BER93_RS00005 SM00382 ATPases associated with a variety of cellular activities BER93_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain BER93_RS00010 SM00480 DNA polymerase III beta subunit BER93_RS00025 SM00387 Histidine kinase-like ATPases BER93_RS00025 SM00433 TopoisomeraseII BER93_RS00040 SM00028 Tetratricopeptide repeats BER93_RS00085 SM00155 Phospholipase D. Active site motifs. BER93_RS00120 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER93_RS00120 SM00245 tail specific protease BER93_RS00200 SM00487 DEAD-like helicases superfamily BER93_RS00200 SM00490 helicase superfamily c-terminal domain BER93_RS00220 SM00986 Uracil DNA glycosylase superfamily BER93_RS00220 SM00987 UreE urease accessory protein, C-terminal domain BER93_RS00225 SM00448 cheY-homologous receiver domain BER93_RS00235 SM00382 ATPases associated with a variety of cellular activities BER93_RS00240 SM00487 DEAD-like helicases superfamily BER93_RS00240 SM00490 helicase superfamily c-terminal domain BER93_RS00250 SM00357 Cold shock protein domain BER93_RS00250 SM00382 ATPases associated with a variety of cellular activities BER93_RS00250 SM00959 Rho termination factor, N-terminal domain BER93_RS00280 SM00257 Lysin motif BER93_RS00320 SM01150 BER93_RS00320 BER93_RS00400 SM00563 Phosphate acyltransferases BER93_RS00405 SM00829 Enoylreductase BER93_RS00510 SM00487 DEAD-like helicases superfamily BER93_RS00510 SM00490 helicase superfamily c-terminal domain BER93_RS00520 SM00326 Src homology 3 domains BER93_RS00525 SM00861 Transketolase, pyrimidine binding domain BER93_RS00555 SM00347 helix_turn_helix multiple antibiotic resistance protein BER93_RS00605 SM00382 ATPases associated with a variety of cellular activities BER93_RS00625 SM00382 ATPases associated with a variety of cellular activities BER93_RS00985 SM00257 Lysin motif BER93_RS01010 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BER93_RS01010 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BER93_RS01010 SM00493 BER93_RS01010 BER93_RS01065 SM00564 beta-propeller repeat BER93_RS01085 SM00387 Histidine kinase-like ATPases BER93_RS01085 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS01085 SM00448 cheY-homologous receiver domain BER93_RS01095 SM00346 helix_turn_helix isocitrate lyase regulation BER93_RS01110 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BER93_RS01135 SM00421 helix_turn_helix, Lux Regulon BER93_RS01135 SM00448 cheY-homologous receiver domain BER93_RS01210 SM00155 Phospholipase D. Active site motifs. BER93_RS01380 SM01060 BER93_RS01380 BER93_RS01415 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER93_RS01435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER93_RS01435 SM00387 Histidine kinase-like ATPases BER93_RS01435 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS01440 SM00448 cheY-homologous receiver domain BER93_RS01440 SM00862 Transcriptional regulatory protein, C terminal BER93_RS01550 SM00052 Putative diguanylate phosphodiesterase BER93_RS01565 SM00382 ATPases associated with a variety of cellular activities BER93_RS01575 SM00938 Nitrogen regulatory protein P-II BER93_RS01630 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BER93_RS01630 SM00474 3'-5' exonuclease BER93_RS01630 SM00475 5'-3' exonuclease BER93_RS01630 SM00482 DNA polymerase A domain BER93_RS01685 SM00563 Phosphate acyltransferases BER93_RS01720 SM00822 BER93_RS01720 BER93_RS01740 SM00825 Beta-ketoacyl synthase BER93_RS01750 SM00248 ankyrin repeats BER93_RS01755 SM00226 Low molecular weight phosphatase family BER93_RS01775 SM01057 Eukaryotic-type carbonic anhydrase BER93_RS01780 SM00116 Domain in cystathionine beta-synthase and other proteins. BER93_RS01780 SM00924 MgtE intracellular N domain BER93_RS01785 SM00881 CoA binding domain BER93_RS01825 SM00487 DEAD-like helicases superfamily BER93_RS01825 SM00490 helicase superfamily c-terminal domain BER93_RS02080 SM00450 Rhodanese Homology Domain BER93_RS02150 SM00967 RNA 2'-O ribose methyltransferase substrate binding BER93_RS02180 SM00838 Elongation factor G C-terminus BER93_RS02230 SM00829 Enoylreductase BER93_RS02275 SM00382 ATPases associated with a variety of cellular activities BER93_RS02285 SM00829 Enoylreductase BER93_RS02300 SM00855 Phosphoglycerate mutase family BER93_RS02315 SM00528 Domain in histone-like proteins of HNS family BER93_RS02320 SM00642 Alpha-amylase domain BER93_RS02345 SM00448 cheY-homologous receiver domain BER93_RS02345 SM00862 Transcriptional regulatory protein, C terminal BER93_RS02350 SM00387 Histidine kinase-like ATPases BER93_RS02350 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS02455 SM00829 Enoylreductase BER93_RS02570 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER93_RS02570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER93_RS02570 SM00091 PAS domain BER93_RS02570 SM00267 diguanylate cyclase BER93_RS02585 SM00637 BER93_RS02585 BER93_RS02615 SM00448 cheY-homologous receiver domain BER93_RS02615 SM00850 LytTr DNA-binding domain BER93_RS02690 SM00382 ATPases associated with a variety of cellular activities BER93_RS02690 SM01086 C-terminal, D2-small domain, of ClpB protein BER93_RS02720 SM00267 diguanylate cyclase BER93_RS02725 SM01263 BER93_RS02725 BER93_RS02745 SM00268 Actin BER93_RS02770 SM00710 Parallel beta-helix repeats BER93_RS02785 SM00936 Penicillin-binding protein 5, C-terminal domain BER93_RS02805 SM00729 