##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM2079013v1 #!genome-build-accession NCBI_Assembly:GCF_020790135.1 #!annotation-date 12/08/2022 09:42:29 #!annotation-source NCBI RefSeq ##sequence-region NZ_CP086200.1 1 4966657 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=64187 NZ_CP086200.1 RefSeq region 1 4966657 . + . ID=NZ_CP086200.1:1..4966657;Dbxref=taxon:64187;Is_circular=true;Name=ANONYMOUS;collection-date=2021-08-18;country=China:Guangxi;gbkey=Src;genome=chromosome;isolation-source=infected rice leaf;lat-lon=23.40 N 105.84 E;mol_type=genomic DNA;nat-host=Oryza sativa;pathovar=oryzae;strain=GXO2006 NZ_CP086200.1 RefSeq gene 1 1329 . + . ID=gene-LLC55_RS00005;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=LLC55_RS00005;old_locus_tag=LLC55_00005 NZ_CP086200.1 Protein Homology CDS 1 1329 . + 0 ID=cds-WP_011407161.1;Parent=gene-LLC55_RS00005;Dbxref=Genbank:WP_011407161.1;Name=WP_011407161.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050021.1;locus_tag=LLC55_RS00005;product=chromosomal replication initiator protein DnaA;protein_id=WP_011407161.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1607 2707 . + . ID=gene-LLC55_RS00010;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=LLC55_RS00010;old_locus_tag=LLC55_00010 NZ_CP086200.1 Protein Homology CDS 1607 2707 . + 0 ID=cds-WP_011257008.1;Parent=gene-LLC55_RS00010;Dbxref=Genbank:WP_011257008.1;Name=WP_011257008.1;Ontology_term=GO:0006260,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451791.1;locus_tag=LLC55_RS00010;product=DNA polymerase III subunit beta;protein_id=WP_011257008.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3959 5065 . + . ID=gene-LLC55_RS00015;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=LLC55_RS00015;old_locus_tag=LLC55_00015 NZ_CP086200.1 Protein Homology CDS 3959 5065 . + 0 ID=cds-WP_011257009.1;Parent=gene-LLC55_RS00015;Dbxref=Genbank:WP_011257009.1;Name=WP_011257009.1;Ontology_term=GO:0006281,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501259.1;locus_tag=LLC55_RS00015;product=DNA replication/repair protein RecF;protein_id=WP_011257009.1;transl_table=11 NZ_CP086200.1 RefSeq gene 5181 7625 . + . ID=gene-LLC55_RS00020;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=LLC55_RS00020;old_locus_tag=LLC55_00020 NZ_CP086200.1 Protein Homology CDS 5181 7625 . + 0 ID=cds-WP_011407163.1;Parent=gene-LLC55_RS00020;Dbxref=Genbank:WP_011407163.1;Name=WP_011407163.1;Ontology_term=GO:0006265,GO:0003918,GO:0009330;gbkey=CDS;gene=gyrB;go_component=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) complex|0009330||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912438.1;locus_tag=LLC55_RS00020;product=DNA topoisomerase (ATP-hydrolyzing) subunit B;protein_id=WP_011407163.1;transl_table=11 NZ_CP086200.1 RefSeq gene 7693 8529 . + . ID=gene-LLC55_RS00025;Name=LLC55_RS00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00025;old_locus_tag=LLC55_00025 NZ_CP086200.1 Protein Homology CDS 7693 8529 . + 0 ID=cds-WP_011407164.1;Parent=gene-LLC55_RS00025;Dbxref=Genbank:WP_011407164.1;Name=WP_011407164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971885.1;locus_tag=LLC55_RS00025;product=CPBP family intramembrane metalloprotease;protein_id=WP_011407164.1;transl_table=11 NZ_CP086200.1 RefSeq gene 8716 9522 . + . ID=gene-LLC55_RS00030;Name=LLC55_RS00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00030;old_locus_tag=LLC55_00030 NZ_CP086200.1 Protein Homology CDS 8716 9522 . + 0 ID=cds-WP_011407165.1;Parent=gene-LLC55_RS00030;Dbxref=Genbank:WP_011407165.1;Name=WP_011407165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901838.1;locus_tag=LLC55_RS00030;product=M48 family metallopeptidase;protein_id=WP_011407165.1;transl_table=11 NZ_CP086200.1 RefSeq gene 9799 10992 . + . ID=gene-LLC55_RS00035;Name=LLC55_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00035;old_locus_tag=LLC55_00035 NZ_CP086200.1 Protein Homology CDS 9799 10992 . + 0 ID=cds-WP_011257013.1;Parent=gene-LLC55_RS00035;Dbxref=Genbank:WP_011257013.1;Name=WP_011257013.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376399.1;locus_tag=LLC55_RS00035;product=tetratricopeptide repeat protein;protein_id=WP_011257013.1;transl_table=11 NZ_CP086200.1 RefSeq gene 11260 11817 . + . ID=gene-LLC55_RS00040;Name=LLC55_RS00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00040;old_locus_tag=LLC55_00040 NZ_CP086200.1 Protein Homology CDS 11260 11817 . + 0 ID=cds-WP_075240306.1;Parent=gene-LLC55_RS00040;Dbxref=Genbank:WP_075240306.1;Name=WP_075240306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505935.1;locus_tag=LLC55_RS00040;product=energy transducer TonB;protein_id=WP_075240306.1;transl_table=11 NZ_CP086200.1 RefSeq gene 11902 12663 . + . ID=gene-LLC55_RS00045;Name=exbB;gbkey=Gene;gene=exbB;gene_biotype=protein_coding;locus_tag=LLC55_RS00045;old_locus_tag=LLC55_00045 NZ_CP086200.1 Protein Homology CDS 11902 12663 . + 0 ID=cds-WP_011257015.1;Parent=gene-LLC55_RS00045;Dbxref=Genbank:WP_011257015.1;Name=WP_011257015.1;gbkey=CDS;gene=exbB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002805928.1;locus_tag=LLC55_RS00045;product=TonB-system energizer ExbB;protein_id=WP_011257015.1;transl_table=11 NZ_CP086200.1 RefSeq gene 12710 13132 . + . ID=gene-LLC55_RS00050;Name=LLC55_RS00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00050;old_locus_tag=LLC55_00050 NZ_CP086200.1 Protein Homology CDS 12710 13132 . + 0 ID=cds-WP_010364790.1;Parent=gene-LLC55_RS00050;Dbxref=Genbank:WP_010364790.1;Name=WP_010364790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912447.1;locus_tag=LLC55_RS00050;product=biopolymer transporter ExbD;protein_id=WP_010364790.1;transl_table=11 NZ_CP086200.1 RefSeq gene 13136 13549 . + . ID=gene-LLC55_RS00055;Name=LLC55_RS00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00055;old_locus_tag=LLC55_00055 NZ_CP086200.1 Protein Homology CDS 13136 13549 . + 0 ID=cds-WP_011257016.1;Parent=gene-LLC55_RS00055;Dbxref=Genbank:WP_011257016.1;Name=WP_011257016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155972.1;locus_tag=LLC55_RS00055;product=biopolymer transporter ExbD;protein_id=WP_011257016.1;transl_table=11 NZ_CP086200.1 RefSeq gene 13845 14612 . - . ID=gene-LLC55_RS00060;Name=LLC55_RS00060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00060;old_locus_tag=LLC55_00060 NZ_CP086200.1 Protein Homology CDS 13845 14612 . - 0 ID=cds-WP_011407166.1;Parent=gene-LLC55_RS00060;Dbxref=Genbank:WP_011407166.1;Name=WP_011407166.1;Ontology_term=GO:0008615,GO:0033856;gbkey=CDS;go_function=pyridoxine 5'-phosphate synthase activity|0033856||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364763.1;locus_tag=LLC55_RS00060;product=pyridoxine 5'-phosphate synthase;protein_id=WP_011407166.1;transl_table=11 NZ_CP086200.1 RefSeq gene 14623 14892 . - . ID=gene-LLC55_RS00065;Name=LLC55_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00065;old_locus_tag=LLC55_00065 NZ_CP086200.1 Protein Homology CDS 14623 14892 . - 0 ID=cds-WP_019301610.1;Parent=gene-LLC55_RS00065;Dbxref=Genbank:WP_019301610.1;Name=WP_019301610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155969.1;locus_tag=LLC55_RS00065;product=hypothetical protein;protein_id=WP_019301610.1;transl_table=11 NZ_CP086200.1 RefSeq gene 14967 16427 . - . ID=gene-LLC55_RS00070;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=LLC55_RS00070;old_locus_tag=LLC55_00070 NZ_CP086200.1 Protein Homology CDS 14967 16427 . - 0 ID=cds-WP_011407167.1;Parent=gene-LLC55_RS00070;Dbxref=Genbank:WP_011407167.1;Name=WP_011407167.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155968.1;locus_tag=LLC55_RS00070;product=cardiolipin synthase;protein_id=WP_011407167.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 16809 17034 . + . ID=gene-LLC55_RS00075;Name=LLC55_RS00075;end_range=17034,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00075;old_locus_tag=LLC55_00075;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 16809 17034 . + 0 ID=cds-LLC55_RS00075;Parent=gene-LLC55_RS00075;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=17034,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167724.1;locus_tag=LLC55_RS00075;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 17074 18084 . - . ID=gene-LLC55_RS00080;Name=LLC55_RS00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00080;old_locus_tag=LLC55_00080 NZ_CP086200.1 Protein Homology CDS 17074 18084 . - 0 ID=cds-WP_011257020.1;Parent=gene-LLC55_RS00080;Dbxref=Genbank:WP_011257020.1;Name=WP_011257020.1;Ontology_term=GO:0005975,GO:0042132;gbkey=CDS;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379759.1;locus_tag=LLC55_RS00080;product=class 1 fructose-bisphosphatase;protein_id=WP_011257020.1;transl_table=11 NZ_CP086200.1 RefSeq gene 18356 19558 . - . ID=gene-LLC55_RS00085;Name=LLC55_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00085;old_locus_tag=LLC55_00085 NZ_CP086200.1 Protein Homology CDS 18356 19558 . - 0 ID=cds-WP_011257021.1;Parent=gene-LLC55_RS00085;Dbxref=Genbank:WP_011257021.1;Name=WP_011257021.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849085.1;locus_tag=LLC55_RS00085;product=aspartate/tyrosine/aromatic aminotransferase;protein_id=WP_011257021.1;transl_table=11 NZ_CP086200.1 RefSeq gene 19700 21838 . + . ID=gene-LLC55_RS00090;Name=LLC55_RS00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00090;old_locus_tag=LLC55_00090 NZ_CP086200.1 Protein Homology CDS 19700 21838 . + 0 ID=cds-WP_011407169.1;Parent=gene-LLC55_RS00090;Dbxref=Genbank:WP_011407169.1;Name=WP_011407169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915984.1;locus_tag=LLC55_RS00090;product=TonB-dependent receptor;protein_id=WP_011407169.1;transl_table=11 NZ_CP086200.1 RefSeq gene 22049 22342 . + . ID=gene-LLC55_RS00095;Name=LLC55_RS00095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00095;old_locus_tag=LLC55_00095 NZ_CP086200.1 Protein Homology CDS 22049 22342 . + 0 ID=cds-WP_012443560.1;Parent=gene-LLC55_RS00095;Dbxref=Genbank:WP_012443560.1;Name=WP_012443560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379761.1;locus_tag=LLC55_RS00095;product=hypothetical protein;protein_id=WP_012443560.1;transl_table=11 NZ_CP086200.1 RefSeq gene 22374 22871 . - . ID=gene-LLC55_RS00100;Name=LLC55_RS00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00100;old_locus_tag=LLC55_00100 NZ_CP086200.1 GeneMarkS-2+ CDS 22374 22871 . - 0 ID=cds-WP_153296734.1;Parent=gene-LLC55_RS00100;Dbxref=Genbank:WP_153296734.1;Name=WP_153296734.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00100;product=hypothetical protein;protein_id=WP_153296734.1;transl_table=11 NZ_CP086200.1 RefSeq gene 23118 24098 . - . ID=gene-LLC55_RS00105;Name=LLC55_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00105;old_locus_tag=LLC55_00105 NZ_CP086200.1 Protein Homology CDS 23118 24098 . - 0 ID=cds-WP_011257024.1;Parent=gene-LLC55_RS00105;Dbxref=Genbank:WP_011257024.1;Name=WP_011257024.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257128.1;locus_tag=LLC55_RS00105;product=IS5 family transposase;protein_id=WP_011257024.1;transl_table=11 NZ_CP086200.1 RefSeq gene 24146 25312 . - . ID=gene-LLC55_RS00110;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=LLC55_RS00110;old_locus_tag=LLC55_00110 NZ_CP086200.1 Protein Homology CDS 24146 25312 . - 0 ID=cds-WP_011257025.1;Parent=gene-LLC55_RS00110;Dbxref=Genbank:WP_011257025.1;Name=WP_011257025.1;Ontology_term=GO:0006089,GO:0004457,GO:0010181;gbkey=CDS;gene=lldD;go_function=lactate dehydrogenase activity|0004457||IEA,FMN binding|0010181||IEA;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573929.1;locus_tag=LLC55_RS00110;product=FMN-dependent L-lactate dehydrogenase LldD;protein_id=WP_011257025.1;transl_table=11 NZ_CP086200.1 RefSeq gene 25459 26025 . - . ID=gene-LLC55_RS00115;Name=LLC55_RS00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00115;old_locus_tag=LLC55_00115 NZ_CP086200.1 Protein Homology CDS 25459 26025 . - 0 ID=cds-WP_069959658.1;Parent=gene-LLC55_RS00115;Dbxref=Genbank:WP_069959658.1;Name=WP_069959658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165246.1;locus_tag=LLC55_RS00115;product=phosphatidylethanolamine N-methyltransferase family protein;protein_id=WP_069959658.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 26086 26352 . + . ID=gene-LLC55_RS00120;Name=LLC55_RS00120;end_range=26352,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00120;old_locus_tag=LLC55_00120;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 26086 26352 . + 0 ID=cds-LLC55_RS00120;Parent=gene-LLC55_RS00120;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=26352,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088940.1;locus_tag=LLC55_RS00120;partial=true;product=sensor histidine kinase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 26355 27218 . - . ID=gene-LLC55_RS00125;Name=LLC55_RS00125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00125;old_locus_tag=LLC55_00125;partial=true;pseudo=true;start_range=.,26355 NZ_CP086200.1 Protein Homology CDS 26355 27218 . - 0 ID=cds-LLC55_RS00125;Parent=gene-LLC55_RS00125;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154859.1;locus_tag=LLC55_RS00125;partial=true;product=winged helix-turn-helix domain-containing protein;pseudo=true;start_range=.,26355;transl_table=11 NZ_CP086200.1 RefSeq gene 27500 28708 . + . ID=gene-LLC55_RS00130;Name=LLC55_RS00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00130;old_locus_tag=LLC55_00130 NZ_CP086200.1 Protein Homology CDS 27500 28708 . + 0 ID=cds-WP_069959660.1;Parent=gene-LLC55_RS00130;Dbxref=Genbank:WP_069959660.1;Name=WP_069959660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301943.1;locus_tag=LLC55_RS00130;product=trans-2-enoyl-CoA reductase family protein;protein_id=WP_069959660.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 28929 29122 . + . ID=gene-LLC55_RS00135;Name=LLC55_RS00135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00135;old_locus_tag=LLC55_00135;pseudo=true NZ_CP086200.1 Protein Homology CDS 28929 29122 . + 0 ID=cds-LLC55_RS00135;Parent=gene-LLC55_RS00135;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915938.1;locus_tag=LLC55_RS00135;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 29336 30358 . - . ID=gene-LLC55_RS00140;Name=LLC55_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00140;old_locus_tag=LLC55_00140 NZ_CP086200.1 Protein Homology CDS 29336 30358 . - 0 ID=cds-WP_011257029.1;Parent=gene-LLC55_RS00140;Dbxref=Genbank:WP_011257029.1;Name=WP_011257029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970754.1;locus_tag=LLC55_RS00140;product=sugar kinase;protein_id=WP_011257029.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 30645 30998 . + . ID=gene-LLC55_RS00145;Name=LLC55_RS00145;end_range=30998,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00145;old_locus_tag=LLC55_00145;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 30645 30998 . + 0 ID=cds-LLC55_RS00145;Parent=gene-LLC55_RS00145;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=30998,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970752.1;locus_tag=LLC55_RS00145;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 31181 32149 . + . ID=gene-LLC55_RS00150;Name=LLC55_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00150;old_locus_tag=LLC55_00150 NZ_CP086200.1 Protein Homology CDS 31181 32149 . + 0 ID=cds-WP_011407175.1;Parent=gene-LLC55_RS00150;Dbxref=Genbank:WP_011407175.1;Name=WP_011407175.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS00150;product=IS5-like element ISXo1 family transposase;protein_id=WP_011407175.1;transl_table=11 NZ_CP086200.1 RefSeq gene 32637 33773 . + . ID=gene-LLC55_RS00155;Name=LLC55_RS00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00155;old_locus_tag=LLC55_00155 NZ_CP086200.1 GeneMarkS-2+ CDS 32637 33773 . + 0 ID=cds-WP_011407176.1;Parent=gene-LLC55_RS00155;Dbxref=Genbank:WP_011407176.1;Name=WP_011407176.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00155;product=hypothetical protein;protein_id=WP_011407176.1;transl_table=11 NZ_CP086200.1 RefSeq gene 33770 34477 . + . ID=gene-LLC55_RS00160;Name=LLC55_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00160;old_locus_tag=LLC55_00160 NZ_CP086200.1 Protein Homology CDS 33770 34477 . + 0 ID=cds-WP_129215536.1;Parent=gene-LLC55_RS00160;Dbxref=Genbank:WP_129215536.1;Name=WP_129215536.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012235.2;locus_tag=LLC55_RS00160;product=ABC transporter ATP-binding protein;protein_id=WP_129215536.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 34665 35057 . - . ID=gene-LLC55_RS00165;Name=LLC55_RS00165;end_range=35057,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00165;old_locus_tag=LLC55_00165;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 34665 35057 . - 0 ID=cds-LLC55_RS00165;Parent=gene-LLC55_RS00165;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=35057,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS00165;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 35079 36455 . - . ID=gene-LLC55_RS00170;Name=LLC55_RS00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00170;old_locus_tag=LLC55_00170 NZ_CP086200.1 Protein Homology CDS 35079 36455 . - 0 ID=cds-WP_012443646.1;Parent=gene-LLC55_RS00170;Dbxref=Genbank:WP_012443646.1;Name=WP_012443646.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS00170;product=IS5 family transposase;protein_id=WP_012443646.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 36571 37659 . - . ID=gene-LLC55_RS00175;Name=LLC55_RS00175;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00175;old_locus_tag=LLC55_00175;partial=true;pseudo=true;start_range=.,36571 NZ_CP086200.1 Protein Homology CDS 36571 37659 . - 0 ID=cds-LLC55_RS00175;Parent=gene-LLC55_RS00175;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS00175;partial=true;product=IS5-like element ISXoo5 family transposase;pseudo=true;start_range=.,36571;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 37776 38039 . + . ID=gene-LLC55_RS00180;Name=LLC55_RS00180;end_range=38039,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00180;old_locus_tag=LLC55_00180;partial=true;pseudo=true;start_range=.,37776 NZ_CP086200.1 Protein Homology CDS 37776 38039 . + 0 ID=cds-LLC55_RS00180;Parent=gene-LLC55_RS00180;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0016746;end_range=38039,.;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156544.1;locus_tag=LLC55_RS00180;partial=true;product=2-oxo acid dehydrogenase subunit E2;pseudo=true;start_range=.,37776;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 38127 39092 . + . ID=gene-LLC55_RS00185;Name=LLC55_RS00185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00185;old_locus_tag=LLC55_00185;pseudo=true NZ_CP086200.1 Protein Homology CDS 38127 39092 . + 0 ID=cds-LLC55_RS00185;Parent=gene-LLC55_RS00185;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS00185;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 39088 39414 . + . ID=gene-LLC55_RS00190;Name=LLC55_RS00190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00190;old_locus_tag=LLC55_00190;partial=true;pseudo=true;start_range=.,39088 NZ_CP086200.1 Protein Homology CDS 39088 39414 . + 0 ID=cds-LLC55_RS00190;Parent=gene-LLC55_RS00190;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050323.1;locus_tag=LLC55_RS00190;partial=true;product=2-oxo acid dehydrogenase subunit E2;pseudo=true;start_range=.,39088;transl_table=11 NZ_CP086200.1 RefSeq gene 39468 39710 . - . ID=gene-LLC55_RS00195;Name=LLC55_RS00195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00195;old_locus_tag=LLC55_00195 NZ_CP086200.1 Protein Homology CDS 39468 39710 . - 0 ID=cds-WP_012443643.1;Parent=gene-LLC55_RS00195;Dbxref=Genbank:WP_012443643.1;Name=WP_012443643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501670.1;locus_tag=LLC55_RS00195;product=hypothetical protein;protein_id=WP_012443643.1;transl_table=11 NZ_CP086200.1 RefSeq gene 39652 40263 . - . ID=gene-LLC55_RS00200;Name=LLC55_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00200;old_locus_tag=LLC55_00200 NZ_CP086200.1 Protein Homology CDS 39652 40263 . - 0 ID=cds-WP_228329674.1;Parent=gene-LLC55_RS00200;Dbxref=Genbank:WP_228329674.1;Name=WP_228329674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501669.1;locus_tag=LLC55_RS00200;product=type III effector protein XopW;protein_id=WP_228329674.1;transl_table=11 NZ_CP086200.1 RefSeq gene 40441 41421 . - . ID=gene-LLC55_RS00205;Name=LLC55_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00205;old_locus_tag=LLC55_00205 NZ_CP086200.1 Protein Homology CDS 40441 41421 . - 0 ID=cds-WP_012443641.1;Parent=gene-LLC55_RS00205;Dbxref=Genbank:WP_012443641.1;Name=WP_012443641.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257128.1;locus_tag=LLC55_RS00205;product=IS5-like element ISXoo7 family transposase;protein_id=WP_012443641.1;transl_table=11 NZ_CP086200.1 RefSeq gene 42040 43329 . + . ID=gene-LLC55_RS00210;Name=LLC55_RS00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00210;old_locus_tag=LLC55_00210 NZ_CP086200.1 Protein Homology CDS 42040 43329 . + 0 ID=cds-WP_011407184.1;Parent=gene-LLC55_RS00210;Dbxref=Genbank:WP_011407184.1;Name=WP_011407184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035678.1;locus_tag=LLC55_RS00210;product=DEAD/DEAH box helicase;protein_id=WP_011407184.1;transl_table=11 NZ_CP086200.1 RefSeq gene 43769 44104 . - . ID=gene-LLC55_RS00215;Name=LLC55_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00215;old_locus_tag=LLC55_00215 NZ_CP086200.1 Protein Homology CDS 43769 44104 . - 0 ID=cds-WP_012443638.1;Parent=gene-LLC55_RS00215;Dbxref=Genbank:WP_012443638.1;Name=WP_012443638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301442.1;locus_tag=LLC55_RS00215;product=DUF6172 family protein;protein_id=WP_012443638.1;transl_table=11 NZ_CP086200.1 RefSeq gene 44379 44810 . - . ID=gene-LLC55_RS00220;Name=LLC55_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00220;old_locus_tag=LLC55_00220 NZ_CP086200.1 Protein Homology CDS 44379 44810 . - 0 ID=cds-WP_011407187.1;Parent=gene-LLC55_RS00220;Dbxref=Genbank:WP_011407187.1;Name=WP_011407187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156537.1;locus_tag=LLC55_RS00220;product=VirK family protein;protein_id=WP_011407187.1;transl_table=11 NZ_CP086200.1 RefSeq gene 44972 45124 . - . ID=gene-LLC55_RS00225;Name=LLC55_RS00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00225;old_locus_tag=LLC55_00225 NZ_CP086200.1 GeneMarkS-2+ CDS 44972 45124 . - 0 ID=cds-WP_155296471.1;Parent=gene-LLC55_RS00225;Dbxref=Genbank:WP_155296471.1;Name=WP_155296471.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00225;product=hypothetical protein;protein_id=WP_155296471.1;transl_table=11 NZ_CP086200.1 RefSeq gene 45159 46568 . - . ID=gene-LLC55_RS00230;Name=LLC55_RS00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00230;old_locus_tag=LLC55_00230 NZ_CP086200.1 Protein Homology CDS 45159 46568 . - 0 ID=cds-WP_024743401.1;Parent=gene-LLC55_RS00230;Dbxref=Genbank:WP_024743401.1;Name=WP_024743401.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901659.1;locus_tag=LLC55_RS00230;product=FAD/NAD(P)-binding protein;protein_id=WP_024743401.1;transl_table=11 NZ_CP086200.1 RefSeq gene 46846 47061 . + . ID=gene-LLC55_RS00235;Name=LLC55_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00235;old_locus_tag=LLC55_00235 NZ_CP086200.1 GeneMarkS-2+ CDS 46846 47061 . + 0 ID=cds-WP_041181902.1;Parent=gene-LLC55_RS00235;Dbxref=Genbank:WP_041181902.1;Name=WP_041181902.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00235;product=hypothetical protein;protein_id=WP_041181902.1;transl_table=11 NZ_CP086200.1 RefSeq gene 47886 48146 . - . ID=gene-LLC55_RS00240;Name=LLC55_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00240;old_locus_tag=LLC55_00240 NZ_CP086200.1 Protein Homology CDS 47886 48146 . - 0 ID=cds-WP_011257122.1;Parent=gene-LLC55_RS00240;Dbxref=Genbank:WP_011257122.1;Name=WP_011257122.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257122.1;locus_tag=LLC55_RS00240;product=hypothetical protein;protein_id=WP_011257122.1;transl_table=11 NZ_CP086200.1 RefSeq gene 48163 48495 . - . ID=gene-LLC55_RS00245;Name=LLC55_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00245;old_locus_tag=LLC55_00245 NZ_CP086200.1 GeneMarkS-2+ CDS 48163 48495 . - 0 ID=cds-WP_027704081.1;Parent=gene-LLC55_RS00245;Dbxref=Genbank:WP_027704081.1;Name=WP_027704081.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00245;product=hypothetical protein;protein_id=WP_027704081.1;transl_table=11 NZ_CP086200.1 RefSeq gene 48495 48953 . - . ID=gene-LLC55_RS00250;Name=LLC55_RS00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00250;old_locus_tag=LLC55_00250 NZ_CP086200.1 Protein Homology CDS 48495 48953 . - 0 ID=cds-WP_080256644.1;Parent=gene-LLC55_RS00250;Dbxref=Genbank:WP_080256644.1;Name=WP_080256644.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:TIGR03696.1;locus_tag=LLC55_RS00250;product=polymorphic toxin type 37 domain-containing protein;protein_id=WP_080256644.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 49069 49293 . - . ID=gene-LLC55_RS00255;Name=LLC55_RS00255;end_range=49293,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00255;old_locus_tag=LLC55_00255;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 49069 49293 . - 0 ID=cds-LLC55_RS00255;Parent=gene-LLC55_RS00255;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=49293,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS00255;partial=true;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 49361 50329 . + . ID=gene-LLC55_RS00260;Name=LLC55_RS00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00260;old_locus_tag=LLC55_00260 NZ_CP086200.1 Protein Homology CDS 49361 50329 . + 0 ID=cds-WP_011258803.1;Parent=gene-LLC55_RS00260;Dbxref=Genbank:WP_011258803.1;Name=WP_011258803.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS00260;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258803.1;transl_table=11 NZ_CP086200.1 RefSeq gene 50473 51687 . - . ID=gene-LLC55_RS00265;Name=LLC55_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00265;old_locus_tag=LLC55_00265 NZ_CP086200.1 Protein Homology CDS 50473 51687 . - 0 ID=cds-WP_011407913.1;Parent=gene-LLC55_RS00265;Dbxref=Genbank:WP_011407913.1;Name=WP_011407913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS00265;product=IS4-like element ISXo14 family transposase;protein_id=WP_011407913.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 51805 52164 . - . ID=gene-LLC55_RS00270;Name=LLC55_RS00270;end_range=52164,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00270;old_locus_tag=LLC55_00270;partial=true;pseudo=true;start_range=.,51805 NZ_CP086200.1 Protein Homology CDS 51805 52164 . - 0 ID=cds-LLC55_RS00270;Parent=gene-LLC55_RS00270;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=52164,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS00270;partial=true;product=IS701 family transposase;pseudo=true;start_range=.,51805;transl_table=11 NZ_CP086200.1 RefSeq gene 52208 53006 . + . ID=gene-LLC55_RS00275;Name=LLC55_RS00275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00275;old_locus_tag=LLC55_00275 NZ_CP086200.1 Protein Homology CDS 52208 52479 . + 0 ID=cds-WP_228329675.1;Parent=gene-LLC55_RS00275;Dbxref=Genbank:WP_228329675.1;Name=WP_228329675.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS00275;product=IS5 family transposase;protein_id=WP_228329675.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 52478 53006 . + 1 ID=cds-WP_228329675.1;Parent=gene-LLC55_RS00275;Dbxref=Genbank:WP_228329675.1;Name=WP_228329675.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS00275;product=IS5 family transposase;protein_id=WP_228329675.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 53014 53760 . - . ID=gene-LLC55_RS00280;Name=LLC55_RS00280;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00280;old_locus_tag=LLC55_00280;partial=true;pseudo=true;start_range=.,53014 NZ_CP086200.1 Protein Homology CDS 53014 53760 . - 0 ID=cds-LLC55_RS00280;Parent=gene-LLC55_RS00280;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS00280;partial=true;product=IS701 family transposase;pseudo=true;start_range=.,53014;transl_table=11 NZ_CP086200.1 RefSeq gene 53811 54623 . - . ID=gene-LLC55_RS00285;Name=LLC55_RS00285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00285;old_locus_tag=LLC55_00285 NZ_CP086200.1 Protein Homology CDS 53811 54623 . - 0 ID=cds-WP_011407194.1;Parent=gene-LLC55_RS00285;Dbxref=Genbank:WP_011407194.1;Name=WP_011407194.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:TIGR01643.1;locus_tag=LLC55_RS00285;product=RHS repeat protein;protein_id=WP_011407194.1;transl_table=11 NZ_CP086200.1 RefSeq gene 54721 55686 . + . ID=gene-LLC55_RS00290;Name=LLC55_RS00290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00290;old_locus_tag=LLC55_00290 NZ_CP086200.1 Protein Homology CDS 54721 55686 . + 0 ID=cds-WP_109182053.1;Parent=gene-LLC55_RS00290;Dbxref=Genbank:WP_109182053.1;Name=WP_109182053.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS00290;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182053.1;transl_table=11 NZ_CP086200.1 RefSeq gene 55683 55961 . - . ID=gene-LLC55_RS00295;Name=LLC55_RS00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00295;old_locus_tag=LLC55_00295 NZ_CP086200.1 GeneMarkS-2+ CDS 55683 55961 . - 0 ID=cds-WP_125168734.1;Parent=gene-LLC55_RS00295;Dbxref=Genbank:WP_125168734.1;Name=WP_125168734.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00295;product=RHS repeat protein;protein_id=WP_125168734.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 56105 57423 . + . ID=gene-LLC55_RS00300;Name=LLC55_RS00300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00300;old_locus_tag=LLC55_00300;pseudo=true NZ_CP086200.1 Protein Homology CDS 56105 57423 . + 0 ID=cds-LLC55_RS00300;Parent=gene-LLC55_RS00300;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS00300;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 57541 58587 . + . ID=gene-LLC55_RS00305;Name=LLC55_RS00305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00305;old_locus_tag=LLC55_00305 NZ_CP086200.1 Protein Homology CDS 57541 58587 . + 0 ID=cds-WP_011407197.1;Parent=gene-LLC55_RS00305;Dbxref=Genbank:WP_011407197.1;Name=WP_011407197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449750.1;locus_tag=LLC55_RS00305;product=methylamine utilization protein;protein_id=WP_011407197.1;transl_table=11 NZ_CP086200.1 RefSeq gene 58600 58676 . - . ID=gene-LLC55_RS00310;Name=LLC55_RS00310;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS00310;old_locus_tag=LLC55_00310 NZ_CP086200.1 cmsearch ncRNA 58600 58676 . - . ID=rna-LLC55_RS00310;Parent=gene-LLC55_RS00310;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00310;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 58600 58676 . - . ID=exon-LLC55_RS00310-1;Parent=rna-LLC55_RS00310;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00310;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 58728 59225 . - . ID=gene-LLC55_RS00315;Name=LLC55_RS00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00315;old_locus_tag=LLC55_00315 NZ_CP086200.1 GeneMarkS-2+ CDS 58728 59225 . - 0 ID=cds-WP_011407198.1;Parent=gene-LLC55_RS00315;Dbxref=Genbank:WP_011407198.1;Name=WP_011407198.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00315;product=hypothetical protein;protein_id=WP_011407198.1;transl_table=11 NZ_CP086200.1 RefSeq gene 59389 60021 . - . ID=gene-LLC55_RS00320;Name=LLC55_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00320;old_locus_tag=LLC55_00320 NZ_CP086200.1 Protein Homology CDS 59389 60021 . - 0 ID=cds-WP_027703730.1;Parent=gene-LLC55_RS00320;Dbxref=Genbank:WP_027703730.1;Name=WP_027703730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301281.1;locus_tag=LLC55_RS00320;product=NAD(P)H-binding protein;protein_id=WP_027703730.1;transl_table=11 NZ_CP086200.1 RefSeq gene 60038 62200 . - . ID=gene-LLC55_RS00325;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=LLC55_RS00325;old_locus_tag=LLC55_00325 NZ_CP086200.1 Protein Homology CDS 60038 62200 . - 0 ID=cds-WP_011257110.1;Parent=gene-LLC55_RS00325;Dbxref=Genbank:WP_011257110.1;Name=WP_011257110.1;Ontology_term=GO:0005980,GO:0004133;gbkey=CDS;gene=glgX;go_function=glycogen debranching enzyme activity|0004133||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382022.1;locus_tag=LLC55_RS00325;product=glycogen debranching protein GlgX;protein_id=WP_011257110.1;transl_table=11 NZ_CP086200.1 RefSeq gene 62315 62500 . - . ID=gene-LLC55_RS00330;Name=LLC55_RS00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00330;old_locus_tag=LLC55_00330 NZ_CP086200.1 Protein Homology CDS 62315 62500 . - 0 ID=cds-WP_011407199.1;Parent=gene-LLC55_RS00330;Dbxref=Genbank:WP_011407199.1;Name=WP_011407199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158479.1;locus_tag=LLC55_RS00330;product=DUF2934 domain-containing protein;protein_id=WP_011407199.1;transl_table=11 NZ_CP086200.1 RefSeq gene 62523 65126 . - . ID=gene-LLC55_RS00335;Name=treY;gbkey=Gene;gene=treY;gene_biotype=protein_coding;locus_tag=LLC55_RS00335;old_locus_tag=LLC55_00335 NZ_CP086200.1 Protein Homology CDS 62523 65126 . - 0 ID=cds-WP_011257109.1;Parent=gene-LLC55_RS00335;Dbxref=Genbank:WP_011257109.1;Name=WP_011257109.1;Ontology_term=GO:0005992,GO:0047470;gbkey=CDS;gene=treY;go_function=(1%2C4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity|0047470||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505122.1;locus_tag=LLC55_RS00335;product=malto-oligosyltrehalose synthase;protein_id=WP_011257109.1;transl_table=11 NZ_CP086200.1 RefSeq gene 65123 67012 . - . ID=gene-LLC55_RS00340;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=LLC55_RS00340;old_locus_tag=LLC55_00340 NZ_CP086200.1 Protein Homology CDS 65123 67012 . - 0 ID=cds-WP_094187819.1;Parent=gene-LLC55_RS00340;Dbxref=Genbank:WP_094187819.1;Name=WP_094187819.1;Ontology_term=GO:0005980,GO:0004134;gbkey=CDS;gene=malQ;go_function=4-alpha-glucanotransferase activity|0004134||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997588.1;locus_tag=LLC55_RS00340;product=4-alpha-glucanotransferase;protein_id=WP_094187819.1;transl_table=11 NZ_CP086200.1 RefSeq gene 67069 68826 . - . ID=gene-LLC55_RS00345;Name=treZ;gbkey=Gene;gene=treZ;gene_biotype=protein_coding;locus_tag=LLC55_RS00345;old_locus_tag=LLC55_00345 NZ_CP086200.1 Protein Homology CDS 67069 68826 . - 0 ID=cds-WP_011257107.1;Parent=gene-LLC55_RS00345;Dbxref=Genbank:WP_011257107.1;Name=WP_011257107.1;Ontology_term=GO:0005992,GO:0016798;gbkey=CDS;gene=treZ;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156528.1;locus_tag=LLC55_RS00345;product=malto-oligosyltrehalose trehalohydrolase;protein_id=WP_011257107.1;transl_table=11 NZ_CP086200.1 RefSeq gene 68829 71063 . - . ID=gene-LLC55_RS00350;Name=LLC55_RS00350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00350;old_locus_tag=LLC55_00350 NZ_CP086200.1 Protein Homology CDS 68829 71063 . - 0 ID=cds-WP_011407200.1;Parent=gene-LLC55_RS00350;Dbxref=Genbank:WP_011407200.1;Name=WP_011407200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161584.1;locus_tag=LLC55_RS00350;product=1%2C4-alpha-glucan branching enzyme;protein_id=WP_011407200.1;transl_table=11 NZ_CP086200.1 RefSeq gene 71060 72643 . - . ID=gene-LLC55_RS00355;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=LLC55_RS00355;old_locus_tag=LLC55_00355 NZ_CP086200.1 Protein Homology CDS 71060 72643 . - 0 ID=cds-WP_027703733.1;Parent=gene-LLC55_RS00355;Dbxref=Genbank:WP_027703733.1;Name=WP_027703733.1;Ontology_term=GO:0004373;gbkey=CDS;gene=glgA;go_function=glycogen (starch) synthase activity|0004373||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575489.1;locus_tag=LLC55_RS00355;product=glycogen synthase GlgA;protein_id=WP_027703733.1;transl_table=11 NZ_CP086200.1 RefSeq gene 73117 74745 . + . ID=gene-LLC55_RS00360;Name=LLC55_RS00360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00360;old_locus_tag=LLC55_00360 NZ_CP086200.1 Protein Homology CDS 73117 74745 . + 0 ID=cds-WP_011257104.1;Parent=gene-LLC55_RS00360;Dbxref=Genbank:WP_011257104.1;Name=WP_011257104.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089156.1;locus_tag=LLC55_RS00360;product=GGDEF domain-containing protein;protein_id=WP_011257104.1;transl_table=11 NZ_CP086200.1 RefSeq gene 74742 76106 . - . ID=gene-LLC55_RS00365;Name=LLC55_RS00365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00365;old_locus_tag=LLC55_00365 NZ_CP086200.1 Protein Homology CDS 74742 76106 . - 0 ID=cds-WP_011257103.1;Parent=gene-LLC55_RS00365;Dbxref=Genbank:WP_011257103.1;Name=WP_011257103.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301290.1;locus_tag=LLC55_RS00365;product=glycoside hydrolase family 10 protein;protein_id=WP_011257103.1;transl_table=11 NZ_CP086200.1 RefSeq gene 76299 77240 . - . ID=gene-LLC55_RS00370;Name=LLC55_RS00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00370;old_locus_tag=LLC55_00370 NZ_CP086200.1 Protein Homology CDS 76299 77240 . - 0 ID=cds-WP_011257102.1;Parent=gene-LLC55_RS00370;Dbxref=Genbank:WP_011257102.1;Name=WP_011257102.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367950.1;locus_tag=LLC55_RS00370;product=DUF808 domain-containing protein;protein_id=WP_011257102.1;transl_table=11 NZ_CP086200.1 RefSeq gene 77298 79205 . + . ID=gene-LLC55_RS00375;Name=LLC55_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00375;old_locus_tag=LLC55_00375 NZ_CP086200.1 Protein Homology CDS 77298 79205 . + 0 ID=cds-WP_027703735.1;Parent=gene-LLC55_RS00375;Dbxref=Genbank:WP_027703735.1;Name=WP_027703735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158895.1;locus_tag=LLC55_RS00375;product=ABC transporter substrate-binding protein;protein_id=WP_027703735.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 79212 79801 . - . ID=gene-LLC55_RS00380;Name=LLC55_RS00380;end_range=79801,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00380;old_locus_tag=LLC55_00380;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 79212 79801 . - 0 ID=cds-LLC55_RS00380;Parent=gene-LLC55_RS00380;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=79801,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS00380;partial=true;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 79885 80851 . + . ID=gene-LLC55_RS00385;Name=LLC55_RS00385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00385;old_locus_tag=LLC55_00385;pseudo=true NZ_CP086200.1 Protein Homology CDS 79885 80851 . + 0 ID=cds-LLC55_RS00385;Parent=gene-LLC55_RS00385;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS00385;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 80857 81042 . - . ID=gene-LLC55_RS00390;Name=LLC55_RS00390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00390;old_locus_tag=LLC55_00390;partial=true;pseudo=true;start_range=.,80857 NZ_CP086200.1 Protein Homology CDS 80857 81042 . - 0 ID=cds-LLC55_RS00390;Parent=gene-LLC55_RS00390;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS00390;partial=true;product=transposase;pseudo=true;start_range=.,80857;transl_table=11 NZ_CP086200.1 RefSeq gene 81102 81362 . + . ID=gene-LLC55_RS00395;Name=LLC55_RS00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00395;old_locus_tag=LLC55_00395 NZ_CP086200.1 Protein Homology CDS 81102 81362 . + 0 ID=cds-WP_011407204.1;Parent=gene-LLC55_RS00395;Dbxref=Genbank:WP_011407204.1;Name=WP_011407204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407204.1;locus_tag=LLC55_RS00395;product=hypothetical protein;protein_id=WP_011407204.1;transl_table=11 NZ_CP086200.1 RefSeq gene 81381 83771 . - . ID=gene-LLC55_RS00400;Name=LLC55_RS00400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00400;old_locus_tag=LLC55_00400 NZ_CP086200.1 Protein Homology CDS 81381 83771 . - 0 ID=cds-WP_228329731.1;Parent=gene-LLC55_RS00400;Dbxref=Genbank:WP_228329731.1;Name=WP_228329731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928375.1;locus_tag=LLC55_RS00400;product=DUF3772 domain-containing protein;protein_id=WP_228329731.1;transl_table=11 NZ_CP086200.1 RefSeq gene 84124 84465 . + . ID=gene-LLC55_RS00405;Name=LLC55_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00405;old_locus_tag=LLC55_00405 NZ_CP086200.1 Protein Homology CDS 84124 84465 . + 0 ID=cds-WP_011257097.1;Parent=gene-LLC55_RS00405;Dbxref=Genbank:WP_011257097.1;Name=WP_011257097.1;Ontology_term=GO:0044238;gbkey=CDS;go_process=primary metabolic process|0044238||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974834.1;locus_tag=LLC55_RS00405;product=HPF/RaiA family ribosome-associated protein;protein_id=WP_011257097.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 84609 85667 . + . ID=gene-LLC55_RS00410;Name=LLC55_RS00410;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00410;old_locus_tag=LLC55_00410;pseudo=true NZ_CP086200.1 Protein Homology CDS 84609 85667 . + 0 ID=cds-LLC55_RS00410;Parent=gene-LLC55_RS00410;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408472.1;locus_tag=LLC55_RS00410;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 86682 88235 . + . ID=gene-LLC55_RS00415;Name=LLC55_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00415;old_locus_tag=LLC55_00415 NZ_CP086200.1 Protein Homology CDS 86682 88235 . + 0 ID=cds-WP_011257094.1;Parent=gene-LLC55_RS00415;Dbxref=Genbank:WP_011257094.1;Name=WP_011257094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304790.1;locus_tag=LLC55_RS00415;product=hypothetical protein;protein_id=WP_011257094.1;transl_table=11 NZ_CP086200.1 RefSeq gene 88699 89262 . - . ID=gene-LLC55_RS00420;Name=LLC55_RS00420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00420;old_locus_tag=LLC55_00420 NZ_CP086200.1 Protein Homology CDS 88699 89262 . - 0 ID=cds-WP_011257093.1;Parent=gene-LLC55_RS00420;Dbxref=Genbank:WP_011257093.1;Name=WP_011257093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156519.1;locus_tag=LLC55_RS00420;product=lytic transglycosylase domain-containing protein;protein_id=WP_011257093.1;transl_table=11 NZ_CP086200.1 RefSeq gene 89638 90057 . + . ID=gene-LLC55_RS00425;Name=LLC55_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00425;old_locus_tag=LLC55_00425 NZ_CP086200.1 Protein Homology CDS 89638 90057 . + 0 ID=cds-WP_011257092.1;Parent=gene-LLC55_RS00425;Dbxref=Genbank:WP_011257092.1;Name=WP_011257092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257092.1;locus_tag=LLC55_RS00425;product=hypothetical protein;protein_id=WP_011257092.1;transl_table=11 NZ_CP086200.1 RefSeq gene 90796 92613 . - . ID=gene-LLC55_RS00430;Name=sctC;gbkey=Gene;gene=sctC;gene_biotype=protein_coding;locus_tag=LLC55_RS00430;old_locus_tag=LLC55_00430 NZ_CP086200.1 Protein Homology CDS 90796 92613 . - 0 ID=cds-WP_011257091.1;Parent=gene-LLC55_RS00430;Dbxref=Genbank:WP_011257091.1;Name=WP_011257091.1;gbkey=CDS;gene=sctC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972464.1;locus_tag=LLC55_RS00430;product=type III secretion system outer membrane ring subunit SctC;protein_id=WP_011257091.1;transl_table=11 NZ_CP086200.1 RefSeq gene 92696 93526 . - . ID=gene-LLC55_RS00435;Name=sctT;gbkey=Gene;gene=sctT;gene_biotype=protein_coding;locus_tag=LLC55_RS00435;old_locus_tag=LLC55_00435 NZ_CP086200.1 Protein Homology CDS 92696 93526 . - 0 ID=cds-WP_011257090.1;Parent=gene-LLC55_RS00435;Dbxref=Genbank:WP_011257090.1;Name=WP_011257090.1;Ontology_term=GO:0030254;gbkey=CDS;gene=sctT;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089146.1;locus_tag=LLC55_RS00435;product=type III secretion system export apparatus subunit SctT;protein_id=WP_011257090.1;transl_table=11 NZ_CP086200.1 RefSeq gene 93523 94032 . - . ID=gene-LLC55_RS00440;Name=LLC55_RS00440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00440;old_locus_tag=LLC55_00440 NZ_CP086200.1 Protein Homology CDS 93523 94032 . - 0 ID=cds-WP_011257089.1;Parent=gene-LLC55_RS00440;Dbxref=Genbank:WP_011257089.1;Name=WP_011257089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050300.1;locus_tag=LLC55_RS00440;product=type III secretion protein HrpB7;protein_id=WP_011257089.1;transl_table=11 NZ_CP086200.1 RefSeq gene 94025 95353 . - . ID=gene-LLC55_RS00445;Name=sctN;gbkey=Gene;gene=sctN;gene_biotype=protein_coding;locus_tag=LLC55_RS00445;old_locus_tag=LLC55_00445 NZ_CP086200.1 Protein Homology CDS 94025 95353 . - 0 ID=cds-WP_069964475.1;Parent=gene-LLC55_RS00445;Dbxref=Genbank:WP_069964475.1;Name=WP_069964475.1;Ontology_term=GO:0030254,GO:0046961,GO:0030257;gbkey=CDS;gene=sctN;go_component=type III protein secretion system complex|0030257||IEA;go_function=proton-transporting ATPase activity%2C rotational mechanism|0046961||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972469.1;locus_tag=LLC55_RS00445;product=type III secretion system ATPase SctN;protein_id=WP_069964475.1;transl_table=11 NZ_CP086200.1 RefSeq gene 95343 96044 . - . ID=gene-LLC55_RS00450;Name=sctL;gbkey=Gene;gene=sctL;gene_biotype=protein_coding;locus_tag=LLC55_RS00450;old_locus_tag=LLC55_00450 NZ_CP086200.1 Protein Homology CDS 95343 96044 . - 0 ID=cds-WP_011257087.1;Parent=gene-LLC55_RS00450;Dbxref=Genbank:WP_011257087.1;Name=WP_011257087.1;Ontology_term=GO:0030254,GO:0030257;gbkey=CDS;gene=sctL;go_component=type III protein secretion system complex|0030257||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089143.1;locus_tag=LLC55_RS00450;product=type III secretion system stator protein SctL;protein_id=WP_011257087.1;transl_table=11 NZ_CP086200.1 RefSeq gene 96029 96658 . - . ID=gene-LLC55_RS00455;Name=LLC55_RS00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00455;old_locus_tag=LLC55_00455 NZ_CP086200.1 Protein Homology CDS 96029 96658 . - 0 ID=cds-WP_044756180.1;Parent=gene-LLC55_RS00455;Dbxref=Genbank:WP_044756180.1;Name=WP_044756180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171652.1;locus_tag=LLC55_RS00455;product=type III secretion protein HrpB4;protein_id=WP_044756180.1;transl_table=11 NZ_CP086200.1 RefSeq gene 96666 97427 . - . ID=gene-LLC55_RS00460;Name=sctJ;gbkey=Gene;gene=sctJ;gene_biotype=protein_coding;locus_tag=LLC55_RS00460;old_locus_tag=LLC55_00460 NZ_CP086200.1 Protein Homology CDS 96666 97427 . - 0 ID=cds-WP_011257085.1;Parent=gene-LLC55_RS00460;Dbxref=Genbank:WP_011257085.1;Name=WP_011257085.1;Ontology_term=GO:0030254;gbkey=CDS;gene=sctJ;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965380.1;locus_tag=LLC55_RS00460;product=type III secretion inner membrane ring lipoprotein SctJ;protein_id=WP_011257085.1;transl_table=11 NZ_CP086200.1 RefSeq gene 97429 97821 . - . ID=gene-LLC55_RS00465;Name=LLC55_RS00465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00465;old_locus_tag=LLC55_00465 NZ_CP086200.1 Protein Homology CDS 97429 97821 . - 0 ID=cds-WP_011407211.1;Parent=gene-LLC55_RS00465;Dbxref=Genbank:WP_011407211.1;Name=WP_011407211.1;Ontology_term=GO:0030254,GO:0003824,GO:0030257;gbkey=CDS;go_component=type III protein secretion system complex|0030257||IEA;go_function=catalytic activity|0003824||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505147.1;locus_tag=LLC55_RS00465;product=type III secretion protein HrpB2;protein_id=WP_011407211.1;transl_table=11 NZ_CP086200.1 RefSeq gene 97855 98310 . - . ID=gene-LLC55_RS00470;Name=LLC55_RS00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00470;old_locus_tag=LLC55_00470 NZ_CP086200.1 Protein Homology CDS 97855 98310 . - 0 ID=cds-WP_011257083.1;Parent=gene-LLC55_RS00470;Dbxref=Genbank:WP_011257083.1;Name=WP_011257083.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156509.1;locus_tag=LLC55_RS00470;product=HrpB1 family type III secretion system apparatus protein;protein_id=WP_011257083.1;transl_table=11 NZ_CP086200.1 RefSeq gene 98525 99604 . + . ID=gene-LLC55_RS00475;Name=sctU;gbkey=Gene;gene=sctU;gene_biotype=protein_coding;locus_tag=LLC55_RS00475;old_locus_tag=LLC55_00475 NZ_CP086200.1 Protein Homology CDS 98525 99604 . + 0 ID=cds-WP_012443605.1;Parent=gene-LLC55_RS00475;Dbxref=Genbank:WP_012443605.1;Name=WP_012443605.1;Ontology_term=GO:0030254;gbkey=CDS;gene=sctU;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912703.1;locus_tag=LLC55_RS00475;product=type III secretion system export apparatus subunit SctU;protein_id=WP_012443605.1;transl_table=11 NZ_CP086200.1 RefSeq gene 99598 101535 . + . ID=gene-LLC55_RS00480;Name=LLC55_RS00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00480;old_locus_tag=LLC55_00480 NZ_CP086200.1 Protein Homology CDS 99598 101535 . + 0 ID=cds-WP_011257081.1;Parent=gene-LLC55_RS00480;Dbxref=Genbank:WP_011257081.1;Name=WP_011257081.1;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_046934829.1;locus_tag=LLC55_RS00480;product=FHIPEP family type III secretion protein;protein_id=WP_011257081.1;transl_table=11 NZ_CP086200.1 RefSeq gene 101535 102176 . + . ID=gene-LLC55_RS00485;Name=sctP;gbkey=Gene;gene=sctP;gene_biotype=protein_coding;locus_tag=LLC55_RS00485;old_locus_tag=LLC55_00485 NZ_CP086200.1 Protein Homology CDS 101535 102176 . + 0 ID=cds-WP_113085555.1;Parent=gene-LLC55_RS00485;Dbxref=Genbank:WP_113085555.1;Name=WP_113085555.1;gbkey=CDS;gene=sctP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575445.1;locus_tag=LLC55_RS00485;product=type III secretion system protein SctP;protein_id=WP_113085555.1;transl_table=11 NZ_CP086200.1 RefSeq gene 102269 103222 . + . ID=gene-LLC55_RS00490;Name=sctQ;gbkey=Gene;gene=sctQ;gene_biotype=protein_coding;locus_tag=LLC55_RS00490;old_locus_tag=LLC55_00490 NZ_CP086200.1 Protein Homology CDS 102269 103222 . + 0 ID=cds-WP_027704248.1;Parent=gene-LLC55_RS00490;Dbxref=Genbank:WP_027704248.1;Name=WP_027704248.1;Ontology_term=GO:0030254,GO:0030257;gbkey=CDS;gene=sctQ;go_component=type III protein secretion system complex|0030257||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156505.1;locus_tag=LLC55_RS00490;product=type III secretion system cytoplasmic ring protein SctQ;protein_id=WP_027704248.1;transl_table=11 NZ_CP086200.1 RefSeq gene 103209 103853 . + . ID=gene-LLC55_RS00495;Name=sctR;gbkey=Gene;gene=sctR;gene_biotype=protein_coding;locus_tag=LLC55_RS00495;old_locus_tag=LLC55_00495 NZ_CP086200.1 Protein Homology CDS 103209 103853 . + 0 ID=cds-WP_011407215.1;Parent=gene-LLC55_RS00495;Dbxref=Genbank:WP_011407215.1;Name=WP_011407215.1;Ontology_term=GO:0030254,GO:0030257;gbkey=CDS;gene=sctR;go_component=type III protein secretion system complex|0030257||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158888.1;locus_tag=LLC55_RS00495;product=type III secretion system export apparatus subunit SctR;protein_id=WP_011407215.1;transl_table=11 NZ_CP086200.1 RefSeq gene 103858 104118 . + . ID=gene-LLC55_RS00500;Name=sctS;gbkey=Gene;gene=sctS;gene_biotype=protein_coding;locus_tag=LLC55_RS00500;old_locus_tag=LLC55_00500 NZ_CP086200.1 Protein Homology CDS 103858 104118 . + 0 ID=cds-WP_011257077.1;Parent=gene-LLC55_RS00500;Dbxref=Genbank:WP_011257077.1;Name=WP_011257077.1;Ontology_term=GO:0030254;gbkey=CDS;gene=sctS;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901415.1;locus_tag=LLC55_RS00500;product=type III secretion system export apparatus subunit SctS;protein_id=WP_011257077.1;transl_table=11 NZ_CP086200.1 RefSeq gene 104115 104942 . + . ID=gene-LLC55_RS00505;Name=LLC55_RS00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00505;old_locus_tag=LLC55_00505 NZ_CP086200.1 Protein Homology CDS 104115 104942 . + 0 ID=cds-WP_011257076.1;Parent=gene-LLC55_RS00505;Dbxref=Genbank:WP_011257076.1;Name=WP_011257076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156504.1;locus_tag=LLC55_RS00505;product=hypothetical protein;protein_id=WP_011257076.1;transl_table=11 NZ_CP086200.1 RefSeq gene 104939 105877 . + . ID=gene-LLC55_RS00510;Name=LLC55_RS00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00510;old_locus_tag=LLC55_00510 NZ_CP086200.1 Protein Homology CDS 104939 105877 . + 0 ID=cds-WP_011257075.1;Parent=gene-LLC55_RS00510;Dbxref=Genbank:WP_011257075.1;Name=WP_011257075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965398.1;locus_tag=LLC55_RS00510;product=hypothetical protein;protein_id=WP_011257075.1;transl_table=11 NZ_CP086200.1 RefSeq gene 105887 106129 . + . ID=gene-LLC55_RS00515;Name=LLC55_RS00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00515;old_locus_tag=LLC55_00515 NZ_CP086200.1 Protein Homology CDS 105887 106129 . + 0 ID=cds-WP_011257074.1;Parent=gene-LLC55_RS00515;Dbxref=Genbank:WP_011257074.1;Name=WP_011257074.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301127.1;locus_tag=LLC55_RS00515;product=hypothetical protein;protein_id=WP_011257074.1;transl_table=11 NZ_CP086200.1 RefSeq gene 106210 106491 . + . ID=gene-LLC55_RS00520;Name=LLC55_RS00520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00520;old_locus_tag=LLC55_00520 NZ_CP086200.1 GeneMarkS-2+ CDS 106210 106491 . + 0 ID=cds-WP_011257073.1;Parent=gene-LLC55_RS00520;Dbxref=Genbank:WP_011257073.1;Name=WP_011257073.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00520;product=hypothetical protein;protein_id=WP_011257073.1;transl_table=11 NZ_CP086200.1 RefSeq gene 106546 107016 . + . ID=gene-LLC55_RS00525;Name=LLC55_RS00525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00525;old_locus_tag=LLC55_00525 NZ_CP086200.1 Protein Homology CDS 106546 107016 . + 0 ID=cds-WP_011257072.1;Parent=gene-LLC55_RS00525;Dbxref=Genbank:WP_011257072.1;Name=WP_011257072.1;Ontology_term=GO:0030254;gbkey=CDS;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912720.1;locus_tag=LLC55_RS00525;product=CesT family type III secretion system chaperone;protein_id=WP_011257072.1;transl_table=11 NZ_CP086200.1 RefSeq gene 107249 107325 . + . ID=gene-LLC55_RS00530;Name=LLC55_RS00530;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS00530;old_locus_tag=LLC55_00530 NZ_CP086200.1 cmsearch ncRNA 107249 107325 . + . ID=rna-LLC55_RS00530;Parent=gene-LLC55_RS00530;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00530;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 107249 107325 . + . ID=exon-LLC55_RS00530-1;Parent=rna-LLC55_RS00530;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00530;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 107431 109416 . - . ID=gene-LLC55_RS00535;Name=xopF1;gbkey=Gene;gene=xopF1;gene_biotype=protein_coding;locus_tag=LLC55_RS00535;old_locus_tag=LLC55_00535 NZ_CP086200.1 Protein Homology CDS 107431 109416 . - 0 ID=cds-WP_011257071.1;Parent=gene-LLC55_RS00535;Dbxref=Genbank:WP_011257071.1;Name=WP_011257071.1;Ontology_term=GO:0030254;gbkey=CDS;gene=xopF1;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257071.1;locus_tag=LLC55_RS00535;product=type III secretion system effector protein XopF1;protein_id=WP_011257071.1;transl_table=11 NZ_CP086200.1 RefSeq gene 109413 109859 . - . ID=gene-LLC55_RS00540;Name=LLC55_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00540;old_locus_tag=LLC55_00540 NZ_CP086200.1 Protein Homology CDS 109413 109859 . - 0 ID=cds-WP_011407217.1;Parent=gene-LLC55_RS00540;Dbxref=Genbank:WP_011407217.1;Name=WP_011407217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367891.1;locus_tag=LLC55_RS00540;product=hypothetical protein;protein_id=WP_011407217.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 110088 111406 . - . ID=gene-LLC55_RS00545;Name=LLC55_RS00545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00545;old_locus_tag=LLC55_00545;pseudo=true NZ_CP086200.1 Protein Homology CDS 110088 111406 . - 0 ID=cds-LLC55_RS00545;Parent=gene-LLC55_RS00545;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS00545;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 111581 111862 . - . ID=gene-LLC55_RS00550;Name=LLC55_RS00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00550;old_locus_tag=LLC55_00550 NZ_CP086200.1 GeneMarkS-2+ CDS 111581 111862 . - 0 ID=cds-WP_113085543.1;Parent=gene-LLC55_RS00550;Dbxref=Genbank:WP_113085543.1;Name=WP_113085543.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00550;product=hypothetical protein;protein_id=WP_113085543.1;transl_table=11 NZ_CP086200.1 RefSeq gene 111991 114399 . + . ID=gene-LLC55_RS00555;Name=LLC55_RS00555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00555;old_locus_tag=LLC55_00555 NZ_CP086200.1 Protein Homology CDS 111991 114399 . + 0 ID=cds-WP_113085544.1;Parent=gene-LLC55_RS00555;Dbxref=Genbank:WP_113085544.1;Name=WP_113085544.1;Ontology_term=GO:0009877;gbkey=CDS;go_process=nodulation|0009877||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160376.1;locus_tag=LLC55_RS00555;product=HrpF/NolX family T3SS translocon protein;protein_id=WP_113085544.1;transl_table=11 NZ_CP086200.1 RefSeq gene 115465 116904 . + . ID=gene-LLC55_RS00560;Name=LLC55_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00560;old_locus_tag=LLC55_00560 NZ_CP086200.1 Protein Homology CDS 115465 116904 . + 0 ID=cds-WP_071162348.1;Parent=gene-LLC55_RS00560;Dbxref=Genbank:WP_071162348.1;Name=WP_071162348.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089127.1;locus_tag=LLC55_RS00560;product=type III secretion system effector XopAE;protein_id=WP_071162348.1;transl_table=11 NZ_CP086200.1 RefSeq gene 117216 117292 . - . ID=gene-LLC55_RS00565;Name=LLC55_RS00565;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS00565;old_locus_tag=LLC55_00565 NZ_CP086200.1 cmsearch ncRNA 117216 117292 . - . ID=rna-LLC55_RS00565;Parent=gene-LLC55_RS00565;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00565;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 117216 117292 . - . ID=exon-LLC55_RS00565-1;Parent=rna-LLC55_RS00565;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00565;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 117462 117845 . - . ID=gene-LLC55_RS00570;Name=LLC55_RS00570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00570;old_locus_tag=LLC55_00570 NZ_CP086200.1 Protein Homology CDS 117462 117845 . - 0 ID=cds-WP_011407223.1;Parent=gene-LLC55_RS00570;Dbxref=Genbank:WP_011407223.1;Name=WP_011407223.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117789.1;locus_tag=LLC55_RS00570;product=hypothetical protein;protein_id=WP_011407223.1;transl_table=11 NZ_CP086200.1 RefSeq gene 117842 118327 . - . ID=gene-LLC55_RS00575;Name=LLC55_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00575;old_locus_tag=LLC55_00575 NZ_CP086200.1 Protein Homology CDS 117842 118327 . - 0 ID=cds-WP_011407224.1;Parent=gene-LLC55_RS00575;Dbxref=Genbank:WP_011407224.1;Name=WP_011407224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115391.1;locus_tag=LLC55_RS00575;product=hypothetical protein;protein_id=WP_011407224.1;transl_table=11 NZ_CP086200.1 RefSeq gene 118331 118693 . - . ID=gene-LLC55_RS00580;Name=LLC55_RS00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00580;old_locus_tag=LLC55_00580 NZ_CP086200.1 Protein Homology CDS 118331 118693 . - 0 ID=cds-WP_011407225.1;Parent=gene-LLC55_RS00580;Dbxref=Genbank:WP_011407225.1;Name=WP_011407225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966985.1;locus_tag=LLC55_RS00580;product=hypothetical protein;protein_id=WP_011407225.1;transl_table=11 NZ_CP086200.1 RefSeq gene 118810 120246 . - . ID=gene-LLC55_RS00585;Name=LLC55_RS00585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00585;old_locus_tag=LLC55_00585 NZ_CP086200.1 Protein Homology CDS 118810 120246 . - 0 ID=cds-WP_011257055.1;Parent=gene-LLC55_RS00585;Dbxref=Genbank:WP_011257055.1;Name=WP_011257055.1;Ontology_term=GO:0006508,GO:0006950,GO:0004252,GO:0005515,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257055.1;locus_tag=LLC55_RS00585;product=Do family serine endopeptidase;protein_id=WP_011257055.1;transl_table=11 NZ_CP086200.1 RefSeq gene 120488 121339 . + . ID=gene-LLC55_RS00590;Name=LLC55_RS00590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00590;old_locus_tag=LLC55_00590 NZ_CP086200.1 Protein Homology CDS 120488 121339 . + 0 ID=cds-WP_011407227.1;Parent=gene-LLC55_RS00590;Dbxref=Genbank:WP_011407227.1;Name=WP_011407227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052649.1;locus_tag=LLC55_RS00590;product=histidine biosynthesis protein HisIE;protein_id=WP_011407227.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 121961 122158 . - . ID=gene-LLC55_RS00595;Name=LLC55_RS00595;end_range=122158,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00595;old_locus_tag=LLC55_00595;partial=true;pseudo=true;start_range=.,121961 NZ_CP086200.1 Protein Homology CDS 121961 122158 . - 0 ID=cds-LLC55_RS00595;Parent=gene-LLC55_RS00595;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=122158,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158209.1;locus_tag=LLC55_RS00595;partial=true;product=two-component sensor histidine kinase;pseudo=true;start_range=.,121961;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 122182 122274 . - . ID=gene-LLC55_RS00600;Name=LLC55_RS00600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00600;old_locus_tag=LLC55_00600;partial=true;pseudo=true;start_range=.,122182 NZ_CP086200.1 Protein Homology CDS 122182 122274 . - 0 ID=cds-LLC55_RS00600;Parent=gene-LLC55_RS00600;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091309.1;locus_tag=LLC55_RS00600;partial=true;product=DNA-binding response regulator;pseudo=true;start_range=.,122182;transl_table=11 NZ_CP086200.1 RefSeq gene 122422 123309 . - . ID=gene-LLC55_RS00605;Name=LLC55_RS00605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00605;old_locus_tag=LLC55_00605 NZ_CP086200.1 Protein Homology CDS 122422 123309 . - 0 ID=cds-WP_011257052.1;Parent=gene-LLC55_RS00605;Dbxref=Genbank:WP_011257052.1;Name=WP_011257052.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159091.1;locus_tag=LLC55_RS00605;product=TIGR01777 family oxidoreductase;protein_id=WP_011257052.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 123510 123950 . - . ID=gene-LLC55_RS00610;Name=LLC55_RS00610;end_range=123950,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00610;old_locus_tag=LLC55_00610;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 123510 123950 . - 0 ID=cds-LLC55_RS00610;Parent=gene-LLC55_RS00610;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=123950,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158206.1;locus_tag=LLC55_RS00610;partial=true;product=DUF4142 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 124016 124966 . + . ID=gene-LLC55_RS00615;Name=LLC55_RS00615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00615;old_locus_tag=LLC55_00615 NZ_CP086200.1 Protein Homology CDS 124016 124966 . + 0 ID=cds-WP_069959667.1;Parent=gene-LLC55_RS00615;Dbxref=Genbank:WP_069959667.1;Name=WP_069959667.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407229.1;locus_tag=LLC55_RS00615;product=IS5 family transposase;protein_id=WP_069959667.1;transl_table=11 NZ_CP086200.1 RefSeq gene 125080 125289 . - . ID=gene-LLC55_RS00620;Name=LLC55_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00620;old_locus_tag=LLC55_00620 NZ_CP086200.1 GeneMarkS-2+ CDS 125080 125289 . - 0 ID=cds-WP_143699970.1;Parent=gene-LLC55_RS00620;Dbxref=Genbank:WP_143699970.1;Name=WP_143699970.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00620;product=hypothetical protein;protein_id=WP_143699970.1;transl_table=11 NZ_CP086200.1 RefSeq gene 125357 125617 . - . ID=gene-LLC55_RS00625;Name=LLC55_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00625;old_locus_tag=LLC55_00625 NZ_CP086200.1 Protein Homology CDS 125357 125617 . - 0 ID=cds-WP_011407230.1;Parent=gene-LLC55_RS00625;Dbxref=Genbank:WP_011407230.1;Name=WP_011407230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443586.1;locus_tag=LLC55_RS00625;product=hypothetical protein;protein_id=WP_011407230.1;transl_table=11 NZ_CP086200.1 RefSeq gene 125670 125951 . - . ID=gene-LLC55_RS00630;Name=LLC55_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00630;old_locus_tag=LLC55_00630 NZ_CP086200.1 Protein Homology CDS 125670 125951 . - 0 ID=cds-WP_011257048.1;Parent=gene-LLC55_RS00630;Dbxref=Genbank:WP_011257048.1;Name=WP_011257048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257048.1;locus_tag=LLC55_RS00630;product=hypothetical protein;protein_id=WP_011257048.1;transl_table=11 NZ_CP086200.1 RefSeq gene 126090 127148 . + . ID=gene-LLC55_RS00635;Name=LLC55_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00635;old_locus_tag=LLC55_00635 NZ_CP086200.1 Protein Homology CDS 126090 127148 . + 0 ID=cds-WP_069959669.1;Parent=gene-LLC55_RS00635;Dbxref=Genbank:WP_069959669.1;Name=WP_069959669.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257047.1;locus_tag=LLC55_RS00635;product=IS630 family transposase;protein_id=WP_069959669.1;transl_table=11 NZ_CP086200.1 RefSeq gene 127211 128236 . + . ID=gene-LLC55_RS00640;Name=LLC55_RS00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00640;old_locus_tag=LLC55_00640 NZ_CP086200.1 Protein Homology CDS 127211 128236 . + 0 ID=cds-WP_011257046.1;Parent=gene-LLC55_RS00640;Dbxref=Genbank:WP_011257046.1;Name=WP_011257046.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014403835.1;locus_tag=LLC55_RS00640;product=IS30 family transposase;protein_id=WP_011257046.1;transl_table=11 NZ_CP086200.1 RefSeq gene 128491 128802 . - . ID=gene-LLC55_RS00645;Name=LLC55_RS00645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00645;old_locus_tag=LLC55_00645 NZ_CP086200.1 Protein Homology CDS 128491 128802 . - 0 ID=cds-WP_011407233.1;Parent=gene-LLC55_RS00645;Dbxref=Genbank:WP_011407233.1;Name=WP_011407233.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257045.1;locus_tag=LLC55_RS00645;product=hypothetical protein;protein_id=WP_011407233.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 128799 129866 . - . ID=gene-LLC55_RS00650;Name=LLC55_RS00650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00650;old_locus_tag=LLC55_00650;pseudo=true NZ_CP086200.1 Protein Homology CDS 128799 129866 . - 0 ID=cds-LLC55_RS00650;Parent=gene-LLC55_RS00650;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163989.1;locus_tag=LLC55_RS00650;product=M4 family metallopeptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 129977 130153 . - . ID=gene-LLC55_RS00655;Name=LLC55_RS00655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00655;old_locus_tag=LLC55_00655 NZ_CP086200.1 Protein Homology CDS 129977 130153 . - 0 ID=cds-WP_011257044.1;Parent=gene-LLC55_RS00655;Dbxref=Genbank:WP_011257044.1;Name=WP_011257044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257044.1;locus_tag=LLC55_RS00655;product=hypothetical protein;protein_id=WP_011257044.1;transl_table=11 NZ_CP086200.1 RefSeq gene 130269 130739 . + . ID=gene-LLC55_RS00660;Name=LLC55_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00660;old_locus_tag=LLC55_00660 NZ_CP086200.1 Protein Homology CDS 130269 130739 . + 0 ID=cds-WP_027704036.1;Parent=gene-LLC55_RS00660;Dbxref=Genbank:WP_027704036.1;Name=WP_027704036.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302281.1;locus_tag=LLC55_RS00660;product=NUDIX domain-containing protein;protein_id=WP_027704036.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 130855 131531 . + . ID=gene-LLC55_RS00665;Name=LLC55_RS00665;end_range=131531,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00665;old_locus_tag=LLC55_00665;partial=true;pseudo=true;start_range=.,130855 NZ_CP086200.1 Protein Homology CDS 130855 131531 . + 0 ID=cds-LLC55_RS00665;Parent=gene-LLC55_RS00665;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=131531,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171597.1;locus_tag=LLC55_RS00665;partial=true;product=Zn-dependent protease with chaperone function;pseudo=true;start_range=.,130855;transl_table=11 NZ_CP086200.1 RefSeq gene 131693 132091 . + . ID=gene-LLC55_RS00670;Name=LLC55_RS00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00670;old_locus_tag=LLC55_00670 NZ_CP086200.1 Protein Homology CDS 131693 132091 . + 0 ID=cds-WP_011257041.1;Parent=gene-LLC55_RS00670;Dbxref=Genbank:WP_011257041.1;Name=WP_011257041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809798.1;locus_tag=LLC55_RS00670;product=host attachment family protein;protein_id=WP_011257041.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 132112 132440 . + . ID=gene-LLC55_RS00675;Name=LLC55_RS00675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00675;old_locus_tag=LLC55_00675;pseudo=true NZ_CP086200.1 Protein Homology CDS 132112 132440 . + 0 ID=cds-LLC55_RS00675;Parent=gene-LLC55_RS00675;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364642.1;locus_tag=LLC55_RS00675;product=thioredoxin family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 132524 132605 . - . ID=gene-LLC55_RS00680;Name=LLC55_RS00680;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS00680;old_locus_tag=LLC55_00680 NZ_CP086200.1 cmsearch ncRNA 132524 132605 . - . ID=rna-LLC55_RS00680;Parent=gene-LLC55_RS00680;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00680;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 132524 132605 . - . ID=exon-LLC55_RS00680-1;Parent=rna-LLC55_RS00680;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00680;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 132893 133849 . + . ID=gene-LLC55_RS00685;Name=LLC55_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00685;old_locus_tag=LLC55_00685 NZ_CP086200.1 Protein Homology CDS 132893 133849 . + 0 ID=cds-WP_011407237.1;Parent=gene-LLC55_RS00685;Dbxref=Genbank:WP_011407237.1;Name=WP_011407237.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS00685;product=IS30-like element IS1112a family transposase;protein_id=WP_011407237.1;transl_table=11 NZ_CP086200.1 RefSeq gene 133824 134294 . - . ID=gene-LLC55_RS00690;Name=LLC55_RS00690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00690;old_locus_tag=LLC55_00690 NZ_CP086200.1 GeneMarkS-2+ CDS 133824 134294 . - 0 ID=cds-WP_044756192.1;Parent=gene-LLC55_RS00690;Dbxref=Genbank:WP_044756192.1;Name=WP_044756192.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS00690;product=hypothetical protein;protein_id=WP_044756192.1;transl_table=11 NZ_CP086200.1 RefSeq gene 134486 135739 . + . ID=gene-LLC55_RS00695;Name=LLC55_RS00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00695;old_locus_tag=LLC55_00695 NZ_CP086200.1 Protein Homology CDS 134486 135739 . + 0 ID=cds-WP_044756194.1;Parent=gene-LLC55_RS00695;Dbxref=Genbank:WP_044756194.1;Name=WP_044756194.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348902.1;locus_tag=LLC55_RS00695;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_044756194.1;transl_table=11 NZ_CP086200.1 RefSeq gene 136085 136774 . + . ID=gene-LLC55_RS00700;Name=LLC55_RS00700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00700;old_locus_tag=LLC55_00700 NZ_CP086200.1 Protein Homology CDS 136085 136774 . + 0 ID=cds-WP_069960122.1;Parent=gene-LLC55_RS00700;Dbxref=Genbank:WP_069960122.1;Name=WP_069960122.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407239.1;locus_tag=LLC55_RS00700;product=ABC transporter ATP-binding protein;protein_id=WP_069960122.1;transl_table=11 NZ_CP086200.1 RefSeq gene 136787 137944 . + . ID=gene-LLC55_RS00705;Name=LLC55_RS00705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00705;old_locus_tag=LLC55_00705 NZ_CP086200.1 Protein Homology CDS 136787 137944 . + 0 ID=cds-WP_011257145.1;Parent=gene-LLC55_RS00705;Dbxref=Genbank:WP_011257145.1;Name=WP_011257145.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374852.1;locus_tag=LLC55_RS00705;product=ABC transporter permease;protein_id=WP_011257145.1;transl_table=11 NZ_CP086200.1 RefSeq gene 137957 139267 . + . ID=gene-LLC55_RS00710;Name=LLC55_RS00710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00710;old_locus_tag=LLC55_00710 NZ_CP086200.1 Protein Homology CDS 137957 139267 . + 0 ID=cds-WP_011257146.1;Parent=gene-LLC55_RS00710;Dbxref=Genbank:WP_011257146.1;Name=WP_011257146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174380.1;locus_tag=LLC55_RS00710;product=ABC transporter permease;protein_id=WP_011257146.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 139280 139942 . - . ID=gene-LLC55_RS00715;Name=LLC55_RS00715;end_range=139942,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00715;old_locus_tag=LLC55_00715;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 139280 139942 . - 0 ID=cds-LLC55_RS00715;Parent=gene-LLC55_RS00715;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=139942,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS00715;partial=true;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 139947 140912 . - . ID=gene-LLC55_RS00720;Name=LLC55_RS00720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00720;old_locus_tag=LLC55_00720;pseudo=true NZ_CP086200.1 Protein Homology CDS 139947 140912 . - 0 ID=cds-LLC55_RS00720;Parent=gene-LLC55_RS00720;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS00720;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 141143 141394 . - . ID=gene-LLC55_RS00725;Name=LLC55_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00725;old_locus_tag=LLC55_00725 NZ_CP086200.1 Protein Homology CDS 141143 141394 . - 0 ID=cds-WP_027703668.1;Parent=gene-LLC55_RS00725;Dbxref=Genbank:WP_027703668.1;Name=WP_027703668.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443655.1;locus_tag=LLC55_RS00725;product=SymE family type I addiction module toxin;protein_id=WP_027703668.1;transl_table=11 NZ_CP086200.1 RefSeq gene 141847 142218 . - . ID=gene-LLC55_RS00730;Name=LLC55_RS00730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00730;old_locus_tag=LLC55_00730 NZ_CP086200.1 Protein Homology CDS 141847 142218 . - 0 ID=cds-WP_011257150.1;Parent=gene-LLC55_RS00730;Dbxref=Genbank:WP_011257150.1;Name=WP_011257150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257150.1;locus_tag=LLC55_RS00730;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_011257150.1;transl_table=11 NZ_CP086200.1 RefSeq gene 142272 142502 . - . ID=gene-LLC55_RS00735;Name=LLC55_RS00735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00735;old_locus_tag=LLC55_00735 NZ_CP086200.1 Protein Homology CDS 142272 142502 . - 0 ID=cds-WP_011407243.1;Parent=gene-LLC55_RS00735;Dbxref=Genbank:WP_011407243.1;Name=WP_011407243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443656.1;locus_tag=LLC55_RS00735;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_011407243.1;transl_table=11 NZ_CP086200.1 RefSeq gene 142569 143231 . - . ID=gene-LLC55_RS00740;Name=LLC55_RS00740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00740;old_locus_tag=LLC55_00740 NZ_CP086200.1 Protein Homology CDS 142569 143231 . - 0 ID=cds-WP_011407244.1;Parent=gene-LLC55_RS00740;Dbxref=Genbank:WP_011407244.1;Name=WP_011407244.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158077.1;locus_tag=LLC55_RS00740;product=hemolysin III family protein;protein_id=WP_011407244.1;transl_table=11 NZ_CP086200.1 RefSeq gene 143409 145904 . + . ID=gene-LLC55_RS00745;Name=LLC55_RS00745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00745;old_locus_tag=LLC55_00745 NZ_CP086200.1 Protein Homology CDS 143409 145904 . + 0 ID=cds-WP_011407245.1;Parent=gene-LLC55_RS00745;Dbxref=Genbank:WP_011407245.1;Name=WP_011407245.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237057.1;locus_tag=LLC55_RS00745;product=DEAD/DEAH box helicase;protein_id=WP_011407245.1;transl_table=11 NZ_CP086200.1 RefSeq gene 145901 147727 . + . ID=gene-LLC55_RS00750;Name=LLC55_RS00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00750;old_locus_tag=LLC55_00750 NZ_CP086200.1 Protein Homology CDS 145901 147727 . + 0 ID=cds-WP_042464339.1;Parent=gene-LLC55_RS00750;Dbxref=Genbank:WP_042464339.1;Name=WP_042464339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501376.1;locus_tag=LLC55_RS00750;product=ribonuclease H-like domain-containing protein;protein_id=WP_042464339.1;transl_table=11 NZ_CP086200.1 RefSeq gene 148216 150360 . - . ID=gene-LLC55_RS00755;Name=avrBs2;gbkey=Gene;gene=avrBs2;gene_biotype=protein_coding;locus_tag=LLC55_RS00755;old_locus_tag=LLC55_00755 NZ_CP086200.1 Protein Homology CDS 148216 150360 . - 0 ID=cds-WP_011407248.1;Parent=gene-LLC55_RS00755;Dbxref=Genbank:WP_011407248.1;Name=WP_011407248.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs2;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964871.1;locus_tag=LLC55_RS00755;product=type III secretion system effector avirulence protein AvrBs2;protein_id=WP_011407248.1;transl_table=11 NZ_CP086200.1 RefSeq gene 150551 151708 . - . ID=gene-LLC55_RS00760;Name=LLC55_RS00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00760;old_locus_tag=LLC55_00760 NZ_CP086200.1 Protein Homology CDS 150551 151708 . - 0 ID=cds-WP_011407249.1;Parent=gene-LLC55_RS00760;Dbxref=Genbank:WP_011407249.1;Name=WP_011407249.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158073.1;locus_tag=LLC55_RS00760;product=ROK family protein;protein_id=WP_011407249.1;transl_table=11 NZ_CP086200.1 RefSeq gene 151812 154469 . + . ID=gene-LLC55_RS00765;Name=LLC55_RS00765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00765;old_locus_tag=LLC55_00765 NZ_CP086200.1 Protein Homology CDS 151812 154469 . + 0 ID=cds-WP_011407250.1;Parent=gene-LLC55_RS00765;Dbxref=Genbank:WP_011407250.1;Name=WP_011407250.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407250.1;locus_tag=LLC55_RS00765;product=TonB-dependent receptor;protein_id=WP_011407250.1;transl_table=11 NZ_CP086200.1 RefSeq gene 154480 155265 . + . ID=gene-LLC55_RS00770;Name=LLC55_RS00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00770;old_locus_tag=LLC55_00770 NZ_CP086200.1 Protein Homology CDS 154480 155265 . + 0 ID=cds-WP_011257157.1;Parent=gene-LLC55_RS00770;Dbxref=Genbank:WP_011257157.1;Name=WP_011257157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158072.1;locus_tag=LLC55_RS00770;product=DUF1868 domain-containing protein;protein_id=WP_011257157.1;transl_table=11 NZ_CP086200.1 RefSeq gene 155579 156769 . - . ID=gene-LLC55_RS00775;Name=LLC55_RS00775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00775;old_locus_tag=LLC55_00775 NZ_CP086200.1 Protein Homology CDS 155579 156769 . - 0 ID=cds-WP_042465397.1;Parent=gene-LLC55_RS00775;Dbxref=Genbank:WP_042465397.1;Name=WP_042465397.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443665.1;locus_tag=LLC55_RS00775;product=saccharopine dehydrogenase NADP-binding domain-containing protein;protein_id=WP_042465397.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 156815 157211 . - . ID=gene-LLC55_RS00780;Name=LLC55_RS00780;end_range=157211,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00780;old_locus_tag=LLC55_00780;partial=true;pseudo=true;start_range=.,156815 NZ_CP086200.1 Protein Homology CDS 156815 157211 . - 0 ID=cds-LLC55_RS00780;Parent=gene-LLC55_RS00780;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=157211,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017170093.1;locus_tag=LLC55_RS00780;partial=true;product=hypothetical protein;pseudo=true;start_range=.,156815;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 157327 157491 . + . ID=gene-LLC55_RS00785;Name=LLC55_RS00785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00785;old_locus_tag=LLC55_00785;partial=true;pseudo=true;start_range=.,157327 NZ_CP086200.1 Protein Homology CDS 157327 157491 . + 0 ID=cds-LLC55_RS00785;Parent=gene-LLC55_RS00785;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572908.1;locus_tag=LLC55_RS00785;partial=true;product=NmrA/HSCARG family protein;pseudo=true;start_range=.,157327;transl_table=11 NZ_CP086200.1 RefSeq gene 157869 158174 . + . ID=gene-LLC55_RS00790;Name=LLC55_RS00790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00790;old_locus_tag=LLC55_00790 NZ_CP086200.1 Protein Homology CDS 157869 158174 . + 0 ID=cds-WP_011407253.1;Parent=gene-LLC55_RS00790;Dbxref=Genbank:WP_011407253.1;Name=WP_011407253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901594.1;locus_tag=LLC55_RS00790;product=hypothetical protein;protein_id=WP_011407253.1;transl_table=11 NZ_CP086200.1 RefSeq gene 158434 159687 . - . ID=gene-LLC55_RS00795;Name=LLC55_RS00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00795;old_locus_tag=LLC55_00795 NZ_CP086200.1 Protein Homology CDS 158434 159687 . - 0 ID=cds-WP_042464345.1;Parent=gene-LLC55_RS00795;Dbxref=Genbank:WP_042464345.1;Name=WP_042464345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171852.1;locus_tag=LLC55_RS00795;product=DNA topoisomerase IB;protein_id=WP_042464345.1;transl_table=11 NZ_CP086200.1 RefSeq gene 159744 160124 . + . ID=gene-LLC55_RS00800;Name=LLC55_RS00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00800;old_locus_tag=LLC55_00800 NZ_CP086200.1 Protein Homology CDS 159744 160124 . + 0 ID=cds-WP_011257161.1;Parent=gene-LLC55_RS00800;Dbxref=Genbank:WP_011257161.1;Name=WP_011257161.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159672.1;locus_tag=LLC55_RS00800;product=I78 family peptidase inhibitor;protein_id=WP_011257161.1;transl_table=11 NZ_CP086200.1 RefSeq gene 160326 164798 . + . ID=gene-LLC55_RS00805;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=LLC55_RS00805;old_locus_tag=LLC55_00805 NZ_CP086200.1 Protein Homology CDS 160326 164798 . + 0 ID=cds-WP_011257162.1;Parent=gene-LLC55_RS00805;Dbxref=Genbank:WP_011257162.1;Name=WP_011257162.1;Ontology_term=GO:0006537,GO:0006807,GO:0003824,GO:0015930,GO:0016491;gbkey=CDS;gene=gltB;go_function=catalytic activity|0003824||IEA,glutamate synthase activity|0015930||IEA,oxidoreductase activity|0016491||IEA;go_process=glutamate biosynthetic process|0006537||IEA,nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237055.1;locus_tag=LLC55_RS00805;product=glutamate synthase large subunit;protein_id=WP_011257162.1;transl_table=11 NZ_CP086200.1 RefSeq gene 164993 166474 . + . ID=gene-LLC55_RS00810;Name=LLC55_RS00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00810;old_locus_tag=LLC55_00810 NZ_CP086200.1 Protein Homology CDS 164993 166474 . + 0 ID=cds-WP_011257163.1;Parent=gene-LLC55_RS00810;Dbxref=Genbank:WP_011257163.1;Name=WP_011257163.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912482.1;locus_tag=LLC55_RS00810;product=FAD-dependent oxidoreductase;protein_id=WP_011257163.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 166717 167091 . + . ID=gene-LLC55_RS00815;Name=LLC55_RS00815;end_range=167091,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00815;old_locus_tag=LLC55_00815;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 166717 167091 . + 0 ID=cds-LLC55_RS00815;Parent=gene-LLC55_RS00815;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=167091,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS00815;partial=true;product=IS4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 167170 167703 . + . ID=gene-LLC55_RS00820;Name=LLC55_RS00820;end_range=167703,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00820;old_locus_tag=LLC55_00820;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 167170 167703 . + 0 ID=cds-LLC55_RS00820;Parent=gene-LLC55_RS00820;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=167703,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS00820;partial=true;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 167712 168677 . - . ID=gene-LLC55_RS00825;Name=LLC55_RS00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00825;old_locus_tag=LLC55_00825 NZ_CP086200.1 Protein Homology CDS 167712 168677 . - 0 ID=cds-WP_109182058.1;Parent=gene-LLC55_RS00825;Dbxref=Genbank:WP_109182058.1;Name=WP_109182058.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS00825;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182058.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 168767 169222 . + . ID=gene-LLC55_RS00830;Name=LLC55_RS00830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00830;old_locus_tag=LLC55_00830;partial=true;pseudo=true;start_range=.,168767 NZ_CP086200.1 Protein Homology CDS 168767 169222 . + 0 ID=cds-LLC55_RS00830;Parent=gene-LLC55_RS00830;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS00830;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,168767;transl_table=11 NZ_CP086200.1 RefSeq gene 169203 170087 . + . ID=gene-LLC55_RS00835;Name=LLC55_RS00835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00835;old_locus_tag=LLC55_00835 NZ_CP086200.1 Protein Homology CDS 169203 170087 . + 0 ID=cds-WP_229001927.1;Parent=gene-LLC55_RS00835;Dbxref=Genbank:WP_229001927.1;Name=WP_229001927.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS00835;product=IS4 family transposase;protein_id=WP_229001927.1;transl_table=11 NZ_CP086200.1 RefSeq gene 170113 170911 . - . ID=gene-LLC55_RS00840;Name=LLC55_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00840;old_locus_tag=LLC55_00840 NZ_CP086200.1 Protein Homology CDS 170640 170911 . - 0 ID=cds-WP_094187801.1;Parent=gene-LLC55_RS00840;Dbxref=Genbank:WP_094187801.1;Name=WP_094187801.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS00840;product=IS5 family transposase;protein_id=WP_094187801.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 170113 170641 . - 1 ID=cds-WP_094187801.1;Parent=gene-LLC55_RS00840;Dbxref=Genbank:WP_094187801.1;Name=WP_094187801.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS00840;product=IS5 family transposase;protein_id=WP_094187801.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 170960 171103 . - . ID=gene-LLC55_RS00845;Name=LLC55_RS00845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00845;old_locus_tag=LLC55_00845;partial=true;pseudo=true;start_range=.,170960 NZ_CP086200.1 Protein Homology CDS 170960 171103 . - 0 ID=cds-LLC55_RS00845;Parent=gene-LLC55_RS00845;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408472.1;locus_tag=LLC55_RS00845;partial=true;product=IS630 family transposase;pseudo=true;start_range=.,170960;transl_table=11 NZ_CP086200.1 RefSeq gene 171150 172532 . - . ID=gene-LLC55_RS00850;Name=LLC55_RS00850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00850;old_locus_tag=LLC55_00850 NZ_CP086200.1 Protein Homology CDS 171150 172532 . - 0 ID=cds-WP_069963815.1;Parent=gene-LLC55_RS00850;Dbxref=Genbank:WP_069963815.1;Name=WP_069963815.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS00850;product=IS5 family transposase;protein_id=WP_069963815.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 172859 173532 . - . ID=gene-LLC55_RS00855;Name=kduI;gbkey=Gene;gene=kduI;gene_biotype=pseudogene;locus_tag=LLC55_RS00855;old_locus_tag=LLC55_00855;partial=true;pseudo=true;start_range=.,172859 NZ_CP086200.1 Protein Homology CDS 172859 173532 . - 0 ID=cds-LLC55_RS00855;Parent=gene-LLC55_RS00855;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0045490,GO:0008697;gbkey=CDS;gene=kduI;go_function=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity|0008697||IEA;go_process=pectin catabolic process|0045490||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991266.1;locus_tag=LLC55_RS00855;partial=true;product=5-dehydro-4-deoxy-D-glucuronate isomerase;pseudo=true;start_range=.,172859;transl_table=11 NZ_CP086200.1 RefSeq gene 173934 174992 . - . ID=gene-LLC55_RS00860;Name=LLC55_RS00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00860;old_locus_tag=LLC55_00860 NZ_CP086200.1 Protein Homology CDS 173934 174992 . - 0 ID=cds-WP_027703863.1;Parent=gene-LLC55_RS00860;Dbxref=Genbank:WP_027703863.1;Name=WP_027703863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158097.1;locus_tag=LLC55_RS00860;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_027703863.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 175136 175674 . - . ID=gene-LLC55_RS00865;Name=LLC55_RS00865;end_range=175674,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00865;old_locus_tag=LLC55_00865;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 175136 175674 . - 0 ID=cds-LLC55_RS00865;Parent=gene-LLC55_RS00865;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=175674,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345889.1;locus_tag=LLC55_RS00865;partial=true;product=xylosidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 175673 175804 . + . ID=gene-LLC55_RS00870;Name=LLC55_RS00870;end_range=175804,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00870;old_locus_tag=LLC55_00870;partial=true;pseudo=true;start_range=.,175673 NZ_CP086200.1 Protein Homology CDS 175673 175804 . + 0 ID=cds-LLC55_RS00870;Parent=gene-LLC55_RS00870;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=175804,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912119.1;locus_tag=LLC55_RS00870;partial=true;product=carboxylesterase family protein;pseudo=true;start_range=.,175673;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 175911 176353 . - . ID=gene-LLC55_RS00875;Name=LLC55_RS00875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00875;old_locus_tag=LLC55_00875;pseudo=true NZ_CP086200.1 Protein Homology CDS 175911 176353 . - 0 ID=cds-LLC55_RS00875;Parent=gene-LLC55_RS00875;Note=frameshifted;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024258.2;locus_tag=LLC55_RS00875;product=metallophosphoesterase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 176557 178740 . - . ID=gene-LLC55_RS00880;Name=glgB;gbkey=Gene;gene=glgB;gene_biotype=protein_coding;locus_tag=LLC55_RS00880;old_locus_tag=LLC55_00880 NZ_CP086200.1 Protein Homology CDS 176557 178740 . - 0 ID=cds-WP_042464354.1;Parent=gene-LLC55_RS00880;Dbxref=Genbank:WP_042464354.1;Name=WP_042464354.1;Ontology_term=GO:0005975,GO:0005978,GO:0003844,GO:0004553,GO:0043169;gbkey=CDS;gene=glgB;go_function=1%2C4-alpha-glucan branching enzyme activity|0003844||IEA,hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,cation binding|0043169||IEA;go_process=carbohydrate metabolic process|0005975||IEA,glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302960.1;locus_tag=LLC55_RS00880;product=1%2C4-alpha-glucan branching protein GlgB;protein_id=WP_042464354.1;transl_table=11 NZ_CP086200.1 RefSeq gene 178752 182102 . - . ID=gene-LLC55_RS00885;Name=treS;gbkey=Gene;gene=treS;gene_biotype=protein_coding;locus_tag=LLC55_RS00885;old_locus_tag=LLC55_00885 NZ_CP086200.1 Protein Homology CDS 178752 182102 . - 0 ID=cds-WP_011407267.1;Parent=gene-LLC55_RS00885;Dbxref=Genbank:WP_011407267.1;Name=WP_011407267.1;Ontology_term=GO:0005991,GO:0047471;gbkey=CDS;gene=treS;go_function=maltose alpha-D-glucosyltransferase activity|0047471||IEA;go_process=trehalose metabolic process|0005991||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501461.1;locus_tag=LLC55_RS00885;product=maltose alpha-D-glucosyltransferase;protein_id=WP_011407267.1;transl_table=11 NZ_CP086200.1 RefSeq gene 182099 185215 . - . ID=gene-LLC55_RS00890;Name=LLC55_RS00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00890;old_locus_tag=LLC55_00890 NZ_CP086200.1 Protein Homology CDS 182099 185215 . - 0 ID=cds-WP_011407268.1;Parent=gene-LLC55_RS00890;Dbxref=Genbank:WP_011407268.1;Name=WP_011407268.1;Ontology_term=GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574465.1;locus_tag=LLC55_RS00890;product=DUF3416 domain-containing protein;protein_id=WP_011407268.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 185975 186802 . - . ID=gene-LLC55_RS00895;Name=LLC55_RS00895;end_range=186802,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00895;old_locus_tag=LLC55_00895;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 185975 186802 . - 0 ID=cds-LLC55_RS00895;Parent=gene-LLC55_RS00895;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=186802,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612183.1;locus_tag=LLC55_RS00895;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 186891 187079 . + . ID=gene-LLC55_RS00900;Name=LLC55_RS00900;end_range=187079,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00900;old_locus_tag=LLC55_00900;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 186891 187079 . + 0 ID=cds-LLC55_RS00900;Parent=gene-LLC55_RS00900;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=187079,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS00900;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 187168 188134 . + . ID=gene-LLC55_RS00905;Name=LLC55_RS00905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00905;old_locus_tag=LLC55_00905;pseudo=true NZ_CP086200.1 Protein Homology CDS 187168 188134 . + 0 ID=cds-LLC55_RS00905;Parent=gene-LLC55_RS00905;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS00905;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 188141 189142 . + . ID=gene-LLC55_RS00910;Name=LLC55_RS00910;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00910;old_locus_tag=LLC55_00910;partial=true;pseudo=true;start_range=.,188141 NZ_CP086200.1 Protein Homology CDS 188141 189142 . + 0 ID=cds-LLC55_RS00910;Parent=gene-LLC55_RS00910;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS00910;partial=true;product=IS256-like element IS1113 family transposase;pseudo=true;start_range=.,188141;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 189172 189621 . - . ID=gene-LLC55_RS00915;Name=LLC55_RS00915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00915;old_locus_tag=LLC55_00915;partial=true;pseudo=true;start_range=.,189172 NZ_CP086200.1 Protein Homology CDS 189172 189621 . - 0 ID=cds-LLC55_RS00915;Parent=gene-LLC55_RS00915;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_043745823.1;locus_tag=LLC55_RS00915;partial=true;product=IS1595-like element ISXo5 family transposase;pseudo=true;start_range=.,189172;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 189710 190750 . + . ID=gene-LLC55_RS00920;Name=LLC55_RS00920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00920;old_locus_tag=LLC55_00920;partial=true;pseudo=true;start_range=.,189710 NZ_CP086200.1 Protein Homology CDS 189710 190750 . + 0 ID=cds-LLC55_RS00920;Parent=gene-LLC55_RS00920;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS00920;partial=true;product=IS5-like element ISXoo5 family transposase;pseudo=true;start_range=.,189710;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 190889 192265 . + . ID=gene-LLC55_RS00925;Name=LLC55_RS00925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00925;old_locus_tag=LLC55_00925;pseudo=true NZ_CP086200.1 Protein Homology CDS 190889 192265 . + 0 ID=cds-LLC55_RS00925;Parent=gene-LLC55_RS00925;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS00925;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 192360 193679 . + . ID=gene-LLC55_RS00930;Name=LLC55_RS00930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00930;old_locus_tag=LLC55_00930 NZ_CP086200.1 Protein Homology CDS 192360 193679 . + 0 ID=cds-WP_011407278.1;Parent=gene-LLC55_RS00930;Dbxref=Genbank:WP_011407278.1;Name=WP_011407278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS00930;product=IS701-like element ISXo15 family transposase;protein_id=WP_011407278.1;transl_table=11 NZ_CP086200.1 RefSeq gene 193836 195356 . - . ID=gene-LLC55_RS00935;Name=LLC55_RS00935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00935;old_locus_tag=LLC55_00935 NZ_CP086200.1 Protein Homology CDS 193836 195356 . - 0 ID=cds-WP_011257184.1;Parent=gene-LLC55_RS00935;Dbxref=Genbank:WP_011257184.1;Name=WP_011257184.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989245.1;locus_tag=LLC55_RS00935;product=YifB family Mg chelatase-like AAA ATPase;protein_id=WP_011257184.1;transl_table=11 NZ_CP086200.1 RefSeq gene 195373 195651 . - . ID=gene-LLC55_RS00940;Name=LLC55_RS00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00940;old_locus_tag=LLC55_00940 NZ_CP086200.1 Protein Homology CDS 195373 195651 . - 0 ID=cds-WP_011257185.1;Parent=gene-LLC55_RS00940;Dbxref=Genbank:WP_011257185.1;Name=WP_011257185.