 Aconitase family (aconitate hydratase) BER93_RS09465 PF06434 Aconitate hydratase 2 N-terminus BER93_RS09465 PF11791 Aconitate B N-terminal domain BER93_RS09470 PF00561 alpha/beta hydrolase fold BER93_RS09475 PF00563 EAL domain BER93_RS09475 PF00990 GGDEF domain BER93_RS09475 PF13185 GAF domain BER93_RS09475 PF13426 PAS domain BER93_RS09480 PF00072 Response regulator receiver domain BER93_RS09480 PF01339 CheB methylesterase BER93_RS09485 PF03975 CheD chemotactic sensory transduction BER93_RS09490 PF01739 CheR methyltransferase, SAM binding domain BER93_RS09490 PF03705 CheR methyltransferase, all-alpha domain BER93_RS09500 PF01584 CheW-like domain BER93_RS09510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS09510 PF00672 HAMP domain BER93_RS09510 PF12729 BER93_RS09510 BER93_RS09520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS09520 PF00672 HAMP domain BER93_RS09520 PF12729 BER93_RS09520 BER93_RS09525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS09525 PF00672 HAMP domain BER93_RS09525 PF12729 BER93_RS09525 BER93_RS09535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS09535 PF00672 HAMP domain BER93_RS09535 PF12729 BER93_RS09535 BER93_RS09545 PF13557 BER93_RS09545 BER93_RS09560 PF01584 CheW-like domain BER93_RS09560 PF01627 Hpt domain BER93_RS09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS09560 PF02895 Signal transducing histidine kinase, homodimeric domain BER93_RS09565 PF00072 Response regulator receiver domain BER93_RS09570 PF13466 STAS domain BER93_RS09575 PF01584 CheW-like domain BER93_RS09580 PF13614 AAA domain BER93_RS09585 PF00691 OmpA family BER93_RS09585 PF13677 BER93_RS09585 BER93_RS09590 PF01618 BER93_RS09590 BER93_RS09595 PF05598 BER93_RS09595 BER93_RS09615 PF02486 BER93_RS09615 BER93_RS09620 PF02303 Helix-destabilising protein BER93_RS09635 PF10734 BER93_RS09635 BER93_RS09640 PF05707 Zonular occludens toxin (Zot) BER93_RS09655 PF02486 BER93_RS09655 BER93_RS09680 PF10734 BER93_RS09680 BER93_RS09685 PF05707 Zonular occludens toxin (Zot) BER93_RS09695 PF12375 BER93_RS09695 BER93_RS09705 PF01106 NifU-like domain BER93_RS09710 PF01329 Pterin 4 alpha carbinolamine dehydratase BER93_RS09715 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_RS09720 PF01527 Transposase BER93_RS09725 PF00665 Integrase core domain BER93_RS09725 PF13276 BER93_RS09725 BER93_RS09730 PF13333 BER93_RS09730 BER93_RS09740 PF01609 Transposase DDE domain BER93_RS09750 PF00849 RNA pseudouridylate synthase BER93_RS09750 PF01479 S4 domain BER93_RS09755 PF00575 S1 RNA binding domain BER93_RS09755 PF10150 Ribonuclease E/G family BER93_RS09760 PF00072 Response regulator receiver domain BER93_RS09760 PF00196 Bacterial regulatory proteins, luxR family BER93_RS09765 PF00581 Rhodanese-like domain BER93_RS09775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER93_RS09785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BER93_RS09785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BER93_RS09785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BER93_RS09795 PF01609 Transposase DDE domain BER93_RS09795 PF05598 BER93_RS09795 BER93_RS09805 PF01527 Transposase BER93_RS09815 PF00665 Integrase core domain BER93_RS09835 PF11745 BER93_RS09835 BER93_RS09840 PF13503 BER93_RS09840 BER93_RS09845 PF05954 Phage late control gene D protein (GPD) BER93_RS09845 PF10106 BER93_RS09845 BER93_RS09845 PF13296 BER93_RS09845 BER93_RS09855 PF00004 ATPase family associated with various cellular activities (AAA) BER93_RS09855 PF02861 Clp amino terminal domain BER93_RS09855 PF07724 AAA domain (Cdc48 subfamily) BER93_RS09855 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_RS09860 PF06996 BER93_RS09860 BER93_RS09865 PF05947 BER93_RS09865 BER93_RS09870 PF04965 Gene 25-like lysozyme BER93_RS09875 PF05638 Protein of unknown function (DUF796) BER93_RS09880 PF05943 BER93_RS09880 BER93_RS09885 PF05591 BER93_RS09885 BER93_RS09895 PF12790 Type VI secretion lipoprotein BER93_RS09900 PF05936 BER93_RS09900 BER93_RS09905 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) BER93_RS09910 PF10106 BER93_RS09910 BER93_RS09910 PF13296 BER93_RS09910 BER93_RS09920 PF15584 BER93_RS09920 BER93_RS09920 PF15602 BER93_RS09920 BER93_RS09930 PF15584 BER93_RS09930 BER93_RS09930 PF15602 BER93_RS09930 BER93_RS09935 PF10106 BER93_RS09935 BER93_RS09935 PF13296 BER93_RS09935 BER93_RS09945 PF15584 BER93_RS09945 BER93_RS09945 PF15602 BER93_RS09945 BER93_RS09955 PF15584 BER93_RS09955 BER93_RS09955 PF15602 BER93_RS09955 BER93_RS09965 PF15584 BER93_RS09965 BER93_RS09965 PF15602 BER93_RS09965 BER93_RS09975 PF10106 BER93_RS09975 BER93_RS09975 PF13296 BER93_RS09975 BER93_RS09980 PF01527 Transposase BER93_RS09985 PF01609 Transposase DDE domain BER93_RS09985 PF13340 BER93_RS09985 BER93_RS10000 PF12951 BER93_RS10000 BER93_RS10000 PF13018 BER93_RS10000 BER93_RS10010 PF10685 BER93_RS10010 BER93_RS10015 PF05974 Domain of unknown function (DUF892) BER93_RS10030 PF01609 Transposase DDE domain BER93_RS10030 PF05598 BER93_RS10030 BER93_RS10040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BER93_RS10040 PF10414 Sirohaem synthase dimerisation region BER93_RS10040 PF13241 Putative NAD(P)-binding BER93_RS10040 PF14824 Sirohaem biosynthesis protein central BER93_RS10050 PF12804 MobA-like NTP transferase domain BER93_RS10055 PF00994 Probable molybdopterin binding domain BER93_RS10055 PF03453 MoeA N-terminal region (domain I and II) BER93_RS10055 PF03454 MoeA C-terminal region (domain IV) BER93_RS10065 PF06884 BER93_RS10065 BER93_RS10070 PF00593 TonB dependent receptor BER93_RS10070 PF07715 TonB-dependent Receptor Plug Domain BER93_RS10075 PF00581 Rhodanese-like domain BER93_RS10075 PF00899 ThiF family BER93_RS10080 PF00994 Probable molybdopterin binding domain BER93_RS10080 PF03453 MoeA N-terminal region (domain I and II) BER93_RS10080 PF03454 MoeA C-terminal region (domain IV) BER93_RS10085 PF01926 50S ribosome-binding GTPase BER93_RS10085 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BER93_RS10090 PF13360 PQQ-like domain BER93_RS10095 PF09976 Tetratricopeptide repeat BER93_RS10100 PF13413 Helix-turn-helix domain BER93_RS10100 PF13464 BER93_RS10100 BER93_RS10105 PF13181 Tetratricopeptide repeat BER93_RS10105 PF13432 Tetratricopeptide repeat BER93_RS10110 PF04055 Radical SAM superfamily BER93_RS10115 PF00334 Nucleoside diphosphate kinase BER93_RS10120 PF00440 Bacterial regulatory proteins, tetR family BER93_RS10125 PF00378 Enoyl-CoA hydratase/isomerase family BER93_RS10125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BER93_RS10125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BER93_RS10130 PF00108 Thiolase, N-terminal domain BER93_RS10130 PF02803 Thiolase, C-terminal domain BER93_RS10135 PF00654 Voltage gated chloride channel BER93_RS10140 PF01609 Transposase DDE domain BER93_RS10140 PF05598 BER93_RS10140 BER93_RS10145 PF00004 ATPase family associated with various cellular activities (AAA) BER93_RS10145 PF12002 MgsA AAA+ ATPase C terminal BER93_RS10145 PF16193 BER93_RS10145 BER93_RS10150 PF03548 Outer membrane lipoprotein carrier protein LolA BER93_RS10155 PF01841 Transglutaminase-like superfamily BER93_RS10155 PF12969 Domain of Unknown Function with PDB structure (DUF3857) BER93_RS10160 PF01580 FtsK/SpoIIIE family BER93_RS10160 PF09397 Ftsk gamma domain BER93_RS10160 PF13491 BER93_RS10160 BER93_RS10165 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_RS10170 PF04339 BER93_RS10170 BER93_RS10175 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BER93_RS10180 PF01176 Translation initiation factor 1A / IF-1 BER93_RS10185 PF00004 ATPase family associated with various cellular activities (AAA) BER93_RS10185 PF02861 Clp amino terminal domain BER93_RS10185 PF07724 AAA domain (Cdc48 subfamily) BER93_RS10185 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_RS10190 PF02617 ATP-dependent Clp protease adaptor protein ClpS BER93_RS10195 PF00293 NUDIX domain BER93_RS10200 PF03054 tRNA methyl transferase BER93_RS10205 PF04356 Protein of unknown function (DUF489) BER93_RS10210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS10230 PF07730 Histidine kinase BER93_RS10230 PF08448 PAS fold BER93_RS10230 PF13426 PAS domain BER93_RS10235 PF00072 Response regulator receiver domain BER93_RS10235 PF00563 EAL domain BER93_RS10235 PF00990 GGDEF domain BER93_RS10240 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS10240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS10250 PF04316 Anti-sigma-28 factor, FlgM BER93_RS10255 PF13144 SAF-like BER93_RS10260 PF00072 Response regulator receiver domain BER93_RS10260 PF01584 CheW-like domain BER93_RS10265 PF00460 Flagella basal body rod protein BER93_RS10270 PF00460 Flagella basal body rod protein BER93_RS10270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_RS10275 PF03963 BER93_RS10275 BER93_RS10275 PF13860 FlgD Ig-like domain BER93_RS10275 PF13861 FlgD Tudor-like domain BER93_RS10280 PF00460 Flagella basal body rod protein BER93_RS10280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_RS10280 PF07559 Flagellar basal body protein FlaE BER93_RS10285 PF00460 Flagella basal body rod protein BER93_RS10285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_RS10290 PF00460 Flagella basal body rod protein BER93_RS10290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_RS10295 PF02107 BER93_RS10295 BER93_RS10300 PF02119 BER93_RS10300 BER93_RS10305 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BER93_RS10305 PF10135 BER93_RS10305 BER93_RS10310 PF00460 Flagella basal body rod protein BER93_RS10310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_RS10315 PF00669 Bacterial flagellin N-terminal helical region BER93_RS10315 PF00700 Bacterial flagellin C-terminal helical region BER93_RS10320 PF00669 Bacterial flagellin N-terminal helical region BER93_RS10320 PF00700 Bacterial flagellin C-terminal helical region BER93_RS10320 PF07196 Flagellin hook IN motif BER93_RS10325 PF02465 BER93_RS10325 BER93_RS10325 PF07195 BER93_RS10325 BER93_RS10325 PF07196 Flagellin hook IN motif BER93_RS10330 PF02561 Flagellar protein FliS BER93_RS10340 PF16823 BER93_RS10340 BER93_RS10345 PF00072 Response regulator receiver domain BER93_RS10345 PF00196 Bacterial regulatory proteins, luxR family BER93_RS10350 PF00309 BER93_RS10350 BER93_RS10350 PF04552 Sigma-54, DNA binding domain BER93_RS10350 PF04963 Sigma-54 factor, core binding domain BER93_RS10355 PF00072 Response regulator receiver domain BER93_RS10360 PF00158 Sigma-54 interaction domain BER93_RS10360 PF02954 Bacterial regulatory protein, Fis family BER93_RS10360 PF06490 BER93_RS10360 BER93_RS10365 PF01609 Transposase DDE domain BER93_RS10370 PF00535 Glycosyl transferase family 2 BER93_RS10380 PF02049 BER93_RS10380 BER93_RS10385 PF01514 Secretory protein of YscJ/FliF family BER93_RS10385 PF08345 BER93_RS10385 BER93_RS10390 PF01706 FliG C-terminal domain BER93_RS10390 PF14841 FliG middle domain BER93_RS10390 PF14842 FliG N-terminal domain BER93_RS10395 PF02108 BER93_RS10395 BER93_RS10400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_RS10405 PF02050 Flagellar FliJ protein BER93_RS10410 PF02120 Flagellar hook-length control protein FliK BER93_RS10415 PF03748 BER93_RS10415 BER93_RS10420 PF01052 Surface presentation of antigens (SPOA) BER93_RS10420 PF02154 Flagellar motor switch protein FliM BER93_RS10425 PF01052 Surface presentation of antigens (SPOA) BER93_RS10430 PF04347 BER93_RS10430 BER93_RS10435 PF00813 BER93_RS10435 BER93_RS10440 PF01313 BER93_RS10440 BER93_RS10445 PF01311 BER93_RS10445 BER93_RS10455 PF00990 GGDEF domain BER93_RS10460 PF00990 GGDEF domain BER93_RS10460 PF07495 Y_Y_Y domain BER93_RS10465 PF01312 FlhB HrpN YscU SpaS Family BER93_RS10470 PF00771 FHIPEP family BER93_RS10475 PF00448 SRP54-type protein, GTPase domain BER93_RS10480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_RS10485 PF04539 Sigma-70 region 3 BER93_RS10485 PF04542 Sigma-70 region 2 BER93_RS10485 PF04545 Sigma-70, region 4 BER93_RS10490 PF00072 Response regulator receiver domain BER93_RS10495 PF04344 Chemotaxis phosphatase, CheZ BER93_RS10500 PF01584 CheW-like domain BER93_RS10500 PF01627 Hpt domain BER93_RS10500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS10500 PF02895 Signal transducing histidine kinase, homodimeric domain BER93_RS10510 PF01609 Transposase DDE domain BER93_RS10510 