Elongator protein 3, MiaB family, Radical SAM BER93_RS02830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER93_RS02830 SM00245 tail specific protease BER93_RS02875 SM01350 BER93_RS02875 BER93_RS02885 SM00749 bacterial OsmY and nodulation domain BER93_RS02890 SM00387 Histidine kinase-like ATPases BER93_RS02890 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS02895 SM00448 cheY-homologous receiver domain BER93_RS02900 SM00387 Histidine kinase-like ATPases BER93_RS02900 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS02900 SM00448 cheY-homologous receiver domain BER93_RS02955 SM00345 helix_turn_helix gluconate operon transcriptional repressor BER93_RS02955 SM00866 BER93_RS02955 BER93_RS02965 SM00354 helix_turn _helix lactose operon repressor BER93_RS02990 SM00829 Enoylreductase BER93_RS03080 SM00450 Rhodanese Homology Domain BER93_RS03105 SM00382 ATPases associated with a variety of cellular activities BER93_RS03135 SM01154 BER93_RS03135 BER93_RS03140 SM00642 Alpha-amylase domain BER93_RS03155 SM00354 helix_turn _helix lactose operon repressor BER93_RS03160 SM00822 BER93_RS03160 BER93_RS03175 SM00448 cheY-homologous receiver domain BER93_RS03175 SM00862 Transcriptional regulatory protein, C terminal BER93_RS03180 SM00387 Histidine kinase-like ATPases BER93_RS03180 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS03190 SM00421 helix_turn_helix, Lux Regulon BER93_RS03190 SM00448 cheY-homologous receiver domain BER93_RS03225 SM00387 Histidine kinase-like ATPases BER93_RS03225 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS03225 SM00448 cheY-homologous receiver domain BER93_RS03240 SM00919 Malic enzyme, NAD binding domain BER93_RS03240 SM01274 BER93_RS03240 BER93_RS03305 SM01329 BER93_RS03305 BER93_RS03320 SM00917 LeuA allosteric (dimerisation) domain BER93_RS03365 SM00862 Transcriptional regulatory protein, C terminal BER93_RS03375 SM00342 helix_turn_helix, arabinose operon control protein BER93_RS03435 SM00464 Found in ATP-dependent protease La (LON) BER93_RS03540 SM01011 Aminopeptidase P, N-terminal domain BER93_RS03560 SM00729 Elongator protein 3, MiaB family, Radical SAM BER93_RS03580 SM00072 Guanylate kinase homologues. BER93_RS03585 SM01409 BER93_RS03585 BER93_RS03590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER93_RS03590 SM00954 Region found in RelA / SpoT proteins BER93_RS03600 SM00487 DEAD-like helicases superfamily BER93_RS03600 SM00490 helicase superfamily c-terminal domain BER93_RS03655 SM00965 Secretin and TonB N terminus short domain BER93_RS03795 SM00842 Cell division protein FtsA BER93_RS03800 SM00864 Tubulin/FtsZ family, GTPase domain BER93_RS03800 SM00865 Tubulin/FtsZ family, C-terminal domain BER93_RS03820 SM00957 SecA DEAD-like domain BER93_RS03820 SM00958 SecA preprotein cross-linking domain BER93_RS03850 SM00829 Enoylreductase BER93_RS03925 SM00382 ATPases associated with a variety of cellular activities BER93_RS03925 SM00448 cheY-homologous receiver domain BER93_RS03930 SM00387 Histidine kinase-like ATPases BER93_RS03930 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS03940 SM00881 CoA binding domain BER93_RS03965 SM00564 beta-propeller repeat BER93_RS04070 SM00363 S4 RNA-binding domain BER93_RS04075 SM00448 cheY-homologous receiver domain BER93_RS04085 SM00341 Helicase and RNase D C-terminal BER93_RS04085 SM00487 DEAD-like helicases superfamily BER93_RS04085 SM00490 helicase superfamily c-terminal domain BER93_RS04085 SM00956 BER93_RS04085 BER93_RS04095 SM00382 ATPases associated with a variety of cellular activities BER93_RS04095 SM00487 DEAD-like helicases superfamily BER93_RS04095 SM00490 helicase superfamily c-terminal domain BER93_RS04095 SM00847 Helicase associated domain (HA2) Add an annotation BER93_RS04120 SM00954 Region found in RelA / SpoT proteins BER93_RS04145 SM00491 BER93_RS04145 BER93_RS04165 SM00448 cheY-homologous receiver domain BER93_RS04170 SM00448 cheY-homologous receiver domain BER93_RS04175 SM00260 Two component signalling adaptor domain BER93_RS04180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER93_RS04185 SM00073 Histidine Phosphotransfer domain BER93_RS04185 SM00260 Two component signalling adaptor domain BER93_RS04185 SM00387 Histidine kinase-like ATPases BER93_RS04185 SM00448 cheY-homologous receiver domain BER93_RS04185 SM01231 BER93_RS04185 BER93_RS04220 SM00369 Leucine-rich repeats, typical (most populated) subfamily BER93_RS04235 SM00812 Alpha-L-fucosidase BER93_RS04275 SM00860 SMI1 / KNR4 family BER93_RS04335 SM01211 BER93_RS04335 BER93_RS04355 SM00382 ATPases associated with a variety of cellular activities BER93_RS04415 SM00345 helix_turn_helix gluconate operon transcriptional repressor BER93_RS04415 SM00866 BER93_RS04415 BER93_RS04470 SM00382 ATPases associated with a variety of cellular activities BER93_RS04555 SM00996 S-adenosyl-L-homocysteine hydrolase BER93_RS04555 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BER93_RS04625 SM00387 Histidine kinase-like ATPases BER93_RS04625 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS04630 SM00448 cheY-homologous receiver domain BER93_RS04630 SM00862 Transcriptional regulatory protein, C terminal BER93_RS04640 SM00382 ATPases associated with a variety of cellular activities BER93_RS04735 SM00650 Ribosomal RNA adenine dimethylases BER93_RS04855 SM00421 helix_turn_helix, Lux Regulon BER93_RS04915 