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156738.1;locus_tag=LLC55_RS00940;product=accessory factor UbiK family protein;protein_id=WP_011257185.1;transl_table=11 NZ_CP086200.1 RefSeq gene 195841 196179 . + . ID=gene-LLC55_RS00945;Name=LLC55_RS00945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00945;old_locus_tag=LLC55_00945 NZ_CP086200.1 Protein Homology CDS 195841 196179 . + 0 ID=cds-WP_011257186.1;Parent=gene-LLC55_RS00945;Dbxref=Genbank:WP_011257186.1;Name=WP_011257186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010880011.1;locus_tag=LLC55_RS00945;product=P-II family nitrogen regulator;protein_id=WP_011257186.1;transl_table=11 NZ_CP086200.1 RefSeq gene 196792 198777 . + . ID=gene-LLC55_RS00950;Name=LLC55_RS00950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00950;old_locus_tag=LLC55_00950 NZ_CP086200.1 Protein Homology CDS 196792 198777 . + 0 ID=cds-WP_011407279.1;Parent=gene-LLC55_RS00950;Dbxref=Genbank:WP_011407279.1;Name=WP_011407279.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471473.1;locus_tag=LLC55_RS00950;product=beta-N-acetylglucosaminidase domain-containing protein;protein_id=WP_011407279.1;transl_table=11 NZ_CP086200.1 RefSeq gene 198834 198910 . - . ID=gene-LLC55_RS00955;Name=LLC55_RS00955;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS00955;old_locus_tag=LLC55_00955 NZ_CP086200.1 cmsearch ncRNA 198834 198910 . - . ID=rna-LLC55_RS00955;Parent=gene-LLC55_RS00955;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00955;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 198834 198910 . - . ID=exon-LLC55_RS00955-1;Parent=rna-LLC55_RS00955;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS00955;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 198903 199139 . - . ID=gene-LLC55_RS00960;Name=LLC55_RS00960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS00960;old_locus_tag=LLC55_00960;partial=true;pseudo=true;start_range=.,198903 NZ_CP086200.1 Protein Homology CDS 198903 199139 . - 0 ID=cds-LLC55_RS00960;Parent=gene-LLC55_RS00960;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156740.1;locus_tag=LLC55_RS00960;partial=true;product=hypothetical protein;pseudo=true;start_range=.,198903;transl_table=11 NZ_CP086200.1 RefSeq gene 199697 200509 . + . ID=gene-LLC55_RS00965;Name=LLC55_RS00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00965;old_locus_tag=LLC55_00965 NZ_CP086200.1 Protein Homology CDS 199697 200509 . + 0 ID=cds-WP_075242268.1;Parent=gene-LLC55_RS00965;Dbxref=Genbank:WP_075242268.1;Name=WP_075242268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171970.1;locus_tag=LLC55_RS00965;product=outer membrane beta-barrel protein;protein_id=WP_075242268.1;transl_table=11 NZ_CP086200.1 RefSeq gene 200702 201313 . + . ID=gene-LLC55_RS00970;Name=LLC55_RS00970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00970;old_locus_tag=LLC55_00970 NZ_CP086200.1 Protein Homology CDS 200702 201313 . + 0 ID=cds-WP_011257189.1;Parent=gene-LLC55_RS00970;Dbxref=Genbank:WP_011257189.1;Name=WP_011257189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305069.1;locus_tag=LLC55_RS00970;product=PH domain-containing protein;protein_id=WP_011257189.1;transl_table=11 NZ_CP086200.1 RefSeq gene 201730 202587 . - . ID=gene-LLC55_RS00975;Name=speE;gbkey=Gene;gene=speE;gene_biotype=protein_coding;locus_tag=LLC55_RS00975;old_locus_tag=LLC55_00975 NZ_CP086200.1 Protein Homology CDS 201730 202587 . - 0 ID=cds-WP_011257190.1;Parent=gene-LLC55_RS00975;Dbxref=Genbank:WP_011257190.1;Name=WP_011257190.1;gbkey=CDS;gene=speE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305070.1;locus_tag=LLC55_RS00975;product=polyamine aminopropyltransferase;protein_id=WP_011257190.1;transl_table=11 NZ_CP086200.1 RefSeq gene 202825 204711 . + . ID=gene-LLC55_RS00980;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=LLC55_RS00980;old_locus_tag=LLC55_00980 NZ_CP086200.1 Protein Homology CDS 202825 204711 . + 0 ID=cds-WP_011257191.1;Parent=gene-LLC55_RS00980;Dbxref=Genbank:WP_011257191.1;Name=WP_011257191.1;Ontology_term=GO:0008295,GO:0008792;gbkey=CDS;gene=speA;go_function=arginine decarboxylase activity|0008792||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038943.1;locus_tag=LLC55_RS00980;product=arginine decarboxylase;protein_id=WP_011257191.1;transl_table=11 NZ_CP086200.1 RefSeq gene 205284 206660 . + . ID=gene-LLC55_RS00985;Name=LLC55_RS00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00985;old_locus_tag=LLC55_00985 NZ_CP086200.1 Protein Homology CDS 205284 206660 . + 0 ID=cds-WP_069963816.1;Parent=gene-LLC55_RS00985;Dbxref=Genbank:WP_069963816.1;Name=WP_069963816.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS00985;product=IS5-like element ISXoo4 family transposase;protein_id=WP_069963816.1;transl_table=11 NZ_CP086200.1 RefSeq gene 207065 209788 . + . ID=gene-LLC55_RS00990;Name=LLC55_RS00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00990;old_locus_tag=LLC55_00990 NZ_CP086200.1 Protein Homology CDS 207065 209788 . + 0 ID=cds-WP_011257193.1;Parent=gene-LLC55_RS00990;Dbxref=Genbank:WP_011257193.1;Name=WP_011257193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257894.1;locus_tag=LLC55_RS00990;product=type VI secretion system Vgr family protein;protein_id=WP_011257193.1;transl_table=11 NZ_CP086200.1 RefSeq gene 209856 212009 . + . ID=gene-LLC55_RS00995;Name=LLC55_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS00995;old_locus_tag=LLC55_00995 NZ_CP086200.1 Protein Homology CDS 209856 212009 . + 0 ID=cds-WP_041182356.1;Parent=gene-LLC55_RS00995;Dbxref=Genbank:WP_041182356.1;Name=WP_041182356.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407286.1;locus_tag=LLC55_RS00995;product=DUF3274 domain-containing protein;protein_id=WP_041182356.1;transl_table=11 NZ_CP086200.1 RefSeq gene 212006 213697 . + . ID=gene-LLC55_RS01000;Name=LLC55_RS01000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01000;old_locus_tag=LLC55_01000 NZ_CP086200.1 Protein Homology CDS 212006 213697 . + 0 ID=cds-WP_011257195.1;Parent=gene-LLC55_RS01000;Dbxref=Genbank:WP_011257195.1;Name=WP_011257195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257195.1;locus_tag=LLC55_RS01000;product=DUF2875 family protein;protein_id=WP_011257195.1;transl_table=11 NZ_CP086200.1 RefSeq gene 213694 213957 . + . ID=gene-LLC55_RS01005;Name=LLC55_RS01005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01005;old_locus_tag=LLC55_01005 NZ_CP086200.1 Protein Homology CDS 213694 213957 . + 0 ID=cds-WP_041181914.1;Parent=gene-LLC55_RS01005;Dbxref=Genbank:WP_041181914.1;Name=WP_041181914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303179.1;locus_tag=LLC55_RS01005;product=PAAR domain-containing protein;protein_id=WP_041181914.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 214019 216220 . + . ID=gene-LLC55_RS01010;Name=LLC55_RS01010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01010;old_locus_tag=LLC55_01010;pseudo=true NZ_CP086200.1 Protein Homology CDS 214019 216220 . + 0 ID=cds-LLC55_RS01010;Parent=gene-LLC55_RS01010;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257196.1;locus_tag=LLC55_RS01010;product=DUF3274 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 216217 217905 . + . ID=gene-LLC55_RS01015;Name=LLC55_RS01015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01015;old_locus_tag=LLC55_01015 NZ_CP086200.1 Protein Homology CDS 216217 217905 . + 0 ID=cds-WP_011257197.1;Parent=gene-LLC55_RS01015;Dbxref=Genbank:WP_011257197.1;Name=WP_011257197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257197.1;locus_tag=LLC55_RS01015;product=DUF2875 family protein;protein_id=WP_011257197.1;transl_table=11 NZ_CP086200.1 RefSeq gene 217902 218048 . + . ID=gene-LLC55_RS01020;Name=LLC55_RS01020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01020;old_locus_tag=LLC55_01020 NZ_CP086200.1 Protein Homology CDS 217902 218048 . + 0 ID=cds-WP_012443701.1;Parent=gene-LLC55_RS01020;Dbxref=Genbank:WP_012443701.1;Name=WP_012443701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504125.1;locus_tag=LLC55_RS01020;product=membrane protein;protein_id=WP_012443701.1;transl_table=11 NZ_CP086200.1 RefSeq gene 218038 218319 . + . ID=gene-LLC55_RS01025;Name=LLC55_RS01025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01025;old_locus_tag=LLC55_01025 NZ_CP086200.1 Protein Homology CDS 218038 218319 . + 0 ID=cds-WP_229001926.1;Parent=gene-LLC55_RS01025;Dbxref=Genbank:WP_229001926.1;Name=WP_229001926.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017315.2;locus_tag=LLC55_RS01025;product=hypothetical protein;protein_id=WP_229001926.1;transl_table=11 NZ_CP086200.1 RefSeq gene 218439 220343 . - . ID=gene-LLC55_RS01030;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=LLC55_RS01030;old_locus_tag=LLC55_01030 NZ_CP086200.1 Protein Homology CDS 218439 220343 . - 0 ID=cds-WP_012443704.1;Parent=gene-LLC55_RS01030;Dbxref=Genbank:WP_012443704.1;Name=WP_012443704.1;Ontology_term=GO:0002098,GO:0008033,GO:0050660;gbkey=CDS;gene=mnmG;go_function=flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437137.1;locus_tag=LLC55_RS01030;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=WP_012443704.1;transl_table=11 NZ_CP086200.1 RefSeq gene 220604 220783 . - . ID=gene-LLC55_RS01035;Name=LLC55_RS01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01035;old_locus_tag=LLC55_01035 NZ_CP086200.1 Protein Homology CDS 220604 220783 . - 0 ID=cds-WP_075239321.1;Parent=gene-LLC55_RS01035;Dbxref=Genbank:WP_075239321.1;Name=WP_075239321.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485698.1;locus_tag=LLC55_RS01035;product=hypothetical protein;protein_id=WP_075239321.1;transl_table=11 NZ_CP086200.1 RefSeq gene 220917 221384 . - . ID=gene-LLC55_RS01040;Name=LLC55_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01040;old_locus_tag=LLC55_01040 NZ_CP086200.1 Protein Homology CDS 220917 221384 . - 0 ID=cds-WP_044756221.1;Parent=gene-LLC55_RS01040;Dbxref=Genbank:WP_044756221.1;Name=WP_044756221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171656.1;locus_tag=LLC55_RS01040;product=hypothetical protein;protein_id=WP_044756221.1;transl_table=11 NZ_CP086200.1 RefSeq gene 221542 222501 . + . ID=gene-LLC55_RS01045;Name=LLC55_RS01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01045;old_locus_tag=LLC55_01045 NZ_CP086200.1 Protein Homology CDS 221542 222501 . + 0 ID=cds-WP_011257199.1;Parent=gene-LLC55_RS01045;Dbxref=Genbank:WP_011257199.1;Name=WP_011257199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920032.1;locus_tag=LLC55_RS01045;product=pyridoxal-phosphate dependent enzyme;protein_id=WP_011257199.1;transl_table=11 NZ_CP086200.1 RefSeq gene 222486 223103 . + . ID=gene-LLC55_RS01050;Name=LLC55_RS01050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01050;old_locus_tag=LLC55_01050 NZ_CP086200.1 Protein Homology CDS 222486 223103 . + 0 ID=cds-WP_044756223.1;Parent=gene-LLC55_RS01050;Dbxref=Genbank:WP_044756223.1;Name=WP_044756223.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912742.1;locus_tag=LLC55_RS01050;product=YdcF family protein;protein_id=WP_044756223.1;transl_table=11 NZ_CP086200.1 RefSeq gene 223146 223565 . + . ID=gene-LLC55_RS01055;Name=LLC55_RS01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01055;old_locus_tag=LLC55_01055 NZ_CP086200.1 Protein Homology CDS 223146 223565 . + 0 ID=cds-WP_011257200.1;Parent=gene-LLC55_RS01055;Dbxref=Genbank:WP_011257200.1;Name=WP_011257200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903249.1;locus_tag=LLC55_RS01055;product=nuclear transport factor 2 family protein;protein_id=WP_011257200.1;transl_table=11 NZ_CP086200.1 RefSeq gene 223818 224723 . - . ID=gene-LLC55_RS01060;Name=lpxO;gbkey=Gene;gene=lpxO;gene_biotype=protein_coding;locus_tag=LLC55_RS01060;old_locus_tag=LLC55_01060 NZ_CP086200.1 Protein Homology CDS 223818 224723 . - 0 ID=cds-WP_012443706.1;Parent=gene-LLC55_RS01060;Dbxref=Genbank:WP_012443706.1;Name=WP_012443706.1;Ontology_term=GO:0018193;gbkey=CDS;gene=lpxO;go_process=peptidyl-amino acid modification|0018193||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443706.1;locus_tag=LLC55_RS01060;product=lipid A hydroxylase LpxO;protein_id=WP_012443706.1;transl_table=11 NZ_CP086200.1 RefSeq gene 224972 225856 . - . ID=gene-LLC55_RS01065;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=LLC55_RS01065;old_locus_tag=LLC55_01065 NZ_CP086200.1 Protein Homology CDS 224972 225856 . - 0 ID=cds-WP_011257202.1;Parent=gene-LLC55_RS01065;Dbxref=Genbank:WP_011257202.1;Name=WP_011257202.1;Ontology_term=GO:0009102,GO:0008171;gbkey=CDS;gene=bioC;go_function=O-methyltransferase activity|0008171||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485708.1;locus_tag=LLC55_RS01065;product=malonyl-ACP O-methyltransferase BioC;protein_id=WP_011257202.1;transl_table=11 NZ_CP086200.1 RefSeq gene 225920 226702 . - . ID=gene-LLC55_RS01070;Name=LLC55_RS01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01070;old_locus_tag=LLC55_01070 NZ_CP086200.1 Protein Homology CDS 225920 226702 . - 0 ID=cds-WP_011257203.1;Parent=gene-LLC55_RS01070;Dbxref=Genbank:WP_011257203.1;Name=WP_011257203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509285.1;locus_tag=LLC55_RS01070;product=SDR family oxidoreductase;protein_id=WP_011257203.1;transl_table=11 NZ_CP086200.1 RefSeq gene 226747 227508 . - . ID=gene-LLC55_RS01075;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=LLC55_RS01075;old_locus_tag=LLC55_01075 NZ_CP086200.1 Protein Homology CDS 226747 227508 . - 0 ID=cds-WP_011407292.1;Parent=gene-LLC55_RS01075;Dbxref=Genbank:WP_011407292.1;Name=WP_011407292.1;Ontology_term=GO:0009102,GO:0003824;gbkey=CDS;gene=bioH;go_function=catalytic activity|0003824||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968482.1;locus_tag=LLC55_RS01075;product=pimeloyl-ACP methyl ester esterase BioH;protein_id=WP_011407292.1;transl_table=11 NZ_CP086200.1 RefSeq gene 227672 228049 . - . ID=gene-LLC55_RS01080;Name=LLC55_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01080;old_locus_tag=LLC55_01080 NZ_CP086200.1 Protein Homology CDS 227672 228049 . - 0 ID=cds-WP_027703523.1;Parent=gene-LLC55_RS01080;Dbxref=Genbank:WP_027703523.1;Name=WP_027703523.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912732.1;locus_tag=LLC55_RS01080;product=hypothetical protein;protein_id=WP_027703523.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 228043 228243 . + . ID=gene-LLC55_RS01085;Name=LLC55_RS01085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01085;old_locus_tag=LLC55_01085;partial=true;pseudo=true;start_range=.,228043 NZ_CP086200.1 Protein Homology CDS 228043 228243 . + 0 ID=cds-LLC55_RS01085;Parent=gene-LLC55_RS01085;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612184.1;locus_tag=LLC55_RS01085;partial=true;product=transposase;pseudo=true;start_range=.,228043;transl_table=11 NZ_CP086200.1 RefSeq gene 228320 229411 . + . ID=gene-LLC55_RS01090;Name=LLC55_RS01090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01090;old_locus_tag=LLC55_01090 NZ_CP086200.1 Protein Homology CDS 228320 229411 . + 0 ID=cds-WP_011407293.1;Parent=gene-LLC55_RS01090;Dbxref=Genbank:WP_011407293.1;Name=WP_011407293.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112451.1;locus_tag=LLC55_RS01090;product=DUF4380 domain-containing protein;protein_id=WP_011407293.1;transl_table=11 NZ_CP086200.1 RefSeq gene 229480 231078 . + . ID=gene-LLC55_RS01095;Name=LLC55_RS01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01095;old_locus_tag=LLC55_01095 NZ_CP086200.1 Protein Homology CDS 229480 231078 . + 0 ID=cds-WP_075242275.1;Parent=gene-LLC55_RS01095;Dbxref=Genbank:WP_075242275.1;Name=WP_075242275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407294.1;locus_tag=LLC55_RS01095;product=glucan biosynthesis protein D;protein_id=WP_075242275.1;transl_table=11 NZ_CP086200.1 RefSeq gene 231243 232487 . - . ID=gene-LLC55_RS01100;Name=LLC55_RS01100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01100;old_locus_tag=LLC55_01100 NZ_CP086200.1 Protein Homology CDS 231243 232487 . - 0 ID=cds-WP_011407295.1;Parent=gene-LLC55_RS01100;Dbxref=Genbank:WP_011407295.1;Name=WP_011407295.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155166.1;locus_tag=LLC55_RS01100;product=GAF domain-containing protein;protein_id=WP_011407295.1;transl_table=11 NZ_CP086200.1 RefSeq gene 232939 233568 . - . ID=gene-LLC55_RS01105;Name=LLC55_RS01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01105;old_locus_tag=LLC55_01105 NZ_CP086200.1 Protein Homology CDS 232939 233568 . - 0 ID=cds-WP_011257210.1;Parent=gene-LLC55_RS01105;Dbxref=Genbank:WP_011257210.1;Name=WP_011257210.1;Ontology_term=GO:0004797,GO:0005524;gbkey=CDS;go_function=thymidine kinase activity|0004797||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374599.1;locus_tag=LLC55_RS01105;product=thymidine kinase;protein_id=WP_011257210.1;transl_table=11 NZ_CP086200.1 RefSeq gene 233775 235751 . + . ID=gene-LLC55_RS01110;Name=LLC55_RS01110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01110;old_locus_tag=LLC55_01110 NZ_CP086200.1 Protein Homology CDS 233775 235751 . + 0 ID=cds-WP_011257211.1;Parent=gene-LLC55_RS01110;Dbxref=Genbank:WP_011257211.1;Name=WP_011257211.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091509.1;locus_tag=LLC55_RS01110;product=UvrD-helicase domain-containing protein;protein_id=WP_011257211.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 235829 236130 . + . ID=gene-LLC55_RS01115;Name=LLC55_RS01115;end_range=236130,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01115;old_locus_tag=LLC55_01115;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 235829 236130 . + 0 ID=cds-LLC55_RS01115;Parent=gene-LLC55_RS01115;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=236130,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374593.1;locus_tag=LLC55_RS01115;partial=true;product=GNAT family N-acetyltransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 236251 236835 . + . ID=gene-LLC55_RS01120;Name=LLC55_RS01120;end_range=236835,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01120;old_locus_tag=LLC55_01120;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 236251 236835 . + 0 ID=cds-LLC55_RS01120;Parent=gene-LLC55_RS01120;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=236835,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155171.1;locus_tag=LLC55_RS01120;partial=true;product=DUF4272 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 237138 237803 . - . ID=gene-LLC55_RS01125;Name=LLC55_RS01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01125;old_locus_tag=LLC55_01125 NZ_CP086200.1 Protein Homology CDS 237138 237803 . - 0 ID=cds-WP_011407298.1;Parent=gene-LLC55_RS01125;Dbxref=Genbank:WP_011407298.1;Name=WP_011407298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374589.1;locus_tag=LLC55_RS01125;product=YceH family protein;protein_id=WP_011407298.1;transl_table=11 NZ_CP086200.1 RefSeq gene 238141 239100 . + . ID=gene-LLC55_RS01130;Name=LLC55_RS01130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01130;old_locus_tag=LLC55_01130 NZ_CP086200.1 Protein Homology CDS 238141 239100 . + 0 ID=cds-WP_205412093.1;Parent=gene-LLC55_RS01130;Dbxref=Genbank:WP_205412093.1;Name=WP_205412093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159717.1;locus_tag=LLC55_RS01130;product=5'-nucleotidase%2C lipoprotein e(P4) family;protein_id=WP_205412093.1;transl_table=11 NZ_CP086200.1 RefSeq gene 239097 239828 . + . ID=gene-LLC55_RS01135;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=LLC55_RS01135;old_locus_tag=LLC55_01135 NZ_CP086200.1 Protein Homology CDS 239097 239828 . + 0 ID=cds-WP_011257215.1;Parent=gene-LLC55_RS01135;Dbxref=Genbank:WP_011257215.1;Name=WP_011257215.1;Ontology_term=GO:0006207,GO:0044205,GO:0004590;gbkey=CDS;gene=pyrF;go_function=orotidine-5'-phosphate decarboxylase activity|0004590||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,'de novo' UMP biosynthetic process|0044205||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505335.1;locus_tag=LLC55_RS01135;product=orotidine-5'-phosphate decarboxylase;protein_id=WP_011257215.1;transl_table=11 NZ_CP086200.1 RefSeq gene 240182 241711 . - . ID=gene-LLC55_RS01140;Name=LLC55_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01140;old_locus_tag=LLC55_01140 NZ_CP086200.1 Protein Homology CDS 240182 241711 . - 0 ID=cds-WP_011257216.1;Parent=gene-LLC55_RS01140;Dbxref=Genbank:WP_011257216.1;Name=WP_011257216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443718.1;locus_tag=LLC55_RS01140;product=tryptophan 7-halogenase;protein_id=WP_011257216.1;transl_table=11 NZ_CP086200.1 RefSeq gene 241821 244853 . - . ID=gene-LLC55_RS01145;Name=LLC55_RS01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01145;old_locus_tag=LLC55_01145 NZ_CP086200.1 Protein Homology CDS 241821 244853 . - 0 ID=cds-WP_011407300.1;Parent=gene-LLC55_RS01145;Dbxref=Genbank:WP_011407300.1;Name=WP_011407300.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171731.1;locus_tag=LLC55_RS01145;product=TonB-dependent receptor;protein_id=WP_011407300.1;transl_table=11 NZ_CP086200.1 RefSeq gene 245152 248190 . - . ID=gene-LLC55_RS01150;Name=LLC55_RS01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01150;old_locus_tag=LLC55_01150 NZ_CP086200.1 Protein Homology CDS 245152 248190 . - 0 ID=cds-WP_011257218.1;Parent=gene-LLC55_RS01150;Dbxref=Genbank:WP_011257218.1;Name=WP_011257218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171975.1;locus_tag=LLC55_RS01150;product=TonB-dependent receptor;protein_id=WP_011257218.1;transl_table=11 NZ_CP086200.1 RefSeq gene 248355 249407 . - . ID=gene-LLC55_RS01155;Name=LLC55_RS01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01155;old_locus_tag=LLC55_01155 NZ_CP086200.1 Protein Homology CDS 248355 249407 . - 0 ID=cds-WP_011257219.1;Parent=gene-LLC55_RS01155;Dbxref=Genbank:WP_011257219.1;Name=WP_011257219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505331.1;locus_tag=LLC55_RS01155;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_011257219.1;transl_table=11 NZ_CP086200.1 RefSeq gene 249576 249821 . - . ID=gene-LLC55_RS01160;Name=LLC55_RS01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01160;old_locus_tag=LLC55_01160 NZ_CP086200.1 GeneMarkS-2+ CDS 249576 249821 . - 0 ID=cds-WP_075240491.1;Parent=gene-LLC55_RS01160;Dbxref=Genbank:WP_075240491.1;Name=WP_075240491.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS01160;product=hypothetical protein;protein_id=WP_075240491.1;transl_table=11 NZ_CP086200.1 RefSeq gene 249820 250785 . + . ID=gene-LLC55_RS01165;Name=LLC55_RS01165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01165;old_locus_tag=LLC55_01165 NZ_CP086200.1 Protein Homology CDS 249820 250785 . + 0 ID=cds-WP_011407301.1;Parent=gene-LLC55_RS01165;Dbxref=Genbank:WP_011407301.1;Name=WP_011407301.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377011.1;locus_tag=LLC55_RS01165;product=hypothetical protein;protein_id=WP_011407301.1;transl_table=11 NZ_CP086200.1 RefSeq gene 250785 253445 . + . ID=gene-LLC55_RS01170;Name=plsB;gbkey=Gene;gene=plsB;gene_biotype=protein_coding;locus_tag=LLC55_RS01170;old_locus_tag=LLC55_01170 NZ_CP086200.1 Protein Homology CDS 250785 253445 . + 0 ID=cds-WP_011257221.1;Parent=gene-LLC55_RS01170;Dbxref=Genbank:WP_011257221.1;Name=WP_011257221.1;Ontology_term=GO:0008654,GO:0004366;gbkey=CDS;gene=plsB;go_function=glycerol-3-phosphate O-acyltransferase activity|0004366||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257221.1;locus_tag=LLC55_RS01170;product=glycerol-3-phosphate 1-O-acyltransferase PlsB;protein_id=WP_011257221.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 253645 254625 . + . ID=gene-LLC55_RS01175;Name=LLC55_RS01175;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01175;old_locus_tag=LLC55_01175;pseudo=true NZ_CP086200.1 Protein Homology CDS 253645 254625 . + 0 ID=cds-LLC55_RS01175;Parent=gene-LLC55_RS01175;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932469.1;locus_tag=LLC55_RS01175;product=zinc-binding dehydrogenase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 255264 255467 . - . ID=gene-LLC55_RS01180;Name=LLC55_RS01180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01180;old_locus_tag=LLC55_01180 NZ_CP086200.1 Protein Homology CDS 255264 255467 . - 0 ID=cds-WP_008573820.1;Parent=gene-LLC55_RS01180;Dbxref=Genbank:WP_008573820.1;Name=WP_008573820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573820.1;locus_tag=LLC55_RS01180;product=YdcH family protein;protein_id=WP_008573820.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 255620 255934 . + . ID=gene-LLC55_RS01185;Name=LLC55_RS01185;end_range=255934,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01185;old_locus_tag=LLC55_01185;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 255620 255934 . + 0 ID=cds-LLC55_RS01185;Parent=gene-LLC55_RS01185;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=255934,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573822.1;locus_tag=LLC55_RS01185;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 256061 257103 . + . ID=gene-LLC55_RS01190;Name=LLC55_RS01190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01190;old_locus_tag=LLC55_01190;pseudo=true NZ_CP086200.1 Protein Homology CDS 256061 257103 . + 0 ID=cds-LLC55_RS01190;Parent=gene-LLC55_RS01190;Note=programmed frameshift%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS01190;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 257137 257679 . + . ID=gene-LLC55_RS01195;Name=LLC55_RS01195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01195;old_locus_tag=LLC55_01195;partial=true;pseudo=true;start_range=.,257137 NZ_CP086200.1 Protein Homology CDS 257137 257679 . + 0 ID=cds-LLC55_RS01195;Parent=gene-LLC55_RS01195;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012436974.1;locus_tag=LLC55_RS01195;partial=true;product=RpiB/LacA/LacB family sugar-phosphate isomerase;pseudo=true;start_range=.,257137;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 258045 258888 . + . ID=gene-LLC55_RS01200;Name=LLC55_RS01200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01200;old_locus_tag=LLC55_01200;pseudo=true NZ_CP086200.1 Protein Homology CDS 258045 258888 . + 0 ID=cds-LLC55_RS01200;Parent=gene-LLC55_RS01200;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345892.1;locus_tag=LLC55_RS01200;product=GDSL-type esterase/lipase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 259110 259754 . - . ID=gene-LLC55_RS01205;Name=LLC55_RS01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01205;old_locus_tag=LLC55_01205 NZ_CP086200.1 Protein Homology CDS 259110 259754 . - 0 ID=cds-WP_011257226.1;Parent=gene-LLC55_RS01205;Dbxref=Genbank:WP_011257226.1;Name=WP_011257226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490472.1;locus_tag=LLC55_RS01205;product=DUF4375 domain-containing protein;protein_id=WP_011257226.1;transl_table=11 NZ_CP086200.1 RefSeq gene 259895 260785 . - . ID=gene-LLC55_RS01210;Name=phhA;gbkey=Gene;gene=phhA;gene_biotype=protein_coding;locus_tag=LLC55_RS01210;old_locus_tag=LLC55_01210 NZ_CP086200.1 Protein Homology CDS 259895 260785 . - 0 ID=cds-WP_011257227.1;Parent=gene-LLC55_RS01210;Dbxref=Genbank:WP_011257227.1;Name=WP_011257227.1;Ontology_term=GO:0006559,GO:0004505;gbkey=CDS;gene=phhA;go_function=phenylalanine 4-monooxygenase activity|0004505||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158567.1;locus_tag=LLC55_RS01210;product=phenylalanine 4-monooxygenase;protein_id=WP_011257227.1;transl_table=11 NZ_CP086200.1 RefSeq gene 260913 261395 . + . ID=gene-LLC55_RS01215;Name=LLC55_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01215;old_locus_tag=LLC55_01215 NZ_CP086200.1 Protein Homology CDS 260913 261395 . + 0 ID=cds-WP_011407307.1;Parent=gene-LLC55_RS01215;Dbxref=Genbank:WP_011407307.1;Name=WP_011407307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912138.1;locus_tag=LLC55_RS01215;product=Lrp/AsnC family transcriptional regulator;protein_id=WP_011407307.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 261686 263282 . + . ID=gene-LLC55_RS01220;Name=LLC55_RS01220;end_range=263282,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01220;old_locus_tag=LLC55_01220;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 261686 263282 . + 0 ID=cds-LLC55_RS01220;Parent=gene-LLC55_RS01220;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=263282,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157370.1;locus_tag=LLC55_RS01220;partial=true;product=TonB-dependent receptor;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 263288 263494 . - . ID=gene-LLC55_RS01225;Name=LLC55_RS01225;end_range=263494,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01225;old_locus_tag=LLC55_01225;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 263288 263494 . - 0 ID=cds-LLC55_RS01225;Parent=gene-LLC55_RS01225;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=263494,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS01225;partial=true;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 263493 264089 . - . ID=gene-LLC55_RS01230;Name=LLC55_RS01230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01230;old_locus_tag=LLC55_01230;partial=true;pseudo=true;start_range=.,263493 NZ_CP086200.1 Protein Homology CDS 263493 264089 . - 0 ID=cds-LLC55_RS01230;Parent=gene-LLC55_RS01230;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS01230;partial=true;product=transposase;pseudo=true;start_range=.,263493;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 264207 264373 . + . ID=gene-LLC55_RS01235;Name=LLC55_RS01235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01235;old_locus_tag=LLC55_01235;partial=true;pseudo=true;start_range=.,264207 NZ_CP086200.1 Protein Homology CDS 264207 264373 . + 0 ID=cds-LLC55_RS01235;Parent=gene-LLC55_RS01235;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155195.1;locus_tag=LLC55_RS01235;partial=true;product=ribonuclease E inhibitor RraB;pseudo=true;start_range=.,264207;transl_table=11 NZ_CP086200.1 RefSeq gene 264431 264964 . - . ID=gene-LLC55_RS01240;Name=LLC55_RS01240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01240;old_locus_tag=LLC55_01240 NZ_CP086200.1 Protein Homology CDS 264431 264964 . - 0 ID=cds-WP_011257232.1;Parent=gene-LLC55_RS01240;Dbxref=Genbank:WP_011257232.1;Name=WP_011257232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155196.1;locus_tag=LLC55_RS01240;product=lipocalin family protein;protein_id=WP_011257232.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 265112 266297 . + . ID=gene-LLC55_RS01245;Name=LLC55_RS01245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01245;old_locus_tag=LLC55_01245;pseudo=true NZ_CP086200.1 Protein Homology CDS 265112 266297 . + 0 ID=cds-LLC55_RS01245;Parent=gene-LLC55_RS01245;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611322.1;locus_tag=LLC55_RS01245;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 266359 266526 . - . ID=gene-LLC55_RS01250;Name=LLC55_RS01250;end_range=266526,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01250;old_locus_tag=LLC55_01250;partial=true;pseudo=true;start_range=.,266359 NZ_CP086200.1 Protein Homology CDS 266359 266526 . - 0 ID=cds-LLC55_RS01250;Parent=gene-LLC55_RS01250;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=266526,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS01250;partial=true;product=transposase;pseudo=true;start_range=.,266359;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 266651 267611 . + . ID=gene-LLC55_RS01255;Name=LLC55_RS01255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01255;old_locus_tag=LLC55_01255;pseudo=true NZ_CP086200.1 Protein Homology CDS 266651 267611 . + 0 ID=cds-LLC55_RS01255;Parent=gene-LLC55_RS01255;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS01255;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 267780 268838 . - . ID=gene-LLC55_RS01260;Name=LLC55_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01260;old_locus_tag=LLC55_01260 NZ_CP086200.1 Protein Homology CDS 267780 268838 . - 0 ID=cds-WP_011407313.1;Parent=gene-LLC55_RS01260;Dbxref=Genbank:WP_011407313.1;Name=WP_011407313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851500.1;locus_tag=LLC55_RS01260;product=NAD(P)-dependent alcohol dehydrogenase;protein_id=WP_011407313.1;transl_table=11 NZ_CP086200.1 RefSeq gene 269146 270219 . + . ID=gene-LLC55_RS01265;Name=LLC55_RS01265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01265;old_locus_tag=LLC55_01265 NZ_CP086200.1 Protein Homology CDS 269146 270219 . + 0 ID=cds-WP_011257237.1;Parent=gene-LLC55_RS01265;Dbxref=Genbank:WP_011257237.1;Name=WP_011257237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345792.1;locus_tag=LLC55_RS01265;product=glycoside hydrolase family 5 protein;protein_id=WP_011257237.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 270669 270862 . + . ID=gene-LLC55_RS01270;Name=LLC55_RS01270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01270;old_locus_tag=LLC55_01270;partial=true;pseudo=true;start_range=.,270669 NZ_CP086200.1 Protein Homology CDS 270669 270862 . + 0 ID=cds-LLC55_RS01270;Parent=gene-LLC55_RS01270;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154987.1;locus_tag=LLC55_RS01270;partial=true;product=hypothetical protein;pseudo=true;start_range=.,270669;transl_table=11 NZ_CP086200.1 RefSeq gene 270982 272034 . + . ID=gene-LLC55_RS01275;Name=LLC55_RS01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01275;old_locus_tag=LLC55_01275 NZ_CP086200.1 Protein Homology CDS 270982 272034 . + 0 ID=cds-WP_011257238.1;Parent=gene-LLC55_RS01275;Dbxref=Genbank:WP_011257238.1;Name=WP_011257238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375107.1;locus_tag=LLC55_RS01275;product=glycoside hydrolase family 5 protein;protein_id=WP_011257238.1;transl_table=11 NZ_CP086200.1 RefSeq gene 272039 272115 . - . ID=gene-LLC55_RS01280;Name=LLC55_RS01280;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS01280;old_locus_tag=LLC55_01280 NZ_CP086200.1 cmsearch ncRNA 272039 272115 . - . ID=rna-LLC55_RS01280;Parent=gene-LLC55_RS01280;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01280;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 272039 272115 . - . ID=exon-LLC55_RS01280-1;Parent=rna-LLC55_RS01280;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01280;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 272682 273812 . + . ID=gene-LLC55_RS01285;Name=LLC55_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01285;old_locus_tag=LLC55_01285 NZ_CP086200.1 Protein Homology CDS 272682 273812 . + 0 ID=cds-WP_011257239.1;Parent=gene-LLC55_RS01285;Dbxref=Genbank:WP_011257239.1;Name=WP_011257239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163756.1;locus_tag=LLC55_RS01285;product=glycoside hydrolase family 5 protein;protein_id=WP_011257239.1;transl_table=11 NZ_CP086200.1 RefSeq gene 273981 274949 . + . ID=gene-LLC55_RS01290;Name=LLC55_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01290;old_locus_tag=LLC55_01290 NZ_CP086200.1 Protein Homology CDS 273981 274949 . + 0 ID=cds-WP_011258529.1;Parent=gene-LLC55_RS01290;Dbxref=Genbank:WP_011258529.1;Name=WP_011258529.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS01290;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258529.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 275227 276181 . + . ID=gene-LLC55_RS01295;Name=LLC55_RS01295;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01295;old_locus_tag=LLC55_01295;pseudo=true NZ_CP086200.1 Protein Homology CDS 275227 276181 . + 0 ID=cds-LLC55_RS01295;Parent=gene-LLC55_RS01295;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_082322974.1;locus_tag=LLC55_RS01295;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 276296 276685 . + . ID=gene-LLC55_RS01300;Name=LLC55_RS01300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01300;old_locus_tag=LLC55_01300 NZ_CP086200.1 Protein Homology CDS 276296 276685 . + 0 ID=cds-WP_011257241.1;Parent=gene-LLC55_RS01300;Dbxref=Genbank:WP_011257241.1;Name=WP_011257241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571430.1;locus_tag=LLC55_RS01300;product=YchJ family protein;protein_id=WP_011257241.1;transl_table=11 NZ_CP086200.1 RefSeq gene 276893 277099 . + . ID=gene-LLC55_RS01305;Name=LLC55_RS01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01305;old_locus_tag=LLC55_01305 NZ_CP086200.1 Protein Homology CDS 276893 277099 . + 0 ID=cds-WP_011407316.1;Parent=gene-LLC55_RS01305;Dbxref=Genbank:WP_011407316.1;Name=WP_011407316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154992.1;locus_tag=LLC55_RS01305;product=hypothetical protein;protein_id=WP_011407316.1;transl_table=11 NZ_CP086200.1 RefSeq gene 277142 277216 . - . ID=gene-LLC55_RS01310;Name=LLC55_RS01310;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS01310;old_locus_tag=LLC55_01310 NZ_CP086200.1 cmsearch ncRNA 277142 277216 . - . ID=rna-LLC55_RS01310;Parent=gene-LLC55_RS01310;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01310;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 277142 277216 . - . ID=exon-LLC55_RS01310-1;Parent=rna-LLC55_RS01310;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01310;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 277331 278299 . + . ID=gene-LLC55_RS01315;Name=LLC55_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01315;old_locus_tag=LLC55_01315 NZ_CP086200.1 Protein Homology CDS 277331 278299 . + 0 ID=cds-WP_011257031.1;Parent=gene-LLC55_RS01315;Dbxref=Genbank:WP_011257031.1;Name=WP_011257031.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS01315;product=IS5-like element ISXo1 family transposase;protein_id=WP_011257031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 278553 280715 . + . ID=gene-LLC55_RS01320;Name=LLC55_RS01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01320;old_locus_tag=LLC55_01320 NZ_CP086200.1 Protein Homology CDS 278553 280715 . + 0 ID=cds-WP_011257243.1;Parent=gene-LLC55_RS01320;Dbxref=Genbank:WP_011257243.1;Name=WP_011257243.1;Ontology_term=GO:0009253,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574667.1;locus_tag=LLC55_RS01320;product=lytic murein transglycosylase;protein_id=WP_011257243.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 281263 282526 . + . ID=gene-LLC55_RS01325;Name=LLC55_RS01325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01325;old_locus_tag=LLC55_01325;pseudo=true NZ_CP086200.1 Protein Homology CDS 281263 282526 . + 0 ID=cds-LLC55_RS01325;Parent=gene-LLC55_RS01325;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302308.1;locus_tag=LLC55_RS01325;product=TCR/Tet family MFS transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 282627 283229 . + . ID=gene-LLC55_RS01330;Name=LLC55_RS01330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01330;old_locus_tag=LLC55_01330 NZ_CP086200.1 Protein Homology CDS 282627 283229 . + 0 ID=cds-WP_011407319.1;Parent=gene-LLC55_RS01330;Dbxref=Genbank:WP_011407319.1;Name=WP_011407319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501447.1;locus_tag=LLC55_RS01330;product=biliverdin-producing heme oxygenase;protein_id=WP_011407319.1;transl_table=11 NZ_CP086200.1 RefSeq gene 283226 285130 . + . ID=gene-LLC55_RS01335;Name=LLC55_RS01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01335;old_locus_tag=LLC55_01335 NZ_CP086200.1 Protein Homology CDS 283226 285130 . + 0 ID=cds-WP_011257245.1;Parent=gene-LLC55_RS01335;Dbxref=Genbank:WP_011257245.1;Name=WP_011257245.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501448.1;locus_tag=LLC55_RS01335;product=GAF domain-containing protein;protein_id=WP_011257245.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 285239 286409 . - . ID=gene-LLC55_RS01340;Name=LLC55_RS01340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01340;old_locus_tag=LLC55_01340;pseudo=true NZ_CP086200.1 Protein Homology CDS 285239 286409 . - 0 ID=cds-LLC55_RS01340;Parent=gene-LLC55_RS01340;Note=frameshifted;Ontology_term=GO:0042919,GO:0042925,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=benzoate transmembrane transporter activity|0042925||IEA;go_process=benzoate transport|0042919||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916614.1;locus_tag=LLC55_RS01340;product=benzoate/H(+) symporter BenE family transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 287161 288707 . + . ID=gene-LLC55_RS01345;Name=LLC55_RS01345;gbkey=Gene;gene_biotype=rRNA;locus_tag=LLC55_RS01345;old_locus_tag=LLC55_01345 NZ_CP086200.1 cmsearch rRNA 287161 288707 . + . ID=rna-LLC55_RS01345;Parent=gene-LLC55_RS01345;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01345;product=16S ribosomal RNA NZ_CP086200.1 cmsearch exon 287161 288707 . + . ID=exon-LLC55_RS01345-1;Parent=rna-LLC55_RS01345;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01345;product=16S ribosomal RNA NZ_CP086200.1 RefSeq gene 288801 288876 . + . ID=gene-LLC55_RS01350;Name=LLC55_RS01350;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS01350;old_locus_tag=LLC55_01350 NZ_CP086200.1 tRNAscan-SE tRNA 288801 288876 . + . ID=rna-LLC55_RS01350;Parent=gene-LLC55_RS01350;anticodon=(pos:288834..288836);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS01350;product=tRNA-Ala NZ_CP086200.1 tRNAscan-SE exon 288801 288876 . + . ID=exon-LLC55_RS01350-1;Parent=rna-LLC55_RS01350;anticodon=(pos:288834..288836);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS01350;product=tRNA-Ala NZ_CP086200.1 RefSeq gene 288896 288972 . + . ID=gene-LLC55_RS01355;Name=LLC55_RS01355;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS01355;old_locus_tag=LLC55_01355 NZ_CP086200.1 tRNAscan-SE tRNA 288896 288972 . + . ID=rna-LLC55_RS01355;Parent=gene-LLC55_RS01355;anticodon=(pos:288930..288932);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS01355;product=tRNA-Ile NZ_CP086200.1 tRNAscan-SE exon 288896 288972 . + . ID=exon-LLC55_RS01355-1;Parent=rna-LLC55_RS01355;anticodon=(pos:288930..288932);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS01355;product=tRNA-Ile NZ_CP086200.1 RefSeq gene 289200 292082 . + . ID=gene-LLC55_RS01360;Name=LLC55_RS01360;gbkey=Gene;gene_biotype=rRNA;locus_tag=LLC55_RS01360;old_locus_tag=LLC55_01360 NZ_CP086200.1 cmsearch rRNA 289200 292082 . + . ID=rna-LLC55_RS01360;Parent=gene-LLC55_RS01360;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01360;product=23S ribosomal RNA NZ_CP086200.1 cmsearch exon 289200 292082 . + . ID=exon-LLC55_RS01360-1;Parent=rna-LLC55_RS01360;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01360;product=23S ribosomal RNA NZ_CP086200.1 RefSeq gene 292256 292370 . + . ID=gene-LLC55_RS01365;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=LLC55_RS01365;old_locus_tag=LLC55_01365 NZ_CP086200.1 cmsearch rRNA 292256 292370 . + . ID=rna-LLC55_RS01365;Parent=gene-LLC55_RS01365;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01365;product=5S ribosomal RNA NZ_CP086200.1 cmsearch exon 292256 292370 . + . ID=exon-LLC55_RS01365-1;Parent=rna-LLC55_RS01365;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01365;product=5S ribosomal RNA NZ_CP086200.1 RefSeq pseudogene 292467 293509 . - . ID=gene-LLC55_RS01370;Name=LLC55_RS01370;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01370;old_locus_tag=LLC55_01370;pseudo=true NZ_CP086200.1 Protein Homology CDS 292467 293509 . - 0 ID=cds-LLC55_RS01370;Parent=gene-LLC55_RS01370;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS01370;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 293636 293926 . - . ID=gene-LLC55_RS01375;Name=LLC55_RS01375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01375;old_locus_tag=LLC55_01375;partial=true;pseudo=true;start_range=.,293636 NZ_CP086200.1 Protein Homology CDS 293636 293926 . - 0 ID=cds-LLC55_RS01375;Parent=gene-LLC55_RS01375;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS01375;partial=true;product=transposase;pseudo=true;start_range=.,293636;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 294012 294206 . - . ID=gene-LLC55_RS01380;Name=LLC55_RS01380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01380;old_locus_tag=LLC55_01380;partial=true;pseudo=true;start_range=.,294012 NZ_CP086200.1 Protein Homology CDS 294012 294206 . - 0 ID=cds-LLC55_RS01380;Parent=gene-LLC55_RS01380;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS01380;partial=true;product=transposase;pseudo=true;start_range=.,294012;transl_table=11 NZ_CP086200.1 RefSeq gene 294450 295265 . + . ID=gene-LLC55_RS01385;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=LLC55_RS01385;old_locus_tag=LLC55_01385 NZ_CP086200.1 Protein Homology CDS 294450 295265 . + 0 ID=cds-WP_011407325.1;Parent=gene-LLC55_RS01385;Dbxref=Genbank:WP_011407325.1;Name=WP_011407325.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439681.1;locus_tag=LLC55_RS01385;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_011407325.1;transl_table=11 NZ_CP086200.1 RefSeq gene 295612 296574 . - . ID=gene-LLC55_RS01390;Name=LLC55_RS01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01390;old_locus_tag=LLC55_01390 NZ_CP086200.1 Protein Homology CDS 295612 296574 . - 0 ID=cds-WP_041182297.1;Parent=gene-LLC55_RS01390;Dbxref=Genbank:WP_041182297.1;Name=WP_041182297.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182294.1;locus_tag=LLC55_RS01390;product=IS1595-like element ISXo2 family transposase;protein_id=WP_041182297.1;transl_table=11 NZ_CP086200.1 RefSeq gene 296679 297442 . + . ID=gene-LLC55_RS01395;Name=LLC55_RS01395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01395;old_locus_tag=LLC55_01395 NZ_CP086200.1 Protein Homology CDS 296679 296994 . + 0 ID=cds-WP_109182012.1;Parent=gene-LLC55_RS01395;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS01395;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 296994 297442 . + 2 ID=cds-WP_109182012.1;Parent=gene-LLC55_RS01395;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS01395;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 297572 298948 . + . ID=gene-LLC55_RS01400;Name=LLC55_RS01400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01400;old_locus_tag=LLC55_01400;pseudo=true NZ_CP086200.1 Protein Homology CDS 297572 298948 . + 0 ID=cds-LLC55_RS01400;Parent=gene-LLC55_RS01400;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS01400;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 299241 300299 . - . ID=gene-LLC55_RS01405;Name=LLC55_RS01405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01405;old_locus_tag=LLC55_01405 NZ_CP086200.1 Protein Homology CDS 299241 300299 . - 0 ID=cds-WP_011257253.1;Parent=gene-LLC55_RS01405;Dbxref=Genbank:WP_011257253.1;Name=WP_011257253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163758.1;locus_tag=LLC55_RS01405;product=VacJ family lipoprotein;protein_id=WP_011257253.1;transl_table=11 NZ_CP086200.1 RefSeq gene 300310 300600 . - . ID=gene-LLC55_RS01410;Name=LLC55_RS01410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01410;old_locus_tag=LLC55_01410 NZ_CP086200.1 Protein Homology CDS 300310 300600 . - 0 ID=cds-WP_011257254.1;Parent=gene-LLC55_RS01410;Dbxref=Genbank:WP_011257254.1;Name=WP_011257254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257254.1;locus_tag=LLC55_RS01410;product=STAS domain-containing protein;protein_id=WP_011257254.1;transl_table=11 NZ_CP086200.1 RefSeq gene 300590 301252 . - . ID=gene-LLC55_RS01415;Name=LLC55_RS01415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01415;old_locus_tag=LLC55_01415 NZ_CP086200.1 Protein Homology CDS 300590 301252 . - 0 ID=cds-WP_011257255.1;Parent=gene-LLC55_RS01415;Dbxref=Genbank:WP_011257255.1;Name=WP_011257255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482305.1;locus_tag=LLC55_RS01415;product=ABC transporter substrate-binding protein;protein_id=WP_011257255.1;transl_table=11 NZ_CP086200.1 RefSeq gene 301249 301800 . - . ID=gene-LLC55_RS01420;Name=mlaD;gbkey=Gene;gene=mlaD;gene_biotype=protein_coding;locus_tag=LLC55_RS01420;old_locus_tag=LLC55_01420 NZ_CP086200.1 Protein Homology CDS 301249 301800 . - 0 ID=cds-WP_012446379.1;Parent=gene-LLC55_RS01420;Dbxref=Genbank:WP_012446379.1;Name=WP_012446379.1;Ontology_term=GO:0015914;gbkey=CDS;gene=mlaD;go_process=phospholipid transport|0015914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575276.1;locus_tag=LLC55_RS01420;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_012446379.1;transl_table=11 NZ_CP086200.1 RefSeq gene 301812 302561 . - . ID=gene-LLC55_RS01425;Name=LLC55_RS01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01425;old_locus_tag=LLC55_01425 NZ_CP086200.1 Protein Homology CDS 301812 302561 . - 0 ID=cds-WP_011257257.1;Parent=gene-LLC55_RS01425;Dbxref=Genbank:WP_011257257.1;Name=WP_011257257.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302478.1;locus_tag=LLC55_RS01425;product=MlaE family lipid ABC transporter permease subunit;protein_id=WP_011257257.1;transl_table=11 NZ_CP086200.1 RefSeq gene 302561 303355 . - . ID=gene-LLC55_RS01430;Name=LLC55_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01430;old_locus_tag=LLC55_01430 NZ_CP086200.1 Protein Homology CDS 302561 303355 . - 0 ID=cds-WP_011407332.1;Parent=gene-LLC55_RS01430;Dbxref=Genbank:WP_011407332.1;Name=WP_011407332.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451570.1;locus_tag=LLC55_RS01430;product=ATP-binding cassette domain-containing protein;protein_id=WP_011407332.1;transl_table=11 NZ_CP086200.1 RefSeq gene 303740 304027 . + . ID=gene-LLC55_RS01435;Name=LLC55_RS01435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01435;old_locus_tag=LLC55_01435 NZ_CP086200.1 Protein Homology CDS 303740 304027 . + 0 ID=cds-WP_011257259.1;Parent=gene-LLC55_RS01435;Dbxref=Genbank:WP_011257259.1;Name=WP_011257259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364918.1;locus_tag=LLC55_RS01435;product=hypothetical protein;protein_id=WP_011257259.1;transl_table=11 NZ_CP086200.1 RefSeq gene 304046 304603 . - . ID=gene-LLC55_RS01440;Name=LLC55_RS01440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01440;old_locus_tag=LLC55_01440 NZ_CP086200.1 Protein Homology CDS 304046 304603 . - 0 ID=cds-WP_027703982.1;Parent=gene-LLC55_RS01440;Dbxref=Genbank:WP_027703982.1;Name=WP_027703982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112941.1;locus_tag=LLC55_RS01440;product=GNAT family N-acetyltransferase;protein_id=WP_027703982.1;transl_table=11 NZ_CP086200.1 RefSeq gene 304621 305586 . - . ID=gene-LLC55_RS01445;Name=LLC55_RS01445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01445;old_locus_tag=LLC55_01445 NZ_CP086200.1 Protein Homology CDS 304621 305586 . - 0 ID=cds-WP_109182061.1;Parent=gene-LLC55_RS01445;Dbxref=Genbank:WP_109182061.1;Name=WP_109182061.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS01445;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182061.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 305675 306343 . - . ID=gene-LLC55_RS01450;Name=LLC55_RS01450;end_range=306343,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01450;old_locus_tag=LLC55_01450;partial=true;pseudo=true;start_range=.,305675 NZ_CP086200.1 Protein Homology CDS 305675 306343 . - 0 ID=cds-LLC55_RS01450;Parent=gene-LLC55_RS01450;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0004803;end_range=306343,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011238416.1;locus_tag=LLC55_RS01450;partial=true;product=IS630 family transposase;pseudo=true;start_range=.,305675;transl_table=11 NZ_CP086200.1 RefSeq gene 306431 307387 . + . ID=gene-LLC55_RS01455;Name=LLC55_RS01455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01455;old_locus_tag=LLC55_01455 NZ_CP086200.1 Protein Homology CDS 306431 307387 . + 0 ID=cds-WP_069959685.1;Parent=gene-LLC55_RS01455;Dbxref=Genbank:WP_069959685.1;Name=WP_069959685.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_082322974.1;locus_tag=LLC55_RS01455;product=IS30-like element IS1112 family transposase;protein_id=WP_069959685.1;transl_table=11 NZ_CP086200.1 RefSeq gene 307459 308222 . + . ID=gene-LLC55_RS01460;Name=LLC55_RS01460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01460;old_locus_tag=LLC55_01460 NZ_CP086200.1 Protein Homology CDS 307459 307774 . + 0 ID=cds-WP_109182012.1-2;Parent=gene-LLC55_RS01460;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS01460;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 307774 308222 . + 2 ID=cds-WP_109182012.1-2;Parent=gene-LLC55_RS01460;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS01460;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 RefSeq gene 308261 309059 . - . ID=gene-LLC55_RS01465;Name=LLC55_RS01465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01465;old_locus_tag=LLC55_01465 NZ_CP086200.1 Protein Homology CDS 308788 309059 . - 0 ID=cds-WP_109182062.1;Parent=gene-LLC55_RS01465;Dbxref=Genbank:WP_109182062.1;Name=WP_109182062.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS01465;product=IS5 family transposase;protein_id=WP_109182062.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 308261 308789 . - 1 ID=cds-WP_109182062.1;Parent=gene-LLC55_RS01465;Dbxref=Genbank:WP_109182062.1;Name=WP_109182062.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS01465;product=IS5 family transposase;protein_id=WP_109182062.1;transl_table=11 NZ_CP086200.1 RefSeq gene 309191 310405 . + . ID=gene-LLC55_RS01470;Name=LLC55_RS01470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01470;old_locus_tag=LLC55_01470 NZ_CP086200.1 Protein Homology CDS 309191 310405 . + 0 ID=cds-WP_011407338.1;Parent=gene-LLC55_RS01470;Dbxref=Genbank:WP_011407338.1;Name=WP_011407338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS01470;product=IS4-like element ISXo14 family transposase;protein_id=WP_011407338.1;transl_table=11 NZ_CP086200.1 RefSeq gene 310465 311296 . + . ID=gene-LLC55_RS01475;Name=LLC55_RS01475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01475;old_locus_tag=LLC55_01475 NZ_CP086200.1 Protein Homology CDS 310465 310736 . + 0 ID=cds-WP_109182063.1;Parent=gene-LLC55_RS01475;Dbxref=Genbank:WP_109182063.1;Name=WP_109182063.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS01475;product=IS5 family transposase;protein_id=WP_109182063.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 310735 311296 . + 1 ID=cds-WP_109182063.1;Parent=gene-LLC55_RS01475;Dbxref=Genbank:WP_109182063.1;Name=WP_109182063.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS01475;product=IS5 family transposase;protein_id=WP_109182063.1;transl_table=11 NZ_CP086200.1 RefSeq gene 311458 312693 . - . ID=gene-LLC55_RS01480;Name=LLC55_RS01480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01480;old_locus_tag=LLC55_01480 NZ_CP086200.1 Protein Homology CDS 311458 312693 . - 0 ID=cds-WP_011257269.1;Parent=gene-LLC55_RS01480;Dbxref=Genbank:WP_011257269.1;Name=WP_011257269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS01480;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011257269.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 312746 313772 . - . ID=gene-LLC55_RS01485;Name=LLC55_RS01485;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01485;old_locus_tag=LLC55_01485;pseudo=true NZ_CP086200.1 Protein Homology CDS 312746 313772 . - 0 ID=cds-LLC55_RS01485;Parent=gene-LLC55_RS01485;Note=programmed frameshift%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612183.1;locus_tag=LLC55_RS01485;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 314092 314520 . + . ID=gene-LLC55_RS01490;Name=LLC55_RS01490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01490;old_locus_tag=LLC55_01490 NZ_CP086200.1 Protein Homology CDS 314092 314520 . + 0 ID=cds-WP_011257271.1;Parent=gene-LLC55_RS01490;Dbxref=Genbank:WP_011257271.1;Name=WP_011257271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303396.1;locus_tag=LLC55_RS01490;product=hypothetical protein;protein_id=WP_011257271.1;transl_table=11 NZ_CP086200.1 RefSeq gene 314531 314980 . + . ID=gene-LLC55_RS01495;Name=LLC55_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01495;old_locus_tag=LLC55_01495 NZ_CP086200.1 Protein Homology CDS 314531 314980 . + 0 ID=cds-WP_011407344.1;Parent=gene-LLC55_RS01495;Dbxref=Genbank:WP_011407344.1;Name=WP_011407344.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966506.1;locus_tag=LLC55_RS01495;product=3-dehydroquinate dehydratase;protein_id=WP_011407344.1;transl_table=11 NZ_CP086200.1 RefSeq gene 314961 315188 . + . ID=gene-LLC55_RS01500;Name=LLC55_RS01500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01500;old_locus_tag=LLC55_01500 NZ_CP086200.1 Protein Homology CDS 314961 315188 . + 0 ID=cds-WP_011257273.1;Parent=gene-LLC55_RS01500;Dbxref=Genbank:WP_011257273.1;Name=WP_011257273.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849816.1;locus_tag=LLC55_RS01500;product=hypothetical protein;protein_id=WP_011257273.1;transl_table=11 NZ_CP086200.1 RefSeq gene 315496 317250 . - . ID=gene-LLC55_RS01505;Name=LLC55_RS01505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01505;old_locus_tag=LLC55_01505 NZ_CP086200.1 Protein Homology CDS 315496 317250 . - 0 ID=cds-WP_011407346.1;Parent=gene-LLC55_RS01505;Dbxref=Genbank:WP_011407346.1;Name=WP_011407346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923088.1;locus_tag=LLC55_RS01505;product=PQQ-binding-like beta-propeller repeat protein;protein_id=WP_011407346.1;transl_table=11 NZ_CP086200.1 RefSeq gene 318194 318957 . + . ID=gene-LLC55_RS01510;Name=LLC55_RS01510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01510;old_locus_tag=LLC55_01510 NZ_CP086200.1 Protein Homology CDS 318194 318509 . + 0 ID=cds-WP_109182012.1-3;Parent=gene-LLC55_RS01510;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS01510;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 318509 318957 . + 2 ID=cds-WP_109182012.1-3;Parent=gene-LLC55_RS01510;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS01510;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 RefSeq gene 319010 319594 . - . ID=gene-LLC55_RS01515;Name=LLC55_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01515;old_locus_tag=LLC55_01515 NZ_CP086200.1 Protein Homology CDS 319010 319594 . - 0 ID=cds-WP_027703800.1;Parent=gene-LLC55_RS01515;Dbxref=Genbank:WP_027703800.1;Name=WP_027703800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571736.1;locus_tag=LLC55_RS01515;product=gluconokinase;protein_id=WP_027703800.1;transl_table=11 NZ_CP086200.1 RefSeq gene 319752 321134 . + . ID=gene-LLC55_RS01520;Name=LLC55_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01520;old_locus_tag=LLC55_01520 NZ_CP086200.1 Protein Homology CDS 319752 321134 . + 0 ID=cds-WP_011407349.1;Parent=gene-LLC55_RS01520;Dbxref=Genbank:WP_011407349.1;Name=WP_011407349.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302349.1;locus_tag=LLC55_RS01520;product=MFS transporter;protein_id=WP_011407349.1;transl_table=11 NZ_CP086200.1 RefSeq gene 321137 323536 . + . ID=gene-LLC55_RS01525;Name=LLC55_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01525;old_locus_tag=LLC55_01525 NZ_CP086200.1 Protein Homology CDS 321137 323536 . + 0 ID=cds-WP_044757567.1;Parent=gene-LLC55_RS01525;Dbxref=Genbank:WP_044757567.1;Name=WP_044757567.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487634.1;locus_tag=LLC55_RS01525;product=NdvB protein;protein_id=WP_044757567.1;transl_table=11 NZ_CP086200.1 RefSeq gene 323640 326282 . - . ID=gene-LLC55_RS01530;Name=LLC55_RS01530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01530;old_locus_tag=LLC55_01530 NZ_CP086200.1 Protein Homology CDS 323640 326282 . - 0 ID=cds-WP_075242185.1;Parent=gene-LLC55_RS01530;Dbxref=Genbank:WP_075242185.1;Name=WP_075242185.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966495.1;locus_tag=LLC55_RS01530;product=glycosyl hydrolase 115 family protein;protein_id=WP_075242185.1;transl_table=11 NZ_CP086200.1 RefSeq gene 327027 330479 . + . ID=gene-LLC55_RS01535;Name=LLC55_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01535;old_locus_tag=LLC55_01535 NZ_CP086200.1 Protein Homology CDS 327027 330479 . + 0 ID=cds-WP_011407352.1;Parent=gene-LLC55_RS01535;Dbxref=Genbank:WP_011407352.1;Name=WP_011407352.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446364.1;locus_tag=LLC55_RS01535;product=PAS domain-containing hybrid sensor histidine kinase/response regulator;protein_id=WP_011407352.1;transl_table=11 NZ_CP086200.1 RefSeq gene 330672 331256 . - . ID=gene-LLC55_RS01540;Name=LLC55_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01540;old_locus_tag=LLC55_01540 NZ_CP086200.1 Protein Homology CDS 330672 331256 . - 0 ID=cds-WP_011407353.1;Parent=gene-LLC55_RS01540;Dbxref=Genbank:WP_011407353.1;Name=WP_011407353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407353.1;locus_tag=LLC55_RS01540;product=manganese efflux pump MntP family protein;protein_id=WP_011407353.1;transl_table=11 NZ_CP086200.1 RefSeq gene 331733 332509 . - . ID=gene-LLC55_RS01545;Name=LLC55_RS01545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01545;old_locus_tag=LLC55_01545 NZ_CP086200.1 Protein Homology CDS 331733 332509 . - 0 ID=cds-WP_011407354.1;Parent=gene-LLC55_RS01545;Dbxref=Genbank:WP_011407354.1;Name=WP_011407354.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407354.1;locus_tag=LLC55_RS01545;product=helix-turn-helix domain-containing protein;protein_id=WP_011407354.1;transl_table=11 NZ_CP086200.1 RefSeq gene 332690 333991 . + . ID=gene-LLC55_RS01550;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=LLC55_RS01550;old_locus_tag=LLC55_01550 NZ_CP086200.1 Protein Homology CDS 332690 333991 . + 0 ID=cds-WP_069959686.1;Parent=gene-LLC55_RS01550;Dbxref=Genbank:WP_069959686.1;Name=WP_069959686.1;Ontology_term=GO:0015756,GO:0015535,GO:0005886;gbkey=CDS;gene=fucP;go_component=plasma membrane|0005886||IEA;go_function=fucose:proton symporter activity|0015535||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161920.1;locus_tag=LLC55_RS01550;product=L-fucose:H+ symporter permease;protein_id=WP_069959686.1;transl_table=11 NZ_CP086200.1 RefSeq gene 333994 334353 . + . ID=gene-LLC55_RS01555;Name=LLC55_RS01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01555;old_locus_tag=LLC55_01555 NZ_CP086200.1 Protein Homology CDS 333994 334353 . + 0 ID=cds-WP_011257283.1;Parent=gene-LLC55_RS01555;Dbxref=Genbank:WP_011257283.1;Name=WP_011257283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349049.1;locus_tag=LLC55_RS01555;product=L-fucose mutarotase;protein_id=WP_011257283.1;transl_table=11 NZ_CP086200.1 RefSeq gene 334790 336277 . + . ID=gene-LLC55_RS01560;Name=LLC55_RS01560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01560;old_locus_tag=LLC55_01560 NZ_CP086200.1 Protein Homology CDS 334790 336277 . + 0 ID=cds-WP_228329677.1;Parent=gene-LLC55_RS01560;Dbxref=Genbank:WP_228329677.1;Name=WP_228329677.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS01560;product=IS5-like element ISXoo5 family transposase;protein_id=WP_228329677.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 336288 336380 . - . ID=gene-LLC55_RS01565;Name=LLC55_RS01565;end_range=336380,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01565;old_locus_tag=LLC55_01565;partial=true;pseudo=true;start_range=.,336288 NZ_CP086200.1 Protein Homology CDS 336288 336380 . - 0 ID=cds-LLC55_RS01565;Parent=gene-LLC55_RS01565;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=336380,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_043768368.1;locus_tag=LLC55_RS01565;partial=true;product=IS200/IS605 family transposase;pseudo=true;start_range=.,336288;transl_table=11 NZ_CP086200.1 RefSeq gene 336470 337435 . + . ID=gene-LLC55_RS01570;Name=LLC55_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01570;old_locus_tag=LLC55_01570 NZ_CP086200.1 Protein Homology CDS 336470 337435 . + 0 ID=cds-WP_109182027.1;Parent=gene-LLC55_RS01570;Dbxref=Genbank:WP_109182027.1;Name=WP_109182027.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS01570;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182027.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 337441 337692 . - . ID=gene-LLC55_RS01575;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=pseudogene;locus_tag=LLC55_RS01575;old_locus_tag=LLC55_01575;partial=true;pseudo=true;start_range=.,337441 NZ_CP086200.1 Protein Homology CDS 337441 337692 . - 0 ID=cds-LLC55_RS01575;Parent=gene-LLC55_RS01575;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;gene=tnpA;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_043768368.1;locus_tag=LLC55_RS01575;partial=true;product=IS200/IS605 family transposase;pseudo=true;start_range=.,337441;transl_table=11 NZ_CP086200.1 RefSeq gene 338262 340424 . + . ID=gene-LLC55_RS01580;Name=xopN;gbkey=Gene;gene=xopN;gene_biotype=protein_coding;locus_tag=LLC55_RS01580;old_locus_tag=LLC55_01580 NZ_CP086200.1 Protein Homology CDS 338262 340424 . + 0 ID=cds-WP_011407357.1;Parent=gene-LLC55_RS01580;Dbxref=Genbank:WP_011407357.1;Name=WP_011407357.1;Ontology_term=GO:0030254;gbkey=CDS;gene=xopN;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115822.1;locus_tag=LLC55_RS01580;product=type III secretion system effector protein XopN;protein_id=WP_011407357.1;transl_table=11 NZ_CP086200.1 RefSeq gene 340551 342719 . - . ID=gene-LLC55_RS01585;Name=dcp;gbkey=Gene;gene=dcp;gene_biotype=protein_coding;locus_tag=LLC55_RS01585;old_locus_tag=LLC55_01585 NZ_CP086200.1 Protein Homology CDS 340551 342719 . - 0 ID=cds-WP_069959687.1;Parent=gene-LLC55_RS01585;Dbxref=Genbank:WP_069959687.1;Name=WP_069959687.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=dcp;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115821.1;locus_tag=LLC55_RS01585;product=peptidyl-dipeptidase Dcp;protein_id=WP_069959687.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 342828 342987 . - . ID=gene-LLC55_RS01590;Name=LLC55_RS01590;end_range=342987,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01590;old_locus_tag=LLC55_01590;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 342828 342987 . - 0 ID=cds-LLC55_RS01590;Parent=gene-LLC55_RS01590;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016787;end_range=342987,.;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117620.1;locus_tag=LLC55_RS01590;partial=true;product=isoaspartyl peptidase/L-asparaginase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 343093 343278 . - . ID=gene-LLC55_RS01595;Name=LLC55_RS01595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01595;old_locus_tag=LLC55_01595 NZ_CP086200.1 GeneMarkS-2+ CDS 343093 343278 . - 0 ID=cds-WP_012446356.1;Parent=gene-LLC55_RS01595;Dbxref=Genbank:WP_012446356.1;Name=WP_012446356.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS01595;product=hypothetical protein;protein_id=WP_012446356.1;transl_table=11 NZ_CP086200.1 RefSeq gene 343357 343986 . - . ID=gene-LLC55_RS01600;Name=LLC55_RS01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01600;old_locus_tag=LLC55_01600 NZ_CP086200.1 Protein Homology CDS 343357 343986 . - 0 ID=cds-WP_011257288.1;Parent=gene-LLC55_RS01600;Dbxref=Genbank:WP_011257288.1;Name=WP_011257288.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301090.1;locus_tag=LLC55_RS01600;product=lysophosphatidylcholine acyltransferase;protein_id=WP_011257288.1;transl_table=11 NZ_CP086200.1 RefSeq gene 343989 344420 . - . ID=gene-LLC55_RS01605;Name=arfB;gbkey=Gene;gene=arfB;gene_biotype=protein_coding;locus_tag=LLC55_RS01605;old_locus_tag=LLC55_01605 NZ_CP086200.1 Protein Homology CDS 343989 344420 . - 0 ID=cds-WP_011257289.1;Parent=gene-LLC55_RS01605;Dbxref=Genbank:WP_011257289.1;Name=WP_011257289.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=arfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257289.1;locus_tag=LLC55_RS01605;product=alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB;protein_id=WP_011257289.1;transl_table=11 NZ_CP086200.1 RefSeq gene 344477 345055 . + . ID=gene-LLC55_RS01610;Name=LLC55_RS01610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01610;old_locus_tag=LLC55_01610 NZ_CP086200.1 Protein Homology CDS 344477 345055 . + 0 ID=cds-WP_011407361.1;Parent=gene-LLC55_RS01610;Dbxref=Genbank:WP_011407361.1;Name=WP_011407361.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966404.1;locus_tag=LLC55_RS01610;product=DUF2059 domain-containing protein;protein_id=WP_011407361.1;transl_table=11 NZ_CP086200.1 RefSeq gene 345151 345903 . - . ID=gene-LLC55_RS01615;Name=LLC55_RS01615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01615;old_locus_tag=LLC55_01615 NZ_CP086200.1 Protein Homology CDS 345151 345903 . - 0 ID=cds-WP_027703865.1;Parent=gene-LLC55_RS01615;Dbxref=Genbank:WP_027703865.1;Name=WP_027703865.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301087.1;locus_tag=LLC55_RS01615;product=pseudouridine synthase;protein_id=WP_027703865.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 346128 346621 . - . ID=gene-LLC55_RS01620;Name=LLC55_RS01620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01620;old_locus_tag=LLC55_01620;pseudo=true NZ_CP086200.1 Protein Homology CDS 346128 346621 . - 0 ID=cds-LLC55_RS01620;Parent=gene-LLC55_RS01620;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156429.1;locus_tag=LLC55_RS01620;product=cupin domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 346631 348304 . - . ID=gene-LLC55_RS01625;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=LLC55_RS01625;old_locus_tag=LLC55_01625 NZ_CP086200.1 Protein Homology CDS 346631 348304 . - 0 ID=cds-WP_011257293.1;Parent=gene-LLC55_RS01625;Dbxref=Genbank:WP_011257293.1;Name=WP_011257293.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiB;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304665.1;locus_tag=LLC55_RS01625;product=ubiquinone biosynthesis regulatory protein kinase UbiB;protein_id=WP_011257293.1;transl_table=11 NZ_CP086200.1 RefSeq gene 348301 348945 . - . ID=gene-LLC55_RS01630;Name=LLC55_RS01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01630;old_locus_tag=LLC55_01630 NZ_CP086200.1 Protein Homology CDS 348301 348945 . - 0 ID=cds-WP_044757204.1;Parent=gene-LLC55_RS01630;Dbxref=Genbank:WP_044757204.1;Name=WP_044757204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156427.1;locus_tag=LLC55_RS01630;product=SCP2 sterol-binding domain-containing protein;protein_id=WP_044757204.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 349180 350280 . + . ID=gene-LLC55_RS01635;Name=ddlA;end_range=350280,.;gbkey=Gene;gene=ddlA;gene_biotype=pseudogene;locus_tag=LLC55_RS01635;old_locus_tag=LLC55_01635;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 349180 350280 . + 0 ID=cds-LLC55_RS01635;Parent=gene-LLC55_RS01635;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0008716;end_range=350280,.;gbkey=CDS;gene=ddlA;go_function=D-alanine-D-alanine ligase activity|0008716||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379859.1;locus_tag=LLC55_RS01635;partial=true;product=D-alanine--D-alanine ligase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 350777 352131 . - . ID=gene-LLC55_RS01640;Name=LLC55_RS01640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01640;old_locus_tag=LLC55_01640;pseudo=true NZ_CP086200.1 Protein Homology CDS 350777 352131 . - 0 ID=cds-LLC55_RS01640;Parent=gene-LLC55_RS01640;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS01640;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 352630 352914 . + . ID=gene-LLC55_RS01645;Name=LLC55_RS01645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01645;old_locus_tag=LLC55_01645 NZ_CP086200.1 Protein Homology CDS 352630 352914 . + 0 ID=cds-WP_011407366.1;Parent=gene-LLC55_RS01645;Dbxref=Genbank:WP_011407366.1;Name=WP_011407366.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444053.1;locus_tag=LLC55_RS01645;product=hypothetical protein;protein_id=WP_011407366.1;transl_table=11 NZ_CP086200.1 RefSeq gene 353117 353193 . - . ID=gene-LLC55_RS01650;Name=LLC55_RS01650;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS01650;old_locus_tag=LLC55_01650 NZ_CP086200.1 cmsearch ncRNA 353117 353193 . - . ID=rna-LLC55_RS01650;Parent=gene-LLC55_RS01650;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01650;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 353117 353193 . - . ID=exon-LLC55_RS01650-1;Parent=rna-LLC55_RS01650;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01650;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 353266 354064 . - . ID=gene-LLC55_RS01655;Name=LLC55_RS01655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01655;old_locus_tag=LLC55_01655 NZ_CP086200.1 Protein Homology CDS 353793 354064 . - 0 ID=cds-WP_115801865.1;Parent=gene-LLC55_RS01655;Dbxref=Genbank:WP_115801865.1;Name=WP_115801865.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS01655;product=IS5 family transposase;protein_id=WP_115801865.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 353266 353794 . - 1 ID=cds-WP_115801865.1;Parent=gene-LLC55_RS01655;Dbxref=Genbank:WP_115801865.1;Name=WP_115801865.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS01655;product=IS5 family transposase;protein_id=WP_115801865.1;transl_table=11 NZ_CP086200.1 RefSeq gene 354124 354887 . - . ID=gene-LLC55_RS01660;Name=LLC55_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01660;old_locus_tag=LLC55_01660 NZ_CP086200.1 Protein Homology CDS 354572 354887 . - 0 ID=cds-WP_094187710.1;Parent=gene-LLC55_RS01660;Dbxref=Genbank:WP_094187710.1;Name=WP_094187710.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS01660;product=IS5 family transposase;protein_id=WP_094187710.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 354124 354572 . - 2 ID=cds-WP_094187710.1;Parent=gene-LLC55_RS01660;Dbxref=Genbank:WP_094187710.1;Name=WP_094187710.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS01660;product=IS5 family transposase;protein_id=WP_094187710.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 355708 356748 . + . ID=gene-LLC55_RS01665;Name=LLC55_RS01665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01665;old_locus_tag=LLC55_01665;pseudo=true NZ_CP086200.1 Protein Homology CDS 355708 356748 . + 0 ID=cds-LLC55_RS01665;Parent=gene-LLC55_RS01665;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS01665;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 356832 357314 . - . ID=gene-LLC55_RS01670;Name=LLC55_RS01670;end_range=357314,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01670;old_locus_tag=LLC55_01670;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 356832 357314 . - 0 ID=cds-LLC55_RS01670;Parent=gene-LLC55_RS01670;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=357314,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS01670;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 357439 358757 . + . ID=gene-LLC55_RS01675;Name=LLC55_RS01675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01675;old_locus_tag=LLC55_01675;pseudo=true NZ_CP086200.1 Protein Homology CDS 357439 358757 . + 0 ID=cds-LLC55_RS01675;Parent=gene-LLC55_RS01675;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS01675;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 358841 359806 . - . ID=gene-LLC55_RS01680;Name=LLC55_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01680;old_locus_tag=LLC55_01680 NZ_CP086200.1 Protein Homology CDS 358841 359806 . - 0 ID=cds-WP_109182067.1;Parent=gene-LLC55_RS01680;Dbxref=Genbank:WP_109182067.1;Name=WP_109182067.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS01680;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182067.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 359893 360732 . - . ID=gene-LLC55_RS01685;Name=LLC55_RS01685;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01685;old_locus_tag=LLC55_01685;partial=true;pseudo=true;start_range=.,359893 NZ_CP086200.1 Protein Homology CDS 359893 360732 . - 0 ID=cds-LLC55_RS01685;Parent=gene-LLC55_RS01685;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS01685;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,359893;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 360867 362063 . + . ID=gene-LLC55_RS01690;Name=LLC55_RS01690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01690;old_locus_tag=LLC55_01690;pseudo=true NZ_CP086200.1 Protein Homology CDS 360867 362063 . + 0 ID=cds-LLC55_RS01690;Parent=gene-LLC55_RS01690;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611322.1;locus_tag=LLC55_RS01690;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 362116 363351 . + . ID=gene-LLC55_RS01695;Name=LLC55_RS01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01695;old_locus_tag=LLC55_01695 NZ_CP086200.1 Protein Homology CDS 362116 363351 . + 0 ID=cds-WP_069959761.1;Parent=gene-LLC55_RS01695;Dbxref=Genbank:WP_069959761.1;Name=WP_069959761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS01695;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_069959761.1;transl_table=11 NZ_CP086200.1 RefSeq gene 363518 363664 . + . ID=gene-LLC55_RS01700;Name=LLC55_RS01700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01700;old_locus_tag=LLC55_01700 NZ_CP086200.1 GeneMarkS-2+ CDS 363518 363664 . + 0 ID=cds-WP_178383653.1;Parent=gene-LLC55_RS01700;Dbxref=Genbank:WP_178383653.1;Name=WP_178383653.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS01700;product=hypothetical protein;protein_id=WP_178383653.1;transl_table=11 NZ_CP086200.1 RefSeq gene 363778 364716 . - . ID=gene-LLC55_RS01705;Name=panE;gbkey=Gene;gene=panE;gene_biotype=protein_coding;locus_tag=LLC55_RS01705;old_locus_tag=LLC55_01705 NZ_CP086200.1 Protein Homology CDS 363778 364716 . - 0 ID=cds-WP_042465421.1;Parent=gene-LLC55_RS01705;Dbxref=Genbank:WP_042465421.1;Name=WP_042465421.1;Ontology_term=GO:0015940,GO:0008677;gbkey=CDS;gene=panE;go_function=2-dehydropantoate 2-reductase activity|0008677||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091365.1;locus_tag=LLC55_RS01705;product=2-dehydropantoate 2-reductase;protein_id=WP_042465421.1;transl_table=11 NZ_CP086200.1 RefSeq gene 364835 365623 . - . ID=gene-LLC55_RS01710;Name=LLC55_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01710;old_locus_tag=LLC55_01710 NZ_CP086200.1 Protein Homology CDS 364835 365623 . - 0 ID=cds-WP_080493948.1;Parent=gene-LLC55_RS01710;Dbxref=Genbank:WP_080493948.1;Name=WP_080493948.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304284.1;locus_tag=LLC55_RS01710;product=DUF3800 domain-containing protein;protein_id=WP_080493948.1;transl_table=11 NZ_CP086200.1 RefSeq gene 365587 366399 . - . ID=gene-LLC55_RS01715;Name=LLC55_RS01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01715;old_locus_tag=LLC55_01715 NZ_CP086200.1 Protein Homology CDS 365587 366399 . - 0 ID=cds-WP_011257313.1;Parent=gene-LLC55_RS01715;Dbxref=Genbank:WP_011257313.1;Name=WP_011257313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156287.1;locus_tag=LLC55_RS01715;product=ABC transporter permease;protein_id=WP_011257313.1;transl_table=11 NZ_CP086200.1 RefSeq gene 366396 367391 . - . ID=gene-LLC55_RS01720;Name=LLC55_RS01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01720;old_locus_tag=LLC55_01720 NZ_CP086200.1 Protein Homology CDS 366396 367391 . - 0 ID=cds-WP_011257314.1;Parent=gene-LLC55_RS01720;Dbxref=Genbank:WP_011257314.1;Name=WP_011257314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348950.1;locus_tag=LLC55_RS01720;product=ABC transporter ATP-binding protein;protein_id=WP_011257314.1;transl_table=11 NZ_CP086200.1 RefSeq gene 367428 368255 . + . ID=gene-LLC55_RS01725;Name=LLC55_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01725;old_locus_tag=LLC55_01725 NZ_CP086200.1 Protein Homology CDS 367428 368255 . + 0 ID=cds-WP_075242284.1;Parent=gene-LLC55_RS01725;Dbxref=Genbank:WP_075242284.1;Name=WP_075242284.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091363.1;locus_tag=LLC55_RS01725;product=ferredoxin--NADP reductase;protein_id=WP_075242284.1;transl_table=11 NZ_CP086200.1 RefSeq gene 368340 369341 . - . ID=gene-LLC55_RS01730;Name=dmeF;gbkey=Gene;gene=dmeF;gene_biotype=protein_coding;locus_tag=LLC55_RS01730;old_locus_tag=LLC55_01730 NZ_CP086200.1 Protein Homology CDS 368340 369341 . - 0 ID=cds-WP_011407379.1;Parent=gene-LLC55_RS01730;Dbxref=Genbank:WP_011407379.1;Name=WP_011407379.1;Ontology_term=GO:0006812,GO:0055085,GO:0008324,GO:0016020;gbkey=CDS;gene=dmeF;go_component=membrane|0016020||IEA;go_function=cation transmembrane transporter activity|0008324||IEA;go_process=cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162807.1;locus_tag=LLC55_RS01730;product=CDF family Co(II)/Ni(II) efflux transporter DmeF;protein_id=WP_011407379.1;transl_table=11 NZ_CP086200.1 RefSeq gene 369407 369679 . + . ID=gene-LLC55_RS01735;Name=LLC55_RS01735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01735;old_locus_tag=LLC55_01735 NZ_CP086200.1 Protein Homology CDS 369407 369679 . + 0 ID=cds-WP_011407380.1;Parent=gene-LLC55_RS01735;Dbxref=Genbank:WP_011407380.1;Name=WP_011407380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487297.1;locus_tag=LLC55_RS01735;product=metal/formaldehyde-sensitive transcriptional repressor;protein_id=WP_011407380.1;transl_table=11 NZ_CP086200.1 RefSeq gene 369800 369961 . + . ID=gene-LLC55_RS01740;Name=LLC55_RS01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01740;old_locus_tag=LLC55_01740 NZ_CP086200.1 GeneMarkS-2+ CDS 369800 369961 . + 0 ID=cds-WP_153296754.1;Parent=gene-LLC55_RS01740;Dbxref=Genbank:WP_153296754.1;Name=WP_153296754.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS01740;product=hypothetical protein;protein_id=WP_153296754.1;transl_table=11 NZ_CP086200.1 RefSeq gene 370165 370752 . + . ID=gene-LLC55_RS01745;Name=LLC55_RS01745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01745;old_locus_tag=LLC55_01745 NZ_CP086200.1 Protein Homology CDS 370165 370752 . + 0 ID=cds-WP_042465424.1;Parent=gene-LLC55_RS01745;Dbxref=Genbank:WP_042465424.1;Name=WP_042465424.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156281.1;locus_tag=LLC55_RS01745;product=hypothetical protein;protein_id=WP_042465424.1;transl_table=11 NZ_CP086200.1 RefSeq gene 370749 370949 . + . ID=gene-LLC55_RS01750;Name=LLC55_RS01750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01750;old_locus_tag=LLC55_01750 NZ_CP086200.1 Protein Homology CDS 370749 370949 . + 0 ID=cds-WP_011257320.1;Parent=gene-LLC55_RS01750;Dbxref=Genbank:WP_011257320.1;Name=WP_011257320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903655.1;locus_tag=LLC55_RS01750;product=helix-turn-helix transcriptional regulator;protein_id=WP_011257320.1;transl_table=11 NZ_CP086200.1 RefSeq gene 371010 372611 . + . ID=gene-LLC55_RS01755;Name=LLC55_RS01755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01755;old_locus_tag=LLC55_01755 NZ_CP086200.1 Protein Homology CDS 371010 372611 . + 0 ID=cds-WP_011407383.1;Parent=gene-LLC55_RS01755;Dbxref=Genbank:WP_011407383.1;Name=WP_011407383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849961.1;locus_tag=LLC55_RS01755;product=alpha/beta hydrolase;protein_id=WP_011407383.1;transl_table=11 NZ_CP086200.1 RefSeq gene 372643 373389 . + . ID=gene-LLC55_RS01760;Name=LLC55_RS01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01760;old_locus_tag=LLC55_01760 NZ_CP086200.1 Protein Homology CDS 372643 373389 . + 0 ID=cds-WP_024712051.1;Parent=gene-LLC55_RS01760;Dbxref=Genbank:WP_024712051.1;Name=WP_024712051.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039041.1;locus_tag=LLC55_RS01760;product=ATP-binding cassette domain-containing protein;protein_id=WP_024712051.1;transl_table=11 NZ_CP086200.1 RefSeq gene 373386 374579 . + . ID=gene-LLC55_RS01765;Name=LLC55_RS01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01765;old_locus_tag=LLC55_01765 NZ_CP086200.1 Protein Homology CDS 373386 374579 . + 0 ID=cds-WP_011407385.1;Parent=gene-LLC55_RS01765;Dbxref=Genbank:WP_011407385.1;Name=WP_011407385.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168416.1;locus_tag=LLC55_RS01765;product=ABC transporter permease;protein_id=WP_011407385.1;transl_table=11 NZ_CP086200.1 RefSeq gene 374989 376011 . - . ID=gene-LLC55_RS01770;Name=LLC55_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01770;old_locus_tag=LLC55_01770 NZ_CP086200.1 Protein Homology CDS 374989 376011 . - 0 ID=cds-WP_011407386.1;Parent=gene-LLC55_RS01770;Dbxref=Genbank:WP_011407386.1;Name=WP_011407386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156276.1;locus_tag=LLC55_RS01770;product=energy transducer TonB;protein_id=WP_011407386.1;transl_table=11 NZ_CP086200.1 RefSeq gene 376151 377716 . - . ID=gene-LLC55_RS01775;Name=LLC55_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01775;old_locus_tag=LLC55_01775 NZ_CP086200.1 Protein Homology CDS 376151 377716 . - 0 ID=cds-WP_041181930.1;Parent=gene-LLC55_RS01775;Dbxref=Genbank:WP_041181930.1;Name=WP_041181930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965065.1;locus_tag=LLC55_RS01775;product=tryptophan 7-halogenase;protein_id=WP_041181930.1;transl_table=11 NZ_CP086200.1 RefSeq gene 377727 378740 . - . ID=gene-LLC55_RS01780;Name=LLC55_RS01780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01780;old_locus_tag=LLC55_01780 NZ_CP086200.1 Protein Homology CDS 377727 378740 . - 0 ID=cds-WP_011257326.1;Parent=gene-LLC55_RS01780;Dbxref=Genbank:WP_011257326.1;Name=WP_011257326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156274.1;locus_tag=LLC55_RS01780;product=cupin-like domain-containing protein;protein_id=WP_011257326.1;transl_table=11 NZ_CP086200.1 RefSeq gene 378730 379431 . - . ID=gene-LLC55_RS01785;Name=LLC55_RS01785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01785;old_locus_tag=LLC55_01785 NZ_CP086200.1 Protein Homology CDS 378730 379431 . - 0 ID=cds-WP_011407388.1;Parent=gene-LLC55_RS01785;Dbxref=Genbank:WP_011407388.1;Name=WP_011407388.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407388.1;locus_tag=LLC55_RS01785;product=SapC family protein;protein_id=WP_011407388.1;transl_table=11 NZ_CP086200.1 RefSeq gene 379615 382629 . - . ID=gene-LLC55_RS01790;Name=LLC55_RS01790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01790;old_locus_tag=LLC55_01790 NZ_CP086200.1 Protein Homology CDS 379615 382629 . - 0 ID=cds-WP_011407389.1;Parent=gene-LLC55_RS01790;Dbxref=Genbank:WP_011407389.1;Name=WP_011407389.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158727.1;locus_tag=LLC55_RS01790;product=TonB-dependent receptor;protein_id=WP_011407389.1;transl_table=11 NZ_CP086200.1 RefSeq gene 383019 383708 . + . ID=gene-LLC55_RS01795;Name=LLC55_RS01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01795;old_locus_tag=LLC55_01795 NZ_CP086200.1 Protein Homology CDS 383019 383708 . + 0 ID=cds-WP_011257330.1;Parent=gene-LLC55_RS01795;Dbxref=Genbank:WP_011257330.1;Name=WP_011257330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804208.1;locus_tag=LLC55_RS01795;product=glutathione binding-like protein;protein_id=WP_011257330.1;transl_table=11 NZ_CP086200.1 RefSeq gene 384133 386370 . + . ID=gene-LLC55_RS01800;Name=LLC55_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01800;old_locus_tag=LLC55_01800 NZ_CP086200.1 Protein Homology CDS 384133 386370 . + 0 ID=cds-WP_069959690.1;Parent=gene-LLC55_RS01800;Dbxref=Genbank:WP_069959690.1;Name=WP_069959690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257331.1;locus_tag=LLC55_RS01800;product=S9 family peptidase;protein_id=WP_069959690.1;transl_table=11 NZ_CP086200.1 RefSeq gene 386375 386451 . - . ID=gene-LLC55_RS01805;Name=LLC55_RS01805;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS01805;old_locus_tag=LLC55_01805 NZ_CP086200.1 cmsearch ncRNA 386375 386451 . - . ID=rna-LLC55_RS01805;Parent=gene-LLC55_RS01805;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01805;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 386375 386451 . - . ID=exon-LLC55_RS01805-1;Parent=rna-LLC55_RS01805;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01805;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 386579 388369 . + . ID=gene-LLC55_RS01810;Name=LLC55_RS01810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01810;old_locus_tag=LLC55_01810 NZ_CP086200.1 Protein Homology CDS 386579 388369 . + 0 ID=cds-WP_069959691.1;Parent=gene-LLC55_RS01810;Dbxref=Genbank:WP_069959691.1;Name=WP_069959691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158571.1;locus_tag=LLC55_RS01810;product=DUF885 domain-containing protein;protein_id=WP_069959691.1;transl_table=11 NZ_CP086200.1 RefSeq gene 388469 388927 . - . ID=gene-LLC55_RS01815;Name=LLC55_RS01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01815;old_locus_tag=LLC55_01815 NZ_CP086200.1 Protein Homology CDS 388469 388927 . - 0 ID=cds-WP_069959692.1;Parent=gene-LLC55_RS01815;Dbxref=Genbank:WP_069959692.1;Name=WP_069959692.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171777.1;locus_tag=LLC55_RS01815;product=hypothetical protein;protein_id=WP_069959692.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 389129 389368 . + . ID=gene-LLC55_RS01820;Name=LLC55_RS01820;end_range=389368,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01820;old_locus_tag=LLC55_01820;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 389129 389368 . + 0 ID=cds-LLC55_RS01820;Parent=gene-LLC55_RS01820;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=389368,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916515.1;locus_tag=LLC55_RS01820;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 389592 390584 . + . ID=gene-LLC55_RS01825;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=LLC55_RS01825;old_locus_tag=LLC55_01825 NZ_CP086200.1 Protein Homology CDS 389592 390584 . + 0 ID=cds-WP_011257334.1;Parent=gene-LLC55_RS01825;Dbxref=Genbank:WP_011257334.1;Name=WP_011257334.1;Ontology_term=GO:0033014,GO:0003824,GO:0004655,GO:0046872;gbkey=CDS;gene=hemB;go_function=catalytic activity|0003824||IEA,porphobilinogen synthase activity|0004655||IEA,metal ion binding|0046872||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303747.1;locus_tag=LLC55_RS01825;product=porphobilinogen synthase;protein_id=WP_011257334.1;transl_table=11 NZ_CP086200.1 RefSeq gene 390629 390705 . - . ID=gene-LLC55_RS01830;Name=LLC55_RS01830;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS01830;old_locus_tag=LLC55_01830 NZ_CP086200.1 cmsearch ncRNA 390629 390705 . - . ID=rna-LLC55_RS01830;Parent=gene-LLC55_RS01830;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01830;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 390629 390705 . - . ID=exon-LLC55_RS01830-1;Parent=rna-LLC55_RS01830;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01830;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 390772 391764 . - . ID=gene-LLC55_RS01835;Name=LLC55_RS01835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01835;old_locus_tag=LLC55_01835;pseudo=true NZ_CP086200.1 Protein Homology CDS 390772 391764 . - 0 ID=cds-LLC55_RS01835;Parent=gene-LLC55_RS01835;Note=internal stop;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117813.1;locus_tag=LLC55_RS01835;product=NAD-dependent epimerase/dehydratase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 391857 392771 . + . ID=gene-LLC55_RS01840;Name=LLC55_RS01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01840;old_locus_tag=LLC55_01840 NZ_CP086200.1 Protein Homology CDS 391857 392771 . + 0 ID=cds-WP_011407394.1;Parent=gene-LLC55_RS01840;Dbxref=Genbank:WP_011407394.1;Name=WP_011407394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369930.1;locus_tag=LLC55_RS01840;product=LysR family transcriptional regulator;protein_id=WP_011407394.1;transl_table=11 NZ_CP086200.1 RefSeq gene 392899 393651 . - . ID=gene-LLC55_RS01845;Name=LLC55_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01845;old_locus_tag=LLC55_01845 NZ_CP086200.1 Protein Homology CDS 392899 393651 . - 0 ID=cds-WP_011407395.1;Parent=gene-LLC55_RS01845;Dbxref=Genbank:WP_011407395.1;Name=WP_011407395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407395.1;locus_tag=LLC55_RS01845;product=DNA/RNA non-specific endonuclease;protein_id=WP_011407395.1;transl_table=11 NZ_CP086200.1 RefSeq gene 393885 396419 . + . ID=gene-LLC55_RS01850;Name=LLC55_RS01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01850;old_locus_tag=LLC55_01850 NZ_CP086200.1 Protein Homology CDS 393885 396419 . + 0 ID=cds-WP_011257339.1;Parent=gene-LLC55_RS01850;Dbxref=Genbank:WP_011257339.1;Name=WP_011257339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916508.1;locus_tag=LLC55_RS01850;product=sulfite reductase flavoprotein subunit alpha;protein_id=WP_011257339.1;transl_table=11 NZ_CP086200.1 RefSeq gene 396528 396604 . + . ID=gene-LLC55_RS01855;Name=LLC55_RS01855;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS01855;old_locus_tag=LLC55_01855 NZ_CP086200.1 cmsearch ncRNA 396528 396604 . + . ID=rna-LLC55_RS01855;Parent=gene-LLC55_RS01855;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01855;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 396528 396604 . + . ID=exon-LLC55_RS01855-1;Parent=rna-LLC55_RS01855;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS01855;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 397042 397923 . - . ID=gene-LLC55_RS01860;Name=LLC55_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01860;old_locus_tag=LLC55_01860 NZ_CP086200.1 Protein Homology CDS 397042 397923 . - 0 ID=cds-WP_041181934.1;Parent=gene-LLC55_RS01860;Dbxref=Genbank:WP_041181934.1;Name=WP_041181934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156261.1;locus_tag=LLC55_RS01860;product=PD40 domain-containing protein;protein_id=WP_041181934.1;transl_table=11 NZ_CP086200.1 RefSeq gene 397976 398827 . + . ID=gene-LLC55_RS01865;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=LLC55_RS01865;old_locus_tag=LLC55_01865 NZ_CP086200.1 Protein Homology CDS 397976 398827 . + 0 ID=cds-WP_011257342.1;Parent=gene-LLC55_RS01865;Dbxref=Genbank:WP_011257342.1;Name=WP_011257342.1;Ontology_term=GO:0019632,GO:0004764;gbkey=CDS;gene=aroE;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;go_process=shikimate metabolic process|0019632||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257342.1;locus_tag=LLC55_RS01865;product=shikimate dehydrogenase;protein_id=WP_011257342.1;transl_table=11 NZ_CP086200.1 RefSeq gene 398817 399215 . + . ID=gene-LLC55_RS01870;Name=LLC55_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01870;old_locus_tag=LLC55_01870 NZ_CP086200.1 Protein Homology CDS 398817 399215 . + 0 ID=cds-WP_011257343.1;Parent=gene-LLC55_RS01870;Dbxref=Genbank:WP_011257343.1;Name=WP_011257343.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505055.1;locus_tag=LLC55_RS01870;product=hypothetical protein;protein_id=WP_011257343.