PF13340 BER93_RS10510 BER93_RS10520 PF01609 Transposase DDE domain BER93_RS10520 PF13340 BER93_RS10520 BER93_RS10555 PF01609 Transposase DDE domain BER93_RS10565 PF00082 Subtilase family BER93_RS10565 PF03797 Autotransporter beta-domain BER93_RS10565 PF12951 BER93_RS10565 BER93_RS10570 PF00873 AcrB/AcrD/AcrF family BER93_RS10580 PF01527 Transposase BER93_RS10585 PF01609 Transposase DDE domain BER93_RS10595 PF01609 Transposase DDE domain BER93_RS10600 PF13645 BER93_RS10600 BER93_RS10605 PF00291 Pyridoxal-phosphate dependent enzyme BER93_RS10605 PF14821 Threonine synthase N terminus BER93_RS10615 PF07519 Tannase and feruloyl esterase BER93_RS10620 PF01609 Transposase DDE domain BER93_RS10620 PF05598 BER93_RS10620 BER93_RS10625 PF00288 GHMP kinases N terminal domain BER93_RS10625 PF08544 GHMP kinases C terminal BER93_RS10630 PF00696 Amino acid kinase family BER93_RS10630 PF00742 Homoserine dehydrogenase BER93_RS10630 PF03447 Homoserine dehydrogenase, NAD binding domain BER93_RS10630 PF13840 ACT domain BER93_RS10635 PF03073 TspO/MBR family BER93_RS10640 PF01527 Transposase BER93_RS10650 PF01609 Transposase DDE domain BER93_RS10650 PF05598 BER93_RS10650 BER93_RS10655 PF05876 BER93_RS10655 BER93_RS10670 PF11784 BER93_RS10670 BER93_RS10670 PF13086 AAA domain BER93_RS10670 PF13087 AAA domain BER93_RS10675 PF01609 Transposase DDE domain BER93_RS10675 PF13340 BER93_RS10675 BER93_RS10680 PF13245 Part of AAA domain BER93_RS10685 PF00665 Integrase core domain BER93_RS10685 PF13276 BER93_RS10685 BER93_RS10690 PF01527 Transposase BER93_RS10695 PF00171 Aldehyde dehydrogenase family BER93_RS10700 PF13828 BER93_RS10700 BER93_RS10705 PF08241 Methyltransferase domain BER93_RS10710 PF01180 Dihydroorotate dehydrogenase BER93_RS10715 PF01565 FAD binding domain BER93_RS10715 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BER93_RS10720 PF00892 EamA-like transporter family BER93_RS10725 PF01569 PAP2 superfamily BER93_RS10730 PF04551 GcpE protein BER93_RS10735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS10740 PF00072 Response regulator receiver domain BER93_RS10740 PF02954 Bacterial regulatory protein, Fis family BER93_RS10750 PF00563 EAL domain BER93_RS10750 PF00990 GGDEF domain BER93_RS10750 PF01590 GAF domain BER93_RS10770 PF01609 Transposase DDE domain BER93_RS10770 PF05598 BER93_RS10770 BER93_RS10790 PF00474 Sodium:solute symporter family BER93_RS10795 PF00933 Glycosyl hydrolase family 3 N terminal domain BER93_RS10795 PF01915 Glycosyl hydrolase family 3 C-terminal domain BER93_RS10800 PF05787 Bacterial protein of unknown function (DUF839) BER93_RS10805 PF02534 Type IV secretory system Conjugative DNA transfer BER93_RS10830 PF01471 Putative peptidoglycan binding domain BER93_RS10840 PF00342 Phosphoglucose isomerase BER93_RS10845 PF02261 Aspartate decarboxylase BER93_RS10850 PF02569 Pantoate-beta-alanine ligase BER93_RS10855 PF02548 Ketopantoate hydroxymethyltransferase BER93_RS10860 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BER93_RS10865 PF01743 Poly A polymerase head domain BER93_RS10865 PF12626 Polymerase A arginine-rich C-terminus BER93_RS10865 PF12627 Probable RNA and SrmB- binding site of polymerase A BER93_RS10875 PF02649 Type I GTP cyclohydrolase folE2 BER93_RS10880 PF00083 Sugar (and other) transporter BER93_RS10890 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BER93_RS10890 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BER93_RS10895 PF14498 Glycosyl hydrolase family 65, N-terminal domain BER93_RS10900 PF01055 Glycosyl hydrolases family 31 BER93_RS10900 PF07691 PA14 domain BER93_RS10900 PF16338 BER93_RS10900 BER93_RS10900 PF17137 BER93_RS10900 BER93_RS10905 PF02449 Beta-galactosidase BER93_RS10910 PF03629 Domain of unknown function (DUF303) BER93_RS10910 PF13364 Beta-galactosidase jelly roll domain BER93_RS10915 PF00593 TonB dependent receptor BER93_RS10915 PF07715 TonB-dependent Receptor Plug Domain BER93_RS10920 PF05598 BER93_RS10920 BER93_RS10935 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) BER93_RS10945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_RS10945 PF03466 LysR substrate binding domain BER93_RS10950 PF01081 KDPG and KHG aldolase BER93_RS10955 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BER93_RS10955 PF13378 Enolase C-terminal domain-like BER93_RS10960 PF08450 SMP-30/Gluconolaconase/LRE-like region BER93_RS10965 PF05035 2-keto-3-deoxy-galactonokinase BER93_RS10970 PF00037 4Fe-4S binding domain BER93_RS10970 PF11953 Domain of unknown function (DUF3470) BER93_RS10980 PF00701 Dihydrodipicolinate synthetase family BER93_RS10985 PF13740 ACT domain BER93_RS10990 PF06877 Regulator of ribonuclease activity B BER93_RS10995 PF00578 AhpC/TSA family BER93_RS11000 PF02562 PhoH-like protein BER93_RS11000 PF13638 PIN domain BER93_RS11010 PF08543 Phosphomethylpyrimidine kinase BER93_RS11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_RS11025 PF03466 LysR substrate binding domain BER93_RS11030 PF02678 Pirin BER93_RS11050 PF02599 Global regulator protein family BER93_RS11055 PF01411 tRNA synthetases class II (A) BER93_RS11055 PF02272 DHHA1 domain BER93_RS11055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BER93_RS11060 PF02631 RecX family BER93_RS11065 PF00154 recA bacterial DNA recombination protein BER93_RS11070 PF00717 Peptidase S24-like BER93_RS11070 PF01726 LexA DNA binding domain BER93_RS11075 PF03109 BER93_RS11075 BER93_RS11085 PF00593 TonB dependent receptor BER93_RS11100 PF13229 Right handed beta helix region BER93_RS11100 PF16380 BER93_RS11100 BER93_RS11125 PF01527 Transposase BER93_RS11130 PF13683 BER93_RS11130 BER93_RS11135 PF13276 BER93_RS11135 BER93_RS11150 PF11740 BER93_RS11150 BER93_RS11155 PF00589 Phage integrase family BER93_RS11175 PF07715 TonB-dependent Receptor Plug Domain BER93_RS11180 PF02464 Competence-damaged protein BER93_RS11190 PF01926 50S ribosome-binding GTPase BER93_RS11190 PF13167 BER93_RS11190 BER93_RS11190 PF16360 BER93_RS11190 BER93_RS11200 PF01715 IPP transferase BER93_RS11205 PF00809 Pterin binding enzyme BER93_RS11210 PF00004 ATPase family associated with various cellular activities (AAA) BER93_RS11210 PF01434 Peptidase family M41 BER93_RS11210 PF06480 FtsH Extracellular BER93_RS11215 PF01728 FtsJ-like methyltransferase BER93_RS11220 PF01985 CRS1 / YhbY (CRM) domain BER93_RS11225 PF04430 Protein of unknown function (DUF498/DUF598) BER93_RS11230 PF01609 Transposase DDE domain BER93_RS11230 PF13340 BER93_RS11230 BER93_RS11235 PF01609 Transposase DDE domain BER93_RS11245 PF01527 Transposase BER93_RS11285 PF11745 BER93_RS11285 BER93_RS11295 PF11745 BER93_RS11295 BER93_RS11300 PF11745 BER93_RS11300 BER93_RS11305 PF13503 BER93_RS11305 BER93_RS11310 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) BER93_RS11315 PF11745 BER93_RS11315 BER93_RS11320 PF11745 BER93_RS11320 BER93_RS11325 PF13503 BER93_RS11325 BER93_RS11330 PF05954 Phage late control gene D protein (GPD) BER93_RS11330 PF10106 BER93_RS11330 BER93_RS11330 PF13296 BER93_RS11330 BER93_RS11335 PF03781 Sulfatase-modifying factor enzyme 1 BER93_RS11345 PF05954 Phage late control gene D protein (GPD) BER93_RS11345 PF10106 BER93_RS11345 BER93_RS11345 PF13296 BER93_RS11345 BER93_RS11350 PF05360 BER93_RS11350 BER93_RS11355 PF06812 BER93_RS11355 BER93_RS11360 PF00691 OmpA family BER93_RS11365 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) BER93_RS11370 PF06744 BER93_RS11370 BER93_RS11370 PF06761 BER93_RS11370 BER93_RS11370 PF14331 BER93_RS11370 BER93_RS11380 PF05488 PAAR motif BER93_RS11385 PF13539 D-alanyl-D-alanine carboxypeptidase BER93_RS11395 PF05593 BER93_RS11395 BER93_RS11405 PF05593 BER93_RS11405 BER93_RS11410 PF08845 BER93_RS11410 BER93_RS11435 PF05593 BER93_RS11435 BER93_RS11445 PF05954 Phage late control gene D protein (GPD) BER93_RS11450 PF13340 BER93_RS11450 BER93_RS11455 PF01609 Transposase DDE domain BER93_RS11460 PF01609 Transposase DDE domain BER93_RS11460 PF05598 BER93_RS11460 BER93_RS11465 PF01609 Transposase DDE domain BER93_RS11465 PF13340 BER93_RS11465 BER93_RS11480 PF01609 Transposase DDE domain BER93_RS11500 PF01066 CDP-alcohol phosphatidyltransferase BER93_RS11505 PF01541 GIY-YIG catalytic domain BER93_RS11505 PF02151 UvrB/uvrC motif BER93_RS11505 PF08459 UvrC Helix-hairpin-helix N-terminal BER93_RS11510 PF01436 NHL repeat BER93_RS11520 PF02348 Cytidylyltransferase BER93_RS11525 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BER93_RS11530 PF00005 ABC transporter BER93_RS11530 PF00664 ABC transporter transmembrane region BER93_RS11535 PF02472 Biopolymer transport protein ExbD/TolR BER93_RS11540 PF01618 BER93_RS11540 BER93_RS11545 PF00753 Metallo-beta-lactamase superfamily BER93_RS11545 PF03772 BER93_RS11545 BER93_RS11545 PF13567 BER93_RS11545 BER93_RS11550 PF01370 NAD dependent epimerase/dehydratase family BER93_RS11555 PF00005 ABC transporter BER93_RS11560 PF02687 BER93_RS11560 BER93_RS11560 PF12704 MacB-like periplasmic core domain BER93_RS11570 PF03937 Flavinator of succinate dehydrogenase BER93_RS11575 PF13085 2Fe-2S iron-sulfur cluster binding domain BER93_RS11575 PF13534 4Fe-4S dicluster domain BER93_RS11585 PF00890 FAD binding domain BER93_RS11585 PF02910 Fumarate reductase flavoprotein C-term BER93_RS11590 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BER93_RS11595 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BER93_RS11600 PF01571 Aminomethyltransferase folate-binding domain BER93_RS11600 PF08669 Glycine cleavage T-protein C-terminal barrel domain BER93_RS11605 PF00005 ABC transporter BER93_RS11605 PF08402 TOBE domain BER93_RS11610 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BER93_RS11610 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BER93_RS11615 PF02685 Glucokinase BER93_RS11620 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BER93_RS11625 PF00920 Dehydratase family BER93_RS11630 PF01081 KDPG and KHG aldolase BER93_RS11640 PF00034 Cytochrome c BER93_RS11645 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BER93_RS11660 PF01609 Transposase DDE domain BER93_RS11660 PF05598 BER93_RS11660 BER93_RS11680 PF00072 Response regulator receiver domain BER93_RS11685 PF00072 Response regulator receiver domain BER93_RS11685 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS11685 PF01590 GAF domain BER93_RS11685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS11685 PF08447 PAS fold BER93_RS11685 PF08448 PAS fold BER93_RS11685 PF13185 GAF domain BER93_RS11690 PF00575 S1 RNA binding domain BER93_RS11690 PF09371 Tex-like protein N-terminal domain BER93_RS11690 PF12836 Helix-hairpin-helix motif BER93_RS11690 PF16921 BER93_RS11690 BER93_RS11710 PF04024 BER93_RS11710 BER93_RS11715 PF00561 alpha/beta hydrolase fold BER93_RS11720 PF09712 BER93_RS11720 BER93_RS11725 PF01066 CDP-alcohol phosphatidyltransferase BER93_RS11730 PF00293 NUDIX domain BER93_RS11735 PF06853 BER93_RS11735 BER93_RS11740 PF03618 BER93_RS11740 BER93_RS11745 PF00391 PEP-utilising enzyme, mobile domain BER93_RS11745 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BER93_RS11745 PF02896 PEP-utilising enzyme, TIM barrel domain BER93_RS11750 PF00924 Mechanosensitive ion channel BER93_RS11755 PF00929 Exonuclease BER93_RS11760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BER93_RS11765 PF01325 Iron dependent repressor, N-terminal DNA binding domain BER93_RS11765 PF02742 Iron dependent repressor, metal binding and dimerisation domain BER93_RS11770 PF01566 BER93_RS11770 BER93_RS11775 PF00561 alpha/beta hydrolase fold BER93_RS11780 PF01609 Transposase DDE domain BER93_RS11780 PF05598 BER93_RS11780 BER93_RS11815 PF03389 MobA/MobL family BER93_RS11820 PF01527 Transposase BER93_RS11825 PF13276 BER93_RS11825 BER93_RS11825 PF13683 BER93_RS11825 BER93_RS11835 PF13751 BER93_RS11835 BER93_RS11840 PF00665 Integrase core domain BER93_RS11840 PF13276 BER93_RS11840 BER93_RS11845 PF01527 Transposase BER93_RS11850 PF13195 BER93_RS11850 BER93_RS11855 PF01609 Transposase DDE domain BER93_RS11855 PF05598 BER93_RS11855 BER93_RS11865 PF00171 Aldehyde dehydrogenase family BER93_RS11870 PF00696 Amino acid kinase family BER93_RS11870 PF01472 PUA domain BER93_RS11875 PF03795 YCII-related domain BER93_RS11880 PF07883 Cupin domain BER93_RS11885 PF00206 Lyase BER93_RS11890 PF01118 Semialdehyde dehydrogenase, NAD binding domain BER93_RS11895 PF13302 Acetyltransferase (GNAT) domain BER93_RS11900 PF00696 Amino acid kinase family BER93_RS11900 PF04768 Protein of unknown function (DUF619) BER93_RS11905 PF01546 Peptidase family M20/M25/M40 BER93_RS11905 PF07687 Peptidase dimerisation domain BER93_RS11910 PF00764 Arginosuccinate synthase BER93_RS11915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BER93_RS11915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BER93_RS11925 PF01406 tRNA synthetases class I (C) catalytic domain BER93_RS11925 PF09190 DALR domain BER93_RS11930 PF02657 Fe-S metabolism associated domain BER93_RS11935 PF05977 Transmembrane secretion effector BER93_RS11940 PF01258 Prokaryotic dksA/traR C4-type zinc finger BER93_RS11945 PF01809 BER93_RS11945 BER93_RS11950 PF01979 Amidohydrolase family BER93_RS11955 PF01551 Peptidase family M23 BER93_RS11960 PF01609 Transposase DDE domain BER93_RS11960 PF05598 BER93_RS11960 BER93_RS11965 PF16242 BER93_RS11965 BER93_RS11980 PF00544 Pectate lyase BER93_RS11985 PF00295 Glycosyl hydrolases family 28 BER93_RS11995 PF13419 Haloacid dehalogenase-like hydrolase BER93_RS12000 PF13489 Methyltransferase domain BER93_RS12005 PF01979 Amidohydrolase family BER93_RS12015 PF01132 Elongation factor P (EF-P) OB domain BER93_RS12015 PF08207 Elongation factor P (EF-P) KOW-like domain BER93_RS12015 PF09285 Elongation factor P, C-terminal BER93_RS12020 PF04055 Radical SAM superfamily BER93_RS12020 PF13394 4Fe-4S single cluster domain BER93_RS12025 PF00588 SpoU rRNA Methylase family BER93_RS12030 PF00459 Inositol monophosphatase family BER93_RS12035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BER93_RS12035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BER93_RS12040 PF00545 ribonuclease BER93_RS12045 PF01337 Barstar (barnase inhibitor) BER93_RS12050 PF00005 ABC transporter BER93_RS12050 PF12848 ABC transporter BER93_RS12050 PF16326 BER93_RS12050 BER93_RS12055 PF00270 DEAD/DEAH box helicase BER93_RS12055 PF00271 Helicase conserved C-terminal domain BER93_RS12055 PF03880 DbpA RNA binding domain BER93_RS12060 PF00156 Phosphoribosyl transferase domain BER93_RS12065 PF02696 BER93_RS12065 BER93_RS12070 PF07859 alpha/beta hydrolase fold BER93_RS12075 PF00043 Glutathione S-transferase, C-terminal domain BER93_RS12075 PF02798 Glutathione S-transferase, N-terminal domain BER93_RS12080 PF00313 'Cold-shock' DNA-binding domain BER93_RS12090 PF07152 YaeQ protein BER93_RS12095 PF03486 HI0933-like protein BER93_RS12100 PF00563 EAL domain BER93_RS12100 PF00990 GGDEF domain BER93_RS12100 PF13188 PAS domain BER93_RS12105 PF01435 Peptidase family M48 BER93_RS12110 PF00749 tRNA synthetases class I (E and Q), catalytic domain BER93_RS12115 PF00106 short chain dehydrogenase BER93_RS12120 PF05233 BER93_RS12120 BER93_RS12120 PF07879 BER93_RS12120 BER93_RS12125 PF01963 BER93_RS12125 BER93_RS12130 PF07920 Protein of unknown function (DUF1684) BER93_RS12135 PF01119 DNA mismatch repair protein, C-terminal domain BER93_RS12135 PF08676 MutL C terminal dimerisation domain BER93_RS12135 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS12140 PF01520 N-acetylmuramoyl-L-alanine amidase BER93_RS12140 PF11741 AMIN domain BER93_RS12145 PF02367 Uncharacterised P-loop hydrolase UPF0079 BER93_RS12150 PF01256 Carbohydrate kinase BER93_RS12150 PF03853 YjeF-related protein N-terminus BER93_RS12155 PF08331 BER93_RS12155 BER93_RS12155 PF13484 BER93_RS12155 BER93_RS12160 PF02601 BER93_RS12160 BER93_RS12160 PF13742 BER93_RS12160 BER93_RS12175 PF04367 BER93_RS12175 BER93_RS12180 PF02592 BER93_RS12180 BER93_RS12190 PF02311 AraC-like ligand binding domain BER93_RS12195 PF05960 Bacterial protein of unknown function (DUF885) BER93_RS12200 PF02574 Homocysteine S-methyltransferase BER93_RS12205 PF00324 Amino acid permease BER93_RS12210 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) BER93_RS12215 PF01588 Putative tRNA binding domain BER93_RS12215 PF09334 tRNA synthetases class I (M) BER93_RS12220 PF12710 haloacid dehalogenase-like hydrolase BER93_RS12225 PF04060 Putative Fe-S cluster BER93_RS12225 PF14697 4Fe-4S dicluster domain BER93_RS12240 PF04542 Sigma-70 region 2 BER93_RS12240 PF08281 Sigma-70, region 4 BER93_RS12245 PF10099 BER93_RS12245 BER93_RS12250 PF00487 BER93_RS12250 BER93_RS12255 PF13450 NAD(P)-binding Rossmann-like domain BER93_RS12260 PF07103 BER93_RS12260 BER93_RS12265 PF02353 Mycolic acid cyclopropane synthetase BER93_RS12270 PF11086 BER93_RS12270 BER93_RS12275 PF06966 BER93_RS12275 BER93_RS12280 PF02353 Mycolic acid cyclopropane synthetase BER93_RS12285 PF01042 Endoribonuclease L-PSP BER93_RS12295 PF03706 BER93_RS12295 BER93_RS12295 PF09924 Uncharacterized conserved protein (DUF2156) BER93_RS12300 PF06057 Bacterial virulence protein (VirJ) BER93_RS12305 PF09791 BER93_RS12305 BER93_RS12315 PF01609 Transposase DDE domain BER93_RS12315 PF05598 BER93_RS12315 BER93_RS12320 PF02834 LigT like Phosphoesterase BER93_RS12325 PF09537 Domain of unknown function (DUF2383) BER93_RS12330 PF07690 Major Facilitator Superfamily BER93_RS12335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BER93_RS12340 PF03831 PhnA protein BER93_RS12345 PF01609 Transposase DDE domain BER93_RS12345 PF13340 BER93_RS12345 BER93_RS12350 PF01545 Cation efflux family BER93_RS12360 PF06723 MreB/Mbl protein BER93_RS12375 PF01272 Transcription elongation factor, GreA/GreB, C-term BER93_RS12375 PF03449 Transcription elongation factor, N-terminal BER93_RS12380 PF01609 Transposase DDE domain BER93_RS12380 PF13340 BER93_RS12380 BER93_RS12390 PF00919 Uncharacterized protein family UPF0004 BER93_RS12390 PF04055 Radical SAM superfamily BER93_RS12405 PF01738 Dienelactone hydrolase family BER93_RS12410 PF01230 HIT domain BER93_RS12415 PF00692 dUTPase BER93_RS12420 PF10609 ParA/MinD ATPase like BER93_RS12425 PF07715 TonB-dependent Receptor Plug Domain BER93_RS12425 PF13620 Carboxypeptidase regulatory-like domain BER93_RS12430 PF01593 Flavin containing amine oxidoreductase BER93_RS12435 PF01431 Peptidase family M13 BER93_RS12435 PF05649 Peptidase family M13 BER93_RS12440 PF01431 Peptidase family M13 BER93_RS12440 PF05649 Peptidase family M13 BER93_RS12445 PF01694 Rhomboid family BER93_RS12455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_RS12455 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_RS12460 PF01266 FAD dependent oxidoreductase BER93_RS12465 PF04235 BER93_RS12465 BER93_RS12470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER93_RS12475 PF00877 NlpC/P60 family BER93_RS12480 PF00877 NlpC/P60 family BER93_RS12485 PF03061 Thioesterase superfamily BER93_RS12490 PF01527 Transposase BER93_RS12495 PF00665 Integrase core domain BER93_RS12495 PF13276 BER93_RS12495 BER93_RS12500 PF05598 BER93_RS12500 BER93_RS12505 PF01609 Transposase DDE domain BER93_RS12505 PF05598 BER93_RS12505 BER93_RS12515 PF01609 Transposase DDE domain BER93_RS12530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_RS12530 PF03466 LysR substrate binding domain BER93_RS12535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BER93_RS12535 PF02403 Seryl-tRNA synthetase N-terminal domain BER93_RS12540 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_RS12545 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_RS12550 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BER93_RS12555 PF00800 Prephenate dehydratase BER93_RS12555 PF01817 Chorismate mutase type II BER93_RS12555 PF01842 ACT domain BER93_RS12560 PF00266 Aminotransferase class-V BER93_RS12565 PF00174 Oxidoreductase molybdopterin binding domain BER93_RS12570 PF00356 Bacterial regulatory proteins, lacI family BER93_RS12570 PF13377 Periplasmic binding protein-like domain BER93_RS12575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BER93_RS12575 PF00381 PTS HPr component phosphorylation site BER93_RS12575 PF00391 PEP-utilising enzyme, mobile domain BER93_RS12575 PF02896 PEP-utilising enzyme, TIM barrel domain BER93_RS12575 PF05524 PEP-utilising enzyme, N-terminal BER93_RS12580 PF00294 pfkB family carbohydrate kinase BER93_RS12585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BER93_RS12590 PF04966 Carbohydrate-selective porin, OprB family BER93_RS12595 PF02355 Protein export membrane protein BER93_RS12595 PF07549 SecD/SecF GG Motif BER93_RS12600 PF02355 Protein export membrane protein BER93_RS12600 PF07549 SecD/SecF GG Motif BER93_RS12600 PF13721 SecD export protein N-terminal TM region BER93_RS12605 PF02699 Preprotein translocase subunit BER93_RS12610 PF01702 Queuine tRNA-ribosyltransferase BER93_RS12615 PF02547 Queuosine biosynthesis protein BER93_RS12620 PF01037 AsnC family BER93_RS12620 PF13412 Winged helix-turn-helix DNA-binding BER93_RS12625 PF00202 Aminotransferase class-III BER93_RS12630 PF04488 Glycosyltransferase sugar-binding region containing DXD motif BER93_RS12640 PF14681 Uracil phosphoribosyltransferase BER93_RS12645 PF13340 BER93_RS12645 BER93_RS12650 PF01609 Transposase DDE domain BER93_RS12655 PF00759 Glycosyl hydrolase family 9 BER93_RS12655 PF02927 N-terminal ig-like domain of cellulase BER93_RS12660 PF01019 Gamma-glutamyltranspeptidase BER93_RS12665 PF00037 4Fe-4S binding domain BER93_RS12675 PF01467 Cytidylyltransferase BER93_RS12680 PF03602 Conserved hypothetical protein 95 BER93_RS12685 PF00183 Hsp90 protein BER93_RS12685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS12690 PF12762 BER93_RS12690 BER93_RS12695 PF06850 BER93_RS12695 BER93_RS12705 PF13372 Alginate export BER93_RS12710 PF01609 Transposase DDE domain BER93_RS12710 PF05598 BER93_RS12710 BER93_RS12715 PF00665 Integrase core domain BER93_RS12725 PF00375 Sodium:dicarboxylate symporter family BER93_RS12730 PF00245 Alkaline phosphatase BER93_RS12735 PF01171 PP-loop family BER93_RS12735 PF09179 TilS substrate binding domain BER93_RS12735 PF11734 TilS substrate C-terminal domain BER93_RS12740 PF02609 Exonuclease VII small subunit BER93_RS12745 PF00348 Polyprenyl synthetase BER93_RS12755 PF09685 BER93_RS12755 BER93_RS12760 PF01523 Putative modulator of DNA gyrase BER93_RS12765 PF04751 Protein of unknown function (DUF615) BER93_RS12770 PF01523 Putative modulator of DNA gyrase BER93_RS12780 PF13116 BER93_RS12780 BER93_RS12780 PF13502 BER93_RS12780 BER93_RS12785 PF10150 Ribonuclease E/G family BER93_RS12790 PF02545 Maf-like protein BER93_RS12795 PF04402 Protein of unknown function (DUF541) BER93_RS12800 PF02590 Predicted SPOUT methyltransferase BER93_RS12805 PF01527 Transposase BER93_RS12815 PF01527 Transposase BER93_RS12825 PF02410 Oligomerisation domain BER93_RS12830 PF01467 Cytidylyltransferase BER93_RS12835 PF06144 DNA polymerase III, delta subunit BER93_RS12840 PF04390 Lipopolysaccharide-assembly BER93_RS12845 PF00133 tRNA synthetases class I (I, L, M and V) BER93_RS12845 PF08264 Anticodon-binding domain of tRNA BER93_RS12845 PF13603 Leucyl-tRNA synthetase, Domain 2 BER93_RS12850 PF06197 BER93_RS12850 BER93_RS12855 PF00085 Thioredoxin BER93_RS12855 PF14559 Tetratricopeptide repeat BER93_RS12855 PF14561 Tetratricopeptide repeat BER93_RS12880 PF01464 Transglycosylase SLT domain BER93_RS12890 PF00263 BER93_RS12890 BER93_RS12890 PF03958 Bacterial type II/III secretion system short domain BER93_RS12895 PF01311 BER93_RS12895 BER93_RS12900 PF09486 BER93_RS12900 BER93_RS12905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_RS12905 PF02874 ATP synthase alpha/beta family, beta-barrel domain BER93_RS12910 PF02108 BER93_RS12910 BER93_RS12915 PF09502 BER93_RS12915 BER93_RS12920 PF01514 Secretory protein of YscJ/FliF family BER93_RS12925 PF09487 BER93_RS12925 BER93_RS12930 PF09613 BER93_RS12930 BER93_RS12935 PF01312 FlhB HrpN YscU SpaS Family BER93_RS12940 PF00771 FHIPEP family BER93_RS12945 PF09483 BER93_RS12945 BER93_RS12950 PF01052 Surface presentation of antigens (SPOA) BER93_RS12955 PF00813 BER93_RS12955 BER93_RS12960 PF01313 BER93_RS12960 BER93_RS12985 PF05932 Tir chaperone protein (CesT) family BER93_RS12990 PF03211 Pectate lyase BER93_RS13015 PF04070 BER93_RS13015 BER93_RS13020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BER93_RS13035 PF05960 Bacterial protein of unknown function (DUF885) BER93_RS13040 PF01609 Transposase DDE domain BER93_RS13050 PF00005 ABC transporter BER93_RS13050 PF00664 ABC transporter transmembrane region BER93_RS13060 PF00999 Sodium/hydrogen exchanger family BER93_RS13065 PF11954 BER93_RS13065 BER93_RS13070 PF01904 Protein of unknown function DUF72 