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BER93_RS04915 SM00475 5'-3' exonuclease BER93_RS05015 SM00852 Probable molybdopterin binding domain BER93_RS05020 SM00028 Tetratricopeptide repeats BER93_RS05025 SM00937 BER93_RS05025 BER93_RS05035 SM00028 Tetratricopeptide repeats BER93_RS05055 SM01400 BER93_RS05055 BER93_RS05105 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BER93_RS05105 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BER93_RS05110 SM00649 Ribosomal protein L11/L12 BER93_RS05135 SM00663 RNA polymerase I subunit A N-terminus BER93_RS05150 SM00838 Elongation factor G C-terminus BER93_RS05150 SM00889 Elongation factor G, domain IV BER93_RS05160 SM01403 BER93_RS05160 BER93_RS05180 SM01382 BER93_RS05180 BER93_RS05180 SM01383 BER93_RS05180 BER93_RS05195 SM00322 K homology RNA-binding domain BER93_RS05215 SM01374 BER93_RS05215 BER93_RS05220 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BER93_RS05280 SM00363 S4 RNA-binding domain BER93_RS05280 SM01390 BER93_RS05280 BER93_RS05285 SM00662 RNA polymerases D BER93_RS05375 SM00869 Autotransporter beta-domain BER93_RS05410 SM00530 Helix-turn-helix XRE-family like proteins BER93_RS05445 SM00267 diguanylate cyclase BER93_RS05515 SM00530 Helix-turn-helix XRE-family like proteins BER93_RS05545 SM00382 ATPases associated with a variety of cellular activities BER93_RS05620 SM00855 Phosphoglycerate mutase family BER93_RS05660 SM00052 Putative diguanylate phosphodiesterase BER93_RS05665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER93_RS05800 SM00116 Domain in cystathionine beta-synthase and other proteins. BER93_RS05870 SM00867 YceI-like domain BER93_RS05880 SM00867 YceI-like domain BER93_RS05885 SM00387 Histidine kinase-like ATPases BER93_RS05885 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS05885 SM00448 cheY-homologous receiver domain BER93_RS05910 SM00382 ATPases associated with a variety of cellular activities BER93_RS05910 SM00962 SRP54-type protein, GTPase domain BER93_RS05910 SM00963 SRP54-type protein, helical bundle domain BER93_RS05955 SM00363 S4 RNA-binding domain BER93_RS05985 SM00267 diguanylate cyclase BER93_RS06000 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BER93_RS06025 SM00873 B3/4 domain BER93_RS06025 SM00874 tRNA synthetase B5 domain BER93_RS06025 SM00896 Ferredoxin-fold anticodon binding domain BER93_RS06030 SM00411 bacterial (prokaryotic) histone like domain BER93_RS06035 SM00422 helix_turn_helix, mercury resistance BER93_RS06110 SM00861 Transketolase, pyrimidine binding domain BER93_RS06120 SM00507 HNH nucleases BER93_RS06195 SM00478 endonuclease III BER93_RS06200 SM00382 ATPases associated with a variety of cellular activities BER93_RS06200 SM00962 SRP54-type protein, GTPase domain BER93_RS06200 SM00963 SRP54-type protein, helical bundle domain BER93_RS06205 SM00342 helix_turn_helix, arabinose operon control protein BER93_RS06230 SM01130 BER93_RS06230 BER93_RS06290 SM00944 Pro-kumamolisin, activation domain BER93_RS06370 SM00481 DNA polymerase alpha chain like domain BER93_RS06410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER93_RS06465 SM00972 Spore Coat Protein U domain BER93_RS06480 SM00972 Spore Coat Protein U domain BER93_RS06490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER93_RS06510 SM01172 BER93_RS06510 BER93_RS06515 SM00710 Parallel beta-helix repeats BER93_RS06515 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BER93_RS06545 SM00434 DNA Topoisomerase IV BER93_RS06550 SM00347 helix_turn_helix multiple antibiotic resistance protein BER93_RS06605 SM00347 helix_turn_helix multiple antibiotic resistance protein BER93_RS06630 SM00382 ATPases associated with a variety of cellular activities BER93_RS06640 SM00947 Carbonic anhydrase BER93_RS06660 SM00357 Cold shock protein domain BER93_RS06760 SM00530 Helix-turn-helix XRE-family like proteins BER93_RS06810 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER93_RS06855 SM00116 Domain in cystathionine beta-synthase and other proteins. BER93_RS06855 SM01091 Transporter associated domain BER93_RS06875 SM00729 Elongator protein 3, MiaB family, Radical SAM BER93_RS06920 SM00487 DEAD-like helicases superfamily BER93_RS06920 SM00490 helicase superfamily c-terminal domain BER93_RS06940 SM00528 Domain in histone-like proteins of HNS family BER93_RS06955 SM00474 3'-5' exonuclease BER93_RS06975 SM00838 Elongation factor G C-terminus BER93_RS06990 SM00358 Double-stranded RNA binding motif BER93_RS06990 SM00535 Ribonuclease III family BER93_RS07005 SM00448 cheY-homologous receiver domain BER93_RS07015 SM01118 BER93_RS07015 BER93_RS07045 SM00357 Cold shock protein domain BER93_RS07055 SM00487 DEAD-like helicases superfamily BER93_RS07055 SM00490 helicase superfamily c-terminal domain BER93_RS07110 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BER93_RS07145 SM00257 Lysin motif BER93_RS07225 SM00052 Putative diguanylate phosphodiesterase BER93_RS07225 SM00267 diguanylate cyclase BER93_RS07225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER93_RS07240 SM00822 BER93_RS07240 BER93_RS07285 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BER93_RS07290 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER93_RS07340 SM00316 Ribosomal protein S1-like RNA-binding domain BER93_RS07340 SM00322 K homology RNA-binding domain BER93_RS07360 SM01387 BER93_RS07360 BER93_RS07365 SM00316 Ribosomal protein S1-like RNA-binding