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 399191 399399 . + . ID=gene-LLC55_RS01875;Name=LLC55_RS01875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01875;old_locus_tag=LLC55_01875;pseudo=true NZ_CP086200.1 Protein Homology CDS 399191 399399 . + 0 ID=cds-LLC55_RS01875;Parent=gene-LLC55_RS01875;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156258.1;locus_tag=LLC55_RS01875;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 399677 401809 . + . ID=gene-LLC55_RS01880;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;locus_tag=LLC55_RS01880;old_locus_tag=LLC55_01880 NZ_CP086200.1 Protein Homology CDS 399677 401809 . + 0 ID=cds-WP_011257345.1;Parent=gene-LLC55_RS01880;Dbxref=Genbank:WP_011257345.1;Name=WP_011257345.1;Ontology_term=GO:0006139,GO:0003677,GO:0003678,GO:0005524,GO:0016818;gbkey=CDS;gene=dinG;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505052.1;locus_tag=LLC55_RS01880;product=ATP-dependent DNA helicase DinG;protein_id=WP_011257345.1;transl_table=11 NZ_CP086200.1 RefSeq gene 402017 402349 . + . ID=gene-LLC55_RS01885;Name=LLC55_RS01885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01885;old_locus_tag=LLC55_01885 NZ_CP086200.1 Protein Homology CDS 402017 402349 . + 0 ID=cds-WP_011257346.1;Parent=gene-LLC55_RS01885;Dbxref=Genbank:WP_011257346.1;Name=WP_011257346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407399.1;locus_tag=LLC55_RS01885;product=hypothetical protein;protein_id=WP_011257346.1;transl_table=11 NZ_CP086200.1 RefSeq gene 402432 403397 . + . ID=gene-LLC55_RS01890;Name=LLC55_RS01890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01890;old_locus_tag=LLC55_01890 NZ_CP086200.1 Protein Homology CDS 402432 403397 . + 0 ID=cds-WP_109182029.1;Parent=gene-LLC55_RS01890;Dbxref=Genbank:WP_109182029.1;Name=WP_109182029.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS01890;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182029.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 403833 403928 . + . ID=gene-LLC55_RS23420;Name=LLC55_RS23420;end_range=403928,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23420;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 403833 403928 . + 0 ID=cds-LLC55_RS23420;Parent=gene-LLC55_RS23420;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=403928,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024829.2;locus_tag=LLC55_RS23420;partial=true;product=hemolysin D;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 403937 404158 . + . ID=gene-LLC55_RS23425;Name=LLC55_RS23425;end_range=404158,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23425;partial=true;pseudo=true;start_range=.,403937 NZ_CP086200.1 Protein Homology CDS 403937 404158 . + 0 ID=cds-LLC55_RS23425;Parent=gene-LLC55_RS23425;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=404158,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154917.1;locus_tag=LLC55_RS23425;partial=true;product=hypothetical protein;pseudo=true;start_range=.,403937;transl_table=11 NZ_CP086200.1 RefSeq gene 404739 406244 . + . ID=gene-LLC55_RS01900;Name=katB;gbkey=Gene;gene=katB;gene_biotype=protein_coding;locus_tag=LLC55_RS01900;old_locus_tag=LLC55_01900 NZ_CP086200.1 Protein Homology CDS 404739 406244 . + 0 ID=cds-WP_027704120.1;Parent=gene-LLC55_RS01900;Dbxref=Genbank:WP_027704120.1;Name=WP_027704120.1;gbkey=CDS;gene=katB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902786.1;locus_tag=LLC55_RS01900;product=catalase KatB;protein_id=WP_027704120.1;transl_table=11 NZ_CP086200.1 RefSeq gene 406303 406878 . + . ID=gene-LLC55_RS01905;Name=LLC55_RS01905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01905;old_locus_tag=LLC55_01905 NZ_CP086200.1 Protein Homology CDS 406303 406878 . + 0 ID=cds-WP_011257351.1;Parent=gene-LLC55_RS01905;Dbxref=Genbank:WP_011257351.1;Name=WP_011257351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374921.1;locus_tag=LLC55_RS01905;product=ankyrin repeat domain-containing protein;protein_id=WP_011257351.1;transl_table=11 NZ_CP086200.1 RefSeq gene 407163 407348 . - . ID=gene-LLC55_RS01910;Name=LLC55_RS01910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01910;old_locus_tag=LLC55_01910 NZ_CP086200.1 GeneMarkS-2+ CDS 407163 407348 . - 0 ID=cds-WP_113160272.1;Parent=gene-LLC55_RS01910;Dbxref=Genbank:WP_113160272.1;Name=WP_113160272.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS01910;product=hypothetical protein;protein_id=WP_113160272.1;transl_table=11 NZ_CP086200.1 RefSeq gene 407599 407823 . + . ID=gene-LLC55_RS01915;Name=LLC55_RS01915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01915;old_locus_tag=LLC55_01915 NZ_CP086200.1 Protein Homology CDS 407599 407823 . + 0 ID=cds-WP_012446316.1;Parent=gene-LLC55_RS01915;Dbxref=Genbank:WP_012446316.1;Name=WP_012446316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154914.1;locus_tag=LLC55_RS01915;product=hypothetical protein;protein_id=WP_012446316.1;transl_table=11 NZ_CP086200.1 RefSeq gene 408286 409290 . + . ID=gene-LLC55_RS01920;Name=dusA;gbkey=Gene;gene=dusA;gene_biotype=protein_coding;locus_tag=LLC55_RS01920;old_locus_tag=LLC55_01920 NZ_CP086200.1 Protein Homology CDS 408286 409290 . + 0 ID=cds-WP_011257354.1;Parent=gene-LLC55_RS01920;Dbxref=Genbank:WP_011257354.1;Name=WP_011257354.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusA;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916500.1;locus_tag=LLC55_RS01920;product=tRNA dihydrouridine(20/20a) synthase DusA;protein_id=WP_011257354.1;transl_table=11 NZ_CP086200.1 RefSeq gene 409627 409929 . + . ID=gene-LLC55_RS01925;Name=LLC55_RS01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01925;old_locus_tag=LLC55_01925 NZ_CP086200.1 Protein Homology CDS 409627 409929 . + 0 ID=cds-WP_033013584.1;Parent=gene-LLC55_RS01925;Dbxref=Genbank:WP_033013584.1;Name=WP_033013584.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446315.1;locus_tag=LLC55_RS01925;product=hypothetical protein;protein_id=WP_033013584.1;transl_table=11 NZ_CP086200.1 RefSeq gene 410001 410684 . + . ID=gene-LLC55_RS01930;Name=LLC55_RS01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01930;old_locus_tag=LLC55_01930 NZ_CP086200.1 Protein Homology CDS 410001 410684 . + 0 ID=cds-WP_002808458.1;Parent=gene-LLC55_RS01930;Dbxref=Genbank:WP_002808458.1;Name=WP_002808458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017917079.1;locus_tag=LLC55_RS01930;product=response regulator transcription factor;protein_id=WP_002808458.1;transl_table=11 NZ_CP086200.1 RefSeq gene 410759 412129 . + . ID=gene-LLC55_RS01935;Name=LLC55_RS01935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01935;old_locus_tag=LLC55_01935 NZ_CP086200.1 Protein Homology CDS 410759 412129 . + 0 ID=cds-WP_012446314.1;Parent=gene-LLC55_RS01935;Dbxref=Genbank:WP_012446314.1;Name=WP_012446314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171995.1;locus_tag=LLC55_RS01935;product=ATP-binding protein;protein_id=WP_012446314.1;transl_table=11 NZ_CP086200.1 RefSeq gene 412250 413839 . + . ID=gene-LLC55_RS01940;Name=LLC55_RS01940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01940;old_locus_tag=LLC55_01940 NZ_CP086200.1 Protein Homology CDS 412250 413839 . + 0 ID=cds-WP_012446313.1;Parent=gene-LLC55_RS01940;Dbxref=Genbank:WP_012446313.1;Name=WP_012446313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154911.1;locus_tag=LLC55_RS01940;product=DUF1800 domain-containing protein;protein_id=WP_012446313.1;transl_table=11 NZ_CP086200.1 RefSeq gene 413959 415143 . + . ID=gene-LLC55_RS01945;Name=LLC55_RS01945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01945;old_locus_tag=LLC55_01945 NZ_CP086200.1 Protein Homology CDS 413959 415143 . + 0 ID=cds-WP_027704119.1;Parent=gene-LLC55_RS01945;Dbxref=Genbank:WP_027704119.1;Name=WP_027704119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304202.1;locus_tag=LLC55_RS01945;product=DUF1501 domain-containing protein;protein_id=WP_027704119.1;transl_table=11 NZ_CP086200.1 RefSeq gene 415296 416039 . - . ID=gene-LLC55_RS01950;Name=LLC55_RS01950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01950;old_locus_tag=LLC55_01950 NZ_CP086200.1 Protein Homology CDS 415296 416039 . - 0 ID=cds-WP_075239894.1;Parent=gene-LLC55_RS01950;Dbxref=Genbank:WP_075239894.1;Name=WP_075239894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576450.1;locus_tag=LLC55_RS01950;product=zinc-dependent peptidase;protein_id=WP_075239894.1;transl_table=11 NZ_CP086200.1 RefSeq gene 416060 416371 . - . ID=gene-LLC55_RS01955;Name=LLC55_RS01955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01955;old_locus_tag=LLC55_01955 NZ_CP086200.1 Protein Homology CDS 416060 416371 . - 0 ID=cds-WP_012446311.1;Parent=gene-LLC55_RS01955;Dbxref=Genbank:WP_012446311.1;Name=WP_012446311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154908.1;locus_tag=LLC55_RS01955;product=hypothetical protein;protein_id=WP_012446311.1;transl_table=11 NZ_CP086200.1 RefSeq gene 416678 417694 . + . ID=gene-LLC55_RS01960;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=LLC55_RS01960;old_locus_tag=LLC55_01960 NZ_CP086200.1 Protein Homology CDS 416678 417694 . + 0 ID=cds-WP_012446310.1;Parent=gene-LLC55_RS01960;Dbxref=Genbank:WP_012446310.1;Name=WP_012446310.1;Ontology_term=GO:0006355,GO:0036211,GO:0004077;gbkey=CDS;gene=birA;go_function=biotin-[acetyl-CoA-carboxylase] ligase activity|0004077||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505037.1;locus_tag=LLC55_RS01960;product=bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;protein_id=WP_012446310.1;transl_table=11 NZ_CP086200.1 RefSeq gene 417691 418419 . + . ID=gene-LLC55_RS01965;Name=LLC55_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01965;old_locus_tag=LLC55_01965 NZ_CP086200.1 Protein Homology CDS 417691 418419 . + 0 ID=cds-WP_011257361.1;Parent=gene-LLC55_RS01965;Dbxref=Genbank:WP_011257361.1;Name=WP_011257361.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154906.1;locus_tag=LLC55_RS01965;product=type III pantothenate kinase;protein_id=WP_011257361.1;transl_table=11 NZ_CP086200.1 RefSeq gene 418429 419349 . + . ID=gene-LLC55_RS01970;Name=LLC55_RS01970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS01970;old_locus_tag=LLC55_01970 NZ_CP086200.1 Protein Homology CDS 418429 419349 . + 0 ID=cds-WP_011407408.1;Parent=gene-LLC55_RS01970;Dbxref=Genbank:WP_011407408.1;Name=WP_011407408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112291.1;locus_tag=LLC55_RS01970;product=SPOR domain-containing protein;protein_id=WP_011407408.1;transl_table=11 NZ_CP086200.1 RefSeq gene 419382 419457 . + . ID=gene-LLC55_RS01975;Name=LLC55_RS01975;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS01975;old_locus_tag=LLC55_01975 NZ_CP086200.1 tRNAscan-SE tRNA 419382 419457 . + . ID=rna-LLC55_RS01975;Parent=gene-LLC55_RS01975;anticodon=(pos:419415..419417);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS01975;product=tRNA-Thr NZ_CP086200.1 tRNAscan-SE exon 419382 419457 . + . ID=exon-LLC55_RS01975-1;Parent=rna-LLC55_RS01975;anticodon=(pos:419415..419417);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS01975;product=tRNA-Thr NZ_CP086200.1 RefSeq gene 420158 420841 . - . ID=gene-LLC55_RS01980;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=LLC55_RS01980;old_locus_tag=LLC55_01980 NZ_CP086200.1 Protein Homology CDS 420158 420841 . - 0 ID=cds-WP_011257363.1;Parent=gene-LLC55_RS01980;Dbxref=Genbank:WP_011257363.1;Name=WP_011257363.1;Ontology_term=GO:0015949,GO:0004798;gbkey=CDS;gene=tmk;go_function=thymidylate kinase activity|0004798||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486617.1;locus_tag=LLC55_RS01980;product=dTMP kinase;protein_id=WP_011257363.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 421321 421863 . - . ID=gene-LLC55_RS01985;Name=LLC55_RS01985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01985;old_locus_tag=LLC55_01985;pseudo=true NZ_CP086200.1 Protein Homology CDS 421321 421863 . - 0 ID=cds-LLC55_RS01985;Parent=gene-LLC55_RS01985;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159094.1;locus_tag=LLC55_RS01985;product=GTPase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 421860 422315 . - . ID=gene-LLC55_RS01990;Name=LLC55_RS01990;end_range=422315,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01990;old_locus_tag=LLC55_01990;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 421860 422315 . - 0 ID=cds-LLC55_RS01990;Parent=gene-LLC55_RS01990;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=422315,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374883.1;locus_tag=LLC55_RS01990;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 422307 422525 . - . ID=gene-LLC55_RS01995;Name=LLC55_RS01995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS01995;old_locus_tag=LLC55_01995;partial=true;pseudo=true;start_range=.,422307 NZ_CP086200.1 Protein Homology CDS 422307 422525 . - 0 ID=cds-LLC55_RS01995;Parent=gene-LLC55_RS01995;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158238.1;locus_tag=LLC55_RS01995;partial=true;product=hypothetical protein;pseudo=true;start_range=.,422307;transl_table=11 NZ_CP086200.1 RefSeq gene 422847 423770 . + . ID=gene-LLC55_RS02000;Name=rocF;gbkey=Gene;gene=rocF;gene_biotype=protein_coding;locus_tag=LLC55_RS02000;old_locus_tag=LLC55_02000 NZ_CP086200.1 Protein Homology CDS 422847 423770 . + 0 ID=cds-WP_011407409.1;Parent=gene-LLC55_RS02000;Dbxref=Genbank:WP_011407409.1;Name=WP_011407409.1;Ontology_term=GO:0019547,GO:0004053;gbkey=CDS;gene=rocF;go_function=arginase activity|0004053||IEA;go_process=arginine catabolic process to ornithine|0019547||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989327.1;locus_tag=LLC55_RS02000;product=arginase;protein_id=WP_011407409.1;transl_table=11 NZ_CP086200.1 RefSeq gene 423878 424030 . + . ID=gene-LLC55_RS02005;Name=LLC55_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02005;old_locus_tag=LLC55_02005 NZ_CP086200.1 Protein Homology CDS 423878 424030 . + 0 ID=cds-WP_011407410.1;Parent=gene-LLC55_RS02005;Dbxref=Genbank:WP_011407410.1;Name=WP_011407410.1;Ontology_term=GO:0009636,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=response to toxic substance|0009636||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374875.1;locus_tag=LLC55_RS02005;product=entericidin A/B family lipoprotein;protein_id=WP_011407410.1;transl_table=11 NZ_CP086200.1 RefSeq gene 424094 424228 . + . ID=gene-LLC55_RS02010;Name=LLC55_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02010;old_locus_tag=LLC55_02010 NZ_CP086200.1 Protein Homology CDS 424094 424228 . + 0 ID=cds-WP_011257368.1;Parent=gene-LLC55_RS02010;Dbxref=Genbank:WP_011257368.1;Name=WP_011257368.1;Ontology_term=GO:0009636,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=response to toxic substance|0009636||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904515.1;locus_tag=LLC55_RS02010;product=entericidin A/B family lipoprotein;protein_id=WP_011257368.1;transl_table=11 NZ_CP086200.1 RefSeq gene 424469 424678 . + . ID=gene-LLC55_RS02015;Name=LLC55_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02015;old_locus_tag=LLC55_02015 NZ_CP086200.1 Protein Homology CDS 424469 424678 . + 0 ID=cds-WP_011407411.1;Parent=gene-LLC55_RS02015;Dbxref=Genbank:WP_011407411.1;Name=WP_011407411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486601.1;locus_tag=LLC55_RS02015;product=CsbD family protein;protein_id=WP_011407411.1;transl_table=11 NZ_CP086200.1 RefSeq gene 424847 426136 . + . ID=gene-LLC55_RS02020;Name=LLC55_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02020;old_locus_tag=LLC55_02020 NZ_CP086200.1 Protein Homology CDS 424847 426136 . + 0 ID=cds-WP_075242213.1;Parent=gene-LLC55_RS02020;Dbxref=Genbank:WP_075242213.1;Name=WP_075242213.1;Ontology_term=GO:0006436,GO:0004830;gbkey=CDS;go_function=tryptophan-tRNA ligase activity|0004830||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966942.1;locus_tag=LLC55_RS02020;product=tryptophan--tRNA ligase;protein_id=WP_075242213.1;transl_table=11 NZ_CP086200.1 RefSeq gene 426267 427211 . + . ID=gene-LLC55_RS02025;Name=LLC55_RS02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02025;old_locus_tag=LLC55_02025 NZ_CP086200.1 Protein Homology CDS 426267 427211 . + 0 ID=cds-WP_027704118.1;Parent=gene-LLC55_RS02025;Dbxref=Genbank:WP_027704118.1;Name=WP_027704118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505028.1;locus_tag=LLC55_RS02025;product=MBL fold metallo-hydrolase;protein_id=WP_027704118.1;transl_table=11 NZ_CP086200.1 RefSeq gene 427674 429326 . + . ID=gene-LLC55_RS02030;Name=LLC55_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02030;old_locus_tag=LLC55_02030 NZ_CP086200.1 Protein Homology CDS 427674 429326 . + 0 ID=cds-WP_027704117.1;Parent=gene-LLC55_RS02030;Dbxref=Genbank:WP_027704117.1;Name=WP_027704117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486594.1;locus_tag=LLC55_RS02030;product=M28 family metallopeptidase;protein_id=WP_027704117.1;transl_table=11 NZ_CP086200.1 RefSeq gene 429331 429407 . - . ID=gene-LLC55_RS02035;Name=LLC55_RS02035;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS02035;old_locus_tag=LLC55_02035 NZ_CP086200.1 cmsearch ncRNA 429331 429407 . - . ID=rna-LLC55_RS02035;Parent=gene-LLC55_RS02035;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02035;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 429331 429407 . - . ID=exon-LLC55_RS02035-1;Parent=rna-LLC55_RS02035;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02035;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 429827 430279 . - . ID=gene-LLC55_RS02040;Name=LLC55_RS02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02040;old_locus_tag=LLC55_02040 NZ_CP086200.1 Protein Homology CDS 429827 430279 . - 0 ID=cds-WP_069959697.1;Parent=gene-LLC55_RS02040;Dbxref=Genbank:WP_069959697.1;Name=WP_069959697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304468.1;locus_tag=LLC55_RS02040;product=Rap1a/Tai family immunity protein;protein_id=WP_069959697.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 430324 431246 . + . ID=gene-LLC55_RS02045;Name=yedA;gbkey=Gene;gene=yedA;gene_biotype=pseudogene;locus_tag=LLC55_RS02045;old_locus_tag=LLC55_02045;pseudo=true NZ_CP086200.1 Protein Homology CDS 430324 431246 . + 0 ID=cds-LLC55_RS02045;Parent=gene-LLC55_RS02045;Note=frameshifted;Ontology_term=GO:0016020;gbkey=CDS;gene=yedA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158230.1;locus_tag=LLC55_RS02045;product=drug/metabolite exporter YedA;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 431243 432151 . + . ID=gene-LLC55_RS02050;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=LLC55_RS02050;old_locus_tag=LLC55_02050 NZ_CP086200.1 Protein Homology CDS 431243 432151 . + 0 ID=cds-WP_011257375.1;Parent=gene-LLC55_RS02050;Dbxref=Genbank:WP_011257375.1;Name=WP_011257375.1;Ontology_term=GO:0006810,GO:0005215,GO:0005886;gbkey=CDS;gene=rarD;go_component=plasma membrane|0005886||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850770.1;locus_tag=LLC55_RS02050;product=EamA family transporter RarD;protein_id=WP_011257375.1;transl_table=11 NZ_CP086200.1 RefSeq gene 432231 433346 . - . ID=gene-LLC55_RS02055;Name=LLC55_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02055;old_locus_tag=LLC55_02055 NZ_CP086200.1 Protein Homology CDS 432231 433346 . - 0 ID=cds-WP_011407417.1;Parent=gene-LLC55_RS02055;Dbxref=Genbank:WP_011407417.1;Name=WP_011407417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158228.1;locus_tag=LLC55_RS02055;product=alpha/beta hydrolase;protein_id=WP_011407417.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 433573 433887 . - . ID=gene-LLC55_RS02060;Name=LLC55_RS02060;end_range=433887,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02060;old_locus_tag=LLC55_02060;partial=true;pseudo=true;start_range=.,433573 NZ_CP086200.1 Protein Homology CDS 433573 433887 . - 0 ID=cds-LLC55_RS02060;Parent=gene-LLC55_RS02060;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=433887,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_082322974.1;locus_tag=LLC55_RS02060;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,433573;transl_table=11 NZ_CP086200.1 RefSeq gene 434047 434580 . - . ID=gene-LLC55_RS02065;Name=LLC55_RS02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02065;old_locus_tag=LLC55_02065 NZ_CP086200.1 Protein Homology CDS 434047 434580 . - 0 ID=cds-WP_011257378.1;Parent=gene-LLC55_RS02065;Dbxref=Genbank:WP_011257378.1;Name=WP_011257378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305394.1;locus_tag=LLC55_RS02065;product=cytochrome b;protein_id=WP_011257378.1;transl_table=11 NZ_CP086200.1 RefSeq gene 434577 435668 . - . ID=gene-LLC55_RS02070;Name=LLC55_RS02070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02070;old_locus_tag=LLC55_02070 NZ_CP086200.1 Protein Homology CDS 434577 435668 . - 0 ID=cds-WP_011257379.1;Parent=gene-LLC55_RS02070;Dbxref=Genbank:WP_011257379.1;Name=WP_011257379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914346.1;locus_tag=LLC55_RS02070;product=catalase family peroxidase;protein_id=WP_011257379.1;transl_table=11 NZ_CP086200.1 RefSeq gene 435833 436348 . + . ID=gene-LLC55_RS02075;Name=LLC55_RS02075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02075;old_locus_tag=LLC55_02075 NZ_CP086200.1 Protein Homology CDS 435833 436348 . + 0 ID=cds-WP_011257380.1;Parent=gene-LLC55_RS02075;Dbxref=Genbank:WP_011257380.1;Name=WP_011257380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446300.1;locus_tag=LLC55_RS02075;product=RNA polymerase sigma factor;protein_id=WP_011257380.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 436345 437097 . + . ID=gene-LLC55_RS02080;Name=LLC55_RS02080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02080;old_locus_tag=LLC55_02080;pseudo=true NZ_CP086200.1 Protein Homology CDS 436345 437097 . + 0 ID=cds-LLC55_RS02080;Parent=gene-LLC55_RS02080;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914350.1;locus_tag=LLC55_RS02080;product=anti-sigma factor;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 437151 438521 . - . ID=gene-LLC55_RS02085;Name=LLC55_RS02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02085;old_locus_tag=LLC55_02085 NZ_CP086200.1 Protein Homology CDS 437151 438521 . - 0 ID=cds-WP_011257382.1;Parent=gene-LLC55_RS02085;Dbxref=Genbank:WP_011257382.1;Name=WP_011257382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989294.1;locus_tag=LLC55_RS02085;product=leucyl aminopeptidase family protein;protein_id=WP_011257382.1;transl_table=11 NZ_CP086200.1 RefSeq gene 438562 439299 . - . ID=gene-LLC55_RS02090;Name=LLC55_RS02090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02090;old_locus_tag=LLC55_02090 NZ_CP086200.1 Protein Homology CDS 438562 439299 . - 0 ID=cds-WP_011257383.1;Parent=gene-LLC55_RS02090;Dbxref=Genbank:WP_011257383.1;Name=WP_011257383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257383.1;locus_tag=LLC55_RS02090;product=HAD family hydrolase;protein_id=WP_011257383.1;transl_table=11 NZ_CP086200.1 RefSeq gene 439431 440537 . - . ID=gene-LLC55_RS02095;Name=LLC55_RS02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02095;old_locus_tag=LLC55_02095 NZ_CP086200.1 Protein Homology CDS 439431 440537 . - 0 ID=cds-WP_011407418.1;Parent=gene-LLC55_RS02095;Dbxref=Genbank:WP_011407418.1;Name=WP_011407418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809543.1;locus_tag=LLC55_RS02095;product=AI-2E family transporter;protein_id=WP_011407418.1;transl_table=11 NZ_CP086200.1 RefSeq gene 441142 441218 . - . ID=gene-LLC55_RS02100;Name=LLC55_RS02100;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS02100;old_locus_tag=LLC55_02100 NZ_CP086200.1 tRNAscan-SE tRNA 441142 441218 . - . ID=rna-LLC55_RS02100;Parent=gene-LLC55_RS02100;anticodon=(pos:complement(441182..441184));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS02100;product=tRNA-Arg NZ_CP086200.1 tRNAscan-SE exon 441142 441218 . - . ID=exon-LLC55_RS02100-1;Parent=rna-LLC55_RS02100;anticodon=(pos:complement(441182..441184));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS02100;product=tRNA-Arg NZ_CP086200.1 RefSeq gene 441673 442572 . + . ID=gene-LLC55_RS02105;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=LLC55_RS02105;old_locus_tag=LLC55_02105 NZ_CP086200.1 Protein Homology CDS 441673 442572 . + 0 ID=cds-WP_011257385.1;Parent=gene-LLC55_RS02105;Dbxref=Genbank:WP_011257385.1;Name=WP_011257385.1;Ontology_term=GO:0006744,GO:0008412;gbkey=CDS;gene=ubiA;go_function=4-hydroxybenzoate octaprenyltransferase activity|0008412||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050286.1;locus_tag=LLC55_RS02105;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_011257385.1;transl_table=11 NZ_CP086200.1 RefSeq gene 442828 443553 . - . ID=gene-LLC55_RS02110;Name=LLC55_RS02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02110;old_locus_tag=LLC55_02110 NZ_CP086200.1 Protein Homology CDS 442828 443553 . - 0 ID=cds-WP_042465430.1;Parent=gene-LLC55_RS02110;Dbxref=Genbank:WP_042465430.1;Name=WP_042465430.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115760.1;locus_tag=LLC55_RS02110;product=ComF family protein;protein_id=WP_042465430.1;transl_table=11 NZ_CP086200.1 RefSeq gene 443603 444637 . + . ID=gene-LLC55_RS02115;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=LLC55_RS02115;old_locus_tag=LLC55_02115 NZ_CP086200.1 Protein Homology CDS 443603 444637 . + 0 ID=cds-WP_011257387.1;Parent=gene-LLC55_RS02115;Dbxref=Genbank:WP_011257387.1;Name=WP_011257387.1;Ontology_term=GO:0009102,GO:0004076,GO:0051537,GO:0051539,GO:1904047;gbkey=CDS;gene=bioB;go_function=biotin synthase activity|0004076||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368929.1;locus_tag=LLC55_RS02115;product=biotin synthase BioB;protein_id=WP_011257387.1;transl_table=11 NZ_CP086200.1 RefSeq gene 444561 445934 . + . ID=gene-LLC55_RS02120;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=LLC55_RS02120;old_locus_tag=LLC55_02120 NZ_CP086200.1 Protein Homology CDS 444561 445934 . + 0 ID=cds-WP_027704113.1;Parent=gene-LLC55_RS02120;Dbxref=Genbank:WP_027704113.1;Name=WP_027704113.1;Ontology_term=GO:0009102,GO:0008710;gbkey=CDS;gene=bioF;go_function=8-amino-7-oxononanoate synthase activity|0008710||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158481.1;locus_tag=LLC55_RS02120;product=8-amino-7-oxononanoate synthase;protein_id=WP_027704113.1;transl_table=11 NZ_CP086200.1 RefSeq gene 446359 447418 . + . ID=gene-LLC55_RS02125;Name=LLC55_RS02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02125;old_locus_tag=LLC55_02125 NZ_CP086200.1 Protein Homology CDS 446359 447249 . + 0 ID=cds-WP_113336210.1;Parent=gene-LLC55_RS02125;Dbxref=Genbank:WP_113336210.1;Name=WP_113336210.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408472.1;locus_tag=LLC55_RS02125;product=IS630 family transposase;protein_id=WP_113336210.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 447251 447418 . + 0 ID=cds-WP_113336210.1;Parent=gene-LLC55_RS02125;Dbxref=Genbank:WP_113336210.1;Name=WP_113336210.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408472.1;locus_tag=LLC55_RS02125;product=IS630 family transposase;protein_id=WP_113336210.1;transl_table=11 NZ_CP086200.1 RefSeq gene 447597 448334 . + . ID=gene-LLC55_RS02130;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=LLC55_RS02130;old_locus_tag=LLC55_02130 NZ_CP086200.1 Protein Homology CDS 447597 448334 . + 0 ID=cds-WP_027704265.1;Parent=gene-LLC55_RS02130;Dbxref=Genbank:WP_027704265.1;Name=WP_027704265.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fabG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506159.1;locus_tag=LLC55_RS02130;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_027704265.1;transl_table=11 NZ_CP086200.1 RefSeq gene 448438 448773 . - . ID=gene-LLC55_RS02135;Name=LLC55_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02135;old_locus_tag=LLC55_02135 NZ_CP086200.1 Protein Homology CDS 448438 448773 . - 0 ID=cds-WP_011407422.1;Parent=gene-LLC55_RS02135;Dbxref=Genbank:WP_011407422.1;Name=WP_011407422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116619.1;locus_tag=LLC55_RS02135;product=hypothetical protein;protein_id=WP_011407422.1;transl_table=11 NZ_CP086200.1 RefSeq gene 448863 450485 . - . ID=gene-LLC55_RS02140;Name=LLC55_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02140;old_locus_tag=LLC55_02140 NZ_CP086200.1 Protein Homology CDS 448863 450485 . - 0 ID=cds-WP_012446289.1;Parent=gene-LLC55_RS02140;Dbxref=Genbank:WP_012446289.1;Name=WP_012446289.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972221.1;locus_tag=LLC55_RS02140;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_012446289.1;transl_table=11 NZ_CP086200.1 RefSeq gene 450482 451303 . - . ID=gene-LLC55_RS02145;Name=LLC55_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02145;old_locus_tag=LLC55_02145 NZ_CP086200.1 Protein Homology CDS 450482 451303 . - 0 ID=cds-WP_011257392.1;Parent=gene-LLC55_RS02145;Dbxref=Genbank:WP_011257392.1;Name=WP_011257392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369782.1;locus_tag=LLC55_RS02145;product=glycosyltransferase family 2 protein;protein_id=WP_011257392.1;transl_table=11 NZ_CP086200.1 RefSeq gene 451300 452073 . - . ID=gene-LLC55_RS02150;Name=LLC55_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02150;old_locus_tag=LLC55_02150 NZ_CP086200.1 Protein Homology CDS 451300 452073 . - 0 ID=cds-WP_011257393.1;Parent=gene-LLC55_RS02150;Dbxref=Genbank:WP_011257393.1;Name=WP_011257393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302406.1;locus_tag=LLC55_RS02150;product=beta-ketoacyl synthase chain length factor;protein_id=WP_011257393.1;transl_table=11 NZ_CP086200.1 RefSeq gene 452073 453272 . - . ID=gene-LLC55_RS02155;Name=LLC55_RS02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02155;old_locus_tag=LLC55_02155 NZ_CP086200.1 Protein Homology CDS 452073 453272 . - 0 ID=cds-WP_011407424.1;Parent=gene-LLC55_RS02155;Dbxref=Genbank:WP_011407424.1;Name=WP_011407424.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117713.1;locus_tag=LLC55_RS02155;product=beta-ketoacyl-[acyl-carrier-protein] synthase family protein;protein_id=WP_011407424.1;transl_table=11 NZ_CP086200.1 RefSeq gene 453491 453751 . + . ID=gene-LLC55_RS02160;Name=LLC55_RS02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02160;old_locus_tag=LLC55_02160 NZ_CP086200.1 Protein Homology CDS 453491 453751 . + 0 ID=cds-WP_011407425.1;Parent=gene-LLC55_RS02160;Dbxref=Genbank:WP_011407425.1;Name=WP_011407425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156303.1;locus_tag=LLC55_RS02160;product=YcgL domain-containing protein;protein_id=WP_011407425.1;transl_table=11 NZ_CP086200.1 RefSeq gene 453744 457064 . + . ID=gene-LLC55_RS02165;Name=LLC55_RS02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02165;old_locus_tag=LLC55_02165 NZ_CP086200.1 Protein Homology CDS 453744 457064 . + 0 ID=cds-WP_069959701.1;Parent=gene-LLC55_RS02165;Dbxref=Genbank:WP_069959701.1;Name=WP_069959701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471441.1;locus_tag=LLC55_RS02165;product=ankyrin repeat domain-containing protein;protein_id=WP_069959701.1;transl_table=11 NZ_CP086200.1 RefSeq gene 457091 457420 . + . ID=gene-LLC55_RS02170;Name=LLC55_RS02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02170;old_locus_tag=LLC55_02170 NZ_CP086200.1 Protein Homology CDS 457091 457420 . + 0 ID=cds-WP_041181939.1;Parent=gene-LLC55_RS02170;Dbxref=Genbank:WP_041181939.1;Name=WP_041181939.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052720.1;locus_tag=LLC55_RS02170;product=phosphotyrosine protein phosphatase;protein_id=WP_041181939.1;transl_table=11 NZ_CP086200.1 RefSeq gene 457484 459283 . + . ID=gene-LLC55_RS02175;Name=LLC55_RS02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02175;old_locus_tag=LLC55_02175 NZ_CP086200.1 Protein Homology CDS 457484 459283 . + 0 ID=cds-WP_012446285.1;Parent=gene-LLC55_RS02175;Dbxref=Genbank:WP_012446285.1;Name=WP_012446285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158573.1;locus_tag=LLC55_RS02175;product=glycoside hydrolase family 15 protein;protein_id=WP_012446285.1;transl_table=11 NZ_CP086200.1 RefSeq gene 459280 461076 . + . ID=gene-LLC55_RS02180;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=LLC55_RS02180;old_locus_tag=LLC55_02180 NZ_CP086200.1 Protein Homology CDS 459280 461076 . + 0 ID=cds-WP_011407429.1;Parent=gene-LLC55_RS02180;Dbxref=Genbank:WP_011407429.1;Name=WP_011407429.1;Ontology_term=GO:0006098,GO:0004345;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501642.1;locus_tag=LLC55_RS02180;product=glucose-6-phosphate dehydrogenase;protein_id=WP_011407429.1;transl_table=11 NZ_CP086200.1 RefSeq gene 461557 462876 . + . ID=gene-LLC55_RS02185;Name=LLC55_RS02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02185;old_locus_tag=LLC55_02185 NZ_CP086200.1 Protein Homology CDS 461557 462876 . + 0 ID=cds-WP_117231491.1;Parent=gene-LLC55_RS02185;Dbxref=Genbank:WP_117231491.1;Name=WP_117231491.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS02185;product=IS701-like element ISXo15 family transposase;protein_id=WP_117231491.1;transl_table=11 NZ_CP086200.1 RefSeq gene 462976 464793 . - . ID=gene-LLC55_RS02190;Name=LLC55_RS02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02190;old_locus_tag=LLC55_02190 NZ_CP086200.1 Protein Homology CDS 462976 464793 . - 0 ID=cds-WP_069959702.1;Parent=gene-LLC55_RS02190;Dbxref=Genbank:WP_069959702.1;Name=WP_069959702.1;Ontology_term=GO:0006812,GO:1902600,GO:0005451,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=monovalent cation:proton antiporter activity|0005451||IEA;go_process=cation transport|0006812||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257399.1;locus_tag=LLC55_RS02190;product=monovalent cation:proton antiporter-2 (CPA2) family protein;protein_id=WP_069959702.1;transl_table=11 NZ_CP086200.1 RefSeq gene 465483 466850 . + . ID=gene-LLC55_RS02195;Name=mgtE;gbkey=Gene;gene=mgtE;gene_biotype=protein_coding;locus_tag=LLC55_RS02195;old_locus_tag=LLC55_02195 NZ_CP086200.1 Protein Homology CDS 465483 466850 . + 0 ID=cds-WP_011257400.1;Parent=gene-LLC55_RS02195;Dbxref=Genbank:WP_011257400.1;Name=WP_011257400.1;Ontology_term=GO:0015693,GO:0015095;gbkey=CDS;gene=mgtE;go_function=magnesium ion transmembrane transporter activity|0015095||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174334.1;locus_tag=LLC55_RS02195;product=magnesium transporter;protein_id=WP_011257400.1;transl_table=11 NZ_CP086200.1 RefSeq gene 466922 467536 . + . ID=gene-LLC55_RS02200;Name=LLC55_RS02200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02200;old_locus_tag=LLC55_02200 NZ_CP086200.1 Protein Homology CDS 466922 467536 . + 0 ID=cds-WP_069959703.1;Parent=gene-LLC55_RS02200;Dbxref=Genbank:WP_069959703.1;Name=WP_069959703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116272.1;locus_tag=LLC55_RS02200;product=hypothetical protein;protein_id=WP_069959703.1;transl_table=11 NZ_CP086200.1 RefSeq gene 467823 470531 . + . ID=gene-LLC55_RS02205;Name=LLC55_RS02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02205;old_locus_tag=LLC55_02205 NZ_CP086200.1 Protein Homology CDS 467823 470531 . + 0 ID=cds-WP_069959704.1;Parent=gene-LLC55_RS02205;Dbxref=Genbank:WP_069959704.1;Name=WP_069959704.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506173.1;locus_tag=LLC55_RS02205;product=bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase;protein_id=WP_069959704.1;transl_table=11 NZ_CP086200.1 RefSeq gene 470638 471681 . + . ID=gene-LLC55_RS02210;Name=LLC55_RS02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02210;old_locus_tag=LLC55_02210 NZ_CP086200.1 Protein Homology CDS 470638 471681 . + 0 ID=cds-WP_011407433.1;Parent=gene-LLC55_RS02210;Dbxref=Genbank:WP_011407433.1;Name=WP_011407433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487316.1;locus_tag=LLC55_RS02210;product=DUF475 domain-containing protein;protein_id=WP_011407433.1;transl_table=11 NZ_CP086200.1 RefSeq gene 472236 474734 . + . ID=gene-LLC55_RS02215;Name=LLC55_RS02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02215;old_locus_tag=LLC55_02215 NZ_CP086200.1 Protein Homology CDS 472236 474734 . + 0 ID=cds-WP_011257404.1;Parent=gene-LLC55_RS02215;Dbxref=Genbank:WP_011257404.1;Name=WP_011257404.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501652.1;locus_tag=LLC55_RS02215;product=ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_011257404.1;transl_table=11 NZ_CP086200.1 RefSeq gene 474911 475954 . + . ID=gene-LLC55_RS02220;Name=LLC55_RS02220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02220;old_locus_tag=LLC55_02220 NZ_CP086200.1 Protein Homology CDS 474911 475954 . + 0 ID=cds-WP_011257405.1;Parent=gene-LLC55_RS02220;Dbxref=Genbank:WP_011257405.1;Name=WP_011257405.1;Ontology_term=GO:0009263,GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809721.1;locus_tag=LLC55_RS02220;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_011257405.1;transl_table=11 NZ_CP086200.1 RefSeq gene 476044 476844 . + . ID=gene-LLC55_RS02225;Name=LLC55_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02225;old_locus_tag=LLC55_02225 NZ_CP086200.1 Protein Homology CDS 476044 476844 . + 0 ID=cds-WP_103057319.1;Parent=gene-LLC55_RS02225;Dbxref=Genbank:WP_103057319.1;Name=WP_103057319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989846.1;locus_tag=LLC55_RS02225;product=ImmA/IrrE family metallo-endopeptidase;protein_id=WP_103057319.1;transl_table=11 NZ_CP086200.1 RefSeq gene 476858 477352 . + . ID=gene-LLC55_RS02230;Name=LLC55_RS02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02230;old_locus_tag=LLC55_02230 NZ_CP086200.1 Protein Homology CDS 476858 477352 . + 0 ID=cds-WP_011407435.1;Parent=gene-LLC55_RS02230;Dbxref=Genbank:WP_011407435.1;Name=WP_011407435.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989848.1;locus_tag=LLC55_RS02230;product=flavodoxin;protein_id=WP_011407435.1;transl_table=11 NZ_CP086200.1 RefSeq gene 477324 477650 . + . ID=gene-LLC55_RS02235;Name=LLC55_RS02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02235;old_locus_tag=LLC55_02235 NZ_CP086200.1 Protein Homology CDS 477324 477650 . + 0 ID=cds-WP_011257407.1;Parent=gene-LLC55_RS02235;Dbxref=Genbank:WP_011257407.1;Name=WP_011257407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156291.1;locus_tag=LLC55_RS02235;product=thioredoxin family protein;protein_id=WP_011257407.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 477864 478967 . + . ID=gene-LLC55_RS02240;Name=LLC55_RS02240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02240;old_locus_tag=LLC55_02240;pseudo=true NZ_CP086200.1 Protein Homology CDS 477864 478967 . + 0 ID=cds-LLC55_RS02240;Parent=gene-LLC55_RS02240;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS02240;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 478997 479482 . + . ID=gene-LLC55_RS02245;Name=LLC55_RS02245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02245;old_locus_tag=LLC55_02245;partial=true;pseudo=true;start_range=.,478997 NZ_CP086200.1 Protein Homology CDS 478997 479482 . + 0 ID=cds-LLC55_RS02245;Parent=gene-LLC55_RS02245;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089108.1;locus_tag=LLC55_RS02245;partial=true;product=CoA-transferase subunit beta;pseudo=true;start_range=.,478997;transl_table=11 NZ_CP086200.1 RefSeq gene 479479 480687 . + . ID=gene-LLC55_RS02250;Name=pcaF;gbkey=Gene;gene=pcaF;gene_biotype=protein_coding;locus_tag=LLC55_RS02250;old_locus_tag=LLC55_02250 NZ_CP086200.1 Protein Homology CDS 479479 480687 . + 0 ID=cds-WP_011257409.1;Parent=gene-LLC55_RS02250;Dbxref=Genbank:WP_011257409.1;Name=WP_011257409.1;Ontology_term=GO:0019619,GO:0016747;gbkey=CDS;gene=pcaF;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=3%2C4-dihydroxybenzoate catabolic process|0019619||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577959.1;locus_tag=LLC55_RS02250;product=3-oxoadipyl-CoA thiolase;protein_id=WP_011257409.1;transl_table=11 NZ_CP086200.1 RefSeq gene 480766 481503 . + . ID=gene-LLC55_RS02255;Name=pcaH;gbkey=Gene;gene=pcaH;gene_biotype=protein_coding;locus_tag=LLC55_RS02255;old_locus_tag=LLC55_02255 NZ_CP086200.1 Protein Homology CDS 480766 481503 . + 0 ID=cds-WP_044757187.1;Parent=gene-LLC55_RS02255;Dbxref=Genbank:WP_044757187.1;Name=WP_044757187.1;Ontology_term=GO:0046278,GO:0018578;gbkey=CDS;gene=pcaH;go_function=protocatechuate 3%2C4-dioxygenase activity|0018578||IEA;go_process=3%2C4-dihydroxybenzoate metabolic process|0046278||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118364.1;locus_tag=LLC55_RS02255;product=protocatechuate 3%2C4-dioxygenase subunit beta;protein_id=WP_044757187.1;transl_table=11 NZ_CP086200.1 RefSeq gene 481508 482050 . + . ID=gene-LLC55_RS02260;Name=pcaG;gbkey=Gene;gene=pcaG;gene_biotype=protein_coding;locus_tag=LLC55_RS02260;old_locus_tag=LLC55_02260 NZ_CP086200.1 Protein Homology CDS 481508 482050 . + 0 ID=cds-WP_044757185.1;Parent=gene-LLC55_RS02260;Dbxref=Genbank:WP_044757185.1;Name=WP_044757185.1;Ontology_term=GO:0046278,GO:0018578;gbkey=CDS;gene=pcaG;go_function=protocatechuate 3%2C4-dioxygenase activity|0018578||IEA;go_process=3%2C4-dihydroxybenzoate metabolic process|0046278||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912759.1;locus_tag=LLC55_RS02260;product=protocatechuate 3%2C4-dioxygenase subunit alpha;protein_id=WP_044757185.1;transl_table=11 NZ_CP086200.1 RefSeq gene 482323 482400 . + . ID=gene-LLC55_RS02265;Name=LLC55_RS02265;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS02265;old_locus_tag=LLC55_02265 NZ_CP086200.1 cmsearch ncRNA 482323 482400 . + . ID=rna-LLC55_RS02265;Parent=gene-LLC55_RS02265;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02265;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 482323 482400 . + . ID=exon-LLC55_RS02265-1;Parent=rna-LLC55_RS02265;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02265;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 482551 483903 . + . ID=gene-LLC55_RS02270;Name=LLC55_RS02270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02270;old_locus_tag=LLC55_02270 NZ_CP086200.1 Protein Homology CDS 482551 483903 . + 0 ID=cds-WP_044757184.1;Parent=gene-LLC55_RS02270;Dbxref=Genbank:WP_044757184.1;Name=WP_044757184.1;Ontology_term=GO:0019619,GO:0047472;gbkey=CDS;go_function=3-carboxy-cis%2Ccis-muconate cycloisomerase activity|0047472||IEA;go_process=3%2C4-dihydroxybenzoate catabolic process|0019619||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113350.1;locus_tag=LLC55_RS02270;product=3-carboxy-cis%2Ccis-muconate cycloisomerase;protein_id=WP_044757184.1;transl_table=11 NZ_CP086200.1 RefSeq gene 483914 484696 . + . ID=gene-LLC55_RS02275;Name=pcaD;gbkey=Gene;gene=pcaD;gene_biotype=protein_coding;locus_tag=LLC55_RS02275;old_locus_tag=LLC55_02275 NZ_CP086200.1 Protein Homology CDS 483914 484696 . + 0 ID=cds-WP_011257413.1;Parent=gene-LLC55_RS02275;Dbxref=Genbank:WP_011257413.1;Name=WP_011257413.1;Ontology_term=GO:0042952,GO:0047570;gbkey=CDS;gene=pcaD;go_function=3-oxoadipate enol-lactonase activity|0047570||IEA;go_process=beta-ketoadipate pathway|0042952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118367.1;locus_tag=LLC55_RS02275;product=3-oxoadipate enol-lactonase;protein_id=WP_011257413.1;transl_table=11 NZ_CP086200.1 RefSeq gene 484722 485135 . + . ID=gene-LLC55_RS02280;Name=pcaC;gbkey=Gene;gene=pcaC;gene_biotype=protein_coding;locus_tag=LLC55_RS02280;old_locus_tag=LLC55_02280 NZ_CP086200.1 Protein Homology CDS 484722 485135 . + 0 ID=cds-WP_011407440.1;Parent=gene-LLC55_RS02280;Dbxref=Genbank:WP_011407440.1;Name=WP_011407440.1;Ontology_term=GO:0047575;gbkey=CDS;gene=pcaC;go_function=4-carboxymuconolactone decarboxylase activity|0047575||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485683.1;locus_tag=LLC55_RS02280;product=4-carboxymuconolactone decarboxylase;protein_id=WP_011407440.1;transl_table=11 NZ_CP086200.1 RefSeq gene 485436 486245 . + . ID=gene-LLC55_RS02285;Name=LLC55_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02285;old_locus_tag=LLC55_02285 NZ_CP086200.1 Protein Homology CDS 485436 486245 . + 0 ID=cds-WP_228329732.1;Parent=gene-LLC55_RS02285;Dbxref=Genbank:WP_228329732.1;Name=WP_228329732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089114.1;locus_tag=LLC55_RS02285;product=alpha/beta fold hydrolase;protein_id=WP_228329732.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 486593 487454 . - . ID=gene-LLC55_RS02290;Name=LLC55_RS02290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02290;old_locus_tag=LLC55_02290;pseudo=true NZ_CP086200.1 Protein Homology CDS 486593 487454 . - 0 ID=cds-LLC55_RS02290;Parent=gene-LLC55_RS02290;Note=frameshifted;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368966.1;locus_tag=LLC55_RS02290;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 487602 488462 . + . ID=gene-LLC55_RS02295;Name=LLC55_RS02295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02295;old_locus_tag=LLC55_02295 NZ_CP086200.1 Protein Homology CDS 487602 488462 . + 0 ID=cds-WP_011257417.1;Parent=gene-LLC55_RS02295;Dbxref=Genbank:WP_011257417.1;Name=WP_011257417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968468.1;locus_tag=LLC55_RS02295;product=serine protein kinase RIO;protein_id=WP_011257417.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 488704 489138 . + . ID=gene-LLC55_RS02300;Name=LLC55_RS02300;end_range=489138,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02300;old_locus_tag=LLC55_02300;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 488704 489138 . + 0 ID=cds-LLC55_RS02300;Parent=gene-LLC55_RS02300;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=489138,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182719.1;locus_tag=LLC55_RS02300;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 489430 490185 . - . ID=gene-LLC55_RS02305;Name=LLC55_RS02305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02305;old_locus_tag=LLC55_02305 NZ_CP086200.1 Protein Homology CDS 489430 490185 . - 0 ID=cds-WP_228329678.1;Parent=gene-LLC55_RS02305;Dbxref=Genbank:WP_228329678.1;Name=WP_228329678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995556.1;locus_tag=LLC55_RS02305;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_228329678.1;transl_table=11 NZ_CP086200.1 RefSeq gene 490280 490744 . - . ID=gene-LLC55_RS02310;Name=LLC55_RS02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02310;old_locus_tag=LLC55_02310 NZ_CP086200.1 Protein Homology CDS 490280 490744 . - 0 ID=cds-WP_011257420.1;Parent=gene-LLC55_RS02310;Dbxref=Genbank:WP_011257420.1;Name=WP_011257420.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407444.1;locus_tag=LLC55_RS02310;product=hypothetical protein;protein_id=WP_011257420.1;transl_table=11 NZ_CP086200.1 RefSeq gene 490751 491632 . - . ID=gene-LLC55_RS02315;Name=LLC55_RS02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02315;old_locus_tag=LLC55_02315 NZ_CP086200.1 Protein Homology CDS 490751 491632 . - 0 ID=cds-WP_011257421.1;Parent=gene-LLC55_RS02315;Dbxref=Genbank:WP_011257421.1;Name=WP_011257421.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091287.1;locus_tag=LLC55_RS02315;product=SPOR domain-containing protein;protein_id=WP_011257421.1;transl_table=11 NZ_CP086200.1 RefSeq gene 491812 493500 . - . ID=gene-LLC55_RS02320;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=LLC55_RS02320;old_locus_tag=LLC55_02320 NZ_CP086200.1 Protein Homology CDS 491812 493500 . - 0 ID=cds-WP_012446263.1;Parent=gene-LLC55_RS02320;Dbxref=Genbank:WP_012446263.1;Name=WP_012446263.1;Ontology_term=GO:0006420,GO:0004814,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300787.1;locus_tag=LLC55_RS02320;product=arginine--tRNA ligase;protein_id=WP_012446263.1;transl_table=11 NZ_CP086200.1 RefSeq gene 493588 494301 . - . ID=gene-LLC55_RS02325;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=LLC55_RS02325;old_locus_tag=LLC55_02325 NZ_CP086200.1 Protein Homology CDS 493588 494301 . - 0 ID=cds-WP_027703569.1;Parent=gene-LLC55_RS02325;Dbxref=Genbank:WP_027703569.1;Name=WP_027703569.1;Ontology_term=GO:0006281,GO:0003677;gbkey=CDS;gene=radC;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300786.1;locus_tag=LLC55_RS02325;product=DNA repair protein RadC;protein_id=WP_027703569.1;transl_table=11 NZ_CP086200.1 RefSeq gene 494362 495636 . + . ID=gene-LLC55_RS02330;Name=coaBC;gbkey=Gene;gene=coaBC;gene_biotype=protein_coding;locus_tag=LLC55_RS02330;old_locus_tag=LLC55_02330 NZ_CP086200.1 Protein Homology CDS 494362 495636 . + 0 ID=cds-WP_011257424.1;Parent=gene-LLC55_RS02330;Dbxref=Genbank:WP_011257424.1;Name=WP_011257424.1;Ontology_term=GO:0015937,GO:0015939,GO:0004632,GO:0004633;gbkey=CDS;gene=coaBC;go_function=phosphopantothenate--cysteine ligase activity|0004632||IEA,phosphopantothenoylcysteine decarboxylase activity|0004633||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA,pantothenate metabolic process|0015939||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964144.1;locus_tag=LLC55_RS02330;product=bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC;protein_id=WP_011257424.1;transl_table=11 NZ_CP086200.1 RefSeq gene 495633 496100 . + . ID=gene-LLC55_RS02335;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=LLC55_RS02335;old_locus_tag=LLC55_02335 NZ_CP086200.1 Protein Homology CDS 495633 496100 . + 0 ID=cds-WP_011407449.1;Parent=gene-LLC55_RS02335;Dbxref=Genbank:WP_011407449.1;Name=WP_011407449.1;Ontology_term=GO:0006226,GO:0046081,GO:0000287,GO:0004170;gbkey=CDS;gene=dut;go_function=magnesium ion binding|0000287||IEA,dUTP diphosphatase activity|0004170||IEA;go_process=dUMP biosynthetic process|0006226||IEA,dUTP catabolic process|0046081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091285.1;locus_tag=LLC55_RS02335;product=dUTP diphosphatase;protein_id=WP_011407449.1;transl_table=11 NZ_CP086200.1 RefSeq gene 496114 498462 . + . ID=gene-LLC55_RS02340;Name=LLC55_RS02340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02340;old_locus_tag=LLC55_02340 NZ_CP086200.1 Protein Homology CDS 496114 498462 . + 0 ID=cds-WP_069960143.1;Parent=gene-LLC55_RS02340;Dbxref=Genbank:WP_069960143.1;Name=WP_069960143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161151.1;locus_tag=LLC55_RS02340;product=phosphomannomutase/phosphoglucomutase;protein_id=WP_069960143.1;transl_table=11 NZ_CP086200.1 RefSeq gene 498570 499112 . - . ID=gene-LLC55_RS02345;Name=LLC55_RS02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02345;old_locus_tag=LLC55_02345 NZ_CP086200.1 Protein Homology CDS 498570 499112 . - 0 ID=cds-WP_171970783.1;Parent=gene-LLC55_RS02345;Dbxref=Genbank:WP_171970783.1;Name=WP_171970783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300782.1;locus_tag=LLC55_RS02345;product=hypothetical protein;protein_id=WP_171970783.1;transl_table=11 NZ_CP086200.1 RefSeq gene 499536 499877 . - . ID=gene-LLC55_RS02350;Name=LLC55_RS02350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02350;old_locus_tag=LLC55_02350 NZ_CP086200.1 Protein Homology CDS 499536 499877 . - 0 ID=cds-WP_010374733.1;Parent=gene-LLC55_RS02350;Dbxref=Genbank:WP_010374733.1;Name=WP_010374733.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156759.1;locus_tag=LLC55_RS02350;product=lipid-A-disaccharide synthase N-terminal domain-containing protein;protein_id=WP_010374733.1;transl_table=11 NZ_CP086200.1 RefSeq gene 499877 500599 . - . ID=gene-LLC55_RS02355;Name=LLC55_RS02355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02355;old_locus_tag=LLC55_02355 NZ_CP086200.1 Protein Homology CDS 499877 500599 . - 0 ID=cds-WP_011407452.1;Parent=gene-LLC55_RS02355;Dbxref=Genbank:WP_011407452.1;Name=WP_011407452.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038929.1;locus_tag=LLC55_RS02355;product=glycosyltransferase family 2 protein;protein_id=WP_011407452.1;transl_table=11 NZ_CP086200.1 RefSeq gene 500954 501919 . - . ID=gene-LLC55_RS02360;Name=LLC55_RS02360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02360;old_locus_tag=LLC55_02360 NZ_CP086200.1 Protein Homology CDS 500954 501919 . - 0 ID=cds-WP_044757178.1;Parent=gene-LLC55_RS02360;Dbxref=Genbank:WP_044757178.1;Name=WP_044757178.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169566.1;locus_tag=LLC55_RS02360;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_044757178.1;transl_table=11 NZ_CP086200.1 RefSeq gene 502124 502432 . - . ID=gene-LLC55_RS02365;Name=LLC55_RS02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02365;old_locus_tag=LLC55_02365 NZ_CP086200.1 Protein Homology CDS 502124 502432 . - 0 ID=cds-WP_011407454.1;Parent=gene-LLC55_RS02365;Dbxref=Genbank:WP_011407454.1;Name=WP_011407454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300778.1;locus_tag=LLC55_RS02365;product=helix-hairpin-helix domain-containing protein;protein_id=WP_011407454.1;transl_table=11 NZ_CP086200.1 RefSeq gene 502468 503397 . - . ID=gene-LLC55_RS02370;Name=LLC55_RS02370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02370;old_locus_tag=LLC55_02370 NZ_CP086200.1 Protein Homology CDS 502468 503397 . - 0 ID=cds-WP_011257431.1;Parent=gene-LLC55_RS02370;Dbxref=Genbank:WP_011257431.1;Name=WP_011257431.1;Ontology_term=GO:0000910,GO:0007059,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cytokinesis|0000910||IEA,chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163137.1;locus_tag=LLC55_RS02370;product=ParB/RepB/Spo0J family partition protein;protein_id=WP_011257431.1;transl_table=11 NZ_CP086200.1 RefSeq gene 503397 504194 . - . ID=gene-LLC55_RS02375;Name=LLC55_RS02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02375;old_locus_tag=LLC55_02375 NZ_CP086200.1 Protein Homology CDS 503397 504194 . - 0 ID=cds-WP_011257432.1;Parent=gene-LLC55_RS02375;Dbxref=Genbank:WP_011257432.1;Name=WP_011257432.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914407.1;locus_tag=LLC55_RS02375;product=AAA family ATPase;protein_id=WP_011257432.1;transl_table=11 NZ_CP086200.1 RefSeq gene 504308 504988 . - . ID=gene-LLC55_RS02380;Name=LLC55_RS02380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02380;old_locus_tag=LLC55_02380 NZ_CP086200.1 Protein Homology CDS 504308 504988 . - 0 ID=cds-WP_178383654.1;Parent=gene-LLC55_RS02380;Dbxref=Genbank:WP_178383654.1;Name=WP_178383654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407455.1;locus_tag=LLC55_RS02380;product=hypothetical protein;protein_id=WP_178383654.1;transl_table=11 NZ_CP086200.1 RefSeq gene 505011 505670 . - . ID=gene-LLC55_RS02385;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=LLC55_RS02385;old_locus_tag=LLC55_02385 NZ_CP086200.1 Protein Homology CDS 505011 505670 . - 0 ID=cds-WP_011257434.1;Parent=gene-LLC55_RS02385;Dbxref=Genbank:WP_011257434.1;Name=WP_011257434.1;Ontology_term=GO:0009220,GO:0004588;gbkey=CDS;gene=pyrE;go_function=orotate phosphoribosyltransferase activity|0004588||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374714.1;locus_tag=LLC55_RS02385;product=orotate phosphoribosyltransferase;protein_id=WP_011257434.1;transl_table=11 NZ_CP086200.1 RefSeq gene 505798 506598 . + . ID=gene-LLC55_RS02390;Name=LLC55_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02390;old_locus_tag=LLC55_02390 NZ_CP086200.1 Protein Homology CDS 505798 506598 . + 0 ID=cds-WP_012446253.1;Parent=gene-LLC55_RS02390;Dbxref=Genbank:WP_012446253.1;Name=WP_012446253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930855.1;locus_tag=LLC55_RS02390;product=exodeoxyribonuclease III;protein_id=WP_012446253.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 506676 506759 . + . ID=gene-LLC55_RS02395;Name=LLC55_RS02395;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02395;old_locus_tag=LLC55_02395;partial=true;pseudo=true;start_range=.,506676 NZ_CP086200.1 Protein Homology CDS 506676 506759 . + 0 ID=cds-LLC55_RS02395;Parent=gene-LLC55_RS02395;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930855.1;locus_tag=LLC55_RS02395;partial=true;product=exodeoxyribonuclease III;pseudo=true;start_range=.,506676;transl_table=11 NZ_CP086200.1 RefSeq gene 507079 508374 . + . ID=gene-LLC55_RS02400;Name=LLC55_RS02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02400;old_locus_tag=LLC55_02400 NZ_CP086200.1 Protein Homology CDS 507079 508374 . + 0 ID=cds-WP_011257436.1;Parent=gene-LLC55_RS02400;Dbxref=Genbank:WP_011257436.1;Name=WP_011257436.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930858.1;locus_tag=LLC55_RS02400;product=MFS transporter;protein_id=WP_011257436.1;transl_table=11 NZ_CP086200.1 RefSeq gene 508433 508660 . + . ID=gene-LLC55_RS02405;Name=LLC55_RS02405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02405;old_locus_tag=LLC55_02405 NZ_CP086200.1 Protein Homology CDS 508433 508660 . + 0 ID=cds-WP_011257437.1;Parent=gene-LLC55_RS02405;Dbxref=Genbank:WP_011257437.1;Name=WP_011257437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489057.1;locus_tag=LLC55_RS02405;product=hypothetical protein;protein_id=WP_011257437.1;transl_table=11 NZ_CP086200.1 RefSeq gene 508698 509831 . - . ID=gene-LLC55_RS02410;Name=LLC55_RS02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02410;old_locus_tag=LLC55_02410 NZ_CP086200.1 Protein Homology CDS 508698 509831 . - 0 ID=cds-WP_011257438.1;Parent=gene-LLC55_RS02410;Dbxref=Genbank:WP_011257438.1;Name=WP_011257438.1;Ontology_term=GO:0006040,GO:0009254,GO:0005524,GO:0016773;gbkey=CDS;go_function=ATP binding|0005524||IEA,phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=amino sugar metabolic process|0006040||IEA,peptidoglycan turnover|0009254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348848.1;locus_tag=LLC55_RS02410;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_011257438.1;transl_table=11 NZ_CP086200.1 RefSeq gene 510202 511620 . - . ID=gene-LLC55_RS02415;Name=LLC55_RS02415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02415;old_locus_tag=LLC55_02415 NZ_CP086200.1 Protein Homology CDS 510202 511620 . - 0 ID=cds-WP_011257439.1;Parent=gene-LLC55_RS02415;Dbxref=Genbank:WP_011257439.1;Name=WP_011257439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115461.1;locus_tag=LLC55_RS02415;product=M23 family metallopeptidase;protein_id=WP_011257439.1;transl_table=11 NZ_CP086200.1 RefSeq gene 511792 513003 . + . ID=gene-LLC55_RS02420;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=LLC55_RS02420;old_locus_tag=LLC55_02420 NZ_CP086200.1 Protein Homology CDS 511792 513003 . + 0 ID=cds-WP_011407458.1;Parent=gene-LLC55_RS02420;Dbxref=Genbank:WP_011407458.1;Name=WP_011407458.1;Ontology_term=GO:0006437,GO:0004831,GO:0005737;gbkey=CDS;gene=tyrS;go_component=cytoplasm|0005737||IEA;go_function=tyrosine-tRNA ligase activity|0004831||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407458.1;locus_tag=LLC55_RS02420;product=tyrosine--tRNA ligase;protein_id=WP_011407458.1;transl_table=11 NZ_CP086200.1 RefSeq gene 513727 515273 . + . ID=gene-LLC55_RS02425;Name=LLC55_RS02425;gbkey=Gene;gene_biotype=rRNA;locus_tag=LLC55_RS02425;old_locus_tag=LLC55_02425 NZ_CP086200.1 cmsearch rRNA 513727 515273 . + . ID=rna-LLC55_RS02425;Parent=gene-LLC55_RS02425;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02425;product=16S ribosomal RNA NZ_CP086200.1 cmsearch exon 513727 515273 . + . ID=exon-LLC55_RS02425-1;Parent=rna-LLC55_RS02425;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02425;product=16S ribosomal RNA NZ_CP086200.1 RefSeq gene 515367 515442 . + . ID=gene-LLC55_RS02430;Name=LLC55_RS02430;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS02430;old_locus_tag=LLC55_02430 NZ_CP086200.1 tRNAscan-SE tRNA 515367 515442 . + . ID=rna-LLC55_RS02430;Parent=gene-LLC55_RS02430;anticodon=(pos:515400..515402);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS02430;product=tRNA-Ala NZ_CP086200.1 tRNAscan-SE exon 515367 515442 . + . ID=exon-LLC55_RS02430-1;Parent=rna-LLC55_RS02430;anticodon=(pos:515400..515402);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS02430;product=tRNA-Ala NZ_CP086200.1 RefSeq gene 515462 515538 . + . ID=gene-LLC55_RS02435;Name=LLC55_RS02435;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS02435;old_locus_tag=LLC55_02435 NZ_CP086200.1 tRNAscan-SE tRNA 515462 515538 . + . ID=rna-LLC55_RS02435;Parent=gene-LLC55_RS02435;anticodon=(pos:515496..515498);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS02435;product=tRNA-Ile NZ_CP086200.1 tRNAscan-SE exon 515462 515538 . + . ID=exon-LLC55_RS02435-1;Parent=rna-LLC55_RS02435;anticodon=(pos:515496..515498);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS02435;product=tRNA-Ile NZ_CP086200.1 RefSeq gene 515766 518648 . + . ID=gene-LLC55_RS02440;Name=LLC55_RS02440;gbkey=Gene;gene_biotype=rRNA;locus_tag=LLC55_RS02440;old_locus_tag=LLC55_02440 NZ_CP086200.1 cmsearch rRNA 515766 518648 . + . ID=rna-LLC55_RS02440;Parent=gene-LLC55_RS02440;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02440;product=23S ribosomal RNA NZ_CP086200.1 cmsearch exon 515766 518648 . + . ID=exon-LLC55_RS02440-1;Parent=rna-LLC55_RS02440;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02440;product=23S ribosomal RNA NZ_CP086200.1 RefSeq gene 518822 518936 . + . ID=gene-LLC55_RS02445;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=LLC55_RS02445;old_locus_tag=LLC55_02445 NZ_CP086200.1 cmsearch rRNA 518822 518936 . + . ID=rna-LLC55_RS02445;Parent=gene-LLC55_RS02445;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02445;product=5S ribosomal RNA NZ_CP086200.1 cmsearch exon 518822 518936 . + . ID=exon-LLC55_RS02445-1;Parent=rna-LLC55_RS02445;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02445;product=5S ribosomal RNA NZ_CP086200.1 RefSeq pseudogene 519033 520075 . - . ID=gene-LLC55_RS02450;Name=LLC55_RS02450;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02450;old_locus_tag=LLC55_02450;pseudo=true NZ_CP086200.1 Protein Homology CDS 519033 520075 . - 0 ID=cds-LLC55_RS02450;Parent=gene-LLC55_RS02450;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS02450;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 520630 522939 . - . ID=gene-LLC55_RS02455;Name=LLC55_RS02455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02455;old_locus_tag=LLC55_02455 NZ_CP086200.1 Protein Homology CDS 520630 522939 . - 0 ID=cds-WP_011257440.1;Parent=gene-LLC55_RS02455;Dbxref=Genbank:WP_011257440.1;Name=WP_011257440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368087.1;locus_tag=LLC55_RS02455;product=ATP-binding protein;protein_id=WP_011257440.1;transl_table=11 NZ_CP086200.1 RefSeq gene 522940 524910 . - . ID=gene-LLC55_RS02460;Name=LLC55_RS02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02460;old_locus_tag=LLC55_02460 NZ_CP086200.1 Protein Homology CDS 522940 524910 . - 0 ID=cds-WP_075242157.1;Parent=gene-LLC55_RS02460;Dbxref=Genbank:WP_075242157.1;Name=WP_075242157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462808.1;locus_tag=LLC55_RS02460;product=EAL domain-containing response regulator;protein_id=WP_075242157.1;transl_table=11 NZ_CP086200.1 RefSeq gene 524949 525575 . - . ID=gene-LLC55_RS02465;Name=LLC55_RS02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02465;old_locus_tag=LLC55_02465 NZ_CP086200.1 Protein Homology CDS 524949 525575 . - 0 ID=cds-WP_011407461.1;Parent=gene-LLC55_RS02465;Dbxref=Genbank:WP_011407461.1;Name=WP_011407461.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808223.1;locus_tag=LLC55_RS02465;product=DUF4126 domain-containing protein;protein_id=WP_011407461.1;transl_table=11 NZ_CP086200.1 RefSeq gene 525683 526471 . + . ID=gene-LLC55_RS02470;Name=LLC55_RS02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02470;old_locus_tag=LLC55_02470 NZ_CP086200.1 Protein Homology CDS 525683 526471 . + 0 ID=cds-WP_052285780.1;Parent=gene-LLC55_RS02470;Dbxref=Genbank:WP_052285780.1;Name=WP_052285780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808222.1;locus_tag=LLC55_RS02470;product=hypothetical protein;protein_id=WP_052285780.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 526458 526907 . + . ID=gene-LLC55_RS02475;Name=LLC55_RS02475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02475;old_locus_tag=LLC55_02475;pseudo=true NZ_CP086200.1 Protein Homology CDS 526458 526907 . + 0 ID=cds-LLC55_RS02475;Parent=gene-LLC55_RS02475;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379445.1;locus_tag=LLC55_RS02475;product=polymer-forming cytoskeletal protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 526954 527717 . + . ID=gene-LLC55_RS02480;Name=LLC55_RS02480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02480;old_locus_tag=LLC55_02480 NZ_CP086200.1 Protein Homology CDS 526954 527269 . + 0 ID=cds-WP_094187715.1;Parent=gene-LLC55_RS02480;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS02480;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 527269 527717 . + 2 ID=cds-WP_094187715.1;Parent=gene-LLC55_RS02480;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS02480;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 527796 528182 . + . ID=gene-LLC55_RS02485;Name=erpA;gbkey=Gene;gene=erpA;gene_biotype=protein_coding;locus_tag=LLC55_RS02485;old_locus_tag=LLC55_02485 NZ_CP086200.1 Protein Homology CDS 527796 528182 . + 0 ID=cds-WP_011407463.1;Parent=gene-LLC55_RS02485;Dbxref=Genbank:WP_011407463.1;Name=WP_011407463.1;Ontology_term=GO:0016226,GO:0051536;gbkey=CDS;gene=erpA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411302.1;locus_tag=LLC55_RS02485;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_011407463.1;transl_table=11 NZ_CP086200.1 RefSeq gene 529109 530389 . + . ID=gene-LLC55_RS02490;Name=LLC55_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02490;old_locus_tag=LLC55_02490 NZ_CP086200.1 Protein Homology CDS 529109 530389 . + 0 ID=cds-WP_011407465.1;Parent=gene-LLC55_RS02490;Dbxref=Genbank:WP_011407465.1;Name=WP_011407465.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914181.1;locus_tag=LLC55_RS02490;product=lipase;protein_id=WP_011407465.1;transl_table=11 NZ_CP086200.1 RefSeq gene 530696 531586 . + . ID=gene-LLC55_RS02495;Name=nudC;gbkey=Gene;gene=nudC;gene_biotype=protein_coding;locus_tag=LLC55_RS02495;old_locus_tag=LLC55_02495 NZ_CP086200.1 Protein Homology CDS 530696 531586 . + 0 ID=cds-WP_011257448.1;Parent=gene-LLC55_RS02495;Dbxref=Genbank:WP_011257448.1;Name=WP_011257448.1;Ontology_term=GO:0000210,GO:0016787;gbkey=CDS;gene=nudC;go_function=NAD+ diphosphatase activity|0000210||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914180.1;locus_tag=LLC55_RS02495;product=NAD(+) diphosphatase;protein_id=WP_011257448.1;transl_table=11 NZ_CP086200.1 RefSeq gene 531660 532550 . + . ID=gene-LLC55_RS02500;Name=LLC55_RS02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02500;old_locus_tag=LLC55_02500 NZ_CP086200.1 Protein Homology CDS 531660 532550 . + 0 ID=cds-WP_011257449.1;Parent=gene-LLC55_RS02500;Dbxref=Genbank:WP_011257449.1;Name=WP_011257449.1;Ontology_term=GO:0009236,GO:0048472,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=threonine-phosphate decarboxylase activity|0048472||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019768466.1;locus_tag=LLC55_RS02500;product=cobalamin biosynthesis protein;protein_id=WP_011257449.1;transl_table=11 NZ_CP086200.1 RefSeq gene 532872 533279 . - . ID=gene-LLC55_RS02505;Name=LLC55_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02505;old_locus_tag=LLC55_02505 NZ_CP086200.1 Protein Homology CDS 532872 533279 . - 0 ID=cds-WP_075242191.1;Parent=gene-LLC55_RS02505;Dbxref=Genbank:WP_075242191.1;Name=WP_075242191.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407466.1;locus_tag=LLC55_RS02505;product=DUF2752 domain-containing protein;protein_id=WP_075242191.1;transl_table=11 NZ_CP086200.1 RefSeq gene 533282 533662 . - . ID=gene-LLC55_RS02510;Name=LLC55_RS02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02510;old_locus_tag=LLC55_02510 NZ_CP086200.1 Protein Homology CDS 533282 533662 . - 0 ID=cds-WP_011257450.1;Parent=gene-LLC55_RS02510;Dbxref=Genbank:WP_011257450.1;Name=WP_011257450.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257450.1;locus_tag=LLC55_RS02510;product=CD225/dispanin family protein;protein_id=WP_011257450.1;transl_table=11 NZ_CP086200.1 RefSeq gene 534123 536045 . - . ID=gene-LLC55_RS02515;Name=LLC55_RS02515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02515;old_locus_tag=LLC55_02515 NZ_CP086200.1 Protein Homology CDS 534123 536045 . - 0 ID=cds-WP_011257451.1;Parent=gene-LLC55_RS02515;Dbxref=Genbank:WP_011257451.1;Name=WP_011257451.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504924.1;locus_tag=LLC55_RS02515;product=MFS transporter;protein_id=WP_011257451.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 536146 537019 . - . ID=gene-LLC55_RS02520;Name=LLC55_RS02520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02520;old_locus_tag=LLC55_02520;partial=true;pseudo=true;start_range=.,536146 NZ_CP086200.1 Protein Homology CDS 536146 537019 . - 0 ID=cds-LLC55_RS02520;Parent=gene-LLC55_RS02520;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155948.1;locus_tag=LLC55_RS02520;partial=true;product=LysR family transcriptional regulator;pseudo=true;start_range=.,536146;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 537117 538306 . + . ID=gene-LLC55_RS02525;Name=LLC55_RS02525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02525;old_locus_tag=LLC55_02525;pseudo=true NZ_CP086200.1 Protein Homology CDS 537117 538306 . + 0 ID=cds-LLC55_RS02525;Parent=gene-LLC55_RS02525;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155947.1;locus_tag=LLC55_RS02525;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 538437 540650 . - . ID=gene-LLC55_RS02530;Name=yccS;gbkey=Gene;gene=yccS;gene_biotype=protein_coding;locus_tag=LLC55_RS02530;old_locus_tag=LLC55_02530 NZ_CP086200.1 Protein Homology CDS 538437 540650 . - 0 ID=cds-WP_011257452.1;Parent=gene-LLC55_RS02530;Dbxref=Genbank:WP_011257452.1;Name=WP_011257452.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yccS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155946.1;locus_tag=LLC55_RS02530;product=YccS family putative transporter;protein_id=WP_011257452.1;transl_table=11 NZ_CP086200.1 RefSeq gene 540876 541385 . - . ID=gene-LLC55_RS02535;Name=LLC55_RS02535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02535;old_locus_tag=LLC55_02535 NZ_CP086200.1 Protein Homology CDS 540876 541385 . - 0 ID=cds-WP_229001923.1;Parent=gene-LLC55_RS02535;Dbxref=Genbank:WP_229001923.1;Name=WP_229001923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_018055074.1;locus_tag=LLC55_RS02535;product=DUF4276 family protein;protein_id=WP_229001923.1;transl_table=11 NZ_CP086200.1 RefSeq gene 541454 542647 . - . ID=gene-LLC55_RS02540;Name=LLC55_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02540;old_locus_tag=LLC55_02540 NZ_CP086200.1 Protein Homology CDS 541454 542647 . - 0 ID=cds-WP_011257453.1;Parent=gene-LLC55_RS02540;Dbxref=Genbank:WP_011257453.1;Name=WP_011257453.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257453.1;locus_tag=LLC55_RS02540;product=AAA family ATPase;protein_id=WP_011257453.1;transl_table=11 NZ_CP086200.1 RefSeq gene 542800 544089 . - . ID=gene-LLC55_RS02545;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=LLC55_RS02545;old_locus_tag=LLC55_02545 NZ_CP086200.1 Protein Homology CDS 542800 544089 . - 0 ID=cds-WP_011257454.1;Parent=gene-LLC55_RS02545;Dbxref=Genbank:WP_011257454.1;Name=WP_011257454.1;Ontology_term=GO:0006189,GO:0009152,GO:0004637;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257454.1;locus_tag=LLC55_RS02545;product=phosphoribosylamine--glycine ligase;protein_id=WP_011257454.1;transl_table=11 NZ_CP086200.1 RefSeq gene 544110 544724 . - . ID=gene-LLC55_RS02550;Name=LLC55_RS02550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02550;old_locus_tag=LLC55_02550 NZ_CP086200.1 Protein Homology CDS 544110 544724 . - 0 ID=cds-WP_011407473.1;Parent=gene-LLC55_RS02550;Dbxref=Genbank:WP_011407473.1;Name=WP_011407473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379465.1;locus_tag=LLC55_RS02550;product=DUF4276 family protein;protein_id=WP_011407473.1;transl_table=11 NZ_CP086200.1 RefSeq gene 544724 545959 . - . ID=gene-LLC55_RS02555;Name=LLC55_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02555;old_locus_tag=LLC55_02555 NZ_CP086200.1 Protein Homology CDS 544724 545959 . - 0 ID=cds-WP_011257455.1;Parent=gene-LLC55_RS02555;Dbxref=Genbank:WP_011257455.1;Name=WP_011257455.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257455.1;locus_tag=LLC55_RS02555;product=AAA family ATPase;protein_id=WP_011257455.1;transl_table=11 NZ_CP086200.1 RefSeq gene 546009 547592 . - . ID=gene-LLC55_RS02560;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=LLC55_RS02560;old_locus_tag=LLC55_02560 NZ_CP086200.1 Protein Homology CDS 546009 547592 . - 0 ID=cds-WP_011407474.1;Parent=gene-LLC55_RS02560;Dbxref=Genbank:WP_011407474.1;Name=WP_011407474.1;Ontology_term=GO:0006164,GO:0006189,GO:0003824,GO:0003937,GO:0004643;gbkey=CDS;gene=purH;go_function=catalytic activity|0003824||IEA,IMP cyclohydrolase activity|0003937||IEA,phosphoribosylaminoimidazolecarboxamide formyltransferase activity|0004643||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA,'de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302295.1;locus_tag=LLC55_RS02560;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=WP_011407474.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 547666 548284 . + . ID=gene-LLC55_RS02565;Name=LLC55_RS02565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02565;old_locus_tag=LLC55_02565;pseudo=true NZ_CP086200.1 Protein Homology CDS 547666 548284 . + 0 ID=cds-LLC55_RS02565;Parent=gene-LLC55_RS02565;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967899.1;locus_tag=LLC55_RS02565;product=CDP-alcohol phosphatidyltransferase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 548442 550130 . + . ID=gene-LLC55_RS02570;Name=LLC55_RS02570;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02570;old_locus_tag=LLC55_02570;pseudo=true NZ_CP086200.1 Protein Homology CDS 548442 550130 . + 0 ID=cds-LLC55_RS02570;Parent=gene-LLC55_RS02570;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920129.1;locus_tag=LLC55_RS02570;product=bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 550127 550516 . + . ID=gene-LLC55_RS02575;Name=LLC55_RS02575;end_range=550516,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02575;old_locus_tag=LLC55_02575;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 550127 550516 . + 0 ID=cds-LLC55_RS02575;Parent=gene-LLC55_RS02575;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=550516,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155940.1;locus_tag=LLC55_RS02575;partial=true;product=serine/threonine protein phosphatase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 550522 551487 . - . ID=gene-LLC55_RS02580;Name=LLC55_RS02580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02580;old_locus_tag=LLC55_02580;pseudo=true NZ_CP086200.1 Protein Homology CDS 550522 551487 . - 0 ID=cds-LLC55_RS02580;Parent=gene-LLC55_RS02580;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS02580;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 551576 551767 . - . ID=gene-LLC55_RS02585;Name=LLC55_RS02585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02585;old_locus_tag=LLC55_02585;partial=true;pseudo=true;start_range=.,551576 NZ_CP086200.1 Protein Homology CDS 551576 551767 . - 0 ID=cds-LLC55_RS02585;Parent=gene-LLC55_RS02585;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS02585;partial=true;product=transposase;pseudo=true;start_range=.,551576;transl_table=11 NZ_CP086200.1 RefSeq gene 552172 552444 . - . ID=gene-LLC55_RS02590;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=LLC55_RS02590;old_locus_tag=LLC55_02590 NZ_CP086200.1 Protein Homology CDS 552172 552444 . - 0 ID=cds-WP_011257462.1;Parent=gene-LLC55_RS02590;Dbxref=Genbank:WP_011257462.1;Name=WP_011257462.1;gbkey=CDS;gene=fis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920134.1;locus_tag=LLC55_RS02590;product=DNA-binding transcriptional regulator Fis;protein_id=WP_011257462.1;transl_table=11 NZ_CP086200.1 RefSeq gene 552551 553783 . - . ID=gene-LLC55_RS02595;Name=LLC55_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02595;old_locus_tag=LLC55_02595 NZ_CP086200.1 Protein Homology CDS 552551 553783 . - 0 ID=cds-WP_011257463.1;Parent=gene-LLC55_RS02595;Dbxref=Genbank:WP_011257463.1;Name=WP_011257463.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920136.1;locus_tag=LLC55_RS02595;product=DUF3426 domain-containing protein;protein_id=WP_011257463.1;transl_table=11 NZ_CP086200.1 RefSeq gene 554107 554484 . - . ID=gene-LLC55_RS02600;Name=LLC55_RS02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02600;old_locus_tag=LLC55_02600 NZ_CP086200.1 Protein Homology CDS 554107 554484 . - 0 ID=cds-WP_011257464.1;Parent=gene-LLC55_RS02600;Dbxref=Genbank:WP_011257464.1;Name=WP_011257464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997552.1;locus_tag=LLC55_RS02600;product=helix-turn-helix domain-containing protein;protein_id=WP_011257464.1;transl_table=11 NZ_CP086200.1 RefSeq gene 554628 555143 . + . ID=gene-LLC55_RS02605;Name=LLC55_RS02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02605;old_locus_tag=LLC55_02605 NZ_CP086200.1 Protein Homology CDS 554628 555143 . + 0 ID=cds-WP_041181944.1;Parent=gene-LLC55_RS02605;Dbxref=Genbank:WP_041181944.1;Name=WP_041181944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571864.1;locus_tag=LLC55_RS02605;product=hypothetical protein;protein_id=WP_041181944.1;transl_table=11 NZ_CP086200.1 RefSeq gene 555221 555295 . + . ID=gene-LLC55_RS02610;Name=LLC55_RS02610;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS02610;old_locus_tag=LLC55_02610 NZ_CP086200.1 cmsearch ncRNA 555221 555295 . + . ID=rna-LLC55_RS02610;Parent=gene-LLC55_RS02610;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02610;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 555221 555295 . + . ID=exon-LLC55_RS02610-1;Parent=rna-LLC55_RS02610;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02610;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 555290 556231 . - . ID=gene-LLC55_RS02615;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=LLC55_RS02615;old_locus_tag=LLC55_02615 NZ_CP086200.1 Protein Homology CDS 555290 556231 . - 0 ID=cds-WP_011257466.1;Parent=gene-LLC55_RS02615;Dbxref=Genbank:WP_011257466.1;Name=WP_011257466.1;Ontology_term=GO:0036211,GO:0008757;gbkey=CDS;gene=prmA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257466.1;locus_tag=LLC55_RS02615;product=50S ribosomal protein L11 methyltransferase;protein_id=WP_011257466.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 557177 558102 . + . ID=gene-LLC55_RS02620;Name=LLC55_RS02620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02620;old_locus_tag=LLC55_02620;pseudo=true NZ_CP086200.1 Protein Homology CDS 557177 558102 . + 0 ID=cds-LLC55_RS02620;Parent=gene-LLC55_RS02620;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301597.1;locus_tag=LLC55_RS02620;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 558099 558464 . + . ID=gene-LLC55_RS02625;Name=LLC55_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02625;old_locus_tag=LLC55_02625 NZ_CP086200.1 Protein Homology CDS 558099 558464 . + 0 ID=cds-WP_011257468.1;Parent=gene-LLC55_RS02625;Dbxref=Genbank:WP_011257468.1;Name=WP_011257468.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257468.1;locus_tag=LLC55_RS02625;product=hypothetical protein;protein_id=WP_011257468.1;transl_table=11 NZ_CP086200.1 RefSeq gene 558603 559970 . - . ID=gene-LLC55_RS02630;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=LLC55_RS02630;old_locus_tag=LLC55_02630 NZ_CP086200.1 Protein Homology CDS 558603 559970 . - 0 ID=cds-WP_010368143.1;Parent=gene-LLC55_RS02630;Dbxref=Genbank:WP_010368143.1;Name=WP_010368143.1;Ontology_term=GO:0006633,GO:0003989,GO:0004075,GO:0009317;gbkey=CDS;gene=accC;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA,biotin carboxylase activity|0004075||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660825.1;locus_tag=LLC55_RS02630;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_010368143.1;transl_table=11 NZ_CP086200.1 RefSeq gene 560006 560413 . - . ID=gene-LLC55_RS02635;Name=LLC55_RS02635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02635;old_locus_tag=LLC55_02635 NZ_CP086200.1 Protein Homology CDS 560006 560413 . - 0 ID=cds-WP_069959706.1;Parent=gene-LLC55_RS02635;Dbxref=Genbank:WP_069959706.1;Name=WP_069959706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407484.1;locus_tag=LLC55_RS02635;product=four helix bundle protein;protein_id=WP_069959706.1;transl_table=11 NZ_CP086200.1 RefSeq gene 560446 560931 . - . ID=gene-LLC55_RS02640;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=LLC55_RS02640;old_locus_tag=LLC55_02640 NZ_CP086200.1 Protein Homology CDS 560446 560931 . - 0 ID=cds-WP_011257470.1;Parent=gene-LLC55_RS02640;Dbxref=Genbank:WP_011257470.1;Name=WP_011257470.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accB;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155928.1;locus_tag=LLC55_RS02640;product=acetyl-CoA carboxylase biotin carboxyl carrier protein;protein_id=WP_011257470.1;transl_table=11 NZ_CP086200.1 RefSeq gene 561030 561476 . - . ID=gene-LLC55_RS02645;Name=aroQ;gbkey=Gene;gene=aroQ;gene_biotype=protein_coding;locus_tag=LLC55_RS02645;old_locus_tag=LLC55_02645 NZ_CP086200.1 Protein Homology CDS 561030 561476 . - 0 ID=cds-WP_011407485.1;Parent=gene-LLC55_RS02645;Dbxref=Genbank:WP_011407485.1;Name=WP_011407485.1;Ontology_term=GO:0009423,GO:0003855;gbkey=CDS;gene=aroQ;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169658.1;locus_tag=LLC55_RS02645;product=type II 3-dehydroquinate dehydratase;protein_id=WP_011407485.1;transl_table=11 NZ_CP086200.1 RefSeq gene 562316 564640 . - . ID=gene-LLC55_RS02650;Name=LLC55_RS02650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02650;old_locus_tag=LLC55_02650 NZ_CP086200.1 Protein Homology CDS 562316 564640 . - 0 ID=cds-WP_011407486.1;Parent=gene-LLC55_RS02650;Dbxref=Genbank:WP_011407486.1;Name=WP_011407486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346209.1;locus_tag=LLC55_RS02650;product=protein-disulfide reductase DsbD;protein_id=WP_011407486.1;transl_table=11 NZ_CP086200.1 RefSeq gene 564646 564978 . - . ID=gene-LLC55_RS02655;Name=LLC55_RS02655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02655;old_locus_tag=LLC55_02655 NZ_CP086200.1 Protein Homology CDS 564646 564978 . - 0 ID=cds-WP_011407487.1;Parent=gene-LLC55_RS02655;Dbxref=Genbank:WP_011407487.1;Name=WP_011407487.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368153.1;locus_tag=LLC55_RS02655;product=divalent-cation tolerance protein CutA;protein_id=WP_011407487.1;transl_table=11 NZ_CP086200.1 RefSeq gene 565162 566127 . - . ID=gene-LLC55_RS02660;Name=LLC55_RS02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02660;old_locus_tag=LLC55_02660 NZ_CP086200.1 Protein Homology CDS 565162 566127 . - 0 ID=cds-WP_109181928.1;Parent=gene-LLC55_RS02660;Dbxref=Genbank:WP_109181928.1;Name=WP_109181928.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS02660;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181928.1;transl_table=11 NZ_CP086200.1 RefSeq gene 566428 566503 . + . ID=gene-LLC55_RS02665;Name=LLC55_RS02665;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS02665;old_locus_tag=LLC55_02665 NZ_CP086200.1 cmsearch ncRNA 566428 566503 . + . ID=rna-LLC55_RS02665;Parent=gene-LLC55_RS02665;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02665;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 566428 566503 . + . ID=exon-LLC55_RS02665-1;Parent=rna-LLC55_RS02665;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02665;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 566595 567914 . - . ID=gene-LLC55_RS02670;Name=LLC55_RS02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02670;old_locus_tag=LLC55_02670 NZ_CP086200.1 Protein Homology CDS 566595 567914 . - 0 ID=cds-WP_011407489.1;Parent=gene-LLC55_RS02670;Dbxref=Genbank:WP_011407489.1;Name=WP_011407489.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS02670;product=IS701-like element ISXo15 family transposase;protein_id=WP_011407489.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 567985 568170 . - . ID=gene-LLC55_RS02675;Name=LLC55_RS02675;end_range=568170,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02675;old_locus_tag=LLC55_02675;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 567985 568170 . - 0 ID=cds-LLC55_RS02675;Parent=gene-LLC55_RS02675;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=568170,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161135.1;locus_tag=LLC55_RS02675;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 568164 568490 . + . ID=gene-LLC55_RS02680;Name=LLC55_RS02680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02680;old_locus_tag=LLC55_02680;partial=true;pseudo=true;start_range=.,568164 NZ_CP086200.1 Protein Homology CDS 568164 568490 . + 0 ID=cds-LLC55_RS02680;Parent=gene-LLC55_RS02680;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS02680;partial=true;product=hypothetical protein;pseudo=true;start_range=.,568164;transl_table=11 NZ_CP086200.1 RefSeq gene 568444 568959 . - . ID=gene-LLC55_RS02685;Name=LLC55_RS02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02685;old_locus_tag=LLC55_02685 NZ_CP086200.1 Protein Homology CDS 568444 568959 . - 0 ID=cds-WP_011257475.1;Parent=gene-LLC55_RS02685;Dbxref=Genbank:WP_011257475.1;Name=WP_011257475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012510657.1;locus_tag=LLC55_RS02685;product=IS110 family transposase;protein_id=WP_011257475.1;transl_table=11 NZ_CP086200.1 RefSeq gene 569362 571584 . - . ID=gene-LLC55_RS02690;Name=LLC55_RS02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02690;old_locus_tag=LLC55_02690 NZ_CP086200.1 Protein Homology CDS 569362 571584 . - 0 ID=cds-WP_011257476.1;Parent=gene-LLC55_RS02690;Dbxref=Genbank:WP_011257476.1;Name=WP_011257476.1;Ontology_term=GO:0006260,GO:0032508,GO:0003678;gbkey=CDS;go_function=DNA helicase activity|0003678||IEA;go_process=DNA replication|0006260||IEA,DNA duplex unwinding|0032508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167545.1;locus_tag=LLC55_RS02690;product=primosomal protein N';protein_id=WP_011257476.1;transl_table=11 NZ_CP086200.1 RefSeq gene 572050 573075 . + . ID=gene-LLC55_RS02695;Name=LLC55_RS02695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02695;old_locus_tag=LLC55_02695 NZ_CP086200.1 Protein Homology CDS 572050 573075 . + 0 ID=cds-WP_011257477.1;Parent=gene-LLC55_RS02695;Dbxref=Genbank:WP_011257477.1;Name=WP_011257477.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157040.1;locus_tag=LLC55_RS02695;product=hypothetical protein;protein_id=WP_011257477.1;transl_table=11 NZ_CP086200.1 RefSeq gene 573059 573661 . + . ID=gene-LLC55_RS02700;Name=LLC55_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02700;old_locus_tag=LLC55_02700 NZ_CP086200.1 Protein Homology CDS 573059 573661 . + 0 ID=cds-WP_069959707.1;Parent=gene-LLC55_RS02700;Dbxref=Genbank:WP_069959707.1;Name=WP_069959707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443959.1;locus_tag=LLC55_RS02700;product=DUF3106 domain-containing protein;protein_id=WP_069959707.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 573992 575174 . - . ID=gene-LLC55_RS02705;Name=LLC55_RS02705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02705;old_locus_tag=LLC55_02705;pseudo=true NZ_CP086200.1 Protein Homology CDS 573992 575174 . - 0 ID=cds-LLC55_RS02705;Parent=gene-LLC55_RS02705;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969561.1;locus_tag=LLC55_RS02705;product=DUF3667 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 575455 576831 . + . ID=gene-LLC55_RS02710;Name=LLC55_RS02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02710;old_locus_tag=LLC55_02710 NZ_CP086200.1 Protein Homology CDS 575455 576831 . + 0 ID=cds-WP_011407493.1;Parent=gene-LLC55_RS02710;Dbxref=Genbank:WP_011407493.1;Name=WP_011407493.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091226.1;locus_tag=LLC55_RS02710;product=MATE family efflux transporter;protein_id=WP_011407493.1;transl_table=11 NZ_CP086200.1 RefSeq gene 576916 578817 . + . ID=gene-LLC55_RS02715;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=LLC55_RS02715;old_locus_tag=LLC55_02715 NZ_CP086200.1 Protein Homology CDS 576916 578817 . + 0 ID=cds-WP_011407494.1;Parent=gene-LLC55_RS02715;Dbxref=Genbank:WP_011407494.1;Name=WP_011407494.1;Ontology_term=GO:0006465,GO:0006508,GO:0008233,GO:0016020;gbkey=CDS;gene=sppA;go_component=membrane|0016020||IEA;go_function=peptidase activity|0008233||IEA;go_process=signal peptide processing|0006465||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300058.1;locus_tag=LLC55_RS02715;product=signal peptide peptidase SppA;protein_id=WP_011407494.1;transl_table=11 NZ_CP086200.1 RefSeq gene 579003 579218 . - . ID=gene-LLC55_RS02720;Name=LLC55_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02720;old_locus_tag=LLC55_02720 NZ_CP086200.1 Protein Homology CDS 579003 579218 . - 0 ID=cds-WP_011257482.1;Parent=gene-LLC55_RS02720;Dbxref=Genbank:WP_011257482.1;Name=WP_011257482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157045.1;locus_tag=LLC55_RS02720;product=hypothetical protein;protein_id=WP_011257482.1;transl_table=11 NZ_CP086200.1 RefSeq gene 579325 580101 . + . ID=gene-LLC55_RS02725;Name=LLC55_RS02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02725;old_locus_tag=LLC55_02725 NZ_CP086200.1 Protein Homology CDS 579325 580101 . + 0 ID=cds-WP_011407495.1;Parent=gene-LLC55_RS02725;Dbxref=Genbank:WP_011407495.1;Name=WP_011407495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903673.1;locus_tag=LLC55_RS02725;product=SDR family oxidoreductase;protein_id=WP_011407495.1;transl_table=11 NZ_CP086200.1 RefSeq gene 580263 580910 . - . ID=gene-LLC55_RS02730;Name=LLC55_RS02730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02730;old_locus_tag=LLC55_02730 NZ_CP086200.1 Protein Homology CDS 580263 580910 . - 0 ID=cds-WP_171970790.1;Parent=gene-LLC55_RS02730;Dbxref=Genbank:WP_171970790.1;Name=WP_171970790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157047.1;locus_tag=LLC55_RS02730;product=DUF4124 domain-containing protein;protein_id=WP_171970790.1;transl_table=11 NZ_CP086200.1 RefSeq gene 580934 581707 . - . ID=gene-LLC55_RS02735;Name=LLC55_RS02735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02735;old_locus_tag=LLC55_02735 NZ_CP086200.1 Protein Homology CDS 580934 581707 . - 0 ID=cds-WP_011407497.1;Parent=gene-LLC55_RS02735;Dbxref=Genbank:WP_011407497.1;Name=WP_011407497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572028.1;locus_tag=LLC55_RS02735;product=hypothetical protein;protein_id=WP_011407497.1;transl_table=11 NZ_CP086200.1 RefSeq gene 581931 582494 . - . ID=gene-LLC55_RS02740;Name=LLC55_RS02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02740;old_locus_tag=LLC55_02740 NZ_CP086200.1 Protein Homology CDS 581931 582494 . - 0 ID=cds-WP_011257486.1;Parent=gene-LLC55_RS02740;Dbxref=Genbank:WP_011257486.1;Name=WP_011257486.1;Ontology_term=GO:0003725;gbkey=CDS;go_function=double-stranded RNA binding|0003725||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921907.1;locus_tag=LLC55_RS02740;product=Sua5/YciO/YrdC/YwlC family protein;protein_id=WP_011257486.1;transl_table=11 NZ_CP086200.1 RefSeq gene 582505 584997 . - . ID=gene-LLC55_RS02745;Name=LLC55_RS02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02745;old_locus_tag=LLC55_02745 NZ_CP086200.1 Protein Homology CDS 582505 584997 . - 0 ID=cds-WP_011257487.1;Parent=gene-LLC55_RS02745;Dbxref=Genbank:WP_011257487.1;Name=WP_011257487.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370069.1;locus_tag=LLC55_RS02745;product=DNA topoisomerase I;protein_id=WP_011257487.1;transl_table=11 NZ_CP086200.1 RefSeq gene 585180 586454 . - . ID=gene-LLC55_RS02750;Name=LLC55_RS02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02750;old_locus_tag=LLC55_02750 NZ_CP086200.1 Protein Homology CDS 585180 586454 . - 0 ID=cds-WP_011257488.1;Parent=gene-LLC55_RS02750;Dbxref=Genbank:WP_011257488.1;Name=WP_011257488.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112322.1;locus_tag=LLC55_RS02750;product=RDD family protein;protein_id=WP_011257488.1;transl_table=11 NZ_CP086200.1 RefSeq gene 586496 587218 . - . ID=gene-LLC55_RS02755;Name=LLC55_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02755;old_locus_tag=LLC55_02755 NZ_CP086200.1 Protein Homology CDS 586496 587218 . - 0 ID=cds-WP_069959711.1;Parent=gene-LLC55_RS02755;Dbxref=Genbank:WP_069959711.1;Name=WP_069959711.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348786.1;locus_tag=LLC55_RS02755;product=pilin;protein_id=WP_069959711.1;transl_table=11 NZ_CP086200.1 RefSeq gene 587259 587732 . - . ID=gene-LLC55_RS02760;Name=LLC55_RS02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02760;old_locus_tag=LLC55_02760 NZ_CP086200.1 Protein Homology CDS 587259 587732 . - 0 ID=cds-WP_011257490.1;Parent=gene-LLC55_RS02760;Dbxref=Genbank:WP_011257490.1;Name=WP_011257490.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159357.1;locus_tag=LLC55_RS02760;product=DUF494 family protein;protein_id=WP_011257490.1;transl_table=11 NZ_CP086200.1 RefSeq gene 587775 588917 . - . ID=gene-LLC55_RS02765;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=protein_coding;locus_tag=LLC55_RS02765;old_locus_tag=LLC55_02765 NZ_CP086200.1 Protein Homology CDS 587775 588917 . - 0 ID=cds-WP_011257491.1;Parent=gene-LLC55_RS02765;Dbxref=Genbank:WP_011257491.1;Name=WP_011257491.1;Ontology_term=GO:0009294;gbkey=CDS;gene=dprA;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091219.1;locus_tag=LLC55_RS02765;product=DNA-processing protein DprA;protein_id=WP_011257491.1;transl_table=11 NZ_CP086200.1 RefSeq gene 588989 590125 . - . ID=gene-LLC55_RS02770;Name=LLC55_RS02770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02770;old_locus_tag=LLC55_02770 NZ_CP086200.1 Protein Homology CDS 588989 590125 . - 0 ID=cds-WP_011407499.1;Parent=gene-LLC55_RS02770;Dbxref=Genbank:WP_011407499.1;Name=WP_011407499.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927359.1;locus_tag=LLC55_RS02770;product=LysM peptidoglycan-binding domain-containing protein;protein_id=WP_011407499.1;transl_table=11 NZ_CP086200.1 RefSeq gene 590258 590770 . + . ID=gene-LLC55_RS02775;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=LLC55_RS02775;old_locus_tag=LLC55_02775 NZ_CP086200.1 Protein Homology CDS 590258 590770 . + 0 ID=cds-WP_011257493.1;Parent=gene-LLC55_RS02775;Dbxref=Genbank:WP_011257493.1;Name=WP_011257493.