BER93_RS13075 PF00892 EamA-like transporter family BER93_RS13080 PF00990 GGDEF domain BER93_RS13080 PF01590 GAF domain BER93_RS13085 PF00849 RNA pseudouridylate synthase BER93_RS13085 PF01479 S4 domain BER93_RS13095 PF00563 EAL domain BER93_RS13095 PF00990 GGDEF domain BER93_RS13095 PF08447 PAS fold BER93_RS13100 PF00270 DEAD/DEAH box helicase BER93_RS13100 PF00271 Helicase conserved C-terminal domain BER93_RS13100 PF03880 DbpA RNA binding domain BER93_RS13110 PF13275 S4 domain BER93_RS13125 PF01124 MAPEG family BER93_RS13130 PF13211 BER93_RS13130 BER93_RS13145 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BER93_RS13145 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BER93_RS13150 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase BER93_RS13155 PF03203 BER93_RS13155 BER93_RS13160 PF00593 TonB dependent receptor BER93_RS13160 PF07715 TonB-dependent Receptor Plug Domain BER93_RS13170 PF00037 4Fe-4S binding domain BER93_RS13170 PF00384 Molybdopterin oxidoreductase BER93_RS13170 PF01568 Molydopterin dinucleotide binding domain BER93_RS13170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BER93_RS13170 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER93_RS13170 PF13510 2Fe-2S iron-sulfur cluster binding domain BER93_RS13180 PF00082 Subtilase family BER93_RS13180 PF01483 Proprotein convertase P-domain BER93_RS13205 PF00150 Cellulase (glycosyl hydrolase family 5) BER93_RS13210 PF05598 BER93_RS13210 BER93_RS13215 PF01475 Ferric uptake regulator family BER93_RS13220 PF00749 tRNA synthetases class I (E and Q), catalytic domain BER93_RS13225 PF12275 BER93_RS13225 BER93_RS13245 PF00112 Papain family cysteine protease BER93_RS13250 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ BER93_RS13255 PF00583 Acetyltransferase (GNAT) family BER93_RS13260 PF00270 DEAD/DEAH box helicase BER93_RS13260 PF00271 Helicase conserved C-terminal domain BER93_RS13260 PF02559 CarD-like/TRCF domain BER93_RS13260 PF03461 TRCF domain BER93_RS13265 PF00488 MutS domain V BER93_RS13265 PF01624 MutS domain I BER93_RS13265 PF05188 MutS domain II BER93_RS13265 PF05190 MutS family domain IV BER93_RS13265 PF05192 MutS domain III BER93_RS13270 PF00141 Peroxidase BER93_RS13280 PF01609 Transposase DDE domain BER93_RS13285 PF01527 Transposase BER93_RS13305 PF00300 Histidine phosphatase superfamily (branch 1) BER93_RS13310 PF04493 Endonuclease V BER93_RS13340 PF02554 BER93_RS13340 BER93_RS13340 PF13722 BER93_RS13340 BER93_RS13345 PF04328 BER93_RS13345 BER93_RS13350 PF13419 Haloacid dehalogenase-like hydrolase BER93_RS13355 PF05684 BER93_RS13355 BER93_RS13365 PF12804 MobA-like NTP transferase domain BER93_RS13370 PF02625 XdhC and CoxI family BER93_RS13370 PF13478 XdhC Rossmann domain BER93_RS13375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BER93_RS13380 PF00990 GGDEF domain BER93_RS13380 PF02743 Cache domain BER93_RS13385 PF00436 Single-strand binding protein family BER93_RS13395 PF00348 Polyprenyl synthetase BER93_RS13400 PF01738 Dienelactone hydrolase family BER93_RS13405 PF02875 Mur ligase family, glutamate ligase domain BER93_RS13405 PF08245 Mur ligase middle domain BER93_RS13420 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BER93_RS13420 PF00696 Amino acid kinase family BER93_RS13420 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BER93_RS13430 PF02567 Phenazine biosynthesis-like protein BER93_RS13435 PF05433 BER93_RS13435 BER93_RS13440 PF02566 OsmC-like protein BER93_RS13445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BER93_RS13445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BER93_RS13450 PF03652 Uncharacterised protein family (UPF0081) BER93_RS13455 PF02622 Uncharacterized ACR, COG1678 BER93_RS13465 PF03352 Methyladenine glycosylase BER93_RS13480 PF00437 Type II/IV secretion system protein BER93_RS13485 PF00437 Type II/IV secretion system protein BER93_RS13490 PF01168 Alanine racemase, N-terminal domain BER93_RS13495 PF03807 NADP oxidoreductase coenzyme F420-dependent BER93_RS13495 PF14748 Pyrroline-5-carboxylate reductase dimerisation BER93_RS13500 PF00216 Bacterial DNA-binding protein BER93_RS13510 PF12977 Domain of Unknown Function with PDB structure (DUF3861) BER93_RS13515 PF07273 Protein of unknown function (DUF1439) BER93_RS13520 PF00856 SET domain BER93_RS13525 PF02082 Transcriptional regulator BER93_RS13530 PF01458 Uncharacterized protein family (UPF0051) BER93_RS13535 PF00005 ABC transporter BER93_RS13540 PF01458 Uncharacterized protein family (UPF0051) BER93_RS13545 PF00266 Aminotransferase class-V BER93_RS13550 PF13673 Acetyltransferase (GNAT) domain BER93_RS13555 PF00355 Rieske [2Fe-2S] domain BER93_RS13560 PF00593 TonB dependent receptor BER93_RS13560 PF07715 TonB-dependent Receptor Plug Domain BER93_RS13565 PF13640 2OG-Fe(II) oxygenase superfamily BER93_RS13570 PF08238 Sel1 repeat BER93_RS13575 PF01527 Transposase BER93_RS13590 PF05962 HutD BER93_RS13595 PF12836 Helix-hairpin-helix motif BER93_RS13600 PF01546 Peptidase family M20/M25/M40 BER93_RS13600 PF07687 Peptidase dimerisation domain BER93_RS13605 PF04226 BER93_RS13605 BER93_RS13610 PF01636 Phosphotransferase enzyme family BER93_RS13615 PF00483 Nucleotidyl transferase BER93_RS13625 PF01695 IstB-like ATP binding protein BER93_RS13630 PF01594 BER93_RS13630 BER93_RS13635 PF09839 BER93_RS13635 BER93_RS13640 PF00586 AIR synthase related protein, N-terminal domain BER93_RS13640 PF02769 AIR synthase related protein, C-terminal domain BER93_RS13645 PF00551 Formyl transferase BER93_RS13650 PF11306 Protein of unknown function (DUF3108) BER93_RS13655 PF11306 Protein of unknown function (DUF3108) BER93_RS13670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BER93_RS13675 PF01722 BolA-like protein BER93_RS13680 PF00571 CBS domain BER93_RS13680 PF01380 SIS domain BER93_RS13685 PF08282 haloacid dehalogenase-like hydrolase BER93_RS13690 PF06835 Lipopolysaccharide-assembly, LptC-related BER93_RS13695 PF03968 OstA-like protein BER93_RS13700 PF00005 ABC transporter BER93_RS13700 PF12399 Branched-chain amino acid ATP-binding cassette transporter BER93_RS13705 PF00309 BER93_RS13705 BER93_RS13705 PF04552 Sigma-54, DNA binding domain BER93_RS13705 PF04963 Sigma-54 factor, core binding domain BER93_RS13710 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BER93_RS13715 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BER93_RS13720 PF02603 HPr Serine kinase N terminus BER93_RS13720 PF07475 HPr Serine kinase C-terminal domain BER93_RS13725 PF03668 BER93_RS13725 BER93_RS13730 PF03610 PTS system fructose IIA component BER93_RS13735 PF00381 PTS HPr component phosphorylation site BER93_RS13740 PF00391 PEP-utilising enzyme, mobile domain BER93_RS13740 PF02896 PEP-utilising enzyme, TIM barrel domain BER93_RS13740 PF05524 PEP-utilising enzyme, N-terminal BER93_RS13745 PF00571 CBS domain BER93_RS13745 PF01769 Divalent cation transporter BER93_RS13745 PF03448 MgtE intracellular N domain BER93_RS13750 PF01527 Transposase BER93_RS13770 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) BER93_RS13775 PF02534 Type IV secretory system Conjugative DNA transfer BER93_RS13780 PF02685 Glucokinase BER93_RS13785 PF00593 TonB dependent receptor BER93_RS13785 PF07715 TonB-dependent Receptor Plug Domain BER93_RS13790 PF01120 Alpha-L-fucosidase BER93_RS13790 PF16757 BER93_RS13790 BER93_RS13795 PF00704 Glycosyl hydrolases family 18 BER93_RS13800 PF00728 Glycosyl hydrolase family 20, catalytic domain BER93_RS13800 PF02838 Glycosyl hydrolase family 20, domain 2 BER93_RS13800 PF13290 BER93_RS13800 BER93_RS13805 PF00703 Glycosyl hydrolases family 2 BER93_RS13810 PF00933 Glycosyl hydrolase family 3 N terminal domain BER93_RS13810 PF01915 Glycosyl hydrolase family 3 C-terminal domain BER93_RS13810 PF07691 PA14 domain BER93_RS13810 PF14310 Fibronectin type III-like domain BER93_RS13815 PF00005 ABC transporter BER93_RS13820 PF01527 Transposase BER93_RS13825 PF13276 BER93_RS13825 BER93_RS13825 PF13683 BER93_RS13825 BER93_RS13830 PF13583 Metallo-peptidase family M12B Reprolysin-like BER93_RS13835 PF01609 Transposase DDE domain BER93_RS13840 PF01609 Transposase DDE domain BER93_RS13840 PF05598 BER93_RS13840 BER93_RS13850 PF00665 Integrase core domain BER93_RS13850 PF13276 BER93_RS13850 BER93_RS13855 PF01527 Transposase BER93_RS13870 PF01433 Peptidase family M1 BER93_RS13870 PF11838 ERAP1-like C-terminal domain BER93_RS13875 PF00709 Adenylosuccinate synthetase BER93_RS13880 PF09838 BER93_RS13880 BER93_RS13885 PF01145 SPFH domain / Band 7 family BER93_RS13890 PF01145 SPFH domain / Band 7 family BER93_RS13895 PF00072 Response regulator receiver domain BER93_RS13900 PF00226 DnaJ domain BER93_RS13900 PF01556 DnaJ C terminal domain BER93_RS13905 PF00011 Hsp20/alpha crystallin family BER93_RS13910 PF08534 Redoxin BER93_RS13915 PF00210 Ferritin-like domain BER93_RS13930 PF13751 BER93_RS13930 BER93_RS13935 PF01609 Transposase DDE domain BER93_RS13935 PF13340 BER93_RS13935 BER93_RS13940 PF13683 BER93_RS13940 BER93_RS13945 PF01609 Transposase DDE domain BER93_RS13950 PF01156 Inosine-uridine preferring nucleoside hydrolase BER93_RS13955 PF07715 TonB-dependent Receptor Plug Domain BER93_RS13960 PF04303 PrpF protein BER93_RS13965 PF00330 Aconitase family (aconitate hydratase) BER93_RS13965 PF00694 Aconitase C-terminal domain BER93_RS13970 PF00285 Citrate synthase BER93_RS13975 PF13714 Phosphoenolpyruvate phosphomutase BER93_RS13980 PF00158 Sigma-54 interaction domain BER93_RS13980 PF02954 Bacterial regulatory protein, Fis family BER93_RS13980 PF06506 Propionate catabolism activator BER93_RS13995 PF01609 Transposase DDE domain BER93_RS13995 PF05598 BER93_RS13995 BER93_RS14010 PF07238 PilZ domain BER93_RS14015 PF13177 DNA polymerase III, delta subunit BER93_RS14020 PF02618 YceG-like family BER93_RS14025 PF00425 chorismate binding enzyme BER93_RS14025 PF04715 Anthranilate synthase component I, N terminal region BER93_RS14030 PF00109 Beta-ketoacyl synthase, N-terminal domain BER93_RS14030 PF02801 Beta-ketoacyl synthase, C-terminal domain BER93_RS14035 PF00550 Phosphopantetheine attachment site BER93_RS14040 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS14045 PF00698 Acyl transferase domain BER93_RS14050 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BER93_RS14050 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER93_RS14055 PF01783 Ribosomal L32p protein family BER93_RS14060 PF02620 BER93_RS14060 BER93_RS14065 PF02545 Maf-like protein BER93_RS14075 PF00535 Glycosyl transferase family 2 BER93_RS14080 PF13231 BER93_RS14080 BER93_RS14085 PF07726 ATPase family associated with various cellular activities (AAA) BER93_RS14090 PF01882 BER93_RS14090 BER93_RS14095 PF01841 Transglutaminase-like superfamily BER93_RS14095 PF11992 BER93_RS14095 BER93_RS14100 PF03843 BER93_RS14100 BER93_RS14105 PF01230 HIT domain BER93_RS14110 PF02132 RecR protein BER93_RS14110 PF13662 Toprim domain BER93_RS14115 PF02575 YbaB/EbfC DNA-binding family BER93_RS14120 PF12169 DNA polymerase III subunits gamma and tau domain III BER93_RS14120 PF12170 DNA polymerase III tau subunit V interacting with alpha BER93_RS14120 PF13177 DNA polymerase III, delta subunit BER93_RS14135 PF02391 MoaE protein BER93_RS14140 PF02597 ThiS family BER93_RS14145 PF01967 MoaC family BER93_RS14150 PF04055 Radical SAM superfamily BER93_RS14150 PF06463 Molybdenum Cofactor Synthesis C BER93_RS14150 PF13353 4Fe-4S single cluster domain BER93_RS14155 PF12706 Beta-lactamase superfamily domain BER93_RS14160 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family BER93_RS14165 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BER93_RS14180 PF13672 Protein phosphatase 2C BER93_RS14185 PF00929 Exonuclease BER93_RS14190 PF00075 RNase H BER93_RS14200 PF00753 Metallo-beta-lactamase superfamily BER93_RS14200 PF16123 BER93_RS14200 BER93_RS14205 PF01464 Transglycosylase SLT domain BER93_RS14205 PF01476 LysM domain BER93_RS14215 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BER93_RS14215 PF06827 Zinc finger found in FPG and IleRS BER93_RS14215 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BER93_RS14220 PF00326 Prolyl oligopeptidase family BER93_RS14220 PF07676 WD40-like Beta Propeller Repeat BER93_RS14225 PF03169 BER93_RS14225 BER93_RS14230 PF12582 BER93_RS14230 BER93_RS14235 PF08668 HDOD domain BER93_RS14240 PF01609 Transposase DDE domain