domain BER93_RS07365 SM00322 K homology RNA-binding domain BER93_RS07395 SM01001 AIR carboxylase BER93_RS07460 SM00448 cheY-homologous receiver domain BER93_RS07460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER93_RS07465 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER93_RS07465 SM00091 PAS domain BER93_RS07465 SM00387 Histidine kinase-like ATPases BER93_RS07465 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS07465 SM00448 cheY-homologous receiver domain BER93_RS07465 SM01079 BER93_RS07465 BER93_RS07520 SM00267 diguanylate cyclase BER93_RS07520 SM00448 cheY-homologous receiver domain BER93_RS07530 SM01230 BER93_RS07530 BER93_RS07535 SM01230 BER93_RS07535 BER93_RS07560 SM00382 ATPases associated with a variety of cellular activities BER93_RS07585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER93_RS07585 SM00091 PAS domain BER93_RS07585 SM00911 HWE histidine kinase BER93_RS07715 SM00487 DEAD-like helicases superfamily BER93_RS07715 SM00490 helicase superfamily c-terminal domain BER93_RS07770 SM00382 ATPases associated with a variety of cellular activities BER93_RS07835 SM00382 ATPases associated with a variety of cellular activities BER93_RS07920 SM00530 Helix-turn-helix XRE-family like proteins BER93_RS08005 SM00271 DnaJ molecular chaperone homology domain BER93_RS08050 SM00382 ATPases associated with a variety of cellular activities BER93_RS08075 SM00861 Transketolase, pyrimidine binding domain BER93_RS08085 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BER93_RS08145 SM00382 ATPases associated with a variety of cellular activities BER93_RS08150 SM00345 helix_turn_helix gluconate operon transcriptional repressor BER93_RS08170 SM00984 UDP binding domain BER93_RS08190 SM00354 helix_turn _helix lactose operon repressor BER93_RS08210 SM01018 B12 binding domain BER93_RS08220 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BER93_RS08240 SM00316 Ribosomal protein S1-like RNA-binding domain BER93_RS08240 SM00357 Cold shock protein domain BER93_RS08240 SM00955 BER93_RS08240 BER93_RS08245 SM00967 RNA 2'-O ribose methyltransferase substrate binding BER93_RS08255 SM00479 BER93_RS08255 BER93_RS08265 SM00382 ATPases associated with a variety of cellular activities BER93_RS08310 SM00947 Carbonic anhydrase BER93_RS08320 SM00478 endonuclease III BER93_RS08345 SM00450 Rhodanese Homology Domain BER93_RS08355 SM00644 BER93_RS08355 BER93_RS08380 SM00981 BER93_RS08380 BER93_RS08410 SM00479 BER93_RS08410 BER93_RS08435 SM00947 Carbonic anhydrase BER93_RS08485 SM00968 SMC proteins Flexible Hinge Domain BER93_RS08490 SM00771 ZipA, C-terminal domain (FtsZ-binding) BER93_RS08495 SM00292 breast cancer carboxy-terminal domain BER93_RS08495 SM00532 Ligase N family BER93_RS08520 SM00434 DNA Topoisomerase IV BER93_RS08560 SM00345 helix_turn_helix gluconate operon transcriptional repressor BER93_RS08560 SM00866 BER93_RS08560 BER93_RS08575 SM00240 Forkhead associated domain BER93_RS08615 SM00859 Semialdehyde dehydrogenase, NAD binding domain BER93_RS08625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER93_RS08625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER93_RS08630 SM00382 ATPases associated with a variety of cellular activities BER93_RS08635 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER93_RS08635 SM00091 PAS domain BER93_RS08635 SM00387 Histidine kinase-like ATPases BER93_RS08635 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS08635 SM00448 cheY-homologous receiver domain BER93_RS08725 SM00116 Domain in cystathionine beta-synthase and other proteins. BER93_RS08725 SM01091 Transporter associated domain BER93_RS08750 SM00387 Histidine kinase-like ATPases BER93_RS08750 SM00433 TopoisomeraseII BER93_RS08770 SM01192 BER93_RS08770 BER93_RS08770 SM01193 BER93_RS08770 BER93_RS08795 SM00463 Small MutS-related domain BER93_RS08815 SM00257 Lysin motif BER93_RS08905 SM00382 ATPases associated with a variety of cellular activities BER93_RS08930 SM00363 S4 RNA-binding domain BER93_RS08955 SM00354 helix_turn _helix lactose operon repressor BER93_RS09030 SM00316 Ribosomal protein S1-like RNA-binding domain BER93_RS09035 SM00411 bacterial (prokaryotic) histone like domain BER93_RS09045 SM00028 Tetratricopeptide repeats BER93_RS09055 SM00822 BER93_RS09055 BER93_RS09105 SM00116 Domain in cystathionine beta-synthase and other proteins. BER93_RS09105 SM01240 BER93_RS09105 BER93_RS09290 SM01007 Class II Aldolase and Adducin N-terminal domain BER93_RS09330 SM00841 Elongation factor P, C-terminal BER93_RS09330 SM01185 BER93_RS09330 BER93_RS09335 SM00822 BER93_RS09335 BER93_RS09350 SM00899 BER93_RS09350 BER93_RS09375 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BER93_RS09390 SM00851 MGS-like domain BER93_RS09390 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BER93_RS09410 SM00937 BER93_RS09410 BER93_RS09420 SM00448 cheY-homologous receiver domain BER93_RS09420 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER93_RS09430 SM00073 Histidine Phosphotransfer domain BER93_RS09430 SM00387 Histidine kinase-like ATPases BER93_RS09430 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS09430 SM00448 cheY-homologous receiver domain BER93_RS09455 SM00966 SpoVT / AbrB like domain BER93_RS09475 SM00052 Putative diguanylate phosphodiesterase BER93_RS09475 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER93_RS09475 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER93_RS09475 