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911379.1;locus_tag=LLC55_RS02775;product=peptide deformylase;protein_id=WP_011257493.1;transl_table=11 NZ_CP086200.1 RefSeq gene 591164 592087 . + . ID=gene-LLC55_RS02780;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=LLC55_RS02780;old_locus_tag=LLC55_02780 NZ_CP086200.1 Protein Homology CDS 591164 592087 . + 0 ID=cds-WP_011257494.1;Parent=gene-LLC55_RS02780;Dbxref=Genbank:WP_011257494.1;Name=WP_011257494.1;Ontology_term=GO:0006431,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921922.1;locus_tag=LLC55_RS02780;product=methionyl-tRNA formyltransferase;protein_id=WP_011257494.1;transl_table=11 NZ_CP086200.1 RefSeq gene 592087 593400 . + . ID=gene-LLC55_RS02785;Name=rsmB;gbkey=Gene;gene=rsmB;gene_biotype=protein_coding;locus_tag=LLC55_RS02785;old_locus_tag=LLC55_02785 NZ_CP086200.1 Protein Homology CDS 592087 593400 . + 0 ID=cds-WP_075242207.1;Parent=gene-LLC55_RS02785;Dbxref=Genbank:WP_075242207.1;Name=WP_075242207.1;Ontology_term=GO:0001510,GO:0006355,GO:0006364,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmB;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA,regulation of DNA-templated transcription|0006355||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849283.1;locus_tag=LLC55_RS02785;product=16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;protein_id=WP_075242207.1;transl_table=11 NZ_CP086200.1 RefSeq gene 593451 595172 . + . ID=gene-LLC55_RS02790;Name=LLC55_RS02790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02790;old_locus_tag=LLC55_02790 NZ_CP086200.1 Protein Homology CDS 593451 595172 . + 0 ID=cds-WP_011257496.1;Parent=gene-LLC55_RS02790;Dbxref=Genbank:WP_011257496.1;Name=WP_011257496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091215.1;locus_tag=LLC55_RS02790;product=glycosyltransferase family 39 protein;protein_id=WP_011257496.1;transl_table=11 NZ_CP086200.1 RefSeq gene 595337 596614 . + . ID=gene-LLC55_RS02795;Name=LLC55_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02795;old_locus_tag=LLC55_02795 NZ_CP086200.1 Protein Homology CDS 595337 596614 . + 0 ID=cds-WP_011257497.1;Parent=gene-LLC55_RS02795;Dbxref=Genbank:WP_011257497.1;Name=WP_011257497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504878.1;locus_tag=LLC55_RS02795;product=O-antigen ligase;protein_id=WP_011257497.1;transl_table=11 NZ_CP086200.1 RefSeq gene 596812 597636 . - . ID=gene-LLC55_RS02800;Name=LLC55_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02800;old_locus_tag=LLC55_02800 NZ_CP086200.1 Protein Homology CDS 596812 597636 . - 0 ID=cds-WP_011257498.1;Parent=gene-LLC55_RS02800;Dbxref=Genbank:WP_011257498.1;Name=WP_011257498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115138.1;locus_tag=LLC55_RS02800;product=glycosyltransferase family 2 protein;protein_id=WP_011257498.1;transl_table=11 NZ_CP086200.1 RefSeq gene 597637 598695 . + . ID=gene-LLC55_RS02805;Name=LLC55_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02805;old_locus_tag=LLC55_02805 NZ_CP086200.1 Protein Homology CDS 597637 598695 . + 0 ID=cds-WP_011257499.1;Parent=gene-LLC55_RS02805;Dbxref=Genbank:WP_011257499.1;Name=WP_011257499.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157061.1;locus_tag=LLC55_RS02805;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_011257499.1;transl_table=11 NZ_CP086200.1 RefSeq gene 598861 600327 . - . ID=gene-LLC55_RS02810;Name=LLC55_RS02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02810;old_locus_tag=LLC55_02810 NZ_CP086200.1 Protein Homology CDS 598861 600327 . - 0 ID=cds-WP_011257500.1;Parent=gene-LLC55_RS02810;Dbxref=Genbank:WP_011257500.1;Name=WP_011257500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157062.1;locus_tag=LLC55_RS02810;product=PH domain-containing protein;protein_id=WP_011257500.1;transl_table=11 NZ_CP086200.1 RefSeq gene 600324 600827 . - . ID=gene-LLC55_RS02815;Name=LLC55_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02815;old_locus_tag=LLC55_02815 NZ_CP086200.1 Protein Homology CDS 600324 600827 . - 0 ID=cds-WP_042465436.1;Parent=gene-LLC55_RS02815;Dbxref=Genbank:WP_042465436.1;Name=WP_042465436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504874.1;locus_tag=LLC55_RS02815;product=PH domain-containing protein;protein_id=WP_042465436.1;transl_table=11 NZ_CP086200.1 RefSeq gene 600937 602070 . - . ID=gene-LLC55_RS02820;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=LLC55_RS02820;old_locus_tag=LLC55_02820 NZ_CP086200.1 Protein Homology CDS 600937 602070 . - 0 ID=cds-WP_011257502.1;Parent=gene-LLC55_RS02820;Dbxref=Genbank:WP_011257502.1;Name=WP_011257502.1;gbkey=CDS;gene=ribA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162247.1;locus_tag=LLC55_RS02820;product=GTP cyclohydrolase II RibA;protein_id=WP_011257502.1;transl_table=11 NZ_CP086200.1 RefSeq gene 602313 602834 . + . ID=gene-LLC55_RS02825;Name=LLC55_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02825;old_locus_tag=LLC55_02825 NZ_CP086200.1 Protein Homology CDS 602313 602834 . + 0 ID=cds-WP_011407503.1;Parent=gene-LLC55_RS02825;Dbxref=Genbank:WP_011407503.1;Name=WP_011407503.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484403.1;locus_tag=LLC55_RS02825;product=GNAT family N-acetyltransferase;protein_id=WP_011407503.1;transl_table=11 NZ_CP086200.1 RefSeq gene 602896 602975 . + . ID=gene-LLC55_RS02830;Name=LLC55_RS02830;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS02830;old_locus_tag=LLC55_02830 NZ_CP086200.1 cmsearch ncRNA 602896 602975 . + . ID=rna-LLC55_RS02830;Parent=gene-LLC55_RS02830;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02830;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 602896 602975 . + . ID=exon-LLC55_RS02830-1;Parent=rna-LLC55_RS02830;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS02830;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 603034 604050 . - . ID=gene-LLC55_RS02835;Name=LLC55_RS02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02835;old_locus_tag=LLC55_02835 NZ_CP086200.1 Protein Homology CDS 603034 604050 . - 0 ID=cds-WP_011257504.1;Parent=gene-LLC55_RS02835;Dbxref=Genbank:WP_011257504.1;Name=WP_011257504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348771.1;locus_tag=LLC55_RS02835;product=lauroyl acyltransferase;protein_id=WP_011257504.1;transl_table=11 NZ_CP086200.1 RefSeq gene 604049 604489 . + . ID=gene-LLC55_RS02840;Name=dtd;gbkey=Gene;gene=dtd;gene_biotype=protein_coding;locus_tag=LLC55_RS02840;old_locus_tag=LLC55_02840 NZ_CP086200.1 Protein Homology CDS 604049 604489 . + 0 ID=cds-WP_011257505.1;Parent=gene-LLC55_RS02840;Dbxref=Genbank:WP_011257505.1;Name=WP_011257505.1;Ontology_term=GO:0008152,GO:0004045;gbkey=CDS;gene=dtd;go_function=aminoacyl-tRNA hydrolase activity|0004045||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453176.1;locus_tag=LLC55_RS02840;product=D-aminoacyl-tRNA deacylase;protein_id=WP_011257505.1;transl_table=11 NZ_CP086200.1 RefSeq gene 604598 606472 . + . ID=gene-LLC55_RS02845;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=LLC55_RS02845;old_locus_tag=LLC55_02845 NZ_CP086200.1 Protein Homology CDS 604598 606472 . + 0 ID=cds-WP_011407505.1;Parent=gene-LLC55_RS02845;Dbxref=Genbank:WP_011407505.1;Name=WP_011407505.1;Ontology_term=GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157069.1;locus_tag=LLC55_RS02845;product=RNA polymerase sigma factor RpoD;protein_id=WP_011407505.1;transl_table=11 NZ_CP086200.1 RefSeq gene 606665 606985 . + . ID=gene-LLC55_RS02850;Name=LLC55_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02850;old_locus_tag=LLC55_02850 NZ_CP086200.1 Protein Homology CDS 606665 606985 . + 0 ID=cds-WP_011407506.1;Parent=gene-LLC55_RS02850;Dbxref=Genbank:WP_011407506.1;Name=WP_011407506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157070.1;locus_tag=LLC55_RS02850;product=hypothetical protein;protein_id=WP_011407506.1;transl_table=11 NZ_CP086200.1 RefSeq gene 607469 607544 . + . ID=gene-LLC55_RS02855;Name=LLC55_RS02855;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS02855;old_locus_tag=LLC55_02855 NZ_CP086200.1 tRNAscan-SE tRNA 607469 607544 . + . ID=rna-LLC55_RS02855;Parent=gene-LLC55_RS02855;anticodon=(pos:607502..607504);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS02855;product=tRNA-Ile NZ_CP086200.1 tRNAscan-SE exon 607469 607544 . + . ID=exon-LLC55_RS02855-1;Parent=rna-LLC55_RS02855;anticodon=(pos:607502..607504);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS02855;product=tRNA-Ile NZ_CP086200.1 RefSeq gene 607614 608801 . - . ID=gene-LLC55_RS02860;Name=LLC55_RS02860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02860;old_locus_tag=LLC55_02860 NZ_CP086200.1 Protein Homology CDS 607614 608801 . - 0 ID=cds-WP_011407507.1;Parent=gene-LLC55_RS02860;Dbxref=Genbank:WP_011407507.1;Name=WP_011407507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038129.1;locus_tag=LLC55_RS02860;product=integrase;protein_id=WP_011407507.1;transl_table=11 NZ_CP086200.1 RefSeq gene 608801 609025 . - . ID=gene-LLC55_RS02865;Name=LLC55_RS02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02865;old_locus_tag=LLC55_02865 NZ_CP086200.1 Protein Homology CDS 608801 609025 . - 0 ID=cds-WP_024745954.1;Parent=gene-LLC55_RS02865;Dbxref=Genbank:WP_024745954.1;Name=WP_024745954.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174376.1;locus_tag=LLC55_RS02865;product=hypothetical protein;protein_id=WP_024745954.1;transl_table=11 NZ_CP086200.1 RefSeq gene 609022 609228 . - . ID=gene-LLC55_RS02870;Name=LLC55_RS02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02870;old_locus_tag=LLC55_02870 NZ_CP086200.1 Protein Homology CDS 609022 609228 . - 0 ID=cds-WP_011257520.1;Parent=gene-LLC55_RS02870;Dbxref=Genbank:WP_011257520.1;Name=WP_011257520.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408130.1;locus_tag=LLC55_RS02870;product=hypothetical protein;protein_id=WP_011257520.1;transl_table=11 NZ_CP086200.1 RefSeq gene 609225 609497 . - . ID=gene-LLC55_RS02875;Name=LLC55_RS02875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02875;old_locus_tag=LLC55_02875 NZ_CP086200.1 Protein Homology CDS 609225 609497 . - 0 ID=cds-WP_011257521.1;Parent=gene-LLC55_RS02875;Dbxref=Genbank:WP_011257521.1;Name=WP_011257521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408131.1;locus_tag=LLC55_RS02875;product=hypothetical protein;protein_id=WP_011257521.1;transl_table=11 NZ_CP086200.1 RefSeq gene 609494 609739 . - . ID=gene-LLC55_RS02880;Name=LLC55_RS02880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02880;old_locus_tag=LLC55_02880 NZ_CP086200.1 Protein Homology CDS 609494 609739 . - 0 ID=cds-WP_011407508.1;Parent=gene-LLC55_RS02880;Dbxref=Genbank:WP_011407508.1;Name=WP_011407508.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364111.1;locus_tag=LLC55_RS02880;product=hypothetical protein;protein_id=WP_011407508.1;transl_table=11 NZ_CP086200.1 RefSeq gene 609883 610011 . - . ID=gene-LLC55_RS02885;Name=LLC55_RS02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02885;old_locus_tag=LLC55_02885 NZ_CP086200.1 GeneMarkS-2+ CDS 609883 610011 . - 0 ID=cds-WP_011257523.1;Parent=gene-LLC55_RS02885;Dbxref=Genbank:WP_011257523.1;Name=WP_011257523.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS02885;product=AAA family ATPase;protein_id=WP_011257523.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 610222 611322 . + . ID=gene-LLC55_RS02890;Name=LLC55_RS02890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02890;old_locus_tag=LLC55_02890;pseudo=true NZ_CP086200.1 Protein Homology CDS 610222 611322 . + 0 ID=cds-LLC55_RS02890;Parent=gene-LLC55_RS02890;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS02890;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 611354 611494 . + . ID=gene-LLC55_RS02895;Name=LLC55_RS02895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02895;old_locus_tag=LLC55_02895;partial=true;pseudo=true;start_range=.,611354 NZ_CP086200.1 Protein Homology CDS 611354 611494 . + 0 ID=cds-LLC55_RS02895;Parent=gene-LLC55_RS02895;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006306,GO:0003677,GO:0008170;gbkey=CDS;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;go_process=DNA methylation|0006306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408155.1;locus_tag=LLC55_RS02895;partial=true;product=DNA methyltransferase;pseudo=true;start_range=.,611354;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 611675 612911 . - . ID=gene-LLC55_RS02900;Name=LLC55_RS02900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02900;old_locus_tag=LLC55_02900;pseudo=true NZ_CP086200.1 Protein Homology CDS 611675 612911 . - 0 ID=cds-LLC55_RS02900;Parent=gene-LLC55_RS02900;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS02900;product=ISL3-like element ISXoo13 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 612980 613369 . + . ID=gene-LLC55_RS02905;Name=LLC55_RS02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02905;old_locus_tag=LLC55_02905 NZ_CP086200.1 Protein Homology CDS 612980 613369 . + 0 ID=cds-WP_011407513.1;Parent=gene-LLC55_RS02905;Dbxref=Genbank:WP_011407513.1;Name=WP_011407513.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503162.1;locus_tag=LLC55_RS02905;product=hypothetical protein;protein_id=WP_011407513.1;transl_table=11 NZ_CP086200.1 RefSeq gene 613692 614657 . - . ID=gene-LLC55_RS02910;Name=LLC55_RS02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02910;old_locus_tag=LLC55_02910 NZ_CP086200.1 Protein Homology CDS 613692 614657 . - 0 ID=cds-WP_109181928.1-2;Parent=gene-LLC55_RS02910;Dbxref=Genbank:WP_109181928.1;Name=WP_109181928.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS02910;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181928.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 614745 615281 . - . ID=gene-LLC55_RS02915;Name=LLC55_RS02915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02915;old_locus_tag=LLC55_02915;partial=true;pseudo=true;start_range=.,614745 NZ_CP086200.1 Protein Homology CDS 614745 615281 . - 0 ID=cds-LLC55_RS02915;Parent=gene-LLC55_RS02915;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS02915;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,614745;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 615377 615666 . + . ID=gene-LLC55_RS02920;Name=LLC55_RS02920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02920;old_locus_tag=LLC55_02920;partial=true;pseudo=true;start_range=.,615377 NZ_CP086200.1 Protein Homology CDS 615377 615666 . + 0 ID=cds-LLC55_RS02920;Parent=gene-LLC55_RS02920;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612184.1;locus_tag=LLC55_RS02920;partial=true;product=integrase core domain-containing protein;pseudo=true;start_range=.,615377;transl_table=11 NZ_CP086200.1 RefSeq gene 615896 616618 . + . ID=gene-LLC55_RS02925;Name=LLC55_RS02925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02925;old_locus_tag=LLC55_02925 NZ_CP086200.1 Protein Homology CDS 615896 616618 . + 0 ID=cds-WP_011407516.1;Parent=gene-LLC55_RS02925;Dbxref=Genbank:WP_011407516.1;Name=WP_011407516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489275.1;locus_tag=LLC55_RS02925;product=ABC transporter ATP-binding protein;protein_id=WP_011407516.1;transl_table=11 NZ_CP086200.1 RefSeq gene 616629 618065 . + . ID=gene-LLC55_RS02930;Name=LLC55_RS02930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02930;old_locus_tag=LLC55_02930 NZ_CP086200.1 Protein Homology CDS 616629 618065 . + 0 ID=cds-WP_027703875.1;Parent=gene-LLC55_RS02930;Dbxref=Genbank:WP_027703875.1;Name=WP_027703875.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900947.1;locus_tag=LLC55_RS02930;product=DUF3526 domain-containing protein;protein_id=WP_027703875.1;transl_table=11 NZ_CP086200.1 RefSeq gene 618065 619333 . + . ID=gene-LLC55_RS02935;Name=LLC55_RS02935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02935;old_locus_tag=LLC55_02935 NZ_CP086200.1 Protein Homology CDS 618065 619333 . + 0 ID=cds-WP_011407518.1;Parent=gene-LLC55_RS02935;Dbxref=Genbank:WP_011407518.1;Name=WP_011407518.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911318.1;locus_tag=LLC55_RS02935;product=DUF3526 domain-containing protein;protein_id=WP_011407518.1;transl_table=11 NZ_CP086200.1 RefSeq gene 619423 621564 . + . ID=gene-LLC55_RS02940;Name=LLC55_RS02940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02940;old_locus_tag=LLC55_02940 NZ_CP086200.1 Protein Homology CDS 619423 621564 . + 0 ID=cds-WP_011407519.1;Parent=gene-LLC55_RS02940;Dbxref=Genbank:WP_011407519.1;Name=WP_011407519.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore-iron transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379725.1;locus_tag=LLC55_RS02940;product=TonB-dependent siderophore receptor;protein_id=WP_011407519.1;transl_table=11 NZ_CP086200.1 RefSeq gene 621649 622314 . - . ID=gene-LLC55_RS02945;Name=LLC55_RS02945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02945;old_locus_tag=LLC55_02945 NZ_CP086200.1 Protein Homology CDS 621649 622314 . - 0 ID=cds-WP_011407520.1;Parent=gene-LLC55_RS02945;Dbxref=Genbank:WP_011407520.1;Name=WP_011407520.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257530.1;locus_tag=LLC55_RS02945;product=DUF2894 domain-containing protein;protein_id=WP_011407520.1;transl_table=11 NZ_CP086200.1 RefSeq gene 622311 622985 . - . ID=gene-LLC55_RS02950;Name=LLC55_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02950;old_locus_tag=LLC55_02950 NZ_CP086200.1 Protein Homology CDS 622311 622985 . - 0 ID=cds-WP_011257531.1;Parent=gene-LLC55_RS02950;Dbxref=Genbank:WP_011257531.1;Name=WP_011257531.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911315.1;locus_tag=LLC55_RS02950;product=OmpA family protein;protein_id=WP_011257531.1;transl_table=11 NZ_CP086200.1 RefSeq gene 622982 625639 . - . ID=gene-LLC55_RS02955;Name=LLC55_RS02955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02955;old_locus_tag=LLC55_02955 NZ_CP086200.1 Protein Homology CDS 622982 625639 . - 0 ID=cds-WP_011407521.1;Parent=gene-LLC55_RS02955;Dbxref=Genbank:WP_011407521.1;Name=WP_011407521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407521.1;locus_tag=LLC55_RS02955;product=DUF802 domain-containing protein;protein_id=WP_011407521.1;transl_table=11 NZ_CP086200.1 RefSeq gene 625650 626387 . - . ID=gene-LLC55_RS02960;Name=LLC55_RS02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02960;old_locus_tag=LLC55_02960 NZ_CP086200.1 Protein Homology CDS 625650 626387 . - 0 ID=cds-WP_012443985.1;Parent=gene-LLC55_RS02960;Dbxref=Genbank:WP_012443985.1;Name=WP_012443985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301270.1;locus_tag=LLC55_RS02960;product=DUF3348 domain-containing protein;protein_id=WP_012443985.1;transl_table=11 NZ_CP086200.1 RefSeq gene 626726 626938 . + . ID=gene-LLC55_RS02965;Name=LLC55_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02965;old_locus_tag=LLC55_02965 NZ_CP086200.1 Protein Homology CDS 626726 626938 . + 0 ID=cds-WP_011257534.1;Parent=gene-LLC55_RS02965;Dbxref=Genbank:WP_011257534.1;Name=WP_011257534.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577678.1;locus_tag=LLC55_RS02965;product=hypothetical protein;protein_id=WP_011257534.1;transl_table=11 NZ_CP086200.1 RefSeq gene 627387 627608 . - . ID=gene-LLC55_RS02970;Name=LLC55_RS02970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02970;old_locus_tag=LLC55_02970 NZ_CP086200.1 Protein Homology CDS 627387 627608 . - 0 ID=cds-WP_011257535.1;Parent=gene-LLC55_RS02970;Dbxref=Genbank:WP_011257535.1;Name=WP_011257535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365365.1;locus_tag=LLC55_RS02970;product=hypothetical protein;protein_id=WP_011257535.1;transl_table=11 NZ_CP086200.1 RefSeq gene 627618 627932 . - . ID=gene-LLC55_RS02975;Name=LLC55_RS02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02975;old_locus_tag=LLC55_02975 NZ_CP086200.1 Protein Homology CDS 627618 627932 . - 0 ID=cds-WP_075239431.1;Parent=gene-LLC55_RS02975;Dbxref=Genbank:WP_075239431.1;Name=WP_075239431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157400.1;locus_tag=LLC55_RS02975;product=YkgJ family cysteine cluster protein;protein_id=WP_075239431.1;transl_table=11 NZ_CP086200.1 RefSeq gene 628324 628488 . + . ID=gene-LLC55_RS02980;Name=LLC55_RS02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02980;old_locus_tag=LLC55_02980 NZ_CP086200.1 Protein Homology CDS 628324 628488 . + 0 ID=cds-WP_011257537.1;Parent=gene-LLC55_RS02980;Dbxref=Genbank:WP_011257537.1;Name=WP_011257537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577683.1;locus_tag=LLC55_RS02980;product=hypothetical protein;protein_id=WP_011257537.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 628573 629271 . - . ID=gene-LLC55_RS02985;Name=LLC55_RS02985;end_range=629271,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02985;old_locus_tag=LLC55_02985;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 628573 629271 . - 0 ID=cds-LLC55_RS02985;Parent=gene-LLC55_RS02985;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=629271,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849560.1;locus_tag=LLC55_RS02985;partial=true;product=zinc-binding dehydrogenase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 629411 629503 . + . ID=gene-LLC55_RS02990;Name=LLC55_RS02990;end_range=629503,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS02990;old_locus_tag=LLC55_02990;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 629411 629503 . + 0 ID=cds-LLC55_RS02990;Parent=gene-LLC55_RS02990;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=629503,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS02990;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 629576 630374 . - . ID=gene-LLC55_RS02995;Name=LLC55_RS02995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS02995;old_locus_tag=LLC55_02995 NZ_CP086200.1 Protein Homology CDS 630103 630374 . - 0 ID=cds-WP_094187728.1;Parent=gene-LLC55_RS02995;Dbxref=Genbank:WP_094187728.1;Name=WP_094187728.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS02995;product=IS5 family transposase;protein_id=WP_094187728.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 629576 630104 . - 1 ID=cds-WP_094187728.1;Parent=gene-LLC55_RS02995;Dbxref=Genbank:WP_094187728.1;Name=WP_094187728.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS02995;product=IS5 family transposase;protein_id=WP_094187728.1;transl_table=11 NZ_CP086200.1 RefSeq gene 630459 631475 . - . ID=gene-LLC55_RS03000;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=LLC55_RS03000;old_locus_tag=LLC55_03000 NZ_CP086200.1 Protein Homology CDS 630459 631475 . - 0 ID=cds-WP_011407525.1;Parent=gene-LLC55_RS03000;Dbxref=Genbank:WP_011407525.1;Name=WP_011407525.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydB;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051953.1;locus_tag=LLC55_RS03000;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_011407525.1;transl_table=11 NZ_CP086200.1 RefSeq gene 631466 632875 . - . ID=gene-LLC55_RS03005;Name=LLC55_RS03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03005;old_locus_tag=LLC55_03005 NZ_CP086200.1 Protein Homology CDS 631466 632875 . - 0 ID=cds-WP_011407526.1;Parent=gene-LLC55_RS03005;Dbxref=Genbank:WP_011407526.1;Name=WP_011407526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504776.1;locus_tag=LLC55_RS03005;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_011407526.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 633178 633458 . - . ID=gene-LLC55_RS03010;Name=LLC55_RS03010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03010;old_locus_tag=LLC55_03010;pseudo=true NZ_CP086200.1 Protein Homology CDS 633178 633458 . - 0 ID=cds-LLC55_RS03010;Parent=gene-LLC55_RS03010;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157410.1;locus_tag=LLC55_RS03010;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 633992 635272 . + . ID=gene-LLC55_RS03015;Name=LLC55_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03015;old_locus_tag=LLC55_03015 NZ_CP086200.1 Protein Homology CDS 633992 635272 . + 0 ID=cds-WP_011407527.1;Parent=gene-LLC55_RS03015;Dbxref=Genbank:WP_011407527.1;Name=WP_011407527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117241.1;locus_tag=LLC55_RS03015;product=sigma-54 dependent transcriptional regulator;protein_id=WP_011407527.1;transl_table=11 NZ_CP086200.1 RefSeq gene 635272 635538 . + . ID=gene-LLC55_RS03020;Name=LLC55_RS03020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03020;old_locus_tag=LLC55_03020 NZ_CP086200.1 Protein Homology CDS 635272 635538 . + 0 ID=cds-WP_011257545.1;Parent=gene-LLC55_RS03020;Dbxref=Genbank:WP_011257545.1;Name=WP_011257545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257545.1;locus_tag=LLC55_RS03020;product=hypothetical protein;protein_id=WP_011257545.1;transl_table=11 NZ_CP086200.1 RefSeq gene 635507 635887 . - . ID=gene-LLC55_RS03025;Name=LLC55_RS03025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03025;old_locus_tag=LLC55_03025 NZ_CP086200.1 Protein Homology CDS 635507 635887 . - 0 ID=cds-WP_011257546.1;Parent=gene-LLC55_RS03025;Dbxref=Genbank:WP_011257546.1;Name=WP_011257546.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157413.1;locus_tag=LLC55_RS03025;product=response regulator;protein_id=WP_011257546.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 636113 637489 . + . ID=gene-LLC55_RS03030;Name=LLC55_RS03030;end_range=637489,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03030;old_locus_tag=LLC55_03030;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 636113 637489 . + 0 ID=cds-LLC55_RS03030;Parent=gene-LLC55_RS03030;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=637489,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114624.1;locus_tag=LLC55_RS03030;partial=true;product=methyltransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 637749 637883 . + . ID=gene-LLC55_RS23430;Name=LLC55_RS23430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23430 NZ_CP086200.1 GeneMarkS-2+ CDS 637749 637883 . + 0 ID=cds-WP_014504770.1;Parent=gene-LLC55_RS23430;Dbxref=Genbank:WP_014504770.1;Name=WP_014504770.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23430;product=hypothetical protein;protein_id=WP_014504770.1;transl_table=11 NZ_CP086200.1 RefSeq gene 638192 639406 . - . ID=gene-LLC55_RS03035;Name=LLC55_RS03035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03035;old_locus_tag=LLC55_03035 NZ_CP086200.1 Protein Homology CDS 638192 639406 . - 0 ID=cds-WP_024710469.1;Parent=gene-LLC55_RS03035;Dbxref=Genbank:WP_024710469.1;Name=WP_024710469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301250.1;locus_tag=LLC55_RS03035;product=FAD-dependent oxidoreductase;protein_id=WP_024710469.1;transl_table=11 NZ_CP086200.1 RefSeq gene 639717 641012 . + . ID=gene-LLC55_RS03040;Name=LLC55_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03040;old_locus_tag=LLC55_03040 NZ_CP086200.1 Protein Homology CDS 639717 641012 . + 0 ID=cds-WP_178383142.1;Parent=gene-LLC55_RS03040;Dbxref=Genbank:WP_178383142.1;Name=WP_178383142.1;Ontology_term=GO:0000160,GO:0000155,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157420.1;locus_tag=LLC55_RS03040;product=histidine kinase;protein_id=WP_178383142.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 641009 641793 . + . ID=gene-LLC55_RS03045;Name=LLC55_RS03045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03045;old_locus_tag=LLC55_03045;pseudo=true NZ_CP086200.1 Protein Homology CDS 641009 641793 . + 0 ID=cds-LLC55_RS03045;Parent=gene-LLC55_RS03045;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038759.1;locus_tag=LLC55_RS03045;product=LytTR family DNA-binding domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 641967 642328 . + . ID=gene-LLC55_RS03050;Name=LLC55_RS03050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03050;old_locus_tag=LLC55_03050;pseudo=true NZ_CP086200.1 Protein Homology CDS 641967 642328 . + 0 ID=cds-LLC55_RS03050;Parent=gene-LLC55_RS03050;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157422.1;locus_tag=LLC55_RS03050;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 642492 644087 . + . ID=gene-LLC55_RS03055;Name=LLC55_RS03055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03055;old_locus_tag=LLC55_03055 NZ_CP086200.1 Protein Homology CDS 642492 644087 . + 0 ID=cds-WP_011407535.1;Parent=gene-LLC55_RS03055;Dbxref=Genbank:WP_011407535.1;Name=WP_011407535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803093.1;locus_tag=LLC55_RS03055;product=APC family permease;protein_id=WP_011407535.1;transl_table=11 NZ_CP086200.1 RefSeq gene 644225 644301 . + . ID=gene-LLC55_RS03060;Name=LLC55_RS03060;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS03060;old_locus_tag=LLC55_03060 NZ_CP086200.1 cmsearch ncRNA 644225 644301 . + . ID=rna-LLC55_RS03060;Parent=gene-LLC55_RS03060;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03060;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 644225 644301 . + . ID=exon-LLC55_RS03060-1;Parent=rna-LLC55_RS03060;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03060;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 644419 645018 . - . ID=gene-LLC55_RS03065;Name=LLC55_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03065;old_locus_tag=LLC55_03065 NZ_CP086200.1 Protein Homology CDS 644419 645018 . - 0 ID=cds-WP_024744174.1;Parent=gene-LLC55_RS03065;Dbxref=Genbank:WP_024744174.1;Name=WP_024744174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118539.1;locus_tag=LLC55_RS03065;product=hypothetical protein;protein_id=WP_024744174.1;transl_table=11 NZ_CP086200.1 RefSeq gene 645635 646492 . + . ID=gene-LLC55_RS03070;Name=LLC55_RS03070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03070;old_locus_tag=LLC55_03070 NZ_CP086200.1 Protein Homology CDS 645635 646492 . + 0 ID=cds-WP_011407537.1;Parent=gene-LLC55_RS03070;Dbxref=Genbank:WP_011407537.1;Name=WP_011407537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407537.1;locus_tag=LLC55_RS03070;product=oxygenase MpaB family protein;protein_id=WP_011407537.1;transl_table=11 NZ_CP086200.1 RefSeq gene 646831 648900 . - . ID=gene-LLC55_RS03075;Name=LLC55_RS03075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03075;old_locus_tag=LLC55_03075 NZ_CP086200.1 Protein Homology CDS 646831 648900 . - 0 ID=cds-WP_069960290.1;Parent=gene-LLC55_RS03075;Dbxref=Genbank:WP_069960290.1;Name=WP_069960290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167581.1;locus_tag=LLC55_RS03075;product=M13 family metallopeptidase;protein_id=WP_069960290.1;transl_table=11 NZ_CP086200.1 RefSeq gene 649051 649746 . - . ID=gene-LLC55_RS03080;Name=LLC55_RS03080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03080;old_locus_tag=LLC55_03080 NZ_CP086200.1 Protein Homology CDS 649051 649746 . - 0 ID=cds-WP_075242199.1;Parent=gene-LLC55_RS03080;Dbxref=Genbank:WP_075242199.1;Name=WP_075242199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573318.1;locus_tag=LLC55_RS03080;product=glycosyltransferase;protein_id=WP_075242199.1;transl_table=11 NZ_CP086200.1 RefSeq gene 649775 649963 . + . ID=gene-LLC55_RS03085;Name=LLC55_RS03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03085;old_locus_tag=LLC55_03085 NZ_CP086200.1 Protein Homology CDS 649775 649963 . + 0 ID=cds-WP_033013160.1;Parent=gene-LLC55_RS03085;Dbxref=Genbank:WP_033013160.1;Name=WP_033013160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504758.1;locus_tag=LLC55_RS03085;product=hypothetical protein;protein_id=WP_033013160.1;transl_table=11 NZ_CP086200.1 RefSeq gene 649987 650982 . - . ID=gene-LLC55_RS03090;Name=LLC55_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03090;old_locus_tag=LLC55_03090 NZ_CP086200.1 Protein Homology CDS 649987 650982 . - 0 ID=cds-WP_011407539.1;Parent=gene-LLC55_RS03090;Dbxref=Genbank:WP_011407539.1;Name=WP_011407539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972965.1;locus_tag=LLC55_RS03090;product=aldo/keto reductase;protein_id=WP_011407539.1;transl_table=11 NZ_CP086200.1 RefSeq gene 651122 651691 . - . ID=gene-LLC55_RS03095;Name=LLC55_RS03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03095;old_locus_tag=LLC55_03095 NZ_CP086200.1 Protein Homology CDS 651122 651691 . - 0 ID=cds-WP_011257563.1;Parent=gene-LLC55_RS03095;Dbxref=Genbank:WP_011257563.1;Name=WP_011257563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009588901.1;locus_tag=LLC55_RS03095;product=flavodoxin family protein;protein_id=WP_011257563.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 651807 652082 . + . ID=gene-LLC55_RS03100;Name=LLC55_RS03100;end_range=652082,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03100;old_locus_tag=LLC55_03100;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 651807 652082 . + 0 ID=cds-LLC55_RS03100;Parent=gene-LLC55_RS03100;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=652082,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301238.1;locus_tag=LLC55_RS03100;partial=true;product=DoxX family membrane protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 652183 653001 . + . ID=gene-LLC55_RS03105;Name=LLC55_RS03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03105;old_locus_tag=LLC55_03105 NZ_CP086200.1 Protein Homology CDS 652183 653001 . + 0 ID=cds-WP_011407542.1;Parent=gene-LLC55_RS03105;Dbxref=Genbank:WP_011407542.1;Name=WP_011407542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489595.1;locus_tag=LLC55_RS03105;product=class III extradiol ring-cleavage dioxygenase;protein_id=WP_011407542.1;transl_table=11 NZ_CP086200.1 RefSeq gene 653199 654443 . + . ID=gene-LLC55_RS03110;Name=LLC55_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03110;old_locus_tag=LLC55_03110 NZ_CP086200.1 Protein Homology CDS 653199 654443 . + 0 ID=cds-WP_048483685.1;Parent=gene-LLC55_RS03110;Dbxref=Genbank:WP_048483685.1;Name=WP_048483685.1;Ontology_term=GO:0051539,GO:1904047;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167194.1;locus_tag=LLC55_RS03110;product=putative DNA modification/repair radical SAM protein;protein_id=WP_048483685.1;transl_table=11 NZ_CP086200.1 RefSeq gene 654450 655898 . + . ID=gene-LLC55_RS03115;Name=LLC55_RS03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03115;old_locus_tag=LLC55_03115 NZ_CP086200.1 Protein Homology CDS 654450 655898 . + 0 ID=cds-WP_044757123.1;Parent=gene-LLC55_RS03115;Dbxref=Genbank:WP_044757123.1;Name=WP_044757123.1;Note=This protein belongs to the uracil DNA glycosylase superfamily%2C members of which act in excision repair of DNA. However%2C it belongs more specifically to UdgX branch%2C whose founding member was found to bind uracil in DNA (where it does not belong)%2C without cleaving it%2C appears to promote DNA repair by a pathway involving RecA%2C rather than base excision.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365450.1;locus_tag=LLC55_RS03115;product=UdgX family uracil-DNA binding protein;protein_id=WP_044757123.1;transl_table=11 NZ_CP086200.1 RefSeq gene 656130 656206 . + . ID=gene-LLC55_RS03120;Name=LLC55_RS03120;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS03120;old_locus_tag=LLC55_03120 NZ_CP086200.1 cmsearch ncRNA 656130 656206 . + . ID=rna-LLC55_RS03120;Parent=gene-LLC55_RS03120;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03120;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 656130 656206 . + . ID=exon-LLC55_RS03120-1;Parent=rna-LLC55_RS03120;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03120;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 656538 657095 . - . ID=gene-LLC55_RS03125;Name=LLC55_RS03125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03125;old_locus_tag=LLC55_03125 NZ_CP086200.1 Protein Homology CDS 656538 657095 . - 0 ID=cds-WP_011407544.1;Parent=gene-LLC55_RS03125;Dbxref=Genbank:WP_011407544.1;Name=WP_011407544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489588.1;locus_tag=LLC55_RS03125;product=fasciclin domain-containing protein;protein_id=WP_011407544.1;transl_table=11 NZ_CP086200.1 RefSeq gene 657493 658128 . + . ID=gene-LLC55_RS03130;Name=LLC55_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03130;old_locus_tag=LLC55_03130 NZ_CP086200.1 GeneMarkS-2+ CDS 657493 658128 . + 0 ID=cds-WP_228329679.1;Parent=gene-LLC55_RS03130;Dbxref=Genbank:WP_228329679.1;Name=WP_228329679.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS03130;product=hypothetical protein;protein_id=WP_228329679.1;transl_table=11 NZ_CP086200.1 RefSeq gene 658603 660240 . + . ID=gene-LLC55_RS03135;Name=LLC55_RS03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03135;old_locus_tag=LLC55_03135 NZ_CP086200.1 Protein Homology CDS 658603 660240 . + 0 ID=cds-WP_011257573.1;Parent=gene-LLC55_RS03135;Dbxref=Genbank:WP_011257573.1;Name=WP_011257573.1;Ontology_term=GO:0006814,GO:0006885,GO:1902600,GO:0015385;gbkey=CDS;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504747.1;locus_tag=LLC55_RS03135;product=Na+/H+ antiporter;protein_id=WP_011257573.1;transl_table=11 NZ_CP086200.1 RefSeq gene 660487 661431 . + . ID=gene-LLC55_RS03140;Name=LLC55_RS03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03140;old_locus_tag=LLC55_03140 NZ_CP086200.1 Protein Homology CDS 660487 661431 . + 0 ID=cds-WP_011407547.1;Parent=gene-LLC55_RS03140;Dbxref=Genbank:WP_011407547.1;Name=WP_011407547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448573.1;locus_tag=LLC55_RS03140;product=ABC transporter ATP-binding protein;protein_id=WP_011407547.1;transl_table=11 NZ_CP086200.1 RefSeq gene 661428 662189 . + . ID=gene-LLC55_RS03145;Name=LLC55_RS03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03145;old_locus_tag=LLC55_03145 NZ_CP086200.1 Protein Homology CDS 661428 662189 . + 0 ID=cds-WP_027703259.1;Parent=gene-LLC55_RS03145;Dbxref=Genbank:WP_027703259.1;Name=WP_027703259.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157438.1;locus_tag=LLC55_RS03145;product=ABC transporter permease;protein_id=WP_027703259.1;transl_table=11 NZ_CP086200.1 RefSeq gene 662603 662869 . - . ID=gene-LLC55_RS03150;Name=LLC55_RS03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03150;old_locus_tag=LLC55_03150 NZ_CP086200.1 Protein Homology CDS 662603 662869 . - 0 ID=cds-WP_011407549.1;Parent=gene-LLC55_RS03150;Dbxref=Genbank:WP_011407549.1;Name=WP_011407549.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038741.1;locus_tag=LLC55_RS03150;product=DUF3297 family protein;protein_id=WP_011407549.1;transl_table=11 NZ_CP086200.1 RefSeq gene 663035 663571 . + . ID=gene-LLC55_RS03155;Name=LLC55_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03155;old_locus_tag=LLC55_03155 NZ_CP086200.1 Protein Homology CDS 663035 663571 . + 0 ID=cds-WP_011407550.1;Parent=gene-LLC55_RS03155;Dbxref=Genbank:WP_011407550.1;Name=WP_011407550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379770.1;locus_tag=LLC55_RS03155;product=hypothetical protein;protein_id=WP_011407550.1;transl_table=11 NZ_CP086200.1 RefSeq gene 663700 665562 . - . ID=gene-LLC55_RS03160;Name=LLC55_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03160;old_locus_tag=LLC55_03160 NZ_CP086200.1 Protein Homology CDS 663700 665562 . - 0 ID=cds-WP_228329733.1;Parent=gene-LLC55_RS03160;Dbxref=Genbank:WP_228329733.1;Name=WP_228329733.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504743.1;locus_tag=LLC55_RS03160;product=S8 family peptidase;protein_id=WP_228329733.1;transl_table=11 NZ_CP086200.1 RefSeq gene 665654 668623 . - . ID=gene-LLC55_RS03165;Name=LLC55_RS03165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03165;old_locus_tag=LLC55_03165 NZ_CP086200.1 Protein Homology CDS 665654 668623 . - 0 ID=cds-WP_044757121.1;Parent=gene-LLC55_RS03165;Dbxref=Genbank:WP_044757121.1;Name=WP_044757121.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113609.1;locus_tag=LLC55_RS03165;product=YadA-like family protein;protein_id=WP_044757121.1;transl_table=11 NZ_CP086200.1 RefSeq gene 668505 670202 . + . ID=gene-LLC55_RS03170;Name=LLC55_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03170;old_locus_tag=LLC55_03170 NZ_CP086200.1 Protein Homology CDS 668505 670202 . + 0 ID=cds-WP_228329680.1;Parent=gene-LLC55_RS03170;Dbxref=Genbank:WP_228329680.1;Name=WP_228329680.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407553.1;locus_tag=LLC55_RS03170;product=ATP-binding protein;protein_id=WP_228329680.1;transl_table=11 NZ_CP086200.1 RefSeq gene 670184 670912 . - . ID=gene-LLC55_RS03175;Name=LLC55_RS03175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03175;old_locus_tag=LLC55_03175 NZ_CP086200.1 Protein Homology CDS 670184 670912 . - 0 ID=cds-WP_011257581.1;Parent=gene-LLC55_RS03175;Dbxref=Genbank:WP_011257581.1;Name=WP_011257581.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302989.1;locus_tag=LLC55_RS03175;product=response regulator transcription factor;protein_id=WP_011257581.1;transl_table=11 NZ_CP086200.1 RefSeq gene 671088 671372 . - . ID=gene-LLC55_RS03180;Name=LLC55_RS03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03180;old_locus_tag=LLC55_03180 NZ_CP086200.1 Protein Homology CDS 671088 671372 . - 0 ID=cds-WP_011257582.1;Parent=gene-LLC55_RS03180;Dbxref=Genbank:WP_011257582.1;Name=WP_011257582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504739.1;locus_tag=LLC55_RS03180;product=DUF4031 domain-containing protein;protein_id=WP_011257582.1;transl_table=11 NZ_CP086200.1 RefSeq gene 671381 671947 . - . ID=gene-LLC55_RS03185;Name=LLC55_RS03185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03185;old_locus_tag=LLC55_03185 NZ_CP086200.1 Protein Homology CDS 671381 671947 . - 0 ID=cds-WP_011257583.1;Parent=gene-LLC55_RS03185;Dbxref=Genbank:WP_011257583.1;Name=WP_011257583.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257583.1;locus_tag=LLC55_RS03185;product=hypothetical protein;protein_id=WP_011257583.1;transl_table=11 NZ_CP086200.1 RefSeq gene 672139 672216 . + . ID=gene-LLC55_RS03190;Name=LLC55_RS03190;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS03190;old_locus_tag=LLC55_03190 NZ_CP086200.1 cmsearch ncRNA 672139 672216 . + . ID=rna-LLC55_RS03190;Parent=gene-LLC55_RS03190;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03190;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 672139 672216 . + . ID=exon-LLC55_RS03190-1;Parent=rna-LLC55_RS03190;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03190;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 672334 673467 . - . ID=gene-LLC55_RS03195;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=LLC55_RS03195;old_locus_tag=LLC55_03195 NZ_CP086200.1 Protein Homology CDS 672334 673467 . - 0 ID=cds-WP_011257584.1;Parent=gene-LLC55_RS03195;Dbxref=Genbank:WP_011257584.1;Name=WP_011257584.1;gbkey=CDS;gene=motB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911263.1;locus_tag=LLC55_RS03195;product=flagellar motor protein MotB;protein_id=WP_011257584.1;transl_table=11 NZ_CP086200.1 RefSeq gene 673478 674332 . - . ID=gene-LLC55_RS03200;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=LLC55_RS03200;old_locus_tag=LLC55_03200 NZ_CP086200.1 Protein Homology CDS 673478 674332 . - 0 ID=cds-WP_008573335.1;Parent=gene-LLC55_RS03200;Dbxref=Genbank:WP_008573335.1;Name=WP_008573335.1;gbkey=CDS;gene=motA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303316.1;locus_tag=LLC55_RS03200;product=flagellar motor stator protein MotA;protein_id=WP_008573335.1;transl_table=11 NZ_CP086200.1 RefSeq gene 674430 674921 . - . ID=gene-LLC55_RS03205;Name=LLC55_RS03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03205;old_locus_tag=LLC55_03205 NZ_CP086200.1 Protein Homology CDS 674430 674921 . - 0 ID=cds-WP_075242181.1;Parent=gene-LLC55_RS03205;Dbxref=Genbank:WP_075242181.1;Name=WP_075242181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157444.1;locus_tag=LLC55_RS03205;product=MliC family protein;protein_id=WP_075242181.1;transl_table=11 NZ_CP086200.1 RefSeq gene 675227 675691 . - . ID=gene-LLC55_RS03210;Name=msrB;gbkey=Gene;gene=msrB;gene_biotype=protein_coding;locus_tag=LLC55_RS03210;old_locus_tag=LLC55_03210 NZ_CP086200.1 Protein Homology CDS 675227 675691 . - 0 ID=cds-WP_011257586.1;Parent=gene-LLC55_RS03210;Dbxref=Genbank:WP_011257586.1;Name=WP_011257586.1;Ontology_term=GO:0006979,GO:0030091,GO:0033743;gbkey=CDS;gene=msrB;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489131.1;locus_tag=LLC55_RS03210;product=peptide-methionine (R)-S-oxide reductase MsrB;protein_id=WP_011257586.1;transl_table=11 NZ_CP086200.1 RefSeq gene 675972 676397 . + . ID=gene-LLC55_RS03215;Name=LLC55_RS03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03215;old_locus_tag=LLC55_03215 NZ_CP086200.1 Protein Homology CDS 675972 676397 . + 0 ID=cds-WP_044757538.1;Parent=gene-LLC55_RS03215;Dbxref=Genbank:WP_044757538.1;Name=WP_044757538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157446.1;locus_tag=LLC55_RS03215;product=hypothetical protein;protein_id=WP_044757538.1;transl_table=11 NZ_CP086200.1 RefSeq gene 676449 676928 . - . ID=gene-LLC55_RS03220;Name=LLC55_RS03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03220;old_locus_tag=LLC55_03220 NZ_CP086200.1 Protein Homology CDS 676449 676928 . - 0 ID=cds-WP_011257588.1;Parent=gene-LLC55_RS03220;Dbxref=Genbank:WP_011257588.1;Name=WP_011257588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166392.1;locus_tag=LLC55_RS03220;product=Lrp/AsnC ligand binding domain-containing protein;protein_id=WP_011257588.1;transl_table=11 NZ_CP086200.1 RefSeq gene 677077 678366 . + . ID=gene-LLC55_RS03225;Name=LLC55_RS03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03225;old_locus_tag=LLC55_03225 NZ_CP086200.1 Protein Homology CDS 677077 678366 . + 0 ID=cds-WP_069959719.1;Parent=gene-LLC55_RS03225;Dbxref=Genbank:WP_069959719.1;Name=WP_069959719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963042.1;locus_tag=LLC55_RS03225;product=D-amino acid dehydrogenase;protein_id=WP_069959719.1;transl_table=11 NZ_CP086200.1 RefSeq gene 678366 679466 . + . ID=gene-LLC55_RS03230;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=LLC55_RS03230;old_locus_tag=LLC55_03230 NZ_CP086200.1 Protein Homology CDS 678366 679466 . + 0 ID=cds-WP_069959720.1;Parent=gene-LLC55_RS03230;Dbxref=Genbank:WP_069959720.1;Name=WP_069959720.1;Ontology_term=GO:0009252,GO:0008784;gbkey=CDS;gene=alr;go_function=alanine racemase activity|0008784||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504732.1;locus_tag=LLC55_RS03230;product=alanine racemase;protein_id=WP_069959720.1;transl_table=11 NZ_CP086200.1 RefSeq gene 679869 680450 . - . ID=gene-LLC55_RS03235;Name=LLC55_RS03235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03235;old_locus_tag=LLC55_03235 NZ_CP086200.1 Protein Homology CDS 679869 680450 . - 0 ID=cds-WP_011407557.1;Parent=gene-LLC55_RS03235;Dbxref=Genbank:WP_011407557.1;Name=WP_011407557.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992142.1;locus_tag=LLC55_RS03235;product=DUF3016 domain-containing protein;protein_id=WP_011407557.1;transl_table=11 NZ_CP086200.1 RefSeq gene 680699 681145 . + . ID=gene-LLC55_RS03240;Name=LLC55_RS03240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03240;old_locus_tag=LLC55_03240 NZ_CP086200.1 Protein Homology CDS 680699 681145 . + 0 ID=cds-WP_042465447.1;Parent=gene-LLC55_RS03240;Dbxref=Genbank:WP_042465447.1;Name=WP_042465447.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372107.1;locus_tag=LLC55_RS03240;product=hypothetical protein;protein_id=WP_042465447.1;transl_table=11 NZ_CP086200.1 RefSeq gene 681132 681440 . + . ID=gene-LLC55_RS03245;Name=LLC55_RS03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03245;old_locus_tag=LLC55_03245 NZ_CP086200.1 Protein Homology CDS 681132 681440 . + 0 ID=cds-WP_011407559.1;Parent=gene-LLC55_RS03245;Dbxref=Genbank:WP_011407559.1;Name=WP_011407559.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407559.1;locus_tag=LLC55_RS03245;product=hypothetical protein;protein_id=WP_011407559.1;transl_table=11 NZ_CP086200.1 RefSeq gene 681527 683563 . + . ID=gene-LLC55_RS03250;Name=LLC55_RS03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03250;old_locus_tag=LLC55_03250 NZ_CP086200.1 Protein Homology CDS 681527 683563 . + 0 ID=cds-WP_042464467.1;Parent=gene-LLC55_RS03250;Dbxref=Genbank:WP_042464467.1;Name=WP_042464467.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157452.1;locus_tag=LLC55_RS03250;product=PAS domain-containing sensor histidine kinase;protein_id=WP_042464467.1;transl_table=11 NZ_CP086200.1 RefSeq gene 683844 683918 . + . ID=gene-LLC55_RS03255;Name=LLC55_RS03255;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS03255;old_locus_tag=LLC55_03255 NZ_CP086200.1 cmsearch ncRNA 683844 683918 . + . ID=rna-LLC55_RS03255;Parent=gene-LLC55_RS03255;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03255;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 683844 683918 . + . ID=exon-LLC55_RS03255-1;Parent=rna-LLC55_RS03255;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03255;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 684048 684356 . + . ID=gene-LLC55_RS03260;Name=LLC55_RS03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03260;old_locus_tag=LLC55_03260 NZ_CP086200.1 Protein Homology CDS 684048 684356 . + 0 ID=cds-WP_011407561.1;Parent=gene-LLC55_RS03260;Dbxref=Genbank:WP_011407561.1;Name=WP_011407561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911254.1;locus_tag=LLC55_RS03260;product=DUF3247 family protein;protein_id=WP_011407561.1;transl_table=11 NZ_CP086200.1 RefSeq gene 684445 685782 . + . ID=gene-LLC55_RS03265;Name=LLC55_RS03265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03265;old_locus_tag=LLC55_03265 NZ_CP086200.1 Protein Homology CDS 684445 685782 . + 0 ID=cds-WP_011407562.1;Parent=gene-LLC55_RS03265;Dbxref=Genbank:WP_011407562.1;Name=WP_011407562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922022.1;locus_tag=LLC55_RS03265;product=sorbosone dehydrogenase family protein;protein_id=WP_011407562.1;transl_table=11 NZ_CP086200.1 RefSeq gene 685787 685863 . - . ID=gene-LLC55_RS03270;Name=LLC55_RS03270;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS03270;old_locus_tag=LLC55_03270 NZ_CP086200.1 cmsearch ncRNA 685787 685863 . - . ID=rna-LLC55_RS03270;Parent=gene-LLC55_RS03270;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03270;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 685787 685863 . - . ID=exon-LLC55_RS03270-1;Parent=rna-LLC55_RS03270;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03270;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 686336 686581 . - . ID=gene-LLC55_RS03275;Name=LLC55_RS03275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03275;old_locus_tag=LLC55_03275 NZ_CP086200.1 Protein Homology CDS 686336 686581 . - 0 ID=cds-WP_024710498.1;Parent=gene-LLC55_RS03275;Dbxref=Genbank:WP_024710498.1;Name=WP_024710498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446155.1;locus_tag=LLC55_RS03275;product=hypothetical protein;protein_id=WP_024710498.1;transl_table=11 NZ_CP086200.1 RefSeq gene 686772 687839 . + . ID=gene-LLC55_RS03280;Name=LLC55_RS03280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03280;old_locus_tag=LLC55_03280 NZ_CP086200.1 Protein Homology CDS 686772 687839 . + 0 ID=cds-WP_011407565.1;Parent=gene-LLC55_RS03280;Dbxref=Genbank:WP_011407565.1;Name=WP_011407565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300358.1;locus_tag=LLC55_RS03280;product=class I SAM-dependent methyltransferase;protein_id=WP_011407565.1;transl_table=11 NZ_CP086200.1 RefSeq gene 687836 688549 . + . ID=gene-LLC55_RS03285;Name=LLC55_RS03285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03285;old_locus_tag=LLC55_03285 NZ_CP086200.1 Protein Homology CDS 687836 688549 . + 0 ID=cds-WP_069959721.1;Parent=gene-LLC55_RS03285;Dbxref=Genbank:WP_069959721.1;Name=WP_069959721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171645.1;locus_tag=LLC55_RS03285;product=16S rRNA pseudouridine(516) synthase;protein_id=WP_069959721.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 688546 689224 . + . ID=gene-LLC55_RS03290;Name=LLC55_RS03290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03290;old_locus_tag=LLC55_03290;pseudo=true NZ_CP086200.1 Protein Homology CDS 688546 689224 . + 0 ID=cds-LLC55_RS03290;Parent=gene-LLC55_RS03290;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304342.1;locus_tag=LLC55_RS03290;product=HAD family phosphatase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 689360 690166 . - . ID=gene-LLC55_RS03295;Name=LLC55_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03295;old_locus_tag=LLC55_03295 NZ_CP086200.1 Protein Homology CDS 689360 690166 . - 0 ID=cds-WP_011407568.1;Parent=gene-LLC55_RS03295;Dbxref=Genbank:WP_011407568.1;Name=WP_011407568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116655.1;locus_tag=LLC55_RS03295;product=SDR family oxidoreductase;protein_id=WP_011407568.1;transl_table=11 NZ_CP086200.1 RefSeq gene 690588 691148 . - . ID=gene-LLC55_RS03300;Name=LLC55_RS03300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03300;old_locus_tag=LLC55_03300 NZ_CP086200.1 Protein Homology CDS 690588 691148 . - 0 ID=cds-WP_011407569.1;Parent=gene-LLC55_RS03300;Dbxref=Genbank:WP_011407569.1;Name=WP_011407569.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157459.1;locus_tag=LLC55_RS03300;product=DUF1415 domain-containing protein;protein_id=WP_011407569.1;transl_table=11 NZ_CP086200.1 RefSeq gene 691307 692170 . - . ID=gene-LLC55_RS03305;Name=LLC55_RS03305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03305;old_locus_tag=LLC55_03305 NZ_CP086200.1 Protein Homology CDS 691307 692170 . - 0 ID=cds-WP_069963822.1;Parent=gene-LLC55_RS03305;Dbxref=Genbank:WP_069963822.1;Name=WP_069963822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372078.1;locus_tag=LLC55_RS03305;product=lysophospholipase;protein_id=WP_069963822.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 692157 693294 . - . ID=gene-LLC55_RS03310;Name=LLC55_RS03310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03310;old_locus_tag=LLC55_03310;pseudo=true NZ_CP086200.1 Protein Homology CDS 692157 693294 . - 0 ID=cds-LLC55_RS03310;Parent=gene-LLC55_RS03310;Note=frameshifted;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926812.1;locus_tag=LLC55_RS03310;product=response regulator;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 693290 693748 . - . ID=gene-LLC55_RS03315;Name=LLC55_RS03315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03315;old_locus_tag=LLC55_03315;partial=true;pseudo=true;start_range=.,693290 NZ_CP086200.1 Protein Homology CDS 693290 693748 . - 0 ID=cds-LLC55_RS03315;Parent=gene-LLC55_RS03315;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171646.1;locus_tag=LLC55_RS03315;partial=true;product=hypothetical protein;pseudo=true;start_range=.,693290;transl_table=11 NZ_CP086200.1 RefSeq gene 693894 694379 . - . ID=gene-LLC55_RS03320;Name=LLC55_RS03320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03320;old_locus_tag=LLC55_03320 NZ_CP086200.1 Protein Homology CDS 693894 694379 . - 0 ID=cds-WP_011257604.1;Parent=gene-LLC55_RS03320;Dbxref=Genbank:WP_011257604.1;Name=WP_011257604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300350.1;locus_tag=LLC55_RS03320;product=YajQ family cyclic di-GMP-binding protein;protein_id=WP_011257604.1;transl_table=11 NZ_CP086200.1 RefSeq gene 694487 695383 . + . ID=gene-LLC55_RS03325;Name=LLC55_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03325;old_locus_tag=LLC55_03325 NZ_CP086200.1 Protein Homology CDS 694487 695383 . + 0 ID=cds-WP_011407572.1;Parent=gene-LLC55_RS03325;Dbxref=Genbank:WP_011407572.1;Name=WP_011407572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348672.1;locus_tag=LLC55_RS03325;product=DMT family transporter;protein_id=WP_011407572.1;transl_table=11 NZ_CP086200.1 RefSeq gene 695502 696509 . + . ID=gene-LLC55_RS03330;Name=LLC55_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03330;old_locus_tag=LLC55_03330 NZ_CP086200.1 Protein Homology CDS 695502 696509 . + 0 ID=cds-WP_011407573.1;Parent=gene-LLC55_RS03330;Dbxref=Genbank:WP_011407573.1;Name=WP_011407573.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038713.1;locus_tag=LLC55_RS03330;product=methionine ABC transporter ATP-binding protein;protein_id=WP_011407573.1;transl_table=11 NZ_CP086200.1 RefSeq gene 696506 697201 . + . ID=gene-LLC55_RS03335;Name=LLC55_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03335;old_locus_tag=LLC55_03335 NZ_CP086200.1 Protein Homology CDS 696506 697201 . + 0 ID=cds-WP_011257607.1;Parent=gene-LLC55_RS03335;Dbxref=Genbank:WP_011257607.1;Name=WP_011257607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489185.1;locus_tag=LLC55_RS03335;product=ABC transporter permease;protein_id=WP_011257607.1;transl_table=11 NZ_CP086200.1 RefSeq gene 697296 698096 . + . ID=gene-LLC55_RS03340;Name=LLC55_RS03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03340;old_locus_tag=LLC55_03340 NZ_CP086200.1 Protein Homology CDS 697296 698096 . + 0 ID=cds-WP_011407574.1;Parent=gene-LLC55_RS03340;Dbxref=Genbank:WP_011407574.1;Name=WP_011407574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157466.1;locus_tag=LLC55_RS03340;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=WP_011407574.1;transl_table=11 NZ_CP086200.1 RefSeq gene 698473 699030 . + . ID=gene-LLC55_RS03345;Name=LLC55_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03345;old_locus_tag=LLC55_03345 NZ_CP086200.1 Protein Homology CDS 698473 699030 . + 0 ID=cds-WP_011257609.1;Parent=gene-LLC55_RS03345;Dbxref=Genbank:WP_011257609.1;Name=WP_011257609.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450413.1;locus_tag=LLC55_RS03345;product=DUF1453 family protein;protein_id=WP_011257609.1;transl_table=11 NZ_CP086200.1 RefSeq gene 699315 700001 . - . ID=gene-LLC55_RS03350;Name=LLC55_RS03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03350;old_locus_tag=LLC55_03350 NZ_CP086200.1 Protein Homology CDS 699315 700001 . - 0 ID=cds-WP_011257610.1;Parent=gene-LLC55_RS03350;Dbxref=Genbank:WP_011257610.1;Name=WP_011257610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974312.1;locus_tag=LLC55_RS03350;product=outer membrane beta-barrel protein;protein_id=WP_011257610.1;transl_table=11 NZ_CP086200.1 RefSeq gene 700143 700703 . + . ID=gene-LLC55_RS03355;Name=LLC55_RS03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03355;old_locus_tag=LLC55_03355 NZ_CP086200.1 Protein Homology CDS 700143 700703 . + 0 ID=cds-WP_011257611.1;Parent=gene-LLC55_RS03355;Dbxref=Genbank:WP_011257611.1;Name=WP_011257611.1;Ontology_term=GO:0006285,GO:0033958;gbkey=CDS;go_function=DNA-deoxyinosine glycosylase activity|0033958||IEA;go_process=base-excision repair%2C AP site formation|0006285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472749.1;locus_tag=LLC55_RS03355;product=DNA-deoxyinosine glycosylase;protein_id=WP_011257611.1;transl_table=11 NZ_CP086200.1 RefSeq gene 700885 701643 . + . ID=gene-LLC55_RS03360;Name=LLC55_RS03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03360;old_locus_tag=LLC55_03360 NZ_CP086200.1 Protein Homology CDS 700885 701643 . + 0 ID=cds-WP_011257612.1;Parent=gene-LLC55_RS03360;Dbxref=Genbank:WP_011257612.1;Name=WP_011257612.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962078.1;locus_tag=LLC55_RS03360;product=DUF2884 family protein;protein_id=WP_011257612.1;transl_table=11 NZ_CP086200.1 RefSeq gene 701773 703566 . + . ID=gene-LLC55_RS03365;Name=LLC55_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03365;old_locus_tag=LLC55_03365 NZ_CP086200.1 Protein Homology CDS 701773 703566 . + 0 ID=cds-WP_011257613.1;Parent=gene-LLC55_RS03365;Dbxref=Genbank:WP_011257613.1;Name=WP_011257613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974307.1;locus_tag=LLC55_RS03365;product=dihydrolipoyllysine-residue acetyltransferase;protein_id=WP_011257613.1;transl_table=11 NZ_CP086200.1 RefSeq gene 703563 704210 . + . ID=gene-LLC55_RS03370;Name=LLC55_RS03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03370;old_locus_tag=LLC55_03370 NZ_CP086200.1 Protein Homology CDS 703563 704210 . + 0 ID=cds-WP_011257614.1;Parent=gene-LLC55_RS03370;Dbxref=Genbank:WP_011257614.1;Name=WP_011257614.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237994.1;locus_tag=LLC55_RS03370;product=hypothetical protein;protein_id=WP_011257614.1;transl_table=11 NZ_CP086200.1 RefSeq gene 704227 706050 . + . ID=gene-LLC55_RS03375;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=LLC55_RS03375;old_locus_tag=LLC55_03375 NZ_CP086200.1 Protein Homology CDS 704227 706050 . + 0 ID=cds-WP_011257615.1;Parent=gene-LLC55_RS03375;Dbxref=Genbank:WP_011257615.1;Name=WP_011257615.1;Ontology_term=GO:0006096,GO:0045454,GO:0051068,GO:0004148;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA;go_process=glycolytic process|0006096||IEA,cell redox homeostasis|0045454||IEA,dihydrolipoamide metabolic process|0051068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114723.1;locus_tag=LLC55_RS03375;product=dihydrolipoyl dehydrogenase;protein_id=WP_011257615.1;transl_table=11 NZ_CP086200.1 RefSeq gene 706112 706402 . + . ID=gene-LLC55_RS03380;Name=LLC55_RS03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03380;old_locus_tag=LLC55_03380 NZ_CP086200.1 Protein Homology CDS 706112 706402 . + 0 ID=cds-WP_011257616.1;Parent=gene-LLC55_RS03380;Dbxref=Genbank:WP_011257616.1;Name=WP_011257616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910286.1;locus_tag=LLC55_RS03380;product=hypothetical protein;protein_id=WP_011257616.1;transl_table=11 NZ_CP086200.1 RefSeq gene 706541 707353 . - . ID=gene-LLC55_RS03385;Name=LLC55_RS03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03385;old_locus_tag=LLC55_03385 NZ_CP086200.1 Protein Homology CDS 706541 707353 . - 0 ID=cds-WP_011257617.1;Parent=gene-LLC55_RS03385;Dbxref=Genbank:WP_011257617.1;Name=WP_011257617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171127.1;locus_tag=LLC55_RS03385;product=hypothetical protein;protein_id=WP_011257617.1;transl_table=11 NZ_CP086200.1 RefSeq gene 707886 708251 . + . ID=gene-LLC55_RS03390;Name=LLC55_RS03390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03390;old_locus_tag=LLC55_03390 NZ_CP086200.1 Protein Homology CDS 707886 708251 . + 0 ID=cds-WP_011407576.1;Parent=gene-LLC55_RS03390;Dbxref=Genbank:WP_011407576.1;Name=WP_011407576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155241.1;locus_tag=LLC55_RS03390;product=hypothetical protein;protein_id=WP_011407576.1;transl_table=11 NZ_CP086200.1 RefSeq gene 708277 709077 . + . ID=gene-LLC55_RS03395;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=LLC55_RS03395;old_locus_tag=LLC55_03395 NZ_CP086200.1 Protein Homology CDS 708277 709077 . + 0 ID=cds-WP_011257619.1;Parent=gene-LLC55_RS03395;Dbxref=Genbank:WP_011257619.1;Name=WP_011257619.1;Ontology_term=GO:0015986,GO:0015078,GO:0045263;gbkey=CDS;gene=atpB;go_component=proton-transporting ATP synthase complex%2C coupling factor F(o)|0045263||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814108.1;locus_tag=LLC55_RS03395;product=F0F1 ATP synthase subunit A;protein_id=WP_011257619.1;transl_table=11 NZ_CP086200.1 RefSeq gene 709150 709452 . + . ID=gene-LLC55_RS03400;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=LLC55_RS03400;old_locus_tag=LLC55_03400 NZ_CP086200.1 Protein Homology CDS 709150 709452 . + 0 ID=cds-WP_011257620.1;Parent=gene-LLC55_RS03400;Dbxref=Genbank:WP_011257620.1;Name=WP_011257620.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpE;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814105.1;locus_tag=LLC55_RS03400;product=F0F1 ATP synthase subunit C;protein_id=WP_011257620.1;transl_table=11 NZ_CP086200.1 RefSeq gene 709567 710037 . + . ID=gene-LLC55_RS03405;Name=LLC55_RS03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03405;old_locus_tag=LLC55_03405 NZ_CP086200.1 Protein Homology CDS 709567 710037 . + 0 ID=cds-WP_011257621.1;Parent=gene-LLC55_RS03405;Dbxref=Genbank:WP_011257621.1;Name=WP_011257621.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901014.1;locus_tag=LLC55_RS03405;product=F0F1 ATP synthase subunit B;protein_id=WP_011257621.1;transl_table=11 NZ_CP086200.1 RefSeq gene 710041 710568 . + . ID=gene-LLC55_RS03410;Name=LLC55_RS03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03410;old_locus_tag=LLC55_03410 NZ_CP086200.1 Protein Homology CDS 710041 710568 . + 0 ID=cds-WP_011257622.1;Parent=gene-LLC55_RS03410;Dbxref=Genbank:WP_011257622.1;Name=WP_011257622.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304550.1;locus_tag=LLC55_RS03410;product=F0F1 ATP synthase subunit delta;protein_id=WP_011257622.1;transl_table=11 NZ_CP086200.1 RefSeq gene 710616 712163 . + . ID=gene-LLC55_RS03415;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=LLC55_RS03415;old_locus_tag=LLC55_03415 NZ_CP086200.1 Protein Homology CDS 710616 712163 . + 0 ID=cds-WP_011257623.1;Parent=gene-LLC55_RS03415;Dbxref=Genbank:WP_011257623.1;Name=WP_011257623.1;Ontology_term=GO:0015986,GO:0046933,GO:0000275,GO:0045261,GO:0045262;gbkey=CDS;gene=atpA;go_component=mitochondrial proton-transporting ATP synthase complex%2C catalytic sector F(1)|0000275||IEA,proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA,plasma membrane proton-transporting ATP synthase complex%2C catalytic core F(1)|0045262||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161761.1;locus_tag=LLC55_RS03415;product=F0F1 ATP synthase subunit alpha;protein_id=WP_011257623.1;transl_table=11 NZ_CP086200.1 RefSeq gene 712357 713220 . + . ID=gene-LLC55_RS03420;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=LLC55_RS03420;old_locus_tag=LLC55_03420 NZ_CP086200.1 Protein Homology CDS 712357 713220 . + 0 ID=cds-WP_011257624.1;Parent=gene-LLC55_RS03420;Dbxref=Genbank:WP_011257624.1;Name=WP_011257624.1;Ontology_term=GO:0015986,GO:0046933,GO:0045261;gbkey=CDS;gene=atpG;go_component=proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371995.1;locus_tag=LLC55_RS03420;product=F0F1 ATP synthase subunit gamma;protein_id=WP_011257624.1;transl_table=11 NZ_CP086200.1 RefSeq gene 713365 714771 . + . ID=gene-LLC55_RS03425;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=LLC55_RS03425;old_locus_tag=LLC55_03425 NZ_CP086200.1 Protein Homology CDS 713365 714771 . + 0 ID=cds-WP_011257625.1;Parent=gene-LLC55_RS03425;Dbxref=Genbank:WP_011257625.1;Name=WP_011257625.1;Ontology_term=GO:0015986,GO:0046933,GO:0000275,GO:0045261,GO:0045262;gbkey=CDS;gene=atpD;go_component=mitochondrial proton-transporting ATP synthase complex%2C catalytic sector F(1)|0000275||IEA,proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA,plasma membrane proton-transporting ATP synthase complex%2C catalytic core F(1)|0045262||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504697.1;locus_tag=LLC55_RS03425;product=F0F1 ATP synthase subunit beta;protein_id=WP_011257625.1;transl_table=11 NZ_CP086200.1 RefSeq gene 714915 715337 . + . ID=gene-LLC55_RS03430;Name=LLC55_RS03430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03430;old_locus_tag=LLC55_03430 NZ_CP086200.1 Protein Homology CDS 714915 715337 . + 0 ID=cds-WP_011257626.1;Parent=gene-LLC55_RS03430;Dbxref=Genbank:WP_011257626.1;Name=WP_011257626.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407577.1;locus_tag=LLC55_RS03430;product=F0F1 ATP synthase subunit epsilon;protein_id=WP_011257626.1;transl_table=11 NZ_CP086200.1 RefSeq gene 715569 716141 . + . ID=gene-LLC55_RS03435;Name=LLC55_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03435;old_locus_tag=LLC55_03435 NZ_CP086200.1 Protein Homology CDS 715569 716141 . + 0 ID=cds-WP_011257627.1;Parent=gene-LLC55_RS03435;Dbxref=Genbank:WP_011257627.1;Name=WP_011257627.1;Ontology_term=GO:0046417;gbkey=CDS;go_process=chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371987.1;locus_tag=LLC55_RS03435;product=chorismate mutase;protein_id=WP_011257627.1;transl_table=11 NZ_CP086200.1 RefSeq gene 716664 717047 . - . ID=gene-LLC55_RS03440;Name=LLC55_RS03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03440;old_locus_tag=LLC55_03440 NZ_CP086200.1 Protein Homology CDS 716664 717047 . - 0 ID=cds-WP_011257628.1;Parent=gene-LLC55_RS03440;Dbxref=Genbank:WP_011257628.1;Name=WP_011257628.1;Ontology_term=GO:0000271,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484015.1;locus_tag=LLC55_RS03440;product=GtrA family protein;protein_id=WP_011257628.1;transl_table=11 NZ_CP086200.1 RefSeq gene 717192 718556 . + . ID=gene-LLC55_RS03445;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=LLC55_RS03445;old_locus_tag=LLC55_03445 NZ_CP086200.1 Protein Homology CDS 717192 718556 . + 0 ID=cds-WP_027703258.1;Parent=gene-LLC55_RS03445;Dbxref=Genbank:WP_027703258.1;Name=WP_027703258.1;Ontology_term=GO:0009103,GO:0009252,GO:0003977,GO:0019134,GO:0005737;gbkey=CDS;gene=glmU;go_component=cytoplasm|0005737||IEA;go_function=UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA,glucosamine-1-phosphate N-acetyltransferase activity|0019134||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407581.1;locus_tag=LLC55_RS03445;product=bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;protein_id=WP_027703258.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 718884 719042 . - . ID=gene-LLC55_RS03450;Name=LLC55_RS03450;end_range=719042,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03450;old_locus_tag=LLC55_03450;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 718884 719042 . - 0 ID=cds-LLC55_RS03450;Parent=gene-LLC55_RS03450;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=719042,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926625.1;locus_tag=LLC55_RS03450;partial=true;product=ATP-binding protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 719091 719264 . + . ID=gene-LLC55_RS03455;Name=LLC55_RS03455;end_range=719264,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03455;old_locus_tag=LLC55_03455;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 719091 719264 . + 0 ID=cds-LLC55_RS03455;Parent=gene-LLC55_RS03455;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=719264,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LLC55_RS03455;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 719282 720247 . - . ID=gene-LLC55_RS03460;Name=LLC55_RS03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03460;old_locus_tag=LLC55_03460 NZ_CP086200.1 Protein Homology CDS 719282 720247 . - 0 ID=cds-WP_109182076.1;Parent=gene-LLC55_RS03460;Dbxref=Genbank:WP_109182076.1;Name=WP_109182076.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS03460;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182076.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 720331 720920 . + . ID=gene-LLC55_RS03465;Name=LLC55_RS03465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03465;old_locus_tag=LLC55_03465;partial=true;pseudo=true;start_range=.,720331 NZ_CP086200.1 Protein Homology CDS 720331 720920 . + 0 ID=cds-LLC55_RS03465;Parent=gene-LLC55_RS03465;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS03465;partial=true;product=IS5 family transposase;pseudo=true;start_range=.,720331;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 721234 722450 . + . ID=gene-LLC55_RS03470;Name=LLC55_RS03470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03470;old_locus_tag=LLC55_03470;pseudo=true NZ_CP086200.1 Protein Homology CDS 721234 722450 . + 0 ID=cds-LLC55_RS03470;Parent=gene-LLC55_RS03470;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS03470;product=ISL3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 722458 722607 . - . ID=gene-LLC55_RS03475;Name=LLC55_RS03475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03475;old_locus_tag=LLC55_03475;partial=true;pseudo=true;start_range=.,722458 NZ_CP086200.1 Protein Homology CDS 722458 722607 . - 0 ID=cds-LLC55_RS03475;Parent=gene-LLC55_RS03475;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157226.1;locus_tag=LLC55_RS03475;partial=true;product=ATP-binding cassette domain-containing protein;pseudo=true;start_range=.,722458;transl_table=11 NZ_CP086200.1 RefSeq gene 722656 723927 . - . ID=gene-LLC55_RS03480;Name=LLC55_RS03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03480;old_locus_tag=LLC55_03480 NZ_CP086200.1 Protein Homology CDS 722656 723927 . - 0 ID=cds-WP_069960068.1;Parent=gene-LLC55_RS03480;Dbxref=Genbank:WP_069960068.1;Name=WP_069960068.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157227.1;locus_tag=LLC55_RS03480;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_069960068.1;transl_table=11 NZ_CP086200.1 RefSeq gene 724135 725964 . + . ID=gene-LLC55_RS03485;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=LLC55_RS03485;old_locus_tag=LLC55_03485 NZ_CP086200.1 Protein Homology CDS 724135 725964 . + 0 ID=cds-WP_011407585.1;Parent=gene-LLC55_RS03485;Dbxref=Genbank:WP_011407585.1;Name=WP_011407585.1;Ontology_term=GO:0006040,GO:0009252,GO:0004360;gbkey=CDS;gene=glmS;go_function=glutamine-fructose-6-phosphate transaminase (isomerizing) activity|0004360||IEA;go_process=amino sugar metabolic process|0006040||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159863.1;locus_tag=LLC55_RS03485;product=glutamine--fructose-6-phosphate transaminase (isomerizing);protein_id=WP_011407585.1;transl_table=11 NZ_CP086200.1 RefSeq gene 726346 726819 . + . ID=gene-LLC55_RS03490;Name=LLC55_RS03490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03490;old_locus_tag=LLC55_03490 NZ_CP086200.1 Protein Homology CDS 726346 726819 . + 0 ID=cds-WP_011257638.1;Parent=gene-LLC55_RS03490;Dbxref=Genbank:WP_011257638.1;Name=WP_011257638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506523.1;locus_tag=LLC55_RS03490;product=hypothetical protein;protein_id=WP_011257638.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 727051 727602 . + . ID=gene-LLC55_RS03495;Name=LLC55_RS03495;end_range=727602,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03495;old_locus_tag=LLC55_03495;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 727051 727602 . + 0 ID=cds-LLC55_RS03495;Parent=gene-LLC55_RS03495;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=727602,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173703.1;locus_tag=LLC55_RS03495;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 727659 728422 . + . ID=gene-LLC55_RS03500;Name=LLC55_RS03500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03500;old_locus_tag=LLC55_03500 NZ_CP086200.1 Protein Homology CDS 727659 727974 . + 0 ID=cds-WP_094187804.1;Parent=gene-LLC55_RS03500;Dbxref=Genbank:WP_094187804.1;Name=WP_094187804.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS03500;product=IS5 family transposase;protein_id=WP_094187804.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 727974 728422 . + 2 ID=cds-WP_094187804.1;Parent=gene-LLC55_RS03500;Dbxref=Genbank:WP_094187804.1;Name=WP_094187804.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS03500;product=IS5 family transposase;protein_id=WP_094187804.1;transl_table=11 NZ_CP086200.1 RefSeq gene 728538 729572 . + . ID=gene-LLC55_RS03505;Name=LLC55_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03505;old_locus_tag=LLC55_03505 NZ_CP086200.1 Protein Homology CDS 728538 729572 . + 0 ID=cds-WP_011407587.1;Parent=gene-LLC55_RS03505;Dbxref=Genbank:WP_011407587.1;Name=WP_011407587.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611268.1;locus_tag=LLC55_RS03505;product=IS630 family transposase;protein_id=WP_011407587.1;transl_table=11 NZ_CP086200.1 RefSeq gene 729662 729738 . + . ID=gene-LLC55_RS03510;Name=LLC55_RS03510;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS03510;old_locus_tag=LLC55_03510 NZ_CP086200.1 cmsearch ncRNA 729662 729738 . + . ID=rna-LLC55_RS03510;Parent=gene-LLC55_RS03510;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03510;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 729662 729738 . + . ID=exon-LLC55_RS03510-1;Parent=rna-LLC55_RS03510;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS03510;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 729789 730313 . - . ID=gene-LLC55_RS03515;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;locus_tag=LLC55_RS03515;old_locus_tag=LLC55_03515 NZ_CP086200.1 Protein Homology CDS 729789 730313 . - 0 ID=cds-WP_011407588.1;Parent=gene-LLC55_RS03515;Dbxref=Genbank:WP_011407588.1;Name=WP_011407588.1;Ontology_term=GO:0005975,GO:0051596,GO:0004462;gbkey=CDS;gene=gloA;go_function=lactoylglutathione lyase activity|0004462||IEA;go_process=carbohydrate metabolic process|0005975||IEA,methylglyoxal catabolic process|0051596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849953.1;locus_tag=LLC55_RS03515;product=lactoylglutathione lyase;protein_id=WP_011407588.1;transl_table=11 NZ_CP086200.1 RefSeq gene 730470 731576 . - . ID=gene-LLC55_RS03520;Name=LLC55_RS03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03520;old_locus_tag=LLC55_03520 NZ_CP086200.1 Protein Homology CDS 730470 731576 . - 0 ID=cds-WP_011257643.1;Parent=gene-LLC55_RS03520;Dbxref=Genbank:WP_011257643.1;Name=WP_011257643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167647.1;locus_tag=LLC55_RS03520;product=copper resistance protein B;protein_id=WP_011257643.1;transl_table=11 NZ_CP086200.1 RefSeq gene 731573 733420 . - . ID=gene-LLC55_RS03525;Name=LLC55_RS03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03525;old_locus_tag=LLC55_03525 NZ_CP086200.1 Protein Homology CDS 731573 733420 . - 0 ID=cds-WP_103057232.1;Parent=gene-LLC55_RS03525;Dbxref=Genbank:WP_103057232.1;Name=WP_103057232.1;Ontology_term=GO:0006825,GO:0005375,GO:0005507;gbkey=CDS;go_function=copper ion transmembrane transporter activity|0005375||IEA,copper ion binding|0005507||IEA;go_process=copper ion transport|0006825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091111.1;locus_tag=LLC55_RS03525;product=copper resistance system multicopper oxidase;protein_id=WP_103057232.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 733507 733963 . - . ID=gene-LLC55_RS03530;Name=LLC55_RS03530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03530;old_locus_tag=LLC55_03530;pseudo=true NZ_CP086200.1 Protein Homology CDS 733507 733963 . - 0 ID=cds-LLC55_RS03530;Parent=gene-LLC55_RS03530;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162684.1;locus_tag=LLC55_RS03530;product=CopL family metal-binding regulatory protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 734059 735162 . + . ID=gene-LLC55_RS03535;Name=LLC55_RS03535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03535;old_locus_tag=LLC55_03535 NZ_CP086200.1 Protein Homology CDS 734059 735162 . + 0 ID=cds-WP_011407590.1;Parent=gene-LLC55_RS03535;Dbxref=Genbank:WP_011407590.1;Name=WP_011407590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304765.1;locus_tag=LLC55_RS03535;product=PLP-dependent cysteine synthase family protein;protein_id=WP_011407590.1;transl_table=11 NZ_CP086200.1 RefSeq gene 735206 737230 . + . ID=gene-LLC55_RS03540;Name=LLC55_RS03540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03540;old_locus_tag=LLC55_03540 NZ_CP086200.1 Protein Homology CDS 735206 737230 . + 0 ID=cds-WP_069959722.1;Parent=gene-LLC55_RS03540;Dbxref=Genbank:WP_069959722.1;Name=WP_069959722.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304766.1;locus_tag=LLC55_RS03540;product=M3 family metallopeptidase;protein_id=WP_069959722.1;transl_table=11 NZ_CP086200.1 RefSeq gene 737404 738225 . + . ID=gene-LLC55_RS03545;Name=LLC55_RS03545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03545;old_locus_tag=LLC55_03545 NZ_CP086200.1 Protein Homology CDS 737404 738225 . + 0 ID=cds-WP_033013277.1;Parent=gene-LLC55_RS03545;Dbxref=Genbank:WP_033013277.1;Name=WP_033013277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504674.1;locus_tag=LLC55_RS03545;product=hypothetical protein;protein_id=WP_033013277.1;transl_table=11 NZ_CP086200.1 RefSeq gene 738339 739547 . - . ID=gene-LLC55_RS03550;Name=fabB;gbkey=Gene;gene=fabB;gene_biotype=protein_coding;locus_tag=LLC55_RS03550;old_locus_tag=LLC55_03550 NZ_CP086200.1 Protein Homology CDS 738339 739547 . - 0 ID=cds-WP_011257649.1;Parent=gene-LLC55_RS03550;Dbxref=Genbank:WP_011257649.1;Name=WP_011257649.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabB;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237990.1;locus_tag=LLC55_RS03550;product=beta-ketoacyl-ACP synthase I;protein_id=WP_011257649.1;transl_table=11 NZ_CP086200.1 RefSeq gene 739547 740062 . - . ID=gene-LLC55_RS03555;Name=fabA;gbkey=Gene;gene=fabA;gene_biotype=protein_coding;locus_tag=LLC55_RS03555;old_locus_tag=LLC55_03555 NZ_CP086200.1 Protein Homology CDS 739547 740062 . - 0 ID=cds-WP_011407593.1;Parent=gene-LLC55_RS03555;Dbxref=Genbank:WP_011407593.1;Name=WP_011407593.1;Ontology_term=GO:0019171;gbkey=CDS;gene=fabA;go_function=3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|0019171||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035827.1;locus_tag=LLC55_RS03555;product=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA;protein_id=WP_011407593.1;transl_table=11 NZ_CP086200.1 RefSeq gene 740408 741487 . + . ID=gene-LLC55_RS03560;Name=dinB;gbkey=Gene;gene=dinB;gene_biotype=protein_coding;locus_tag=LLC55_RS03560;old_locus_tag=LLC55_03560 NZ_CP086200.1 Protein Homology CDS 740408 741487 . + 0 ID=cds-WP_011407594.1;Parent=gene-LLC55_RS03560;Dbxref=Genbank:WP_011407594.1;Name=WP_011407594.1;Ontology_term=GO:0006281,GO:0003684,GO:0003887;gbkey=CDS;gene=dinB;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157240.1;locus_tag=LLC55_RS03560;product=DNA polymerase IV;protein_id=WP_011407594.1;transl_table=11 NZ_CP086200.1 RefSeq gene 741629 742279 . + . ID=gene-LLC55_RS03565;Name=gph;gbkey=Gene;gene=gph;gene_biotype=protein_coding;locus_tag=LLC55_RS03565;old_locus_tag=LLC55_03565 NZ_CP086200.1 Protein Homology CDS 741629 742279 . + 0 ID=cds-WP_011407595.1;Parent=gene-LLC55_RS03565;Dbxref=Genbank:WP_011407595.1;Name=WP_011407595.1;Note=PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (PF00702).;Ontology_term=GO:0008152,GO:0009853,GO:0043094,GO:0008967;gbkey=CDS;gene=gph;go_function=phosphoglycolate phosphatase activity|0008967||IEA;go_process=metabolic process|0008152||IEA,photorespiration|0009853||IEA,cellular metabolic compound salvage|0043094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348635.1;locus_tag=LLC55_RS03565;product=phosphoglycolate phosphatase;protein_id=WP_011407595.1;transl_table=11 NZ_CP086200.1 RefSeq gene 742591 742989 . - . ID=gene-LLC55_RS03570;Name=LLC55_RS03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03570;old_locus_tag=LLC55_03570 NZ_CP086200.1 Protein Homology CDS 742591 742989 . - 0 ID=cds-WP_011257653.1;Parent=gene-LLC55_RS03570;Dbxref=Genbank:WP_011257653.1;Name=WP_011257653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157242.1;locus_tag=LLC55_RS03570;product=TfoX/Sxy family protein;protein_id=WP_011257653.1;transl_table=11 NZ_CP086200.1 RefSeq gene 742986 743468 . - . ID=gene-LLC55_RS03575;Name=LLC55_RS03575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03575;old_locus_tag=LLC55_03575 NZ_CP086200.1 Protein Homology CDS 742986 743468 . - 0 ID=cds-WP_011407596.1;Parent=gene-LLC55_RS03575;Dbxref=Genbank:WP_011407596.1;Name=WP_011407596.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407596.1;locus_tag=LLC55_RS03575;product=GAF domain-containing protein;protein_id=WP_011407596.1;transl_table=11 NZ_CP086200.1 RefSeq gene 743793 744467 . + . ID=gene-LLC55_RS03580;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=LLC55_RS03580;old_locus_tag=LLC55_03580 NZ_CP086200.1 Protein Homology CDS 743793 744467 . + 0 ID=cds-WP_011407597.1;Parent=gene-LLC55_RS03580;Dbxref=Genbank:WP_011407597.1;Name=WP_011407597.1;Ontology_term=GO:0009102,GO:0004141;gbkey=CDS;gene=bioD;go_function=dethiobiotin synthase activity|0004141||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157245.1;locus_tag=LLC55_RS03580;product=dethiobiotin synthase;protein_id=WP_011407597.1;transl_table=11 NZ_CP086200.1 RefSeq gene 744582 744917 . - . ID=gene-LLC55_RS03585;Name=LLC55_RS03585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03585;old_locus_tag=LLC55_03585 NZ_CP086200.1 Protein Homology CDS 744582 744917 . - 0 ID=cds-WP_011407598.1;Parent=gene-LLC55_RS03585;Dbxref=Genbank:WP_011407598.1;Name=WP_011407598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158777.1;locus_tag=LLC55_RS03585;product=phasin family protein;protein_id=WP_011407598.1;transl_table=11 NZ_CP086200.1 RefSeq gene 745110 745463 . - . ID=gene-LLC55_RS03590;Name=queD;gbkey=Gene;gene=queD;gene_biotype=protein_coding;locus_tag=LLC55_RS03590;old_locus_tag=LLC55_03590 NZ_CP086200.1 Protein Homology CDS 745110 745463 . - 0 ID=cds-WP_027703598.1;Parent=gene-LLC55_RS03590;Dbxref=Genbank:WP_027703598.1;Name=WP_027703598.1;Ontology_term=GO:0008616,GO:0003824;gbkey=CDS;gene=queD;go_function=catalytic activity|0003824||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900974.1;locus_tag=LLC55_RS03590;product=6-carboxytetrahydropterin synthase QueD;protein_id=WP_027703598.1;transl_table=11 NZ_CP086200.1 RefSeq gene 745876 747258 . - . ID=gene-LLC55_RS03595;Name=LLC55_RS03595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03595;old_locus_tag=LLC55_03595 NZ_CP086200.1 Protein Homology CDS 745876 747258 . - 0 ID=cds-WP_011407600.1;Parent=gene-LLC55_RS03595;Dbxref=Genbank:WP_011407600.1;Name=WP_011407600.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446112.1;locus_tag=LLC55_RS03595;product=DEAD/DEAH box helicase;protein_id=WP_011407600.1;transl_table=11 NZ_CP086200.1 RefSeq gene 747569 748627 . + . ID=gene-LLC55_RS03600;Name=LLC55_RS03600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03600;old_locus_tag=LLC55_03600 NZ_CP086200.1 Protein Homology CDS 747569 748627 . + 0 ID=cds-WP_178383140.1;Parent=gene-LLC55_RS03600;Dbxref=Genbank:WP_178383140.1;Name=WP_178383140.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160204.1;locus_tag=LLC55_RS03600;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_178383140.1;transl_table=11 NZ_CP086200.1 RefSeq gene 748671 749297 . + . ID=gene-LLC55_RS03605;Name=maiA;gbkey=Gene;gene=maiA;gene_biotype=protein_coding;locus_tag=LLC55_RS03605;old_locus_tag=LLC55_03605 NZ_CP086200.1 Protein Homology CDS 748671 749297 . + 0 ID=cds-WP_042464484.1;Parent=gene-LLC55_RS03605;Dbxref=Genbank:WP_042464484.1;Name=WP_042464484.1;Ontology_term=GO:0006559,GO:0006572,GO:0016034;gbkey=CDS;gene=maiA;go_function=maleylacetoacetate isomerase activity|0016034||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA,tyrosine catabolic process|0006572||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301779.1;locus_tag=LLC55_RS03605;product=maleylacetoacetate isomerase;protein_id=WP_042464484.1;transl_table=11 NZ_CP086200.1 RefSeq gene 749636 750769 . - . ID=gene-LLC55_RS03610;Name=LLC55_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03610;old_locus_tag=LLC55_03610 NZ_CP086200.1 Protein Homology CDS 749636 750769 . - 0 ID=cds-WP_011407601.1;Parent=gene-LLC55_RS03610;Dbxref=Genbank:WP_011407601.1;Name=WP_011407601.1;Ontology_term=GO:0043107,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=type IV pilus-dependent motility|0043107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914752.1;locus_tag=LLC55_RS03610;product=PilT/PilU family type 4a pilus ATPase;protein_id=WP_011407601.1;transl_table=11 NZ_CP086200.1 RefSeq gene 750868 751251 . + . ID=gene-LLC55_RS03615;Name=LLC55_RS03615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03615;old_locus_tag=LLC55_03615 NZ_CP086200.1 Protein Homology CDS 750868 751251 . + 0 ID=cds-WP_011407602.1;Parent=gene-LLC55_RS03615;Dbxref=Genbank:WP_011407602.1;Name=WP_011407602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914753.1;locus_tag=LLC55_RS03615;product=DUF4398 domain-containing protein;protein_id=WP_011407602.1;transl_table=11 NZ_CP086200.1 RefSeq gene 751248 752138 . + . ID=gene-LLC55_RS03620;Name=LLC55_RS03620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03620;old_locus_tag=LLC55_03620 NZ_CP086200.1 Protein Homology CDS 751248 752138 . + 0 ID=cds-WP_011257662.1;Parent=gene-LLC55_RS03620;Dbxref=Genbank:WP_011257662.1;Name=WP_011257662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161845.1;locus_tag=LLC55_RS03620;product=membrane protein;protein_id=WP_011257662.1;transl_table=11 NZ_CP086200.1 RefSeq gene 752480 752698 . + . ID=gene-LLC55_RS03625;Name=LLC55_RS03625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03625;old_locus_tag=LLC55_03625 NZ_CP086200.1 Protein Homology CDS 752480 752698 . + 0 ID=cds-WP_003484103.1;Parent=gene-LLC55_RS03625;Dbxref=Genbank:WP_003484103.1;Name=WP_003484103.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237985.1;locus_tag=LLC55_RS03625;product=YdcH family protein;protein_id=WP_003484103.1;transl_table=11 NZ_CP086200.1 RefSeq gene 752940 754310 . + . ID=gene-LLC55_RS03630;Name=LLC55_RS03630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03630;old_locus_tag=LLC55_03630 NZ_CP086200.1 Protein Homology CDS 752940 754310 . + 0 ID=cds-WP_011407603.1;Parent=gene-LLC55_RS03630;Dbxref=Genbank:WP_011407603.1;Name=WP_011407603.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157251.1;locus_tag=LLC55_RS03630;product=pyridoxal-phosphate dependent enzyme;protein_id=WP_011407603.1;transl_table=11 NZ_CP086200.1 RefSeq gene 754401 755594 . + . ID=gene-LLC55_RS03635;Name=LLC55_RS03635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03635;old_locus_tag=LLC55_03635 NZ_CP086200.1 Protein Homology CDS 754401 755594 . + 0 ID=cds-WP_011257665.1;Parent=gene-LLC55_RS03635;Dbxref=Genbank:WP_011257665.1;Name=WP_011257665.1;Ontology_term=GO:0019346,GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301785.1;locus_tag=LLC55_RS03635;product=cystathionine gamma-synthase;protein_id=WP_011257665.1;transl_table=11 NZ_CP086200.1 RefSeq gene 755713 756441 . + . ID=gene-LLC55_RS03640;Name=LLC55_RS03640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03640;old_locus_tag=LLC55_03640 NZ_CP086200.1 Protein Homology CDS 755713 756441 . + 0 ID=cds-WP_011407604.1;Parent=gene-LLC55_RS03640;Dbxref=Genbank:WP_011407604.1;Name=WP_011407604.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446105.1;locus_tag=LLC55_RS03640;product=FkbM family methyltransferase;protein_id=WP_011407604.1;transl_table=11 NZ_CP086200.1 RefSeq gene 756476 757552 . + . ID=gene-LLC55_RS03645;Name=LLC55_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03645;old_locus_tag=LLC55_03645 NZ_CP086200.1 Protein Homology CDS 756476 757552 . + 0 ID=cds-WP_011407605.1;Parent=gene-LLC55_RS03645;Dbxref=Genbank:WP_011407605.1;Name=WP_011407605.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407605.1;locus_tag=LLC55_RS03645;product=SDR family oxidoreductase;protein_id=WP_011407605.1;transl_table=11 NZ_CP086200.1 RefSeq gene 757549 759510 . + . ID=gene-LLC55_RS03650;Name=LLC55_RS03650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03650;old_locus_tag=LLC55_03650 NZ_CP086200.1 Protein Homology CDS 757549 759510 . + 0 ID=cds-WP_228329681.1;Parent=gene-LLC55_RS03650;Dbxref=Genbank:WP_228329681.1;Name=WP_228329681.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015446795.1;locus_tag=LLC55_RS03650;product=glycosyltransferase;protein_id=WP_228329681.1;transl_table=11 NZ_CP086200.1 RefSeq gene 759531 759821 . + . ID=gene-LLC55_RS03655;Name=LLC55_RS03655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03655;old_locus_tag=LLC55_03655 NZ_CP086200.1 Protein Homology CDS 759531 759821 . + 0 ID=cds-WP_024744691.1;Parent=gene-LLC55_RS03655;Dbxref=Genbank:WP_024744691.1;Name=WP_024744691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015446796.1;locus_tag=LLC55_RS03655;product=hypothetical protein;protein_id=WP_024744691.1;transl_table=11 NZ_CP086200.1 RefSeq gene 759821 760975 . + . ID=gene-LLC55_RS03660;Name=LLC55_RS03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03660;old_locus_tag=LLC55_03660 NZ_CP086200.1 Protein Homology CDS 759821 760975 . + 0 ID=cds-WP_228329682.1;Parent=gene-LLC55_RS03660;Dbxref=Genbank:WP_228329682.1;Name=WP_228329682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257668.1;locus_tag=LLC55_RS03660;product=glycosyltransferase;protein_id=WP_228329682.1;transl_table=11 NZ_CP086200.1 RefSeq gene 760981 762033 . + . ID=gene-LLC55_RS03665;Name=LLC55_RS03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03665;old_locus_tag=LLC55_03665 NZ_CP086200.1 Protein Homology CDS 760981 762033 . + 0 ID=cds-WP_011257669.1;Parent=gene-LLC55_RS03665;Dbxref=Genbank:WP_011257669.1;Name=WP_011257669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257669.1;locus_tag=LLC55_RS03665;product=acyltransferase;protein_id=WP_011257669.1;transl_table=11 NZ_CP086200.1 RefSeq gene 762120 763439 . + . ID=gene-LLC55_RS03670;Name=LLC55_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03670;old_locus_tag=LLC55_03670 NZ_CP086200.1 Protein Homology CDS 762120 763439 . + 0 ID=cds-WP_109182077.1;Parent=gene-LLC55_RS03670;Dbxref=Genbank:WP_109182077.1;Name=WP_109182077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS03670;product=IS701-like element ISXo15 family transposase;protein_id=WP_109182077.1;transl_table=11 NZ_CP086200.1 RefSeq gene 763755 764939 . + . ID=gene-LLC55_RS03675;Name=LLC55_RS03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03675;old_locus_tag=LLC55_03675 NZ_CP086200.1 Protein Homology CDS 763755 764939 . + 0 ID=cds-WP_011407609.1;Parent=gene-LLC55_RS03675;Dbxref=Genbank:WP_011407609.1;Name=WP_011407609.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS03675;product=IS256-like element IS1113 family transposase;protein_id=WP_011407609.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 765057 765359 . + . ID=gene-LLC55_RS03680;Name=LLC55_RS03680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03680;old_locus_tag=LLC55_03680;partial=true;pseudo=true;start_range=.,765057 NZ_CP086200.1 Protein Homology CDS 765057 765359 . + 0 ID=cds-LLC55_RS03680;Parent=gene-LLC55_RS03680;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS03680;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,765057;transl_table=11 NZ_CP086200.1 RefSeq gene 765469 766782 . - . ID=gene-LLC55_RS03685;Name=LLC55_RS03685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03685;old_locus_tag=LLC55_03685 NZ_CP086200.1 Protein Homology CDS 765469 766782 . - 0 ID=cds-WP_011407610.1;Parent=gene-LLC55_RS03685;Dbxref=Genbank:WP_011407610.1;Name=WP_011407610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407610.1;locus_tag=LLC55_RS03685;product=ABC transporter ATP-binding protein;protein_id=WP_011407610.1;transl_table=11 NZ_CP086200.1 RefSeq gene 766772 767590 . - . ID=gene-LLC55_RS03690;Name=LLC55_RS03690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03690;old_locus_tag=LLC55_03690 NZ_CP086200.1 Protein Homology CDS 766772 767590 . - 0 ID=cds-WP_011407611.1;Parent=gene-LLC55_RS03690;Dbxref=Genbank:WP_011407611.1;Name=WP_011407611.