BER93_RS14255 PF01336 OB-fold nucleic acid binding domain BER93_RS14255 PF02811 PHP domain BER93_RS14255 PF07733 Bacterial DNA polymerase III alpha subunit BER93_RS14255 PF14579 Helix-hairpin-helix motif BER93_RS14260 PF00817 impB/mucB/samB family BER93_RS14270 PF00717 Peptidase S24-like BER93_RS14270 PF01726 LexA DNA binding domain BER93_RS14280 PF01609 Transposase DDE domain BER93_RS14305 PF00111 2Fe-2S iron-sulfur cluster binding domain BER93_RS14305 PF01799 [2Fe-2S] binding domain BER93_RS14310 PF00941 FAD binding domain in molybdopterin dehydrogenase BER93_RS14310 PF03450 CO dehydrogenase flavoprotein C-terminal domain BER93_RS14315 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BER93_RS14315 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BER93_RS14320 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS14330 PF05598 BER93_RS14330 BER93_RS14360 PF01609 Transposase DDE domain BER93_RS14360 PF13340 BER93_RS14360 BER93_RS14365 PF01609 Transposase DDE domain BER93_RS14365 PF05598 BER93_RS14365 BER93_RS14390 PF05697 Bacterial trigger factor protein (TF) BER93_RS14390 PF05698 Bacterial trigger factor protein (TF) C-terminus BER93_RS14395 PF00574 Clp protease BER93_RS14400 PF06689 ClpX C4-type zinc finger BER93_RS14400 PF07724 AAA domain (Cdc48 subfamily) BER93_RS14400 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_RS14405 PF00004 ATPase family associated with various cellular activities (AAA) BER93_RS14405 PF02190 ATP-dependent protease La (LON) domain BER93_RS14405 PF05362 Lon protease (S16) C-terminal proteolytic domain BER93_RS14410 PF00216 Bacterial DNA-binding protein BER93_RS14430 PF13145 PPIC-type PPIASE domain BER93_RS14430 PF13616 PPIC-type PPIASE domain BER93_RS14430 PF13623 BER93_RS14430 BER93_RS14455 PF04055 Radical SAM superfamily BER93_RS14455 PF13394 4Fe-4S single cluster domain BER93_RS14460 PF13525 Outer membrane lipoprotein BER93_RS14460 PF16331 BER93_RS14460 BER93_RS14465 PF00691 OmpA family BER93_RS14470 PF04052 TolB amino-terminal domain BER93_RS14470 PF07676 WD40-like Beta Propeller Repeat BER93_RS14475 PF13103 TonB C terminal BER93_RS14480 PF02472 Biopolymer transport protein ExbD/TolR BER93_RS14485 PF01618 BER93_RS14485 BER93_RS14490 PF03061 Thioesterase superfamily BER93_RS14495 PF05491 Holliday junction DNA helicase ruvB C-terminus BER93_RS14495 PF05496 Holliday junction DNA helicase ruvB N-terminus BER93_RS14500 PF02705 BER93_RS14500 BER93_RS14505 PF01330 RuvA N terminal domain BER93_RS14505 PF07499 RuvA, C-terminal domain BER93_RS14505 PF14520 Helix-hairpin-helix domain BER93_RS14510 PF02075 Crossover junction endodeoxyribonuclease RuvC BER93_RS14515 PF01709 Transcriptional regulator BER93_RS14525 PF13673 Acetyltransferase (GNAT) domain BER93_RS14530 PF00152 tRNA synthetases class II (D, K and N) BER93_RS14530 PF01336 OB-fold nucleic acid binding domain BER93_RS14530 PF02938 GAD domain BER93_RS14535 PF11218 BER93_RS14535 BER93_RS14545 PF01471 Putative peptidoglycan binding domain BER93_RS14545 PF13406 Transglycosylase SLT domain BER93_RS14550 PF00005 ABC transporter BER93_RS14550 PF12848 ABC transporter BER93_RS14550 PF16326 BER93_RS14550 BER93_RS14555 PF00593 TonB dependent receptor BER93_RS14555 PF07715 TonB-dependent Receptor Plug Domain BER93_RS14560 PF01609 Transposase DDE domain BER93_RS14570 PF00593 TonB dependent receptor BER93_RS14570 PF07715 TonB-dependent Receptor Plug Domain BER93_RS14575 PF00593 TonB dependent receptor BER93_RS14575 PF07715 TonB-dependent Receptor Plug Domain BER93_RS14580 PF00999 Sodium/hydrogen exchanger family BER93_RS14580 PF02254 TrkA-N domain BER93_RS14590 PF01609 Transposase DDE domain BER93_RS14590 PF05598 BER93_RS14590 BER93_RS14600 PF01244 Membrane dipeptidase (Peptidase family M19) BER93_RS14610 PF00324 Amino acid permease BER93_RS14615 PF01609 Transposase DDE domain BER93_RS14615 PF05598 BER93_RS14615 BER93_RS14620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_RS14620 PF00672 HAMP domain BER93_RS14620 PF12729 BER93_RS14620 BER93_RS14630 PF00561 alpha/beta hydrolase fold BER93_RS14635 PF00196 Bacterial regulatory proteins, luxR family BER93_RS14635 PF03472 Autoinducer binding domain BER93_RS14640 PF13520 Amino acid permease BER93_RS14645 PF13365 Trypsin-like peptidase domain BER93_RS14655 PF01609 Transposase DDE domain BER93_RS14670 PF03738 Glutathionylspermidine synthase preATP-grasp BER93_RS14675 PF06693 BER93_RS14675 BER93_RS14680 PF03994 BER93_RS14680 BER93_RS14685 PF10679 BER93_RS14685 BER93_RS14695 PF04012 BER93_RS14695 BER93_RS14700 PF09938 BER93_RS14700 BER93_RS14710 PF01243 Pyridoxamine 5'-phosphate oxidase BER93_RS14710 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BER93_RS14715 PF01202 Shikimate kinase BER93_RS14720 PF01761 3-dehydroquinate synthase BER93_RS14725 PF05406 WGR domain BER93_RS14730 PF01208 Uroporphyrinogen decarboxylase (URO-D) BER93_RS14735 PF07690 Major Facilitator Superfamily BER93_RS14740 PF01609 Transposase DDE domain BER93_RS14740 PF05598 BER93_RS14740 BER93_RS14745 PF00072 Response regulator receiver domain BER93_RS14745 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS14745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS14745 PF07494 Two component regulator propeller BER93_RS14745 PF07495 Y_Y_Y domain BER93_RS14750 PF00072 Response regulator receiver domain BER93_RS14750 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS14750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS14750 PF07494 Two component regulator propeller BER93_RS14750 PF07495 Y_Y_Y domain BER93_RS14770 PF00072 Response regulator receiver domain BER93_RS14775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS14775 PF08448 PAS fold BER93_RS14805 PF12833 Helix-turn-helix domain BER93_RS14810 PF00486 Transcriptional regulatory protein, C terminal BER93_RS14815 PF05656 BER93_RS14815 BER93_RS14820 PF13481 AAA domain BER93_RS14820 PF13541 Subunit ChlI of Mg-chelatase BER93_RS14825 PF05299 M61 glycyl aminopeptidase BER93_RS14825 PF07720 Tetratricopeptide repeat BER93_RS14830 PF03626 BER93_RS14830 BER93_RS14835 PF00510 Cytochrome c oxidase subunit III BER93_RS14840 PF00115 Cytochrome C and Quinol oxidase polypeptide I BER93_RS14845 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BER93_RS14845 PF06481 COX Aromatic Rich Motif BER93_RS14855 PF02401 LytB protein BER93_RS14860 PF01252 BER93_RS14860 BER93_RS14865 PF00133 tRNA synthetases class I (I, L, M and V) BER93_RS14865 PF08264 Anticodon-binding domain of tRNA BER93_RS14870 PF01687 Riboflavin kinase BER93_RS14870 PF06574 FAD synthetase BER93_RS14875 PF03023 BER93_RS14875 BER93_RS14880 PF01649 Ribosomal protein S20 BER93_RS14885 PF01018 GTP1/OBG BER93_RS14885 PF01926 50S ribosome-binding GTPase BER93_RS14890 PF01016 Ribosomal L27 protein BER93_RS14895 PF00829 Ribosomal prokaryotic L21 protein BER93_RS14900 PF00005 ABC transporter BER93_RS14905 PF13279 Thioesterase-like superfamily BER93_RS14910 PF04314 Protein of unknown function (DUF461) BER93_RS14915 PF00378 Enoyl-CoA hydratase/isomerase family BER93_RS14920 PF13622 Thioesterase-like superfamily BER93_RS14925 PF09413 Domain of unknown function (DUF2007) BER93_RS14940 PF13202 EF hand BER93_RS14940 PF13499 EF-hand domain pair BER93_RS14945 PF04376 BER93_RS14945 BER93_RS14945 PF04377 BER93_RS14945 BER93_RS14950 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_RS14955 PF01609 Transposase DDE domain BER93_RS14955 PF05598 BER93_RS14955 BER93_RS14970 PF01527 Transposase BER93_RS14975 PF01370 NAD dependent epimerase/dehydratase family BER93_RS14975 PF02222 ATP-grasp domain BER93_RS14980 PF01145 SPFH domain / Band 7 family BER93_RS14995 PF01609 Transposase DDE domain BER93_RS15000 PF02557 D-alanyl-D-alanine carboxypeptidase BER93_RS15005 PF00730 HhH-GPD superfamily base excision DNA repair protein BER93_RS15010 PF04241 BER93_RS15010 BER93_RS15020 PF00072 Response regulator receiver domain BER93_RS15020 PF00196 Bacterial regulatory proteins, luxR family BER93_RS15025 PF07730 Histidine kinase BER93_RS15030 PF00583 Acetyltransferase (GNAT) family BER93_RS15035 PF03775 Septum formation inhibitor MinC, C-terminal domain BER93_RS15035 PF05209 Septum formation inhibitor MinC, N-terminal domain BER93_RS15040 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_RS15045 PF03776 Septum formation topological specificity factor MinE BER93_RS15055 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS15055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS15060 PF00072 Response regulator receiver domain BER93_RS15060 PF00486 Transcriptional regulatory protein, C terminal BER93_RS15070 PF01569 PAP2 superfamily BER93_RS15075 PF00884 Sulfatase BER93_RS15075 PF08019 BER93_RS15075 BER93_RS15080 PF01401 Angiotensin-converting enzyme BER93_RS15095 PF02347 Glycine cleavage system P-protein BER93_RS15100 PF00199 Catalase BER93_RS15100 PF06628 Catalase-related immune-responsive BER93_RS15105 PF01609 Transposase DDE domain BER93_RS15105 PF13340 BER93_RS15105 BER93_RS15110 PF08448 PAS fold BER93_RS15110 PF12833 Helix-turn-helix domain BER93_RS15120 PF01609 Transposase DDE domain BER93_RS15140 PF01609 Transposase DDE domain BER93_RS15140 PF05598 BER93_RS15140 BER93_RS15150 PF03328 HpcH/HpaI aldolase/citrate lyase family BER93_RS15155 PF00593 TonB dependent receptor BER93_RS15155 PF07715 TonB-dependent Receptor Plug Domain BER93_RS15165 PF04183 IucA / IucC family BER93_RS15165 PF06276 Ferric iron reductase FhuF-like transporter BER93_RS15170 PF07690 Major Facilitator Superfamily BER93_RS15175 PF04183 IucA / IucC family BER93_RS15175 PF06276 Ferric iron reductase FhuF-like transporter BER93_RS15180 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BER93_RS15180 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BER93_RS15185 PF00593 TonB dependent receptor BER93_RS15185 PF07715 TonB-dependent Receptor Plug Domain BER93_RS15195 PF00004 ATPase family associated with various cellular activities (AAA) BER93_RS15195 PF02861 Clp amino terminal domain BER93_RS15195 PF07724 AAA domain (Cdc48 subfamily) BER93_RS15195 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_RS15220 PF13503 BER93_RS15220 BER93_RS15225 PF05954 Phage late control gene D protein (GPD) BER93_RS15225 PF10106 BER93_RS15225 BER93_RS15225 PF13296 BER93_RS15225 BER93_RS15250 PF05954 Phage late control gene D protein (GPD) BER93_RS15250 PF10106 BER93_RS15250 BER93_RS15250 PF13296 BER93_RS15250 BER93_RS15255 PF00665 Integrase core domain BER93_RS15255 PF13276 BER93_RS15255 BER93_RS15260 PF01527 Transposase BER93_RS15280 PF01609 Transposase DDE domain BER93_RS15280 PF05598 BER93_RS15280 BER93_RS15310 PF12811 BER93_RS15310 BER93_RS15315 PF01609 Transposase DDE domain BER93_RS15315 PF05598 BER93_RS15315 BER93_RS15320 PF00180 Isocitrate/isopropylmalate dehydrogenase BER93_RS15325 PF02627 Carboxymuconolactone decarboxylase family BER93_RS15330 PF00462 Glutaredoxin BER93_RS15340 PF01435 Peptidase family M48 BER93_RS15345 PF00072 Response regulator receiver domain BER93_RS15345 PF00486 Transcriptional regulatory protein, C terminal BER93_RS15350 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS15350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS15350 PF11808 BER93_RS15350 BER93_RS15355 PF02503 Polyphosphate kinase middle domain BER93_RS15355 PF13089 Polyphosphate kinase N-terminal domain BER93_RS15355 PF13090 Polyphosphate kinase C-terminal domain BER93_RS15360 PF02541 Ppx/GppA phosphatase family BER93_RS15370 PF01569 PAP2 superfamily BER93_RS15375 PF00149 Calcineurin-like phosphoesterase BER93_RS15385 PF13688 Metallo-peptidase family M12 BER93_RS15395 PF04305 BER93_RS15395 BER93_RS15400 PF13522 Glutamine amidotransferase domain BER93_RS15405 PF02674 BER93_RS15405 BER93_RS15410 PF05036 Sporulation related domain BER93_RS15415 PF02875 Mur ligase family, glutamate ligase domain BER93_RS15415 PF08245 Mur ligase middle domain BER93_RS15420 PF13855 Leucine rich repeat BER93_RS15435 PF01609 Transposase DDE domain BER93_RS15435 PF05598 BER93_RS15435 BER93_RS15440 PF06824 Protein of unknown function (DUF1237) BER93_RS15445 PF07971 Glycosyl hydrolase family 92 BER93_RS15450 PF01301 Glycosyl hydrolases family 35 BER93_RS15465 PF00069 Protein kinase domain BER93_RS15495 PF02384 N-6 DNA Methylase BER93_RS15495 PF12161 HsdM N-terminal domain BER93_RS15500 PF02498 BER93_RS15500 