SM00091 PAS domain BER93_RS09475 SM00267 diguanylate cyclase BER93_RS09480 SM00448 cheY-homologous receiver domain BER93_RS09490 SM00138 Methyltransferase, chemotaxis proteins BER93_RS09500 SM00260 Two component signalling adaptor domain BER93_RS09510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER93_RS09510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER93_RS09520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER93_RS09520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER93_RS09525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER93_RS09525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER93_RS09535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER93_RS09535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER93_RS09560 SM00073 Histidine Phosphotransfer domain BER93_RS09560 SM00260 Two component signalling adaptor domain BER93_RS09560 SM00387 Histidine kinase-like ATPases BER93_RS09560 SM01231 BER93_RS09560 BER93_RS09565 SM00448 cheY-homologous receiver domain BER93_RS09575 SM00260 Two component signalling adaptor domain BER93_RS09750 SM00363 S4 RNA-binding domain BER93_RS09755 SM00316 Ribosomal protein S1-like RNA-binding domain BER93_RS09760 SM00421 helix_turn_helix, Lux Regulon BER93_RS09760 SM00448 cheY-homologous receiver domain BER93_RS09765 SM00450 Rhodanese Homology Domain BER93_RS09785 SM00984 UDP binding domain BER93_RS09855 SM00382 ATPases associated with a variety of cellular activities BER93_RS09855 SM01086 C-terminal, D2-small domain, of ClpB protein BER93_RS10055 SM00852 Probable molybdopterin binding domain BER93_RS10075 SM00450 Rhodanese Homology Domain BER93_RS10080 SM00852 Probable molybdopterin binding domain BER93_RS10085 SM00382 ATPases associated with a variety of cellular activities BER93_RS10090 SM00564 beta-propeller repeat BER93_RS10105 SM00028 Tetratricopeptide repeats BER93_RS10115 SM00562 BER93_RS10115 BER93_RS10145 SM00382 ATPases associated with a variety of cellular activities BER93_RS10160 SM00382 ATPases associated with a variety of cellular activities BER93_RS10160 SM00843 BER93_RS10160 BER93_RS10180 SM00316 Ribosomal protein S1-like RNA-binding domain BER93_RS10185 SM00382 ATPases associated with a variety of cellular activities BER93_RS10185 SM01086 C-terminal, D2-small domain, of ClpB protein BER93_RS10210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER93_RS10230 SM00091 PAS domain BER93_RS10230 SM00387 Histidine kinase-like ATPases BER93_RS10235 SM00052 Putative diguanylate phosphodiesterase BER93_RS10235 SM00267 diguanylate cyclase BER93_RS10235 SM00448 cheY-homologous receiver domain BER93_RS10240 SM00387 Histidine kinase-like ATPases BER93_RS10255 SM00858 BER93_RS10255 BER93_RS10260 SM00260 Two component signalling adaptor domain BER93_RS10260 SM00448 cheY-homologous receiver domain BER93_RS10305 SM00047 Lysozyme subfamily 2 BER93_RS10345 SM00421 helix_turn_helix, Lux Regulon BER93_RS10345 SM00448 cheY-homologous receiver domain BER93_RS10355 SM00448 cheY-homologous receiver domain BER93_RS10360 SM00382 ATPases associated with a variety of cellular activities BER93_RS10400 SM00382 ATPases associated with a variety of cellular activities BER93_RS10455 SM00267 diguanylate cyclase BER93_RS10460 SM00267 diguanylate cyclase BER93_RS10475 SM00382 ATPases associated with a variety of cellular activities BER93_RS10475 SM00962 SRP54-type protein, GTPase domain BER93_RS10490 SM00448 cheY-homologous receiver domain BER93_RS10500 SM00073 Histidine Phosphotransfer domain BER93_RS10500 SM00260 Two component signalling adaptor domain BER93_RS10500 SM00387 Histidine kinase-like ATPases BER93_RS10500 SM01231 BER93_RS10500 BER93_RS10565 SM00869 Autotransporter beta-domain BER93_RS10725 SM00014 Acid phosphatase homologues BER93_RS10735 SM00387 Histidine kinase-like ATPases BER93_RS10740 SM00448 cheY-homologous receiver domain BER93_RS10750 SM00052 Putative diguanylate phosphodiesterase BER93_RS10750 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER93_RS10750 SM00267 diguanylate cyclase BER93_RS10900 SM00758 BER93_RS10900 BER93_RS10955 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BER93_RS10980 SM01130 BER93_RS10980 BER93_RS11000 SM00670 Large family of predicted nucleotide-binding domains BER93_RS11055 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BER93_RS11065 SM00382 ATPases associated with a variety of cellular activities BER93_RS11210 SM00382 ATPases associated with a variety of cellular activities BER93_RS11220 SM01103 BER93_RS11220 BER93_RS11505 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BER93_RS11505 SM00465 GIY-YIG type nucleases (URI domain) BER93_RS11530 SM00382 ATPases associated with a variety of cellular activities BER93_RS11545 SM00849 Metallo-beta-lactamase superfamily BER93_RS11555 SM00382 ATPases associated with a variety of cellular activities BER93_RS11605 SM00382 ATPases associated with a variety of cellular activities BER93_RS11680 SM00448 cheY-homologous receiver domain BER93_RS11685 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER93_RS11685 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER93_RS11685 SM00091 PAS domain BER93_RS11685 SM00387 Histidine kinase-like ATPases BER93_RS11685 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS11685 SM00448 cheY-homologous receiver domain BER93_RS11690 SM00316 Ribosomal protein