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446100.1;locus_tag=LLC55_RS03690;product=ABC transporter permease;protein_id=WP_011407611.1;transl_table=11 NZ_CP086200.1 RefSeq gene 767813 768754 . - . ID=gene-LLC55_RS03695;Name=LLC55_RS03695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03695;old_locus_tag=LLC55_03695 NZ_CP086200.1 Protein Homology CDS 767813 768754 . - 0 ID=cds-WP_069959723.1;Parent=gene-LLC55_RS03695;Dbxref=Genbank:WP_069959723.1;Name=WP_069959723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257674.1;locus_tag=LLC55_RS03695;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=WP_069959723.1;transl_table=11 NZ_CP086200.1 RefSeq gene 768754 769500 . - . ID=gene-LLC55_RS03700;Name=LLC55_RS03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03700;old_locus_tag=LLC55_03700 NZ_CP086200.1 Protein Homology CDS 768754 769500 . - 0 ID=cds-WP_011257675.1;Parent=gene-LLC55_RS03700;Dbxref=Genbank:WP_011257675.1;Name=WP_011257675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019182580.1;locus_tag=LLC55_RS03700;product=electron transfer flavoprotein subunit beta/FixA family protein;protein_id=WP_011257675.1;transl_table=11 NZ_CP086200.1 RefSeq gene 769726 770781 . + . ID=gene-LLC55_RS03705;Name=rfbB;gbkey=Gene;gene=rfbB;gene_biotype=protein_coding;locus_tag=LLC55_RS03705;old_locus_tag=LLC55_03705 NZ_CP086200.1 Protein Homology CDS 769726 770781 . + 0 ID=cds-WP_011407612.1;Parent=gene-LLC55_RS03705;Dbxref=Genbank:WP_011407612.1;Name=WP_011407612.1;Ontology_term=GO:0009243,GO:0019305,GO:0008460;gbkey=CDS;gene=rfbB;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407612.1;locus_tag=LLC55_RS03705;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_011407612.1;transl_table=11 NZ_CP086200.1 RefSeq gene 770837 771724 . + . ID=gene-LLC55_RS03710;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;locus_tag=LLC55_RS03710;old_locus_tag=LLC55_03710 NZ_CP086200.1 Protein Homology CDS 770837 771724 . + 0 ID=cds-WP_011407613.1;Parent=gene-LLC55_RS03710;Dbxref=Genbank:WP_011407613.1;Name=WP_011407613.1;Ontology_term=GO:0009243,GO:0019305,GO:0008879;gbkey=CDS;gene=rfbA;go_function=glucose-1-phosphate thymidylyltransferase activity|0008879||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903936.1;locus_tag=LLC55_RS03710;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_011407613.1;transl_table=11 NZ_CP086200.1 RefSeq gene 771721 772278 . + . ID=gene-LLC55_RS03715;Name=rfbC;gbkey=Gene;gene=rfbC;gene_biotype=protein_coding;locus_tag=LLC55_RS03715;old_locus_tag=LLC55_03715 NZ_CP086200.1 Protein Homology CDS 771721 772278 . + 0 ID=cds-WP_011407614.1;Parent=gene-LLC55_RS03715;Dbxref=Genbank:WP_011407614.1;Name=WP_011407614.1;Ontology_term=GO:0009243,GO:0019305,GO:0008830;gbkey=CDS;gene=rfbC;go_function=dTDP-4-dehydrorhamnose 3%2C5-epimerase activity|0008830||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377788.1;locus_tag=LLC55_RS03715;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=WP_011407614.1;transl_table=11 NZ_CP086200.1 RefSeq gene 772275 773183 . + . ID=gene-LLC55_RS03720;Name=rfbD;gbkey=Gene;gene=rfbD;gene_biotype=protein_coding;locus_tag=LLC55_RS03720;old_locus_tag=LLC55_03720 NZ_CP086200.1 Protein Homology CDS 772275 773183 . + 0 ID=cds-WP_011407615.1;Parent=gene-LLC55_RS03720;Dbxref=Genbank:WP_011407615.1;Name=WP_011407615.1;Ontology_term=GO:0009243,GO:0019305,GO:0008831;gbkey=CDS;gene=rfbD;go_function=dTDP-4-dehydrorhamnose reductase activity|0008831||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446096.1;locus_tag=LLC55_RS03720;product=dTDP-4-dehydrorhamnose reductase;protein_id=WP_011407615.1;transl_table=11 NZ_CP086200.1 RefSeq gene 773300 774703 . - . ID=gene-LLC55_RS03725;Name=LLC55_RS03725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03725;old_locus_tag=LLC55_03725 NZ_CP086200.1 Protein Homology CDS 773300 774703 . - 0 ID=cds-WP_011257680.1;Parent=gene-LLC55_RS03725;Dbxref=Genbank:WP_011257680.1;Name=WP_011257680.1;Ontology_term=GO:0009103,GO:0004476;gbkey=CDS;go_function=mannose-6-phosphate isomerase activity|0004476||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850199.1;locus_tag=LLC55_RS03725;product=mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;protein_id=WP_011257680.1;transl_table=11 NZ_CP086200.1 RefSeq gene 774750 776096 . - . ID=gene-LLC55_RS03730;Name=LLC55_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03730;old_locus_tag=LLC55_03730 NZ_CP086200.1 Protein Homology CDS 774750 776096 . - 0 ID=cds-WP_011407616.1;Parent=gene-LLC55_RS03730;Dbxref=Genbank:WP_011407616.1;Name=WP_011407616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303601.1;locus_tag=LLC55_RS03730;product=phosphomannomutase/phosphoglucomutase;protein_id=WP_011407616.1;transl_table=11 NZ_CP086200.1 RefSeq gene 776230 776961 . + . ID=gene-LLC55_RS03735;Name=LLC55_RS03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03735;old_locus_tag=LLC55_03735 NZ_CP086200.1 Protein Homology CDS 776230 776961 . + 0 ID=cds-WP_011407617.1;Parent=gene-LLC55_RS03735;Dbxref=Genbank:WP_011407617.1;Name=WP_011407617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484175.1;locus_tag=LLC55_RS03735;product=CoA transferase subunit A;protein_id=WP_011407617.1;transl_table=11 NZ_CP086200.1 RefSeq gene 776961 777590 . + . ID=gene-LLC55_RS03740;Name=LLC55_RS03740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03740;old_locus_tag=LLC55_03740 NZ_CP086200.1 Protein Homology CDS 776961 777590 . + 0 ID=cds-WP_011257683.1;Parent=gene-LLC55_RS03740;Dbxref=Genbank:WP_011257683.1;Name=WP_011257683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158247.1;locus_tag=LLC55_RS03740;product=CoA transferase subunit B;protein_id=WP_011257683.1;transl_table=11 NZ_CP086200.1 RefSeq gene 777648 779735 . - . ID=gene-LLC55_RS03745;Name=LLC55_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03745;old_locus_tag=LLC55_03745 NZ_CP086200.1 Protein Homology CDS 777648 779735 . - 0 ID=cds-WP_011407618.1;Parent=gene-LLC55_RS03745;Dbxref=Genbank:WP_011407618.1;Name=WP_011407618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158246.1;locus_tag=LLC55_RS03745;product=glycoside hydrolase family 99-like domain-containing protein;protein_id=WP_011407618.1;transl_table=11 NZ_CP086200.1 RefSeq gene 779732 781381 . - . ID=gene-LLC55_RS03750;Name=LLC55_RS03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03750;old_locus_tag=LLC55_03750 NZ_CP086200.1 Protein Homology CDS 779732 781381 . - 0 ID=cds-WP_012446093.1;Parent=gene-LLC55_RS03750;Dbxref=Genbank:WP_012446093.1;Name=WP_012446093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348604.1;locus_tag=LLC55_RS03750;product=electron transfer flavoprotein-ubiquinone oxidoreductase;protein_id=WP_012446093.1;transl_table=11 NZ_CP086200.1 RefSeq gene 781497 782105 . + . ID=gene-LLC55_RS03755;Name=LLC55_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03755;old_locus_tag=LLC55_03755 NZ_CP086200.1 Protein Homology CDS 781497 782105 . + 0 ID=cds-WP_011257686.1;Parent=gene-LLC55_RS03755;Dbxref=Genbank:WP_011257686.1;Name=WP_011257686.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257686.1;locus_tag=LLC55_RS03755;product=alpha-ketoglutarate-dependent dioxygenase AlkB;protein_id=WP_011257686.1;transl_table=11 NZ_CP086200.1 RefSeq gene 782656 783300 . - . ID=gene-LLC55_RS03760;Name=LLC55_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03760;old_locus_tag=LLC55_03760 NZ_CP086200.1 Protein Homology CDS 782656 783300 . - 0 ID=cds-WP_011257687.1;Parent=gene-LLC55_RS03760;Dbxref=Genbank:WP_011257687.1;Name=WP_011257687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257687.1;locus_tag=LLC55_RS03760;product=ABC-type transport auxiliary lipoprotein family protein;protein_id=WP_011257687.1;transl_table=11 NZ_CP086200.1 RefSeq gene 783297 784223 . - . ID=gene-LLC55_RS03765;Name=LLC55_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03765;old_locus_tag=LLC55_03765 NZ_CP086200.1 Protein Homology CDS 783297 784223 . - 0 ID=cds-WP_011257688.1;Parent=gene-LLC55_RS03765;Dbxref=Genbank:WP_011257688.1;Name=WP_011257688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903957.1;locus_tag=LLC55_RS03765;product=MlaD family protein;protein_id=WP_011257688.1;transl_table=11 NZ_CP086200.1 RefSeq gene 784226 785068 . - . ID=gene-LLC55_RS03770;Name=LLC55_RS03770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03770;old_locus_tag=LLC55_03770 NZ_CP086200.1 Protein Homology CDS 784226 785068 . - 0 ID=cds-WP_011257689.1;Parent=gene-LLC55_RS03770;Dbxref=Genbank:WP_011257689.1;Name=WP_011257689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969506.1;locus_tag=LLC55_RS03770;product=ABC transporter ATP-binding protein;protein_id=WP_011257689.1;transl_table=11 NZ_CP086200.1 RefSeq gene 785154 786266 . - . ID=gene-LLC55_RS03775;Name=LLC55_RS03775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03775;old_locus_tag=LLC55_03775 NZ_CP086200.1 Protein Homology CDS 785154 786266 . - 0 ID=cds-WP_011407620.1;Parent=gene-LLC55_RS03775;Dbxref=Genbank:WP_011407620.1;Name=WP_011407620.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813964.1;locus_tag=LLC55_RS03775;product=ABC transporter permease;protein_id=WP_011407620.1;transl_table=11 NZ_CP086200.1 RefSeq gene 786436 787695 . + . ID=gene-LLC55_RS03780;Name=LLC55_RS03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03780;old_locus_tag=LLC55_03780 NZ_CP086200.1 Protein Homology CDS 786436 787695 . + 0 ID=cds-WP_011257691.1;Parent=gene-LLC55_RS03780;Dbxref=Genbank:WP_011257691.1;Name=WP_011257691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506577.1;locus_tag=LLC55_RS03780;product=threonine/serine exporter family protein;protein_id=WP_011257691.1;transl_table=11 NZ_CP086200.1 RefSeq gene 787757 788218 . - . ID=gene-LLC55_RS03785;Name=LLC55_RS03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03785;old_locus_tag=LLC55_03785 NZ_CP086200.1 Protein Homology CDS 787757 788218 . - 0 ID=cds-WP_011407621.1;Parent=gene-LLC55_RS03785;Dbxref=Genbank:WP_011407621.1;Name=WP_011407621.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407621.1;locus_tag=LLC55_RS03785;product=H-NS family nucleoid-associated regulatory protein;protein_id=WP_011407621.1;transl_table=11 NZ_CP086200.1 RefSeq gene 788361 790055 . - . ID=gene-LLC55_RS03790;Name=LLC55_RS03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03790;old_locus_tag=LLC55_03790 NZ_CP086200.1 Protein Homology CDS 788361 790055 . - 0 ID=cds-WP_011257693.1;Parent=gene-LLC55_RS03790;Dbxref=Genbank:WP_011257693.1;Name=WP_011257693.1;Ontology_term=GO:0006418,GO:0006433,GO:0000166,GO:0002161,GO:0004812,GO:0004827,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA editing activity|0002161||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,proline-tRNA ligase activity|0004827||IEA,ATP binding|0005524||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA,prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902894.1;locus_tag=LLC55_RS03790;product=proline--tRNA ligase;protein_id=WP_011257693.1;transl_table=11 NZ_CP086200.1 RefSeq gene 790167 790571 . - . ID=gene-LLC55_RS03795;Name=LLC55_RS03795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03795;old_locus_tag=LLC55_03795 NZ_CP086200.1 Protein Homology CDS 790167 790571 . - 0 ID=cds-WP_011257694.1;Parent=gene-LLC55_RS03795;Dbxref=Genbank:WP_011257694.1;Name=WP_011257694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446090.1;locus_tag=LLC55_RS03795;product=DUF4124 domain-containing protein;protein_id=WP_011257694.1;transl_table=11 NZ_CP086200.1 RefSeq gene 790703 791476 . + . ID=gene-LLC55_RS03800;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=LLC55_RS03800;old_locus_tag=LLC55_03800 NZ_CP086200.1 Protein Homology CDS 790703 791476 . + 0 ID=cds-WP_011407623.1;Parent=gene-LLC55_RS03800;Dbxref=Genbank:WP_011407623.1;Name=WP_011407623.1;Ontology_term=GO:0008654,GO:0003882;gbkey=CDS;gene=pssA;go_function=CDP-diacylglycerol-serine O-phosphatidyltransferase activity|0003882||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991773.1;locus_tag=LLC55_RS03800;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_011407623.1;transl_table=11 NZ_CP086200.1 RefSeq gene 791511 791954 . + . ID=gene-LLC55_RS03805;Name=LLC55_RS03805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03805;old_locus_tag=LLC55_03805 NZ_CP086200.1 Protein Homology CDS 791511 791954 . + 0 ID=cds-WP_171970793.1;Parent=gene-LLC55_RS03805;Dbxref=Genbank:WP_171970793.1;Name=WP_171970793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913473.1;locus_tag=LLC55_RS03805;product=alanine acetyltransferase;protein_id=WP_171970793.1;transl_table=11 NZ_CP086200.1 RefSeq gene 791951 792433 . + . ID=gene-LLC55_RS03810;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=LLC55_RS03810;old_locus_tag=LLC55_03810 NZ_CP086200.1 Protein Homology CDS 791951 792433 . + 0 ID=cds-WP_011407624.1;Parent=gene-LLC55_RS03810;Dbxref=Genbank:WP_011407624.1;Name=WP_011407624.1;Ontology_term=GO:0036211,GO:0042254,GO:0008999;gbkey=CDS;gene=rimI;go_function=peptide-alanine-alpha-N-acetyltransferase activity|0008999||IEA;go_process=protein modification process|0036211||IEA,ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019768432.1;locus_tag=LLC55_RS03810;product=ribosomal protein S18-alanine N-acetyltransferase;protein_id=WP_011407624.1;transl_table=11 NZ_CP086200.1 RefSeq gene 792992 794311 . + . ID=gene-LLC55_RS03815;Name=LLC55_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03815;old_locus_tag=LLC55_03815 NZ_CP086200.1 Protein Homology CDS 792992 794311 . + 0 ID=cds-WP_109182079.1;Parent=gene-LLC55_RS03815;Dbxref=Genbank:WP_109182079.1;Name=WP_109182079.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS03815;product=IS701 family transposase;protein_id=WP_109182079.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 794469 795792 . + . ID=gene-LLC55_RS03820;Name=LLC55_RS03820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03820;old_locus_tag=LLC55_03820;pseudo=true NZ_CP086200.1 Protein Homology CDS 794469 795792 . + 0 ID=cds-LLC55_RS03820;Parent=gene-LLC55_RS03820;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS03820;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 796005 796973 . - . ID=gene-LLC55_RS03825;Name=LLC55_RS03825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03825;old_locus_tag=LLC55_03825 NZ_CP086200.1 Protein Homology CDS 796005 796973 . - 0 ID=cds-WP_011407627.1;Parent=gene-LLC55_RS03825;Dbxref=Genbank:WP_011407627.1;Name=WP_011407627.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS03825;product=IS5-like element ISXo1 family transposase;protein_id=WP_011407627.1;transl_table=11 NZ_CP086200.1 RefSeq gene 797123 798442 . - . ID=gene-LLC55_RS03830;Name=LLC55_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03830;old_locus_tag=LLC55_03830 NZ_CP086200.1 Protein Homology CDS 797123 798442 . - 0 ID=cds-WP_228329683.1;Parent=gene-LLC55_RS03830;Dbxref=Genbank:WP_228329683.1;Name=WP_228329683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS03830;product=IS701-like element ISXo15 family transposase;protein_id=WP_228329683.1;transl_table=11 NZ_CP086200.1 RefSeq gene 798747 800720 . + . ID=gene-LLC55_RS03835;Name=LLC55_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03835;old_locus_tag=LLC55_03835 NZ_CP086200.1 Protein Homology CDS 798747 800720 . + 0 ID=cds-WP_027704044.1;Parent=gene-LLC55_RS03835;Dbxref=Genbank:WP_027704044.1;Name=WP_027704044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117455.1;locus_tag=LLC55_RS03835;product=transglycosylase SLT domain-containing protein;protein_id=WP_027704044.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 800987 802121 . - . ID=gene-LLC55_RS03840;Name=LLC55_RS03840;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03840;old_locus_tag=LLC55_03840;pseudo=true NZ_CP086200.1 Protein Homology CDS 800987 802121 . - 0 ID=cds-LLC55_RS03840;Parent=gene-LLC55_RS03840;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159791.1;locus_tag=LLC55_RS03840;product=pectate lyase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 802347 802925 . - . ID=gene-LLC55_RS03845;Name=LLC55_RS03845;end_range=802925,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03845;old_locus_tag=LLC55_03845;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 802347 802925 . - 0 ID=cds-LLC55_RS03845;Parent=gene-LLC55_RS03845;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=802925,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS03845;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 802987 803955 . + . ID=gene-LLC55_RS03850;Name=LLC55_RS03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03850;old_locus_tag=LLC55_03850 NZ_CP086200.1 Protein Homology CDS 802987 803955 . + 0 ID=cds-WP_011258802.1;Parent=gene-LLC55_RS03850;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS03850;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 804080 804730 . - . ID=gene-LLC55_RS03855;Name=LLC55_RS03855;end_range=804730,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03855;old_locus_tag=LLC55_03855;partial=true;pseudo=true;start_range=.,804080 NZ_CP086200.1 Protein Homology CDS 804080 804730 . - 0 ID=cds-LLC55_RS03855;Parent=gene-LLC55_RS03855;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=804730,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS03855;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,804080;transl_table=11 NZ_CP086200.1 RefSeq gene 804777 805575 . + . ID=gene-LLC55_RS03860;Name=LLC55_RS03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03860;old_locus_tag=LLC55_03860 NZ_CP086200.1 Protein Homology CDS 804777 805048 . + 0 ID=cds-WP_094187731.1;Parent=gene-LLC55_RS03860;Dbxref=Genbank:WP_094187731.1;Name=WP_094187731.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS03860;product=IS5 family transposase;protein_id=WP_094187731.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 805047 805575 . + 1 ID=cds-WP_094187731.1;Parent=gene-LLC55_RS03860;Dbxref=Genbank:WP_094187731.1;Name=WP_094187731.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS03860;product=IS5 family transposase;protein_id=WP_094187731.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 805585 806160 . + . ID=gene-LLC55_RS03865;Name=LLC55_RS03865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03865;old_locus_tag=LLC55_03865;partial=true;pseudo=true;start_range=.,805585 NZ_CP086200.1 Protein Homology CDS 805585 806160 . + 0 ID=cds-LLC55_RS03865;Parent=gene-LLC55_RS03865;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS03865;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,805585;transl_table=11 NZ_CP086200.1 RefSeq gene 806227 806535 . - . ID=gene-LLC55_RS03870;Name=LLC55_RS03870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03870;old_locus_tag=LLC55_03870 NZ_CP086200.1 Protein Homology CDS 806227 806535 . - 0 ID=cds-WP_228329734.1;Parent=gene-LLC55_RS03870;Dbxref=Genbank:WP_228329734.1;Name=WP_228329734.1;Ontology_term=GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: protein motif:HMM:NF019846.2;locus_tag=LLC55_RS03870;product=methyltransferase domain-containing protein;protein_id=WP_228329734.1;transl_table=11 NZ_CP086200.1 RefSeq gene 806727 807769 . - . ID=gene-LLC55_RS03875;Name=LLC55_RS03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03875;old_locus_tag=LLC55_03875 NZ_CP086200.1 Protein Homology CDS 807574 807769 . - 0 ID=cds-WP_229001939.1;Parent=gene-LLC55_RS03875;Dbxref=Genbank:WP_229001939.1;Name=WP_229001939.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS03875;product=IS3 family transposase;protein_id=WP_229001939.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 806727 807574 . - 2 ID=cds-WP_229001939.1;Parent=gene-LLC55_RS03875;Dbxref=Genbank:WP_229001939.1;Name=WP_229001939.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS03875;product=IS3 family transposase;protein_id=WP_229001939.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 807888 808214 . - . ID=gene-LLC55_RS03880;Name=LLC55_RS03880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03880;old_locus_tag=LLC55_03880;partial=true;pseudo=true;start_range=.,807888 NZ_CP086200.1 Protein Homology CDS 807888 808214 . - 0 ID=cds-LLC55_RS03880;Parent=gene-LLC55_RS03880;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS03880;partial=true;product=transposase;pseudo=true;start_range=.,807888;transl_table=11 NZ_CP086200.1 RefSeq gene 808456 808635 . - . ID=gene-LLC55_RS03885;Name=LLC55_RS03885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03885;old_locus_tag=LLC55_03885 NZ_CP086200.1 Protein Homology CDS 808456 808635 . - 0 ID=cds-WP_012446080.1;Parent=gene-LLC55_RS03885;Dbxref=Genbank:WP_012446080.1;Name=WP_012446080.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016107.2;locus_tag=LLC55_RS03885;product=methyltransferase;protein_id=WP_012446080.1;transl_table=11 NZ_CP086200.1 RefSeq gene 808766 811708 . - . ID=gene-LLC55_RS03890;Name=LLC55_RS03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03890;old_locus_tag=LLC55_03890 NZ_CP086200.1 Protein Homology CDS 808766 811708 . - 0 ID=cds-WP_011257710.1;Parent=gene-LLC55_RS03890;Dbxref=Genbank:WP_011257710.1;Name=WP_011257710.1;Ontology_term=GO:0006438,GO:0000166,GO:0004812,GO:0004832,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,valine-tRNA ligase activity|0004832||IEA,ATP binding|0005524||IEA;go_process=valyl-tRNA aminoacylation|0006438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159789.1;locus_tag=LLC55_RS03890;product=valine--tRNA ligase;protein_id=WP_011257710.1;transl_table=11 NZ_CP086200.1 RefSeq gene 811916 812341 . - . ID=gene-LLC55_RS03895;Name=LLC55_RS03895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03895;old_locus_tag=LLC55_03895 NZ_CP086200.1 Protein Homology CDS 811916 812341 . - 0 ID=cds-WP_011257711.1;Parent=gene-LLC55_RS03895;Dbxref=Genbank:WP_011257711.1;Name=WP_011257711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902887.1;locus_tag=LLC55_RS03895;product=DNA polymerase III subunit chi;protein_id=WP_011257711.1;transl_table=11 NZ_CP086200.1 RefSeq gene 812382 812687 . - . ID=gene-LLC55_RS03900;Name=LLC55_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03900;old_locus_tag=LLC55_03900 NZ_CP086200.1 Protein Homology CDS 812382 812687 . - 0 ID=cds-WP_011257712.1;Parent=gene-LLC55_RS03900;Dbxref=Genbank:WP_011257712.1;Name=WP_011257712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257712.1;locus_tag=LLC55_RS03900;product=hypothetical protein;protein_id=WP_011257712.1;transl_table=11 NZ_CP086200.1 RefSeq gene 812687 814159 . - . ID=gene-LLC55_RS03905;Name=LLC55_RS03905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03905;old_locus_tag=LLC55_03905 NZ_CP086200.1 Protein Homology CDS 812687 814159 . - 0 ID=cds-WP_011257713.1;Parent=gene-LLC55_RS03905;Dbxref=Genbank:WP_011257713.1;Name=WP_011257713.1;Ontology_term=GO:0019538,GO:0070006;gbkey=CDS;go_function=metalloaminopeptidase activity|0070006||IEA;go_process=protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257713.1;locus_tag=LLC55_RS03905;product=leucyl aminopeptidase;protein_id=WP_011257713.1;transl_table=11 NZ_CP086200.1 RefSeq gene 814267 815349 . + . ID=gene-LLC55_RS03910;Name=lptF;gbkey=Gene;gene=lptF;gene_biotype=protein_coding;locus_tag=LLC55_RS03910;old_locus_tag=LLC55_03910 NZ_CP086200.1 Protein Homology CDS 814267 815349 . + 0 ID=cds-WP_011407634.1;Parent=gene-LLC55_RS03910;Dbxref=Genbank:WP_011407634.1;Name=WP_011407634.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptF;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052356.1;locus_tag=LLC55_RS03910;product=LPS export ABC transporter permease LptF;protein_id=WP_011407634.1;transl_table=11 NZ_CP086200.1 RefSeq gene 815346 816452 . + . ID=gene-LLC55_RS03915;Name=lptG;gbkey=Gene;gene=lptG;gene_biotype=protein_coding;locus_tag=LLC55_RS03915;old_locus_tag=LLC55_03915 NZ_CP086200.1 Protein Homology CDS 815346 816452 . + 0 ID=cds-WP_011407635.1;Parent=gene-LLC55_RS03915;Dbxref=Genbank:WP_011407635.1;Name=WP_011407635.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptG;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964177.1;locus_tag=LLC55_RS03915;product=LPS export ABC transporter permease LptG;protein_id=WP_011407635.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 816457 816756 . + . ID=gene-LLC55_RS03920;Name=LLC55_RS03920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03920;old_locus_tag=LLC55_03920;pseudo=true NZ_CP086200.1 Protein Homology CDS 816457 816756 . + 0 ID=cds-LLC55_RS03920;Parent=gene-LLC55_RS03920;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091062.1;locus_tag=LLC55_RS03920;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 816867 817334 . - . ID=gene-LLC55_RS03925;Name=LLC55_RS03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03925;old_locus_tag=LLC55_03925 NZ_CP086200.1 Protein Homology CDS 816867 817334 . - 0 ID=cds-WP_011257716.1;Parent=gene-LLC55_RS03925;Dbxref=Genbank:WP_011257716.1;Name=WP_011257716.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913488.1;locus_tag=LLC55_RS03925;product=RDD family protein;protein_id=WP_011257716.1;transl_table=11 NZ_CP086200.1 RefSeq gene 817761 818732 . + . ID=gene-LLC55_RS03930;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=LLC55_RS03930;old_locus_tag=LLC55_03930 NZ_CP086200.1 Protein Homology CDS 817761 818732 . + 0 ID=cds-WP_011257717.1;Parent=gene-LLC55_RS03930;Dbxref=Genbank:WP_011257717.1;Name=WP_011257717.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerD;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932805.1;locus_tag=LLC55_RS03930;product=site-specific tyrosine recombinase XerD;protein_id=WP_011257717.1;transl_table=11 NZ_CP086200.1 RefSeq gene 819204 820001 . + . ID=gene-LLC55_RS03935;Name=LLC55_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03935;old_locus_tag=LLC55_03935 NZ_CP086200.1 Protein Homology CDS 819204 820001 . + 0 ID=cds-WP_011257718.1;Parent=gene-LLC55_RS03935;Dbxref=Genbank:WP_011257718.1;Name=WP_011257718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490215.1;locus_tag=LLC55_RS03935;product=DsbC family protein;protein_id=WP_011257718.1;transl_table=11 NZ_CP086200.1 RefSeq gene 820400 824452 . + . ID=gene-LLC55_RS03940;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;gene_synonym=purI;locus_tag=LLC55_RS03940;old_locus_tag=LLC55_03940 NZ_CP086200.1 Protein Homology CDS 820400 824452 . + 0 ID=cds-WP_011257719.1;Parent=gene-LLC55_RS03940;Dbxref=Genbank:WP_011257719.1;Name=WP_011257719.1;Ontology_term=GO:0004642;gbkey=CDS;gene=purL;go_function=phosphoribosylformylglycinamidine synthase activity|0004642||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367790.1;locus_tag=LLC55_RS03940;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_011257719.1;transl_table=11 NZ_CP086200.1 RefSeq gene 825430 829227 . + . ID=gene-LLC55_RS03945;Name=LLC55_RS03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03945;old_locus_tag=LLC55_03945 NZ_CP086200.1 Protein Homology CDS 825430 829227 . + 0 ID=cds-WP_069959728.1;Parent=gene-LLC55_RS03945;Dbxref=Genbank:WP_069959728.1;Name=WP_069959728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113272.1;locus_tag=LLC55_RS03945;product=ESPR-type extended signal peptide-containing protein;protein_id=WP_069959728.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 829448 830635 . + . ID=gene-LLC55_RS03950;Name=LLC55_RS03950;end_range=830635,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03950;old_locus_tag=LLC55_03950;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 829448 830635 . + 0 ID=cds-LLC55_RS03950;Parent=gene-LLC55_RS03950;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006508,GO:0008236;end_range=830635,.;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920748.1;locus_tag=LLC55_RS03950;partial=true;product=S8 family serine peptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 830726 831682 . + . ID=gene-LLC55_RS03955;Name=LLC55_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03955;old_locus_tag=LLC55_03955 NZ_CP086200.1 Protein Homology CDS 830726 831682 . + 0 ID=cds-WP_228329685.1;Parent=gene-LLC55_RS03955;Dbxref=Genbank:WP_228329685.1;Name=WP_228329685.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_082322974.1;locus_tag=LLC55_RS03955;product=IS30 family transposase;protein_id=WP_228329685.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 831691 832388 . + . ID=gene-LLC55_RS03960;Name=LLC55_RS03960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS03960;old_locus_tag=LLC55_03960;partial=true;pseudo=true;start_range=.,831691 NZ_CP086200.1 Protein Homology CDS 831691 832388 . + 0 ID=cds-LLC55_RS03960;Parent=gene-LLC55_RS03960;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920748.1;locus_tag=LLC55_RS03960;partial=true;product=S8 family serine peptidase;pseudo=true;start_range=.,831691;transl_table=11 NZ_CP086200.1 RefSeq gene 832518 834245 . + . ID=gene-LLC55_RS03965;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=LLC55_RS03965;old_locus_tag=LLC55_03965 NZ_CP086200.1 Protein Homology CDS 832518 834245 . + 0 ID=cds-WP_012446069.1;Parent=gene-LLC55_RS03965;Dbxref=Genbank:WP_012446069.1;Name=WP_012446069.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspE;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237945.1;locus_tag=LLC55_RS03965;product=type II secretion system ATPase GspE;protein_id=WP_012446069.1;transl_table=11 NZ_CP086200.1 RefSeq gene 834242 834421 . + . ID=gene-LLC55_RS03970;Name=LLC55_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03970;old_locus_tag=LLC55_03970 NZ_CP086200.1 Protein Homology CDS 834242 834421 . + 0 ID=cds-WP_041181968.1;Parent=gene-LLC55_RS03970;Dbxref=Genbank:WP_041181968.1;Name=WP_041181968.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302117.1;locus_tag=LLC55_RS03970;product=hypothetical protein;protein_id=WP_041181968.1;transl_table=11 NZ_CP086200.1 RefSeq gene 834421 835638 . + . ID=gene-LLC55_RS03975;Name=LLC55_RS03975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03975;old_locus_tag=LLC55_03975 NZ_CP086200.1 Protein Homology CDS 834421 835638 . + 0 ID=cds-WP_011257722.1;Parent=gene-LLC55_RS03975;Dbxref=Genbank:WP_011257722.1;Name=WP_011257722.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504592.1;locus_tag=LLC55_RS03975;product=type II secretion system F family protein;protein_id=WP_011257722.1;transl_table=11 NZ_CP086200.1 RefSeq gene 835906 836337 . + . ID=gene-LLC55_RS03980;Name=gspG;gbkey=Gene;gene=gspG;gene_biotype=protein_coding;locus_tag=LLC55_RS03980;old_locus_tag=LLC55_03980 NZ_CP086200.1 Protein Homology CDS 835906 836337 . + 0 ID=cds-WP_011407642.1;Parent=gene-LLC55_RS03980;Dbxref=Genbank:WP_011407642.1;Name=WP_011407642.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspG;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490502.1;locus_tag=LLC55_RS03980;product=type II secretion system major pseudopilin GspG;protein_id=WP_011407642.1;transl_table=11 NZ_CP086200.1 RefSeq gene 836347 836856 . + . ID=gene-LLC55_RS03985;Name=LLC55_RS03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03985;old_locus_tag=LLC55_03985 NZ_CP086200.1 Protein Homology CDS 836347 836856 . + 0 ID=cds-WP_011257724.1;Parent=gene-LLC55_RS03985;Dbxref=Genbank:WP_011257724.1;Name=WP_011257724.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920744.1;locus_tag=LLC55_RS03985;product=GspH/FimT family pseudopilin;protein_id=WP_011257724.1;transl_table=11 NZ_CP086200.1 RefSeq gene 836853 837269 . + . ID=gene-LLC55_RS03990;Name=LLC55_RS03990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03990;old_locus_tag=LLC55_03990 NZ_CP086200.1 Protein Homology CDS 836853 837269 . + 0 ID=cds-WP_011257725.1;Parent=gene-LLC55_RS03990;Dbxref=Genbank:WP_011257725.1;Name=WP_011257725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257725.1;locus_tag=LLC55_RS03990;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=WP_011257725.1;transl_table=11 NZ_CP086200.1 RefSeq gene 837266 837901 . + . ID=gene-LLC55_RS03995;Name=LLC55_RS03995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS03995;old_locus_tag=LLC55_03995 NZ_CP086200.1 Protein Homology CDS 837266 837901 . + 0 ID=cds-WP_011257726.1;Parent=gene-LLC55_RS03995;Dbxref=Genbank:WP_011257726.1;Name=WP_011257726.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446065.1;locus_tag=LLC55_RS03995;product=type II secretion system protein J;protein_id=WP_011257726.1;transl_table=11 NZ_CP086200.1 RefSeq gene 837898 838749 . + . ID=gene-LLC55_RS04000;Name=LLC55_RS04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04000;old_locus_tag=LLC55_04000 NZ_CP086200.1 Protein Homology CDS 837898 838749 . + 0 ID=cds-WP_011407644.1;Parent=gene-LLC55_RS04000;Dbxref=Genbank:WP_011407644.1;Name=WP_011407644.1;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158144.1;locus_tag=LLC55_RS04000;product=type II secretion system protein GspK;protein_id=WP_011407644.1;transl_table=11 NZ_CP086200.1 RefSeq gene 838746 839867 . + . ID=gene-LLC55_RS04005;Name=LLC55_RS04005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04005;old_locus_tag=LLC55_04005 NZ_CP086200.1 Protein Homology CDS 838746 839867 . + 0 ID=cds-WP_011407645.1;Parent=gene-LLC55_RS04005;Dbxref=Genbank:WP_011407645.1;Name=WP_011407645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504586.1;locus_tag=LLC55_RS04005;product=PilN domain-containing protein;protein_id=WP_011407645.1;transl_table=11 NZ_CP086200.1 RefSeq gene 839851 840504 . + . ID=gene-LLC55_RS04010;Name=gspM;gbkey=Gene;gene=gspM;gene_biotype=protein_coding;locus_tag=LLC55_RS04010;old_locus_tag=LLC55_04010 NZ_CP086200.1 Protein Homology CDS 839851 840504 . + 0 ID=cds-WP_011407646.1;Parent=gene-LLC55_RS04010;Dbxref=Genbank:WP_011407646.1;Name=WP_011407646.1;gbkey=CDS;gene=gspM;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114570.1;locus_tag=LLC55_RS04010;product=type II secretion system protein GspM;protein_id=WP_011407646.1;transl_table=11 NZ_CP086200.1 RefSeq gene 840494 841309 . + . ID=gene-LLC55_RS04015;Name=LLC55_RS04015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04015;old_locus_tag=LLC55_04015 NZ_CP086200.1 Protein Homology CDS 840494 841309 . + 0 ID=cds-WP_011257730.1;Parent=gene-LLC55_RS04015;Dbxref=Genbank:WP_011257730.1;Name=WP_011257730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035909.1;locus_tag=LLC55_RS04015;product=hypothetical protein;protein_id=WP_011257730.1;transl_table=11 NZ_CP086200.1 RefSeq gene 841306 843618 . + . ID=gene-LLC55_RS04020;Name=gspD;gbkey=Gene;gene=gspD;gene_biotype=protein_coding;locus_tag=LLC55_RS04020;old_locus_tag=LLC55_04020 NZ_CP086200.1 Protein Homology CDS 841306 843618 . + 0 ID=cds-WP_011257731.1;Parent=gene-LLC55_RS04020;Dbxref=Genbank:WP_011257731.1;Name=WP_011257731.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspD;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367762.1;locus_tag=LLC55_RS04020;product=type II secretion system secretin GspD;protein_id=WP_011257731.1;transl_table=11 NZ_CP086200.1 RefSeq gene 843615 844454 . + . ID=gene-LLC55_RS04025;Name=LLC55_RS04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04025;old_locus_tag=LLC55_04025 NZ_CP086200.1 Protein Homology CDS 843615 844454 . + 0 ID=cds-WP_011257732.1;Parent=gene-LLC55_RS04025;Dbxref=Genbank:WP_011257732.1;Name=WP_011257732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901897.1;locus_tag=LLC55_RS04025;product=hypothetical protein;protein_id=WP_011257732.1;transl_table=11 NZ_CP086200.1 RefSeq gene 844515 844594 . + . ID=gene-LLC55_RS04030;Name=LLC55_RS04030;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS04030;old_locus_tag=LLC55_04030 NZ_CP086200.1 cmsearch ncRNA 844515 844594 . + . ID=rna-LLC55_RS04030;Parent=gene-LLC55_RS04030;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04030;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 844515 844594 . + . ID=exon-LLC55_RS04030-1;Parent=rna-LLC55_RS04030;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04030;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 844878 845606 . - . ID=gene-LLC55_RS04035;Name=LLC55_RS04035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04035;old_locus_tag=LLC55_04035 NZ_CP086200.1 Protein Homology CDS 844878 845606 . - 0 ID=cds-WP_011257733.1;Parent=gene-LLC55_RS04035;Dbxref=Genbank:WP_011257733.1;Name=WP_011257733.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257733.1;locus_tag=LLC55_RS04035;product=UTRA domain-containing protein;protein_id=WP_011257733.1;transl_table=11 NZ_CP086200.1 RefSeq gene 845712 846287 . - . ID=gene-LLC55_RS04040;Name=pnuC;gbkey=Gene;gene=pnuC;gene_biotype=protein_coding;locus_tag=LLC55_RS04040;old_locus_tag=LLC55_04040 NZ_CP086200.1 Protein Homology CDS 845712 846287 . - 0 ID=cds-WP_011407648.1;Parent=gene-LLC55_RS04040;Dbxref=Genbank:WP_011407648.1;Name=WP_011407648.1;Ontology_term=GO:0015890,GO:0015663,GO:0016020;gbkey=CDS;gene=pnuC;go_component=membrane|0016020||IEA;go_function=nicotinamide mononucleotide transmembrane transporter activity|0015663||IEA;go_process=nicotinamide mononucleotide transport|0015890||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348575.1;locus_tag=LLC55_RS04040;product=nicotinamide riboside transporter PnuC;protein_id=WP_011407648.1;transl_table=11 NZ_CP086200.1 RefSeq gene 846402 846473 . + . ID=gene-LLC55_RS04045;Name=LLC55_RS04045;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS04045;old_locus_tag=LLC55_04045 NZ_CP086200.1 cmsearch ncRNA 846402 846473 . + . ID=rna-LLC55_RS04045;Parent=gene-LLC55_RS04045;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04045;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 846402 846473 . + . ID=exon-LLC55_RS04045-1;Parent=rna-LLC55_RS04045;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04045;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 846663 848825 . - . ID=gene-LLC55_RS04050;Name=LLC55_RS04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04050;old_locus_tag=LLC55_04050 NZ_CP086200.1 Protein Homology CDS 846663 848825 . - 0 ID=cds-WP_011407649.1;Parent=gene-LLC55_RS04050;Dbxref=Genbank:WP_011407649.1;Name=WP_011407649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004429142.1;locus_tag=LLC55_RS04050;product=TonB-dependent receptor;protein_id=WP_011407649.1;transl_table=11 NZ_CP086200.1 RefSeq gene 848861 850018 . - . ID=gene-LLC55_RS04055;Name=LLC55_RS04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04055;old_locus_tag=LLC55_04055 NZ_CP086200.1 Protein Homology CDS 848861 850018 . - 0 ID=cds-WP_011407650.1;Parent=gene-LLC55_RS04055;Dbxref=Genbank:WP_011407650.1;Name=WP_011407650.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300523.1;locus_tag=LLC55_RS04055;product=phosphotransferase;protein_id=WP_011407650.1;transl_table=11 NZ_CP086200.1 RefSeq gene 850629 851468 . + . ID=gene-LLC55_RS04060;Name=LLC55_RS04060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04060;old_locus_tag=LLC55_04060 NZ_CP086200.1 Protein Homology CDS 850629 851468 . + 0 ID=cds-WP_011407652.1;Parent=gene-LLC55_RS04060;Dbxref=Genbank:WP_011407652.1;Name=WP_011407652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174042.1;locus_tag=LLC55_RS04060;product=glycosyltransferase family 2 protein;protein_id=WP_011407652.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 851510 852292 . + . ID=gene-LLC55_RS04065;Name=LLC55_RS04065;end_range=852292,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04065;old_locus_tag=LLC55_04065;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 851510 852292 . + 0 ID=cds-LLC55_RS04065;Parent=gene-LLC55_RS04065;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=852292,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445038.1;locus_tag=LLC55_RS04065;partial=true;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 852397 852504 . - . ID=gene-LLC55_RS04070;Name=LLC55_RS04070;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04070;old_locus_tag=LLC55_04070;partial=true;pseudo=true;start_range=.,852397 NZ_CP086200.1 Protein Homology CDS 852397 852504 . - 0 ID=cds-LLC55_RS04070;Parent=gene-LLC55_RS04070;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445011.1;locus_tag=LLC55_RS04070;partial=true;product=IS1595 family transposase;pseudo=true;start_range=.,852397;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 852542 852823 . + . ID=gene-LLC55_RS04075;Name=LLC55_RS04075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04075;old_locus_tag=LLC55_04075;partial=true;pseudo=true;start_range=.,852542 NZ_CP086200.1 Protein Homology CDS 852542 852823 . + 0 ID=cds-LLC55_RS04075;Parent=gene-LLC55_RS04075;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011238416.1;locus_tag=LLC55_RS04075;partial=true;product=transposase;pseudo=true;start_range=.,852542;transl_table=11 NZ_CP086200.1 RefSeq direct_repeat 852842 857980 . + . ID=id-NZ_CP086200.1:852842..857980;gbkey=repeat_region;inference=COORDINATES: alignment:pilercr:v1.02;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=852842..852872;rpt_unit_seq=gtttcaatccacgcgcccgtgaggacgcgac NZ_CP086200.1 RefSeq gene 858168 858458 . - . ID=gene-LLC55_RS04080;Name=cas2;gbkey=Gene;gene=cas2;gene_biotype=protein_coding;locus_tag=LLC55_RS04080;old_locus_tag=LLC55_04080 NZ_CP086200.1 Protein Homology CDS 858168 858458 . - 0 ID=cds-WP_011257741.1;Parent=gene-LLC55_RS04080;Dbxref=Genbank:WP_011257741.1;Name=WP_011257741.1;Ontology_term=GO:0043571,GO:0004521;gbkey=CDS;gene=cas2;go_function=endoribonuclease activity|0004521||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927092.1;locus_tag=LLC55_RS04080;product=CRISPR-associated endonuclease Cas2;protein_id=WP_011257741.1;transl_table=11 NZ_CP086200.1 RefSeq gene 858473 859507 . - . ID=gene-LLC55_RS04085;Name=cas1c;gbkey=Gene;gene=cas1c;gene_biotype=protein_coding;locus_tag=LLC55_RS04085;old_locus_tag=LLC55_04085 NZ_CP086200.1 Protein Homology CDS 858473 859507 . - 0 ID=cds-WP_011407655.1;Parent=gene-LLC55_RS04085;Dbxref=Genbank:WP_011407655.1;Name=WP_011407655.1;Ontology_term=GO:0043571,GO:0051607,GO:0003676,GO:0004519,GO:0046872;gbkey=CDS;gene=cas1c;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927095.1;locus_tag=LLC55_RS04085;product=type I-C CRISPR-associated endonuclease Cas1c;protein_id=WP_011407655.1;transl_table=11 NZ_CP086200.1 RefSeq gene 859510 860142 . - . ID=gene-LLC55_RS04090;Name=cas4;gbkey=Gene;gene=cas4;gene_biotype=protein_coding;locus_tag=LLC55_RS04090;old_locus_tag=LLC55_04090 NZ_CP086200.1 Protein Homology CDS 859510 860142 . - 0 ID=cds-WP_011257743.1;Parent=gene-LLC55_RS04090;Dbxref=Genbank:WP_011257743.1;Name=WP_011257743.1;Ontology_term=GO:0043571,GO:0004518;gbkey=CDS;gene=cas4;go_function=nuclease activity|0004518||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927098.1;locus_tag=LLC55_RS04090;product=CRISPR-associated protein Cas4;protein_id=WP_011257743.1;transl_table=11 NZ_CP086200.1 RefSeq gene 860162 861028 . - . ID=gene-LLC55_RS04095;Name=cas7c;gbkey=Gene;gene=cas7c;gene_biotype=protein_coding;locus_tag=LLC55_RS04095;old_locus_tag=LLC55_04095 NZ_CP086200.1 Protein Homology CDS 860162 861028 . - 0 ID=cds-WP_011257744.1;Parent=gene-LLC55_RS04095;Dbxref=Genbank:WP_011257744.1;Name=WP_011257744.1;Ontology_term=GO:0043571,GO:0003674;gbkey=CDS;gene=cas7c;go_function=molecular_function|0003674||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372412.1;locus_tag=LLC55_RS04095;product=type I-C CRISPR-associated protein Cas7/Csd2;protein_id=WP_011257744.1;transl_table=11 NZ_CP086200.1 RefSeq gene 861025 862869 . - . ID=gene-LLC55_RS04100;Name=cas8c;gbkey=Gene;gene=cas8c;gene_biotype=protein_coding;locus_tag=LLC55_RS04100;old_locus_tag=LLC55_04100 NZ_CP086200.1 Protein Homology CDS 861025 862869 . - 0 ID=cds-WP_011257745.1;Parent=gene-LLC55_RS04100;Dbxref=Genbank:WP_011257745.1;Name=WP_011257745.1;Ontology_term=GO:0043571,GO:0003674,GO:0005575;gbkey=CDS;gene=cas8c;go_component=cellular_component|0005575||IEA;go_function=molecular_function|0003674||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017119023.1;locus_tag=LLC55_RS04100;product=type I-C CRISPR-associated protein Cas8c/Csd1;protein_id=WP_011257745.1;transl_table=11 NZ_CP086200.1 RefSeq gene 862866 863540 . - . ID=gene-LLC55_RS04105;Name=cas5c;gbkey=Gene;gene=cas5c;gene_biotype=protein_coding;locus_tag=LLC55_RS04105;old_locus_tag=LLC55_04105 NZ_CP086200.1 Protein Homology CDS 862866 863540 . - 0 ID=cds-WP_011257746.1;Parent=gene-LLC55_RS04105;Dbxref=Genbank:WP_011257746.1;Name=WP_011257746.1;Ontology_term=GO:0043571,GO:0003674,GO:0005575;gbkey=CDS;gene=cas5c;go_component=cellular_component|0005575||IEA;go_function=molecular_function|0003674||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003465423.1;locus_tag=LLC55_RS04105;product=type I-C CRISPR-associated protein Cas5c;protein_id=WP_011257746.1;transl_table=11 NZ_CP086200.1 RefSeq gene 863668 865959 . - . ID=gene-LLC55_RS04110;Name=LLC55_RS04110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04110;old_locus_tag=LLC55_04110 NZ_CP086200.1 Protein Homology CDS 863668 865959 . - 0 ID=cds-WP_069960153.1;Parent=gene-LLC55_RS04110;Dbxref=Genbank:WP_069960153.1;Name=WP_069960153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257747.1;locus_tag=LLC55_RS04110;product=CRISPR-associated helicase/endonuclease Cas3;protein_id=WP_069960153.1;transl_table=11 NZ_CP086200.1 RefSeq gene 866071 867036 . + . ID=gene-LLC55_RS04115;Name=LLC55_RS04115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04115;old_locus_tag=LLC55_04115 NZ_CP086200.1 Protein Homology CDS 866071 867036 . + 0 ID=cds-WP_153303305.1;Parent=gene-LLC55_RS04115;Dbxref=Genbank:WP_153303305.1;Name=WP_153303305.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS04115;product=IS1595-like element ISXo5 family transposase;protein_id=WP_153303305.1;transl_table=11 NZ_CP086200.1 RefSeq gene 867427 868002 . - . ID=gene-LLC55_RS04120;Name=LLC55_RS04120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04120;old_locus_tag=LLC55_04120 NZ_CP086200.1 Protein Homology CDS 867427 868002 . - 0 ID=cds-WP_011257750.1;Parent=gene-LLC55_RS04120;Dbxref=Genbank:WP_011257750.1;Name=WP_011257750.1;Ontology_term=GO:0000917,GO:0030428;gbkey=CDS;go_component=cell septum|0030428||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159643.1;locus_tag=LLC55_RS04120;product=Maf family nucleotide pyrophosphatase;protein_id=WP_011257750.1;transl_table=11 NZ_CP086200.1 RefSeq gene 868115 868624 . + . ID=gene-LLC55_RS04125;Name=LLC55_RS04125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04125;old_locus_tag=LLC55_04125 NZ_CP086200.1 Protein Homology CDS 868115 868624 . + 0 ID=cds-WP_011407659.1;Parent=gene-LLC55_RS04125;Dbxref=Genbank:WP_011407659.1;Name=WP_011407659.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814328.1;locus_tag=LLC55_RS04125;product=YceD family protein;protein_id=WP_011407659.1;transl_table=11 NZ_CP086200.1 RefSeq gene 868723 868917 . + . ID=gene-LLC55_RS04130;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=LLC55_RS04130;old_locus_tag=LLC55_04130 NZ_CP086200.1 Protein Homology CDS 868723 868917 . + 0 ID=cds-WP_010368401.1;Parent=gene-LLC55_RS04130;Dbxref=Genbank:WP_010368401.1;Name=WP_010368401.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmF;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302036.1;locus_tag=LLC55_RS04130;product=50S ribosomal protein L32;protein_id=WP_010368401.1;transl_table=11 NZ_CP086200.1 RefSeq gene 869007 869984 . + . ID=gene-LLC55_RS04135;Name=LLC55_RS04135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04135;old_locus_tag=LLC55_04135 NZ_CP086200.1 Protein Homology CDS 869007 869984 . + 0 ID=cds-WP_011257752.1;Parent=gene-LLC55_RS04135;Dbxref=Genbank:WP_011257752.1;Name=WP_011257752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502254.1;locus_tag=LLC55_RS04135;product=ketoacyl-ACP synthase III;protein_id=WP_011257752.1;transl_table=11 NZ_CP086200.1 RefSeq gene 870214 870654 . + . ID=gene-LLC55_RS04140;Name=LLC55_RS04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04140;old_locus_tag=LLC55_04140 NZ_CP086200.1 Protein Homology CDS 870214 870654 . + 0 ID=cds-WP_011257753.1;Parent=gene-LLC55_RS04140;Dbxref=Genbank:WP_011257753.1;Name=WP_011257753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969006.1;locus_tag=LLC55_RS04140;product=MEKHLA domain-containing protein;protein_id=WP_011257753.1;transl_table=11 NZ_CP086200.1 RefSeq gene 870932 871876 . + . ID=gene-LLC55_RS04145;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=LLC55_RS04145;old_locus_tag=LLC55_04145 NZ_CP086200.1 Protein Homology CDS 870932 871876 . + 0 ID=cds-WP_011257754.1;Parent=gene-LLC55_RS04145;Dbxref=Genbank:WP_011257754.1;Name=WP_011257754.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304127.1;locus_tag=LLC55_RS04145;product=ACP S-malonyltransferase;protein_id=WP_011257754.1;transl_table=11 NZ_CP086200.1 RefSeq gene 871959 872702 . + . ID=gene-LLC55_RS04150;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=LLC55_RS04150;old_locus_tag=LLC55_04150 NZ_CP086200.1 Protein Homology CDS 871959 872702 . + 0 ID=cds-WP_011407660.1;Parent=gene-LLC55_RS04150;Dbxref=Genbank:WP_011407660.1;Name=WP_011407660.1;Ontology_term=GO:0006633,GO:0004316,GO:0051287;gbkey=CDS;gene=fabG;go_function=3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|0004316||IEA,NAD binding|0051287||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814323.1;locus_tag=LLC55_RS04150;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_011407660.1;transl_table=11 NZ_CP086200.1 RefSeq gene 872907 873146 . + . ID=gene-LLC55_RS04155;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=LLC55_RS04155;old_locus_tag=LLC55_04155 NZ_CP086200.1 Protein Homology CDS 872907 873146 . + 0 ID=cds-WP_010368407.1;Parent=gene-LLC55_RS04155;Dbxref=Genbank:WP_010368407.1;Name=WP_010368407.1;Ontology_term=GO:0006633;gbkey=CDS;gene=acpP;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013535667.1;locus_tag=LLC55_RS04155;product=acyl carrier protein;protein_id=WP_010368407.1;transl_table=11 NZ_CP086200.1 RefSeq gene 873288 874523 . + . ID=gene-LLC55_RS04160;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=LLC55_RS04160;old_locus_tag=LLC55_04160 NZ_CP086200.1 Protein Homology CDS 873288 874523 . + 0 ID=cds-WP_011407661.1;Parent=gene-LLC55_RS04160;Dbxref=Genbank:WP_011407661.1;Name=WP_011407661.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302031.1;locus_tag=LLC55_RS04160;product=beta-ketoacyl-ACP synthase II;protein_id=WP_011407661.1;transl_table=11 NZ_CP086200.1 RefSeq gene 874694 876049 . + . ID=gene-LLC55_RS04165;Name=LLC55_RS04165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04165;old_locus_tag=LLC55_04165 NZ_CP086200.1 Protein Homology CDS 874694 876049 . + 0 ID=cds-WP_011407662.1;Parent=gene-LLC55_RS04165;Dbxref=Genbank:WP_011407662.1;Name=WP_011407662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160233.1;locus_tag=LLC55_RS04165;product=aminodeoxychorismate synthase component I;protein_id=WP_011407662.1;transl_table=11 NZ_CP086200.1 RefSeq gene 876110 877183 . + . ID=gene-LLC55_RS04170;Name=mltG;gbkey=Gene;gene=mltG;gene_biotype=protein_coding;locus_tag=LLC55_RS04170;old_locus_tag=LLC55_04170 NZ_CP086200.1 Protein Homology CDS 876110 877183 . + 0 ID=cds-WP_011257758.1;Parent=gene-LLC55_RS04170;Dbxref=Genbank:WP_011257758.1;Name=WP_011257758.1;Ontology_term=GO:0009252,GO:0071555,GO:0008932;gbkey=CDS;gene=mltG;go_function=lytic endotransglycosylase activity|0008932||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160234.1;locus_tag=LLC55_RS04170;product=endolytic transglycosylase MltG;protein_id=WP_011257758.1;transl_table=11 NZ_CP086200.1 RefSeq gene 877180 878139 . + . ID=gene-LLC55_RS04175;Name=LLC55_RS04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04175;old_locus_tag=LLC55_04175 NZ_CP086200.1 Protein Homology CDS 877180 878139 . + 0 ID=cds-WP_069959732.1;Parent=gene-LLC55_RS04175;Dbxref=Genbank:WP_069959732.1;Name=WP_069959732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969013.1;locus_tag=LLC55_RS04175;product=DNA polymerase III subunit delta';protein_id=WP_069959732.1;transl_table=11 NZ_CP086200.1 RefSeq gene 878136 878489 . + . ID=gene-LLC55_RS04180;Name=LLC55_RS04180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04180;old_locus_tag=LLC55_04180 NZ_CP086200.1 Protein Homology CDS 878136 878489 . + 0 ID=cds-WP_011257760.1;Parent=gene-LLC55_RS04180;Dbxref=Genbank:WP_011257760.1;Name=WP_011257760.1;Ontology_term=GO:0035438;gbkey=CDS;go_function=cyclic-di-GMP binding|0035438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155784.1;locus_tag=LLC55_RS04180;product=PilZ domain-containing protein;protein_id=WP_011257760.1;transl_table=11 NZ_CP086200.1 RefSeq gene 878766 878840 . + . ID=gene-LLC55_RS04185;Name=LLC55_RS04185;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04185;old_locus_tag=LLC55_04185 NZ_CP086200.1 tRNAscan-SE tRNA 878766 878840 . + . ID=rna-LLC55_RS04185;Parent=gene-LLC55_RS04185;anticodon=(pos:878798..878800);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04185;product=tRNA-Val NZ_CP086200.1 tRNAscan-SE exon 878766 878840 . + . ID=exon-LLC55_RS04185-1;Parent=rna-LLC55_RS04185;anticodon=(pos:878798..878800);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04185;product=tRNA-Val NZ_CP086200.1 RefSeq gene 879192 879974 . + . ID=gene-LLC55_RS04190;Name=LLC55_RS04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04190;old_locus_tag=LLC55_04190 NZ_CP086200.1 GeneMarkS-2+ CDS 879192 879974 . + 0 ID=cds-WP_133261978.1;Parent=gene-LLC55_RS04190;Dbxref=Genbank:WP_133261978.1;Name=WP_133261978.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS04190;product=hypothetical protein;protein_id=WP_133261978.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 880032 880253 . + . ID=gene-LLC55_RS04195;Name=LLC55_RS04195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04195;old_locus_tag=LLC55_04195;partial=true;pseudo=true;start_range=.,880032 NZ_CP086200.1 Protein Homology CDS 880032 880253 . + 0 ID=cds-LLC55_RS04195;Parent=gene-LLC55_RS04195;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160235.1;locus_tag=LLC55_RS04195;partial=true;product=hypothetical protein;pseudo=true;start_range=.,880032;transl_table=11 NZ_CP086200.1 RefSeq gene 880336 880662 . + . ID=gene-LLC55_RS04200;Name=LLC55_RS04200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04200;old_locus_tag=LLC55_04200 NZ_CP086200.1 Protein Homology CDS 880336 880662 . + 0 ID=cds-WP_011407665.1;Parent=gene-LLC55_RS04200;Dbxref=Genbank:WP_011407665.1;Name=WP_011407665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089549.1;locus_tag=LLC55_RS04200;product=hypothetical protein;protein_id=WP_011407665.1;transl_table=11 NZ_CP086200.1 RefSeq gene 880898 882496 . - . ID=gene-LLC55_RS04205;Name=prpR;gbkey=Gene;gene=prpR;gene_biotype=protein_coding;locus_tag=LLC55_RS04205;old_locus_tag=LLC55_04205 NZ_CP086200.1 Protein Homology CDS 880898 882496 . - 0 ID=cds-WP_041181972.1;Parent=gene-LLC55_RS04205;Dbxref=Genbank:WP_041181972.1;Name=WP_041181972.1;gbkey=CDS;gene=prpR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502265.1;locus_tag=LLC55_RS04205;product=propionate catabolism operon regulatory protein PrpR;protein_id=WP_041181972.1;transl_table=11 NZ_CP086200.1 RefSeq gene 882642 883538 . + . ID=gene-LLC55_RS04210;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=protein_coding;locus_tag=LLC55_RS04210;old_locus_tag=LLC55_04210 NZ_CP086200.1 Protein Homology CDS 882642 883538 . + 0 ID=cds-WP_011257763.1;Parent=gene-LLC55_RS04210;Dbxref=Genbank:WP_011257763.1;Name=WP_011257763.1;Ontology_term=GO:0019629,GO:0046421;gbkey=CDS;gene=prpB;go_function=methylisocitrate lyase activity|0046421||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257763.1;locus_tag=LLC55_RS04210;product=methylisocitrate lyase;protein_id=WP_011257763.1;transl_table=11 NZ_CP086200.1 RefSeq gene 883614 884768 . + . ID=gene-LLC55_RS04215;Name=prpC;gbkey=Gene;gene=prpC;gene_biotype=protein_coding;locus_tag=LLC55_RS04215;old_locus_tag=LLC55_04215 NZ_CP086200.1 Protein Homology CDS 883614 884768 . + 0 ID=cds-WP_011407667.1;Parent=gene-LLC55_RS04215;Dbxref=Genbank:WP_011407667.1;Name=WP_011407667.1;Ontology_term=GO:0050440;gbkey=CDS;gene=prpC;go_function=2-methylcitrate synthase activity|0050440||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502267.1;locus_tag=LLC55_RS04215;product=2-methylcitrate synthase;protein_id=WP_011407667.1;transl_table=11 NZ_CP086200.1 RefSeq gene 884956 887547 . + . ID=gene-LLC55_RS04220;Name=acnD;gbkey=Gene;gene=acnD;gene_biotype=protein_coding;locus_tag=LLC55_RS04220;old_locus_tag=LLC55_04220 NZ_CP086200.1 Protein Homology CDS 884956 887547 . + 0 ID=cds-WP_069963828.1;Parent=gene-LLC55_RS04220;Dbxref=Genbank:WP_069963828.1;Name=WP_069963828.1;Ontology_term=GO:0019629,GO:0047456;gbkey=CDS;gene=acnD;go_function=2-methylisocitrate dehydratase activity|0047456||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849833.1;locus_tag=LLC55_RS04220;product=Fe/S-dependent 2-methylisocitrate dehydratase AcnD;protein_id=WP_069963828.1;transl_table=11 NZ_CP086200.1 RefSeq gene 887631 887798 . + . ID=gene-LLC55_RS04225;Name=LLC55_RS04225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04225;old_locus_tag=LLC55_04225 NZ_CP086200.1 Protein Homology CDS 887631 887798 . + 0 ID=cds-WP_012446043.1;Parent=gene-LLC55_RS04225;Dbxref=Genbank:WP_012446043.1;Name=WP_012446043.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502269.1;locus_tag=LLC55_RS04225;product=hypothetical protein;protein_id=WP_012446043.1;transl_table=11 NZ_CP086200.1 RefSeq gene 887870 888007 . + . ID=gene-LLC55_RS04230;Name=LLC55_RS04230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04230;old_locus_tag=LLC55_04230 NZ_CP086200.1 Protein Homology CDS 887870 888007 . + 0 ID=cds-WP_011407669.1;Parent=gene-LLC55_RS04230;Dbxref=Genbank:WP_011407669.1;Name=WP_011407669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502270.1;locus_tag=LLC55_RS04230;product=hypothetical protein;protein_id=WP_011407669.1;transl_table=11 NZ_CP086200.1 RefSeq gene 888280 889479 . + . ID=gene-LLC55_RS04235;Name=prpF;gbkey=Gene;gene=prpF;gene_biotype=protein_coding;locus_tag=LLC55_RS04235;old_locus_tag=LLC55_04235 NZ_CP086200.1 Protein Homology CDS 888280 889479 . + 0 ID=cds-WP_069960159.1;Parent=gene-LLC55_RS04235;Dbxref=Genbank:WP_069960159.1;Name=WP_069960159.1;Ontology_term=GO:0019629;gbkey=CDS;gene=prpF;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502272.1;locus_tag=LLC55_RS04235;product=2-methylaconitate cis-trans isomerase PrpF;protein_id=WP_069960159.1;transl_table=11 NZ_CP086200.1 RefSeq gene 889929 890897 . - . ID=gene-LLC55_RS04240;Name=LLC55_RS04240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04240;old_locus_tag=LLC55_04240 NZ_CP086200.1 Protein Homology CDS 889929 890897 . - 0 ID=cds-WP_011409545.1;Parent=gene-LLC55_RS04240;Dbxref=Genbank:WP_011409545.1;Name=WP_011409545.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS04240;product=IS5-like element ISXo1 family transposase;protein_id=WP_011409545.1;transl_table=11 NZ_CP086200.1 RefSeq gene 891139 893355 . + . ID=gene-LLC55_RS04245;Name=LLC55_RS04245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04245;old_locus_tag=LLC55_04245 NZ_CP086200.1 Protein Homology CDS 891139 893355 . + 0 ID=cds-WP_011407672.1;Parent=gene-LLC55_RS04245;Dbxref=Genbank:WP_011407672.1;Name=WP_011407672.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305008.1;locus_tag=LLC55_RS04245;product=TonB-dependent receptor;protein_id=WP_011407672.1;transl_table=11 NZ_CP086200.1 RefSeq gene 893434 894432 . + . ID=gene-LLC55_RS04250;Name=LLC55_RS04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04250;old_locus_tag=LLC55_04250 NZ_CP086200.1 Protein Homology CDS 893434 894432 . + 0 ID=cds-WP_011407673.1;Parent=gene-LLC55_RS04250;Dbxref=Genbank:WP_011407673.1;Name=WP_011407673.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089556.1;locus_tag=LLC55_RS04250;product=nucleoside hydrolase;protein_id=WP_011407673.1;transl_table=11 NZ_CP086200.1 RefSeq gene 894542 894724 . - . ID=gene-LLC55_RS04255;Name=LLC55_RS04255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04255;old_locus_tag=LLC55_04255 NZ_CP086200.1 Protein Homology CDS 894542 894724 . - 0 ID=cds-WP_103057250.1;Parent=gene-LLC55_RS04255;Dbxref=Genbank:WP_103057250.1;Name=WP_103057250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913246.1;locus_tag=LLC55_RS04255;product=hypothetical protein;protein_id=WP_103057250.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 895027 895493 . + . ID=gene-LLC55_RS04260;Name=LLC55_RS04260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04260;old_locus_tag=LLC55_04260;pseudo=true NZ_CP086200.1 Protein Homology CDS 895027 895493 . + 0 ID=cds-LLC55_RS04260;Parent=gene-LLC55_RS04260;Note=frameshifted;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913955.1;locus_tag=LLC55_RS04260;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 895567 896535 . + . ID=gene-LLC55_RS04265;Name=LLC55_RS04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04265;old_locus_tag=LLC55_04265 NZ_CP086200.1 Protein Homology CDS 895567 896535 . + 0 ID=cds-WP_011258802.1-2;Parent=gene-LLC55_RS04265;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS04265;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 896864 899851 . + . ID=gene-LLC55_RS04270;Name=LLC55_RS04270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04270;old_locus_tag=LLC55_04270 NZ_CP086200.1 Protein Homology CDS 896864 899851 . + 0 ID=cds-WP_069964984.1;Parent=gene-LLC55_RS04270;Dbxref=Genbank:WP_069964984.1;Name=WP_069964984.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483916.1;locus_tag=LLC55_RS04270;product=TonB-dependent receptor;protein_id=WP_069964984.1;transl_table=11 NZ_CP086200.1 RefSeq gene 900026 900973 . + . ID=gene-LLC55_RS04275;Name=LLC55_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04275;old_locus_tag=LLC55_04275 NZ_CP086200.1 Protein Homology CDS 900026 900973 . + 0 ID=cds-WP_041182786.1;Parent=gene-LLC55_RS04275;Dbxref=Genbank:WP_041182786.1;Name=WP_041182786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944837.1;locus_tag=LLC55_RS04275;product=glycerophosphodiester phosphodiesterase family protein;protein_id=WP_041182786.1;transl_table=11 NZ_CP086200.1 RefSeq gene 901332 902009 . + . ID=gene-LLC55_RS04280;Name=LLC55_RS04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04280;old_locus_tag=LLC55_04280 NZ_CP086200.1 Protein Homology CDS 901332 902009 . + 0 ID=cds-WP_228329686.1;Parent=gene-LLC55_RS04280;Dbxref=Genbank:WP_228329686.1;Name=WP_228329686.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257774.1;locus_tag=LLC55_RS04280;product=hypothetical protein;protein_id=WP_228329686.1;transl_table=11 NZ_CP086200.1 RefSeq gene 902080 903399 . + . ID=gene-LLC55_RS04285;Name=LLC55_RS04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04285;old_locus_tag=LLC55_04285 NZ_CP086200.1 Protein Homology CDS 902080 903399 . + 0 ID=cds-WP_228329687.1;Parent=gene-LLC55_RS04285;Dbxref=Genbank:WP_228329687.1;Name=WP_228329687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS04285;product=IS701-like element ISXo15 family transposase;protein_id=WP_228329687.1;transl_table=11 NZ_CP086200.1 RefSeq gene 903549 903625 . + . ID=gene-LLC55_RS04290;Name=LLC55_RS04290;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS04290;old_locus_tag=LLC55_04290 NZ_CP086200.1 cmsearch ncRNA 903549 903625 . + . ID=rna-LLC55_RS04290;Parent=gene-LLC55_RS04290;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04290;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 903549 903625 . + . ID=exon-LLC55_RS04290-1;Parent=rna-LLC55_RS04290;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04290;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 903744 904706 . + . ID=gene-LLC55_RS04295;Name=LLC55_RS04295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04295;old_locus_tag=LLC55_04295 NZ_CP086200.1 Protein Homology CDS 903744 904706 . + 0 ID=cds-WP_075243999.1;Parent=gene-LLC55_RS04295;Dbxref=Genbank:WP_075243999.1;Name=WP_075243999.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407678.1;locus_tag=LLC55_RS04295;product=IS30 family transposase;protein_id=WP_075243999.1;transl_table=11 NZ_CP086200.1 RefSeq gene 904840 905400 . - . ID=gene-LLC55_RS04300;Name=LLC55_RS04300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04300;old_locus_tag=LLC55_04300 NZ_CP086200.1 Protein Homology CDS 904840 905400 . - 0 ID=cds-WP_011257778.1;Parent=gene-LLC55_RS04300;Dbxref=Genbank:WP_011257778.1;Name=WP_011257778.1;Ontology_term=GO:0008199;gbkey=CDS;go_function=ferric iron binding|0008199||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996162.1;locus_tag=LLC55_RS04300;product=ferritin-like domain-containing protein;protein_id=WP_011257778.1;transl_table=11 NZ_CP086200.1 RefSeq gene 905443 905925 . - . ID=gene-LLC55_RS04305;Name=LLC55_RS04305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04305;old_locus_tag=LLC55_04305 NZ_CP086200.1 Protein Homology CDS 905443 905925 . - 0 ID=cds-WP_011257779.1;Parent=gene-LLC55_RS04305;Dbxref=Genbank:WP_011257779.1;Name=WP_011257779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155767.1;locus_tag=LLC55_RS04305;product=peroxiredoxin;protein_id=WP_011257779.1;transl_table=11 NZ_CP086200.1 RefSeq gene 906088 906564 . + . ID=gene-LLC55_RS04310;Name=LLC55_RS04310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04310;old_locus_tag=LLC55_04310 NZ_CP086200.1 Protein Homology CDS 906088 906564 . + 0 ID=cds-WP_011407679.1;Parent=gene-LLC55_RS04310;Dbxref=Genbank:WP_011407679.1;Name=WP_011407679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155766.1;locus_tag=LLC55_RS04310;product=Hsp20/alpha crystallin family protein;protein_id=WP_011407679.1;transl_table=11 NZ_CP086200.1 RefSeq gene 906975 907874 . + . ID=gene-LLC55_RS04315;Name=LLC55_RS04315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04315;old_locus_tag=LLC55_04315 NZ_CP086200.1 Protein Homology CDS 906975 907874 . + 0 ID=cds-WP_011257781.1;Parent=gene-LLC55_RS04315;Dbxref=Genbank:WP_011257781.1;Name=WP_011257781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257781.1;locus_tag=LLC55_RS04315;product=DnaJ domain-containing protein;protein_id=WP_011257781.1;transl_table=11 NZ_CP086200.1 RefSeq gene 908114 908500 . + . ID=gene-LLC55_RS04320;Name=pilH;gbkey=Gene;gene=pilH;gene_biotype=protein_coding;locus_tag=LLC55_RS04320;old_locus_tag=LLC55_04320 NZ_CP086200.1 Protein Homology CDS 908114 908500 . + 0 ID=cds-WP_011257782.1;Parent=gene-LLC55_RS04320;Dbxref=Genbank:WP_011257782.1;Name=WP_011257782.1;gbkey=CDS;gene=pilH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036249.1;locus_tag=LLC55_RS04320;product=twitching motility response regulator PilH;protein_id=WP_011257782.1;transl_table=11 NZ_CP086200.1 RefSeq gene 909130 910257 . + . ID=gene-LLC55_RS04325;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=LLC55_RS04325;old_locus_tag=LLC55_04325 NZ_CP086200.1 Protein Homology CDS 909130 910257 . + 0 ID=cds-WP_011407680.1;Parent=gene-LLC55_RS04325;Dbxref=Genbank:WP_011407680.1;Name=WP_011407680.1;Ontology_term=GO:0045861,GO:0003674,GO:0030288;gbkey=CDS;gene=hflK;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=molecular_function|0003674||IEA;go_process=negative regulation of proteolysis|0045861||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920523.1;locus_tag=LLC55_RS04325;product=FtsH protease activity modulator HflK;protein_id=WP_011407680.1;transl_table=11 NZ_CP086200.1 RefSeq gene 910257 911120 . + . ID=gene-LLC55_RS04330;Name=hflC;gbkey=Gene;gene=hflC;gene_biotype=protein_coding;locus_tag=LLC55_RS04330;old_locus_tag=LLC55_04330 NZ_CP086200.1 Protein Homology CDS 910257 911120 . + 0 ID=cds-WP_011257784.1;Parent=gene-LLC55_RS04330;Dbxref=Genbank:WP_011257784.1;Name=WP_011257784.1;Ontology_term=GO:0045861,GO:0003674,GO:0030288;gbkey=CDS;gene=hflC;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=molecular_function|0003674||IEA;go_process=negative regulation of proteolysis|0045861||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449475.1;locus_tag=LLC55_RS04330;product=protease modulator HflC;protein_id=WP_011257784.1;transl_table=11 NZ_CP086200.1 RefSeq gene 911414 911599 . + . ID=gene-LLC55_RS04335;Name=LLC55_RS04335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04335;old_locus_tag=LLC55_04335 NZ_CP086200.1 Protein Homology CDS 911414 911599 . + 0 ID=cds-WP_011257785.1;Parent=gene-LLC55_RS04335;Dbxref=Genbank:WP_011257785.1;Name=WP_011257785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257785.1;locus_tag=LLC55_RS04335;product=DUF2065 family protein;protein_id=WP_011257785.1;transl_table=11 NZ_CP086200.1 RefSeq gene 911937 913229 . + . ID=gene-LLC55_RS04340;Name=LLC55_RS04340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04340;old_locus_tag=LLC55_04340 NZ_CP086200.1 Protein Homology CDS 911937 913229 . + 0 ID=cds-WP_011407681.1;Parent=gene-LLC55_RS04340;Dbxref=Genbank:WP_011407681.1;Name=WP_011407681.1;Ontology_term=GO:0006164,GO:0004019,GO:0005525;gbkey=CDS;go_function=adenylosuccinate synthase activity|0004019||IEA,GTP binding|0005525||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903917.1;locus_tag=LLC55_RS04340;product=adenylosuccinate synthase;protein_id=WP_011407681.1;transl_table=11 NZ_CP086200.1 RefSeq gene 913555 916227 . + . ID=gene-LLC55_RS04345;Name=LLC55_RS04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04345;old_locus_tag=LLC55_04345 NZ_CP086200.1 Protein Homology CDS 913555 916227 . + 0 ID=cds-WP_011407682.1;Parent=gene-LLC55_RS04345;Dbxref=Genbank:WP_011407682.1;Name=WP_011407682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368450.1;locus_tag=LLC55_RS04345;product=M1 family metallopeptidase;protein_id=WP_011407682.1;transl_table=11 NZ_CP086200.1 RefSeq gene 916421 916699 . - . ID=gene-LLC55_RS04350;Name=LLC55_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04350;old_locus_tag=LLC55_04350 NZ_CP086200.1 Protein Homology CDS 916421 916699 . - 0 ID=cds-WP_033013340.1;Parent=gene-LLC55_RS04350;Dbxref=Genbank:WP_033013340.1;Name=WP_033013340.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: protein motif:HMM:NF020421.2;locus_tag=LLC55_RS04350;product=SymE family type I addiction module toxin;protein_id=WP_033013340.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 916715 917203 . - . ID=gene-LLC55_RS04355;Name=LLC55_RS04355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04355;old_locus_tag=LLC55_04355;partial=true;pseudo=true;start_range=.,916715 NZ_CP086200.1 Protein Homology CDS 916715 917203 . - 0 ID=cds-LLC55_RS04355;Parent=gene-LLC55_RS04355;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259790.1;locus_tag=LLC55_RS04355;partial=true;product=IS1595 family transposase;pseudo=true;start_range=.,916715;transl_table=11 NZ_CP086200.1 RefSeq gene 917314 918690 . - . ID=gene-LLC55_RS04360;Name=LLC55_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04360;old_locus_tag=LLC55_04360 NZ_CP086200.1 Protein Homology CDS 917314 918690 . - 0 ID=cds-WP_011407683.1;Parent=gene-LLC55_RS04360;Dbxref=Genbank:WP_011407683.1;Name=WP_011407683.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS04360;product=IS5 family transposase;protein_id=WP_011407683.1;transl_table=11 NZ_CP086200.1 RefSeq gene 918934 919569 . + . ID=gene-LLC55_RS04365;Name=LLC55_RS04365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04365;old_locus_tag=LLC55_04365 NZ_CP086200.1 Protein Homology CDS 918934 919569 . + 0 ID=cds-WP_011257791.1;Parent=gene-LLC55_RS04365;Dbxref=Genbank:WP_011257791.1;Name=WP_011257791.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303840.1;locus_tag=LLC55_RS04365;product=helix-turn-helix domain-containing protein;protein_id=WP_011257791.1;transl_table=11 NZ_CP086200.1 RefSeq gene 919569 920006 . + . ID=gene-LLC55_RS04370;Name=LLC55_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04370;old_locus_tag=LLC55_04370 NZ_CP086200.1 GeneMarkS-2+ CDS 919569 920006 . + 0 ID=cds-WP_011257792.1;Parent=gene-LLC55_RS04370;Dbxref=Genbank:WP_011257792.1;Name=WP_011257792.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS04370;product=hypothetical protein;protein_id=WP_011257792.1;transl_table=11 NZ_CP086200.1 RefSeq gene 920289 920729 . + . ID=gene-LLC55_RS04375;Name=LLC55_RS04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04375;old_locus_tag=LLC55_04375 NZ_CP086200.1 Protein Homology CDS 920289 920729 . + 0 ID=cds-WP_228329688.1;Parent=gene-LLC55_RS04375;Dbxref=Genbank:WP_228329688.1;Name=WP_228329688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365472.1;locus_tag=LLC55_RS04375;product=PH domain-containing protein;protein_id=WP_228329688.1;transl_table=11 NZ_CP086200.1 RefSeq gene 920913 921881 . - . ID=gene-LLC55_RS04380;Name=LLC55_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04380;old_locus_tag=LLC55_04380 NZ_CP086200.1 Protein Homology CDS 920913 921881 . - 0 ID=cds-WP_011258529.1-2;Parent=gene-LLC55_RS04380;Dbxref=Genbank:WP_011258529.1;Name=WP_011258529.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS04380;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258529.1;transl_table=11 NZ_CP086200.1 RefSeq gene 922015 922212 . + . ID=gene-LLC55_RS04385;Name=LLC55_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04385;old_locus_tag=LLC55_04385 NZ_CP086200.1 Protein Homology CDS 922015 922212 . + 0 ID=cds-WP_011257793.1;Parent=gene-LLC55_RS04385;Dbxref=Genbank:WP_011257793.1;Name=WP_011257793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483377.1;locus_tag=LLC55_RS04385;product=zinc-finger domain-containing protein;protein_id=WP_011257793.1;transl_table=11 NZ_CP086200.1 RefSeq gene 922222 923334 . + . ID=gene-LLC55_RS04390;Name=LLC55_RS04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04390;old_locus_tag=LLC55_04390 NZ_CP086200.1 Protein Homology CDS 922222 923334 . + 0 ID=cds-WP_011407685.1;Parent=gene-LLC55_RS04390;Dbxref=Genbank:WP_011407685.1;Name=WP_011407685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483375.1;locus_tag=LLC55_RS04390;product=glycosyltransferase;protein_id=WP_011407685.1;transl_table=11 NZ_CP086200.1 RefSeq gene 923315 924649 . + . ID=gene-LLC55_RS04395;Name=LLC55_RS04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04395;old_locus_tag=LLC55_04395 NZ_CP086200.1 Protein Homology CDS 923315 924649 . + 0 ID=cds-WP_011257795.1;Parent=gene-LLC55_RS04395;Dbxref=Genbank:WP_011257795.1;Name=WP_011257795.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257795.1;locus_tag=LLC55_RS04395;product=O-antigen ligase;protein_id=WP_011257795.1;transl_table=11 NZ_CP086200.1 RefSeq gene 924883 925803 . - . ID=gene-LLC55_RS04400;Name=LLC55_RS04400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04400;old_locus_tag=LLC55_04400 NZ_CP086200.1 Protein Homology CDS 924883 925803 . - 0 ID=cds-WP_011257796.1;Parent=gene-LLC55_RS04400;Dbxref=Genbank:WP_011257796.1;Name=WP_011257796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967748.1;locus_tag=LLC55_RS04400;product=LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase;protein_id=WP_011257796.1;transl_table=11 NZ_CP086200.1 RefSeq gene 925880 927196 . + . ID=gene-LLC55_RS04405;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=LLC55_RS04405;old_locus_tag=LLC55_04405 NZ_CP086200.1 Protein Homology CDS 925880 927196 . + 0 ID=cds-WP_011257797.1;Parent=gene-LLC55_RS04405;Dbxref=Genbank:WP_011257797.1;Name=WP_011257797.1;Ontology_term=GO:0016740;gbkey=CDS;gene=waaA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573684.1;locus_tag=LLC55_RS04405;product=lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_011257797.1;transl_table=11 NZ_CP086200.1 RefSeq gene 927469 928848 . - . ID=gene-LLC55_RS04410;Name=LLC55_RS04410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04410;old_locus_tag=LLC55_04410 NZ_CP086200.1 Protein Homology CDS 927469 928848 . - 0 ID=cds-WP_011257798.1;Parent=gene-LLC55_RS04410;Dbxref=Genbank:WP_011257798.1;Name=WP_011257798.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364366.1;locus_tag=LLC55_RS04410;product=TolC family outer membrane protein;protein_id=WP_011257798.1;transl_table=11 NZ_CP086200.1 RefSeq gene 928869 929525 . - . ID=gene-LLC55_RS04415;Name=LLC55_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04415;old_locus_tag=LLC55_04415 NZ_CP086200.1 Protein Homology CDS 928869 929525 . - 0 ID=cds-WP_011407686.1;Parent=gene-LLC55_RS04415;Dbxref=Genbank:WP_011407686.1;Name=WP_011407686.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804883.1;locus_tag=LLC55_RS04415;product=protein-L-isoaspartate O-methyltransferase;protein_id=WP_011407686.1;transl_table=11 NZ_CP086200.1 RefSeq gene 929654 930307 . - . ID=gene-LLC55_RS04420;Name=LLC55_RS04420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04420;old_locus_tag=LLC55_04420 NZ_CP086200.1 Protein Homology CDS 929654 930307 . - 0 ID=cds-WP_011257800.1;Parent=gene-LLC55_RS04420;Dbxref=Genbank:WP_011257800.1;Name=WP_011257800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167389.1;locus_tag=LLC55_RS04420;product=TetR/AcrR family transcriptional regulator;protein_id=WP_011257800.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 930527 931854 . + . ID=gene-LLC55_RS23435;Name=LLC55_RS23435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23435;old_locus_tag=LLC55_04425;pseudo=true NZ_CP086200.1 Protein Homology CDS 930527 931854 . + 0 ID=cds-LLC55_RS23435;Parent=gene-LLC55_RS23435;Note=frameshifted%3B internal stop;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967738.1;locus_tag=LLC55_RS23435;product=diguanylate cyclase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 932099 932983 . - . ID=gene-LLC55_RS04430;Name=LLC55_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04430;old_locus_tag=LLC55_04430 NZ_CP086200.1 Protein Homology CDS 932099 932983 . - 0 ID=cds-WP_069963917.1;Parent=gene-LLC55_RS04430;Dbxref=Genbank:WP_069963917.1;Name=WP_069963917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849465.1;locus_tag=LLC55_RS04430;product=LysR family transcriptional regulator;protein_id=WP_069963917.1;transl_table=11 NZ_CP086200.1 RefSeq gene 933104 934552 . + . ID=gene-LLC55_RS04435;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=LLC55_RS04435;old_locus_tag=LLC55_04435 NZ_CP086200.1 Protein Homology CDS 933104 934552 . + 0 ID=cds-WP_011257806.1;Parent=gene-LLC55_RS04435;Dbxref=Genbank:WP_011257806.1;Name=WP_011257806.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091005.1;locus_tag=LLC55_RS04435;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_011257806.1;transl_table=11 NZ_CP086200.1 RefSeq gene 934620 935267 . + . ID=gene-LLC55_RS04440;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=LLC55_RS04440;old_locus_tag=LLC55_04440 NZ_CP086200.1 Protein Homology CDS 934620 935267 . + 0 ID=cds-WP_011257807.1;Parent=gene-LLC55_RS04440;Dbxref=Genbank:WP_011257807.1;Name=WP_011257807.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301096.1;locus_tag=LLC55_RS04440;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_011257807.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 935264 936047 . + . ID=gene-LLC55_RS04445;Name=LLC55_RS04445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04445;old_locus_tag=LLC55_04445;pseudo=true NZ_CP086200.1 Protein Homology CDS 935264 936047 . + 0 ID=cds-LLC55_RS04445;Parent=gene-LLC55_RS04445;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446015.1;locus_tag=LLC55_RS04445;product=class I SAM-dependent methyltransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 936084 937157 . + . ID=gene-LLC55_RS04450;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=LLC55_RS04450;old_locus_tag=LLC55_04450 NZ_CP086200.1 Protein Homology CDS 936084 937157 . + 0 ID=cds-WP_011257808.1;Parent=gene-LLC55_RS04450;Dbxref=Genbank:WP_011257808.1;Name=WP_011257808.1;Ontology_term=GO:0009098,GO:0003862;gbkey=CDS;gene=leuB;go_function=3-isopropylmalate dehydrogenase activity|0003862||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912018.1;locus_tag=LLC55_RS04450;product=3-isopropylmalate dehydrogenase;protein_id=WP_011257808.1;transl_table=11 NZ_CP086200.1 RefSeq gene 937488 939050 . - . ID=gene-LLC55_RS04455;Name=LLC55_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04455;old_locus_tag=LLC55_04455 NZ_CP086200.1 Protein Homology CDS 937488 939050 . - 0 ID=cds-WP_011407690.1;Parent=gene-LLC55_RS04455;Dbxref=Genbank:WP_011407690.1;Name=WP_011407690.1;Ontology_term=GO:0009098,GO:0019752,GO:0003852;gbkey=CDS;go_function=2-isopropylmalate synthase activity|0003852||IEA;go_process=leucine biosynthetic process|0009098||IEA,carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156818.1;locus_tag=LLC55_RS04455;product=2-isopropylmalate synthase;protein_id=WP_011407690.1;transl_table=11 NZ_CP086200.1 RefSeq gene 939047 940117 . - . ID=gene-LLC55_RS04460;Name=LLC55_RS04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04460;old_locus_tag=LLC55_04460 NZ_CP086200.1 Protein Homology CDS 939047 940117 . - 0 ID=cds-WP_012446012.1;Parent=gene-LLC55_RS04460;Dbxref=Genbank:WP_012446012.1;Name=WP_012446012.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912014.1;locus_tag=LLC55_RS04460;product=threonine dehydratase;protein_id=WP_012446012.1;transl_table=11 NZ_CP086200.1 RefSeq gene 940247 940504 . - . ID=gene-LLC55_RS04465;Name=LLC55_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04465;old_locus_tag=LLC55_04465 NZ_CP086200.1 Protein Homology CDS 940247 940504 . - 0 ID=cds-WP_011257810.1;Parent=gene-LLC55_RS04465;Dbxref=Genbank:WP_011257810.1;Name=WP_011257810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504505.1;locus_tag=LLC55_RS04465;product=acetolactate synthase;protein_id=WP_011257810.1;transl_table=11 NZ_CP086200.1 RefSeq gene 940488 942209 . - . ID=gene-LLC55_RS04470;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;locus_tag=LLC55_RS04470;old_locus_tag=LLC55_04470 NZ_CP086200.1 Protein Homology CDS 940488 942209 . - 0 ID=cds-WP_011257811.1;Parent=gene-LLC55_RS04470;Dbxref=Genbank:WP_011257811.1;Name=WP_011257811.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvG;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804901.1;locus_tag=LLC55_RS04470;product=acetolactate synthase 2 catalytic subunit;protein_id=WP_011257811.1;transl_table=11 NZ_CP086200.1 RefSeq gene 942253 943254 . - . ID=gene-LLC55_RS04475;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=LLC55_RS04475;old_locus_tag=LLC55_04475 NZ_CP086200.1 Protein Homology CDS 942253 943254 . - 0 ID=cds-WP_011257812.1;Parent=gene-LLC55_RS04475;Dbxref=Genbank:WP_011257812.1;Name=WP_011257812.1;gbkey=CDS;gene=ilvC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504503.1;locus_tag=LLC55_RS04475;product=ketol-acid reductoisomerase;protein_id=WP_011257812.1;transl_table=11 NZ_CP086200.1 RefSeq gene 943949 944025 . + . ID=gene-LLC55_RS04480;Name=LLC55_RS04480;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS04480;old_locus_tag=LLC55_04480 NZ_CP086200.1 cmsearch ncRNA 943949 944025 . + . ID=rna-LLC55_RS04480;Parent=gene-LLC55_RS04480;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04480;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 943949 944025 . + . ID=exon-LLC55_RS04480-1;Parent=rna-LLC55_RS04480;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04480;product=sX9 sRNA NZ_CP086200.1 cmsearch riboswitch 944342 944439 . + . ID=id-NZ_CP086200.1:944342..944439;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP086200.1 RefSeq gene 944531 946408 . + . ID=gene-LLC55_RS04485;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=LLC55_RS04485;old_locus_tag=LLC55_04485 NZ_CP086200.1 Protein Homology CDS 944531 946408 . + 0 ID=cds-WP_011407693.1;Parent=gene-LLC55_RS04485;Dbxref=Genbank:WP_011407693.1;Name=WP_011407693.1;Ontology_term=GO:0009228,GO:0051536;gbkey=CDS;gene=thiC;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407693.1;locus_tag=LLC55_RS04485;product=phosphomethylpyrimidine synthase ThiC;protein_id=WP_011407693.1;transl_table=11 NZ_CP086200.1 RefSeq gene 946834 949185 . + . ID=gene-LLC55_RS04490;Name=LLC55_RS04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04490;old_locus_tag=LLC55_04490 NZ_CP086200.1 Protein Homology CDS 946834 949185 . + 0 ID=cds-WP_011407694.1;Parent=gene-LLC55_RS04490;Dbxref=Genbank:WP_011407694.1;Name=WP_011407694.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364401.1;locus_tag=LLC55_RS04490;product=winged helix-turn-helix domain-containing protein;protein_id=WP_011407694.1;transl_table=11 NZ_CP086200.1 RefSeq gene 949296 950189 . + . ID=gene-LLC55_RS04495;Name=LLC55_RS04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04495;old_locus_tag=LLC55_04495 NZ_CP086200.1 Protein Homology CDS 949296 950189 . + 0 ID=cds-WP_011407695.1;Parent=gene-LLC55_RS04495;Dbxref=Genbank:WP_011407695.1;Name=WP_011407695.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573718.1;locus_tag=LLC55_RS04495;product=helix-turn-helix domain-containing protein;protein_id=WP_011407695.1;transl_table=11 NZ_CP086200.1 RefSeq gene 950238 953204 . + . ID=gene-LLC55_RS04500;Name=LLC55_RS04500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04500;old_locus_tag=LLC55_04500 NZ_CP086200.1 Protein Homology CDS 950238 953204 . + 0 ID=cds-WP_011407696.1;Parent=gene-LLC55_RS04500;Dbxref=Genbank:WP_011407696.1;Name=WP_011407696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990845.1;locus_tag=LLC55_RS04500;product=TonB-dependent receptor;protein_id=WP_011407696.1;transl_table=11 NZ_CP086200.1 RefSeq gene 953302 953378 . - . ID=gene-LLC55_RS04505;Name=LLC55_RS04505;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS04505;old_locus_tag=LLC55_04505 NZ_CP086200.1 cmsearch ncRNA 953302 953378 . - . ID=rna-LLC55_RS04505;Parent=gene-LLC55_RS04505;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04505;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 953302 953378 . - . ID=exon-LLC55_RS04505-1;Parent=rna-LLC55_RS04505;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04505;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 953819 954967 . - . ID=gene-LLC55_RS04510;Name=LLC55_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04510;old_locus_tag=LLC55_04510 NZ_CP086200.1 Protein Homology CDS 953819 954967 . - 0 ID=cds-WP_011257817.1;Parent=gene-LLC55_RS04510;Dbxref=Genbank:WP_011257817.1;Name=WP_011257817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504498.1;locus_tag=LLC55_RS04510;product=HDOD domain-containing protein;protein_id=WP_011257817.1;transl_table=11 NZ_CP086200.1 RefSeq gene 955081 955617 . - . ID=gene-LLC55_RS04515;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=LLC55_RS04515;old_locus_tag=LLC55_04515 NZ_CP086200.1 Protein Homology CDS 955081 955617 . - 0 ID=cds-WP_011257818.1;Parent=gene-LLC55_RS04515;Dbxref=Genbank:WP_011257818.1;Name=WP_011257818.1;Ontology_term=GO:0006796,GO:0004427;gbkey=CDS;gene=ppa;go_function=inorganic diphosphate phosphatase activity|0004427||IEA;go_process=phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483319.1;locus_tag=LLC55_RS04515;product=inorganic diphosphatase;protein_id=WP_011257818.1;transl_table=11 NZ_CP086200.1 RefSeq gene 955814 956296 . + . ID=gene-LLC55_RS04520;Name=LLC55_RS04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04520;old_locus_tag=LLC55_04520 NZ_CP086200.1 Protein Homology CDS 955814 956296 . + 0 ID=cds-WP_011407697.1;Parent=gene-LLC55_RS04520;Dbxref=Genbank:WP_011407697.1;Name=WP_011407697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158947.1;locus_tag=LLC55_RS04520;product=hypothetical protein;protein_id=WP_011407697.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 956589 958530 . - . ID=gene-LLC55_RS04525;Name=LLC55_RS04525;end_range=958530,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04525;old_locus_tag=LLC55_04525;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 956589 958530 . - 0 ID=cds-LLC55_RS04525;Parent=gene-LLC55_RS04525;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=958530,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038412.1;locus_tag=LLC55_RS04525;partial=true;product=sodium-translocating pyrophosphatase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 958596 959561 . + . ID=gene-LLC55_RS04530;Name=LLC55_RS04530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04530;old_locus_tag=LLC55_04530 NZ_CP086200.1 Protein Homology CDS 958596 959561 . + 0 ID=cds-WP_109182067.1-2;Parent=gene-LLC55_RS04530;Dbxref=Genbank:WP_109182067.1;Name=WP_109182067.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS04530;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182067.1;transl_table=11 NZ_CP086200.1 RefSeq gene 959558 959734 . - . ID=gene-LLC55_RS04535;Name=LLC55_RS04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04535;old_locus_tag=LLC55_04535 NZ_CP086200.1 Protein Homology CDS 959558 959734 . - 0 ID=cds-WP_187359573.1;Parent=gene-LLC55_RS04535;Dbxref=Genbank:WP_187359573.1;Name=WP_187359573.1;Ontology_term=GO:1902600,GO:0004427,GO:0009678,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=inorganic diphosphate phosphatase activity|0004427||IEA,pyrophosphate hydrolysis-driven proton transmembrane transporter activity|0009678||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: protein motif:HMM:NF015019.2;locus_tag=LLC55_RS04535;product=sodium/proton-translocating pyrophosphatase;protein_id=WP_187359573.1;transl_table=11 NZ_CP086200.1 RefSeq gene 959983 960507 . + . ID=gene-LLC55_RS04540;Name=LLC55_RS04540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04540;old_locus_tag=LLC55_04540 NZ_CP086200.1 Protein Homology CDS 959983 960507 . + 0 ID=cds-WP_011257823.1;Parent=gene-LLC55_RS04540;Dbxref=Genbank:WP_011257823.1;Name=WP_011257823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348509.1;locus_tag=LLC55_RS04540;product=hypothetical protein;protein_id=WP_011257823.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 960651 961616 . - . ID=gene-LLC55_RS04545;Name=LLC55_RS04545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04545;old_locus_tag=LLC55_04545;pseudo=true NZ_CP086200.1 Protein Homology CDS 960651 961616 . - 0 ID=cds-LLC55_RS04545;Parent=gene-LLC55_RS04545;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS04545;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 961705 961896 . - . ID=gene-LLC55_RS04550;Name=LLC55_RS04550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04550;old_locus_tag=LLC55_04550;partial=true;pseudo=true;start_range=.,961705 NZ_CP086200.1 Protein Homology CDS 961705 961896 . - 0 ID=cds-LLC55_RS04550;Parent=gene-LLC55_RS04550;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS04550;partial=true;product=transposase;pseudo=true;start_range=.,961705;transl_table=11 NZ_CP086200.1 RefSeq gene 962187 963443 . - . ID=gene-LLC55_RS04555;Name=LLC55_RS04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04555;old_locus_tag=LLC55_04555 NZ_CP086200.1 Protein Homology CDS 962187 963443 . - 0 ID=cds-WP_011257827.1;Parent=gene-LLC55_RS04555;Dbxref=Genbank:WP_011257827.1;Name=WP_011257827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504490.1;locus_tag=LLC55_RS04555;product=6-phosphofructokinase;protein_id=WP_011257827.1;transl_table=11 NZ_CP086200.1 RefSeq gene 963603 964166 . + . ID=gene-LLC55_RS04560;Name=LLC55_RS04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04560;old_locus_tag=LLC55_04560 NZ_CP086200.1 Protein Homology CDS 963603 964166 . + 0 ID=cds-WP_011257828.1;Parent=gene-LLC55_RS04560;Dbxref=Genbank:WP_011257828.1;Name=WP_011257828.1;Ontology_term=GO:0006139,GO:0005524,GO:0019205;gbkey=CDS;go_function=ATP binding|0005524||IEA,nucleobase-containing compound kinase activity|0019205||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364422.1;locus_tag=LLC55_RS04560;product=adenylate kinase;protein_id=WP_011257828.1;transl_table=11 NZ_CP086200.1 RefSeq gene 964524 965891 . + . ID=gene-LLC55_RS04565;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=LLC55_RS04565;old_locus_tag=LLC55_04565 NZ_CP086200.1 Protein Homology CDS 964524 965891 . + 0 ID=cds-WP_171970794.1;Parent=gene-LLC55_RS04565;Dbxref=Genbank:WP_171970794.1;Name=WP_171970794.1;Ontology_term=GO:0009252,GO:0016881;gbkey=CDS;gene=mpl;go_function=acid-amino acid ligase activity|0016881||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164849.1;locus_tag=LLC55_RS04565;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_171970794.1;transl_table=11 NZ_CP086200.1 RefSeq gene 965891 966487 . + . ID=gene-LLC55_RS04570;Name=LLC55_RS04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04570;old_locus_tag=LLC55_04570 NZ_CP086200.1 Protein Homology CDS 965891 966487 . + 0 ID=cds-WP_027703752.1;Parent=gene-LLC55_RS04570;Dbxref=Genbank:WP_027703752.1;Name=WP_027703752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305271.1;locus_tag=LLC55_RS04570;product=LON peptidase substrate-binding domain-containing protein;protein_id=WP_027703752.1;transl_table=11 NZ_CP086200.1 RefSeq gene 966634 967518 . + . ID=gene-LLC55_RS04575;Name=LLC55_RS04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04575;old_locus_tag=LLC55_04575 NZ_CP086200.1 Protein Homology CDS 966634 967518 . + 0 ID=cds-WP_011257831.1;Parent=gene-LLC55_RS04575;Dbxref=Genbank:WP_011257831.1;Name=WP_011257831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364428.1;locus_tag=LLC55_RS04575;product=bestrophin family ion channel;protein_id=WP_011257831.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 967825 968480 . - . ID=gene-LLC55_RS04580;Name=LLC55_RS04580;end_range=968480,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04580;old_locus_tag=LLC55_04580;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 967825 968480 . - 0 ID=cds-LLC55_RS04580;Parent=gene-LLC55_RS04580;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=968480,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS04580;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 968490 969288 . - . ID=gene-LLC55_RS04585;Name=LLC55_RS04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04585;old_locus_tag=LLC55_04585 NZ_CP086200.1 Protein Homology CDS 969017 969288 . - 0 ID=cds-WP_155296460.1;Parent=gene-LLC55_RS04585;Dbxref=Genbank:WP_155296460.1;Name=WP_155296460.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS04585;product=IS5 family transposase;protein_id=WP_155296460.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 968490 969018 . - 1 ID=cds-WP_155296460.1;Parent=gene-LLC55_RS04585;Dbxref=Genbank:WP_155296460.1;Name=WP_155296460.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS04585;product=IS5 family transposase;protein_id=WP_155296460.1;transl_table=11 NZ_CP086200.1 RefSeq gene 969530 970144 . + . ID=gene-LLC55_RS04590;Name=LLC55_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04590;old_locus_tag=LLC55_04590 NZ_CP086200.1 Protein Homology CDS 969530 970144 . + 0 ID=cds-WP_011257834.1;Parent=gene-LLC55_RS04590;Dbxref=Genbank:WP_011257834.1;Name=WP_011257834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486641.1;locus_tag=LLC55_RS04590;product=glutathione binding-like protein;protein_id=WP_011257834.1;transl_table=11 NZ_CP086200.1 RefSeq gene 970227 971213 . - . ID=gene-LLC55_RS04595;Name=LLC55_RS04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04595;old_locus_tag=LLC55_04595 NZ_CP086200.1 Protein Homology CDS 970227 971213 . - 0 ID=cds-WP_011257835.1;Parent=gene-LLC55_RS04595;Dbxref=Genbank:WP_011257835.1;Name=WP_011257835.1;Ontology_term=GO:0006108,GO:0016615;gbkey=CDS;go_function=malate dehydrogenase activity|0016615||IEA;go_process=malate metabolic process|0006108||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439107.1;locus_tag=LLC55_RS04595;product=malate dehydrogenase;protein_id=WP_011257835.1;transl_table=11 NZ_CP086200.1 RefSeq gene 971329 971823 . - . ID=gene-LLC55_RS04600;Name=LLC55_RS04600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04600;old_locus_tag=LLC55_04600 NZ_CP086200.1 Protein Homology CDS 971329 971823 . - 0 ID=cds-WP_011257836.1;Parent=gene-LLC55_RS04600;Dbxref=Genbank:WP_011257836.1;Name=WP_011257836.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993409.1;locus_tag=LLC55_RS04600;product=peptidylprolyl isomerase;protein_id=WP_011257836.1;transl_table=11 NZ_CP086200.1 RefSeq gene 972068 973897 . + . ID=gene-LLC55_RS04605;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=LLC55_RS04605;old_locus_tag=LLC55_04605 NZ_CP086200.1 Protein Homology CDS 972068 973897 . + 0 ID=cds-WP_011257837.1;Parent=gene-LLC55_RS04605;Dbxref=Genbank:WP_011257837.1;Name=WP_011257837.1;Ontology_term=GO:0006412,GO:0006950,GO:0005525;gbkey=CDS;gene=typA;go_function=GTP binding|0005525||IEA;go_process=translation|0006412||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904579.1;locus_tag=LLC55_RS04605;product=translational GTPase TypA;protein_id=WP_011257837.1;transl_table=11 NZ_CP086200.1 RefSeq gene 973967 974386 . + . ID=gene-LLC55_RS04610;Name=LLC55_RS04610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04610;old_locus_tag=LLC55_04610 NZ_CP086200.1 Protein Homology CDS 973967 974386 . + 0 ID=cds-WP_011257838.1;Parent=gene-LLC55_RS04610;Dbxref=Genbank:WP_011257838.1;Name=WP_011257838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161510.1;locus_tag=LLC55_RS04610;product=DUF2127 domain-containing protein;protein_id=WP_011257838.