BER93_RS15510 PF01420 Type I restriction modification DNA specificity domain BER93_RS15515 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BER93_RS15515 PF04851 Type III restriction enzyme, res subunit BER93_RS15520 PF01863 Protein of unknown function DUF45 BER93_RS15535 PF01527 Transposase BER93_RS15545 PF00583 Acetyltransferase (GNAT) family BER93_RS15555 PF01066 CDP-alcohol phosphatidyltransferase BER93_RS15560 PF13511 BER93_RS15560 BER93_RS15565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BER93_RS15565 PF03129 Anticodon binding domain BER93_RS15565 PF04073 Aminoacyl-tRNA editing domain BER93_RS15570 PF00816 H-NS histone family BER93_RS15575 PF06738 BER93_RS15575 BER93_RS15575 PF12821 BER93_RS15575 BER93_RS15580 PF02405 BER93_RS15580 BER93_RS15585 PF00005 ABC transporter BER93_RS15590 PF02470 BER93_RS15590 BER93_RS15595 PF03886 Protein of unknown function (DUF330) BER93_RS15605 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase BER93_RS15605 PF13450 NAD(P)-binding Rossmann-like domain BER93_RS15610 PF05045 BER93_RS15610 BER93_RS15615 PF01144 Coenzyme A transferase BER93_RS15620 PF01144 Coenzyme A transferase BER93_RS15625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BER93_RS15625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BER93_RS15625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BER93_RS15625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BER93_RS15630 PF00483 Nucleotidyl transferase BER93_RS15630 PF01050 Mannose-6-phosphate isomerase BER93_RS15635 PF04321 RmlD substrate binding domain BER93_RS15640 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BER93_RS15645 PF00483 Nucleotidyl transferase BER93_RS15650 PF16363 BER93_RS15650 BER93_RS15655 PF01012 Electron transfer flavoprotein domain BER93_RS15660 PF00766 Electron transfer flavoprotein FAD-binding domain BER93_RS15660 PF01012 Electron transfer flavoprotein domain BER93_RS15670 PF00535 Glycosyl transferase family 2 BER93_RS15675 PF04138 BER93_RS15675 BER93_RS15690 PF01370 NAD dependent epimerase/dehydratase family BER93_RS15695 PF16363 BER93_RS15695 BER93_RS15705 PF13692 Glycosyl transferases group 1 BER93_RS15710 PF00534 Glycosyl transferases group 1 BER93_RS15715 PF13847 Methyltransferase domain BER93_RS15720 PF00005 ABC transporter BER93_RS15720 PF14524 Wzt C-terminal domain BER93_RS15725 PF01061 BER93_RS15725 BER93_RS15730 PF00534 Glycosyl transferases group 1 BER93_RS15735 PF01053 Cys/Met metabolism PLP-dependent enzyme BER93_RS15740 PF00291 Pyridoxal-phosphate dependent enzyme BER93_RS15740 PF00571 CBS domain BER93_RS15745 PF04325 Protein of unknown function (DUF465) BER93_RS15755 PF14346 Domain of unknown function (DUF4398) BER93_RS15760 PF00437 Type II/IV secretion system protein BER93_RS15770 PF13410 Glutathione S-transferase, C-terminal domain BER93_RS15770 PF13417 Glutathione S-transferase, N-terminal domain BER93_RS15775 PF01557 Fumarylacetoacetate (FAA) hydrolase family BER93_RS15780 PF00270 DEAD/DEAH box helicase BER93_RS15780 PF00271 Helicase conserved C-terminal domain BER93_RS15785 PF01242 6-pyruvoyl tetrahydropterin synthase BER93_RS15795 PF13500 AAA domain BER93_RS15800 PF13185 GAF domain BER93_RS15805 PF04994 TfoX C-terminal domain BER93_RS15815 PF01609 Transposase DDE domain BER93_RS15815 PF05598 BER93_RS15815 BER93_RS15820 PF01527 Transposase BER93_RS15825 PF13419 Haloacid dehalogenase-like hydrolase BER93_RS15830 PF00817 impB/mucB/samB family BER93_RS15830 PF11798 IMS family HHH motif BER93_RS15830 PF11799 impB/mucB/samB family C-terminal domain BER93_RS15840 PF07977 FabA-like domain BER93_RS15845 PF00109 Beta-ketoacyl synthase, N-terminal domain BER93_RS15845 PF02801 Beta-ketoacyl synthase, C-terminal domain BER93_RS15855 PF01432 Peptidase family M3 BER93_RS15860 PF00291 Pyridoxal-phosphate dependent enzyme BER93_RS15870 PF00394 Multicopper oxidase BER93_RS15870 PF07731 Multicopper oxidase BER93_RS15870 PF07732 Multicopper oxidase BER93_RS15875 PF05275 BER93_RS15875 BER93_RS15880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BER93_RS15890 PF01380 SIS domain BER93_RS15890 PF13522 Glutamine amidotransferase domain BER93_RS15905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS15910 PF13229 Right handed beta helix region BER93_RS15915 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_RS15915 PF12804 MobA-like NTP transferase domain BER93_RS15915 PF14602 Hexapeptide repeat of succinyl-transferase BER93_RS15920 PF04138 BER93_RS15920 BER93_RS15925 PF01817 Chorismate mutase type II BER93_RS15930 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BER93_RS15930 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BER93_RS15935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_RS15935 PF02874 ATP synthase alpha/beta family, beta-barrel domain BER93_RS15940 PF00231 ATP synthase BER93_RS15945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_RS15945 PF00306 ATP synthase alpha/beta chain, C terminal domain BER93_RS15945 PF02874 ATP synthase alpha/beta family, beta-barrel domain BER93_RS15950 PF00213 ATP synthase delta (OSCP) subunit BER93_RS15955 PF00430 ATP synthase B/B' CF(0) BER93_RS15960 PF00137 ATP synthase subunit C BER93_RS15965 PF00119 ATP synthase A chain BER93_RS15980 PF00364 Biotin-requiring enzyme BER93_RS15980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_RS15980 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_RS15990 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BER93_RS15990 PF00364 Biotin-requiring enzyme BER93_RS15990 PF02817 e3 binding domain BER93_RS16000 PF03167 Uracil DNA glycosylase superfamily BER93_RS16005 PF03922 OmpW family BER93_RS16015 PF03180 NLPA lipoprotein BER93_RS16020 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS16025 PF00005 ABC transporter BER93_RS16025 PF09383 NIL domain BER93_RS16030 PF04461 Protein of unknown function (DUF520) BER93_RS16045 PF07209 BER93_RS16045 BER93_RS16060 PF01609 Transposase DDE domain BER93_RS16065 PF01609 Transposase DDE domain BER93_RS16075 PF00849 RNA pseudouridylate synthase BER93_RS16080 PF05175 Methyltransferase small domain BER93_RS16090 PF07995 Glucose / Sorbosone dehydrogenase BER93_RS16095 PF11607 Protein of unknown function (DUF3247) BER93_RS16100 PF00072 Response regulator receiver domain BER93_RS16100 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS16100 PF08448 PAS fold BER93_RS16100 PF13188 PAS domain BER93_RS16115 PF11454 BER93_RS16115 BER93_RS16120 PF00842 Alanine racemase, C-terminal domain BER93_RS16120 PF01168 Alanine racemase, N-terminal domain BER93_RS16125 PF01266 FAD dependent oxidoreductase BER93_RS16130 PF01037 AsnC family BER93_RS16130 PF13404 AsnC-type helix-turn-helix domain BER93_RS16140 PF01641 SelR domain BER93_RS16145 PF01618 BER93_RS16145 BER93_RS16150 PF00691 OmpA family BER93_RS16150 PF13677 BER93_RS16150 BER93_RS16160 PF13223 BER93_RS16160 BER93_RS16170 PF11730 BER93_RS16170 BER93_RS16180 PF01609 Transposase DDE domain BER93_RS16180 PF13340 BER93_RS16180 BER93_RS16185 PF01609 Transposase DDE domain BER93_RS16220 PF01743 Poly A polymerase head domain BER93_RS16220 PF01966 HD domain BER93_RS16220 PF12627 Probable RNA and SrmB- binding site of polymerase A BER93_RS16230 PF01464 Transglycosylase SLT domain BER93_RS16230 PF14718 Soluble lytic murein transglycosylase L domain BER93_RS16245 PF01609 Transposase DDE domain BER93_RS16245 PF05598 BER93_RS16245 BER93_RS16250 PF13683 BER93_RS16250 BER93_RS16300 PF01609 Transposase DDE domain BER93_RS16300 PF13340 BER93_RS16300 BER93_RS16305 PF01220 Dehydroquinase class II BER93_RS16310 PF00364 Biotin-requiring enzyme BER93_RS16320 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain BER93_RS16320 PF02785 Biotin carboxylase C-terminal domain BER93_RS16320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BER93_RS16325 PF06325 Ribosomal protein L11 methyltransferase (PrmA) BER93_RS16335 PF01381 Helix-turn-helix BER93_RS16340 PF11906 BER93_RS16340 BER93_RS16345 PF02954 Bacterial regulatory protein, Fis family BER93_RS16350 PF00818 BER93_RS16350 BER93_RS16355 PF01808 AICARFT/IMPCHase bienzyme BER93_RS16355 PF02142 MGS-like domain BER93_RS16360 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BER93_RS16360 PF02843 Phosphoribosylglycinamide synthetase, C domain BER93_RS16360 PF02844 Phosphoribosylglycinamide synthetase, N domain BER93_RS16365 PF12805 BER93_RS16365 BER93_RS16365 PF13515 BER93_RS16365 BER93_RS16370 PF07690 Major Facilitator Superfamily BER93_RS16385 PF01553 Acyltransferase BER93_RS16385 PF07690 Major Facilitator Superfamily BER93_RS16390 PF04505 BER93_RS16390 BER93_RS16395 PF10825 BER93_RS16395 BER93_RS16405 PF00293 NUDIX domain BER93_RS16405 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BER93_RS16405 PF09297 NADH pyrophosphatase zinc ribbon domain BER93_RS16410 PF00589 Phage integrase family BER93_RS16415 PF01609 Transposase DDE domain BER93_RS16415 PF05598 BER93_RS16415 BER93_RS16425 PF01527 Transposase BER93_RS16430 PF00665 Integrase core domain BER93_RS16430 PF13276 BER93_RS16430 BER93_RS16460 PF01717 Cobalamin-independent synthase, Catalytic domain BER93_RS16460 PF08267 Cobalamin-independent synthase, N-terminal domain BER93_RS16465 PF07751 BER93_RS16465 BER93_RS16470 PF13460 NADH(P)-binding BER93_RS16475 PF01638 HxlR-like helix-turn-helix BER93_RS16480 PF00920 Dehydratase family BER93_RS16485 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_RS16500 PF01527 Transposase BER93_RS16505 PF00665 Integrase core domain BER93_RS16505 PF13276 BER93_RS16505 BER93_RS16515 PF01609 Transposase DDE domain BER93_RS16515 PF05598 BER93_RS16515 BER93_RS16520 PF00873 AcrB/AcrD/AcrF family BER93_RS16525 PF00873 AcrB/AcrD/AcrF family BER93_RS16535 PF00551 Formyl transferase BER93_RS16535 PF01842 ACT domain BER93_RS16540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BER93_RS16545 PF02146 Sir2 family BER93_RS16555 PF07690 Major Facilitator Superfamily BER93_RS16560 PF01026 TatD related DNase BER93_RS16565 PF07308 BER93_RS16565 BER93_RS16575 PF00271 Helicase conserved C-terminal domain BER93_RS16575 PF04408 Helicase associated domain (HA2) BER93_RS16575 PF08482 BER93_RS16575 BER93_RS16590 PF05598 BER93_RS16590 BER93_RS16595 PF00849 RNA pseudouridylate synthase BER93_RS16600 PF13489 Methyltransferase domain BER93_RS16605 PF00248 Aldo/keto reductase family BER93_RS16610 PF00107 Zinc-binding dehydrogenase BER93_RS16610 PF16884 BER93_RS16610 BER93_RS16615 PF00248 Aldo/keto reductase family BER93_RS16625 PF02566 OsmC-like protein BER93_RS16635 PF03969 AFG1-like ATPase BER93_RS16640 PF12146 Putative lysophospholipase BER93_RS16660 PF03203 BER93_RS16660 BER93_RS16665 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_RS16670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BER93_RS16675 PF11804 BER93_RS16675 BER93_RS16680 PF00440 Bacterial regulatory proteins, tetR family BER93_RS16685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_RS16685 PF02770 Acyl-CoA dehydrogenase, middle domain BER93_RS16685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_RS16690 PF01039 Carboxyl transferase domain BER93_RS16695 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain BER93_RS16695 PF00364 Biotin-requiring enzyme BER93_RS16695 PF02785 Biotin carboxylase C-terminal domain BER93_RS16695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BER93_RS16705 PF01867 CRISPR associated protein Cas1 BER93_RS16715 PF09611 BER93_RS16715 BER93_RS16720 PF09614 BER93_RS16720 BER93_RS16725 PF09615 BER93_RS16725 BER93_RS16730 PF09618 CRISPR-associated protein (Cas_Csy4) BER93_RS16735 PF00665 Integrase core domain BER93_RS16745 PF01527 Transposase BER93_RS16755 PF00873 AcrB/AcrD/AcrF family BER93_RS16760 PF16576 BER93_RS16760 BER93_RS16765 PF00009 Elongation factor Tu GTP binding domain BER93_RS16765 PF01583 Adenylylsulphate kinase BER93_RS16770 PF01507 Phosphoadenosine phosphosulfate reductase family BER93_RS16775 PF00175 Oxidoreductase NAD-binding domain BER93_RS16775 PF00258 Flavodoxin BER93_RS16775 PF00667 FAD binding domain BER93_RS16780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BER93_RS16780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BER93_RS16785 PF01507 Phosphoadenosine phosphosulfate reductase family BER93_RS16790 PF03929 BER93_RS16790 BER93_RS16795 PF00593 TonB dependent receptor BER93_RS16795 PF07715 