S1-like RNA-binding domain BER93_RS11690 SM00732 Likely ribonuclease with RNase H fold. BER93_RS11755 SM00479 BER93_RS11755 BER93_RS11765 SM00529 Helix-turn-helix diphteria tox regulatory element BER93_RS11870 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BER93_RS11890 SM00859 Semialdehyde dehydrogenase, NAD binding domain BER93_RS11925 SM00840 BER93_RS11925 BER93_RS11945 SM01234 BER93_RS11945 BER93_RS11980 SM00656 BER93_RS11980 BER93_RS12015 SM00841 Elongation factor P, C-terminal BER93_RS12015 SM01185 BER93_RS12015 BER93_RS12050 SM00382 ATPases associated with a variety of cellular activities BER93_RS12055 SM00382 ATPases associated with a variety of cellular activities BER93_RS12055 SM00487 DEAD-like helicases superfamily BER93_RS12055 SM00490 helicase superfamily c-terminal domain BER93_RS12080 SM00357 Cold shock protein domain BER93_RS12090 SM01322 BER93_RS12090 BER93_RS12100 SM00052 Putative diguanylate phosphodiesterase BER93_RS12100 SM00267 diguanylate cyclase BER93_RS12115 SM00822 BER93_RS12115 BER93_RS12135 SM00853 MutL C terminal dimerisation domain BER93_RS12135 SM01340 BER93_RS12135 BER93_RS12140 SM00646 BER93_RS12140 BER93_RS12265 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. BER93_RS12390 SM00729 Elongator protein 3, MiaB family, Radical SAM BER93_RS12445 SM01160 BER93_RS12445 BER93_RS12555 SM00830 Chorismate mutase type II BER93_RS12570 SM00354 helix_turn _helix lactose operon repressor BER93_RS12605 SM01323 BER93_RS12605 BER93_RS12620 SM00344 helix_turn_helix ASNC type BER93_RS12685 SM00387 Histidine kinase-like ATPases BER93_RS12690 SM01126 BER93_RS12690 BER93_RS12730 SM00098 Alkaline phosphatase homologues BER93_RS12735 SM00977 TilS substrate C-terminal domain BER93_RS12785 SM00316 Ribosomal protein S1-like RNA-binding domain BER93_RS12905 SM00382 ATPases associated with a variety of cellular activities BER93_RS13050 SM00382 ATPases associated with a variety of cellular activities BER93_RS13080 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER93_RS13080 SM00267 diguanylate cyclase BER93_RS13085 SM00363 S4 RNA-binding domain BER93_RS13095 SM00052 Putative diguanylate phosphodiesterase BER93_RS13095 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER93_RS13095 SM00091 PAS domain BER93_RS13095 SM00267 diguanylate cyclase BER93_RS13100 SM00487 DEAD-like helicases superfamily BER93_RS13100 SM00490 helicase superfamily c-terminal domain BER93_RS13170 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BER93_RS13170 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER93_RS13245 SM00645 Papain family cysteine protease BER93_RS13260 SM00487 DEAD-like helicases superfamily BER93_RS13260 SM00490 helicase superfamily c-terminal domain BER93_RS13260 SM00982 BER93_RS13260 BER93_RS13260 SM01058 CarD-like/TRCF domain BER93_RS13265 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BER93_RS13265 SM00534 ATPase domain of DNA mismatch repair MUTS family BER93_RS13305 SM00855 Phosphoglycerate mutase family BER93_RS13380 SM00267 diguanylate cyclase BER93_RS13450 SM00732 Likely ribonuclease with RNase H fold. BER93_RS13485 SM00382 ATPases associated with a variety of cellular activities BER93_RS13500 SM00411 bacterial (prokaryotic) histone like domain BER93_RS13520 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BER93_RS13535 SM00382 ATPases associated with a variety of cellular activities BER93_RS13565 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BER93_RS13570 SM00671 Sel1-like repeats. BER93_RS13680 SM00116 Domain in cystathionine beta-synthase and other proteins. BER93_RS13700 SM00382 ATPases associated with a variety of cellular activities BER93_RS13745 SM00924 MgtE intracellular N domain BER93_RS13790 SM00812 Alpha-L-fucosidase BER93_RS13795 SM00636 BER93_RS13795 BER93_RS13810 SM00758 BER93_RS13810 BER93_RS13810 SM01217 BER93_RS13810 BER93_RS13815 SM00382 ATPases associated with a variety of cellular activities BER93_RS13875 SM00788 Adenylosuccinate synthetase BER93_RS13885 SM00244 prohibitin homologues BER93_RS13890 SM00244 prohibitin homologues BER93_RS13895 SM00448 cheY-homologous receiver domain BER93_RS13900 SM00271 DnaJ molecular chaperone homology domain BER93_RS13980 SM00382 ATPases associated with a variety of cellular activities BER93_RS14030 SM00825 Beta-ketoacyl synthase BER93_RS14040 SM00822 BER93_RS14040 BER93_RS14045 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BER93_RS14085 SM00382 ATPases associated with a variety of cellular activities BER93_RS14095 SM00460 Transglutaminase/protease-like homologues BER93_RS14110 SM00493 BER93_RS14110 BER93_RS14120 SM00382 ATPases associated with a variety of cellular activities BER93_RS14150 SM00729 Elongator protein 3, MiaB family, Radical SAM BER93_RS14155 SM00849 Metallo-beta-lactamase superfamily BER93_RS14180 SM00331 Sigma factor PP2C-like phosphatases BER93_RS14180 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BER93_RS14185 SM00479 BER93_RS14185 BER93_RS14200 SM00849 Metallo-beta-lactamase superfamily BER93_RS14205 SM00257 Lysin motif BER93_RS14215 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BER93_RS14215 SM01232 BER93_RS14215 BER93_RS14255 SM00481 DNA polymerase alpha chain like domain BER93_RS14295 SM00974 BER93_RS14295 BER93_RS14310 SM01092 CO dehydrogenase flavoprotein C-terminal domain BER93_RS14315 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BER93_RS14400 