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 974490 975158 . + . ID=gene-LLC55_RS04615;Name=LLC55_RS04615;end_range=975158,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04615;old_locus_tag=LLC55_04615;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 974490 975158 . + 0 ID=cds-LLC55_RS04615;Parent=gene-LLC55_RS04615;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=975158,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156226.1;locus_tag=LLC55_RS04615;partial=true;product=amidase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 975309 976436 . - . ID=gene-LLC55_RS04620;Name=LLC55_RS04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04620;old_locus_tag=LLC55_04620 NZ_CP086200.1 Protein Homology CDS 975309 976436 . - 0 ID=cds-WP_011257840.1;Parent=gene-LLC55_RS04620;Dbxref=Genbank:WP_011257840.1;Name=WP_011257840.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156225.1;locus_tag=LLC55_RS04620;product=mechanosensitive ion channel;protein_id=WP_011257840.1;transl_table=11 NZ_CP086200.1 RefSeq gene 976537 977919 . - . ID=gene-LLC55_RS04625;Name=LLC55_RS04625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04625;old_locus_tag=LLC55_04625 NZ_CP086200.1 Protein Homology CDS 976537 977919 . - 0 ID=cds-WP_011257841.1;Parent=gene-LLC55_RS04625;Dbxref=Genbank:WP_011257841.1;Name=WP_011257841.1;Ontology_term=GO:0009423,GO:0003849;gbkey=CDS;go_function=3-deoxy-7-phosphoheptulonate synthase activity|0003849||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257841.1;locus_tag=LLC55_RS04625;product=3-deoxy-7-phosphoheptulonate synthase class II;protein_id=WP_011257841.1;transl_table=11 NZ_CP086200.1 RefSeq gene 978167 980290 . + . ID=gene-LLC55_RS04630;Name=LLC55_RS04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04630;old_locus_tag=LLC55_04630 NZ_CP086200.1 Protein Homology CDS 978167 980290 . + 0 ID=cds-WP_011257842.1;Parent=gene-LLC55_RS04630;Dbxref=Genbank:WP_011257842.1;Name=WP_011257842.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089489.1;locus_tag=LLC55_RS04630;product=TonB-dependent receptor;protein_id=WP_011257842.1;transl_table=11 NZ_CP086200.1 RefSeq gene 980819 981337 . - . ID=gene-LLC55_RS04635;Name=LLC55_RS04635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04635;old_locus_tag=LLC55_04635 NZ_CP086200.1 Protein Homology CDS 980819 981337 . - 0 ID=cds-WP_011407706.1;Parent=gene-LLC55_RS04635;Dbxref=Genbank:WP_011407706.1;Name=WP_011407706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993394.1;locus_tag=LLC55_RS04635;product=disulfide bond formation protein B;protein_id=WP_011407706.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 981591 981974 . + . ID=gene-LLC55_RS04640;Name=LLC55_RS04640;end_range=981974,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04640;old_locus_tag=LLC55_04640;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 981591 981974 . + 0 ID=cds-LLC55_RS04640;Parent=gene-LLC55_RS04640;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=981974,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347842.1;locus_tag=LLC55_RS04640;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 982104 983146 . + . ID=gene-LLC55_RS04645;Name=LLC55_RS04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04645;old_locus_tag=LLC55_04645 NZ_CP086200.1 Protein Homology CDS 982104 982299 . + 0 ID=cds-WP_229001938.1;Parent=gene-LLC55_RS04645;Dbxref=Genbank:WP_229001938.1;Name=WP_229001938.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS04645;product=IS3 family transposase;protein_id=WP_229001938.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 982299 983146 . + 2 ID=cds-WP_229001938.1;Parent=gene-LLC55_RS04645;Dbxref=Genbank:WP_229001938.1;Name=WP_229001938.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS04645;product=IS3 family transposase;protein_id=WP_229001938.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 983180 983596 . + . ID=gene-LLC55_RS04650;Name=LLC55_RS04650;end_range=983596,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04650;old_locus_tag=LLC55_04650;partial=true;pseudo=true;start_range=.,983180 NZ_CP086200.1 Protein Homology CDS 983180 983596 . + 0 ID=cds-LLC55_RS04650;Parent=gene-LLC55_RS04650;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=983596,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS04650;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,983180;transl_table=11 NZ_CP086200.1 RefSeq gene 983660 984895 . + . ID=gene-LLC55_RS04655;Name=LLC55_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04655;old_locus_tag=LLC55_04655 NZ_CP086200.1 Protein Homology CDS 983660 984895 . + 0 ID=cds-WP_011407713.1;Parent=gene-LLC55_RS04655;Dbxref=Genbank:WP_011407713.1;Name=WP_011407713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS04655;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011407713.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 984910 985482 . + . ID=gene-LLC55_RS04660;Name=LLC55_RS04660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04660;old_locus_tag=LLC55_04660;partial=true;pseudo=true;start_range=.,984910 NZ_CP086200.1 Protein Homology CDS 984910 985482 . + 0 ID=cds-LLC55_RS04660;Parent=gene-LLC55_RS04660;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347842.1;locus_tag=LLC55_RS04660;partial=true;product=transposase;pseudo=true;start_range=.,984910;transl_table=11 NZ_CP086200.1 RefSeq gene 985509 986399 . - . ID=gene-LLC55_RS04665;Name=LLC55_RS04665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04665;old_locus_tag=LLC55_04665 NZ_CP086200.1 Protein Homology CDS 985509 986399 . - 0 ID=cds-WP_011407710.1;Parent=gene-LLC55_RS04665;Dbxref=Genbank:WP_011407710.1;Name=WP_011407710.1;Ontology_term=GO:0006508,GO:0004252;gbkey=CDS;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901112.1;locus_tag=LLC55_RS04665;product=trypsin-like serine protease;protein_id=WP_011407710.1;transl_table=11 NZ_CP086200.1 RefSeq gene 986676 988052 . + . ID=gene-LLC55_RS04670;Name=LLC55_RS04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04670;old_locus_tag=LLC55_04670 NZ_CP086200.1 Protein Homology CDS 986676 988052 . + 0 ID=cds-WP_069964507.1;Parent=gene-LLC55_RS04670;Dbxref=Genbank:WP_069964507.1;Name=WP_069964507.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS04670;product=IS5-like element ISXo4 family transposase;protein_id=WP_069964507.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 988093 988209 . - . ID=gene-LLC55_RS04675;Name=LLC55_RS04675;end_range=988209,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04675;old_locus_tag=LLC55_04675;partial=true;pseudo=true;start_range=.,988093 NZ_CP086200.1 Protein Homology CDS 988093 988209 . - 0 ID=cds-LLC55_RS04675;Parent=gene-LLC55_RS04675;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=988209,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011711660.1;locus_tag=LLC55_RS04675;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,988093;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 988403 988954 . - . ID=gene-LLC55_RS04680;Name=LLC55_RS04680;end_range=988954,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04680;old_locus_tag=LLC55_04680;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 988403 988954 . - 0 ID=cds-LLC55_RS04680;Parent=gene-LLC55_RS04680;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=988954,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612183.1;locus_tag=LLC55_RS04680;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 988976 989281 . - . ID=gene-LLC55_RS04685;Name=LLC55_RS04685;end_range=989281,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04685;old_locus_tag=LLC55_04685;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 988976 989281 . - 0 ID=cds-LLC55_RS04685;Parent=gene-LLC55_RS04685;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=989281,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS04685;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 989351 990316 . - . ID=gene-LLC55_RS04690;Name=LLC55_RS04690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04690;old_locus_tag=LLC55_04690;pseudo=true NZ_CP086200.1 Protein Homology CDS 989351 990316 . - 0 ID=cds-LLC55_RS04690;Parent=gene-LLC55_RS04690;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS04690;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 990440 991414 . + . ID=gene-LLC55_RS04695;Name=LLC55_RS04695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04695;old_locus_tag=LLC55_04695;pseudo=true NZ_CP086200.1 Protein Homology CDS 990440 991414 . + 0 ID=cds-LLC55_RS04695;Parent=gene-LLC55_RS04695;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557986.1;locus_tag=LLC55_RS04695;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 991423 991701 . - . ID=gene-LLC55_RS23355;Name=LLC55_RS23355;end_range=991701,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23355;partial=true;pseudo=true;start_range=.,991423 NZ_CP086200.1 Protein Homology CDS 991423 991701 . - 0 ID=cds-LLC55_RS23355;Parent=gene-LLC55_RS23355;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=991701,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS23355;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,991423;transl_table=11 NZ_CP086200.1 RefSeq gene 991708 992943 . - . ID=gene-LLC55_RS04700;Name=LLC55_RS04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04700;old_locus_tag=LLC55_04700 NZ_CP086200.1 Protein Homology CDS 991708 992943 . - 0 ID=cds-WP_011407713.1-2;Parent=gene-LLC55_RS04700;Dbxref=Genbank:WP_011407713.1;Name=WP_011407713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS04700;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011407713.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 993007 993816 . - . ID=gene-LLC55_RS04705;Name=LLC55_RS04705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04705;old_locus_tag=LLC55_04705;partial=true;pseudo=true;start_range=.,993007 NZ_CP086200.1 Protein Homology CDS 993007 993816 . - 0 ID=cds-LLC55_RS04705;Parent=gene-LLC55_RS04705;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS04705;partial=true;product=IS5 family transposase;pseudo=true;start_range=.,993007;transl_table=11 NZ_CP086200.1 RefSeq gene 993926 995245 . - . ID=gene-LLC55_RS04710;Name=LLC55_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04710;old_locus_tag=LLC55_04710 NZ_CP086200.1 Protein Homology CDS 993926 995245 . - 0 ID=cds-WP_109182089.1;Parent=gene-LLC55_RS04710;Dbxref=Genbank:WP_109182089.1;Name=WP_109182089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS04710;product=IS701-like element ISXo15 family transposase;protein_id=WP_109182089.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 995389 995966 . - . ID=gene-LLC55_RS04715;Name=LLC55_RS04715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04715;old_locus_tag=LLC55_04715;partial=true;pseudo=true;start_range=.,995389 NZ_CP086200.1 Protein Homology CDS 995389 995966 . - 0 ID=cds-LLC55_RS04715;Parent=gene-LLC55_RS04715;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612183.1;locus_tag=LLC55_RS04715;partial=true;product=transposase;pseudo=true;start_range=.,995389;transl_table=11 NZ_CP086200.1 RefSeq gene 995991 996914 . + . ID=gene-LLC55_RS04720;Name=LLC55_RS04720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04720;old_locus_tag=LLC55_04720 NZ_CP086200.1 Protein Homology CDS 995991 996914 . + 0 ID=cds-WP_041182948.1;Parent=gene-LLC55_RS04720;Dbxref=Genbank:WP_041182948.1;Name=WP_041182948.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505222.1;locus_tag=LLC55_RS04720;product=IS30 family transposase;protein_id=WP_041182948.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 996931 997858 . - . ID=gene-LLC55_RS04725;Name=LLC55_RS04725;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04725;old_locus_tag=LLC55_04725;pseudo=true NZ_CP086200.1 Protein Homology CDS 996931 997858 . - 0 ID=cds-LLC55_RS04725;Parent=gene-LLC55_RS04725;Note=frameshifted%3B internal stop;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163169.1;locus_tag=LLC55_RS04725;product=pseudouridine synthase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 997977 998942 . + . ID=gene-LLC55_RS04730;Name=LLC55_RS04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04730;old_locus_tag=LLC55_04730 NZ_CP086200.1 Protein Homology CDS 997977 998942 . + 0 ID=cds-WP_109182121.1;Parent=gene-LLC55_RS04730;Dbxref=Genbank:WP_109182121.1;Name=WP_109182121.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS04730;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182121.1;transl_table=11 NZ_CP086200.1 RefSeq gene 999271 1000821 . + . ID=gene-LLC55_RS04735;Name=LLC55_RS04735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04735;old_locus_tag=LLC55_04735 NZ_CP086200.1 Protein Homology CDS 999271 1000821 . + 0 ID=cds-WP_012445996.1;Parent=gene-LLC55_RS04735;Dbxref=Genbank:WP_012445996.1;Name=WP_012445996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445996.1;locus_tag=LLC55_RS04735;product=hypothetical protein;protein_id=WP_012445996.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1000889 1001652 . - . ID=gene-LLC55_RS04740;Name=LLC55_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04740;old_locus_tag=LLC55_04740 NZ_CP086200.1 Protein Homology CDS 1001337 1001652 . - 0 ID=cds-WP_094187735.1;Parent=gene-LLC55_RS04740;Dbxref=Genbank:WP_094187735.1;Name=WP_094187735.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS04740;product=IS5 family transposase;protein_id=WP_094187735.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1000889 1001337 . - 2 ID=cds-WP_094187735.1;Parent=gene-LLC55_RS04740;Dbxref=Genbank:WP_094187735.1;Name=WP_094187735.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS04740;product=IS5 family transposase;protein_id=WP_094187735.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1001719 1002933 . + . ID=gene-LLC55_RS04745;Name=LLC55_RS04745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04745;old_locus_tag=LLC55_04745;pseudo=true NZ_CP086200.1 Protein Homology CDS 1001719 1002933 . + 0 ID=cds-LLC55_RS04745;Parent=gene-LLC55_RS04745;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS04745;product=IS4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1003022 1004206 . + . ID=gene-LLC55_RS04750;Name=LLC55_RS04750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04750;old_locus_tag=LLC55_04750 NZ_CP086200.1 Protein Homology CDS 1003022 1004206 . + 0 ID=cds-WP_069959738.1;Parent=gene-LLC55_RS04750;Dbxref=Genbank:WP_069959738.1;Name=WP_069959738.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409568.1;locus_tag=LLC55_RS04750;product=IS701 family transposase;protein_id=WP_069959738.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1004321 1005289 . - . ID=gene-LLC55_RS04755;Name=LLC55_RS04755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04755;old_locus_tag=LLC55_04755 NZ_CP086200.1 Protein Homology CDS 1004321 1005289 . - 0 ID=cds-WP_011258802.1-3;Parent=gene-LLC55_RS04755;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS04755;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1005550 1006011 . - . ID=gene-LLC55_RS04760;Name=LLC55_RS04760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04760;old_locus_tag=LLC55_04760 NZ_CP086200.1 Protein Homology CDS 1005550 1006011 . - 0 ID=cds-WP_011407721.1;Parent=gene-LLC55_RS04760;Dbxref=Genbank:WP_011407721.1;Name=WP_011407721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003470606.1;locus_tag=LLC55_RS04760;product=cell wall hydrolase;protein_id=WP_011407721.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1006560 1006724 . - . ID=gene-LLC55_RS04765;Name=LLC55_RS04765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04765;old_locus_tag=LLC55_04765 NZ_CP086200.1 Protein Homology CDS 1006560 1006724 . - 0 ID=cds-WP_229001937.1;Parent=gene-LLC55_RS04765;Dbxref=Genbank:WP_229001937.1;Name=WP_229001937.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027704.2;locus_tag=LLC55_RS04765;product=DUF4996 domain-containing protein;protein_id=WP_229001937.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1006796 1007559 . - . ID=gene-LLC55_RS04770;Name=LLC55_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04770;old_locus_tag=LLC55_04770 NZ_CP086200.1 Protein Homology CDS 1007244 1007559 . - 0 ID=cds-WP_109182012.1-4;Parent=gene-LLC55_RS04770;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS04770;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1006796 1007244 . - 2 ID=cds-WP_109182012.1-4;Parent=gene-LLC55_RS04770;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS04770;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1007592 1008323 . - . ID=gene-LLC55_RS04775;Name=LLC55_RS04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04775;old_locus_tag=LLC55_04775 NZ_CP086200.1 Protein Homology CDS 1007592 1008323 . - 0 ID=cds-WP_049756327.1;Parent=gene-LLC55_RS04775;Dbxref=Genbank:WP_049756327.1;Name=WP_049756327.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445973.1;locus_tag=LLC55_RS04775;product=glycerophosphodiester phosphodiesterase family protein;protein_id=WP_049756327.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1008317 1008904 . - . ID=gene-LLC55_RS04780;Name=LLC55_RS04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04780;old_locus_tag=LLC55_04780 NZ_CP086200.1 GeneMarkS-2+ CDS 1008317 1008904 . - 0 ID=cds-WP_011407723.1;Parent=gene-LLC55_RS04780;Dbxref=Genbank:WP_011407723.1;Name=WP_011407723.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS04780;product=TonB-dependent receptor;protein_id=WP_011407723.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1009355 1010101 . + . ID=gene-LLC55_RS04785;Name=LLC55_RS04785;end_range=1010101,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04785;old_locus_tag=LLC55_04785;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1009355 1010101 . + 0 ID=cds-LLC55_RS04785;Parent=gene-LLC55_RS04785;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1010101,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS04785;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1010143 1010896 . + . ID=gene-LLC55_RS04790;Name=LLC55_RS04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04790;old_locus_tag=LLC55_04790 NZ_CP086200.1 Protein Homology CDS 1010143 1010414 . + 0 ID=cds-WP_109182091.1;Parent=gene-LLC55_RS04790;Dbxref=Genbank:WP_109182091.1;Name=WP_109182091.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS04790;product=IS5 family transposase;protein_id=WP_109182091.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1010413 1010896 . + 1 ID=cds-WP_109182091.1;Parent=gene-LLC55_RS04790;Dbxref=Genbank:WP_109182091.1;Name=WP_109182091.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS04790;product=IS5 family transposase;protein_id=WP_109182091.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1010897 1011862 . - . ID=gene-LLC55_RS04795;Name=LLC55_RS04795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04795;old_locus_tag=LLC55_04795 NZ_CP086200.1 Protein Homology CDS 1010897 1011862 . - 0 ID=cds-WP_109181948.1;Parent=gene-LLC55_RS04795;Dbxref=Genbank:WP_109181948.1;Name=WP_109181948.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS04795;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181948.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1012126 1013133 . + . ID=gene-LLC55_RS04800;Name=LLC55_RS04800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04800;old_locus_tag=LLC55_04800 NZ_CP086200.1 Protein Homology CDS 1012126 1013133 . + 0 ID=cds-WP_011257874.1;Parent=gene-LLC55_RS04800;Dbxref=Genbank:WP_011257874.1;Name=WP_011257874.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852046.1;locus_tag=LLC55_RS04800;product=isocitrate dehydrogenase;protein_id=WP_011257874.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1013277 1014038 . - . ID=gene-LLC55_RS04805;Name=LLC55_RS04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04805;old_locus_tag=LLC55_04805 NZ_CP086200.1 Protein Homology CDS 1013277 1014038 . - 0 ID=cds-WP_011257875.1;Parent=gene-LLC55_RS04805;Dbxref=Genbank:WP_011257875.1;Name=WP_011257875.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927840.1;locus_tag=LLC55_RS04805;product=Bax inhibitor-1/YccA family protein;protein_id=WP_011257875.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1014190 1014266 . + . ID=gene-LLC55_RS04810;Name=LLC55_RS04810;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04810;old_locus_tag=LLC55_04810 NZ_CP086200.1 tRNAscan-SE tRNA 1014190 1014266 . + . ID=rna-LLC55_RS04810;Parent=gene-LLC55_RS04810;anticodon=(pos:1014224..1014226);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04810;product=tRNA-Pro NZ_CP086200.1 tRNAscan-SE exon 1014190 1014266 . + . ID=exon-LLC55_RS04810-1;Parent=rna-LLC55_RS04810;anticodon=(pos:1014224..1014226);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04810;product=tRNA-Pro NZ_CP086200.1 RefSeq gene 1014309 1014385 . + . ID=gene-LLC55_RS04815;Name=LLC55_RS04815;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04815;old_locus_tag=LLC55_04815 NZ_CP086200.1 tRNAscan-SE tRNA 1014309 1014385 . + . ID=rna-LLC55_RS04815;Parent=gene-LLC55_RS04815;anticodon=(pos:1014343..1014345);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04815;product=tRNA-Arg NZ_CP086200.1 tRNAscan-SE exon 1014309 1014385 . + . ID=exon-LLC55_RS04815-1;Parent=rna-LLC55_RS04815;anticodon=(pos:1014343..1014345);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04815;product=tRNA-Arg NZ_CP086200.1 RefSeq gene 1014418 1014494 . + . ID=gene-LLC55_RS04820;Name=LLC55_RS04820;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04820;old_locus_tag=LLC55_04820 NZ_CP086200.1 tRNAscan-SE tRNA 1014418 1014494 . + . ID=rna-LLC55_RS04820;Parent=gene-LLC55_RS04820;anticodon=(pos:1014452..1014454);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04820;product=tRNA-His NZ_CP086200.1 tRNAscan-SE exon 1014418 1014494 . + . ID=exon-LLC55_RS04820-1;Parent=rna-LLC55_RS04820;anticodon=(pos:1014452..1014454);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04820;product=tRNA-His NZ_CP086200.1 RefSeq gene 1014588 1014663 . + . ID=gene-LLC55_RS04825;Name=LLC55_RS04825;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04825;old_locus_tag=LLC55_04825 NZ_CP086200.1 tRNAscan-SE tRNA 1014588 1014663 . + . ID=rna-LLC55_RS04825;Parent=gene-LLC55_RS04825;anticodon=(pos:1014621..1014623);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04825;product=tRNA-Lys NZ_CP086200.1 tRNAscan-SE exon 1014588 1014663 . + . ID=exon-LLC55_RS04825-1;Parent=rna-LLC55_RS04825;anticodon=(pos:1014621..1014623);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04825;product=tRNA-Lys NZ_CP086200.1 RefSeq pseudogene 1014970 1016013 . + . ID=gene-LLC55_RS04830;Name=LLC55_RS04830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04830;old_locus_tag=LLC55_04830;pseudo=true NZ_CP086200.1 Protein Homology CDS 1014970 1016013 . + 0 ID=cds-LLC55_RS04830;Parent=gene-LLC55_RS04830;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558183.1;locus_tag=LLC55_RS04830;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1016041 1016366 . + . ID=gene-LLC55_RS04835;Name=LLC55_RS04835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04835;old_locus_tag=LLC55_04835;partial=true;pseudo=true;start_range=.,1016041 NZ_CP086200.1 Protein Homology CDS 1016041 1016366 . + 0 ID=cds-LLC55_RS04835;Parent=gene-LLC55_RS04835;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011239931.1;locus_tag=LLC55_RS04835;partial=true;product=ATP-binding protein;pseudo=true;start_range=.,1016041;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1016464 1016745 . + . ID=gene-LLC55_RS04840;Name=LLC55_RS04840;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04840;old_locus_tag=LLC55_04840;partial=true;pseudo=true;start_range=.,1016464 NZ_CP086200.1 Protein Homology CDS 1016464 1016745 . + 0 ID=cds-LLC55_RS04840;Parent=gene-LLC55_RS04840;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS04840;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,1016464;transl_table=11 NZ_CP086200.1 RefSeq gene 1016888 1018264 . + . ID=gene-LLC55_RS04845;Name=LLC55_RS04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04845;old_locus_tag=LLC55_04845 NZ_CP086200.1 Protein Homology CDS 1016888 1018264 . + 0 ID=cds-WP_069964507.1-2;Parent=gene-LLC55_RS04845;Dbxref=Genbank:WP_069964507.1;Name=WP_069964507.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS04845;product=IS5-like element ISXo4 family transposase;protein_id=WP_069964507.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1018588 1018672 . + . ID=gene-LLC55_RS04850;Name=LLC55_RS04850;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04850;old_locus_tag=LLC55_04850 NZ_CP086200.1 tRNAscan-SE tRNA 1018588 1018672 . + . ID=rna-LLC55_RS04850;Parent=gene-LLC55_RS04850;anticodon=(pos:1018622..1018624);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04850;product=tRNA-Leu NZ_CP086200.1 tRNAscan-SE exon 1018588 1018672 . + . ID=exon-LLC55_RS04850-1;Parent=rna-LLC55_RS04850;anticodon=(pos:1018622..1018624);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04850;product=tRNA-Leu NZ_CP086200.1 RefSeq gene 1018875 1020167 . + . ID=gene-LLC55_RS04855;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=LLC55_RS04855;old_locus_tag=LLC55_04855 NZ_CP086200.1 Protein Homology CDS 1018875 1020167 . + 0 ID=cds-WP_012445939.1;Parent=gene-LLC55_RS04855;Dbxref=Genbank:WP_012445939.1;Name=WP_012445939.1;Ontology_term=GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process='de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378367.1;locus_tag=LLC55_RS04855;product=trigger factor;protein_id=WP_012445939.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1020260 1020886 . + . ID=gene-LLC55_RS04860;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=LLC55_RS04860;old_locus_tag=LLC55_04860 NZ_CP086200.1 Protein Homology CDS 1020260 1020886 . + 0 ID=cds-WP_002806026.1;Parent=gene-LLC55_RS04860;Dbxref=Genbank:WP_002806026.1;Name=WP_002806026.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0009368;gbkey=CDS;gene=clpP;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806026.1;locus_tag=LLC55_RS04860;product=ATP-dependent Clp endopeptidase proteolytic subunit ClpP;protein_id=WP_002806026.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1021011 1022297 . + . ID=gene-LLC55_RS04865;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=LLC55_RS04865;old_locus_tag=LLC55_04865 NZ_CP086200.1 Protein Homology CDS 1021011 1022297 . + 0 ID=cds-WP_011257881.1;Parent=gene-LLC55_RS04865;Dbxref=Genbank:WP_011257881.1;Name=WP_011257881.1;Ontology_term=GO:0005524,GO:0008270,GO:0016887,GO:0046983;gbkey=CDS;gene=clpX;go_function=ATP binding|0005524||IEA,zinc ion binding|0008270||IEA,ATP hydrolysis activity|0016887||IEA,protein dimerization activity|0046983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451747.1;locus_tag=LLC55_RS04865;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_011257881.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1022441 1024912 . + . ID=gene-LLC55_RS04870;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=LLC55_RS04870;old_locus_tag=LLC55_04870 NZ_CP086200.1 Protein Homology CDS 1022441 1024912 . + 0 ID=cds-WP_012445937.1;Parent=gene-LLC55_RS04870;Dbxref=Genbank:WP_012445937.1;Name=WP_012445937.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0016887,GO:0043565;gbkey=CDS;gene=lon;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA,ATP hydrolysis activity|0016887||IEA,sequence-specific DNA binding|0043565||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451748.1;locus_tag=LLC55_RS04870;product=endopeptidase La;protein_id=WP_012445937.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1025126 1025398 . + . ID=gene-LLC55_RS04875;Name=LLC55_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04875;old_locus_tag=LLC55_04875 NZ_CP086200.1 Protein Homology CDS 1025126 1025398 . + 0 ID=cds-WP_002806049.1;Parent=gene-LLC55_RS04875;Dbxref=Genbank:WP_002806049.1;Name=WP_002806049.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904732.1;locus_tag=LLC55_RS04875;product=HU family DNA-binding protein;protein_id=WP_002806049.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1025410 1025484 . + . ID=gene-LLC55_RS04880;Name=LLC55_RS04880;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04880;old_locus_tag=LLC55_04880 NZ_CP086200.1 tRNAscan-SE tRNA 1025410 1025484 . + . ID=rna-LLC55_RS04880;Parent=gene-LLC55_RS04880;anticodon=(pos:1025442..1025444);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04880;product=tRNA-Val NZ_CP086200.1 tRNAscan-SE exon 1025410 1025484 . + . ID=exon-LLC55_RS04880-1;Parent=rna-LLC55_RS04880;anticodon=(pos:1025442..1025444);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04880;product=tRNA-Val NZ_CP086200.1 RefSeq gene 1025513 1025589 . + . ID=gene-LLC55_RS04885;Name=LLC55_RS04885;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04885;old_locus_tag=LLC55_04885 NZ_CP086200.1 tRNAscan-SE tRNA 1025513 1025589 . + . ID=rna-LLC55_RS04885;Parent=gene-LLC55_RS04885;anticodon=(pos:1025547..1025549);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04885;product=tRNA-Asp NZ_CP086200.1 tRNAscan-SE exon 1025513 1025589 . + . ID=exon-LLC55_RS04885-1;Parent=rna-LLC55_RS04885;anticodon=(pos:1025547..1025549);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04885;product=tRNA-Asp NZ_CP086200.1 RefSeq gene 1025684 1025760 . + . ID=gene-LLC55_RS04890;Name=LLC55_RS04890;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04890;old_locus_tag=LLC55_04890 NZ_CP086200.1 tRNAscan-SE tRNA 1025684 1025760 . + . ID=rna-LLC55_RS04890;Parent=gene-LLC55_RS04890;anticodon=(pos:1025718..1025720);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04890;product=tRNA-Asp NZ_CP086200.1 tRNAscan-SE exon 1025684 1025760 . + . ID=exon-LLC55_RS04890-1;Parent=rna-LLC55_RS04890;anticodon=(pos:1025718..1025720);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04890;product=tRNA-Asp NZ_CP086200.1 RefSeq gene 1026230 1028200 . + . ID=gene-LLC55_RS04895;Name=LLC55_RS04895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04895;old_locus_tag=LLC55_04895 NZ_CP086200.1 Protein Homology CDS 1026230 1028200 . + 0 ID=cds-WP_011407728.1;Parent=gene-LLC55_RS04895;Dbxref=Genbank:WP_011407728.1;Name=WP_011407728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920425.1;locus_tag=LLC55_RS04895;product=peptidylprolyl isomerase;protein_id=WP_011407728.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1028906 1030084 . - . ID=gene-LLC55_RS04900;Name=LLC55_RS04900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04900;old_locus_tag=LLC55_04900 NZ_CP086200.1 Protein Homology CDS 1028906 1030084 . - 0 ID=cds-WP_011407729.1;Parent=gene-LLC55_RS04900;Dbxref=Genbank:WP_011407729.1;Name=WP_011407729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112895.1;locus_tag=LLC55_RS04900;product=lytic transglycosylase domain-containing protein;protein_id=WP_011407729.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1030081 1030848 . - . ID=gene-LLC55_RS04905;Name=gloB;gbkey=Gene;gene=gloB;gene_biotype=protein_coding;locus_tag=LLC55_RS04905;old_locus_tag=LLC55_04905 NZ_CP086200.1 Protein Homology CDS 1030081 1030848 . - 0 ID=cds-WP_011257886.1;Parent=gene-LLC55_RS04905;Dbxref=Genbank:WP_011257886.1;Name=WP_011257886.1;Ontology_term=GO:0019243,GO:0004416;gbkey=CDS;gene=gloB;go_function=hydroxyacylglutathione hydrolase activity|0004416||IEA;go_process=methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione|0019243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257886.1;locus_tag=LLC55_RS04905;product=hydroxyacylglutathione hydrolase;protein_id=WP_011257886.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1030861 1031517 . + . ID=gene-LLC55_RS04910;Name=LLC55_RS04910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04910;old_locus_tag=LLC55_04910 NZ_CP086200.1 Protein Homology CDS 1030861 1031517 . + 0 ID=cds-WP_011257887.1;Parent=gene-LLC55_RS04910;Dbxref=Genbank:WP_011257887.1;Name=WP_011257887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346590.1;locus_tag=LLC55_RS04910;product=hypothetical protein;protein_id=WP_011257887.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1031545 1031997 . + . ID=gene-LLC55_RS04915;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=LLC55_RS04915;old_locus_tag=LLC55_04915 NZ_CP086200.1 Protein Homology CDS 1031545 1031997 . + 0 ID=cds-WP_011257888.1;Parent=gene-LLC55_RS04915;Dbxref=Genbank:WP_011257888.1;Name=WP_011257888.1;Ontology_term=GO:0003676,GO:0004523;gbkey=CDS;gene=rnhA;go_function=nucleic acid binding|0003676||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158126.1;locus_tag=LLC55_RS04915;product=ribonuclease HI;protein_id=WP_011257888.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1032006 1032740 . + . ID=gene-LLC55_RS04920;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=LLC55_RS04920;old_locus_tag=LLC55_04920 NZ_CP086200.1 Protein Homology CDS 1032006 1032740 . + 0 ID=cds-WP_011257889.1;Parent=gene-LLC55_RS04920;Dbxref=Genbank:WP_011257889.1;Name=WP_011257889.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158127.1;locus_tag=LLC55_RS04920;product=DNA polymerase III subunit epsilon;protein_id=WP_011257889.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1032800 1032871 . + . ID=gene-LLC55_RS04925;Name=LLC55_RS04925;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS04925;old_locus_tag=LLC55_04925 NZ_CP086200.1 cmsearch ncRNA 1032800 1032871 . + . ID=rna-LLC55_RS04925;Parent=gene-LLC55_RS04925;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04925;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1032800 1032871 . + . ID=exon-LLC55_RS04925-1;Parent=rna-LLC55_RS04925;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS04925;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1033176 1033880 . - . ID=gene-LLC55_RS04930;Name=LLC55_RS04930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04930;old_locus_tag=LLC55_04930 NZ_CP086200.1 Protein Homology CDS 1033176 1033880 . - 0 ID=cds-WP_011257891.1;Parent=gene-LLC55_RS04930;Dbxref=Genbank:WP_011257891.1;Name=WP_011257891.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483822.1;locus_tag=LLC55_RS04930;product=protein phosphatase 2C domain-containing protein;protein_id=WP_011257891.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1034077 1034167 . + . ID=gene-LLC55_RS04935;Name=LLC55_RS04935;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS04935;old_locus_tag=LLC55_04935 NZ_CP086200.1 tRNAscan-SE tRNA 1034077 1034167 . + . ID=rna-LLC55_RS04935;Parent=gene-LLC55_RS04935;anticodon=(pos:1034111..1034113);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04935;product=tRNA-Ser NZ_CP086200.1 tRNAscan-SE exon 1034077 1034167 . + . ID=exon-LLC55_RS04935-1;Parent=rna-LLC55_RS04935;anticodon=(pos:1034111..1034113);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS04935;product=tRNA-Ser NZ_CP086200.1 RefSeq gene 1034706 1035335 . - . ID=gene-LLC55_RS04940;Name=LLC55_RS04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04940;old_locus_tag=LLC55_04940 NZ_CP086200.1 GeneMarkS-2+ CDS 1034706 1035335 . - 0 ID=cds-WP_041181989.1;Parent=gene-LLC55_RS04940;Dbxref=Genbank:WP_041181989.1;Name=WP_041181989.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS04940;product=hypothetical protein;protein_id=WP_041181989.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1035853 1036128 . + . ID=gene-LLC55_RS04945;Name=LLC55_RS04945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04945;old_locus_tag=LLC55_04945 NZ_CP086200.1 GeneMarkS-2+ CDS 1035853 1036128 . + 0 ID=cds-WP_011257892.1;Parent=gene-LLC55_RS04945;Dbxref=Genbank:WP_011257892.1;Name=WP_011257892.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS04945;product=DNA methyltransferase;protein_id=WP_011257892.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1036227 1036427 . + . ID=gene-LLC55_RS04950;Name=LLC55_RS04950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04950;old_locus_tag=LLC55_04950 NZ_CP086200.1 Protein Homology CDS 1036227 1036427 . + 0 ID=cds-WP_012445927.1;Parent=gene-LLC55_RS04950;Dbxref=Genbank:WP_012445927.1;Name=WP_012445927.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303605.1;locus_tag=LLC55_RS04950;product=hypothetical protein;protein_id=WP_012445927.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1036823 1039546 . + . ID=gene-LLC55_RS04955;Name=LLC55_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04955;old_locus_tag=LLC55_04955 NZ_CP086200.1 Protein Homology CDS 1036823 1039546 . + 0 ID=cds-WP_082325231.1;Parent=gene-LLC55_RS04955;Dbxref=Genbank:WP_082325231.1;Name=WP_082325231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257894.1;locus_tag=LLC55_RS04955;product=type VI secretion system Vgr family protein;protein_id=WP_082325231.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1039614 1041764 . + . ID=gene-LLC55_RS04960;Name=LLC55_RS04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04960;old_locus_tag=LLC55_04960 NZ_CP086200.1 Protein Homology CDS 1039614 1041764 . + 0 ID=cds-WP_069960070.1;Parent=gene-LLC55_RS04960;Dbxref=Genbank:WP_069960070.1;Name=WP_069960070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407734.1;locus_tag=LLC55_RS04960;product=DUF3274 domain-containing protein;protein_id=WP_069960070.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1041761 1043458 . + . ID=gene-LLC55_RS04965;Name=LLC55_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04965;old_locus_tag=LLC55_04965 NZ_CP086200.1 Protein Homology CDS 1041761 1043458 . + 0 ID=cds-WP_044757078.1;Parent=gene-LLC55_RS04965;Dbxref=Genbank:WP_044757078.1;Name=WP_044757078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257197.1;locus_tag=LLC55_RS04965;product=DUF2875 family protein;protein_id=WP_044757078.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1043455 1043601 . + . ID=gene-LLC55_RS04970;Name=LLC55_RS04970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04970;old_locus_tag=LLC55_04970 NZ_CP086200.1 Protein Homology CDS 1043455 1043601 . + 0 ID=cds-WP_012445919.1;Parent=gene-LLC55_RS04970;Dbxref=Genbank:WP_012445919.1;Name=WP_012445919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504125.1;locus_tag=LLC55_RS04970;product=membrane protein;protein_id=WP_012445919.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1043537 1043716 . + . ID=gene-LLC55_RS04975;Name=LLC55_RS04975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04975;old_locus_tag=LLC55_04975 NZ_CP086200.1 Protein Homology CDS 1043537 1043716 . + 0 ID=cds-WP_228329689.1;Parent=gene-LLC55_RS04975;Dbxref=Genbank:WP_228329689.1;Name=WP_228329689.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017315.2;locus_tag=LLC55_RS04975;product=PAAR domain-containing protein;protein_id=WP_228329689.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1043778 1044329 . + . ID=gene-LLC55_RS04980;Name=LLC55_RS04980;end_range=1044329,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS04980;old_locus_tag=LLC55_04980;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1043778 1044329 . + 0 ID=cds-LLC55_RS04980;Parent=gene-LLC55_RS04980;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1044329,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257196.1;locus_tag=LLC55_RS04980;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1044418 1045383 . + . ID=gene-LLC55_RS04985;Name=LLC55_RS04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04985;old_locus_tag=LLC55_04985 NZ_CP086200.1 Protein Homology CDS 1044418 1045383 . + 0 ID=cds-WP_109182094.1;Parent=gene-LLC55_RS04985;Dbxref=Genbank:WP_109182094.1;Name=WP_109182094.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS04985;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182094.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1045482 1046237 . - . ID=gene-LLC55_RS04990;Name=LLC55_RS04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04990;old_locus_tag=LLC55_04990 NZ_CP086200.1 GeneMarkS-2+ CDS 1045482 1046237 . - 0 ID=cds-WP_011257901.1;Parent=gene-LLC55_RS04990;Dbxref=Genbank:WP_011257901.1;Name=WP_011257901.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS04990;product=site-specific integrase;protein_id=WP_011257901.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1046279 1046683 . + . ID=gene-LLC55_RS04995;Name=LLC55_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS04995;old_locus_tag=LLC55_04995 NZ_CP086200.1 Protein Homology CDS 1046279 1046683 . + 0 ID=cds-WP_011257902.1;Parent=gene-LLC55_RS04995;Dbxref=Genbank:WP_011257902.1;Name=WP_011257902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968982.1;locus_tag=LLC55_RS04995;product=DUF6165 family protein;protein_id=WP_011257902.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1046894 1047943 . - . ID=gene-LLC55_RS05000;Name=LLC55_RS05000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05000;old_locus_tag=LLC55_05000 NZ_CP086200.1 Protein Homology CDS 1046894 1047943 . - 0 ID=cds-WP_011407740.1;Parent=gene-LLC55_RS05000;Dbxref=Genbank:WP_011407740.1;Name=WP_011407740.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050699.1;locus_tag=LLC55_RS05000;product=glycosyltransferase family 9 protein;protein_id=WP_011407740.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1047964 1048713 . + . ID=gene-LLC55_RS05005;Name=LLC55_RS05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05005;old_locus_tag=LLC55_05005 NZ_CP086200.1 Protein Homology CDS 1047964 1048713 . + 0 ID=cds-WP_011257904.1;Parent=gene-LLC55_RS05005;Dbxref=Genbank:WP_011257904.1;Name=WP_011257904.1;Ontology_term=GO:0016773;gbkey=CDS;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305198.1;locus_tag=LLC55_RS05005;product=3-deoxy-D-manno-octulosonic acid kinase;protein_id=WP_011257904.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1048713 1049462 . + . ID=gene-LLC55_RS05010;Name=LLC55_RS05010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05010;old_locus_tag=LLC55_05010 NZ_CP086200.1 Protein Homology CDS 1048713 1049462 . + 0 ID=cds-WP_011257905.1;Parent=gene-LLC55_RS05010;Dbxref=Genbank:WP_011257905.1;Name=WP_011257905.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158132.1;locus_tag=LLC55_RS05010;product=MBL fold metallo-hydrolase;protein_id=WP_011257905.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1049462 1050493 . + . ID=gene-LLC55_RS05015;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=LLC55_RS05015;old_locus_tag=LLC55_05015 NZ_CP086200.1 Protein Homology CDS 1049462 1050493 . + 0 ID=cds-WP_011257906.1;Parent=gene-LLC55_RS05015;Dbxref=Genbank:WP_011257906.1;Name=WP_011257906.1;Ontology_term=GO:0006777,GO:0051539;gbkey=CDS;gene=moaA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814367.1;locus_tag=LLC55_RS05015;product=GTP 3'%2C8-cyclase MoaA;protein_id=WP_011257906.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1050571 1050870 . + . ID=gene-LLC55_RS05020;Name=LLC55_RS05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05020;old_locus_tag=LLC55_05020 NZ_CP086200.1 Protein Homology CDS 1050571 1050870 . + 0 ID=cds-WP_229001936.1;Parent=gene-LLC55_RS05020;Dbxref=Genbank:WP_229001936.1;Name=WP_229001936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158134.1;locus_tag=LLC55_RS05020;product=DUF4440 domain-containing protein;protein_id=WP_229001936.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1050895 1051392 . + . ID=gene-LLC55_RS05025;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=LLC55_RS05025;old_locus_tag=LLC55_05025 NZ_CP086200.1 Protein Homology CDS 1050895 1051392 . + 0 ID=cds-WP_011407742.1;Parent=gene-LLC55_RS05025;Dbxref=Genbank:WP_011407742.1;Name=WP_011407742.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=moaC;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159642.1;locus_tag=LLC55_RS05025;product=cyclic pyranopterin monophosphate synthase MoaC;protein_id=WP_011407742.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1051389 1051634 . + . ID=gene-LLC55_RS05030;Name=LLC55_RS05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05030;old_locus_tag=LLC55_05030 NZ_CP086200.1 Protein Homology CDS 1051389 1051634 . + 0 ID=cds-WP_011257909.1;Parent=gene-LLC55_RS05030;Dbxref=Genbank:WP_011257909.1;Name=WP_011257909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257909.1;locus_tag=LLC55_RS05030;product=MoaD/ThiS family protein;protein_id=WP_011257909.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1051631 1052077 . + . ID=gene-LLC55_RS05035;Name=LLC55_RS05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05035;old_locus_tag=LLC55_05035 NZ_CP086200.1 Protein Homology CDS 1051631 1052077 . + 0 ID=cds-WP_011257910.1;Parent=gene-LLC55_RS05035;Dbxref=Genbank:WP_011257910.1;Name=WP_011257910.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158137.1;locus_tag=LLC55_RS05035;product=molybdenum cofactor biosynthesis protein MoaE;protein_id=WP_011257910.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1052239 1052335 . - . ID=gene-LLC55_RS05040;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=LLC55_RS05040;old_locus_tag=LLC55_05040 NZ_CP086200.1 cmsearch SRP_RNA 1052239 1052335 . - . ID=rna-LLC55_RS05040;Parent=gene-LLC55_RS05040;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05040;product=signal recognition particle sRNA small type NZ_CP086200.1 cmsearch exon 1052239 1052335 . - . ID=exon-LLC55_RS05040-1;Parent=rna-LLC55_RS05040;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05040;product=signal recognition particle sRNA small type NZ_CP086200.1 RefSeq gene 1052411 1052503 . - . ID=gene-LLC55_RS05045;Name=LLC55_RS05045;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS05045;old_locus_tag=LLC55_05045 NZ_CP086200.1 tRNAscan-SE tRNA 1052411 1052503 . - . ID=rna-LLC55_RS05045;Parent=gene-LLC55_RS05045;anticodon=(pos:complement(1052467..1052469));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS05045;product=tRNA-Ser NZ_CP086200.1 tRNAscan-SE exon 1052411 1052503 . - . ID=exon-LLC55_RS05045-1;Parent=rna-LLC55_RS05045;anticodon=(pos:complement(1052467..1052469));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS05045;product=tRNA-Ser NZ_CP086200.1 RefSeq gene 1052639 1054735 . + . ID=gene-LLC55_RS05050;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=LLC55_RS05050;old_locus_tag=LLC55_05050 NZ_CP086200.1 Protein Homology CDS 1052639 1054735 . + 0 ID=cds-WP_011257911.1;Parent=gene-LLC55_RS05050;Dbxref=Genbank:WP_011257911.1;Name=WP_011257911.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155800.1;locus_tag=LLC55_RS05050;product=DNA polymerase III subunit gamma/tau;protein_id=WP_011257911.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1054742 1055062 . + . ID=gene-LLC55_RS05055;Name=LLC55_RS05055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05055;old_locus_tag=LLC55_05055 NZ_CP086200.1 Protein Homology CDS 1054742 1055062 . + 0 ID=cds-WP_011257912.1;Parent=gene-LLC55_RS05055;Dbxref=Genbank:WP_011257912.1;Name=WP_011257912.1;Ontology_term=GO:0008150,GO:0003677,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346622.1;locus_tag=LLC55_RS05055;product=YbaB/EbfC family nucleoid-associated protein;protein_id=WP_011257912.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1055160 1055753 . + . ID=gene-LLC55_RS05060;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=LLC55_RS05060;old_locus_tag=LLC55_05060 NZ_CP086200.1 Protein Homology CDS 1055160 1055753 . + 0 ID=cds-WP_011257913.1;Parent=gene-LLC55_RS05060;Dbxref=Genbank:WP_011257913.1;Name=WP_011257913.1;Ontology_term=GO:0006281,GO:0006310;gbkey=CDS;gene=recR;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483843.1;locus_tag=LLC55_RS05060;product=recombination mediator RecR;protein_id=WP_011257913.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1055855 1056205 . + . ID=gene-LLC55_RS05065;Name=LLC55_RS05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05065;old_locus_tag=LLC55_05065 NZ_CP086200.1 Protein Homology CDS 1055855 1056205 . + 0 ID=cds-WP_011407744.1;Parent=gene-LLC55_RS05065;Dbxref=Genbank:WP_011407744.1;Name=WP_011407744.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155799.1;locus_tag=LLC55_RS05065;product=histidine triad nucleotide-binding protein;protein_id=WP_011407744.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1056325 1056858 . - . ID=gene-LLC55_RS05070;Name=LLC55_RS05070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05070;old_locus_tag=LLC55_05070 NZ_CP086200.1 Protein Homology CDS 1056325 1056858 . - 0 ID=cds-WP_011257915.1;Parent=gene-LLC55_RS05070;Dbxref=Genbank:WP_011257915.1;Name=WP_011257915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920486.1;locus_tag=LLC55_RS05070;product=Slp family lipoprotein;protein_id=WP_011257915.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1056855 1058807 . - . ID=gene-LLC55_RS05075;Name=LLC55_RS05075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05075;old_locus_tag=LLC55_05075 NZ_CP086200.1 Protein Homology CDS 1056855 1058807 . - 0 ID=cds-WP_011257916.1;Parent=gene-LLC55_RS05075;Dbxref=Genbank:WP_011257916.1;Name=WP_011257916.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346625.1;locus_tag=LLC55_RS05075;product=DUF3488 and transglutaminase-like domain-containing protein;protein_id=WP_011257916.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1058800 1059756 . - . ID=gene-LLC55_RS05080;Name=LLC55_RS05080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05080;old_locus_tag=LLC55_05080 NZ_CP086200.1 Protein Homology CDS 1058800 1059756 . - 0 ID=cds-WP_011257917.1;Parent=gene-LLC55_RS05080;Dbxref=Genbank:WP_011257917.1;Name=WP_011257917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850007.1;locus_tag=LLC55_RS05080;product=DUF58 domain-containing protein;protein_id=WP_011257917.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1059762 1060715 . - . ID=gene-LLC55_RS05085;Name=LLC55_RS05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05085;old_locus_tag=LLC55_05085 NZ_CP086200.1 Protein Homology CDS 1059762 1060715 . - 0 ID=cds-WP_011407746.1;Parent=gene-LLC55_RS05085;Dbxref=Genbank:WP_011407746.1;Name=WP_011407746.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502249.1;locus_tag=LLC55_RS05085;product=MoxR family ATPase;protein_id=WP_011407746.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1060754 1062622 . + . ID=gene-LLC55_RS05090;Name=LLC55_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05090;old_locus_tag=LLC55_05090 NZ_CP086200.1 Protein Homology CDS 1060754 1062622 . + 0 ID=cds-WP_012445908.1;Parent=gene-LLC55_RS05090;Dbxref=Genbank:WP_012445908.1;Name=WP_012445908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303142.1;locus_tag=LLC55_RS05090;product=glycosyltransferase family 39 protein;protein_id=WP_012445908.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1062809 1063156 . + . ID=gene-LLC55_RS05095;Name=LLC55_RS05095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05095;old_locus_tag=LLC55_05095 NZ_CP086200.1 GeneMarkS-2+ CDS 1062809 1063156 . + 0 ID=cds-WP_228329690.1;Parent=gene-LLC55_RS05095;Dbxref=Genbank:WP_228329690.1;Name=WP_228329690.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS05095;product=hypothetical protein;protein_id=WP_228329690.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1063394 1063816 . + . ID=gene-LLC55_RS05100;Name=arsC;gbkey=Gene;gene=arsC;gene_biotype=pseudogene;locus_tag=LLC55_RS05100;old_locus_tag=LLC55_05100;pseudo=true NZ_CP086200.1 Protein Homology CDS 1063394 1063816 . + 0 ID=cds-LLC55_RS05100;Parent=gene-LLC55_RS05100;Note=This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite%2C after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell%2C providing resistance.%3B internal stop;Ontology_term=GO:0008794;gbkey=CDS;gene=arsC;go_function=arsenate reductase (glutaredoxin) activity|0008794||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483474.1;locus_tag=LLC55_RS05100;product=arsenate reductase (glutaredoxin);pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1064138 1064653 . + . ID=gene-LLC55_RS05105;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=LLC55_RS05105;old_locus_tag=LLC55_05105 NZ_CP086200.1 Protein Homology CDS 1064138 1064653 . + 0 ID=cds-WP_011407749.1;Parent=gene-LLC55_RS05105;Dbxref=Genbank:WP_011407749.1;Name=WP_011407749.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303679.1;locus_tag=LLC55_RS05105;product=peptide deformylase;protein_id=WP_011407749.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1064752 1064828 . + . ID=gene-LLC55_RS05110;Name=LLC55_RS05110;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS05110;old_locus_tag=LLC55_05110 NZ_CP086200.1 cmsearch ncRNA 1064752 1064828 . + . ID=rna-LLC55_RS05110;Parent=gene-LLC55_RS05110;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05110;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1064752 1064828 . + . ID=exon-LLC55_RS05110-1;Parent=rna-LLC55_RS05110;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05110;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 1065170 1065983 . + . ID=gene-LLC55_RS05115;Name=LLC55_RS05115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05115;old_locus_tag=LLC55_05115;pseudo=true NZ_CP086200.1 Protein Homology CDS 1065170 1065983 . + 0 ID=cds-LLC55_RS05115;Parent=gene-LLC55_RS05115;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171825.1;locus_tag=LLC55_RS05115;product=cellulase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1066401 1067147 . + . ID=gene-LLC55_RS05120;Name=LLC55_RS05120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05120;old_locus_tag=LLC55_05120 NZ_CP086200.1 Protein Homology CDS 1066401 1067147 . + 0 ID=cds-WP_041182379.1;Parent=gene-LLC55_RS05120;Dbxref=Genbank:WP_041182379.1;Name=WP_041182379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365555.1;locus_tag=LLC55_RS05120;product=cellulase;protein_id=WP_041182379.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1067541 1067617 . - . ID=gene-LLC55_RS05125;Name=LLC55_RS05125;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS05125;old_locus_tag=LLC55_05125 NZ_CP086200.1 cmsearch ncRNA 1067541 1067617 . - . ID=rna-LLC55_RS05125;Parent=gene-LLC55_RS05125;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05125;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1067541 1067617 . - . ID=exon-LLC55_RS05125-1;Parent=rna-LLC55_RS05125;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05125;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1067764 1069365 . - . ID=gene-LLC55_RS05130;Name=LLC55_RS05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05130;old_locus_tag=LLC55_05130 NZ_CP086200.1 Protein Homology CDS 1067764 1069365 . - 0 ID=cds-WP_011407751.1;Parent=gene-LLC55_RS05130;Dbxref=Genbank:WP_011407751.1;Name=WP_011407751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850148.1;locus_tag=LLC55_RS05130;product=polysaccharide lyase family protein;protein_id=WP_011407751.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1069726 1070052 . - . ID=gene-LLC55_RS05135;Name=LLC55_RS05135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05135;old_locus_tag=LLC55_05135;pseudo=true NZ_CP086200.1 Protein Homology CDS 1069726 1070052 . - 0 ID=cds-LLC55_RS05135;Parent=gene-LLC55_RS05135;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091038.1;locus_tag=LLC55_RS05135;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1070354 1071589 . + . ID=gene-LLC55_RS05140;Name=LLC55_RS05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05140;old_locus_tag=LLC55_05140 NZ_CP086200.1 Protein Homology CDS 1070354 1071589 . + 0 ID=cds-WP_011257570.1;Parent=gene-LLC55_RS05140;Dbxref=Genbank:WP_011257570.1;Name=WP_011257570.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS05140;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011257570.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1071627 1072283 . - . ID=gene-LLC55_RS05145;Name=LLC55_RS05145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05145;old_locus_tag=LLC55_05145 NZ_CP086200.1 GeneMarkS-2+ CDS 1071627 1072283 . - 0 ID=cds-WP_075246166.1;Parent=gene-LLC55_RS05145;Dbxref=Genbank:WP_075246166.1;Name=WP_075246166.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS05145;product=phosphate phosphatase;protein_id=WP_075246166.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1072418 1073386 . - . ID=gene-LLC55_RS05150;Name=LLC55_RS05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05150;old_locus_tag=LLC55_05150 NZ_CP086200.1 Protein Homology CDS 1072418 1073386 . - 0 ID=cds-WP_011258802.1-4;Parent=gene-LLC55_RS05150;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS05150;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1073438 1073857 . - . ID=gene-LLC55_RS05155;Name=LLC55_RS05155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05155;old_locus_tag=LLC55_05155 NZ_CP086200.1 Protein Homology CDS 1073438 1073857 . - 0 ID=cds-WP_011407754.1;Parent=gene-LLC55_RS05155;Dbxref=Genbank:WP_011407754.1;Name=WP_011407754.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013798.2;locus_tag=LLC55_RS05155;product=macro domain-containing protein;protein_id=WP_011407754.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1073854 1074183 . - . ID=gene-LLC55_RS05160;Name=LLC55_RS05160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05160;old_locus_tag=LLC55_05160 NZ_CP086200.1 Protein Homology CDS 1073854 1074183 . - 0 ID=cds-WP_199285672.1;Parent=gene-LLC55_RS05160;Dbxref=Genbank:WP_199285672.1;Name=WP_199285672.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025840.2;locus_tag=LLC55_RS05160;product=DUF4433 domain-containing protein;protein_id=WP_199285672.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1074286 1075605 . + . ID=gene-LLC55_RS05165;Name=LLC55_RS05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05165;old_locus_tag=LLC55_05165 NZ_CP086200.1 Protein Homology CDS 1074286 1075605 . + 0 ID=cds-WP_011407756.1;Parent=gene-LLC55_RS05165;Dbxref=Genbank:WP_011407756.1;Name=WP_011407756.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS05165;product=IS701 family transposase;protein_id=WP_011407756.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1075649 1075984 . - . ID=gene-LLC55_RS05170;Name=LLC55_RS05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05170;old_locus_tag=LLC55_05170 NZ_CP086200.1 Protein Homology CDS 1075649 1075984 . - 0 ID=cds-WP_011407757.1;Parent=gene-LLC55_RS05170;Dbxref=Genbank:WP_011407757.1;Name=WP_011407757.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025840.2;locus_tag=LLC55_RS05170;product=DarT ssDNA thymidine ADP-ribosyltransferase family protein;protein_id=WP_011407757.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1076316 1077242 . - . ID=gene-LLC55_RS05175;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=LLC55_RS05175;old_locus_tag=LLC55_05175 NZ_CP086200.1 Protein Homology CDS 1076316 1077242 . - 0 ID=cds-WP_011257932.1;Parent=gene-LLC55_RS05175;Dbxref=Genbank:WP_011257932.1;Name=WP_011257932.1;Ontology_term=GO:0009055;gbkey=CDS;gene=grxD;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913558.1;locus_tag=LLC55_RS05175;product=Grx4 family monothiol glutaredoxin;protein_id=WP_011257932.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1077288 1078079 . + . ID=gene-LLC55_RS05180;Name=LLC55_RS05180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05180;old_locus_tag=LLC55_05180 NZ_CP086200.1 Protein Homology CDS 1077288 1078079 . + 0 ID=cds-WP_011407758.1;Parent=gene-LLC55_RS05180;Dbxref=Genbank:WP_011407758.1;Name=WP_011407758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407758.1;locus_tag=LLC55_RS05180;product=polysaccharide deacetylase family protein;protein_id=WP_011407758.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1078084 1078160 . - . ID=gene-LLC55_RS05185;Name=LLC55_RS05185;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS05185;old_locus_tag=LLC55_05185 NZ_CP086200.1 cmsearch ncRNA 1078084 1078160 . - . ID=rna-LLC55_RS05185;Parent=gene-LLC55_RS05185;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05185;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1078084 1078160 . - . ID=exon-LLC55_RS05185-1;Parent=rna-LLC55_RS05185;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05185;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1078381 1079052 . - . ID=gene-LLC55_RS05190;Name=LLC55_RS05190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05190;old_locus_tag=LLC55_05190 NZ_CP086200.1 Protein Homology CDS 1078381 1079052 . - 0 ID=cds-WP_011407759.1;Parent=gene-LLC55_RS05190;Dbxref=Genbank:WP_011407759.1;Name=WP_011407759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038464.1;locus_tag=LLC55_RS05190;product=class I SAM-dependent methyltransferase;protein_id=WP_011407759.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1079375 1080013 . - . ID=gene-LLC55_RS05195;Name=LLC55_RS05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05195;old_locus_tag=LLC55_05195 NZ_CP086200.1 Protein Homology CDS 1079375 1080013 . - 0 ID=cds-WP_011407760.1;Parent=gene-LLC55_RS05195;Dbxref=Genbank:WP_011407760.1;Name=WP_011407760.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171955.1;locus_tag=LLC55_RS05195;product=SGNH/GDSL hydrolase family protein;protein_id=WP_011407760.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1080013 1081284 . - . ID=gene-LLC55_RS05200;Name=LLC55_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05200;old_locus_tag=LLC55_05200 NZ_CP086200.1 Protein Homology CDS 1080013 1081284 . - 0 ID=cds-WP_011257936.1;Parent=gene-LLC55_RS05200;Dbxref=Genbank:WP_011257936.1;Name=WP_011257936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902304.1;locus_tag=LLC55_RS05200;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_011257936.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1081438 1082529 . + . ID=gene-LLC55_RS05205;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=LLC55_RS05205;old_locus_tag=LLC55_05205 NZ_CP086200.1 Protein Homology CDS 1081438 1082529 . + 0 ID=cds-WP_011257937.1;Parent=gene-LLC55_RS05205;Dbxref=Genbank:WP_011257937.1;Name=WP_011257937.1;Ontology_term=GO:0006412,GO:0005525,GO:0043022;gbkey=CDS;gene=rsgA;go_function=GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038460.1;locus_tag=LLC55_RS05205;product=ribosome small subunit-dependent GTPase A;protein_id=WP_011257937.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1082529 1083791 . + . ID=gene-LLC55_RS05210;Name=LLC55_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05210;old_locus_tag=LLC55_05210 NZ_CP086200.1 Protein Homology CDS 1082529 1083791 . + 0 ID=cds-WP_011257938.1;Parent=gene-LLC55_RS05210;Dbxref=Genbank:WP_011257938.1;Name=WP_011257938.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365514.1;locus_tag=LLC55_RS05210;product=flavohemoglobin expression-modulating QEGLA motif protein;protein_id=WP_011257938.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1083944 1084624 . + . ID=gene-LLC55_RS05215;Name=LLC55_RS05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05215;old_locus_tag=LLC55_05215 NZ_CP086200.1 Protein Homology CDS 1083944 1084624 . + 0 ID=cds-WP_011407761.1;Parent=gene-LLC55_RS05215;Dbxref=Genbank:WP_011407761.1;Name=WP_011407761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157539.1;locus_tag=LLC55_RS05215;product=type 1 glutamine amidotransferase domain-containing protein;protein_id=WP_011407761.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1084791 1086707 . - . ID=gene-LLC55_RS05220;Name=LLC55_RS05220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05220;old_locus_tag=LLC55_05220 NZ_CP086200.1 Protein Homology CDS 1084791 1086707 . - 0 ID=cds-WP_011407762.1;Parent=gene-LLC55_RS05220;Dbxref=Genbank:WP_011407762.1;Name=WP_011407762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365510.1;locus_tag=LLC55_RS05220;product=amylosucrase;protein_id=WP_011407762.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1086742 1089186 . - . ID=gene-LLC55_RS05225;Name=LLC55_RS05225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05225;old_locus_tag=LLC55_05225 NZ_CP086200.1 Protein Homology CDS 1086742 1089186 . - 0 ID=cds-WP_011407763.1;Parent=gene-LLC55_RS05225;Dbxref=Genbank:WP_011407763.1;Name=WP_011407763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174521.1;locus_tag=LLC55_RS05225;product=TonB-dependent receptor;protein_id=WP_011407763.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1089456 1090787 . + . ID=gene-LLC55_RS05230;Name=LLC55_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05230;old_locus_tag=LLC55_05230 NZ_CP086200.1 Protein Homology CDS 1089456 1090787 . + 0 ID=cds-WP_011407764.1;Parent=gene-LLC55_RS05230;Dbxref=Genbank:WP_011407764.1;Name=WP_011407764.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407764.1;locus_tag=LLC55_RS05230;product=MFS transporter;protein_id=WP_011407764.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1090835 1090899 . + . ID=gene-LLC55_RS05235;Name=LLC55_RS05235;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS05235;old_locus_tag=LLC55_05235 NZ_CP086200.1 cmsearch ncRNA 1090835 1090899 . + . ID=rna-LLC55_RS05235;Parent=gene-LLC55_RS05235;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05235;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1090835 1090899 . + . ID=exon-LLC55_RS05235-1;Parent=rna-LLC55_RS05235;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05235;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1091028 1092059 . - . ID=gene-LLC55_RS05240;Name=LLC55_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05240;old_locus_tag=LLC55_05240 NZ_CP086200.1 Protein Homology CDS 1091028 1092059 . - 0 ID=cds-WP_011407765.1;Parent=gene-LLC55_RS05240;Dbxref=Genbank:WP_011407765.1;Name=WP_011407765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932772.1;locus_tag=LLC55_RS05240;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_011407765.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1092300 1093040 . - . ID=gene-LLC55_RS05245;Name=phbB;gbkey=Gene;gene=phbB;gene_biotype=protein_coding;locus_tag=LLC55_RS05245;old_locus_tag=LLC55_05245 NZ_CP086200.1 Protein Homology CDS 1092300 1093040 . - 0 ID=cds-WP_011407766.1;Parent=gene-LLC55_RS05245;Dbxref=Genbank:WP_011407766.1;Name=WP_011407766.1;Ontology_term=GO:0042619,GO:0018454;gbkey=CDS;gene=phbB;go_function=acetoacetyl-CoA reductase activity|0018454||IEA;go_process=poly-hydroxybutyrate biosynthetic process|0042619||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006391443.1;locus_tag=LLC55_RS05245;product=acetoacetyl-CoA reductase;protein_id=WP_011407766.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1093152 1094480 . - . ID=gene-LLC55_RS05250;Name=LLC55_RS05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05250;old_locus_tag=LLC55_05250 NZ_CP086200.1 Protein Homology CDS 1093152 1094480 . - 0 ID=cds-WP_011257945.1;Parent=gene-LLC55_RS05250;Dbxref=Genbank:WP_011257945.1;Name=WP_011257945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483418.1;locus_tag=LLC55_RS05250;product=CitMHS family transporter;protein_id=WP_011257945.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1094708 1095901 . - . ID=gene-LLC55_RS05255;Name=LLC55_RS05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05255;old_locus_tag=LLC55_05255 NZ_CP086200.1 Protein Homology CDS 1094708 1095901 . - 0 ID=cds-WP_011407767.1;Parent=gene-LLC55_RS05255;Dbxref=Genbank:WP_011407767.1;Name=WP_011407767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157498.1;locus_tag=LLC55_RS05255;product=OprO/OprP family phosphate-selective porin;protein_id=WP_011407767.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1096157 1096858 . + . ID=gene-LLC55_RS05260;Name=LLC55_RS05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05260;old_locus_tag=LLC55_05260 NZ_CP086200.1 Protein Homology CDS 1096157 1096858 . + 0 ID=cds-WP_011407768.1;Parent=gene-LLC55_RS05260;Dbxref=Genbank:WP_011407768.1;Name=WP_011407768.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163399.1;locus_tag=LLC55_RS05260;product=response regulator;protein_id=WP_011407768.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1096851 1098236 . + . ID=gene-LLC55_RS05265;Name=LLC55_RS05265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05265;old_locus_tag=LLC55_05265 NZ_CP086200.1 Protein Homology CDS 1096851 1098236 . + 0 ID=cds-WP_011407769.1;Parent=gene-LLC55_RS05265;Dbxref=Genbank:WP_011407769.1;Name=WP_011407769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932775.1;locus_tag=LLC55_RS05265;product=sensor histidine kinase;protein_id=WP_011407769.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1098236 1099285 . + . ID=gene-LLC55_RS05270;Name=LLC55_RS05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05270;old_locus_tag=LLC55_05270 NZ_CP086200.1 Protein Homology CDS 1098236 1099285 . + 0 ID=cds-WP_011407770.1;Parent=gene-LLC55_RS05270;Dbxref=Genbank:WP_011407770.1;Name=WP_011407770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157495.1;locus_tag=LLC55_RS05270;product=ABC transporter substrate-binding protein;protein_id=WP_011407770.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1099325 1099963 . + . ID=gene-LLC55_RS05275;Name=LLC55_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05275;old_locus_tag=LLC55_05275 NZ_CP086200.1 Protein Homology CDS 1099325 1099963 . + 0 ID=cds-WP_011257949.1;Parent=gene-LLC55_RS05275;Dbxref=Genbank:WP_011257949.1;Name=WP_011257949.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257949.1;locus_tag=LLC55_RS05275;product=response regulator transcription factor;protein_id=WP_011257949.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1100094 1100462 . - . ID=gene-LLC55_RS05280;Name=LLC55_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05280;old_locus_tag=LLC55_05280 NZ_CP086200.1 Protein Homology CDS 1100094 1100462 . - 0 ID=cds-WP_041182382.1;Parent=gene-LLC55_RS05280;Dbxref=Genbank:WP_041182382.1;Name=WP_041182382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167386.1;locus_tag=LLC55_RS05280;product=Atu4866 domain-containing protein;protein_id=WP_041182382.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1100479 1101018 . - . ID=gene-LLC55_RS05285;Name=LLC55_RS05285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05285;old_locus_tag=LLC55_05285;partial=true;pseudo=true;start_range=.,1100479 NZ_CP086200.1 Protein Homology CDS 1100479 1101018 . - 0 ID=cds-LLC55_RS05285;Parent=gene-LLC55_RS05285;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091015.1;locus_tag=LLC55_RS05285;partial=true;product=nuclear transport factor 2 family protein;pseudo=true;start_range=.,1100479;transl_table=11 NZ_CP086200.1 RefSeq gene 1101015 1101653 . - . ID=gene-LLC55_RS05290;Name=LLC55_RS05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05290;old_locus_tag=LLC55_05290 NZ_CP086200.1 Protein Homology CDS 1101015 1101653 . - 0 ID=cds-WP_011407771.1;Parent=gene-LLC55_RS05290;Dbxref=Genbank:WP_011407771.1;Name=WP_011407771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851541.1;locus_tag=LLC55_RS05290;product=aldo/keto reductase;protein_id=WP_011407771.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1101962 1102864 . + . ID=gene-LLC55_RS05295;Name=LLC55_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05295;old_locus_tag=LLC55_05295 NZ_CP086200.1 Protein Homology CDS 1101962 1102864 . + 0 ID=cds-WP_011257953.1;Parent=gene-LLC55_RS05295;Dbxref=Genbank:WP_011257953.1;Name=WP_011257953.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159489.1;locus_tag=LLC55_RS05295;product=LysR family transcriptional regulator;protein_id=WP_011257953.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1102856 1103635 . - . ID=gene-LLC55_RS05300;Name=LLC55_RS05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05300;old_locus_tag=LLC55_05300 NZ_CP086200.1 Protein Homology CDS 1102856 1103635 . - 0 ID=cds-WP_011257955.1;Parent=gene-LLC55_RS05300;Dbxref=Genbank:WP_011257955.1;Name=WP_011257955.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376702.1;locus_tag=LLC55_RS05300;product=substrate-binding domain-containing protein;protein_id=WP_011257955.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1103632 1104981 . - . ID=gene-LLC55_RS05305;Name=LLC55_RS05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05305;old_locus_tag=LLC55_05305 NZ_CP086200.1 Protein Homology CDS 1103632 1104981 . - 0 ID=cds-WP_011407772.1;Parent=gene-LLC55_RS05305;Dbxref=Genbank:WP_011407772.1;Name=WP_011407772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157488.1;locus_tag=LLC55_RS05305;product=MFS transporter;protein_id=WP_011407772.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1105297 1107942 . - . ID=gene-LLC55_RS05310;Name=LLC55_RS05310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05310;old_locus_tag=LLC55_05310 NZ_CP086200.1 Protein Homology CDS 1105297 1107942 . - 0 ID=cds-WP_011407773.1;Parent=gene-LLC55_RS05310;Dbxref=Genbank:WP_011407773.1;Name=WP_011407773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160257.1;locus_tag=LLC55_RS05310;product=PAS-domain containing protein;protein_id=WP_011407773.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1108050 1108125 . + . ID=gene-LLC55_RS05315;Name=LLC55_RS05315;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS05315;old_locus_tag=LLC55_05315 NZ_CP086200.1 cmsearch ncRNA 1108050 1108125 . + . ID=rna-LLC55_RS05315;Parent=gene-LLC55_RS05315;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05315;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1108050 1108125 . + . ID=exon-LLC55_RS05315-1;Parent=rna-LLC55_RS05315;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05315;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1108264 1109436 . - . ID=gene-LLC55_RS05320;Name=LLC55_RS05320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05320;old_locus_tag=LLC55_05320 NZ_CP086200.1 Protein Homology CDS 1108264 1109436 . - 0 ID=cds-WP_011407774.1;Parent=gene-LLC55_RS05320;Dbxref=Genbank:WP_011407774.1;Name=WP_011407774.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964505.1;locus_tag=LLC55_RS05320;product=porin;protein_id=WP_011407774.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1109727 1111100 . + . ID=gene-LLC55_RS05325;Name=LLC55_RS05325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05325;old_locus_tag=LLC55_05325 NZ_CP086200.1 Protein Homology CDS 1109727 1111100 . + 0 ID=cds-WP_011407775.1;Parent=gene-LLC55_RS05325;Dbxref=Genbank:WP_011407775.1;Name=WP_011407775.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928723.1;locus_tag=LLC55_RS05325;product=dicarboxylate/amino acid:cation symporter;protein_id=WP_011407775.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1111298 1113607 . + . ID=gene-LLC55_RS05330;Name=LLC55_RS05330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05330;old_locus_tag=LLC55_05330 NZ_CP086200.1 Protein Homology CDS 1111298 1113607 . + 0 ID=cds-WP_011257960.1;Parent=gene-LLC55_RS05330;Dbxref=Genbank:WP_011257960.1;Name=WP_011257960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157485.1;locus_tag=LLC55_RS05330;product=NADP-dependent malic enzyme;protein_id=WP_011257960.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1113783 1113926 . - . ID=gene-LLC55_RS05335;Name=LLC55_RS05335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05335;old_locus_tag=LLC55_05335 NZ_CP086200.1 Protein Homology CDS 1113783 1113926 . - 0 ID=cds-WP_033013246.1;Parent=gene-LLC55_RS05335;Dbxref=Genbank:WP_033013246.1;Name=WP_033013246.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304944.1;locus_tag=LLC55_RS05335;product=hypothetical protein;protein_id=WP_033013246.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1114078 1114182 . - . ID=gene-LLC55_RS05340;Name=LLC55_RS05340;end_range=1114182,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05340;old_locus_tag=LLC55_05340;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1114078 1114182 . - 0 ID=cds-LLC55_RS05340;Parent=gene-LLC55_RS05340;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1114182,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS05340;partial=true;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1114396 1115438 . + . ID=gene-LLC55_RS05345;Name=LLC55_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05345;old_locus_tag=LLC55_05345 NZ_CP086200.1 Protein Homology CDS 1114396 1114591 . + 0 ID=cds-WP_229001935.1;Parent=gene-LLC55_RS05345;Dbxref=Genbank:WP_229001935.1;Name=WP_229001935.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS05345;product=IS3 family transposase;protein_id=WP_229001935.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1114591 1115438 . + 2 ID=cds-WP_229001935.1;Parent=gene-LLC55_RS05345;Dbxref=Genbank:WP_229001935.1;Name=WP_229001935.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS05345;product=IS3 family transposase;protein_id=WP_229001935.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1115471 1116525 . - . ID=gene-LLC55_RS05350;Name=LLC55_RS05350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05350;old_locus_tag=LLC55_05350;partial=true;pseudo=true;start_range=.,1115471 NZ_CP086200.1 Protein Homology CDS 1115471 1116525 . - 0 ID=cds-LLC55_RS05350;Parent=gene-LLC55_RS05350;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1;locus_tag=LLC55_RS05350;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,1115471;transl_table=11 NZ_CP086200.1 cmsearch sequence_feature 1116134 1116250 . - . ID=id-LLC55_RS05350;Dbxref=RFAM:RF01497;Note=AL1L pseudoknot;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05350;pseudo=true NZ_CP086200.1 RefSeq pseudogene 1116577 1116807 . - . ID=gene-LLC55_RS05355;Name=LLC55_RS05355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05355;old_locus_tag=LLC55_05355;partial=true;pseudo=true;start_range=.,1116577 NZ_CP086200.1 Protein Homology CDS 1116577 1116807 . - 0 ID=cds-LLC55_RS05355;Parent=gene-LLC55_RS05355;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611821.1;locus_tag=LLC55_RS05355;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,1116577;transl_table=11 NZ_CP086200.1 RefSeq gene 1116868 1117491 . - . ID=gene-LLC55_RS05360;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=LLC55_RS05360;old_locus_tag=LLC55_05360 NZ_CP086200.1 Protein Homology CDS 1116868 1117491 . - 0 ID=cds-WP_011407778.1;Parent=gene-LLC55_RS05360;Dbxref=Genbank:WP_011407778.1;Name=WP_011407778.1;Ontology_term=GO:0009228,GO:0004789;gbkey=CDS;gene=thiE;go_function=thiamine-phosphate diphosphorylase activity|0004789||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112972.1;locus_tag=LLC55_RS05360;product=thiamine phosphate synthase;protein_id=WP_011407778.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1117515 1117754 . + . ID=gene-LLC55_RS05365;Name=LLC55_RS05365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05365;old_locus_tag=LLC55_05365 NZ_CP086200.1 Protein Homology CDS 1117515 1117754 . + 0 ID=cds-WP_011257965.1;Parent=gene-LLC55_RS05365;Dbxref=Genbank:WP_011257965.1;Name=WP_011257965.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112973.1;locus_tag=LLC55_RS05365;product=rubredoxin;protein_id=WP_011257965.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1117804 1118685 . - . ID=gene-LLC55_RS05370;Name=LLC55_RS05370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05370;old_locus_tag=LLC55_05370 NZ_CP086200.1 Protein Homology CDS 1117804 1118685 . - 0 ID=cds-WP_011257966.1;Parent=gene-LLC55_RS05370;Dbxref=Genbank:WP_011257966.1;Name=WP_011257966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851075.1;locus_tag=LLC55_RS05370;product=SirB1 family protein;protein_id=WP_011257966.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1118835 1119284 . - . ID=gene-LLC55_RS05375;Name=LLC55_RS05375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05375;old_locus_tag=LLC55_05375 NZ_CP086200.1 Protein Homology CDS 1118835 1119284 . - 0 ID=cds-WP_011407780.1;Parent=gene-LLC55_RS05375;Dbxref=Genbank:WP_011407780.1;Name=WP_011407780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967674.1;locus_tag=LLC55_RS05375;product=DUF192 domain-containing protein;protein_id=WP_011407780.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1119435 1120082 . - . ID=gene-LLC55_RS05380;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=LLC55_RS05380;old_locus_tag=LLC55_05380 NZ_CP086200.1 Protein Homology CDS 1119435 1120082 . - 0 ID=cds-WP_011407781.1;Parent=gene-LLC55_RS05380;Dbxref=Genbank:WP_011407781.1;Name=WP_011407781.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiA;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994531.1;locus_tag=LLC55_RS05380;product=ribose-5-phosphate isomerase RpiA;protein_id=WP_011407781.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1120174 1120644 . - . ID=gene-LLC55_RS05385;Name=LLC55_RS05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05385;old_locus_tag=LLC55_05385 NZ_CP086200.1 Protein Homology CDS 1120174 1120644 . - 0 ID=cds-WP_011257969.1;Parent=gene-LLC55_RS05385;Dbxref=Genbank:WP_011257969.1;Name=WP_011257969.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812469.1;locus_tag=LLC55_RS05385;product=EVE domain-containing protein;protein_id=WP_011257969.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1120641 1121231 . - . ID=gene-LLC55_RS05390;Name=LLC55_RS05390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05390;old_locus_tag=LLC55_05390 NZ_CP086200.1 Protein Homology CDS 1120641 1121231 . - 0 ID=cds-WP_011407783.1;Parent=gene-LLC55_RS05390;Dbxref=Genbank:WP_011407783.1;Name=WP_011407783.1;Ontology_term=GO:0006730,GO:0030272;gbkey=CDS;go_function=5-formyltetrahydrofolate cyclo-ligase activity|0030272||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090970.1;locus_tag=LLC55_RS05390;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_011407783.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1121561 1121744 . - . ID=gene-LLC55_RS05395;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=LLC55_RS05395;old_locus_tag=LLC55_05395 NZ_CP086200.1 cmsearch ncRNA 1121561 1121744 . - . ID=rna-LLC55_RS05395;Parent=gene-LLC55_RS05395;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05395;product=6S RNA NZ_CP086200.1 cmsearch exon 1121561 1121744 . - . ID=exon-LLC55_RS05395-1;Parent=rna-LLC55_RS05395;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05395;product=6S RNA NZ_CP086200.1 RefSeq gene 1121840 1122139 . - . ID=gene-LLC55_RS05400;Name=LLC55_RS05400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05400;old_locus_tag=LLC55_05400 NZ_CP086200.1 Protein Homology CDS 1121840 1122139 . - 0 ID=cds-WP_011257971.1;Parent=gene-LLC55_RS05400;Dbxref=Genbank:WP_011257971.1;Name=WP_011257971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300828.1;locus_tag=LLC55_RS05400;product=cell division protein ZapA;protein_id=WP_011257971.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1122136 1122357 . - . ID=gene-LLC55_RS05405;Name=LLC55_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05405;old_locus_tag=LLC55_05405 NZ_CP086200.1 Protein Homology CDS 1122136 1122357 . - 0 ID=cds-WP_011407784.1;Parent=gene-LLC55_RS05405;Dbxref=Genbank:WP_011407784.1;Name=WP_011407784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812462.1;locus_tag=LLC55_RS05405;product=TIGR02449 family protein;protein_id=WP_011407784.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1122593 1123135 . + . ID=gene-LLC55_RS05410;Name=LLC55_RS05410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05410;old_locus_tag=LLC55_05410 NZ_CP086200.1 Protein Homology CDS 1122593 1123135 . + 0 ID=cds-WP_011407785.1;Parent=gene-LLC55_RS05410;Dbxref=Genbank:WP_011407785.1;Name=WP_011407785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156855.1;locus_tag=LLC55_RS05410;product=YecA family protein;protein_id=WP_011407785.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1123146 1124486 . + . ID=gene-LLC55_RS05415;Name=LLC55_RS05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05415;old_locus_tag=LLC55_05415 NZ_CP086200.1 Protein Homology CDS 1123146 1124486 . + 0 ID=cds-WP_011257974.1;Parent=gene-LLC55_RS05415;Dbxref=Genbank:WP_011257974.1;Name=WP_011257974.1;Ontology_term=GO:0030145,GO:0070006;gbkey=CDS;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364488.1;locus_tag=LLC55_RS05415;product=aminopeptidase P N-terminal domain-containing protein;protein_id=WP_011257974.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1124671 1125072 . - . ID=gene-LLC55_RS05420;Name=LLC55_RS05420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05420;old_locus_tag=LLC55_05420;pseudo=true NZ_CP086200.1 Protein Homology CDS 1124671 1125072 . - 0 ID=cds-LLC55_RS05420;Parent=gene-LLC55_RS05420;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508836.1;locus_tag=LLC55_RS05420;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1125004 1125162 . + . ID=gene-LLC55_RS05425;Name=LLC55_RS05425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05425;old_locus_tag=LLC55_05425 NZ_CP086200.1 GeneMarkS-2+ CDS 1125004 1125162 . + 0 ID=cds-WP_162013040.1;Parent=gene-LLC55_RS05425;Dbxref=Genbank:WP_162013040.1;Name=WP_162013040.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS05425;product=hypothetical protein;protein_id=WP_162013040.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1125194 1125957 . - . ID=gene-LLC55_RS05430;Name=LLC55_RS05430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05430;old_locus_tag=LLC55_05430 NZ_CP086200.1 Protein Homology CDS 1125642 1125957 . - 0 ID=cds-WP_228329691.1;Parent=gene-LLC55_RS05430;Dbxref=Genbank:WP_228329691.1;Name=WP_228329691.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS05430;product=IS5 family transposase;protein_id=WP_228329691.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1125194 1125642 . - 2 ID=cds-WP_228329691.1;Parent=gene-LLC55_RS05430;Dbxref=Genbank:WP_228329691.1;Name=WP_228329691.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS05430;product=IS5 family transposase;protein_id=WP_228329691.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1126055 1126131 . + . ID=gene-LLC55_RS05435;Name=LLC55_RS05435;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS05435;old_locus_tag=LLC55_05435 NZ_CP086200.1 cmsearch ncRNA 1126055 1126131 . + . ID=rna-LLC55_RS05435;Parent=gene-LLC55_RS05435;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05435;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1126055 1126131 . + . ID=exon-LLC55_RS05435-1;Parent=rna-LLC55_RS05435;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05435;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1126190 1127515 . - . ID=gene-LLC55_RS05440;Name=pepQ;gbkey=Gene;gene=pepQ;gene_biotype=protein_coding;locus_tag=LLC55_RS05440;old_locus_tag=LLC55_05440 NZ_CP086200.1 Protein Homology CDS 1126190 1127515 . - 0 ID=cds-WP_011257975.1;Parent=gene-LLC55_RS05440;Dbxref=Genbank:WP_011257975.1;Name=WP_011257975.1;gbkey=CDS;gene=pepQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926900.1;locus_tag=LLC55_RS05440;product=Xaa-Pro dipeptidase;protein_id=WP_011257975.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1127714 1128061 . - . ID=gene-LLC55_RS05445;Name=LLC55_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05445;old_locus_tag=LLC55_05445 NZ_CP086200.1 Protein Homology CDS 1127714 1128061 . - 0 ID=cds-WP_011257976.1;Parent=gene-LLC55_RS05445;Dbxref=Genbank:WP_011257976.1;Name=WP_011257976.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156859.1;locus_tag=LLC55_RS05445;product=PilZ domain-containing protein;protein_id=WP_011257976.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1128058 1130466 . - . ID=gene-LLC55_RS05450;Name=LLC55_RS05450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05450;old_locus_tag=LLC55_05450 NZ_CP086200.1 Protein Homology CDS 1128058 1130466 . - 0 ID=cds-WP_011407789.1;Parent=gene-LLC55_RS05450;Dbxref=Genbank:WP_011407789.1;Name=WP_011407789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407789.1;locus_tag=LLC55_RS05450;product=DUF1631 domain-containing protein;protein_id=WP_011407789.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1130645 1131802 . - . ID=gene-LLC55_RS05455;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=LLC55_RS05455;old_locus_tag=LLC55_05455 NZ_CP086200.1 Protein Homology CDS 1130645 1131802 . - 0 ID=cds-WP_011257978.1;Parent=gene-LLC55_RS05455;Dbxref=Genbank:WP_011257978.1;Name=WP_011257978.1;Ontology_term=GO:0006779,GO:0051989;gbkey=CDS;gene=hemW;go_function=coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504451.1;locus_tag=LLC55_RS05455;product=radical SAM family heme chaperone HemW;protein_id=WP_011257978.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1131818 1132417 . - . ID=gene-LLC55_RS05460;Name=rdgB;gbkey=Gene;gene=rdgB;gene_biotype=protein_coding;locus_tag=LLC55_RS05460;old_locus_tag=LLC55_05460 NZ_CP086200.1 Protein Homology CDS 1131818 1132417 . - 0 ID=cds-WP_011257979.1;Parent=gene-LLC55_RS05460;Dbxref=Genbank:WP_011257979.1;Name=WP_011257979.1;Ontology_term=GO:0006281,GO:0016462;gbkey=CDS;gene=rdgB;go_function=pyrophosphatase activity|0016462||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162718.1;locus_tag=LLC55_RS05460;product=RdgB/HAM1 family non-canonical purine NTP pyrophosphatase;protein_id=WP_011257979.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1132414 1132809 . - . ID=gene-LLC55_RS05465;Name=LLC55_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05465;old_locus_tag=LLC55_05465 NZ_CP086200.1 Protein Homology CDS 1132414 1132809 . - 0 ID=cds-WP_011257980.1;Parent=gene-LLC55_RS05465;Dbxref=Genbank:WP_011257980.1;Name=WP_011257980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156863.1;locus_tag=LLC55_RS05465;product=VOC family protein;protein_id=WP_011257980.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1132806 1133531 . - . ID=gene-LLC55_RS05470;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=LLC55_RS05470;old_locus_tag=LLC55_05470 NZ_CP086200.1 Protein Homology CDS 1132806 1133531 . - 0 ID=cds-WP_011257981.1;Parent=gene-LLC55_RS05470;Dbxref=Genbank:WP_011257981.1;Name=WP_011257981.1;Ontology_term=GO:0008033,GO:0004549;gbkey=CDS;gene=rph;go_function=tRNA-specific ribonuclease activity|0004549||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926909.1;locus_tag=LLC55_RS05470;product=ribonuclease PH;protein_id=WP_011257981.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1133641 1134501 . + . ID=gene-LLC55_RS05475;Name=LLC55_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05475;old_locus_tag=LLC55_05475 NZ_CP086200.1 Protein Homology CDS 1133641 1134501 . + 0 ID=cds-WP_011257982.1;Parent=gene-LLC55_RS05475;Dbxref=Genbank:WP_011257982.1;Name=WP_011257982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996763.1;locus_tag=LLC55_RS05475;product=YicC family protein;protein_id=WP_011257982.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1134618 1135229 . + . ID=gene-LLC55_RS05480;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=LLC55_RS05480;old_locus_tag=LLC55_05480 NZ_CP086200.1 Protein Homology CDS 1134618 1135229 . + 0 ID=cds-WP_011257983.1;Parent=gene-LLC55_RS05480;Dbxref=Genbank:WP_011257983.1;Name=WP_011257983.1;Ontology_term=GO:0015949,GO:0004385;gbkey=CDS;gene=gmk;go_function=guanylate kinase activity|0004385||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377105.1;locus_tag=LLC55_RS05480;product=guanylate kinase;protein_id=WP_011257983.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1135287 1135362 . + . ID=gene-LLC55_RS05485;Name=LLC55_RS05485;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS05485;old_locus_tag=LLC55_05485 NZ_CP086200.1 cmsearch ncRNA 1135287 1135362 . + . ID=rna-LLC55_RS05485;Parent=gene-LLC55_RS05485;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05485;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1135287 1135362 . + . ID=exon-LLC55_RS05485-1;Parent=rna-LLC55_RS05485;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05485;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1135410 1136208 . + . ID=gene-LLC55_RS05490;Name=LLC55_RS05490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05490;old_locus_tag=LLC55_05490 NZ_CP086200.1 Protein Homology CDS 1135410 1135681 . + 0 ID=cds-WP_099051298.1;Parent=gene-LLC55_RS05490;Dbxref=Genbank:WP_099051298.1;Name=WP_099051298.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS05490;product=IS5 family transposase;protein_id=WP_099051298.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1135680 1136208 . + 1 ID=cds-WP_099051298.1;Parent=gene-LLC55_RS05490;Dbxref=Genbank:WP_099051298.1;Name=WP_099051298.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS05490;product=IS5 family transposase;protein_id=WP_099051298.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1136356 1136655 . + . ID=gene-LLC55_RS05495;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=LLC55_RS05495;old_locus_tag=LLC55_05495 NZ_CP086200.1 Protein Homology CDS 1136356 1136655 . + 0 ID=cds-WP_011407791.1;Parent=gene-LLC55_RS05495;Dbxref=Genbank:WP_011407791.1;Name=WP_011407791.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoZ;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812428.1;locus_tag=LLC55_RS05495;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_011407791.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1136784 1138955 . + . ID=gene-LLC55_RS05500;Name=LLC55_RS05500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05500;old_locus_tag=LLC55_05500 NZ_CP086200.1 Protein Homology CDS 1136784 1138955 . + 0 ID=cds-WP_011257986.1;Parent=gene-LLC55_RS05500;Dbxref=Genbank:WP_011257986.1;Name=WP_011257986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269543.1;locus_tag=LLC55_RS05500;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_011257986.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1139035 1139415 . + . ID=gene-LLC55_RS05505;Name=LLC55_RS05505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05505;old_locus_tag=LLC55_05505 NZ_CP086200.1 Protein Homology CDS 1139035 1139415 . + 0 ID=cds-WP_011257987.1;Parent=gene-LLC55_RS05505;Dbxref=Genbank:WP_011257987.1;Name=WP_011257987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486159.1;locus_tag=LLC55_RS05505;product=RidA family protein;protein_id=WP_011257987.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1139436 1141589 . + . ID=gene-LLC55_RS05510;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=LLC55_RS05510;old_locus_tag=LLC55_05510 NZ_CP086200.1 Protein Homology CDS 1139436 1141589 . + 0 ID=cds-WP_069960167.1;Parent=gene-LLC55_RS05510;Dbxref=Genbank:WP_069960167.1;Name=WP_069960167.1;Ontology_term=GO:0006281,GO:0006310,GO:0003676,GO:0003678,GO:0005524;gbkey=CDS;gene=recG;go_function=nucleic acid binding|0003676||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161420.1;locus_tag=LLC55_RS05510;product=ATP-dependent DNA helicase RecG;protein_id=WP_069960167.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1141715 1142653 . + . ID=gene-LLC55_RS05515;Name=LLC55_RS05515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05515;old_locus_tag=LLC55_05515 NZ_CP086200.1 Protein Homology CDS 1141715 1142653 . + 0 ID=cds-WP_069959742.1;Parent=gene-LLC55_RS05515;Dbxref=Genbank:WP_069959742.1;Name=WP_069959742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169423.1;locus_tag=LLC55_RS05515;product=nucleoside hydrolase;protein_id=WP_069959742.