TonB-dependent Receptor Plug Domain BER93_RS16800 PF11162 BER93_RS16800 BER93_RS16805 PF01590 GAF domain BER93_RS16805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS16815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_RS16815 PF03466 LysR substrate binding domain BER93_RS16820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BER93_RS16825 PF00291 Pyridoxal-phosphate dependent enzyme BER93_RS16830 PF01661 Macro domain BER93_RS16835 PF00274 Fructose-bisphosphate aldolase class-I BER93_RS16840 PF00224 Pyruvate kinase, barrel domain BER93_RS16840 PF02887 Pyruvate kinase, alpha/beta domain BER93_RS16845 PF13419 Haloacid dehalogenase-like hydrolase BER93_RS16850 PF00162 Phosphoglycerate kinase BER93_RS16855 PF10101 BER93_RS16855 BER93_RS16875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS16875 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS16880 PF00266 Aminotransferase class-V BER93_RS16885 PF01507 Phosphoadenosine phosphosulfate reductase family BER93_RS16895 PF13182 BER93_RS16895 BER93_RS16905 PF01609 Transposase DDE domain BER93_RS16905 PF13340 BER93_RS16905 BER93_RS16910 PF12760 Transposase zinc-ribbon domain BER93_RS16910 PF12762 BER93_RS16910 BER93_RS16915 PF01527 Transposase BER93_RS16920 PF00665 Integrase core domain BER93_RS16920 PF13276 BER93_RS16920 BER93_RS16925 PF12762 BER93_RS16925 BER93_RS16930 PF01609 Transposase DDE domain BER93_RS16930 PF05598 BER93_RS16930 BER93_RS16945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BER93_RS16945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BER93_RS16950 PF03922 OmpW family BER93_RS16955 PF02265 S1/P1 Nuclease BER93_RS16960 PF00753 Metallo-beta-lactamase superfamily BER93_RS16965 PF13531 Bacterial extracellular solute-binding protein BER93_RS16970 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS16975 PF00005 ABC transporter BER93_RS16990 PF03965 Penicillinase repressor BER93_RS17000 PF01471 Putative peptidoglycan binding domain BER93_RS17000 PF03734 L,D-transpeptidase catalytic domain BER93_RS17005 PF01551 Peptidase family M23 BER93_RS17010 PF07715 TonB-dependent Receptor Plug Domain BER93_RS17015 PF00456 Transketolase, thiamine diphosphate binding domain BER93_RS17015 PF02779 Transketolase, pyrimidine binding domain BER93_RS17015 PF02780 Transketolase, C-terminal domain BER93_RS17020 PF00375 Sodium:dicarboxylate symporter family BER93_RS17025 PF13584 BER93_RS17025 BER93_RS17030 PF00515 Tetratricopeptide repeat BER93_RS17030 PF13519 von Willebrand factor type A domain BER93_RS17035 PF00092 von Willebrand factor type A domain BER93_RS17040 PF14316 BER93_RS17040 BER93_RS17045 PF01882 BER93_RS17045 BER93_RS17050 PF07726 ATPase family associated with various cellular activities (AAA) BER93_RS17075 PF01609 Transposase DDE domain BER93_RS17075 PF05598 BER93_RS17075 BER93_RS17090 PF00999 Sodium/hydrogen exchanger family BER93_RS17110 PF01609 Transposase DDE domain BER93_RS17115 PF02469 Fasciclin domain BER93_RS17120 PF03167 Uracil DNA glycosylase superfamily BER93_RS17120 PF13566 BER93_RS17120 BER93_RS17125 PF04055 Radical SAM superfamily BER93_RS17130 PF00248 Aldo/keto reductase family BER93_RS17135 PF00535 Glycosyl transferase family 2 BER93_RS17140 PF01431 Peptidase family M13 BER93_RS17140 PF05649 Peptidase family M13 BER93_RS17145 PF09995 BER93_RS17145 BER93_RS17155 PF13520 Amino acid permease BER93_RS17170 PF05974 Domain of unknown function (DUF892) BER93_RS17175 PF05067 Manganese containing catalase BER93_RS17190 PF01339 CheB methylesterase BER93_RS17190 PF01739 CheR methyltransferase, SAM binding domain BER93_RS17190 PF03705 CheR methyltransferase, all-alpha domain BER93_RS17190 PF07536 BER93_RS17190 BER93_RS17190 PF08447 PAS fold BER93_RS17190 PF13596 PAS domain BER93_RS17195 PF00072 Response regulator receiver domain BER93_RS17205 PF00072 Response regulator receiver domain BER93_RS17205 PF00158 Sigma-54 interaction domain BER93_RS17205 PF02954 Bacterial regulatory protein, Fis family BER93_RS17230 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS17235 PF16363 BER93_RS17235 BER93_RS17240 PF13692 Glycosyl transferases group 1 BER93_RS17245 PF03275 UDP-galactopyranose mutase BER93_RS17245 PF13450 NAD(P)-binding Rossmann-like domain BER93_RS17255 PF00005 ABC transporter BER93_RS17255 PF00664 ABC transporter transmembrane region BER93_RS17260 PF12244 BER93_RS17260 BER93_RS17265 PF13628 BER93_RS17265 BER93_RS17270 PF00107 Zinc-binding dehydrogenase BER93_RS17270 PF08240 Alcohol dehydrogenase GroES-like domain BER93_RS17270 PF13823 Alcohol dehydrogenase GroES-associated BER93_RS17280 PF03692 BER93_RS17280 BER93_RS17290 PF11828 BER93_RS17290 BER93_RS17295 PF05650 BER93_RS17295 BER93_RS17300 PF00691 OmpA family BER93_RS17305 PF11445 BER93_RS17305 BER93_RS17310 PF00593 TonB dependent receptor BER93_RS17310 PF07715 TonB-dependent Receptor Plug Domain BER93_RS17315 PF12040 BER93_RS17315 BER93_RS17320 PF12040 BER93_RS17320 BER93_RS17320 PF12679 BER93_RS17320 BER93_RS17325 PF00005 ABC transporter BER93_RS17355 PF00916 BER93_RS17355 BER93_RS17355 PF01740 STAS domain BER93_RS17380 PF01527 Transposase BER93_RS17395 PF13304 AAA domain BER93_RS17400 PF00456 Transketolase, thiamine diphosphate binding domain BER93_RS17410 PF01609 Transposase DDE domain BER93_RS17410 PF13340 BER93_RS17410 BER93_RS17420 PF00672 HAMP domain BER93_RS17420 PF02743 Cache domain BER93_RS17420 PF07228 Stage II sporulation protein E (SpoIIE) BER93_RS17425 PF13581 Histidine kinase-like ATPase domain BER93_RS17430 PF01740 STAS domain BER93_RS17440 PF07158 BER93_RS17440 BER93_RS17445 PF00698 Acyl transferase domain BER93_RS17450 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BER93_RS17455 PF10620 BER93_RS17455 BER93_RS17460 PF06833 Malonate decarboxylase gamma subunit (MdcE) BER93_RS17465 PF01039 Carboxyl transferase domain BER93_RS17470 PF06857 BER93_RS17470 BER93_RS17480 PF04954 Siderophore-interacting protein BER93_RS17480 PF08021 Siderophore-interacting FAD-binding domain BER93_RS17490 PF04264 YceI-like domain BER93_RS17495 PF00881 Nitroreductase family BER93_RS17500 PF06258 BER93_RS17500 BER93_RS17505 PF02592 BER93_RS17505 BER93_RS17510 PF03710 Glutamate-ammonia ligase adenylyltransferase BER93_RS17510 PF08335 GlnD PII-uridylyltransferase BER93_RS17520 PF08450 SMP-30/Gluconolaconase/LRE-like region BER93_RS17530 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BER93_RS17530 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BER93_RS17540 PF00793 DAHP synthetase I family BER93_RS17560 PF00118 TCP-1/cpn60 chaperonin family BER93_RS17565 PF00166 Chaperonin 10 Kd subunit BER93_RS17580 PF03091 CutA1 divalent ion tolerance protein BER93_RS17585 PF02683 BER93_RS17585 BER93_RS17585 PF11412 Disulphide bond corrector protein DsbC BER93_RS17585 PF13899 Thioredoxin-like BER93_RS17600 PF01609 Transposase DDE domain BER93_RS17600 PF05598 BER93_RS17600 BER93_RS17605 PF01609 Transposase DDE domain BER93_RS17605 PF13340 BER93_RS17605 BER93_RS17615 PF00665 Integrase core domain BER93_RS17615 PF13276 BER93_RS17615 BER93_RS17620 PF01527 Transposase BER93_RS17625 PF13460 NADH(P)-binding BER93_RS17630 PF00128 Alpha amylase, catalytic domain BER93_RS17630 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_RS17635 PF11154 BER93_RS17635 BER93_RS17640 PF00128 Alpha amylase, catalytic domain BER93_RS17645 PF02446 4-alpha-glucanotransferase BER93_RS17650 PF00128 Alpha amylase, catalytic domain BER93_RS17650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_RS17650 PF11941 Domain of unknown function (DUF3459) BER93_RS17655 PF00128 Alpha amylase, catalytic domain BER93_RS17655 PF02806 Alpha amylase, C-terminal all-beta domain BER93_RS17655 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_RS17660 PF00534 Glycosyl transferases group 1 BER93_RS17660 PF08323 Starch synthase catalytic domain BER93_RS17665 PF00990 GGDEF domain BER93_RS17670 PF02638 BER93_RS17670 BER93_RS17675 PF05661 BER93_RS17675 BER93_RS17680 PF03109 BER93_RS17680 BER93_RS17685 PF00924 Mechanosensitive ion channel BER93_RS17685 PF12607 BER93_RS17685 BER93_RS17690 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BER93_RS17700 PF01040 UbiA prenyltransferase family BER93_RS17705 PF00156 Phosphoribosyl transferase domain BER93_RS17710 PF04055 Radical SAM superfamily BER93_RS17710 PF06968 Biotin and Thiamin Synthesis associated domain BER93_RS17715 PF00155 Aminotransferase class I and II BER93_RS17725 PF12697 Alpha/beta hydrolase family BER93_RS17730 PF00106 short chain dehydrogenase BER93_RS17730 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS17740 PF08241 Methyltransferase domain BER93_RS17745 PF05118 Aspartyl/Asparaginyl beta-hydroxylase BER93_RS17755 PF02698 DUF218 domain BER93_RS17760 PF00291 Pyridoxal-phosphate dependent enzyme BER93_RS17770 PF01134 Glucose inhibited division protein A BER93_RS17770 PF13932 GidA associated domain 3 BER93_RS17785 PF01163 RIO1 family BER93_RS17790 PF12146 Putative lysophospholipase BER93_RS17795 PF00455 BER93_RS17795 BER93_RS17795 PF08220 DeoR-like helix-turn-helix domain BER93_RS17800 PF01266 FAD dependent oxidoreductase BER93_RS17800 PF16901 BER93_RS17800 BER93_RS17805 PF00230 Major intrinsic protein BER93_RS17810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BER93_RS17810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BER93_RS17820 PF01527 Transposase BER93_RS17825 PF14246 AefR-like transcriptional repressor, C-terminal region BER93_RS17835 PF01432 Peptidase family M3 BER93_RS17845 PF01553 Acyltransferase BER93_RS17850 PF00472 RF-1 domain BER93_RS17855 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) BER93_RS17865 PF13899 Thioredoxin-like BER93_RS17880 PF03109 BER93_RS17880 BER93_RS17885 PF02036 SCP-2 sterol transfer family BER93_RS17895 PF07043 BER93_RS17895 BER93_RS17900 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BER93_RS17905 PF00501 AMP-binding enzyme BER93_RS17910 PF03692 BER93_RS17910 BER93_RS17915 PF00561 alpha/beta hydrolase fold BER93_RS17935 PF01521 Iron-sulphur cluster biosynthesis BER93_RS17940 PF04519 BER93_RS17940 BER93_RS17950 PF13548 BER93_RS17950 BER93_RS17955 PF00072 Response regulator receiver domain BER93_RS17955 PF00563 EAL domain BER93_RS17955 PF00990 GGDEF domain BER93_RS17960 PF00072 Response regulator receiver domain BER93_RS17960 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS17960 PF01627 Hpt domain BER93_RS17960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS17965 PF00210 Ferritin-like domain BER93_RS17970 PF04324 BFD-like [2Fe-2S] binding domain BER93_RS17975 PF00293 NUDIX domain BER93_RS17990 PF00380 Ribosomal protein S9/S16 BER93_RS17995 PF00572 Ribosomal protein L13 BER93_RS18000 PF03232 BER93_RS18000 BER93_RS18010 PF02675 S-adenosylmethionine decarboxylase BER93_RS18015 PF00027 Cyclic nucleotide-binding domain BER93_RS18015 PF00325 Bacterial regulatory proteins, crp family BER93_RS18020 PF12710 haloacid dehalogenase-like hydrolase BER93_RS18025 PF00218 Indole-3-glycerol phosphate synthase BER93_RS18030 PF00591 Glycosyl transferase family, a/b domain BER93_RS18030 PF02885 Glycosyl transferase family, helical bundle domain BER93_RS18040 PF00117 Glutamine amidotransferase class-I BER93_RS18060 PF00266 Aminotransferase class-V BER93_RS18065 PF01053 Cys/Met metabolism PLP-dependent enzyme BER93_RS18070 PF00487 BER93_RS18070 BER93_RS18075 PF07722 Peptidase C26 BER93_RS18080 PF01810 BER93_RS18080 BER93_RS18085 PF04204 Homoserine O-succinyltransferase BER93_RS18090 PF00120 Glutamine synthetase, catalytic domain BER93_RS18095 PF00425 chorismate binding enzyme BER93_RS18095 PF04715 Anthranilate synthase component I, N terminal region BER93_RS18100 PF00781 Diacylglycerol kinase catalytic domain BER93_RS18105 PF00583 Acetyltransferase (GNAT) family BER93_RS18110 PF00834 Ribulose-phosphate 3 epimerase family BER93_RS18115 PF13505 Outer membrane protein beta-barrel domain BER93_RS18120 PF00226 DnaJ domain BER93_RS18125 PF01259 SAICAR synthetase BER93_RS18135 PF01609 Transposase DDE domain BER93_RS18140 PF06127 BER93_RS18140 BER93_RS18150 PF01609 Transposase DDE domain BER93_RS18155 PF01370 NAD dependent epimerase/dehydratase family BER93_RS18160 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_RS18160 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BER93_RS18160 PF04039 BER93_RS18160 BER93_RS18160 