SM00382 ATPases associated with a variety of cellular activities BER93_RS14400 SM00994 ClpX C4-type zinc finger BER93_RS14400 SM01086 C-terminal, D2-small domain, of ClpB protein BER93_RS14405 SM00382 ATPases associated with a variety of cellular activities BER93_RS14405 SM00464 Found in ATP-dependent protease La (LON) BER93_RS14410 SM00411 bacterial (prokaryotic) histone like domain BER93_RS14495 SM00382 ATPases associated with a variety of cellular activities BER93_RS14505 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BER93_RS14550 SM00382 ATPases associated with a variety of cellular activities BER93_RS14620 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER93_RS14620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER93_RS14635 SM00421 helix_turn_helix, Lux Regulon BER93_RS14745 SM00387 Histidine kinase-like ATPases BER93_RS14745 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS14745 SM00448 cheY-homologous receiver domain BER93_RS14750 SM00387 Histidine kinase-like ATPases BER93_RS14750 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS14750 SM00448 cheY-homologous receiver domain BER93_RS14770 SM00448 cheY-homologous receiver domain BER93_RS14775 SM00387 Histidine kinase-like ATPases BER93_RS14775 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS14805 SM00342 helix_turn_helix, arabinose operon control protein BER93_RS14810 SM00862 Transcriptional regulatory protein, C terminal BER93_RS14820 SM00382 ATPases associated with a variety of cellular activities BER93_RS14825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER93_RS14870 SM00904 Riboflavin kinase BER93_RS14980 SM00244 prohibitin homologues BER93_RS15005 SM00478 endonuclease III BER93_RS15020 SM00421 helix_turn_helix, Lux Regulon BER93_RS15020 SM00448 cheY-homologous receiver domain BER93_RS15055 SM00387 Histidine kinase-like ATPases BER93_RS15055 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS15060 SM00448 cheY-homologous receiver domain BER93_RS15060 SM00862 Transcriptional regulatory protein, C terminal BER93_RS15100 SM01060 BER93_RS15100 BER93_RS15110 SM00091 PAS domain BER93_RS15110 SM00342 helix_turn_helix, arabinose operon control protein BER93_RS15195 SM00382 ATPases associated with a variety of cellular activities BER93_RS15195 SM01086 C-terminal, D2-small domain, of ClpB protein BER93_RS15320 SM01329 BER93_RS15320 BER93_RS15345 SM00448 cheY-homologous receiver domain BER93_RS15345 SM00862 Transcriptional regulatory protein, C terminal BER93_RS15350 SM00387 Histidine kinase-like ATPases BER93_RS15350 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS15370 SM00014 Acid phosphatase homologues BER93_RS15420 SM00369 Leucine-rich repeats, typical (most populated) subfamily BER93_RS15440 SM01149 BER93_RS15440 BER93_RS15465 SM00220 Serine/Threonine protein kinases, catalytic domain BER93_RS15500 SM01040 BRO family, N-terminal domain BER93_RS15515 SM00487 DEAD-like helicases superfamily BER93_RS15570 SM00528 Domain in histone-like proteins of HNS family BER93_RS15585 SM00382 ATPases associated with a variety of cellular activities BER93_RS15615 SM00882 Coenzyme A transferase BER93_RS15620 SM00882 Coenzyme A transferase BER93_RS15655 SM00893 Electron transfer flavoprotein domain BER93_RS15660 SM00893 Electron transfer flavoprotein domain BER93_RS15720 SM00382 ATPases associated with a variety of cellular activities BER93_RS15740 SM00116 Domain in cystathionine beta-synthase and other proteins. BER93_RS15780 SM00487 DEAD-like helicases superfamily BER93_RS15780 SM00490 helicase superfamily c-terminal domain BER93_RS15800 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER93_RS15845 SM00825 Beta-ketoacyl synthase BER93_RS15925 SM00830 Chorismate mutase type II BER93_RS15935 SM00382 ATPases associated with a variety of cellular activities BER93_RS16000 SM00986 Uracil DNA glycosylase superfamily BER93_RS16000 SM00987 UreE urease accessory protein, C-terminal domain BER93_RS16025 SM00382 ATPases associated with a variety of cellular activities BER93_RS16025 SM00930 BER93_RS16025 BER93_RS16100 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER93_RS16100 SM00091 PAS domain BER93_RS16100 SM00387 Histidine kinase-like ATPases BER93_RS16100 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS16100 SM00448 cheY-homologous receiver domain BER93_RS16120 SM01005 Alanine racemase, C-terminal domain BER93_RS16130 SM00344 helix_turn_helix ASNC type BER93_RS16320 SM00878 Biotin carboxylase C-terminal domain BER93_RS16335 SM00530 Helix-turn-helix XRE-family like proteins BER93_RS16355 SM00798 AICARFT/IMPCHase bienzyme BER93_RS16355 SM00851 MGS-like domain BER93_RS16360 SM01209 BER93_RS16360 BER93_RS16360 SM01210 BER93_RS16360 BER93_RS16385 SM00563 Phosphate acyltransferases BER93_RS16575 SM00487 DEAD-like helicases superfamily BER93_RS16575 SM00490 helicase superfamily c-terminal domain BER93_RS16575 SM00847 Helicase associated domain (HA2) Add an annotation BER93_RS16610 SM00829 Enoylreductase BER93_RS16695 SM00878 Biotin carboxylase C-terminal domain BER93_RS16805 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER93_RS16805 SM00387 Histidine kinase-like ATPases BER93_RS16830 SM00506 Appr-1"-p processing enzyme BER93_RS16875 SM00387 Histidine kinase-like ATPases BER93_RS16910 SM01126 BER93_RS16910 BER93_RS16945 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BER93_RS16960 