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1142725 1142967 . + . ID=gene-LLC55_RS05520;Name=LLC55_RS05520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05520;old_locus_tag=LLC55_05520 NZ_CP086200.1 Protein Homology CDS 1142725 1142967 . + 0 ID=cds-WP_005911911.1;Parent=gene-LLC55_RS05520;Dbxref=Genbank:WP_005911911.1;Name=WP_005911911.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156869.1;locus_tag=LLC55_RS05520;product=type B 50S ribosomal protein L31;protein_id=WP_005911911.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1143181 1144470 . + . ID=gene-LLC55_RS05525;Name=LLC55_RS05525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05525;old_locus_tag=LLC55_05525 NZ_CP086200.1 Protein Homology CDS 1143181 1144470 . + 0 ID=cds-WP_011407793.1;Parent=gene-LLC55_RS05525;Dbxref=Genbank:WP_011407793.1;Name=WP_011407793.1;Ontology_term=GO:0046912;gbkey=CDS;go_function=acyltransferase activity%2C acyl groups converted into alkyl on transfer|0046912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156870.1;locus_tag=LLC55_RS05525;product=citrate synthase;protein_id=WP_011407793.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1144639 1145958 . - . ID=gene-LLC55_RS05530;Name=LLC55_RS05530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05530;old_locus_tag=LLC55_05530 NZ_CP086200.1 Protein Homology CDS 1144639 1145958 . - 0 ID=cds-WP_115801874.1;Parent=gene-LLC55_RS05530;Dbxref=Genbank:WP_115801874.1;Name=WP_115801874.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS05530;product=IS701-like element ISXo15 family transposase;protein_id=WP_115801874.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1146324 1146974 . - . ID=gene-LLC55_RS05535;Name=LLC55_RS05535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05535;old_locus_tag=LLC55_05535 NZ_CP086200.1 Protein Homology CDS 1146324 1146974 . - 0 ID=cds-WP_011407794.1;Parent=gene-LLC55_RS05535;Dbxref=Genbank:WP_011407794.1;Name=WP_011407794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407794.1;locus_tag=LLC55_RS05535;product=hypothetical protein;protein_id=WP_011407794.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1147284 1149713 . - . ID=gene-LLC55_RS05540;Name=LLC55_RS05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05540;old_locus_tag=LLC55_05540 NZ_CP086200.1 Protein Homology CDS 1147284 1149713 . - 0 ID=cds-WP_011257992.1;Parent=gene-LLC55_RS05540;Dbxref=Genbank:WP_011257992.1;Name=WP_011257992.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812411.1;locus_tag=LLC55_RS05540;product=penicillin-binding protein 1A;protein_id=WP_011257992.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1149905 1150987 . + . ID=gene-LLC55_RS05545;Name=LLC55_RS05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05545;old_locus_tag=LLC55_05545 NZ_CP086200.1 Protein Homology CDS 1149905 1150987 . + 0 ID=cds-WP_027703769.1;Parent=gene-LLC55_RS05545;Dbxref=Genbank:WP_027703769.1;Name=WP_027703769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974443.1;locus_tag=LLC55_RS05545;product=pilus assembly protein PilM;protein_id=WP_027703769.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1150987 1151745 . + . ID=gene-LLC55_RS05550;Name=LLC55_RS05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05550;old_locus_tag=LLC55_05550 NZ_CP086200.1 Protein Homology CDS 1150987 1151745 . + 0 ID=cds-WP_011257994.1;Parent=gene-LLC55_RS05550;Dbxref=Genbank:WP_011257994.1;Name=WP_011257994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911890.1;locus_tag=LLC55_RS05550;product=PilN domain-containing protein;protein_id=WP_011257994.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1151742 1152407 . + . ID=gene-LLC55_RS05555;Name=LLC55_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05555;old_locus_tag=LLC55_05555 NZ_CP086200.1 Protein Homology CDS 1151742 1152407 . + 0 ID=cds-WP_011257995.1;Parent=gene-LLC55_RS05555;Dbxref=Genbank:WP_011257995.1;Name=WP_011257995.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903585.1;locus_tag=LLC55_RS05555;product=type 4a pilus biogenesis protein PilO;protein_id=WP_011257995.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1152404 1152937 . + . ID=gene-LLC55_RS05560;Name=LLC55_RS05560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05560;old_locus_tag=LLC55_05560 NZ_CP086200.1 Protein Homology CDS 1152404 1152937 . + 0 ID=cds-WP_011257996.1;Parent=gene-LLC55_RS05560;Dbxref=Genbank:WP_011257996.1;Name=WP_011257996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364547.1;locus_tag=LLC55_RS05560;product=pilus assembly protein PilP;protein_id=WP_011257996.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1152957 1154906 . + . ID=gene-LLC55_RS05565;Name=LLC55_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05565;old_locus_tag=LLC55_05565 NZ_CP086200.1 Protein Homology CDS 1152957 1154906 . + 0 ID=cds-WP_011407796.1;Parent=gene-LLC55_RS05565;Dbxref=Genbank:WP_011407796.1;Name=WP_011407796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038331.1;locus_tag=LLC55_RS05565;product=type IV pilus secretin PilQ family protein;protein_id=WP_011407796.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1154977 1155775 . - . ID=gene-LLC55_RS05570;Name=LLC55_RS05570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05570;old_locus_tag=LLC55_05570 NZ_CP086200.1 Protein Homology CDS 1155504 1155775 . - 0 ID=cds-WP_228329675.1-2;Parent=gene-LLC55_RS05570;Dbxref=Genbank:WP_228329675.1;Name=WP_228329675.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS05570;product=IS5 family transposase;protein_id=WP_228329675.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1154977 1155505 . - 1 ID=cds-WP_228329675.1-2;Parent=gene-LLC55_RS05570;Dbxref=Genbank:WP_228329675.1;Name=WP_228329675.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS05570;product=IS5 family transposase;protein_id=WP_228329675.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1155918 1157153 . + . ID=gene-LLC55_RS05575;Name=LLC55_RS05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05575;old_locus_tag=LLC55_05575 NZ_CP086200.1 Protein Homology CDS 1155918 1157153 . + 0 ID=cds-WP_011257854.1;Parent=gene-LLC55_RS05575;Dbxref=Genbank:WP_011257854.1;Name=WP_011257854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS05575;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011257854.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1157231 1158258 . - . ID=gene-LLC55_RS05580;Name=LLC55_RS05580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05580;old_locus_tag=LLC55_05580;partial=true;pseudo=true;start_range=.,1157231 NZ_CP086200.1 Protein Homology CDS 1157231 1158258 . - 0 ID=cds-LLC55_RS05580;Parent=gene-LLC55_RS05580;Note=programmed frameshift%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409030.1;locus_tag=LLC55_RS05580;partial=true;product=IS630 family transposase;pseudo=true;start_range=.,1157231;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1158284 1158559 . - . ID=gene-LLC55_RS05585;Name=LLC55_RS05585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05585;old_locus_tag=LLC55_05585;partial=true;pseudo=true;start_range=.,1158284 NZ_CP086200.1 Protein Homology CDS 1158284 1158559 . - 0 ID=cds-LLC55_RS05585;Parent=gene-LLC55_RS05585;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS05585;partial=true;product=transposase;pseudo=true;start_range=.,1158284;transl_table=11 NZ_CP086200.1 RefSeq gene 1158881 1159900 . + . ID=gene-LLC55_RS05590;Name=LLC55_RS05590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05590;old_locus_tag=LLC55_05590 NZ_CP086200.1 Protein Homology CDS 1158881 1159900 . + 0 ID=cds-WP_069963832.1;Parent=gene-LLC55_RS05590;Dbxref=Genbank:WP_069963832.1;Name=WP_069963832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166368.1;locus_tag=LLC55_RS05590;product=MoxR family ATPase;protein_id=WP_069963832.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1159921 1160883 . + . ID=gene-LLC55_RS05595;Name=LLC55_RS05595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05595;old_locus_tag=LLC55_05595 NZ_CP086200.1 Protein Homology CDS 1159921 1160883 . + 0 ID=cds-WP_069959745.1;Parent=gene-LLC55_RS05595;Dbxref=Genbank:WP_069959745.1;Name=WP_069959745.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161784.1;locus_tag=LLC55_RS05595;product=DUF58 domain-containing protein;protein_id=WP_069959745.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1160886 1161347 . + . ID=gene-LLC55_RS05600;Name=LLC55_RS05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05600;old_locus_tag=LLC55_05600 NZ_CP086200.1 Protein Homology CDS 1160886 1161347 . + 0 ID=cds-WP_011407801.1;Parent=gene-LLC55_RS05600;Dbxref=Genbank:WP_011407801.1;Name=WP_011407801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486191.1;locus_tag=LLC55_RS05600;product=DUF4381 domain-containing protein;protein_id=WP_011407801.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1161344 1162351 . + . ID=gene-LLC55_RS05605;Name=LLC55_RS05605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05605;old_locus_tag=LLC55_05605 NZ_CP086200.1 Protein Homology CDS 1161344 1162351 . + 0 ID=cds-WP_011407802.1;Parent=gene-LLC55_RS05605;Dbxref=Genbank:WP_011407802.1;Name=WP_011407802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995820.1;locus_tag=LLC55_RS05605;product=VWA domain-containing protein;protein_id=WP_011407802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1162348 1164150 . + . ID=gene-LLC55_RS05610;Name=LLC55_RS05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05610;old_locus_tag=LLC55_05610 NZ_CP086200.1 Protein Homology CDS 1162348 1164150 . + 0 ID=cds-WP_069959746.1;Parent=gene-LLC55_RS05610;Dbxref=Genbank:WP_069959746.1;Name=WP_069959746.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575858.1;locus_tag=LLC55_RS05610;product=VWA domain-containing protein;protein_id=WP_069959746.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1164147 1165904 . + . ID=gene-LLC55_RS05615;Name=LLC55_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05615;old_locus_tag=LLC55_05615 NZ_CP086200.1 Protein Homology CDS 1164147 1165904 . + 0 ID=cds-WP_011407804.1;Parent=gene-LLC55_RS05615;Dbxref=Genbank:WP_011407804.1;Name=WP_011407804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407804.1;locus_tag=LLC55_RS05615;product=BatD family protein;protein_id=WP_011407804.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1165956 1166032 . + . ID=gene-LLC55_RS05620;Name=LLC55_RS05620;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS05620;old_locus_tag=LLC55_05620 NZ_CP086200.1 cmsearch ncRNA 1165956 1166032 . + . ID=rna-LLC55_RS05620;Parent=gene-LLC55_RS05620;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05620;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1165956 1166032 . + . ID=exon-LLC55_RS05620-1;Parent=rna-LLC55_RS05620;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS05620;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1166200 1166517 . + . ID=gene-LLC55_RS05625;Name=LLC55_RS05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05625;old_locus_tag=LLC55_05625 NZ_CP086200.1 Protein Homology CDS 1166200 1166517 . + 0 ID=cds-WP_033013273.1;Parent=gene-LLC55_RS05625;Dbxref=Genbank:WP_033013273.1;Name=WP_033013273.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023812.2;locus_tag=LLC55_RS05625;product=DUF3658 domain-containing protein;protein_id=WP_033013273.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1166715 1167995 . + . ID=gene-LLC55_RS05630;Name=LLC55_RS05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05630;old_locus_tag=LLC55_05630 NZ_CP086200.1 Protein Homology CDS 1166715 1167995 . + 0 ID=cds-WP_103057328.1;Parent=gene-LLC55_RS05630;Dbxref=Genbank:WP_103057328.1;Name=WP_103057328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472649.1;locus_tag=LLC55_RS05630;product=dicarboxylate/amino acid:cation symporter;protein_id=WP_103057328.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1168215 1170215 . + . ID=gene-LLC55_RS05635;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=LLC55_RS05635;old_locus_tag=LLC55_05635 NZ_CP086200.1 Protein Homology CDS 1168215 1170215 . + 0 ID=cds-WP_011258007.1;Parent=gene-LLC55_RS05635;Dbxref=Genbank:WP_011258007.1;Name=WP_011258007.1;Ontology_term=GO:0006098,GO:0004802,GO:0005737;gbkey=CDS;gene=tkt;go_component=cytoplasm|0005737||IEA;go_function=transketolase activity|0004802||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348449.1;locus_tag=LLC55_RS05635;product=transketolase;protein_id=WP_011258007.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1170442 1170852 . + . ID=gene-LLC55_RS05640;Name=LLC55_RS05640;end_range=1170852,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05640;old_locus_tag=LLC55_05640;partial=true;pseudo=true;start_range=.,1170442 NZ_CP086200.1 Protein Homology CDS 1170442 1170852 . + 0 ID=cds-LLC55_RS05640;Parent=gene-LLC55_RS05640;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1170852,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911863.1;locus_tag=LLC55_RS05640;partial=true;product=outer membrane receptor protein;pseudo=true;start_range=.,1170442;transl_table=11 NZ_CP086200.1 RefSeq gene 1171034 1171750 . - . ID=gene-LLC55_RS05645;Name=LLC55_RS05645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05645;old_locus_tag=LLC55_05645 NZ_CP086200.1 Protein Homology CDS 1171034 1171750 . - 0 ID=cds-WP_011258009.1;Parent=gene-LLC55_RS05645;Dbxref=Genbank:WP_011258009.1;Name=WP_011258009.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156889.1;locus_tag=LLC55_RS05645;product=M23 family metallopeptidase;protein_id=WP_011258009.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1171753 1172682 . - . ID=gene-LLC55_RS05650;Name=LLC55_RS05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05650;old_locus_tag=LLC55_05650 NZ_CP086200.1 Protein Homology CDS 1171753 1172682 . - 0 ID=cds-WP_042464572.1;Parent=gene-LLC55_RS05650;Dbxref=Genbank:WP_042464572.1;Name=WP_042464572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156890.1;locus_tag=LLC55_RS05650;product=L%2CD-transpeptidase;protein_id=WP_042464572.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1173065 1175779 . - . ID=gene-LLC55_RS05655;Name=LLC55_RS05655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05655;old_locus_tag=LLC55_05655 NZ_CP086200.1 Protein Homology CDS 1173065 1175779 . - 0 ID=cds-WP_042464574.1;Parent=gene-LLC55_RS05655;Dbxref=Genbank:WP_042464574.1;Name=WP_042464574.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377055.1;locus_tag=LLC55_RS05655;product=TonB-dependent receptor;protein_id=WP_042464574.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1175899 1177074 . - . ID=gene-LLC55_RS05660;Name=LLC55_RS05660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05660;old_locus_tag=LLC55_05660 NZ_CP086200.1 Protein Homology CDS 1175899 1177074 . - 0 ID=cds-WP_011407810.1;Parent=gene-LLC55_RS05660;Dbxref=Genbank:WP_011407810.1;Name=WP_011407810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348442.1;locus_tag=LLC55_RS05660;product=phosphatidylinositol-specific phospholipase C1-like protein;protein_id=WP_011407810.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1177209 1179167 . - . ID=gene-LLC55_RS05665;Name=LLC55_RS05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05665;old_locus_tag=LLC55_05665 NZ_CP086200.1 Protein Homology CDS 1177209 1179167 . - 0 ID=cds-WP_042464577.1;Parent=gene-LLC55_RS05665;Dbxref=Genbank:WP_042464577.1;Name=WP_042464577.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504414.1;locus_tag=LLC55_RS05665;product=acetyl-CoA hydrolase;protein_id=WP_042464577.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1179343 1179990 . + . ID=gene-LLC55_RS05670;Name=LLC55_RS05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05670;old_locus_tag=LLC55_05670 NZ_CP086200.1 Protein Homology CDS 1179343 1179990 . + 0 ID=cds-WP_069960293.1;Parent=gene-LLC55_RS05670;Dbxref=Genbank:WP_069960293.1;Name=WP_069960293.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156894.1;locus_tag=LLC55_RS05670;product=thermostable hemolysin;protein_id=WP_069960293.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1179987 1181486 . + . ID=gene-LLC55_RS05675;Name=LLC55_RS05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05675;old_locus_tag=LLC55_05675 NZ_CP086200.1 Protein Homology CDS 1179987 1181486 . + 0 ID=cds-WP_011407813.1;Parent=gene-LLC55_RS05675;Dbxref=Genbank:WP_011407813.1;Name=WP_011407813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156895.1;locus_tag=LLC55_RS05675;product=AMP-binding protein;protein_id=WP_011407813.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1181483 1182157 . + . ID=gene-LLC55_RS05680;Name=LLC55_RS05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05680;old_locus_tag=LLC55_05680 NZ_CP086200.1 Protein Homology CDS 1181483 1182157 . + 0 ID=cds-WP_011407814.1;Parent=gene-LLC55_RS05680;Dbxref=Genbank:WP_011407814.1;Name=WP_011407814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407814.1;locus_tag=LLC55_RS05680;product=iron-containing redox enzyme family protein;protein_id=WP_011407814.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1182157 1182996 . + . ID=gene-LLC55_RS05685;Name=LLC55_RS05685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05685;old_locus_tag=LLC55_05685 NZ_CP086200.1 Protein Homology CDS 1182157 1182996 . + 0 ID=cds-WP_011407815.1;Parent=gene-LLC55_RS05685;Dbxref=Genbank:WP_011407815.1;Name=WP_011407815.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160090.1;locus_tag=LLC55_RS05685;product=SDR family oxidoreductase;protein_id=WP_011407815.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1182977 1183633 . + . ID=gene-LLC55_RS05690;Name=LLC55_RS05690;end_range=1183633,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05690;old_locus_tag=LLC55_05690;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1182977 1183633 . + 0 ID=cds-LLC55_RS05690;Parent=gene-LLC55_RS05690;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1183633,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156898.1;locus_tag=LLC55_RS05690;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1183663 1184361 . + . ID=gene-LLC55_RS05695;Name=LLC55_RS05695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05695;old_locus_tag=LLC55_05695 NZ_CP086200.1 Protein Homology CDS 1183663 1184361 . + 0 ID=cds-WP_011407818.1;Parent=gene-LLC55_RS05695;Dbxref=Genbank:WP_011407818.1;Name=WP_011407818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407818.1;locus_tag=LLC55_RS05695;product=response regulator transcription factor;protein_id=WP_011407818.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1184379 1185740 . + . ID=gene-LLC55_RS05700;Name=LLC55_RS05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05700;old_locus_tag=LLC55_05700 NZ_CP086200.1 Protein Homology CDS 1184379 1185740 . + 0 ID=cds-WP_041182938.1;Parent=gene-LLC55_RS05700;Dbxref=Genbank:WP_041182938.1;Name=WP_041182938.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258021.1;locus_tag=LLC55_RS05700;product=ATP-binding protein;protein_id=WP_041182938.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1185840 1186205 . + . ID=gene-LLC55_RS05705;Name=LLC55_RS05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05705;old_locus_tag=LLC55_05705 NZ_CP086200.1 Protein Homology CDS 1185840 1186205 . + 0 ID=cds-WP_011407820.1;Parent=gene-LLC55_RS05705;Dbxref=Genbank:WP_011407820.1;Name=WP_011407820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156901.1;locus_tag=LLC55_RS05705;product=BlaI/MecI/CopY family transcriptional regulator;protein_id=WP_011407820.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1186195 1187511 . + . ID=gene-LLC55_RS05710;Name=LLC55_RS05710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05710;old_locus_tag=LLC55_05710 NZ_CP086200.1 Protein Homology CDS 1186195 1187511 . + 0 ID=cds-WP_069959749.1;Parent=gene-LLC55_RS05710;Dbxref=Genbank:WP_069959749.1;Name=WP_069959749.1;Ontology_term=GO:0006810,GO:0015291;gbkey=CDS;go_function=secondary active transmembrane transporter activity|0015291||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090943.1;locus_tag=LLC55_RS05710;product=TonB family protein;protein_id=WP_069959749.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1187508 1188092 . + . ID=gene-LLC55_RS05715;Name=LLC55_RS05715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05715;old_locus_tag=LLC55_05715 NZ_CP086200.1 Protein Homology CDS 1187508 1188092 . + 0 ID=cds-WP_011407822.1;Parent=gene-LLC55_RS05715;Dbxref=Genbank:WP_011407822.1;Name=WP_011407822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156903.1;locus_tag=LLC55_RS05715;product=hypothetical protein;protein_id=WP_011407822.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1188435 1189049 . - . ID=gene-LLC55_RS05720;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=LLC55_RS05720;old_locus_tag=LLC55_05720 NZ_CP086200.1 Protein Homology CDS 1188435 1189049 . - 0 ID=cds-WP_011407823.1;Parent=gene-LLC55_RS05720;Dbxref=Genbank:WP_011407823.1;Name=WP_011407823.1;Ontology_term=GO:0015689,GO:0005524,GO:0015412,GO:0009898,GO:0055052;gbkey=CDS;gene=modC;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ABC-type molybdate transporter activity|0015412||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038308.1;locus_tag=LLC55_RS05720;product=molybdenum ABC transporter ATP-binding protein;protein_id=WP_011407823.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1189049 1189735 . - . ID=gene-LLC55_RS05725;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;locus_tag=LLC55_RS05725;old_locus_tag=LLC55_05725 NZ_CP086200.1 Protein Homology CDS 1189049 1189735 . - 0 ID=cds-WP_027703578.1;Parent=gene-LLC55_RS05725;Dbxref=Genbank:WP_027703578.1;Name=WP_027703578.1;Ontology_term=GO:0015689,GO:0015098,GO:0016020;gbkey=CDS;gene=modB;go_component=membrane|0016020||IEA;go_function=molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116572.1;locus_tag=LLC55_RS05725;product=molybdate ABC transporter permease subunit;protein_id=WP_027703578.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1189752 1190528 . - . ID=gene-LLC55_RS05730;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=LLC55_RS05730;old_locus_tag=LLC55_05730 NZ_CP086200.1 Protein Homology CDS 1189752 1190528 . - 0 ID=cds-WP_069959750.1;Parent=gene-LLC55_RS05730;Dbxref=Genbank:WP_069959750.1;Name=WP_069959750.1;Ontology_term=GO:0015689;gbkey=CDS;gene=modA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005933035.1;locus_tag=LLC55_RS05730;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_069959750.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1190599 1191429 . - . ID=gene-LLC55_RS05735;Name=LLC55_RS05735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05735;old_locus_tag=LLC55_05735 NZ_CP086200.1 Protein Homology CDS 1190599 1191429 . - 0 ID=cds-WP_011258028.1;Parent=gene-LLC55_RS05735;Dbxref=Genbank:WP_011258028.1;Name=WP_011258028.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364600.1;locus_tag=LLC55_RS05735;product=MBL fold metallo-hydrolase;protein_id=WP_011258028.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1191443 1192330 . - . ID=gene-LLC55_RS05740;Name=LLC55_RS05740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05740;old_locus_tag=LLC55_05740 NZ_CP086200.1 Protein Homology CDS 1191443 1192330 . - 0 ID=cds-WP_228329735.1;Parent=gene-LLC55_RS05740;Dbxref=Genbank:WP_228329735.1;Name=WP_228329735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169326.1;locus_tag=LLC55_RS05740;product=S1/P1 nuclease;protein_id=WP_228329735.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1192565 1193883 . + . ID=gene-LLC55_RS05745;Name=LLC55_RS05745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05745;old_locus_tag=LLC55_05745;pseudo=true NZ_CP086200.1 Protein Homology CDS 1192565 1193883 . + 0 ID=cds-LLC55_RS05745;Parent=gene-LLC55_RS05745;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS05745;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1193967 1194559 . - . ID=gene-LLC55_RS05750;Name=LLC55_RS05750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05750;old_locus_tag=LLC55_05750;pseudo=true NZ_CP086200.1 Protein Homology CDS 1193967 1194559 . - 0 ID=cds-LLC55_RS05750;Parent=gene-LLC55_RS05750;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156909.1;locus_tag=LLC55_RS05750;product=outer membrane beta-barrel protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1194678 1195265 . - . ID=gene-LLC55_RS05755;Name=LLC55_RS05755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05755;old_locus_tag=LLC55_05755;pseudo=true NZ_CP086200.1 Protein Homology CDS 1194678 1195265 . - 0 ID=cds-LLC55_RS05755;Parent=gene-LLC55_RS05755;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972397.1;locus_tag=LLC55_RS05755;product=OmpW family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1195290 1195430 . + . ID=gene-LLC55_RS05760;Name=LLC55_RS05760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05760;old_locus_tag=LLC55_05760 NZ_CP086200.1 GeneMarkS-2+ CDS 1195290 1195430 . + 0 ID=cds-WP_153296750.1;Parent=gene-LLC55_RS05760;Dbxref=Genbank:WP_153296750.1;Name=WP_153296750.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS05760;product=hypothetical protein;protein_id=WP_153296750.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1196087 1197088 . + . ID=gene-LLC55_RS05765;Name=gap;gbkey=Gene;gene=gap;gene_biotype=protein_coding;locus_tag=LLC55_RS05765;old_locus_tag=LLC55_05765 NZ_CP086200.1 Protein Homology CDS 1196087 1197088 . + 0 ID=cds-WP_011407830.1;Parent=gene-LLC55_RS05765;Dbxref=Genbank:WP_011407830.1;Name=WP_011407830.1;Ontology_term=GO:0006094,GO:0006096,GO:0019682;gbkey=CDS;gene=gap;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA,glyceraldehyde-3-phosphate metabolic process|0019682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300876.1;locus_tag=LLC55_RS05765;product=type I glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_011407830.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1197176 1197430 . - . ID=gene-LLC55_RS05770;Name=LLC55_RS05770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05770;old_locus_tag=LLC55_05770 NZ_CP086200.1 GeneMarkS-2+ CDS 1197176 1197430 . - 0 ID=cds-WP_228329692.1;Parent=gene-LLC55_RS05770;Dbxref=Genbank:WP_228329692.1;Name=WP_228329692.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS05770;product=hypothetical protein;protein_id=WP_228329692.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1197476 1198239 . + . ID=gene-LLC55_RS05775;Name=LLC55_RS05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05775;old_locus_tag=LLC55_05775 NZ_CP086200.1 Protein Homology CDS 1197476 1197791 . + 0 ID=cds-WP_109181945.1;Parent=gene-LLC55_RS05775;Dbxref=Genbank:WP_109181945.1;Name=WP_109181945.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS05775;product=IS5 family transposase;protein_id=WP_109181945.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1197791 1198239 . + 2 ID=cds-WP_109181945.1;Parent=gene-LLC55_RS05775;Dbxref=Genbank:WP_109181945.1;Name=WP_109181945.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS05775;product=IS5 family transposase;protein_id=WP_109181945.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1198328 1199293 . + . ID=gene-LLC55_RS05780;Name=LLC55_RS05780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05780;old_locus_tag=LLC55_05780 NZ_CP086200.1 Protein Homology CDS 1198328 1199293 . + 0 ID=cds-WP_115801876.1;Parent=gene-LLC55_RS05780;Dbxref=Genbank:WP_115801876.1;Name=WP_115801876.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS05780;product=IS1595-like element ISXo5 family transposase;protein_id=WP_115801876.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1199403 1200722 . - . ID=gene-LLC55_RS05785;Name=LLC55_RS05785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05785;old_locus_tag=LLC55_05785 NZ_CP086200.1 Protein Homology CDS 1199403 1200722 . - 0 ID=cds-WP_027704076.1;Parent=gene-LLC55_RS05785;Dbxref=Genbank:WP_027704076.1;Name=WP_027704076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237347.1;locus_tag=LLC55_RS05785;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_027704076.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1201185 1201862 . - . ID=gene-LLC55_RS05790;Name=LLC55_RS05790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05790;old_locus_tag=LLC55_05790 NZ_CP086200.1 Protein Homology CDS 1201185 1201862 . - 0 ID=cds-WP_011407833.1;Parent=gene-LLC55_RS05790;Dbxref=Genbank:WP_011407833.1;Name=WP_011407833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169438.1;locus_tag=LLC55_RS05790;product=response regulator transcription factor;protein_id=WP_011407833.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1201942 1202331 . - . ID=gene-LLC55_RS05795;Name=LLC55_RS05795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05795;old_locus_tag=LLC55_05795 NZ_CP086200.1 Protein Homology CDS 1201942 1202331 . - 0 ID=cds-WP_027704066.1;Parent=gene-LLC55_RS05795;Dbxref=Genbank:WP_027704066.1;Name=WP_027704066.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116874.1;locus_tag=LLC55_RS05795;product=hypothetical protein;protein_id=WP_027704066.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1202545 1203462 . - . ID=gene-LLC55_RS05800;Name=rimK;gbkey=Gene;gene=rimK;gene_biotype=protein_coding;locus_tag=LLC55_RS05800;old_locus_tag=LLC55_05800 NZ_CP086200.1 Protein Homology CDS 1202545 1203462 . - 0 ID=cds-WP_012445833.1;Parent=gene-LLC55_RS05800;Dbxref=Genbank:WP_012445833.1;Name=WP_012445833.1;Ontology_term=GO:0036211,GO:0005524,GO:0046872;gbkey=CDS;gene=rimK;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504335.1;locus_tag=LLC55_RS05800;product=30S ribosomal protein S6--L-glutamate ligase;protein_id=WP_012445833.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1203866 1204850 . - . ID=gene-LLC55_RS05805;Name=LLC55_RS05805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05805;old_locus_tag=LLC55_05805 NZ_CP086200.1 Protein Homology CDS 1204215 1204850 . - 0 ID=cds-WP_113081219.1;Parent=gene-LLC55_RS05805;Dbxref=Genbank:WP_113081219.1;Name=WP_113081219.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_022557821.1;locus_tag=LLC55_RS05805;product=IS5 family transposase;protein_id=WP_113081219.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1203866 1204213 . - 0 ID=cds-WP_113081219.1;Parent=gene-LLC55_RS05805;Dbxref=Genbank:WP_113081219.1;Name=WP_113081219.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_022557821.1;locus_tag=LLC55_RS05805;product=IS5 family transposase;protein_id=WP_113081219.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1205026 1207113 . - . ID=gene-LLC55_RS05810;Name=LLC55_RS05810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05810;old_locus_tag=LLC55_05810 NZ_CP086200.1 Protein Homology CDS 1205026 1207113 . - 0 ID=cds-WP_011407838.1;Parent=gene-LLC55_RS05810;Dbxref=Genbank:WP_011407838.1;Name=WP_011407838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303233.1;locus_tag=LLC55_RS05810;product=bifunctional DedA family/phosphatase PAP2 family protein;protein_id=WP_011407838.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1207265 1207924 . + . ID=gene-LLC55_RS05815;Name=LLC55_RS05815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05815;old_locus_tag=LLC55_05815 NZ_CP086200.1 Protein Homology CDS 1207265 1207924 . + 0 ID=cds-WP_011407839.1;Parent=gene-LLC55_RS05815;Dbxref=Genbank:WP_011407839.1;Name=WP_011407839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303234.1;locus_tag=LLC55_RS05815;product=serine/threonine-protein kinase;protein_id=WP_011407839.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1208005 1208803 . + . ID=gene-LLC55_RS05820;Name=LLC55_RS05820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05820;old_locus_tag=LLC55_05820 NZ_CP086200.1 Protein Homology CDS 1208005 1208276 . + 0 ID=cds-WP_094187758.1;Parent=gene-LLC55_RS05820;Dbxref=Genbank:WP_094187758.1;Name=WP_094187758.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS05820;product=IS5 family transposase;protein_id=WP_094187758.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1208275 1208803 . + 1 ID=cds-WP_094187758.1;Parent=gene-LLC55_RS05820;Dbxref=Genbank:WP_094187758.1;Name=WP_094187758.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS05820;product=IS5 family transposase;protein_id=WP_094187758.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1208825 1209004 . + . ID=gene-LLC55_RS05825;Name=LLC55_RS05825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05825;old_locus_tag=LLC55_05825 NZ_CP086200.1 Protein Homology CDS 1208825 1209004 . + 0 ID=cds-WP_011407841.1;Parent=gene-LLC55_RS05825;Dbxref=Genbank:WP_011407841.1;Name=WP_011407841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301580.1;locus_tag=LLC55_RS05825;product=hypothetical protein;protein_id=WP_011407841.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1209023 1209820 . + . ID=gene-LLC55_RS05830;Name=LLC55_RS05830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05830;old_locus_tag=LLC55_05830;pseudo=true NZ_CP086200.1 Protein Homology CDS 1209023 1209820 . + 0 ID=cds-LLC55_RS05830;Parent=gene-LLC55_RS05830;Note=internal stop;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024293.2;locus_tag=LLC55_RS05830;product=YiiG family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1210064 1210936 . - . ID=gene-LLC55_RS05835;Name=LLC55_RS05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05835;old_locus_tag=LLC55_05835 NZ_CP086200.1 Protein Homology CDS 1210064 1210936 . - 0 ID=cds-WP_011258047.1;Parent=gene-LLC55_RS05835;Dbxref=Genbank:WP_011258047.1;Name=WP_011258047.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911973.1;locus_tag=LLC55_RS05835;product=ion transporter;protein_id=WP_011258047.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1211009 1212235 . + . ID=gene-LLC55_RS05840;Name=LLC55_RS05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05840;old_locus_tag=LLC55_05840 NZ_CP086200.1 Protein Homology CDS 1211009 1212235 . + 0 ID=cds-WP_011258048.1;Parent=gene-LLC55_RS05840;Dbxref=Genbank:WP_011258048.1;Name=WP_011258048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258048.1;locus_tag=LLC55_RS05840;product=acetylornithine transaminase;protein_id=WP_011258048.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1212480 1213097 . - . ID=gene-LLC55_RS05845;Name=LLC55_RS05845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05845;old_locus_tag=LLC55_05845 NZ_CP086200.1 Protein Homology CDS 1212480 1213097 . - 0 ID=cds-WP_011407842.1;Parent=gene-LLC55_RS05845;Dbxref=Genbank:WP_011407842.1;Name=WP_011407842.1;Ontology_term=GO:0008152,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577886.1;locus_tag=LLC55_RS05845;product=HAD-IA family hydrolase;protein_id=WP_011407842.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1213429 1213557 . - . ID=gene-LLC55_RS23440;Name=LLC55_RS23440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23440 NZ_CP086200.1 GeneMarkS-2+ CDS 1213429 1213557 . - 0 ID=cds-WP_256364565.1;Parent=gene-LLC55_RS23440;Dbxref=Genbank:WP_256364565.1;Name=WP_256364565.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23440;product=hypothetical protein;protein_id=WP_256364565.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1213640 1214564 . + . ID=gene-LLC55_RS05850;Name=LLC55_RS05850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05850;old_locus_tag=LLC55_05850;partial=true;pseudo=true;start_range=.,1213640 NZ_CP086200.1 Protein Homology CDS 1213640 1214564 . + 0 ID=cds-LLC55_RS05850;Parent=gene-LLC55_RS05850;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463573.1;locus_tag=LLC55_RS05850;partial=true;product=TonB-dependent receptor;pseudo=true;start_range=.,1213640;transl_table=11 NZ_CP086200.1 RefSeq gene 1214634 1216241 . + . ID=gene-LLC55_RS05855;Name=LLC55_RS05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05855;old_locus_tag=LLC55_05855 NZ_CP086200.1 Protein Homology CDS 1214634 1216241 . + 0 ID=cds-WP_042464589.1;Parent=gene-LLC55_RS05855;Dbxref=Genbank:WP_042464589.1;Name=WP_042464589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851068.1;locus_tag=LLC55_RS05855;product=flavin monoamine oxidase family protein;protein_id=WP_042464589.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1216238 1216663 . + . ID=gene-LLC55_RS05860;Name=LLC55_RS05860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05860;old_locus_tag=LLC55_05860 NZ_CP086200.1 Protein Homology CDS 1216238 1216663 . + 0 ID=cds-WP_011258050.1;Parent=gene-LLC55_RS05860;Dbxref=Genbank:WP_011258050.1;Name=WP_011258050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504474.1;locus_tag=LLC55_RS05860;product=cytochrome c;protein_id=WP_011258050.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1216688 1217191 . + . ID=gene-LLC55_RS05865;Name=LLC55_RS05865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05865;old_locus_tag=LLC55_05865 NZ_CP086200.1 Protein Homology CDS 1216688 1217191 . + 0 ID=cds-WP_011407846.1;Parent=gene-LLC55_RS05865;Dbxref=Genbank:WP_011407846.1;Name=WP_011407846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348483.1;locus_tag=LLC55_RS05865;product=RidA family protein;protein_id=WP_011407846.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1217222 1218422 . + . ID=gene-LLC55_RS05870;Name=LLC55_RS05870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05870;old_locus_tag=LLC55_05870;pseudo=true NZ_CP086200.1 Protein Homology CDS 1217222 1218422 . + 0 ID=cds-LLC55_RS05870;Parent=gene-LLC55_RS05870;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926874.1;locus_tag=LLC55_RS05870;product=pyridoxal phosphate-dependent aminotransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1218634 1219083 . + . ID=gene-LLC55_RS05875;Name=azu;gbkey=Gene;gene=azu;gene_biotype=protein_coding;locus_tag=LLC55_RS05875;old_locus_tag=LLC55_05875 NZ_CP086200.1 Protein Homology CDS 1218634 1219083 . + 0 ID=cds-WP_011407850.1;Parent=gene-LLC55_RS05875;Dbxref=Genbank:WP_011407850.1;Name=WP_011407850.1;Ontology_term=GO:0005507,GO:0009055;gbkey=CDS;gene=azu;go_function=copper ion binding|0005507||IEA,electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851071.1;locus_tag=LLC55_RS05875;product=azurin;protein_id=WP_011407850.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1219162 1221952 . - . ID=gene-LLC55_RS05880;Name=LLC55_RS05880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05880;old_locus_tag=LLC55_05880;pseudo=true NZ_CP086200.1 Protein Homology CDS 1219162 1221952 . - 0 ID=cds-LLC55_RS05880;Parent=gene-LLC55_RS05880;Note=frameshifted%3B internal stop;Ontology_term=GO:0006355;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851072.1;locus_tag=LLC55_RS05880;product=LuxR C-terminal-related transcriptional regulator;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1222480 1223769 . - . ID=gene-LLC55_RS05885;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=LLC55_RS05885;old_locus_tag=LLC55_05885 NZ_CP086200.1 Protein Homology CDS 1222480 1223769 . - 0 ID=cds-WP_027703881.1;Parent=gene-LLC55_RS05885;Dbxref=Genbank:WP_027703881.1;Name=WP_027703881.1;Ontology_term=GO:0006779,GO:0042286,GO:0005737;gbkey=CDS;gene=hemL;go_component=cytoplasm|0005737||IEA;go_function=glutamate-1-semialdehyde 2%2C1-aminomutase activity|0042286||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052264.1;locus_tag=LLC55_RS05885;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_027703881.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1224055 1227234 . + . ID=gene-LLC55_RS05890;Name=LLC55_RS05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05890;old_locus_tag=LLC55_05890 NZ_CP086200.1 Protein Homology CDS 1224055 1227234 . + 0 ID=cds-WP_011407854.1;Parent=gene-LLC55_RS05890;Dbxref=Genbank:WP_011407854.1;Name=WP_011407854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169557.1;locus_tag=LLC55_RS05890;product=TonB-dependent receptor;protein_id=WP_011407854.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1227731 1228588 . - . ID=gene-LLC55_RS05895;Name=LLC55_RS05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05895;old_locus_tag=LLC55_05895 NZ_CP086200.1 Protein Homology CDS 1227731 1228588 . - 0 ID=cds-WP_228329693.1;Parent=gene-LLC55_RS05895;Dbxref=Genbank:WP_228329693.1;Name=WP_228329693.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258055.1;locus_tag=LLC55_RS05895;product=IS30 family transposase;protein_id=WP_228329693.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1228682 1229590 . - . ID=gene-LLC55_RS05900;Name=LLC55_RS05900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05900;old_locus_tag=LLC55_05900;partial=true;pseudo=true;start_range=.,1228682 NZ_CP086200.1 Protein Homology CDS 1228682 1229590 . - 0 ID=cds-LLC55_RS05900;Parent=gene-LLC55_RS05900;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612052.1;locus_tag=LLC55_RS05900;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,1228682;transl_table=11 NZ_CP086200.1 RefSeq gene 1229685 1232693 . - . ID=gene-LLC55_RS05905;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS05905;old_locus_tag=LLC55_05905 NZ_CP086200.1 Protein Homology CDS 1229685 1232693 . - 0 ID=cds-WP_228329694.1;Parent=gene-LLC55_RS05905;Dbxref=Genbank:WP_228329694.1;Name=WP_228329694.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS05905;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_228329694.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1232917 1233216 . - . ID=gene-LLC55_RS05910;Name=LLC55_RS05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05910;old_locus_tag=LLC55_05910 NZ_CP086200.1 Protein Homology CDS 1232917 1233216 . - 0 ID=cds-WP_011408491.1;Parent=gene-LLC55_RS05910;Dbxref=Genbank:WP_011408491.1;Name=WP_011408491.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408500.1;locus_tag=LLC55_RS05910;product=hypothetical protein;protein_id=WP_011408491.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1233220 1233414 . - . ID=gene-LLC55_RS05915;Name=LLC55_RS05915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05915;old_locus_tag=LLC55_05915 NZ_CP086200.1 GeneMarkS-2+ CDS 1233220 1233414 . - 0 ID=cds-WP_041182100.1;Parent=gene-LLC55_RS05915;Dbxref=Genbank:WP_041182100.1;Name=WP_041182100.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS05915;product=hypothetical protein;protein_id=WP_041182100.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1233683 1236994 . - . ID=gene-LLC55_RS05920;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS05920;old_locus_tag=LLC55_05920 NZ_CP086200.1 Protein Homology CDS 1233683 1236994 . - 0 ID=cds-WP_069959754.1;Parent=gene-LLC55_RS05920;Dbxref=Genbank:WP_069959754.1;Name=WP_069959754.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS05920;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_069959754.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1237218 1237517 . - . ID=gene-LLC55_RS05925;Name=LLC55_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05925;old_locus_tag=LLC55_05925 NZ_CP086200.1 Protein Homology CDS 1237218 1237517 . - 0 ID=cds-WP_041182759.1;Parent=gene-LLC55_RS05925;Dbxref=Genbank:WP_041182759.1;Name=WP_041182759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450394.1;locus_tag=LLC55_RS05925;product=hypothetical protein;protein_id=WP_041182759.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1237521 1237715 . - . ID=gene-LLC55_RS05930;Name=LLC55_RS05930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05930;old_locus_tag=LLC55_05930 NZ_CP086200.1 GeneMarkS-2+ CDS 1237521 1237715 . - 0 ID=cds-WP_228329771.1;Parent=gene-LLC55_RS05930;Dbxref=Genbank:WP_228329771.1;Name=WP_228329771.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS05930;product=hypothetical protein;protein_id=WP_228329771.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1237984 1242408 . - . ID=gene-LLC55_RS05935;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS05935;old_locus_tag=LLC55_05935 NZ_CP086200.1 Protein Homology CDS 1237984 1242408 . - 0 ID=cds-WP_208151342.1;Parent=gene-LLC55_RS05935;Dbxref=Genbank:WP_208151342.1;Name=WP_208151342.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445810.1;locus_tag=LLC55_RS05935;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_208151342.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1242632 1242931 . - . ID=gene-LLC55_RS05940;Name=LLC55_RS05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05940;old_locus_tag=LLC55_05940 NZ_CP086200.1 Protein Homology CDS 1242632 1242931 . - 0 ID=cds-WP_011408408.1;Parent=gene-LLC55_RS05940;Dbxref=Genbank:WP_011408408.1;Name=WP_011408408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408500.1;locus_tag=LLC55_RS05940;product=hypothetical protein;protein_id=WP_011408408.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1242935 1243129 . - . ID=gene-LLC55_RS05945;Name=LLC55_RS05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05945;old_locus_tag=LLC55_05945 NZ_CP086200.1 GeneMarkS-2+ CDS 1242935 1243129 . - 0 ID=cds-WP_011258059.1;Parent=gene-LLC55_RS05945;Dbxref=Genbank:WP_011258059.1;Name=WP_011258059.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS05945;product=hypothetical protein;protein_id=WP_011258059.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1243398 1247114 . - . ID=gene-LLC55_RS05950;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS05950;old_locus_tag=LLC55_05950 NZ_CP086200.1 Protein Homology CDS 1243398 1247114 . - 0 ID=cds-WP_208151341.1;Parent=gene-LLC55_RS05950;Dbxref=Genbank:WP_208151341.1;Name=WP_208151341.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS05950;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_208151341.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1247246 1247896 . + . ID=gene-LLC55_RS05955;Name=LLC55_RS05955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05955;old_locus_tag=LLC55_05955;partial=true;pseudo=true;start_range=.,1247246 NZ_CP086200.1 Protein Homology CDS 1247246 1247896 . + 0 ID=cds-LLC55_RS05955;Parent=gene-LLC55_RS05955;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS05955;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,1247246;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1247905 1248231 . + . ID=gene-LLC55_RS05960;Name=LLC55_RS05960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS05960;old_locus_tag=LLC55_05960;partial=true;pseudo=true;start_range=.,1247905 NZ_CP086200.1 Protein Homology CDS 1247905 1248231 . + 0 ID=cds-LLC55_RS05960;Parent=gene-LLC55_RS05960;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409196.1;locus_tag=LLC55_RS05960;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1247905;transl_table=11 NZ_CP086200.1 RefSeq gene 1248586 1249650 . - . ID=gene-LLC55_RS05965;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=LLC55_RS05965;old_locus_tag=LLC55_05965 NZ_CP086200.1 Protein Homology CDS 1248586 1249650 . - 0 ID=cds-WP_011258066.1;Parent=gene-LLC55_RS05965;Dbxref=Genbank:WP_011258066.1;Name=WP_011258066.1;Ontology_term=GO:0006779,GO:0004853;gbkey=CDS;gene=hemE;go_function=uroporphyrinogen decarboxylase activity|0004853||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407863.1;locus_tag=LLC55_RS05965;product=uroporphyrinogen decarboxylase;protein_id=WP_011258066.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1249665 1249916 . - . ID=gene-LLC55_RS05970;Name=LLC55_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05970;old_locus_tag=LLC55_05970 NZ_CP086200.1 Protein Homology CDS 1249665 1249916 . - 0 ID=cds-WP_011407864.1;Parent=gene-LLC55_RS05970;Dbxref=Genbank:WP_011407864.1;Name=WP_011407864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407864.1;locus_tag=LLC55_RS05970;product=WGR domain-containing protein;protein_id=WP_011407864.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1250218 1251330 . - . ID=gene-LLC55_RS05975;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=LLC55_RS05975;old_locus_tag=LLC55_05975 NZ_CP086200.1 Protein Homology CDS 1250218 1251330 . - 0 ID=cds-WP_011258068.1;Parent=gene-LLC55_RS05975;Dbxref=Genbank:WP_011258068.1;Name=WP_011258068.1;Ontology_term=GO:0009423,GO:0003856;gbkey=CDS;gene=aroB;go_function=3-dehydroquinate synthase activity|0003856||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090724.1;locus_tag=LLC55_RS05975;product=3-dehydroquinate synthase;protein_id=WP_011258068.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1251327 1251869 . - . ID=gene-LLC55_RS05980;Name=LLC55_RS05980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05980;old_locus_tag=LLC55_05980 NZ_CP086200.1 Protein Homology CDS 1251327 1251869 . - 0 ID=cds-WP_011258069.1;Parent=gene-LLC55_RS05980;Dbxref=Genbank:WP_011258069.1;Name=WP_011258069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917545.1;locus_tag=LLC55_RS05980;product=shikimate kinase;protein_id=WP_011258069.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1252036 1252635 . + . ID=gene-LLC55_RS05985;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;locus_tag=LLC55_RS05985;old_locus_tag=LLC55_05985 NZ_CP086200.1 Protein Homology CDS 1252036 1252635 . + 0 ID=cds-WP_011258070.1;Parent=gene-LLC55_RS05985;Dbxref=Genbank:WP_011258070.1;Name=WP_011258070.1;Ontology_term=GO:0008615,GO:0004733,GO:0010181;gbkey=CDS;gene=pdxH;go_function=pyridoxamine-phosphate oxidase activity|0004733||IEA,FMN binding|0010181||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381128.1;locus_tag=LLC55_RS05985;product=pyridoxamine 5'-phosphate oxidase;protein_id=WP_011258070.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1252750 1253232 . + . ID=gene-LLC55_RS05990;Name=LLC55_RS05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05990;old_locus_tag=LLC55_05990 NZ_CP086200.1 Protein Homology CDS 1252750 1253232 . + 0 ID=cds-WP_011407866.1;Parent=gene-LLC55_RS05990;Dbxref=Genbank:WP_011407866.1;Name=WP_011407866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157839.1;locus_tag=LLC55_RS05990;product=YjfI family protein;protein_id=WP_011407866.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1253245 1254018 . + . ID=gene-LLC55_RS05995;Name=LLC55_RS05995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS05995;old_locus_tag=LLC55_05995 NZ_CP086200.1 Protein Homology CDS 1253245 1254018 . + 0 ID=cds-WP_011258072.1;Parent=gene-LLC55_RS05995;Dbxref=Genbank:WP_011258072.1;Name=WP_011258072.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302374.1;locus_tag=LLC55_RS05995;product=PspA/IM30 family protein;protein_id=WP_011258072.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1254044 1255126 . + . ID=gene-LLC55_RS06000;Name=LLC55_RS06000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06000;old_locus_tag=LLC55_06000 NZ_CP086200.1 Protein Homology CDS 1254044 1255126 . + 0 ID=cds-WP_011258073.1;Parent=gene-LLC55_RS06000;Dbxref=Genbank:WP_011258073.1;Name=WP_011258073.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971371.1;locus_tag=LLC55_RS06000;product=ion channel;protein_id=WP_011258073.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1255123 1255800 . + . ID=gene-LLC55_RS06005;Name=LLC55_RS06005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06005;old_locus_tag=LLC55_06005 NZ_CP086200.1 Protein Homology CDS 1255123 1255800 . + 0 ID=cds-WP_027703609.1;Parent=gene-LLC55_RS06005;Dbxref=Genbank:WP_027703609.1;Name=WP_027703609.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237428.1;locus_tag=LLC55_RS06005;product=YjfK family protein;protein_id=WP_027703609.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1255838 1256242 . + . ID=gene-LLC55_RS06010;Name=LLC55_RS06010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06010;old_locus_tag=LLC55_06010 NZ_CP086200.1 Protein Homology CDS 1255838 1256242 . + 0 ID=cds-WP_011407869.1;Parent=gene-LLC55_RS06010;Dbxref=Genbank:WP_011407869.1;Name=WP_011407869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807970.1;locus_tag=LLC55_RS06010;product=DUF350 domain-containing protein;protein_id=WP_011407869.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1256255 1256827 . + . ID=gene-LLC55_RS06015;Name=LLC55_RS06015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06015;old_locus_tag=LLC55_06015 NZ_CP086200.1 Protein Homology CDS 1256255 1256827 . + 0 ID=cds-WP_075242230.1;Parent=gene-LLC55_RS06015;Dbxref=Genbank:WP_075242230.1;Name=WP_075242230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965639.1;locus_tag=LLC55_RS06015;product=DUF1190 domain-containing protein;protein_id=WP_075242230.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1256829 1257995 . + . ID=gene-LLC55_RS06020;Name=LLC55_RS06020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06020;old_locus_tag=LLC55_06020 NZ_CP086200.1 Protein Homology CDS 1256829 1257995 . + 0 ID=cds-WP_011258077.1;Parent=gene-LLC55_RS06020;Dbxref=Genbank:WP_011258077.1;Name=WP_011258077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171699.1;locus_tag=LLC55_RS06020;product=glutathionylspermidine synthase family protein;protein_id=WP_011258077.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1258462 1259724 . - . ID=gene-LLC55_RS06025;Name=LLC55_RS06025;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06025;old_locus_tag=LLC55_06025;pseudo=true NZ_CP086200.1 Protein Homology CDS 1258462 1259724 . - 0 ID=cds-LLC55_RS06025;Parent=gene-LLC55_RS06025;Note=frameshifted%3B internal stop;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269592.1;locus_tag=LLC55_RS06025;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1259639 1259959 . + . ID=gene-LLC55_RS06030;Name=LLC55_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06030;old_locus_tag=LLC55_06030 NZ_CP086200.1 GeneMarkS-2+ CDS 1259639 1259959 . + 0 ID=cds-WP_027703607.1;Parent=gene-LLC55_RS06030;Dbxref=Genbank:WP_027703607.1;Name=WP_027703607.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS06030;product=hypothetical protein;protein_id=WP_027703607.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1259975 1260421 . + . ID=gene-LLC55_RS06035;Name=soxR;gbkey=Gene;gene=soxR;gene_biotype=protein_coding;locus_tag=LLC55_RS06035;old_locus_tag=LLC55_06035 NZ_CP086200.1 Protein Homology CDS 1259975 1260421 . + 0 ID=cds-WP_075242229.1;Parent=gene-LLC55_RS06035;Dbxref=Genbank:WP_075242229.1;Name=WP_075242229.1;Ontology_term=GO:0006355,GO:0006979,GO:0003677,GO:0003700,GO:0051537;gbkey=CDS;gene=soxR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965644.1;locus_tag=LLC55_RS06035;product=redox-sensitive transcriptional activator SoxR;protein_id=WP_075242229.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1260641 1262647 . + . ID=gene-LLC55_RS06040;Name=LLC55_RS06040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06040;old_locus_tag=LLC55_06040 NZ_CP086200.1 Protein Homology CDS 1260641 1262647 . + 0 ID=cds-WP_075242228.1;Parent=gene-LLC55_RS06040;Dbxref=Genbank:WP_075242228.1;Name=WP_075242228.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851403.1;locus_tag=LLC55_RS06040;product=M1 family metallopeptidase;protein_id=WP_075242228.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1263694 1266852 . + . ID=gene-LLC55_RS06045;Name=LLC55_RS06045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06045;old_locus_tag=LLC55_06045 NZ_CP086200.1 Protein Homology CDS 1263694 1266852 . + 0 ID=cds-WP_011407874.1;Parent=gene-LLC55_RS06045;Dbxref=Genbank:WP_011407874.1;Name=WP_011407874.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489548.1;locus_tag=LLC55_RS06045;product=TonB-dependent receptor;protein_id=WP_011407874.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1267184 1267936 . + . ID=gene-LLC55_RS06050;Name=LLC55_RS06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06050;old_locus_tag=LLC55_06050 NZ_CP086200.1 Protein Homology CDS 1267184 1267936 . + 0 ID=cds-WP_011407875.1;Parent=gene-LLC55_RS06050;Dbxref=Genbank:WP_011407875.1;Name=WP_011407875.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381156.1;locus_tag=LLC55_RS06050;product=SapC family protein;protein_id=WP_011407875.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1267947 1268993 . + . ID=gene-LLC55_RS06055;Name=LLC55_RS06055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06055;old_locus_tag=LLC55_06055 NZ_CP086200.1 Protein Homology CDS 1267947 1268993 . + 0 ID=cds-WP_011407876.1;Parent=gene-LLC55_RS06055;Dbxref=Genbank:WP_011407876.1;Name=WP_011407876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445799.1;locus_tag=LLC55_RS06055;product=cupin-like domain-containing protein;protein_id=WP_011407876.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1269034 1270551 . + . ID=gene-LLC55_RS06060;Name=LLC55_RS06060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06060;old_locus_tag=LLC55_06060 NZ_CP086200.1 Protein Homology CDS 1269034 1270551 . + 0 ID=cds-WP_011258084.1;Parent=gene-LLC55_RS06060;Dbxref=Genbank:WP_011258084.1;Name=WP_011258084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173993.1;locus_tag=LLC55_RS06060;product=tryptophan 7-halogenase;protein_id=WP_011258084.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1270589 1271593 . - . ID=gene-LLC55_RS06065;Name=LLC55_RS06065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06065;old_locus_tag=LLC55_06065 NZ_CP086200.1 Protein Homology CDS 1270589 1271593 . - 0 ID=cds-WP_011258085.1;Parent=gene-LLC55_RS06065;Dbxref=Genbank:WP_011258085.1;Name=WP_011258085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116322.1;locus_tag=LLC55_RS06065;product=MBL fold metallo-hydrolase;protein_id=WP_011258085.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1271738 1272136 . - . ID=gene-LLC55_RS06070;Name=LLC55_RS06070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06070;old_locus_tag=LLC55_06070 NZ_CP086200.1 Protein Homology CDS 1271738 1272136 . - 0 ID=cds-WP_011407877.1;Parent=gene-LLC55_RS06070;Dbxref=Genbank:WP_011407877.1;Name=WP_011407877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165040.1;locus_tag=LLC55_RS06070;product=hypothetical protein;protein_id=WP_011407877.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1272699 1274096 . - . ID=gene-LLC55_RS06075;Name=LLC55_RS06075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06075;old_locus_tag=LLC55_06075 NZ_CP086200.1 Protein Homology CDS 1272699 1274096 . - 0 ID=cds-WP_011407879.1;Parent=gene-LLC55_RS06075;Dbxref=Genbank:WP_011407879.1;Name=WP_011407879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489555.1;locus_tag=LLC55_RS06075;product=trypsin-like peptidase domain-containing protein;protein_id=WP_011407879.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1274551 1275933 . - . ID=gene-LLC55_RS06080;Name=LLC55_RS06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06080;old_locus_tag=LLC55_06080 NZ_CP086200.1 Protein Homology CDS 1274551 1275933 . - 0 ID=cds-WP_014502476.1;Parent=gene-LLC55_RS06080;Dbxref=Genbank:WP_014502476.1;Name=WP_014502476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157822.1;locus_tag=LLC55_RS06080;product=APC family permease;protein_id=WP_014502476.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1276126 1276890 . + . ID=gene-LLC55_RS06085;Name=LLC55_RS06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06085;old_locus_tag=LLC55_06085 NZ_CP086200.1 Protein Homology CDS 1276126 1276890 . + 0 ID=cds-WP_024710940.1;Parent=gene-LLC55_RS06085;Dbxref=Genbank:WP_024710940.1;Name=WP_024710940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964311.1;locus_tag=LLC55_RS06085;product=LuxR family transcriptional regulator;protein_id=WP_024710940.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1277204 1278145 . + . ID=gene-LLC55_RS06090;Name=LLC55_RS06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06090;old_locus_tag=LLC55_06090 NZ_CP086200.1 Protein Homology CDS 1277204 1278145 . + 0 ID=cds-WP_044750723.1;Parent=gene-LLC55_RS06090;Dbxref=Genbank:WP_044750723.1;Name=WP_044750723.1;Ontology_term=GO:0006508,GO:0008233;gbkey=CDS;go_function=peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437774.1;locus_tag=LLC55_RS06090;product=proline iminopeptidase-family hydrolase;protein_id=WP_044750723.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1278730 1278805 . + . ID=gene-LLC55_RS06095;Name=LLC55_RS06095;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06095;old_locus_tag=LLC55_06095 NZ_CP086200.1 cmsearch ncRNA 1278730 1278805 . + . ID=rna-LLC55_RS06095;Parent=gene-LLC55_RS06095;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06095;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1278730 1278805 . + . ID=exon-LLC55_RS06095-1;Parent=rna-LLC55_RS06095;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06095;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1278901 1280289 . + . ID=gene-LLC55_RS06100;Name=LLC55_RS06100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06100;old_locus_tag=LLC55_06100 NZ_CP086200.1 Protein Homology CDS 1278901 1280289 . + 0 ID=cds-WP_011258091.1;Parent=gene-LLC55_RS06100;Dbxref=Genbank:WP_011258091.1;Name=WP_011258091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003491164.1;locus_tag=LLC55_RS06100;product=amino acid permease;protein_id=WP_011258091.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1280571 1280696 . + . ID=gene-LLC55_RS06105;Name=LLC55_RS06105;end_range=1280696,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06105;old_locus_tag=LLC55_06105;partial=true;pseudo=true;start_range=.,1280571 NZ_CP086200.1 Protein Homology CDS 1280571 1280696 . + 0 ID=cds-LLC55_RS06105;Parent=gene-LLC55_RS06105;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1280696,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158987.1;locus_tag=LLC55_RS06105;partial=true;product=peptidase;pseudo=true;start_range=.,1280571;transl_table=11 NZ_CP086200.1 RefSeq gene 1280711 1281946 . - . ID=gene-LLC55_RS06110;Name=LLC55_RS06110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06110;old_locus_tag=LLC55_06110 NZ_CP086200.1 Protein Homology CDS 1280711 1281946 . - 0 ID=cds-WP_069959761.1-2;Parent=gene-LLC55_RS06110;Dbxref=Genbank:WP_069959761.1;Name=WP_069959761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS06110;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_069959761.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1282333 1283733 . + . ID=gene-LLC55_RS06115;Name=LLC55_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06115;old_locus_tag=LLC55_06115 NZ_CP086200.1 Protein Homology CDS 1282333 1283733 . + 0 ID=cds-WP_069963835.1;Parent=gene-LLC55_RS06115;Dbxref=Genbank:WP_069963835.1;Name=WP_069963835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237439.1;locus_tag=LLC55_RS06115;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_069963835.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1283733 1284749 . + . ID=gene-LLC55_RS06120;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=LLC55_RS06120;old_locus_tag=LLC55_06120 NZ_CP086200.1 Protein Homology CDS 1283733 1284749 . + 0 ID=cds-WP_069963918.1;Parent=gene-LLC55_RS06120;Dbxref=Genbank:WP_069963918.1;Name=WP_069963918.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydB;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051953.1;locus_tag=LLC55_RS06120;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_069963918.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1284810 1285547 . - . ID=gene-LLC55_RS06125;Name=LLC55_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06125;old_locus_tag=LLC55_06125 NZ_CP086200.1 Protein Homology CDS 1284810 1285547 . - 0 ID=cds-WP_012445791.1;Parent=gene-LLC55_RS06125;Dbxref=Genbank:WP_012445791.1;Name=WP_012445791.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302425.1;locus_tag=LLC55_RS06125;product=prolyl oligopeptidase family serine peptidase;protein_id=WP_012445791.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1285764 1287125 . - . ID=gene-LLC55_RS06130;Name=mgtE;gbkey=Gene;gene=mgtE;gene_biotype=protein_coding;locus_tag=LLC55_RS06130;old_locus_tag=LLC55_06130 NZ_CP086200.1 Protein Homology CDS 1285764 1287125 . - 0 ID=cds-WP_011258096.1;Parent=gene-LLC55_RS06130;Dbxref=Genbank:WP_011258096.1;Name=WP_011258096.1;Ontology_term=GO:0015693,GO:0015095;gbkey=CDS;gene=mgtE;go_function=magnesium ion transmembrane transporter activity|0015095||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502484.1;locus_tag=LLC55_RS06130;product=magnesium transporter;protein_id=WP_011258096.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1287413 1289143 . - . ID=gene-LLC55_RS06135;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=LLC55_RS06135;old_locus_tag=LLC55_06135 NZ_CP086200.1 Protein Homology CDS 1287413 1289143 . - 0 ID=cds-WP_012445788.1;Parent=gene-LLC55_RS06135;Dbxref=Genbank:WP_012445788.1;Name=WP_012445788.1;Ontology_term=GO:0006808,GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=regulation of nitrogen utilization|0006808||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154796.1;locus_tag=LLC55_RS06135;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_012445788.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1289202 1289471 . - . ID=gene-LLC55_RS06140;Name=LLC55_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06140;old_locus_tag=LLC55_06140 NZ_CP086200.1 Protein Homology CDS 1289202 1289471 . - 0 ID=cds-WP_005913389.1;Parent=gene-LLC55_RS06140;Dbxref=Genbank:WP_005913389.1;Name=WP_005913389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237443.1;locus_tag=LLC55_RS06140;product=HPr family phosphocarrier protein;protein_id=WP_005913389.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1289464 1289856 . - . ID=gene-LLC55_RS06145;Name=LLC55_RS06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06145;old_locus_tag=LLC55_06145 NZ_CP086200.1 Protein Homology CDS 1289464 1289856 . - 0 ID=cds-WP_011258098.1;Parent=gene-LLC55_RS06145;Dbxref=Genbank:WP_011258098.1;Name=WP_011258098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154797.1;locus_tag=LLC55_RS06145;product=hypothetical protein;protein_id=WP_011258098.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1290383 1291255 . - . ID=gene-LLC55_RS06150;Name=rapZ;gbkey=Gene;gene=rapZ;gene_biotype=protein_coding;locus_tag=LLC55_RS06150;old_locus_tag=LLC55_06150 NZ_CP086200.1 Protein Homology CDS 1290383 1291255 . - 0 ID=cds-WP_011258099.1;Parent=gene-LLC55_RS06150;Dbxref=Genbank:WP_011258099.1;Name=WP_011258099.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rapZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993216.1;locus_tag=LLC55_RS06150;product=RNase adapter RapZ;protein_id=WP_011258099.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1291252 1292202 . - . ID=gene-LLC55_RS06155;Name=hprK;gbkey=Gene;gene=hprK;gene_biotype=protein_coding;locus_tag=LLC55_RS06155;old_locus_tag=LLC55_06155 NZ_CP086200.1 Protein Homology CDS 1291252 1292202 . - 0 ID=cds-WP_011258100.1;Parent=gene-LLC55_RS06155;Dbxref=Genbank:WP_011258100.1;Name=WP_011258100.1;Ontology_term=GO:0009401,GO:0004674,GO:0016791;gbkey=CDS;gene=hprK;go_function=protein serine/threonine kinase activity|0004674||IEA,phosphatase activity|0016791||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004425835.1;locus_tag=LLC55_RS06155;product=HPr(Ser) kinase/phosphatase;protein_id=WP_011258100.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1292199 1292657 . - . ID=gene-LLC55_RS06160;Name=LLC55_RS06160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06160;old_locus_tag=LLC55_06160 NZ_CP086200.1 Protein Homology CDS 1292199 1292657 . - 0 ID=cds-WP_011407887.1;Parent=gene-LLC55_RS06160;Dbxref=Genbank:WP_011407887.1;Name=WP_011407887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944116.1;locus_tag=LLC55_RS06160;product=PTS sugar transporter subunit IIA;protein_id=WP_011407887.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1292679 1292996 . - . ID=gene-LLC55_RS06165;Name=raiA;gbkey=Gene;gene=raiA;gene_biotype=protein_coding;locus_tag=LLC55_RS06165;old_locus_tag=LLC55_06165 NZ_CP086200.1 Protein Homology CDS 1292679 1292996 . - 0 ID=cds-WP_011258102.1;Parent=gene-LLC55_RS06165;Dbxref=Genbank:WP_011258102.1;Name=WP_011258102.1;Ontology_term=GO:0009386,GO:0045182,GO:0005840,GO:0022626;gbkey=CDS;gene=raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome|0022626||IEA;go_function=translation regulator activity|0045182||IEA;go_process=translational attenuation|0009386||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913379.1;locus_tag=LLC55_RS06165;product=ribosome-associated translation inhibitor RaiA;protein_id=WP_011258102.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1293084 1294481 . - . ID=gene-LLC55_RS06170;Name=LLC55_RS06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06170;old_locus_tag=LLC55_06170 NZ_CP086200.1 Protein Homology CDS 1293084 1294481 . - 0 ID=cds-WP_012445785.1;Parent=gene-LLC55_RS06170;Dbxref=Genbank:WP_012445785.1;Name=WP_012445785.1;Ontology_term=GO:0006352,GO:0001216,GO:0003677,GO:0016987;gbkey=CDS;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161722.1;locus_tag=LLC55_RS06170;product=RNA polymerase factor sigma-54;protein_id=WP_012445785.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1294564 1295283 . - . ID=gene-LLC55_RS06175;Name=lptB;gbkey=Gene;gene=lptB;gene_biotype=protein_coding;locus_tag=LLC55_RS06175;old_locus_tag=LLC55_06175 NZ_CP086200.1 Protein Homology CDS 1294564 1295283 . - 0 ID=cds-WP_011258104.1;Parent=gene-LLC55_RS06175;Dbxref=Genbank:WP_011258104.1;Name=WP_011258104.1;Ontology_term=GO:0015920,GO:0015221,GO:0042626,GO:0009898,GO:0043190;gbkey=CDS;gene=lptB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913374.1;locus_tag=LLC55_RS06175;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_011258104.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1295283 1295831 . - . ID=gene-LLC55_RS06180;Name=lptA;gbkey=Gene;gene=lptA;gene_biotype=protein_coding;locus_tag=LLC55_RS06180;old_locus_tag=LLC55_06180 NZ_CP086200.1 Protein Homology CDS 1295283 1295831 . - 0 ID=cds-WP_011258105.1;Parent=gene-LLC55_RS06180;Dbxref=Genbank:WP_011258105.1;Name=WP_011258105.1;Ontology_term=GO:0015920,GO:0001530,GO:0030288,GO:0043190;gbkey=CDS;gene=lptA;go_component=outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide binding|0001530||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090696.1;locus_tag=LLC55_RS06180;product=lipopolysaccharide transport periplasmic protein LptA;protein_id=WP_011258105.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1295809 1296384 . - . ID=gene-LLC55_RS06185;Name=lptC;gbkey=Gene;gene=lptC;gene_biotype=protein_coding;locus_tag=LLC55_RS06185;old_locus_tag=LLC55_06185 NZ_CP086200.1 Protein Homology CDS 1295809 1296384 . - 0 ID=cds-WP_011258106.1;Parent=gene-LLC55_RS06185;Dbxref=Genbank:WP_011258106.1;Name=WP_011258106.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptC;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301638.1;locus_tag=LLC55_RS06185;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_011258106.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1296381 1296929 . - . ID=gene-LLC55_RS06190;Name=LLC55_RS06190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06190;old_locus_tag=LLC55_06190 NZ_CP086200.1 Protein Homology CDS 1296381 1296929 . - 0 ID=cds-WP_011407889.1;Parent=gene-LLC55_RS06190;Dbxref=Genbank:WP_011407889.1;Name=WP_011407889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407889.1;locus_tag=LLC55_RS06190;product=HAD hydrolase family protein;protein_id=WP_011407889.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1296978 1297979 . - . ID=gene-LLC55_RS06195;Name=LLC55_RS06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06195;old_locus_tag=LLC55_06195 NZ_CP086200.1 Protein Homology CDS 1296978 1297979 . - 0 ID=cds-WP_011258108.1;Parent=gene-LLC55_RS06195;Dbxref=Genbank:WP_011258108.1;Name=WP_011258108.1;Ontology_term=GO:0005975,GO:0016853;gbkey=CDS;go_function=isomerase activity|0016853||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993233.1;locus_tag=LLC55_RS06195;product=KpsF/GutQ family sugar-phosphate isomerase;protein_id=WP_011258108.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1298034 1298261 . + . ID=gene-LLC55_RS06200;Name=LLC55_RS06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06200;old_locus_tag=LLC55_06200 NZ_CP086200.1 Protein Homology CDS 1298034 1298261 . + 0 ID=cds-WP_011258109.1;Parent=gene-LLC55_RS06200;Dbxref=Genbank:WP_011258109.1;Name=WP_011258109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016905061.1;locus_tag=LLC55_RS06200;product=BolA/IbaG family iron-sulfur metabolism protein;protein_id=WP_011258109.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1298500 1299774 . + . ID=gene-LLC55_RS06205;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=LLC55_RS06205;old_locus_tag=LLC55_06205 NZ_CP086200.1 Protein Homology CDS 1298500 1299774 . + 0 ID=cds-WP_011258110.1;Parent=gene-LLC55_RS06205;Dbxref=Genbank:WP_011258110.1;Name=WP_011258110.1;Ontology_term=GO:0009252,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437778.1;locus_tag=LLC55_RS06205;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_011258110.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1299771 1300094 . + . ID=gene-LLC55_RS06210;Name=LLC55_RS06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06210;old_locus_tag=LLC55_06210 NZ_CP086200.1 Protein Homology CDS 1299771 1300094 . + 0 ID=cds-WP_011258111.1;Parent=gene-LLC55_RS06210;Dbxref=Genbank:WP_011258111.1;Name=WP_011258111.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348142.1;locus_tag=LLC55_RS06210;product=hypothetical protein;protein_id=WP_011258111.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1300802 1302037 . + . ID=gene-LLC55_RS06215;Name=LLC55_RS06215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06215;old_locus_tag=LLC55_06215 NZ_CP086200.1 Protein Homology CDS 1300802 1302037 . + 0 ID=cds-WP_069959761.1-3;Parent=gene-LLC55_RS06215;Dbxref=Genbank:WP_069959761.1;Name=WP_069959761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS06215;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_069959761.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1302505 1303185 . - . ID=gene-LLC55_RS06220;Name=LLC55_RS06220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06220;old_locus_tag=LLC55_06220 NZ_CP086200.1 Protein Homology CDS 1302505 1303185 . - 0 ID=cds-WP_048483151.1;Parent=gene-LLC55_RS06220;Dbxref=Genbank:WP_048483151.1;Name=WP_048483151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502502.1;locus_tag=LLC55_RS06220;product=DUF3108 domain-containing protein;protein_id=WP_048483151.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1303189 1304016 . - . ID=gene-LLC55_RS06225;Name=LLC55_RS06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06225;old_locus_tag=LLC55_06225 NZ_CP086200.1 Protein Homology CDS 1303189 1304016 . - 0 ID=cds-WP_014502503.1;Parent=gene-LLC55_RS06225;Dbxref=Genbank:WP_014502503.1;Name=WP_014502503.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158355.1;locus_tag=LLC55_RS06225;product=DUF3108 domain-containing protein;protein_id=WP_014502503.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1304082 1304750 . - . ID=gene-LLC55_RS06230;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=LLC55_RS06230;old_locus_tag=LLC55_06230 NZ_CP086200.1 Protein Homology CDS 1304082 1304750 . - 0 ID=cds-WP_014502504.1;Parent=gene-LLC55_RS06230;Dbxref=Genbank:WP_014502504.1;Name=WP_014502504.1;Ontology_term=GO:0009152,GO:0004644;gbkey=CDS;gene=purN;go_function=phosphoribosylglycinamide formyltransferase activity|0004644||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258114.1;locus_tag=LLC55_RS06230;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_014502504.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1304737 1305354 . - . ID=gene-LLC55_RS06235;Name=LLC55_RS06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06235;old_locus_tag=LLC55_06235 NZ_CP086200.1 Protein Homology CDS 1304737 1305354 . - 0 ID=cds-WP_041183138.1;Parent=gene-LLC55_RS06235;Dbxref=Genbank:WP_041183138.1;Name=WP_041183138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157703.1;locus_tag=LLC55_RS06235;product=DUF2238 domain-containing protein;protein_id=WP_041183138.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1305377 1305838 . - . ID=gene-LLC55_RS06240;Name=LLC55_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06240;old_locus_tag=LLC55_06240 NZ_CP086200.1 Protein Homology CDS 1305377 1305838 . - 0 ID=cds-WP_014502506.1;Parent=gene-LLC55_RS06240;Dbxref=Genbank:WP_014502506.1;Name=WP_014502506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258116.1;locus_tag=LLC55_RS06240;product=hypothetical protein;protein_id=WP_014502506.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1305852 1306985 . - . ID=gene-LLC55_RS06245;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=LLC55_RS06245;old_locus_tag=LLC55_06245 NZ_CP086200.1 Protein Homology CDS 1305852 1306985 . - 0 ID=cds-WP_178383645.1;Parent=gene-LLC55_RS06245;Dbxref=Genbank:WP_178383645.1;Name=WP_178383645.1;Ontology_term=GO:0006189,GO:0009152,GO:0004641;gbkey=CDS;gene=purM;go_function=phosphoribosylformylglycinamidine cyclo-ligase activity|0004641||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850074.1;locus_tag=LLC55_RS06245;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_178383645.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1307008 1308120 . + . ID=gene-LLC55_RS06250;Name=LLC55_RS06250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06250;old_locus_tag=LLC55_06250 NZ_CP086200.1 Protein Homology CDS 1307008 1308120 . + 0 ID=cds-WP_047339642.1;Parent=gene-LLC55_RS06250;Dbxref=Genbank:WP_047339642.1;Name=WP_047339642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970596.1;locus_tag=LLC55_RS06250;product=DUF2066 domain-containing protein;protein_id=WP_047339642.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1308117 1309283 . + . ID=gene-LLC55_RS06255;Name=LLC55_RS06255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06255;old_locus_tag=LLC55_06255 NZ_CP086200.1 Protein Homology CDS 1308117 1309283 . + 0 ID=cds-WP_014502509.1;Parent=gene-LLC55_RS06255;Dbxref=Genbank:WP_014502509.1;Name=WP_014502509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157699.1;locus_tag=LLC55_RS06255;product=AI-2E family transporter;protein_id=WP_014502509.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1309280 1309981 . + . ID=gene-LLC55_RS06260;Name=hda;gbkey=Gene;gene=hda;gene_biotype=protein_coding;locus_tag=LLC55_RS06260;old_locus_tag=LLC55_06260 NZ_CP086200.1 Protein Homology CDS 1309280 1309981 . + 0 ID=cds-WP_014502510.1;Parent=gene-LLC55_RS06260;Dbxref=Genbank:WP_014502510.1;Name=WP_014502510.1;Ontology_term=GO:0032297,GO:0016818;gbkey=CDS;gene=hda;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=negative regulation of DNA-templated DNA replication initiation|0032297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369247.1;locus_tag=LLC55_RS06260;product=DnaA regulatory inactivator Hda;protein_id=WP_014502510.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1310148 1310858 . - . ID=gene-LLC55_RS06265;Name=LLC55_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06265;old_locus_tag=LLC55_06265 NZ_CP086200.1 Protein Homology CDS 1310148 1310858 . - 0 ID=cds-WP_011258121.1;Parent=gene-LLC55_RS06265;Dbxref=Genbank:WP_011258121.1;Name=WP_011258121.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369254.1;locus_tag=LLC55_RS06265;product=nucleotidyltransferase family protein;protein_id=WP_011258121.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1310855 1311874 . - . ID=gene-LLC55_RS06270;Name=LLC55_RS06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06270;old_locus_tag=LLC55_06270 NZ_CP086200.1 Protein Homology CDS 1310855 1311874 . - 0 ID=cds-WP_011407895.1;Parent=gene-LLC55_RS06270;Dbxref=Genbank:WP_011407895.1;Name=WP_011407895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116339.1;locus_tag=LLC55_RS06270;product=phosphotransferase;protein_id=WP_011407895.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1311932 1312204 . - . ID=gene-LLC55_RS06275;Name=LLC55_RS06275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06275;old_locus_tag=LLC55_06275 NZ_CP086200.1 Protein Homology CDS 1311932 1312204 . - 0 ID=cds-WP_011407896.1;Parent=gene-LLC55_RS06275;Dbxref=Genbank:WP_011407896.1;Name=WP_011407896.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157695.1;locus_tag=LLC55_RS06275;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_011407896.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1312429 1313486 . + . ID=gene-LLC55_RS06280;Name=LLC55_RS06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06280;old_locus_tag=LLC55_06280 NZ_CP086200.1 Protein Homology CDS 1312429 1312603 . + 0 ID=cds-WP_155296485.1;Parent=gene-LLC55_RS06280;Dbxref=Genbank:WP_155296485.1;Name=WP_155296485.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408472.1;locus_tag=LLC55_RS06280;product=IS630 family transposase;protein_id=WP_155296485.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1312603 1313486 . + 2 ID=cds-WP_155296485.1;Parent=gene-LLC55_RS06280;Dbxref=Genbank:WP_155296485.1;Name=WP_155296485.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408472.1;locus_tag=LLC55_RS06280;product=IS630 family transposase;protein_id=WP_155296485.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1313806 1315299 . - . ID=gene-LLC55_RS06285;Name=LLC55_RS06285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06285;old_locus_tag=LLC55_06285 NZ_CP086200.1 Protein Homology CDS 1313806 1315299 . - 0 ID=cds-WP_075242308.1;Parent=gene-LLC55_RS06285;Dbxref=Genbank:WP_075242308.1;Name=WP_075242308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051939.1;locus_tag=LLC55_RS06285;product=M20 family metallopeptidase;protein_id=WP_075242308.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1315424 1315831 . + . ID=gene-LLC55_RS06290;Name=LLC55_RS06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06290;old_locus_tag=LLC55_06290 NZ_CP086200.1 Protein Homology CDS 1315424 1315831 . + 0 ID=cds-WP_011258127.1;Parent=gene-LLC55_RS06290;Dbxref=Genbank:WP_011258127.1;Name=WP_011258127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157693.1;locus_tag=LLC55_RS06290;product=helix-hairpin-helix domain-containing protein;protein_id=WP_011258127.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1316370 1317608 . - . ID=gene-LLC55_RS06295;Name=LLC55_RS06295;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06295;old_locus_tag=LLC55_06295;pseudo=true NZ_CP086200.1 Protein Homology CDS 1316370 1317608 . - 0 ID=cds-LLC55_RS06295;Parent=gene-LLC55_RS06295;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_085938460.1;locus_tag=LLC55_RS06295;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 cmsearch sequence_feature 1317216 1317332 . - . ID=id-LLC55_RS06295;Dbxref=RFAM:RF01497;Note=AL1L pseudoknot;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06295;pseudo=true NZ_CP086200.1 RefSeq gene 1317543 1318652 . + . ID=gene-LLC55_RS06300;Name=LLC55_RS06300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06300;old_locus_tag=LLC55_06300 NZ_CP086200.1 Protein Homology CDS 1317543 1318652 . + 0 ID=cds-WP_133260518.1;Parent=gene-LLC55_RS06300;Dbxref=Genbank:WP_133260518.1;Name=WP_133260518.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017747.2;locus_tag=LLC55_RS06300;product=HutD family protein;protein_id=WP_133260518.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1318735 1319175 . - . ID=gene-LLC55_RS06305;Name=LLC55_RS06305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06305;old_locus_tag=LLC55_06305;partial=true;pseudo=true;start_range=.,1318735 NZ_CP086200.1 Protein Homology CDS 1318735 1319175 . - 0 ID=cds-LLC55_RS06305;Parent=gene-LLC55_RS06305;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS06305;partial=true;product=transposase;pseudo=true;start_range=.,1318735;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1319342 1320308 . + . ID=gene-LLC55_RS06310;Name=LLC55_RS06310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06310;old_locus_tag=LLC55_06310;pseudo=true NZ_CP086200.1 Protein Homology CDS 1319342 1320308 . + 0 ID=cds-LLC55_RS06310;Parent=gene-LLC55_RS06310;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS06310;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1320348 1320476 . - . ID=gene-LLC55_RS23445;Name=LLC55_RS23445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23445 NZ_CP086200.1 GeneMarkS-2+ CDS 1320348 1320476 . - 0 ID=cds-WP_256364564.1;Parent=gene-LLC55_RS23445;Dbxref=Genbank:WP_256364564.1;Name=WP_256364564.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23445;product=hypothetical protein;protein_id=WP_256364564.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1320469 1320618 . + . ID=gene-LLC55_RS06315;Name=LLC55_RS06315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06315;old_locus_tag=LLC55_06315;partial=true;pseudo=true;start_range=.,1320469 NZ_CP086200.1 Protein Homology CDS 1320469 1320618 . + 0 ID=cds-LLC55_RS06315;Parent=gene-LLC55_RS06315;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS06315;partial=true;product=transposase;pseudo=true;start_range=.,1320469;transl_table=11 NZ_CP086200.1 RefSeq gene 1320806 1322389 . - . ID=gene-LLC55_RS06320;Name=LLC55_RS06320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06320;old_locus_tag=LLC55_06320 NZ_CP086200.1 Protein Homology CDS 1320806 1322389 . - 0 ID=cds-WP_011258133.1;Parent=gene-LLC55_RS06320;Dbxref=Genbank:WP_011258133.1;Name=WP_011258133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304880.1;locus_tag=LLC55_RS06320;product=alpha-L-arabinofuranosidase;protein_id=WP_011258133.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1322637 1323686 . + . ID=gene-LLC55_RS06325;Name=LLC55_RS06325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06325;old_locus_tag=LLC55_06325 NZ_CP086200.1 Protein Homology CDS 1322637 1323686 . + 0 ID=cds-WP_027704032.1;Parent=gene-LLC55_RS06325;Dbxref=Genbank:WP_027704032.1;Name=WP_027704032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302956.1;locus_tag=LLC55_RS06325;product=galactose mutarotase;protein_id=WP_027704032.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1323974 1324765 . - . ID=gene-LLC55_RS06330;Name=ccsA;gbkey=Gene;gene=ccsA;gene_biotype=protein_coding;locus_tag=LLC55_RS06330;old_locus_tag=LLC55_06330 NZ_CP086200.1 Protein Homology CDS 1323974 1324765 . - 0 ID=cds-WP_011407903.1;Parent=gene-LLC55_RS06330;Dbxref=Genbank:WP_011407903.1;Name=WP_011407903.1;Ontology_term=GO:0017004,GO:0020037;gbkey=CDS;gene=ccsA;go_function=heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484236.1;locus_tag=LLC55_RS06330;product=cytochrome c biogenesis protein CcsA;protein_id=WP_011407903.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1324995 1325960 . + . ID=gene-LLC55_RS06335;Name=LLC55_RS06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06335;old_locus_tag=LLC55_06335 NZ_CP086200.1 Protein Homology CDS 1324995 1325960 . + 0 ID=cds-WP_109181891.1;Parent=gene-LLC55_RS06335;Dbxref=Genbank:WP_109181891.1;Name=WP_109181891.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS06335;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181891.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1326262 1327638 . + . ID=gene-LLC55_RS06340;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=LLC55_RS06340;old_locus_tag=LLC55_06340 NZ_CP086200.1 Protein Homology CDS 1326262 1327638 . + 0 ID=cds-WP_011407905.1;Parent=gene-LLC55_RS06340;Dbxref=Genbank:WP_011407905.1;Name=WP_011407905.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407905.1;locus_tag=LLC55_RS06340;product=signal recognition particle protein;protein_id=WP_011407905.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1329011 1329086 . + . ID=gene-LLC55_RS06345;Name=LLC55_RS06345;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06345;old_locus_tag=LLC55_06345 NZ_CP086200.1 cmsearch ncRNA 1329011 1329086 . + . ID=rna-LLC55_RS06345;Parent=gene-LLC55_RS06345;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06345;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1329011 1329086 . + . ID=exon-LLC55_RS06345-1;Parent=rna-LLC55_RS06345;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06345;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1329211 1330281 . + . ID=gene-LLC55_RS06350;Name=LLC55_RS06350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06350;old_locus_tag=LLC55_06350 NZ_CP086200.1 Protein Homology CDS 1329211 1330281 . + 0 ID=cds-WP_011407907.1;Parent=gene-LLC55_RS06350;Dbxref=Genbank:WP_011407907.1;Name=WP_011407907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484227.1;locus_tag=LLC55_RS06350;product=nitronate monooxygenase;protein_id=WP_011407907.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1330272 1331069 . + . ID=gene-LLC55_RS06355;Name=LLC55_RS06355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06355;old_locus_tag=LLC55_06355 NZ_CP086200.1 Protein Homology CDS 1330272 1331069 . + 0 ID=cds-WP_011407908.1;Parent=gene-LLC55_RS06355;Dbxref=Genbank:WP_011407908.1;Name=WP_011407908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301831.1;locus_tag=LLC55_RS06355;product=aminotransferase class IV family protein;protein_id=WP_011407908.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1331179 1331436 . + . ID=gene-LLC55_RS06360;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=LLC55_RS06360;old_locus_tag=LLC55_06360 NZ_CP086200.1 Protein Homology CDS 1331179 1331436 . + 0 ID=cds-WP_011258141.1;Parent=gene-LLC55_RS06360;Dbxref=Genbank:WP_011258141.1;Name=WP_011258141.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036396.1;locus_tag=LLC55_RS06360;product=30S ribosomal protein S16;protein_id=WP_011258141.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1331480 1331992 . + . ID=gene-LLC55_RS06365;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=LLC55_RS06365;old_locus_tag=LLC55_06365 NZ_CP086200.1 Protein Homology CDS 1331480 1331992 . + 0 ID=cds-WP_011407909.1;Parent=gene-LLC55_RS06365;Dbxref=Genbank:WP_011407909.1;Name=WP_011407909.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0003723;gbkey=CDS;gene=rimM;go_function=RNA binding|0003723||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407909.1;locus_tag=LLC55_RS06365;product=ribosome maturation factor RimM;protein_id=WP_011407909.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1332058 1332837 . + . ID=gene-LLC55_RS06370;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=LLC55_RS06370;old_locus_tag=LLC55_06370 NZ_CP086200.1 Protein Homology CDS 1332058 1332837 . + 0 ID=cds-WP_011407910.1;Parent=gene-LLC55_RS06370;Dbxref=Genbank:WP_011407910.1;Name=WP_011407910.1;Ontology_term=GO:0008033,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N(1))-methyltransferase activity|0052906||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407910.1;locus_tag=LLC55_RS06370;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_011407910.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1332961 1333368 . + . ID=gene-LLC55_RS06375;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=LLC55_RS06375;old_locus_tag=LLC55_06375 NZ_CP086200.1 Protein Homology CDS 1332961 1333368 . + 0 ID=cds-WP_005989873.1;Parent=gene-LLC55_RS06375;Dbxref=Genbank:WP_005989873.1;Name=WP_005989873.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003470862.1;locus_tag=LLC55_RS06375;product=50S ribosomal protein L19;protein_id=WP_005989873.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1333760 1333836 . - . ID=gene-LLC55_RS06380;Name=LLC55_RS06380;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06380;old_locus_tag=LLC55_06380 NZ_CP086200.1 cmsearch ncRNA 1333760 1333836 . - . ID=rna-LLC55_RS06380;Parent=gene-LLC55_RS06380;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06380;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1333760 1333836 . - . ID=exon-LLC55_RS06380-1;Parent=rna-LLC55_RS06380;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06380;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1333994 1335484 . - . ID=gene-LLC55_RS06385;Name=LLC55_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06385;old_locus_tag=LLC55_06385 NZ_CP086200.1 Protein Homology CDS 1333994 1335484 . - 0 ID=cds-WP_069965090.1;Parent=gene-LLC55_RS06385;Dbxref=Genbank:WP_069965090.1;Name=WP_069965090.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571123.1;locus_tag=LLC55_RS06385;product=MATE family efflux transporter;protein_id=WP_069965090.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1335825 1336232 . + . ID=gene-LLC55_RS06390;Name=LLC55_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06390;old_locus_tag=LLC55_06390 NZ_CP086200.1 Protein Homology CDS 1335825 1336232 . + 0 ID=cds-WP_011407912.1;Parent=gene-LLC55_RS06390;Dbxref=Genbank:WP_011407912.1;Name=WP_011407912.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504229.1;locus_tag=LLC55_RS06390;product=RNA-binding S4 domain-containing protein;protein_id=WP_011407912.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1336367 1336534 . + . ID=gene-LLC55_RS06395;Name=LLC55_RS06395;end_range=1336534,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06395;old_locus_tag=LLC55_06395;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1336367 1336534 . + 0 ID=cds-LLC55_RS06395;Parent=gene-LLC55_RS06395;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1336534,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257114.1;locus_tag=LLC55_RS06395;partial=true;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1336652 1337866 . + . ID=gene-LLC55_RS06400;Name=LLC55_RS06400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06400;old_locus_tag=LLC55_06400 NZ_CP086200.1 Protein Homology CDS 1336652 1337866 . + 0 ID=cds-WP_011407913.1-2;Parent=gene-LLC55_RS06400;Dbxref=Genbank:WP_011407913.1;Name=WP_011407913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS06400;product=IS4-like element ISXo14 family transposase;protein_id=WP_011407913.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1337886 1339125 . + . ID=gene-LLC55_RS06405;Name=LLC55_RS06405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06405;old_locus_tag=LLC55_06405;partial=true;pseudo=true;start_range=.,1337886 NZ_CP086200.1 Protein Homology CDS 1337886 1339125 . + 0 ID=cds-LLC55_RS06405;Parent=gene-LLC55_RS06405;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS06405;partial=true;product=IS701 family transposase;pseudo=true;start_range=.,1337886;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1339201 1339452 . - . ID=gene-LLC55_RS06410;Name=LLC55_RS06410;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06410;old_locus_tag=LLC55_06410;partial=true;pseudo=true;start_range=.,1339201 NZ_CP086200.1 Protein Homology CDS 1339201 1339452 . - 0 ID=cds-LLC55_RS06410;Parent=gene-LLC55_RS06410;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812100.1;locus_tag=LLC55_RS06410;partial=true;product=glutathione S-transferase N-terminal domain-containing protein;pseudo=true;start_range=.,1339201;transl_table=11 NZ_CP086200.1 RefSeq gene 1339497 1339802 . - . ID=gene-LLC55_RS06415;Name=LLC55_RS06415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06415;old_locus_tag=LLC55_06415 NZ_CP086200.1 Protein Homology CDS 1339497 1339802 . - 0 ID=cds-WP_011258151.1;Parent=gene-LLC55_RS06415;Dbxref=Genbank:WP_011258151.1;Name=WP_011258151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258151.1;locus_tag=LLC55_RS06415;product=GIY-YIG nuclease family protein;protein_id=WP_011258151.