PF13244 BER93_RS18160 BER93_RS18165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BER93_RS18170 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_RS18175 PF01899 BER93_RS18175 BER93_RS18180 PF04066 BER93_RS18180 BER93_RS18185 PF03334 BER93_RS18185 BER93_RS18190 PF01609 Transposase DDE domain BER93_RS18190 PF05598 BER93_RS18190 BER93_RS18195 PF13419 Haloacid dehalogenase-like hydrolase BER93_RS18200 PF13202 EF hand BER93_RS18205 PF13202 EF hand BER93_RS18215 PF14255 BER93_RS18215 BER93_RS18220 PF01427 D-ala-D-ala dipeptidase BER93_RS18225 PF01510 N-acetylmuramoyl-L-alanine amidase BER93_RS18230 PF00877 NlpC/P60 family BER93_RS18230 PF12913 SH3 domain of the SH3b1 type BER93_RS18230 PF12914 SH3 domain of SH3b2 type BER93_RS18235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BER93_RS18235 PF13378 Enolase C-terminal domain-like BER93_RS18245 PF13520 Amino acid permease BER93_RS18265 PF07995 Glucose / Sorbosone dehydrogenase BER93_RS18270 PF00933 Glycosyl hydrolase family 3 N terminal domain BER93_RS18270 PF01915 Glycosyl hydrolase family 3 C-terminal domain BER93_RS18270 PF14310 Fibronectin type III-like domain BER93_RS18275 PF02152 Dihydroneopterin aldolase BER93_RS18280 PF00814 Glycoprotease family BER93_RS18285 PF01165 Ribosomal protein S21 BER93_RS18290 PF09424 Yqey-like protein BER93_RS18295 PF03631 BER93_RS18295 BER93_RS18300 PF01807 CHC2 zinc finger BER93_RS18300 PF08275 DNA primase catalytic core, N-terminal domain BER93_RS18300 PF08278 DNA primase DnaG DnaB-binding BER93_RS18300 PF10410 DnaB-helicase binding domain of primase BER93_RS18300 PF13155 Toprim-like BER93_RS18305 PF13593 SBF-like CPA transporter family (DUF4137) BER93_RS18315 PF01040 UbiA prenyltransferase family BER93_RS18320 PF02628 BER93_RS18320 BER93_RS18330 PF02104 BER93_RS18330 BER93_RS18335 PF11137 BER93_RS18335 BER93_RS18340 PF00510 Cytochrome c oxidase subunit III BER93_RS18345 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BER93_RS18350 PF00115 Cytochrome C and Quinol oxidase polypeptide I BER93_RS18355 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BER93_RS18355 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BER93_RS18360 PF10003 BER93_RS18360 BER93_RS18365 PF00171 Aldehyde dehydrogenase family BER93_RS18365 PF01619 Proline dehydrogenase BER93_RS18365 PF14850 DNA-binding domain of Proline dehydrogenase BER93_RS18370 PF00579 tRNA synthetases class I (W and Y) BER93_RS18375 PF01551 Peptidase family M23 BER93_RS18375 PF04225 Opacity-associated protein A LysM-like domain BER93_RS18380 PF03702 Uncharacterised protein family (UPF0075) BER93_RS18390 PF07690 Major Facilitator Superfamily BER93_RS18400 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_RS18405 PF00156 Phosphoribosyl transferase domain BER93_RS18415 PF13614 AAA domain BER93_RS18420 PF02195 ParB-like nuclease domain BER93_RS18435 PF01370 NAD dependent epimerase/dehydratase family BER93_RS18440 PF00535 Glycosyl transferase family 2 BER93_RS18445 PF07578 Lipid A Biosynthesis N-terminal domain BER93_RS18455 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BER93_RS18455 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BER93_RS18455 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BER93_RS18455 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BER93_RS18460 PF00692 dUTPase BER93_RS18465 PF02441 Flavoprotein BER93_RS18465 PF04127 DNA / pantothenate metabolism flavoprotein BER93_RS18470 PF04002 RadC-like JAB domain BER93_RS18475 PF00750 tRNA synthetases class I (R) BER93_RS18475 PF03485 Arginyl tRNA synthetase N terminal domain BER93_RS18475 PF05746 DALR anticodon binding domain BER93_RS18480 PF05036 Sporulation related domain BER93_RS18485 PF00106 short chain dehydrogenase BER93_RS18515 PF03033 Glycosyltransferase family 28 N-terminal domain BER93_RS18520 PF00501 AMP-binding enzyme BER93_RS18520 PF00550 Phosphopantetheine attachment site BER93_RS18520 PF00668 Condensation domain BER93_RS18520 PF00975 Thioesterase domain BER93_RS18520 PF13193 AMP-binding enzyme C-terminal domain BER93_RS18525 PF01609 Transposase DDE domain BER93_RS18525 PF05598 BER93_RS18525 BER93_RS18530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS18535 PF00072 Response regulator receiver domain BER93_RS18535 PF00486 Transcriptional regulatory protein, C terminal BER93_RS18545 PF01207 Dihydrouridine synthase (Dus) BER93_RS18550 PF01609 Transposase DDE domain BER93_RS18560 PF12796 Ankyrin repeats (3 copies) BER93_RS18565 PF00199 Catalase BER93_RS18565 PF06628 Catalase-related immune-responsive BER93_RS18570 PF13307 Helicase C-terminal domain BER93_RS18580 PF01488 Shikimate / quinate 5-dehydrogenase BER93_RS18580 PF08501 Shikimate dehydrogenase substrate binding domain BER93_RS18590 PF00175 Oxidoreductase NAD-binding domain BER93_RS18590 PF00258 Flavodoxin BER93_RS18590 PF03929 BER93_RS18590 BER93_RS18595 PF00490 Delta-aminolevulinic acid dehydratase BER93_RS18610 PF05598 BER93_RS18610 BER93_RS18635 PF02673 BER93_RS18635 BER93_RS18640 PF00120 Glutamine synthetase, catalytic domain BER93_RS18640 PF03951 Glutamine synthetase, beta-Grasp domain BER93_RS18645 PF00543 Nitrogen regulatory protein P-II BER93_RS18650 PF00909 Ammonium Transporter Family BER93_RS18655 PF00512 His Kinase A (phospho-acceptor) domain BER93_RS18655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_RS18655 PF08448 PAS fold BER93_RS18660 PF00072 Response regulator receiver domain BER93_RS18660 PF00158 Sigma-54 interaction domain BER93_RS18660 PF02954 Bacterial regulatory protein, Fis family BER93_RS18665 PF00080 Copper/zinc superoxide dismutase (SODC) BER93_RS18670 PF00080 Copper/zinc superoxide dismutase (SODC) BER93_RS18680 PF13340 BER93_RS18680 BER93_RS18685 PF13432 Tetratricopeptide repeat BER93_RS18695 PF12697 Alpha/beta hydrolase family BER93_RS18700 PF01553 Acyltransferase BER93_RS18705 PF03061 Thioesterase superfamily BER93_RS18710 PF13091 PLD-like domain BER93_RS18715 PF04264 YceI-like domain BER93_RS18720 PF00300 Histidine phosphatase superfamily (branch 1) BER93_RS18725 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_RS18735 PF03547 BER93_RS18735 BER93_RS18745 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BER93_RS18750 PF11625 Protein of unknown function (DUF3253) BER93_RS18755 PF10017 BER93_RS18755 BER93_RS18760 PF03781 Sulfatase-modifying factor enzyme 1 BER93_RS18760 PF12867 DinB superfamily BER93_RS18765 PF00266 Aminotransferase class-V BER93_RS18770 PF00528 Binding-protein-dependent transport system inner membrane component BER93_RS18770 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BER93_RS18775 PF00005 ABC transporter BER93_RS18780 PF13202 EF hand BER93_RS18785 PF00005 ABC transporter BER93_RS18790 PF01037 AsnC family BER93_RS18790 PF13404 AsnC-type helix-turn-helix domain BER93_RS18795 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BER93_RS18800 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_RS18805 PF04962 KduI/IolB family BER93_RS18815 PF00356 Bacterial regulatory proteins, lacI family BER93_RS18815 PF13377 Periplasmic binding protein-like domain BER93_RS18830 PF03480 Bacterial extracellular solute-binding protein, family 7 BER93_RS18840 PF07859 alpha/beta hydrolase fold BER93_RS18845 PF00135 Carboxylesterase family BER93_RS18850 PF00248 Aldo/keto reductase family BER93_RS18855 PF00128 Alpha amylase, catalytic domain BER93_RS18855 PF02806 Alpha amylase, C-terminal all-beta domain BER93_RS18855 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_RS18860 PF00128 Alpha amylase, catalytic domain BER93_RS18860 PF16657 BER93_RS18860 BER93_RS18865 PF00128 Alpha amylase, catalytic domain BER93_RS18865 PF11896 Domain of unknown function (DUF3416) BER93_RS18920 PF01609 Transposase DDE domain BER93_RS18925 PF13340 BER93_RS18925 BER93_RS18935 PF00150 Cellulase (glycosyl hydrolase family 5) BER93_RS18945 PF00150 Cellulase (glycosyl hydrolase family 5) BER93_RS18950 PF00107 Zinc-binding dehydrogenase BER93_RS18950 PF08240 Alcohol dehydrogenase GroES-like domain BER93_RS18955 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_RS18955 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BER93_RS18960 PF00310 Glutamine amidotransferases class-II BER93_RS18960 PF01493 GXGXG motif BER93_RS18960 PF01645 Conserved region in glutamate synthase BER93_RS18960 PF04898 Glutamate synthase central domain BER93_RS18965 PF11720 Peptidase inhibitor I78 family BER93_RS18970 PF12760 Transposase zinc-ribbon domain BER93_RS18975 PF02092 BER93_RS18975 BER93_RS18975 PF05746 DALR anticodon binding domain BER93_RS18980 PF02091 Glycyl-tRNA synthetase alpha subunit BER93_RS18985 PF00437 Type II/IV secretion system protein BER93_RS18985 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BER93_RS18990 PF00117 Glutamine amidotransferase class-I BER93_RS19000 PF00902 Sec-independent protein translocase protein (TatC) BER93_RS19005 PF02416 mttA/Hcf106 family BER93_RS19010 PF02416 mttA/Hcf106 family BER93_RS19015 PF04366 BER93_RS19015 BER93_RS19020 PF00762 Ferrochelatase BER93_RS19025 PF00561 alpha/beta hydrolase fold BER93_RS19030 PF01863 Protein of unknown function DUF45 BER93_RS19035 PF04381 Putative exonuclease, RdgC BER93_RS19040 PF01171 PP-loop family BER93_RS19050 PF00356 Bacterial regulatory proteins, lacI family BER93_RS19050 PF13377 Periplasmic binding protein-like domain BER93_RS19060 PF07488 Glycosyl hydrolase family 67 middle domain BER93_RS19075 PF13333 BER93_RS19075 BER93_RS19080 PF00665 Integrase core domain BER93_RS19080 PF13276 BER93_RS19080 BER93_RS19085 PF01527 Transposase BER93_RS19090 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) BER93_RS19100 PF01609 Transposase DDE domain BER93_RS19100 PF13340 BER93_RS19100 BER93_RS19110 PF01126 Heme oxygenase BER93_RS19125 PF01263 Aldose 1-epimerase BER93_RS19125 PF01471 Putative peptidoglycan binding domain BER93_RS19125 PF13406 Transglycosylase SLT domain BER93_RS19140 PF01925 BER93_RS19140 BER93_RS19150 PF09983 BER93_RS19150 BER93_RS19150 PF11795 BER93_RS19150 BER93_RS19165 PF13835 BER93_RS19165 BER93_RS19170 PF11855 BER93_RS19170 BER93_RS19175 PF01609 Transposase DDE domain BER93_RS19180 PF01227 GTP cyclohydrolase I BER93_RS19185 PF00083 Sugar (and other) transporter BER93_RS19205 PF05016 Plasmid stabilisation system protein BER93_RS19210 PF13276 BER93_RS19210 BER93_RS19210 PF13683 BER93_RS19210 BER93_RS19215 PF01609 Transposase DDE domain BER93_RS19215 PF05598 BER93_RS19215 BER93_RS19220 PF05598 BER93_RS19220 BER93_RS19230 PF01381 Helix-turn-helix BER93_RS19235 PF05015 Plasmid maintenance system killer protein BER93_RS19240 PF13538 UvrD-like helicase C-terminal domain BER93_RS19240 PF13604 AAA domain BER93_RS19245 PF00580 UvrD/REP helicase N-terminal domain BER93_RS19245 PF12705 PD-(D/E)XK nuclease superfamily BER93_RS19245 PF13361 UvrD-like helicase C-terminal domain BER93_RS19250 PF04257 Exodeoxyribonuclease V, gamma subunit BER93_RS19255 PF00005 ABC transporter BER93_RS19260 PF02405 BER93_RS19260 BER93_RS19265 PF02470 BER93_RS19265 BER93_RS19270 PF05494 Toluene tolerance, Ttg2 BER93_RS19275 PF13466 STAS domain BER93_RS19280 PF04333 BER93_RS19280 BER93_RS19290 PF00255 Glutathione peroxidase BER93_RS19300 PF02646 BER93_RS19300 BER93_RS19310 PF13520 Amino acid permease BER93_RS19320 PF00990 GGDEF domain BER93_RS19320 PF08448 PAS fold BER93_RS19325 PF02595 Glycerate kinase family BER93_RS19330 PF07690 Major Facilitator Superfamily BER93_RS19340 PF10672 S-adenosylmethionine-dependent methyltransferase BER93_RS19345 PF03741 BER93_RS19345 BER93_RS19350 PF03009 Glycerophosphoryl diester phosphodiesterase family BER93_RS19355 PF01527 Transposase BER93_RS19365 PF01926 50S ribosome-binding GTPase BER93_RS19365 PF10396 GTP-binding protein TrmE N-terminus BER93_RS19365 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE BER93_RS19370 PF02096 60Kd inner membrane protein BER93_RS19370 PF14849 YidC periplasmic domain BER93_RS19375 PF00825 Ribonuclease P BER93_RS19380 PF00468 Ribosomal protein L34 BER93_RS19430 PF01751 Toprim domain BER93_RS19535 PF08850 BER93_RS19535 BER93_RS19540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_RS19560 PF00308 Bacterial dnaA protein BER93_RS19560 PF08299 Bacterial dnaA protein helix-turn-helix BER93_RS19560 PF11638 DnaA N-terminal domain BER93_RS19655 PF02472 Biopolymer transport protein ExbD/TolR