SM00849 Metallo-beta-lactamase superfamily BER93_RS16975 SM00382 ATPases associated with a variety of cellular activities BER93_RS17015 SM00861 Transketolase, pyrimidine binding domain BER93_RS17030 SM00028 Tetratricopeptide repeats BER93_RS17030 SM00327 von Willebrand factor (vWF) type A domain BER93_RS17035 SM00327 von Willebrand factor (vWF) type A domain BER93_RS17050 SM00382 ATPases associated with a variety of cellular activities BER93_RS17115 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BER93_RS17120 SM00986 Uracil DNA glycosylase superfamily BER93_RS17120 SM00987 UreE urease accessory protein, C-terminal domain BER93_RS17125 SM00729 Elongator protein 3, MiaB family, Radical SAM BER93_RS17190 SM00091 PAS domain BER93_RS17190 SM00138 Methyltransferase, chemotaxis proteins BER93_RS17190 SM00911 HWE histidine kinase BER93_RS17195 SM00448 cheY-homologous receiver domain BER93_RS17205 SM00382 ATPases associated with a variety of cellular activities BER93_RS17205 SM00448 cheY-homologous receiver domain BER93_RS17255 SM00382 ATPases associated with a variety of cellular activities BER93_RS17325 SM00382 ATPases associated with a variety of cellular activities BER93_RS17420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER93_RS17420 SM00331 Sigma factor PP2C-like phosphatases BER93_RS17445 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BER93_RS17490 SM00867 YceI-like domain BER93_RS17565 SM00883 Chaperonin 10 Kd subunit BER93_RS17630 SM00642 Alpha-amylase domain BER93_RS17640 SM00642 Alpha-amylase domain BER93_RS17650 SM00642 Alpha-amylase domain BER93_RS17655 SM00642 Alpha-amylase domain BER93_RS17665 SM00267 diguanylate cyclase BER93_RS17710 SM00729 Elongator protein 3, MiaB family, Radical SAM BER93_RS17710 SM00876 Biotin and Thiamin Synthesis associated domain BER93_RS17770 SM01228 BER93_RS17770 BER93_RS17785 SM00090 RIO-like kinase BER93_RS17795 SM00420 helix_turn_helix, Deoxyribose operon repressor BER93_RS17795 SM01134 BER93_RS17795 BER93_RS17845 SM00563 Phosphate acyltransferases BER93_RS17955 SM00052 Putative diguanylate phosphodiesterase BER93_RS17955 SM00267 diguanylate cyclase BER93_RS17955 SM00448 cheY-homologous receiver domain BER93_RS17960 SM00387 Histidine kinase-like ATPases BER93_RS17960 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS17960 SM00448 cheY-homologous receiver domain BER93_RS18015 SM00100 Cyclic nucleotide-monophosphate binding domain BER93_RS18015 SM00419 helix_turn_helix, cAMP Regulatory protein BER93_RS18090 SM01230 BER93_RS18090 BER93_RS18100 SM00046 Diacylglycerol kinase catalytic domain (presumed) BER93_RS18120 SM00271 DnaJ molecular chaperone homology domain BER93_RS18225 SM00644 BER93_RS18225 BER93_RS18235 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BER93_RS18270 SM01217 BER93_RS18270 BER93_RS18275 SM00905 Dihydroneopterin aldolase BER93_RS18300 SM00400 zinc finger BER93_RS18300 SM00493 BER93_RS18300 BER93_RS18300 SM00766 DNA primase DnaG DnaB-binding BER93_RS18370 SM00363 S4 RNA-binding domain BER93_RS18420 SM00470 ParB-like nuclease domain BER93_RS18445 SM01259 BER93_RS18445 BER93_RS18475 SM00836 DALR anticodon binding domain BER93_RS18475 SM01016 Arginyl tRNA synthetase N terminal dom BER93_RS18520 SM00823 Phosphopantetheine attachment site BER93_RS18520 SM00824 Thioesterase BER93_RS18530 SM00387 Histidine kinase-like ATPases BER93_RS18530 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS18535 SM00448 cheY-homologous receiver domain BER93_RS18535 SM00862 Transcriptional regulatory protein, C terminal BER93_RS18560 SM00248 ankyrin repeats BER93_RS18565 SM01060 BER93_RS18565 BER93_RS18570 SM00491 BER93_RS18570 BER93_RS18595 SM01004 Delta-aminolevulinic acid dehydratase BER93_RS18640 SM01230 BER93_RS18640 BER93_RS18645 SM00938 Nitrogen regulatory protein P-II BER93_RS18655 SM00387 Histidine kinase-like ATPases BER93_RS18655 SM00388 His Kinase A (phosphoacceptor) domain BER93_RS18660 SM00382 ATPases associated with a variety of cellular activities BER93_RS18660 SM00448 cheY-homologous receiver domain BER93_RS18685 SM00028 Tetratricopeptide repeats BER93_RS18700 SM00563 Phosphate acyltransferases BER93_RS18710 SM00155 Phospholipase D. Active site motifs. BER93_RS18715 SM00867 YceI-like domain BER93_RS18720 SM00855 Phosphoglycerate mutase family BER93_RS18775 SM00382 ATPases associated with a variety of cellular activities BER93_RS18785 SM00382 ATPases associated with a variety of cellular activities BER93_RS18790 SM00344 helix_turn_helix ASNC type BER93_RS18815 SM00354 helix_turn _helix lactose operon repressor BER93_RS18855 SM00642 Alpha-amylase domain BER93_RS18860 SM00642 Alpha-amylase domain BER93_RS18865 SM00642 Alpha-amylase domain BER93_RS18950 SM00829 Enoylreductase BER93_RS18975 SM00836 DALR anticodon binding domain BER93_RS18985 SM00382 ATPases associated with a variety of cellular activities BER93_RS19050 SM00354 helix_turn _helix lactose operon repressor BER93_RS19230 SM00530 Helix-turn-helix XRE-family like proteins BER93_RS19255 SM00382 ATPases associated with a variety of cellular activities BER93_RS19320 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER93_RS19320 SM00091 PAS domain BER93_RS19320 SM00267 diguanylate cyclase BER93_RS19560 SM00382 ATPases associated with a variety of cellular activities BER93_RS19560 SM00760 Bacterial dnaA protein helix-turn-helix domain