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1340145 1340267 . - . ID=gene-LLC55_RS23450;Name=LLC55_RS23450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23450 NZ_CP086200.1 GeneMarkS-2+ CDS 1340145 1340267 . - 0 ID=cds-WP_256364563.1;Parent=gene-LLC55_RS23450;Dbxref=Genbank:WP_256364563.1;Name=WP_256364563.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23450;product=hypothetical protein;protein_id=WP_256364563.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1340248 1342833 . + . ID=gene-LLC55_RS06420;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=LLC55_RS06420;old_locus_tag=LLC55_06420 NZ_CP086200.1 Protein Homology CDS 1340248 1342833 . + 0 ID=cds-WP_011407916.1;Parent=gene-LLC55_RS06420;Dbxref=Genbank:WP_011407916.1;Name=WP_011407916.1;Ontology_term=GO:0009408,GO:0042026,GO:0005524,GO:0016887;gbkey=CDS;gene=clpB;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=response to heat|0009408||IEA,protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009580969.1;locus_tag=LLC55_RS06420;product=ATP-dependent chaperone ClpB;protein_id=WP_011407916.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1342901 1343869 . + . ID=gene-LLC55_RS06425;Name=LLC55_RS06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06425;old_locus_tag=LLC55_06425 NZ_CP086200.1 Protein Homology CDS 1342901 1343869 . + 0 ID=cds-WP_103057303.1;Parent=gene-LLC55_RS06425;Dbxref=Genbank:WP_103057303.1;Name=WP_103057303.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258153.1;locus_tag=LLC55_RS06425;product=hypothetical protein;protein_id=WP_103057303.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1343870 1343995 . + . ID=gene-LLC55_RS06430;Name=LLC55_RS06430;end_range=1343995,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06430;old_locus_tag=LLC55_06430;partial=true;pseudo=true;start_range=.,1343870 NZ_CP086200.1 Protein Homology CDS 1343870 1343995 . + 0 ID=cds-LLC55_RS06430;Parent=gene-LLC55_RS06430;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0019346,GO:0030170;end_range=1343995,.;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038183.1;locus_tag=LLC55_RS06430;partial=true;product=PLP-dependent transferase;pseudo=true;start_range=.,1343870;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1344144 1345184 . - . ID=gene-LLC55_RS06435;Name=LLC55_RS06435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06435;old_locus_tag=LLC55_06435;pseudo=true NZ_CP086200.1 Protein Homology CDS 1344144 1345184 . - 0 ID=cds-LLC55_RS06435;Parent=gene-LLC55_RS06435;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS06435;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1345308 1346093 . + . ID=gene-LLC55_RS06440;Name=LLC55_RS06440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06440;old_locus_tag=LLC55_06440;partial=true;pseudo=true;start_range=.,1345308 NZ_CP086200.1 Protein Homology CDS 1345308 1346093 . + 0 ID=cds-LLC55_RS06440;Parent=gene-LLC55_RS06440;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS06440;partial=true;product=IS5-like element ISXoo5 family transposase;pseudo=true;start_range=.,1345308;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1346104 1346454 . + . ID=gene-LLC55_RS06445;Name=LLC55_RS06445;end_range=1346454,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06445;old_locus_tag=LLC55_06445;partial=true;pseudo=true;start_range=.,1346104 NZ_CP086200.1 Protein Homology CDS 1346104 1346454 . + 0 ID=cds-LLC55_RS06445;Parent=gene-LLC55_RS06445;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1346454,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503409.1;locus_tag=LLC55_RS06445;partial=true;product=transposase;pseudo=true;start_range=.,1346104;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1346471 1346599 . + . ID=gene-LLC55_RS06450;Name=LLC55_RS06450;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06450;old_locus_tag=LLC55_06450;partial=true;pseudo=true;start_range=.,1346471 NZ_CP086200.1 Protein Homology CDS 1346471 1346599 . + 0 ID=cds-LLC55_RS06450;Parent=gene-LLC55_RS06450;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=LLC55_RS06450;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,1346471;transl_table=11 NZ_CP086200.1 cmsearch riboswitch 1346766 1346991 . + . ID=id-NZ_CP086200.1:1346766..1346991;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP086200.1 RefSeq gene 1347108 1348985 . + . ID=gene-LLC55_RS06455;Name=btuB;gbkey=Gene;gene=btuB;gene_biotype=protein_coding;locus_tag=LLC55_RS06455;old_locus_tag=LLC55_06455 NZ_CP086200.1 Protein Homology CDS 1347108 1348985 . + 0 ID=cds-WP_011258158.1;Parent=gene-LLC55_RS06455;Dbxref=Genbank:WP_011258158.1;Name=WP_011258158.1;Ontology_term=GO:0015889,GO:0015420,GO:0019867;gbkey=CDS;gene=btuB;go_component=outer membrane|0019867||IEA;go_function=ABC-type vitamin B12 transporter activity|0015420||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117952.1;locus_tag=LLC55_RS06455;product=TonB-dependent vitamin B12 receptor;protein_id=WP_011258158.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1349047 1349121 . + . ID=gene-LLC55_RS06460;Name=LLC55_RS06460;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06460;old_locus_tag=LLC55_06460 NZ_CP086200.1 cmsearch ncRNA 1349047 1349121 . + . ID=rna-LLC55_RS06460;Parent=gene-LLC55_RS06460;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06460;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1349047 1349121 . + . ID=exon-LLC55_RS06460-1;Parent=rna-LLC55_RS06460;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06460;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1349212 1350471 . - . ID=gene-LLC55_RS06465;Name=LLC55_RS06465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06465;old_locus_tag=LLC55_06465 NZ_CP086200.1 Protein Homology CDS 1349212 1350471 . - 0 ID=cds-WP_228329736.1;Parent=gene-LLC55_RS06465;Dbxref=Genbank:WP_228329736.1;Name=WP_228329736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444745.1;locus_tag=LLC55_RS06465;product=IS701-like element ISXo15 family transposase;protein_id=WP_228329736.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1350758 1351351 . + . ID=gene-LLC55_RS06470;Name=LLC55_RS06470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06470;old_locus_tag=LLC55_06470 NZ_CP086200.1 Protein Homology CDS 1350758 1351351 . + 0 ID=cds-WP_011258160.1;Parent=gene-LLC55_RS06470;Dbxref=Genbank:WP_011258160.1;Name=WP_011258160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304846.1;locus_tag=LLC55_RS06470;product=hypothetical protein;protein_id=WP_011258160.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1351351 1351950 . + . ID=gene-LLC55_RS06475;Name=LLC55_RS06475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06475;old_locus_tag=LLC55_06475 NZ_CP086200.1 Protein Homology CDS 1351351 1351950 . + 0 ID=cds-WP_027703819.1;Parent=gene-LLC55_RS06475;Dbxref=Genbank:WP_027703819.1;Name=WP_027703819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963715.1;locus_tag=LLC55_RS06475;product=hypothetical protein;protein_id=WP_027703819.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1351947 1352558 . + . ID=gene-LLC55_RS06480;Name=cobO;gbkey=Gene;gene=cobO;gene_biotype=protein_coding;locus_tag=LLC55_RS06480;old_locus_tag=LLC55_06480 NZ_CP086200.1 Protein Homology CDS 1351947 1352558 . + 0 ID=cds-WP_011258162.1;Parent=gene-LLC55_RS06480;Dbxref=Genbank:WP_011258162.1;Name=WP_011258162.1;Ontology_term=GO:0009236,GO:0008817;gbkey=CDS;gene=cobO;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571051.1;locus_tag=LLC55_RS06480;product=cob(I)yrinic acid a%2Cc-diamide adenosyltransferase;protein_id=WP_011258162.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1352631 1352969 . + . ID=gene-LLC55_RS06485;Name=LLC55_RS06485;end_range=1352969,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06485;old_locus_tag=LLC55_06485;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1352631 1352969 . + 0 ID=cds-LLC55_RS06485;Parent=gene-LLC55_RS06485;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1352969,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014402739.1;locus_tag=LLC55_RS06485;partial=true;product=adenosylcobinamide kinase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1352973 1353084 . + . ID=gene-LLC55_RS06490;Name=LLC55_RS06490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06490;old_locus_tag=LLC55_06490;partial=true;pseudo=true;start_range=.,1352973 NZ_CP086200.1 Protein Homology CDS 1352973 1353084 . + 0 ID=cds-LLC55_RS06490;Parent=gene-LLC55_RS06490;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913596.1;locus_tag=LLC55_RS06490;partial=true;product=adenosylcobinamide kinase;pseudo=true;start_range=.,1352973;transl_table=11 NZ_CP086200.1 RefSeq gene 1353072 1353593 . + . ID=gene-LLC55_RS06495;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=protein_coding;locus_tag=LLC55_RS06495;old_locus_tag=LLC55_06495 NZ_CP086200.1 Protein Homology CDS 1353072 1353593 . + 0 ID=cds-WP_011258163.1;Parent=gene-LLC55_RS06495;Dbxref=Genbank:WP_011258163.1;Name=WP_011258163.1;Ontology_term=GO:0009236,GO:0000166,GO:0043752;gbkey=CDS;gene=cobU;go_function=nucleotide binding|0000166||IEA,adenosylcobinamide kinase activity|0043752||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488884.1;locus_tag=LLC55_RS06495;product=bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase;protein_id=WP_011258163.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1353590 1354636 . + . ID=gene-LLC55_RS06500;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;locus_tag=LLC55_RS06500;old_locus_tag=LLC55_06500 NZ_CP086200.1 Protein Homology CDS 1353590 1354636 . + 0 ID=cds-WP_011407923.1;Parent=gene-LLC55_RS06500;Dbxref=Genbank:WP_011407923.1;Name=WP_011407923.1;Ontology_term=GO:0009236,GO:0008939;gbkey=CDS;gene=cobT;go_function=nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity|0008939||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304849.1;locus_tag=LLC55_RS06500;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=WP_011407923.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1354633 1355223 . + . ID=gene-LLC55_RS06505;Name=LLC55_RS06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06505;old_locus_tag=LLC55_06505 NZ_CP086200.1 Protein Homology CDS 1354633 1355223 . + 0 ID=cds-WP_011258165.1;Parent=gene-LLC55_RS06505;Dbxref=Genbank:WP_011258165.1;Name=WP_011258165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850683.1;locus_tag=LLC55_RS06505;product=histidine phosphatase family protein;protein_id=WP_011258165.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1355220 1355954 . + . ID=gene-LLC55_RS06510;Name=LLC55_RS06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06510;old_locus_tag=LLC55_06510 NZ_CP086200.1 Protein Homology CDS 1355220 1355954 . + 0 ID=cds-WP_011258166.1;Parent=gene-LLC55_RS06510;Dbxref=Genbank:WP_011258166.1;Name=WP_011258166.1;Ontology_term=GO:0051073;gbkey=CDS;go_function=adenosylcobinamide-GDP ribazoletransferase activity|0051073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963730.1;locus_tag=LLC55_RS06510;product=adenosylcobinamide-GDP ribazoletransferase;protein_id=WP_011258166.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1356048 1356124 . + . ID=gene-LLC55_RS06515;Name=LLC55_RS06515;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06515;old_locus_tag=LLC55_06515 NZ_CP086200.1 cmsearch ncRNA 1356048 1356124 . + . ID=rna-LLC55_RS06515;Parent=gene-LLC55_RS06515;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06515;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1356048 1356124 . + . ID=exon-LLC55_RS06515-1;Parent=rna-LLC55_RS06515;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06515;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1356129 1357325 . - . ID=gene-LLC55_RS06520;Name=LLC55_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06520;old_locus_tag=LLC55_06520 NZ_CP086200.1 Protein Homology CDS 1356129 1357325 . - 0 ID=cds-WP_011407924.1;Parent=gene-LLC55_RS06520;Dbxref=Genbank:WP_011407924.1;Name=WP_011407924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305442.1;locus_tag=LLC55_RS06520;product=type III PLP-dependent enzyme;protein_id=WP_011407924.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1357322 1359091 . - . ID=gene-LLC55_RS06525;Name=LLC55_RS06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06525;old_locus_tag=LLC55_06525 NZ_CP086200.1 Protein Homology CDS 1357322 1359091 . - 0 ID=cds-WP_011407925.1;Parent=gene-LLC55_RS06525;Dbxref=Genbank:WP_011407925.1;Name=WP_011407925.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850679.1;locus_tag=LLC55_RS06525;product=iron transporter;protein_id=WP_011407925.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1359069 1360265 . - . ID=gene-LLC55_RS06530;Name=LLC55_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06530;old_locus_tag=LLC55_06530 NZ_CP086200.1 Protein Homology CDS 1359069 1360265 . - 0 ID=cds-WP_011407926.1;Parent=gene-LLC55_RS06530;Dbxref=Genbank:WP_011407926.1;Name=WP_011407926.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160094.1;locus_tag=LLC55_RS06530;product=MFS transporter;protein_id=WP_011407926.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1360262 1362064 . - . ID=gene-LLC55_RS06535;Name=LLC55_RS06535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06535;old_locus_tag=LLC55_06535 NZ_CP086200.1 Protein Homology CDS 1360262 1362064 . - 0 ID=cds-WP_011258170.1;Parent=gene-LLC55_RS06535;Dbxref=Genbank:WP_011258170.1;Name=WP_011258170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571067.1;locus_tag=LLC55_RS06535;product=IucA/IucC family siderophore biosynthesis protein;protein_id=WP_011258170.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1362061 1363287 . - . ID=gene-LLC55_RS06540;Name=LLC55_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06540;old_locus_tag=LLC55_06540 NZ_CP086200.1 Protein Homology CDS 1362061 1363287 . - 0 ID=cds-WP_011258171.1;Parent=gene-LLC55_RS06540;Dbxref=Genbank:WP_011258171.1;Name=WP_011258171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452407.1;locus_tag=LLC55_RS06540;product=siderophore biosynthesis protein PvsA;protein_id=WP_011258171.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1363523 1365664 . - . ID=gene-LLC55_RS06545;Name=LLC55_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06545;old_locus_tag=LLC55_06545 NZ_CP086200.1 Protein Homology CDS 1363523 1365664 . - 0 ID=cds-WP_011407927.1;Parent=gene-LLC55_RS06545;Dbxref=Genbank:WP_011407927.1;Name=WP_011407927.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore-iron transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488864.1;locus_tag=LLC55_RS06545;product=TonB-dependent siderophore receptor;protein_id=WP_011407927.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1365665 1366426 . - . ID=gene-LLC55_RS06550;Name=LLC55_RS06550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06550;old_locus_tag=LLC55_06550 NZ_CP086200.1 Protein Homology CDS 1365665 1366426 . - 0 ID=cds-WP_011258173.1;Parent=gene-LLC55_RS06550;Dbxref=Genbank:WP_011258173.1;Name=WP_011258173.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913611.1;locus_tag=LLC55_RS06550;product=aldolase/citrate lyase family protein;protein_id=WP_011258173.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1366571 1367671 . + . ID=gene-LLC55_RS06555;Name=LLC55_RS06555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06555;old_locus_tag=LLC55_06555;pseudo=true NZ_CP086200.1 Protein Homology CDS 1366571 1367671 . + 0 ID=cds-LLC55_RS06555;Parent=gene-LLC55_RS06555;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS06555;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1367835 1369532 . - . ID=gene-LLC55_RS06560;Name=LLC55_RS06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06560;old_locus_tag=LLC55_06560 NZ_CP086200.1 Protein Homology CDS 1367835 1369532 . - 0 ID=cds-WP_069959769.1;Parent=gene-LLC55_RS06560;Dbxref=Genbank:WP_069959769.1;Name=WP_069959769.1;Ontology_term=GO:0006813,GO:0008324,GO:0015299,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=cation transmembrane transporter activity|0008324||IEA,solute:proton antiporter activity|0015299||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452404.1;locus_tag=LLC55_RS06560;product=Kef family K(+) transporter;protein_id=WP_069959769.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1370095 1370514 . + . ID=gene-LLC55_RS06565;Name=LLC55_RS06565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06565;old_locus_tag=LLC55_06565 NZ_CP086200.1 GeneMarkS-2+ CDS 1370095 1370514 . + 0 ID=cds-WP_228329695.1;Parent=gene-LLC55_RS06565;Dbxref=Genbank:WP_228329695.1;Name=WP_228329695.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS06565;product=hypothetical protein;protein_id=WP_228329695.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1370632 1373031 . - . ID=gene-LLC55_RS06570;Name=LLC55_RS06570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06570;old_locus_tag=LLC55_06570 NZ_CP086200.1 Protein Homology CDS 1370632 1373031 . - 0 ID=cds-WP_069959770.1;Parent=gene-LLC55_RS06570;Dbxref=Genbank:WP_069959770.1;Name=WP_069959770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090820.1;locus_tag=LLC55_RS06570;product=TonB-dependent receptor;protein_id=WP_069959770.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1373364 1375751 . - . ID=gene-LLC55_RS06575;Name=LLC55_RS06575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06575;old_locus_tag=LLC55_06575 NZ_CP086200.1 Protein Homology CDS 1373364 1375751 . - 0 ID=cds-WP_011258178.1;Parent=gene-LLC55_RS06575;Dbxref=Genbank:WP_011258178.1;Name=WP_011258178.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921435.1;locus_tag=LLC55_RS06575;product=TonB-dependent receptor;protein_id=WP_011258178.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1376025 1376465 . - . ID=gene-LLC55_RS06580;Name=LLC55_RS06580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06580;old_locus_tag=LLC55_06580 NZ_CP086200.1 Protein Homology CDS 1376025 1376465 . - 0 ID=cds-WP_069959771.1;Parent=gene-LLC55_RS06580;Dbxref=Genbank:WP_069959771.1;Name=WP_069959771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159330.1;locus_tag=LLC55_RS06580;product=VOC family protein;protein_id=WP_069959771.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1376556 1376631 . - . ID=gene-LLC55_RS06585;Name=LLC55_RS06585;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06585;old_locus_tag=LLC55_06585 NZ_CP086200.1 cmsearch ncRNA 1376556 1376631 . - . ID=rna-LLC55_RS06585;Parent=gene-LLC55_RS06585;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06585;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1376556 1376631 . - . ID=exon-LLC55_RS06585-1;Parent=rna-LLC55_RS06585;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06585;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1376929 1379316 . - . ID=gene-LLC55_RS06590;Name=LLC55_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06590;old_locus_tag=LLC55_06590 NZ_CP086200.1 Protein Homology CDS 1376929 1379316 . - 0 ID=cds-WP_075242261.1;Parent=gene-LLC55_RS06590;Dbxref=Genbank:WP_075242261.1;Name=WP_075242261.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156670.1;locus_tag=LLC55_RS06590;product=TonB-dependent receptor;protein_id=WP_075242261.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1379496 1381412 . + . ID=gene-LLC55_RS06595;Name=LLC55_RS06595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06595;old_locus_tag=LLC55_06595 NZ_CP086200.1 Protein Homology CDS 1379496 1381412 . + 0 ID=cds-WP_041182018.1;Parent=gene-LLC55_RS06595;Dbxref=Genbank:WP_041182018.1;Name=WP_041182018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924596.1;locus_tag=LLC55_RS06595;product=ABC-F family ATP-binding cassette domain-containing protein;protein_id=WP_041182018.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1381487 1381560 . + . ID=gene-LLC55_RS06600;Name=LLC55_RS06600;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06600;old_locus_tag=LLC55_06600 NZ_CP086200.1 cmsearch ncRNA 1381487 1381560 . + . ID=rna-LLC55_RS06600;Parent=gene-LLC55_RS06600;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06600;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1381487 1381560 . + . ID=exon-LLC55_RS06600-1;Parent=rna-LLC55_RS06600;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06600;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 1381609 1382110 . + . ID=gene-LLC55_RS06605;Name=LLC55_RS06605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06605;old_locus_tag=LLC55_06605;pseudo=true NZ_CP086200.1 Protein Homology CDS 1381609 1382110 . + 0 ID=cds-LLC55_RS06605;Parent=gene-LLC55_RS06605;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156668.1;locus_tag=LLC55_RS06605;product=YcxB family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1382134 1382979 . - . ID=gene-LLC55_RS06610;Name=ampR;gbkey=Gene;gene=ampR;gene_biotype=protein_coding;locus_tag=LLC55_RS06610;old_locus_tag=LLC55_06610 NZ_CP086200.1 Protein Homology CDS 1382134 1382979 . - 0 ID=cds-WP_011258183.1;Parent=gene-LLC55_RS06610;Dbxref=Genbank:WP_011258183.1;Name=WP_011258183.1;gbkey=CDS;gene=ampR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156667.1;locus_tag=LLC55_RS06610;product=LysR family transcriptional regulator AmpR;protein_id=WP_011258183.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1383080 1384020 . + . ID=gene-LLC55_RS06615;Name=bla;gbkey=Gene;gene=bla;gene_biotype=pseudogene;locus_tag=LLC55_RS06615;old_locus_tag=LLC55_06615;pseudo=true NZ_CP086200.1 Protein Homology CDS 1383080 1384020 . + 0 ID=cds-LLC55_RS06615;Parent=gene-LLC55_RS06615;Note=frameshifted;Ontology_term=GO:0030655,GO:0046677,GO:0008800;gbkey=CDS;gene=bla;go_function=beta-lactamase activity|0008800||IEA;go_process=beta-lactam antibiotic catabolic process|0030655||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258184.1;locus_tag=LLC55_RS06615;product=class A beta-lactamase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1384090 1384908 . + . ID=gene-LLC55_RS06620;Name=LLC55_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06620;old_locus_tag=LLC55_06620 NZ_CP086200.1 Protein Homology CDS 1384090 1384908 . + 0 ID=cds-WP_033013356.1;Parent=gene-LLC55_RS06620;Dbxref=Genbank:WP_033013356.1;Name=WP_033013356.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407936.1;locus_tag=LLC55_RS06620;product=alpha/beta hydrolase;protein_id=WP_033013356.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1384991 1386466 . + . ID=gene-LLC55_RS06625;Name=LLC55_RS06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06625;old_locus_tag=LLC55_06625 NZ_CP086200.1 Protein Homology CDS 1384991 1386466 . + 0 ID=cds-WP_069959772.1;Parent=gene-LLC55_RS06625;Dbxref=Genbank:WP_069959772.1;Name=WP_069959772.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS06625;product=IS5-like element ISXoo5 family transposase;protein_id=WP_069959772.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1386631 1387008 . + . ID=gene-LLC55_RS06630;Name=LLC55_RS06630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06630;old_locus_tag=LLC55_06630;pseudo=true NZ_CP086200.1 Protein Homology CDS 1386631 1387008 . + 0 ID=cds-LLC55_RS06630;Parent=gene-LLC55_RS06630;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009582697.1;locus_tag=LLC55_RS06630;product=DUF805 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1387019 1387300 . + . ID=gene-LLC55_RS06635;Name=LLC55_RS06635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06635;old_locus_tag=LLC55_06635 NZ_CP086200.1 GeneMarkS-2+ CDS 1387019 1387300 . + 0 ID=cds-WP_228329696.1;Parent=gene-LLC55_RS06635;Dbxref=Genbank:WP_228329696.1;Name=WP_228329696.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS06635;product=hypothetical protein;protein_id=WP_228329696.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1387518 1388309 . - . ID=gene-LLC55_RS06640;Name=LLC55_RS06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06640;old_locus_tag=LLC55_06640 NZ_CP086200.1 Protein Homology CDS 1387518 1388309 . - 0 ID=cds-WP_011407938.1;Parent=gene-LLC55_RS06640;Dbxref=Genbank:WP_011407938.1;Name=WP_011407938.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156587.1;locus_tag=LLC55_RS06640;product=response regulator transcription factor;protein_id=WP_011407938.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1388795 1388935 . + . ID=gene-LLC55_RS06645;Name=LLC55_RS06645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06645;old_locus_tag=LLC55_06645 NZ_CP086200.1 Protein Homology CDS 1388795 1388935 . + 0 ID=cds-WP_162828835.1;Parent=gene-LLC55_RS06645;Dbxref=Genbank:WP_162828835.1;Name=WP_162828835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504254.1;locus_tag=LLC55_RS06645;product=hypothetical protein;protein_id=WP_162828835.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1389146 1390501 . + . ID=gene-LLC55_RS06650;Name=LLC55_RS06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06650;old_locus_tag=LLC55_06650 NZ_CP086200.1 Protein Homology CDS 1389146 1390501 . + 0 ID=cds-WP_173340392.1;Parent=gene-LLC55_RS06650;Dbxref=Genbank:WP_173340392.1;Name=WP_173340392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156588.1;locus_tag=LLC55_RS06650;product=helix-turn-helix transcriptional regulator;protein_id=WP_173340392.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1390714 1392582 . + . ID=gene-LLC55_RS06655;Name=LLC55_RS06655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06655;old_locus_tag=LLC55_06655 NZ_CP086200.1 Protein Homology CDS 1390714 1392582 . + 0 ID=cds-WP_011407939.1;Parent=gene-LLC55_RS06655;Dbxref=Genbank:WP_011407939.1;Name=WP_011407939.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928780.1;locus_tag=LLC55_RS06655;product=ATP-binding protein;protein_id=WP_011407939.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1392607 1394931 . + . ID=gene-LLC55_RS06660;Name=LLC55_RS06660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06660;old_locus_tag=LLC55_06660 NZ_CP086200.1 Protein Homology CDS 1392607 1394931 . + 0 ID=cds-WP_011407940.1;Parent=gene-LLC55_RS06660;Dbxref=Genbank:WP_011407940.1;Name=WP_011407940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304704.1;locus_tag=LLC55_RS06660;product=hypothetical protein;protein_id=WP_011407940.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1395530 1396225 . - . ID=gene-LLC55_RS06665;Name=LLC55_RS06665;end_range=1396225,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06665;old_locus_tag=LLC55_06665;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1395530 1396225 . - 0 ID=cds-LLC55_RS06665;Parent=gene-LLC55_RS06665;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=1396225,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS06665;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1396237 1396982 . - . ID=gene-LLC55_RS06670;Name=LLC55_RS06670;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06670;old_locus_tag=LLC55_06670;partial=true;pseudo=true;start_range=.,1396237 NZ_CP086200.1 Protein Homology CDS 1396237 1396982 . - 0 ID=cds-LLC55_RS06670;Parent=gene-LLC55_RS06670;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611071.1;locus_tag=LLC55_RS06670;partial=true;product=transposase;pseudo=true;start_range=.,1396237;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1397111 1397566 . - . ID=gene-LLC55_RS06675;Name=LLC55_RS06675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06675;old_locus_tag=LLC55_06675;partial=true;pseudo=true;start_range=.,1397111 NZ_CP086200.1 Protein Homology CDS 1397111 1397566 . - 0 ID=cds-LLC55_RS06675;Parent=gene-LLC55_RS06675;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS06675;partial=true;product=transposase;pseudo=true;start_range=.,1397111;transl_table=11 NZ_CP086200.1 RefSeq gene 1397721 1398905 . + . ID=gene-LLC55_RS06680;Name=LLC55_RS06680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06680;old_locus_tag=LLC55_06680 NZ_CP086200.1 Protein Homology CDS 1397721 1398905 . + 0 ID=cds-WP_011407609.1-2;Parent=gene-LLC55_RS06680;Dbxref=Genbank:WP_011407609.1;Name=WP_011407609.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS06680;product=IS256-like element IS1113 family transposase;protein_id=WP_011407609.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1398997 1400373 . - . ID=gene-LLC55_RS06685;Name=LLC55_RS06685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06685;old_locus_tag=LLC55_06685 NZ_CP086200.1 Protein Homology CDS 1398997 1400373 . - 0 ID=cds-WP_228329697.1;Parent=gene-LLC55_RS06685;Dbxref=Genbank:WP_228329697.1;Name=WP_228329697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117152.1;locus_tag=LLC55_RS06685;product=glutamine synthetase family protein;protein_id=WP_228329697.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1400415 1401350 . - . ID=gene-LLC55_RS06690;Name=LLC55_RS06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06690;old_locus_tag=LLC55_06690 NZ_CP086200.1 Protein Homology CDS 1400415 1401350 . - 0 ID=cds-WP_011407945.1;Parent=gene-LLC55_RS06690;Dbxref=Genbank:WP_011407945.1;Name=WP_011407945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407945.1;locus_tag=LLC55_RS06690;product=homoserine O-succinyltransferase;protein_id=WP_011407945.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1401417 1402001 . - . ID=gene-LLC55_RS06695;Name=LLC55_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06695;old_locus_tag=LLC55_06695 NZ_CP086200.1 Protein Homology CDS 1401417 1402001 . - 0 ID=cds-WP_228329698.1;Parent=gene-LLC55_RS06695;Dbxref=Genbank:WP_228329698.1;Name=WP_228329698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363243.1;locus_tag=LLC55_RS06695;product=LysE family translocator;protein_id=WP_228329698.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1402051 1402911 . - . ID=gene-LLC55_RS06700;Name=LLC55_RS06700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06700;old_locus_tag=LLC55_06700 NZ_CP086200.1 Protein Homology CDS 1402051 1402911 . - 0 ID=cds-WP_011407947.1;Parent=gene-LLC55_RS06700;Dbxref=Genbank:WP_011407947.1;Name=WP_011407947.1;Note=Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26.;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477131.1;locus_tag=LLC55_RS06700;product=gamma-glutamyl-gamma-aminobutyrate hydrolase family protein;protein_id=WP_011407947.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1402929 1403996 . - . ID=gene-LLC55_RS06705;Name=LLC55_RS06705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06705;old_locus_tag=LLC55_06705 NZ_CP086200.1 Protein Homology CDS 1402929 1403996 . - 0 ID=cds-WP_011258199.1;Parent=gene-LLC55_RS06705;Dbxref=Genbank:WP_011258199.1;Name=WP_011258199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302839.1;locus_tag=LLC55_RS06705;product=fatty acid desaturase family protein;protein_id=WP_011258199.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1403996 1405318 . - . ID=gene-LLC55_RS06710;Name=LLC55_RS06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06710;old_locus_tag=LLC55_06710 NZ_CP086200.1 Protein Homology CDS 1403996 1405318 . - 0 ID=cds-WP_011258200.1;Parent=gene-LLC55_RS06710;Dbxref=Genbank:WP_011258200.1;Name=WP_011258200.1;Ontology_term=GO:0019346,GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258200.1;locus_tag=LLC55_RS06710;product=PLP-dependent transferase;protein_id=WP_011258200.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1405318 1406472 . - . ID=gene-LLC55_RS06715;Name=LLC55_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06715;old_locus_tag=LLC55_06715 NZ_CP086200.1 Protein Homology CDS 1405318 1406472 . - 0 ID=cds-WP_011407949.1;Parent=gene-LLC55_RS06715;Dbxref=Genbank:WP_011407949.1;Name=WP_011407949.1;Ontology_term=GO:0019700,GO:0047304;gbkey=CDS;go_function=2-aminoethylphosphonate-pyruvate transaminase activity|0047304||IEA;go_process=organic phosphonate catabolic process|0019700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258201.1;locus_tag=LLC55_RS06715;product=2-aminoethylphosphonate--pyruvate transaminase;protein_id=WP_011407949.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1406750 1407001 . - . ID=gene-LLC55_RS06720;Name=LLC55_RS06720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06720;old_locus_tag=LLC55_06720 NZ_CP086200.1 Protein Homology CDS 1406750 1407001 . - 0 ID=cds-WP_133265479.1;Parent=gene-LLC55_RS06720;Dbxref=Genbank:WP_133265479.1;Name=WP_133265479.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363233.1;locus_tag=LLC55_RS06720;product=hypothetical protein;protein_id=WP_133265479.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1407571 1407729 . - . ID=gene-LLC55_RS06725;Name=LLC55_RS06725;end_range=1407729,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06725;old_locus_tag=LLC55_06725;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1407571 1407729 . - 0 ID=cds-LLC55_RS06725;Parent=gene-LLC55_RS06725;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;end_range=1407729,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612184.1;locus_tag=LLC55_RS06725;partial=true;product=integrase core domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1407737 1408702 . - . ID=gene-LLC55_RS06730;Name=LLC55_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06730;old_locus_tag=LLC55_06730 NZ_CP086200.1 Protein Homology CDS 1407737 1408702 . - 0 ID=cds-WP_109181895.1;Parent=gene-LLC55_RS06730;Dbxref=Genbank:WP_109181895.1;Name=WP_109181895.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS06730;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181895.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1408790 1409679 . - . ID=gene-LLC55_RS06735;Name=LLC55_RS06735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06735;old_locus_tag=LLC55_06735;partial=true;pseudo=true;start_range=.,1408790 NZ_CP086200.1 Protein Homology CDS 1408790 1409679 . - 0 ID=cds-LLC55_RS06735;Parent=gene-LLC55_RS06735;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612143.1;locus_tag=LLC55_RS06735;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,1408790;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1409807 1410151 . - . ID=gene-LLC55_RS06740;Name=LLC55_RS06740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06740;old_locus_tag=LLC55_06740;partial=true;pseudo=true;start_range=.,1409807 NZ_CP086200.1 Protein Homology CDS 1409807 1410151 . - 0 ID=cds-LLC55_RS06740;Parent=gene-LLC55_RS06740;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS06740;partial=true;product=transposase;pseudo=true;start_range=.,1409807;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1410223 1410492 . + . ID=gene-LLC55_RS06745;Name=LLC55_RS06745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06745;old_locus_tag=LLC55_06745;partial=true;pseudo=true;start_range=.,1410223 NZ_CP086200.1 Protein Homology CDS 1410223 1410492 . + 0 ID=cds-LLC55_RS06745;Parent=gene-LLC55_RS06745;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_022557821.1;locus_tag=LLC55_RS06745;partial=true;product=transposase;pseudo=true;start_range=.,1410223;transl_table=11 NZ_CP086200.1 RefSeq gene 1410638 1410967 . - . ID=gene-LLC55_RS06750;Name=LLC55_RS06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06750;old_locus_tag=LLC55_06750 NZ_CP086200.1 Protein Homology CDS 1410638 1410967 . - 0 ID=cds-WP_011258205.1;Parent=gene-LLC55_RS06750;Dbxref=Genbank:WP_011258205.1;Name=WP_011258205.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508448.1;locus_tag=LLC55_RS06750;product=non-heme iron oxygenase ferredoxin subunit;protein_id=WP_011258205.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1410964 1411503 . - . ID=gene-LLC55_RS06755;Name=LLC55_RS06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06755;old_locus_tag=LLC55_06755 NZ_CP086200.1 Protein Homology CDS 1410964 1411503 . - 0 ID=cds-WP_011258206.1;Parent=gene-LLC55_RS06755;Dbxref=Genbank:WP_011258206.1;Name=WP_011258206.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157683.1;locus_tag=LLC55_RS06755;product=GNAT family N-acetyltransferase;protein_id=WP_011258206.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1411761 1413005 . - . ID=gene-LLC55_RS06760;Name=LLC55_RS06760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06760;old_locus_tag=LLC55_06760 NZ_CP086200.1 Protein Homology CDS 1411761 1413005 . - 0 ID=cds-WP_011258207.1;Parent=gene-LLC55_RS06760;Dbxref=Genbank:WP_011258207.1;Name=WP_011258207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157682.1;locus_tag=LLC55_RS06760;product=cysteine desulfurase;protein_id=WP_011258207.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1413002 1414264 . - . ID=gene-LLC55_RS06765;Name=sufD;gbkey=Gene;gene=sufD;gene_biotype=protein_coding;locus_tag=LLC55_RS06765;old_locus_tag=LLC55_06765 NZ_CP086200.1 Protein Homology CDS 1413002 1414264 . - 0 ID=cds-WP_011258208.1;Parent=gene-LLC55_RS06765;Dbxref=Genbank:WP_011258208.1;Name=WP_011258208.1;Ontology_term=GO:0016226,GO:0005198;gbkey=CDS;gene=sufD;go_function=structural molecule activity|0005198||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090672.1;locus_tag=LLC55_RS06765;product=Fe-S cluster assembly protein SufD;protein_id=WP_011258208.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1414264 1415028 . - . ID=gene-LLC55_RS06770;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=LLC55_RS06770;old_locus_tag=LLC55_06770 NZ_CP086200.1 Protein Homology CDS 1414264 1415028 . - 0 ID=cds-WP_011407952.1;Parent=gene-LLC55_RS06770;Dbxref=Genbank:WP_011407952.1;Name=WP_011407952.1;Ontology_term=GO:0016226,GO:0005524;gbkey=CDS;gene=sufC;go_function=ATP binding|0005524||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157680.1;locus_tag=LLC55_RS06770;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_011407952.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1415286 1416743 . - . ID=gene-LLC55_RS06775;Name=sufB;gbkey=Gene;gene=sufB;gene_biotype=protein_coding;locus_tag=LLC55_RS06775;old_locus_tag=LLC55_06775 NZ_CP086200.1 Protein Homology CDS 1415286 1416743 . - 0 ID=cds-WP_075242215.1;Parent=gene-LLC55_RS06775;Dbxref=Genbank:WP_075242215.1;Name=WP_075242215.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufB;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902344.1;locus_tag=LLC55_RS06775;product=Fe-S cluster assembly protein SufB;protein_id=WP_075242215.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1416759 1417217 . - . ID=gene-LLC55_RS06780;Name=LLC55_RS06780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06780;old_locus_tag=LLC55_06780 NZ_CP086200.1 Protein Homology CDS 1416759 1417217 . - 0 ID=cds-WP_011407954.1;Parent=gene-LLC55_RS06780;Dbxref=Genbank:WP_011407954.1;Name=WP_011407954.1;Ontology_term=GO:0006355,GO:0016226;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369303.1;locus_tag=LLC55_RS06780;product=SUF system Fe-S cluster assembly regulator;protein_id=WP_011407954.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1417389 1417856 . + . ID=gene-LLC55_RS06785;Name=LLC55_RS06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06785;old_locus_tag=LLC55_06785 NZ_CP086200.1 Protein Homology CDS 1417389 1417856 . + 0 ID=cds-WP_003487757.1;Parent=gene-LLC55_RS06785;Dbxref=Genbank:WP_003487757.1;Name=WP_003487757.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237451.1;locus_tag=LLC55_RS06785;product=SET domain-containing protein-lysine N-methyltransferase;protein_id=WP_003487757.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1417961 1418164 . + . ID=gene-LLC55_RS06790;Name=LLC55_RS06790;end_range=1418164,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06790;old_locus_tag=LLC55_06790;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1417961 1418164 . + 0 ID=cds-LLC55_RS06790;Parent=gene-LLC55_RS06790;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1418164,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157678.1;locus_tag=LLC55_RS06790;partial=true;product=peptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1418174 1418250 . - . ID=gene-LLC55_RS06795;Name=LLC55_RS06795;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06795;old_locus_tag=LLC55_06795 NZ_CP086200.1 cmsearch ncRNA 1418174 1418250 . - . ID=rna-LLC55_RS06795;Parent=gene-LLC55_RS06795;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06795;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1418174 1418250 . - . ID=exon-LLC55_RS06795-1;Parent=rna-LLC55_RS06795;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06795;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 1418310 1418666 . + . ID=gene-LLC55_RS06800;Name=LLC55_RS06800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06800;old_locus_tag=LLC55_06800;partial=true;pseudo=true;start_range=.,1418310 NZ_CP086200.1 Protein Homology CDS 1418310 1418666 . + 0 ID=cds-LLC55_RS06800;Parent=gene-LLC55_RS06800;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157678.1;locus_tag=LLC55_RS06800;partial=true;product=DJ-1/PfpI family protein;pseudo=true;start_range=.,1418310;transl_table=11 NZ_CP086200.1 RefSeq gene 1418784 1419380 . - . ID=gene-LLC55_RS06805;Name=LLC55_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06805;old_locus_tag=LLC55_06805 NZ_CP086200.1 Protein Homology CDS 1418784 1419380 . - 0 ID=cds-WP_011258212.1;Parent=gene-LLC55_RS06805;Dbxref=Genbank:WP_011258212.1;Name=WP_011258212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487749.1;locus_tag=LLC55_RS06805;product=DUF1439 domain-containing protein;protein_id=WP_011258212.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1419436 1419792 . - . ID=gene-LLC55_RS06810;Name=LLC55_RS06810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06810;old_locus_tag=LLC55_06810 NZ_CP086200.1 Protein Homology CDS 1419436 1419792 . - 0 ID=cds-WP_027703897.1;Parent=gene-LLC55_RS06810;Dbxref=Genbank:WP_027703897.1;Name=WP_027703897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157676.1;locus_tag=LLC55_RS06810;product=hypothetical protein;protein_id=WP_027703897.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1420036 1420377 . - . ID=gene-LLC55_RS06815;Name=LLC55_RS06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06815;old_locus_tag=LLC55_06815 NZ_CP086200.1 Protein Homology CDS 1420036 1420377 . - 0 ID=cds-WP_027703896.1;Parent=gene-LLC55_RS06815;Dbxref=Genbank:WP_027703896.1;Name=WP_027703896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157675.1;locus_tag=LLC55_RS06815;product=DUF3861 family protein;protein_id=WP_027703896.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1420435 1421076 . - . ID=gene-LLC55_RS06820;Name=LLC55_RS06820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06820;old_locus_tag=LLC55_06820 NZ_CP086200.1 Protein Homology CDS 1420435 1421076 . - 0 ID=cds-WP_044757022.1;Parent=gene-LLC55_RS06820;Dbxref=Genbank:WP_044757022.1;Name=WP_044757022.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157674.1;locus_tag=LLC55_RS06820;product=M23 family metallopeptidase;protein_id=WP_044757022.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1421182 1421607 . - . ID=gene-LLC55_RS06825;Name=LLC55_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06825;old_locus_tag=LLC55_06825 NZ_CP086200.1 Protein Homology CDS 1421182 1421607 . - 0 ID=cds-WP_011258216.1;Parent=gene-LLC55_RS06825;Dbxref=Genbank:WP_011258216.1;Name=WP_011258216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502532.1;locus_tag=LLC55_RS06825;product=HU family DNA-binding protein;protein_id=WP_011258216.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1422252 1423571 . - . ID=gene-LLC55_RS06830;Name=LLC55_RS06830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06830;old_locus_tag=LLC55_06830;pseudo=true NZ_CP086200.1 Protein Homology CDS 1422252 1423571 . - 0 ID=cds-LLC55_RS06830;Parent=gene-LLC55_RS06830;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS06830;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1423642 1424502 . - . ID=gene-LLC55_RS06835;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=LLC55_RS06835;old_locus_tag=LLC55_06835 NZ_CP086200.1 Protein Homology CDS 1423642 1424502 . - 0 ID=cds-WP_011407961.1;Parent=gene-LLC55_RS06835;Dbxref=Genbank:WP_011407961.1;Name=WP_011407961.1;Ontology_term=GO:0006561,GO:0004735;gbkey=CDS;gene=proC;go_function=pyrroline-5-carboxylate reductase activity|0004735||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348110.1;locus_tag=LLC55_RS06835;product=pyrroline-5-carboxylate reductase;protein_id=WP_011407961.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1424546 1425238 . - . ID=gene-LLC55_RS06840;Name=LLC55_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06840;old_locus_tag=LLC55_06840 NZ_CP086200.1 Protein Homology CDS 1424546 1425238 . - 0 ID=cds-WP_011407962.1;Parent=gene-LLC55_RS06840;Dbxref=Genbank:WP_011407962.1;Name=WP_011407962.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157671.1;locus_tag=LLC55_RS06840;product=YggS family pyridoxal phosphate-dependent enzyme;protein_id=WP_011407962.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1425602 1426639 . + . ID=gene-LLC55_RS06845;Name=LLC55_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06845;old_locus_tag=LLC55_06845 NZ_CP086200.1 Protein Homology CDS 1425602 1426639 . + 0 ID=cds-WP_011258220.1;Parent=gene-LLC55_RS06845;Dbxref=Genbank:WP_011258220.1;Name=WP_011258220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185385.1;locus_tag=LLC55_RS06845;product=type IV pilus twitching motility protein PilT;protein_id=WP_011258220.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1426753 1427883 . + . ID=gene-LLC55_RS06850;Name=LLC55_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06850;old_locus_tag=LLC55_06850 NZ_CP086200.1 Protein Homology CDS 1426753 1427883 . + 0 ID=cds-WP_011407963.1;Parent=gene-LLC55_RS06850;Dbxref=Genbank:WP_011407963.1;Name=WP_011407963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489921.1;locus_tag=LLC55_RS06850;product=PilT/PilU family type 4a pilus ATPase;protein_id=WP_011407963.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1428155 1428829 . + . ID=gene-LLC55_RS06855;Name=LLC55_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06855;old_locus_tag=LLC55_06855 NZ_CP086200.1 Protein Homology CDS 1428155 1428829 . + 0 ID=cds-WP_027703695.1;Parent=gene-LLC55_RS06855;Dbxref=Genbank:WP_027703695.1;Name=WP_027703695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851096.1;locus_tag=LLC55_RS06855;product=YitT family protein;protein_id=WP_027703695.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1428859 1428934 . - . ID=gene-LLC55_RS06860;Name=LLC55_RS06860;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06860;old_locus_tag=LLC55_06860 NZ_CP086200.1 cmsearch ncRNA 1428859 1428934 . - . ID=rna-LLC55_RS06860;Parent=gene-LLC55_RS06860;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06860;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1428859 1428934 . - . ID=exon-LLC55_RS06860-1;Parent=rna-LLC55_RS06860;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06860;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1429453 1430025 . - . ID=gene-LLC55_RS06870;Name=LLC55_RS06870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06870;old_locus_tag=LLC55_06870 NZ_CP086200.1 Protein Homology CDS 1429453 1430025 . - 0 ID=cds-WP_011407966.1;Parent=gene-LLC55_RS06870;Dbxref=Genbank:WP_011407966.1;Name=WP_011407966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502539.1;locus_tag=LLC55_RS06870;product=DNA-3-methyladenine glycosylase I;protein_id=WP_011407966.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1430022 1431218 . - . ID=gene-LLC55_RS06875;Name=LLC55_RS06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06875;old_locus_tag=LLC55_06875 NZ_CP086200.1 GeneMarkS-2+ CDS 1430022 1431218 . - 0 ID=cds-WP_228329699.1;Parent=gene-LLC55_RS06875;Dbxref=Genbank:WP_228329699.1;Name=WP_228329699.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS06875;product=hypothetical protein;protein_id=WP_228329699.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1431294 1431860 . + . ID=gene-LLC55_RS06880;Name=LLC55_RS06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06880;old_locus_tag=LLC55_06880 NZ_CP086200.1 Protein Homology CDS 1431294 1431860 . + 0 ID=cds-WP_011258225.1;Parent=gene-LLC55_RS06880;Dbxref=Genbank:WP_011258225.1;Name=WP_011258225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802054.1;locus_tag=LLC55_RS06880;product=YqgE/AlgH family protein;protein_id=WP_011258225.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1431853 1432320 . + . ID=gene-LLC55_RS06885;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=LLC55_RS06885;old_locus_tag=LLC55_06885 NZ_CP086200.1 Protein Homology CDS 1431853 1432320 . + 0 ID=cds-WP_011407969.1;Parent=gene-LLC55_RS06885;Dbxref=Genbank:WP_011407969.1;Name=WP_011407969.1;Ontology_term=GO:0008150,GO:0003674,GO:0005737;gbkey=CDS;gene=ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302529.1;locus_tag=LLC55_RS06885;product=Holliday junction resolvase RuvX;protein_id=WP_011407969.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1432334 1433281 . + . ID=gene-LLC55_RS06890;Name=LLC55_RS06890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06890;old_locus_tag=LLC55_06890 NZ_CP086200.1 Protein Homology CDS 1432334 1433281 . + 0 ID=cds-WP_011258227.1;Parent=gene-LLC55_RS06890;Dbxref=Genbank:WP_011258227.1;Name=WP_011258227.1;Ontology_term=GO:0006207,GO:0006520,GO:0004070,GO:0016597;gbkey=CDS;go_function=aspartate carbamoyltransferase activity|0004070||IEA,amino acid binding|0016597||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913284.1;locus_tag=LLC55_RS06890;product=aspartate carbamoyltransferase catalytic subunit;protein_id=WP_011258227.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1433341 1433416 . + . ID=gene-LLC55_RS06895;Name=LLC55_RS06895;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06895;old_locus_tag=LLC55_06895 NZ_CP086200.1 cmsearch ncRNA 1433341 1433416 . + . ID=rna-LLC55_RS06895;Parent=gene-LLC55_RS06895;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06895;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1433341 1433416 . + . ID=exon-LLC55_RS06895-1;Parent=rna-LLC55_RS06895;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06895;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1433728 1434162 . + . ID=gene-LLC55_RS06900;Name=LLC55_RS06900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06900;old_locus_tag=LLC55_06900 NZ_CP086200.1 Protein Homology CDS 1433728 1434162 . + 0 ID=cds-WP_011258228.1;Parent=gene-LLC55_RS06900;Dbxref=Genbank:WP_011258228.1;Name=WP_011258228.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159920.1;locus_tag=LLC55_RS06900;product=OsmC family protein;protein_id=WP_011258228.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1434315 1434914 . + . ID=gene-LLC55_RS06905;Name=LLC55_RS06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06905;old_locus_tag=LLC55_06905 NZ_CP086200.1 Protein Homology CDS 1434315 1434914 . + 0 ID=cds-WP_027703692.1;Parent=gene-LLC55_RS06905;Dbxref=Genbank:WP_027703692.1;Name=WP_027703692.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157223.1;locus_tag=LLC55_RS06905;product=glycine zipper 2TM domain-containing protein;protein_id=WP_027703692.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1435200 1436081 . - . ID=gene-LLC55_RS06910;Name=LLC55_RS06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06910;old_locus_tag=LLC55_06910 NZ_CP086200.1 Protein Homology CDS 1435200 1436081 . - 0 ID=cds-WP_011407971.1;Parent=gene-LLC55_RS06910;Dbxref=Genbank:WP_011407971.1;Name=WP_011407971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369373.1;locus_tag=LLC55_RS06910;product=PhzF family phenazine biosynthesis protein;protein_id=WP_011407971.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1436113 1436996 . - . ID=gene-LLC55_RS06915;Name=LLC55_RS06915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06915;old_locus_tag=LLC55_06915;pseudo=true NZ_CP086200.1 Protein Homology CDS 1436113 1436996 . - 0 ID=cds-LLC55_RS06915;Parent=gene-LLC55_RS06915;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375445.1;locus_tag=LLC55_RS06915;product=PhzF family phenazine biosynthesis protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1437179 1439788 . + . ID=gene-LLC55_RS06920;Name=LLC55_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06920;old_locus_tag=LLC55_06920 NZ_CP086200.1 Protein Homology CDS 1437179 1439788 . + 0 ID=cds-WP_011407973.1;Parent=gene-LLC55_RS06920;Dbxref=Genbank:WP_011407973.1;Name=WP_011407973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090660.1;locus_tag=LLC55_RS06920;product=bifunctional aspartate kinase/diaminopimelate decarboxylase;protein_id=WP_011407973.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1439772 1440230 . + . ID=gene-LLC55_RS06925;Name=LLC55_RS06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06925;old_locus_tag=LLC55_06925 NZ_CP086200.1 Protein Homology CDS 1439772 1440230 . + 0 ID=cds-WP_011407974.1;Parent=gene-LLC55_RS06925;Dbxref=Genbank:WP_011407974.1;Name=WP_011407974.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502553.1;locus_tag=LLC55_RS06925;product=hypothetical protein;protein_id=WP_011407974.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1440227 1441582 . + . ID=gene-LLC55_RS06930;Name=murL;gbkey=Gene;gene=murL;gene_biotype=protein_coding;locus_tag=LLC55_RS06930;old_locus_tag=LLC55_06930 NZ_CP086200.1 Protein Homology CDS 1440227 1441582 . + 0 ID=cds-WP_011258235.1;Parent=gene-LLC55_RS06930;Dbxref=Genbank:WP_011258235.1;Name=WP_011258235.1;Ontology_term=GO:0009252,GO:0016855;gbkey=CDS;gene=murL;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258235.1;locus_tag=LLC55_RS06930;product=UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase;protein_id=WP_011258235.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1441563 1442969 . + . ID=gene-LLC55_RS06935;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=LLC55_RS06935;old_locus_tag=LLC55_06935 NZ_CP086200.1 Protein Homology CDS 1441563 1442969 . + 0 ID=cds-WP_011258236.1;Parent=gene-LLC55_RS06935;Dbxref=Genbank:WP_011258236.1;Name=WP_011258236.1;Ontology_term=GO:0009252,GO:0008764;gbkey=CDS;gene=murD;go_function=UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157217.1;locus_tag=LLC55_RS06935;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=WP_011258236.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1443286 1444080 . + . ID=gene-LLC55_RS06940;Name=LLC55_RS06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06940;old_locus_tag=LLC55_06940 NZ_CP086200.1 Protein Homology CDS 1443286 1444080 . + 0 ID=cds-WP_011258237.1;Parent=gene-LLC55_RS06940;Dbxref=Genbank:WP_011258237.1;Name=WP_011258237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502557.1;locus_tag=LLC55_RS06940;product=dienelactone hydrolase family protein;protein_id=WP_011258237.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1444265 1445263 . - . ID=gene-LLC55_RS06945;Name=LLC55_RS06945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06945;old_locus_tag=LLC55_06945 NZ_CP086200.1 Protein Homology CDS 1444265 1445263 . - 0 ID=cds-WP_011258238.1;Parent=gene-LLC55_RS06945;Dbxref=Genbank:WP_011258238.1;Name=WP_011258238.1;Ontology_term=GO:0008299;gbkey=CDS;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966188.1;locus_tag=LLC55_RS06945;product=polyprenyl synthetase family protein;protein_id=WP_011258238.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1445539 1446075 . + . ID=gene-LLC55_RS06950;Name=LLC55_RS06950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06950;old_locus_tag=LLC55_06950 NZ_CP086200.1 Protein Homology CDS 1445539 1446075 . + 0 ID=cds-WP_011258239.1;Parent=gene-LLC55_RS06950;Dbxref=Genbank:WP_011258239.1;Name=WP_011258239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157214.1;locus_tag=LLC55_RS06950;product=single-stranded DNA-binding protein;protein_id=WP_011258239.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1446358 1447905 . - . ID=gene-LLC55_RS06955;Name=LLC55_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06955;old_locus_tag=LLC55_06955 NZ_CP086200.1 Protein Homology CDS 1446358 1447905 . - 0 ID=cds-WP_173340381.1;Parent=gene-LLC55_RS06955;Dbxref=Genbank:WP_173340381.1;Name=WP_173340381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157213.1;locus_tag=LLC55_RS06955;product=sensor domain-containing diguanylate cyclase;protein_id=WP_173340381.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1448136 1449133 . + . ID=gene-LLC55_RS06960;Name=LLC55_RS06960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06960;old_locus_tag=LLC55_06960;pseudo=true NZ_CP086200.1 Protein Homology CDS 1448136 1449133 . + 0 ID=cds-LLC55_RS06960;Parent=gene-LLC55_RS06960;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166271.1;locus_tag=LLC55_RS06960;product=NAD(P)-dependent alcohol dehydrogenase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1449204 1450262 . + . ID=gene-LLC55_RS06965;Name=LLC55_RS06965;end_range=1450262,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06965;old_locus_tag=LLC55_06965;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1449204 1450262 . + 0 ID=cds-LLC55_RS06965;Parent=gene-LLC55_RS06965;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1450262,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS06965;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1450352 1451317 . + . ID=gene-LLC55_RS06970;Name=LLC55_RS06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06970;old_locus_tag=LLC55_06970 NZ_CP086200.1 Protein Homology CDS 1450352 1451317 . + 0 ID=cds-WP_115801880.1;Parent=gene-LLC55_RS06970;Dbxref=Genbank:WP_115801880.1;Name=WP_115801880.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS06970;product=IS1595-like element ISXo5 family transposase;protein_id=WP_115801880.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1451324 1451461 . - . ID=gene-LLC55_RS06975;Name=LLC55_RS06975;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS06975;old_locus_tag=LLC55_06975;partial=true;pseudo=true;start_range=.,1451324 NZ_CP086200.1 Protein Homology CDS 1451324 1451461 . - 0 ID=cds-LLC55_RS06975;Parent=gene-LLC55_RS06975;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112231.1;locus_tag=LLC55_RS06975;partial=true;product=ankyrin repeat domain-containing protein;pseudo=true;start_range=.,1451324;transl_table=11 NZ_CP086200.1 RefSeq gene 1451669 1452373 . + . ID=gene-LLC55_RS06980;Name=LLC55_RS06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06980;old_locus_tag=LLC55_06980 NZ_CP086200.1 Protein Homology CDS 1451669 1452373 . + 0 ID=cds-WP_044757492.1;Parent=gene-LLC55_RS06980;Dbxref=Genbank:WP_044757492.1;Name=WP_044757492.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174244.1;locus_tag=LLC55_RS06980;product=HAD family hydrolase;protein_id=WP_044757492.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1452424 1452500 . - . ID=gene-LLC55_RS06985;Name=LLC55_RS06985;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS06985;old_locus_tag=LLC55_06985 NZ_CP086200.1 cmsearch ncRNA 1452424 1452500 . - . ID=rna-LLC55_RS06985;Parent=gene-LLC55_RS06985;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06985;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1452424 1452500 . - . ID=exon-LLC55_RS06985-1;Parent=rna-LLC55_RS06985;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS06985;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1452911 1453135 . - . ID=gene-LLC55_RS06990;Name=LLC55_RS06990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06990;old_locus_tag=LLC55_06990 NZ_CP086200.1 Protein Homology CDS 1452911 1453135 . - 0 ID=cds-WP_005926176.1;Parent=gene-LLC55_RS06990;Dbxref=Genbank:WP_005926176.1;Name=WP_005926176.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508400.1;locus_tag=LLC55_RS06990;product=CstA-like transporter-associated (seleno)protein;protein_id=WP_005926176.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1453135 1455207 . - . ID=gene-LLC55_RS06995;Name=LLC55_RS06995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS06995;old_locus_tag=LLC55_06995 NZ_CP086200.1 Protein Homology CDS 1453135 1455207 . - 0 ID=cds-WP_011407979.1;Parent=gene-LLC55_RS06995;Dbxref=Genbank:WP_011407979.1;Name=WP_011407979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802008.1;locus_tag=LLC55_RS06995;product=carbon starvation protein A;protein_id=WP_011407979.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1455439 1456296 . + . ID=gene-LLC55_RS07000;Name=LLC55_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07000;old_locus_tag=LLC55_07000 NZ_CP086200.1 Protein Homology CDS 1455439 1456296 . + 0 ID=cds-WP_075242260.1;Parent=gene-LLC55_RS07000;Dbxref=Genbank:WP_075242260.1;Name=WP_075242260.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157199.1;locus_tag=LLC55_RS07000;product=pirin family protein;protein_id=WP_075242260.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1456330 1456785 . + . ID=gene-LLC55_RS07005;Name=LLC55_RS07005;end_range=1456785,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07005;old_locus_tag=LLC55_07005;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1456330 1456785 . + 0 ID=cds-LLC55_RS07005;Parent=gene-LLC55_RS07005;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1456785,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157198.1;locus_tag=LLC55_RS07005;partial=true;product=OsmC family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1456912 1459734 . + . ID=gene-LLC55_RS07010;Name=LLC55_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07010;old_locus_tag=LLC55_07010 NZ_CP086200.1 Protein Homology CDS 1456912 1459734 . + 0 ID=cds-WP_069965089.1;Parent=gene-LLC55_RS07010;Dbxref=Genbank:WP_069965089.1;Name=WP_069965089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407981.1;locus_tag=LLC55_RS07010;product=type VI secretion system Vgr family protein;protein_id=WP_069965089.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1459741 1460649 . + . ID=gene-LLC55_RS07015;Name=LLC55_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07015;old_locus_tag=LLC55_07015 NZ_CP086200.1 Protein Homology CDS 1459741 1460649 . + 0 ID=cds-WP_011407982.1;Parent=gene-LLC55_RS07015;Dbxref=Genbank:WP_011407982.1;Name=WP_011407982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502588.1;locus_tag=LLC55_RS07015;product=DUF4123 domain-containing protein;protein_id=WP_011407982.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1460718 1461296 . + . ID=gene-LLC55_RS07020;Name=LLC55_RS07020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07020;old_locus_tag=LLC55_07020 NZ_CP086200.1 GeneMarkS-2+ CDS 1460718 1461296 . + 0 ID=cds-WP_075241467.1;Parent=gene-LLC55_RS07020;Dbxref=Genbank:WP_075241467.1;Name=WP_075241467.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS07020;product=DUF3304 domain-containing protein;protein_id=WP_075241467.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1461280 1462698 . + . ID=gene-LLC55_RS07025;Name=LLC55_RS07025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07025;old_locus_tag=LLC55_07025 NZ_CP086200.1 Protein Homology CDS 1461280 1462698 . + 0 ID=cds-WP_228329700.1;Parent=gene-LLC55_RS07025;Dbxref=Genbank:WP_228329700.1;Name=WP_228329700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502397.1;locus_tag=LLC55_RS07025;product=DUF2235 domain-containing protein;protein_id=WP_228329700.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1462708 1465131 . + . ID=gene-LLC55_RS07030;Name=LLC55_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07030;old_locus_tag=LLC55_07030 NZ_CP086200.1 Protein Homology CDS 1462708 1465131 . + 0 ID=cds-WP_044757009.1;Parent=gene-LLC55_RS07030;Dbxref=Genbank:WP_044757009.1;Name=WP_044757009.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407986.1;locus_tag=LLC55_RS07030;product=type VI secretion system Vgr family protein;protein_id=WP_044757009.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1465239 1466207 . + . ID=gene-LLC55_RS07035;Name=LLC55_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07035;old_locus_tag=LLC55_07035 NZ_CP086200.1 Protein Homology CDS 1465239 1466207 . + 0 ID=cds-WP_011258802.1-5;Parent=gene-LLC55_RS07035;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS07035;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1466342 1467235 . + . ID=gene-LLC55_RS07040;Name=LLC55_RS07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07040;old_locus_tag=LLC55_07040 NZ_CP086200.1 Protein Homology CDS 1466342 1467235 . + 0 ID=cds-WP_228329701.1;Parent=gene-LLC55_RS07040;Dbxref=Genbank:WP_228329701.1;Name=WP_228329701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258248.1;locus_tag=LLC55_RS07040;product=DUF4123 domain-containing protein;protein_id=WP_228329701.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1467321 1467834 . + . ID=gene-LLC55_RS07045;Name=LLC55_RS07045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07045;old_locus_tag=LLC55_07045;pseudo=true NZ_CP086200.1 Protein Homology CDS 1467321 1467834 . + 0 ID=cds-LLC55_RS07045;Parent=gene-LLC55_RS07045;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502584.1;locus_tag=LLC55_RS07045;product=DUF3304 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1468115 1468777 . + . ID=gene-LLC55_RS07050;Name=LLC55_RS07050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07050;old_locus_tag=LLC55_07050 NZ_CP086200.1 Protein Homology CDS 1468115 1468777 . + 0 ID=cds-WP_228329702.1;Parent=gene-LLC55_RS07050;Dbxref=Genbank:WP_228329702.1;Name=WP_228329702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407989.1;locus_tag=LLC55_RS07050;product=DUF3304 domain-containing protein;protein_id=WP_228329702.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1469088 1469729 . + . ID=gene-LLC55_RS07055;Name=LLC55_RS07055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07055;old_locus_tag=LLC55_07055 NZ_CP086200.1 Protein Homology CDS 1469088 1469729 . + 0 ID=cds-WP_228329703.1;Parent=gene-LLC55_RS07055;Dbxref=Genbank:WP_228329703.1;Name=WP_228329703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502585.1;locus_tag=LLC55_RS07055;product=DUF3304 domain-containing protein;protein_id=WP_228329703.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1469779 1471887 . + . ID=gene-LLC55_RS07060;Name=LLC55_RS07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07060;old_locus_tag=LLC55_07060 NZ_CP086200.1 Protein Homology CDS 1469779 1471887 . + 0 ID=cds-WP_075242346.1;Parent=gene-LLC55_RS07060;Dbxref=Genbank:WP_075242346.1;Name=WP_075242346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407990.1;locus_tag=LLC55_RS07060;product=DUF2235 domain-containing protein;protein_id=WP_075242346.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1471948 1473810 . + . ID=gene-LLC55_RS07065;Name=LLC55_RS07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07065;old_locus_tag=LLC55_07065 NZ_CP086200.1 Protein Homology CDS 1471948 1473810 . + 0 ID=cds-WP_228329704.1;Parent=gene-LLC55_RS07065;Dbxref=Genbank:WP_228329704.1;Name=WP_228329704.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258250.1;locus_tag=LLC55_RS07065;product=type VI secretion system Vgr family protein;protein_id=WP_228329704.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1473817 1474725 . + . ID=gene-LLC55_RS07070;Name=LLC55_RS07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07070;old_locus_tag=LLC55_07070 NZ_CP086200.1 Protein Homology CDS 1473817 1474725 . + 0 ID=cds-WP_011407982.1-2;Parent=gene-LLC55_RS07070;Dbxref=Genbank:WP_011407982.1;Name=WP_011407982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502588.1;locus_tag=LLC55_RS07070;product=DUF4123 domain-containing protein;protein_id=WP_011407982.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1474794 1475342 . + . ID=gene-LLC55_RS07075;Name=LLC55_RS07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07075;old_locus_tag=LLC55_07075 NZ_CP086200.1 GeneMarkS-2+ CDS 1474794 1475342 . + 0 ID=cds-WP_181689598.1;Parent=gene-LLC55_RS07075;Dbxref=Genbank:WP_181689598.1;Name=WP_181689598.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS07075;product=hypothetical protein;protein_id=WP_181689598.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1475353 1476321 . + . ID=gene-LLC55_RS07080;Name=LLC55_RS07080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07080;old_locus_tag=LLC55_07080 NZ_CP086200.1 Protein Homology CDS 1475353 1476321 . + 0 ID=cds-WP_011258803.1-2;Parent=gene-LLC55_RS07080;Dbxref=Genbank:WP_011258803.1;Name=WP_011258803.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS07080;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258803.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1476996 1477229 . + . ID=gene-LLC55_RS07085;Name=LLC55_RS07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07085;old_locus_tag=LLC55_07085 NZ_CP086200.1 Protein Homology CDS 1476996 1477229 . + 0 ID=cds-WP_011258251.1;Parent=gene-LLC55_RS07085;Dbxref=Genbank:WP_011258251.1;Name=WP_011258251.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502589.1;locus_tag=LLC55_RS07085;product=DUF3304 domain-containing protein;protein_id=WP_011258251.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1477226 1477378 . + . ID=gene-LLC55_RS07090;Name=LLC55_RS07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07090;old_locus_tag=LLC55_07090 NZ_CP086200.1 Protein Homology CDS 1477226 1477378 . + 0 ID=cds-WP_011258252.1;Parent=gene-LLC55_RS07090;Dbxref=Genbank:WP_011258252.1;Name=WP_011258252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444346.1;locus_tag=LLC55_RS07090;product=hypothetical protein;protein_id=WP_011258252.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1477450 1478016 . + . ID=gene-LLC55_RS07095;Name=LLC55_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07095;old_locus_tag=LLC55_07095 NZ_CP086200.1 Protein Homology CDS 1477450 1478016 . + 0 ID=cds-WP_011407994.1;Parent=gene-LLC55_RS07095;Dbxref=Genbank:WP_011407994.1;Name=WP_011407994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502591.1;locus_tag=LLC55_RS07095;product=DUF3304 domain-containing protein;protein_id=WP_011407994.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1478013 1478165 . + . ID=gene-LLC55_RS07100;Name=LLC55_RS07100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07100;old_locus_tag=LLC55_07100 NZ_CP086200.1 Protein Homology CDS 1478013 1478165 . + 0 ID=cds-WP_012444346.1;Parent=gene-LLC55_RS07100;Dbxref=Genbank:WP_012444346.1;Name=WP_012444346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444346.1;locus_tag=LLC55_RS07100;product=hypothetical protein;protein_id=WP_012444346.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1478219 1478806 . + . ID=gene-LLC55_RS07105;Name=LLC55_RS07105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07105;old_locus_tag=LLC55_07105 NZ_CP086200.1 Protein Homology CDS 1478219 1478806 . + 0 ID=cds-WP_011407995.1;Parent=gene-LLC55_RS07105;Dbxref=Genbank:WP_011407995.1;Name=WP_011407995.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444350.1;locus_tag=LLC55_RS07105;product=DUF3304 domain-containing protein;protein_id=WP_011407995.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1478803 1478955 . + . ID=gene-LLC55_RS07110;Name=LLC55_RS07110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07110;old_locus_tag=LLC55_07110 NZ_CP086200.1 Protein Homology CDS 1478803 1478955 . + 0 ID=cds-WP_154583424.1;Parent=gene-LLC55_RS07110;Dbxref=Genbank:WP_154583424.1;Name=WP_154583424.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444346.1;locus_tag=LLC55_RS07110;product=hypothetical protein;protein_id=WP_154583424.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1479009 1479593 . + . ID=gene-LLC55_RS07115;Name=LLC55_RS07115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07115;old_locus_tag=LLC55_07115 NZ_CP086200.1 Protein Homology CDS 1479009 1479593 . + 0 ID=cds-WP_011407996.1;Parent=gene-LLC55_RS07115;Dbxref=Genbank:WP_011407996.1;Name=WP_011407996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444350.1;locus_tag=LLC55_RS07115;product=DUF3304 domain-containing protein;protein_id=WP_011407996.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1479590 1481998 . + . ID=gene-LLC55_RS07120;Name=LLC55_RS07120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07120;old_locus_tag=LLC55_07120 NZ_CP086200.1 Protein Homology CDS 1479590 1481998 . + 0 ID=cds-WP_069959784.1;Parent=gene-LLC55_RS07120;Dbxref=Genbank:WP_069959784.1;Name=WP_069959784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502594.1;locus_tag=LLC55_RS07120;product=DUF2235 domain-containing protein;protein_id=WP_069959784.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1482343 1482804 . - . ID=gene-LLC55_RS07125;Name=LLC55_RS07125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07125;old_locus_tag=LLC55_07125 NZ_CP086200.1 Protein Homology CDS 1482343 1482804 . - 0 ID=cds-WP_011407999.1;Parent=gene-LLC55_RS07125;Dbxref=Genbank:WP_011407999.1;Name=WP_011407999.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488124.1;locus_tag=LLC55_RS07125;product=hypothetical protein;protein_id=WP_011407999.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1483051 1483941 . - . ID=gene-LLC55_RS07130;Name=LLC55_RS07130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07130;old_locus_tag=LLC55_07130 NZ_CP086200.1 Protein Homology CDS 1483051 1483941 . - 0 ID=cds-WP_075242347.1;Parent=gene-LLC55_RS07130;Dbxref=Genbank:WP_075242347.1;Name=WP_075242347.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375490.1;locus_tag=LLC55_RS07130;product=pirin family protein;protein_id=WP_075242347.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1484709 1485422 . - . ID=gene-LLC55_RS07135;Name=nfi;gbkey=Gene;gene=nfi;gene_biotype=protein_coding;locus_tag=LLC55_RS07135;old_locus_tag=LLC55_07135 NZ_CP086200.1 Protein Homology CDS 1484709 1485422 . - 0 ID=cds-WP_012444354.1;Parent=gene-LLC55_RS07135;Dbxref=Genbank:WP_012444354.1;Name=WP_012444354.1;Note=cleaves DNA at apurinic or apyrimidinic sites;Ontology_term=GO:0006281,GO:0004519;gbkey=CDS;gene=nfi;go_function=endonuclease activity|0004519||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444354.1;locus_tag=LLC55_RS07135;product=deoxyribonuclease V;protein_id=WP_012444354.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1485526 1486275 . + . ID=gene-LLC55_RS07140;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=LLC55_RS07140;old_locus_tag=LLC55_07140 NZ_CP086200.1 Protein Homology CDS 1485526 1486275 . + 0 ID=cds-WP_011258259.1;Parent=gene-LLC55_RS07140;Dbxref=Genbank:WP_011258259.1;Name=WP_011258259.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmA;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167506.1;locus_tag=LLC55_RS07140;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_011258259.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1486470 1486545 . - . ID=gene-LLC55_RS07145;Name=LLC55_RS07145;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS07145;old_locus_tag=LLC55_07145 NZ_CP086200.1 cmsearch ncRNA 1486470 1486545 . - . ID=rna-LLC55_RS07145;Parent=gene-LLC55_RS07145;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS07145;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1486470 1486545 . - . ID=exon-LLC55_RS07145-1;Parent=rna-LLC55_RS07145;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS07145;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1486633 1486887 . + . ID=gene-LLC55_RS07150;Name=LLC55_RS07150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07150;old_locus_tag=LLC55_07150 NZ_CP086200.1 Protein Homology CDS 1486633 1486887 . + 0 ID=cds-WP_228329738.1;Parent=gene-LLC55_RS07150;Dbxref=Genbank:WP_228329738.1;Name=WP_228329738.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112229.1;locus_tag=LLC55_RS07150;product=hypothetical protein;protein_id=WP_228329738.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1487220 1489277 . + . ID=gene-LLC55_RS07155;Name=LLC55_RS07155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07155;old_locus_tag=LLC55_07155 NZ_CP086200.1 Protein Homology CDS 1487220 1489277 . + 0 ID=cds-WP_011408003.1;Parent=gene-LLC55_RS07155;Dbxref=Genbank:WP_011408003.1;Name=WP_011408003.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408003.1;locus_tag=LLC55_RS07155;product=M13 family peptidase;protein_id=WP_011408003.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1489496 1491056 . + . ID=gene-LLC55_RS07160;Name=LLC55_RS07160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07160;old_locus_tag=LLC55_07160;pseudo=true NZ_CP086200.1 Protein Homology CDS 1489496 1491056 . + 0 ID=cds-LLC55_RS07160;Parent=gene-LLC55_RS07160;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051886.1;locus_tag=LLC55_RS07160;product=phospholipase D family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1491225 1492364 . - . ID=gene-LLC55_RS07165;Name=LLC55_RS07165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07165;old_locus_tag=LLC55_07165 NZ_CP086200.1 Protein Homology CDS 1491225 1492364 . - 0 ID=cds-WP_178383454.1;Parent=gene-LLC55_RS07165;Dbxref=Genbank:WP_178383454.1;Name=WP_178383454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971662.1;locus_tag=LLC55_RS07165;product=chemotaxis response regulator protein-glutamate methylesterase;protein_id=WP_178383454.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1492361 1493167 . - . ID=gene-LLC55_RS07170;Name=LLC55_RS07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07170;old_locus_tag=LLC55_07170 NZ_CP086200.1 Protein Homology CDS 1492361 1493167 . - 0 ID=cds-WP_012444362.1;Parent=gene-LLC55_RS07170;Dbxref=Genbank:WP_012444362.1;Name=WP_012444362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301146.1;locus_tag=LLC55_RS07170;product=protein-glutamate O-methyltransferase CheR;protein_id=WP_012444362.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1493172 1494455 . - . ID=gene-LLC55_RS07175;Name=LLC55_RS07175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07175;old_locus_tag=LLC55_07175 NZ_CP086200.1 Protein Homology CDS 1493172 1494455 . - 0 ID=cds-WP_069959785.1;Parent=gene-LLC55_RS07175;Dbxref=Genbank:WP_069959785.1;Name=WP_069959785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375512.1;locus_tag=LLC55_RS07175;product=EAL domain-containing response regulator;protein_id=WP_069959785.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1494482 1494997 . - . ID=gene-LLC55_RS07180;Name=LLC55_RS07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07180;old_locus_tag=LLC55_07180 NZ_CP086200.1 Protein Homology CDS 1494482 1494997 . - 0 ID=cds-WP_069963839.1;Parent=gene-LLC55_RS07180;Dbxref=Genbank:WP_069963839.1;Name=WP_069963839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502619.1;locus_tag=LLC55_RS07180;product=chemotaxis protein CheW;protein_id=WP_069963839.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1495008 1497164 . - . ID=gene-LLC55_RS07185;Name=LLC55_RS07185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07185;old_locus_tag=LLC55_07185 NZ_CP086200.1 Protein Homology CDS 1495008 1497164 . - 0 ID=cds-WP_069959786.1;Parent=gene-LLC55_RS07185;Dbxref=Genbank:WP_069959786.1;Name=WP_069959786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971660.1;locus_tag=LLC55_RS07185;product=methyl-accepting chemotaxis protein;protein_id=WP_069959786.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1497232 1499229 . - . ID=gene-LLC55_RS07190;Name=LLC55_RS07190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07190;old_locus_tag=LLC55_07190 NZ_CP086200.1 Protein Homology CDS 1497232 1499229 . - 0 ID=cds-WP_011408009.1;Parent=gene-LLC55_RS07190;Dbxref=Genbank:WP_011408009.1;Name=WP_011408009.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576106.1;locus_tag=LLC55_RS07190;product=chemotaxis protein CheA;protein_id=WP_011408009.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1499248 1499577 . - . ID=gene-LLC55_RS07195;Name=LLC55_RS07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07195;old_locus_tag=LLC55_07195 NZ_CP086200.1 Protein Homology CDS 1499248 1499577 . - 0 ID=cds-WP_011258268.1;Parent=gene-LLC55_RS07195;Dbxref=Genbank:WP_011258268.1;Name=WP_011258268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016905011.1;locus_tag=LLC55_RS07195;product=STAS domain-containing protein;protein_id=WP_011258268.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1499617 1499835 . + . ID=gene-LLC55_RS07200;Name=LLC55_RS07200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07200;old_locus_tag=LLC55_07200 NZ_CP086200.1 GeneMarkS-2+ CDS 1499617 1499835 . + 0 ID=cds-WP_125168745.1;Parent=gene-LLC55_RS07200;Dbxref=Genbank:WP_125168745.1;Name=WP_125168745.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS07200;product=hypothetical protein;protein_id=WP_125168745.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1500067 1503531 . - . ID=gene-LLC55_RS07205;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=LLC55_RS07205;old_locus_tag=LLC55_07205 NZ_CP086200.1 Protein Homology CDS 1500067 1503531 . - 0 ID=cds-WP_044756996.1;Parent=gene-LLC55_RS07205;Dbxref=Genbank:WP_044756996.1;Name=WP_044756996.1;Ontology_term=GO:0006281,GO:0003676,GO:0003684,GO:0005524;gbkey=CDS;gene=mfd;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090633.1;locus_tag=LLC55_RS07205;product=transcription-repair coupling factor;protein_id=WP_044756996.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1503934 1504476 . - . ID=gene-LLC55_RS07210;Name=LLC55_RS07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07210;old_locus_tag=LLC55_07210 NZ_CP086200.1 Protein Homology CDS 1503934 1504476 . - 0 ID=cds-WP_011258270.1;Parent=gene-LLC55_RS07210;Dbxref=Genbank:WP_011258270.1;Name=WP_011258270.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301140.1;locus_tag=LLC55_RS07210;product=GNAT family N-acetyltransferase;protein_id=WP_011258270.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1504888 1505796 . - . ID=gene-LLC55_RS07215;Name=rlmJ;gbkey=Gene;gene=rlmJ;gene_biotype=protein_coding;locus_tag=LLC55_RS07215;old_locus_tag=LLC55_07215 NZ_CP086200.1 Protein Homology CDS 1504888 1505796 . - 0 ID=cds-WP_011408011.1;Parent=gene-LLC55_RS07215;Dbxref=Genbank:WP_011408011.1;Name=WP_011408011.1;Ontology_term=GO:0070475,GO:0008649;gbkey=CDS;gene=rlmJ;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=rRNA base methylation|0070475||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919277.1;locus_tag=LLC55_RS07215;product=23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ;protein_id=WP_011408011.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1505963 1506073 . + . ID=gene-LLC55_RS07220;Name=LLC55_RS07220;end_range=1506073,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07220;old_locus_tag=LLC55_07220;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1505963 1506073 . + 0 ID=cds-LLC55_RS07220;Parent=gene-LLC55_RS07220;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1506073,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157179.1;locus_tag=LLC55_RS07220;partial=true;product=two-component system response regulator CreB;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1506142 1506940 . - . ID=gene-LLC55_RS07225;Name=LLC55_RS07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07225;old_locus_tag=LLC55_07225 NZ_CP086200.1 Protein Homology CDS 1506669 1506940 . - 0 ID=cds-WP_094187763.1;Parent=gene-LLC55_RS07225;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS07225;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1506142 1506670 . - 1 ID=cds-WP_094187763.1;Parent=gene-LLC55_RS07225;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS07225;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1507111 1507803 . + . ID=gene-LLC55_RS07230;Name=LLC55_RS07230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07230;old_locus_tag=LLC55_07230;partial=true;pseudo=true;start_range=.,1507111 NZ_CP086200.1 Protein Homology CDS 1507111 1507803 . + 0 ID=cds-LLC55_RS07230;Parent=gene-LLC55_RS07230;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090630.1;locus_tag=LLC55_RS07230;partial=true;product=ATP-binding protein;pseudo=true;start_range=.,1507111;transl_table=11 NZ_CP086200.1 RefSeq gene 1507959 1508994 . + . ID=gene-LLC55_RS07235;Name=LLC55_RS07235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07235;old_locus_tag=LLC55_07235 NZ_CP086200.1 Protein Homology CDS 1507959 1508585 . + 0 ID=cds-WP_109181900.1;Parent=gene-LLC55_RS07235;Dbxref=Genbank:WP_109181900.1;Name=WP_109181900.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259143.1;locus_tag=LLC55_RS07235;product=IS630 family transposase;protein_id=WP_109181900.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1508587 1508994 . + 0 ID=cds-WP_109181900.1;Parent=gene-LLC55_RS07235;Dbxref=Genbank:WP_109181900.1;Name=WP_109181900.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259143.1;locus_tag=LLC55_RS07235;product=IS630 family transposase;protein_id=WP_109181900.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1509014 1509826 . - . ID=gene-LLC55_RS07240;Name=LLC55_RS07240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07240;old_locus_tag=LLC55_07240 NZ_CP086200.1 Protein Homology CDS 1509014 1509826 . - 0 ID=cds-WP_011258276.1;Parent=gene-LLC55_RS07240;Dbxref=Genbank:WP_011258276.1;Name=WP_011258276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051873.1;locus_tag=LLC55_RS07240;product=C1 family peptidase;protein_id=WP_011258276.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1510562 1510945 . + . ID=gene-LLC55_RS07245;Name=LLC55_RS07245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07245;old_locus_tag=LLC55_07245 NZ_CP086200.1 Protein Homology CDS 1510562 1510945 . + 0 ID=cds-WP_011408014.1;Parent=gene-LLC55_RS07245;Dbxref=Genbank:WP_011408014.1;Name=WP_011408014.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408014.1;locus_tag=LLC55_RS07245;product=inner membrane CreD family protein;protein_id=WP_011408014.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1510926 1511144 . + . ID=gene-LLC55_RS07250;Name=LLC55_RS07250;end_range=1511144,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07250;old_locus_tag=LLC55_07250;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1510926 1511144 . + 0 ID=cds-LLC55_RS07250;Parent=gene-LLC55_RS07250;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1511144,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348063.1;locus_tag=LLC55_RS07250;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1511113 1512114 . + . ID=gene-LLC55_RS07255;Name=LLC55_RS07255;end_range=1512114,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07255;old_locus_tag=LLC55_07255;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1511113 1512114 . + 0 ID=cds-LLC55_RS07255;Parent=gene-LLC55_RS07255;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=1512114,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=LLC55_RS07255;partial=true;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1512277 1513335 . - . ID=gene-LLC55_RS07260;Name=LLC55_RS07260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07260;old_locus_tag=LLC55_07260 NZ_CP086200.1 Protein Homology CDS 1512277 1513335 . - 0 ID=cds-WP_228329705.1;Parent=gene-LLC55_RS07260;Dbxref=Genbank:WP_228329705.1;Name=WP_228329705.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408016.1;locus_tag=LLC55_RS07260;product=IS630 family transposase;protein_id=WP_228329705.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1513396 1514208 . - . ID=gene-LLC55_RS07265;Name=LLC55_RS07265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07265;old_locus_tag=LLC55_07265 NZ_CP086200.1 Protein Homology CDS 1513396 1514208 . - 0 ID=cds-WP_011408017.1;Parent=gene-LLC55_RS07265;Dbxref=Genbank:WP_011408017.1;Name=WP_011408017.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157176.1;locus_tag=LLC55_RS07265;product=C1 family peptidase;protein_id=WP_011408017.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1514724 1515107 . + . ID=gene-LLC55_RS07270;Name=LLC55_RS07270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07270;old_locus_tag=LLC55_07270 NZ_CP086200.1 Protein Homology CDS 1514724 1515107 . + 0 ID=cds-WP_011408018.1;Parent=gene-LLC55_RS07270;Dbxref=Genbank:WP_011408018.1;Name=WP_011408018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408014.1;locus_tag=LLC55_RS07270;product=inner membrane CreD family protein;protein_id=WP_011408018.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1515239 1516240 . + . ID=gene-LLC55_RS07275;Name=LLC55_RS07275;end_range=1516240,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07275;old_locus_tag=LLC55_07275;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1515239 1516240 . + 0 ID=cds-LLC55_RS07275;Parent=gene-LLC55_RS07275;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=1516240,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=LLC55_RS07275;partial=true;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1516433 1517245 . - . ID=gene-LLC55_RS07280;Name=LLC55_RS07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07280;old_locus_tag=LLC55_07280 NZ_CP086200.1 Protein Homology CDS 1516433 1517245 . - 0 ID=cds-WP_011408020.1;Parent=gene-LLC55_RS07280;Dbxref=Genbank:WP_011408020.1;Name=WP_011408020.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051873.1;locus_tag=LLC55_RS07280;product=C1 family peptidase;protein_id=WP_011408020.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1517500 1518063 . + . ID=gene-LLC55_RS07285;Name=LLC55_RS07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07285;old_locus_tag=LLC55_07285 NZ_CP086200.1 Protein Homology CDS 1517500 1518063 . + 0 ID=cds-WP_103073530.1;Parent=gene-LLC55_RS07285;Dbxref=Genbank:WP_103073530.1;Name=WP_103073530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576094.1;locus_tag=LLC55_RS07285;product=GNAT family acetyltransferase;protein_id=WP_103073530.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1518181 1518357 . + . ID=gene-LLC55_RS07290;Name=LLC55_RS07290;end_range=1518357,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07290;old_locus_tag=LLC55_07290;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1518181 1518357 . + 0 ID=cds-LLC55_RS07290;Parent=gene-LLC55_RS07290;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1518357,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444381.1;locus_tag=LLC55_RS07290;partial=true;product=nitrilase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1518362 1519318 . - . ID=gene-LLC55_RS07295;Name=LLC55_RS07295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07295;old_locus_tag=LLC55_07295 NZ_CP086200.1 Protein Homology CDS 1518362 1519318 . - 0 ID=cds-WP_041181905.1;Parent=gene-LLC55_RS07295;Dbxref=Genbank:WP_041181905.1;Name=WP_041181905.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS07295;product=IS30-like element IS1112a family transposase;protein_id=WP_041181905.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1519407 1520123 . + . ID=gene-LLC55_RS07300;Name=LLC55_RS07300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07300;old_locus_tag=LLC55_07300;partial=true;pseudo=true;start_range=.,1519407 NZ_CP086200.1 Protein Homology CDS 1519407 1520123 . + 0 ID=cds-LLC55_RS07300;Parent=gene-LLC55_RS07300;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444381.1;locus_tag=LLC55_RS07300;partial=true;product=nitrilase;pseudo=true;start_range=.,1519407;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1520145 1521256 . + . ID=gene-LLC55_RS07305;Name=LLC55_RS07305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07305;old_locus_tag=LLC55_07305;pseudo=true NZ_CP086200.1 Protein Homology CDS 1520145 1521256 . + 0 ID=cds-LLC55_RS07305;Parent=gene-LLC55_RS07305;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090626.1;locus_tag=LLC55_RS07305;product=DUF3616 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1521325 1522728 . + . ID=gene-LLC55_RS07310;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=LLC55_RS07310;old_locus_tag=LLC55_07310 NZ_CP086200.1 Protein Homology CDS 1521325 1522728 . + 0 ID=cds-WP_011258289.1;Parent=gene-LLC55_RS07310;Dbxref=Genbank:WP_011258289.1;Name=WP_011258289.1;Ontology_term=GO:0006424,GO:0004818,GO:0009332;gbkey=CDS;gene=gltX;go_component=glutamate-tRNA ligase complex|0009332||IEA;go_function=glutamate-tRNA ligase activity|0004818||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237481.1;locus_tag=LLC55_RS07310;product=glutamate--tRNA ligase;protein_id=WP_011258289.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1522742 1523248 . + . ID=gene-LLC55_RS07315;Name=LLC55_RS07315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07315;old_locus_tag=LLC55_07315 NZ_CP086200.1 Protein Homology CDS 1522742 1523248 . + 0 ID=cds-WP_011408024.1;Parent=gene-LLC55_RS07315;Dbxref=Genbank:WP_011408024.1;Name=WP_011408024.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157169.1;locus_tag=LLC55_RS07315;product=transcriptional repressor;protein_id=WP_011408024.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1523436 1523512 . - . ID=gene-LLC55_RS07320;Name=LLC55_RS07320;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS07320;old_locus_tag=LLC55_07320 NZ_CP086200.1 cmsearch ncRNA 1523436 1523512 . - . ID=rna-LLC55_RS07320;Parent=gene-LLC55_RS07320;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS07320;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1523436 1523512 . - . ID=exon-LLC55_RS07320-1;Parent=rna-LLC55_RS07320;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS07320;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1523654 1524112 . + . ID=gene-LLC55_RS07325;Name=LLC55_RS07325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07325;old_locus_tag=LLC55_07325 NZ_CP086200.1 Protein Homology CDS 1523654 1524112 . + 0 ID=cds-WP_011408025.1;Parent=gene-LLC55_RS07325;Dbxref=Genbank:WP_011408025.1;Name=WP_011408025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157164.1;locus_tag=LLC55_RS07325;product=cupin domain-containing protein;protein_id=WP_011408025.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1524248 1524667 . - . ID=gene-LLC55_RS07330;Name=LLC55_RS07330;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07330;old_locus_tag=LLC55_07330;partial=true;pseudo=true;start_range=.,1524248 NZ_CP086200.1 Protein Homology CDS 1524248 1524667 . - 0 ID=cds-LLC55_RS07330;Parent=gene-LLC55_RS07330;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463427.1;locus_tag=LLC55_RS07330;partial=true;product=AraC family transcriptional regulator;pseudo=true;start_range=.,1524248;transl_table=11 NZ_CP086200.1 RefSeq gene 1524890 1525093 . + . ID=gene-LLC55_RS07335;Name=LLC55_RS07335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07335;old_locus_tag=LLC55_07335 NZ_CP086200.1 Protein Homology CDS 1524890 1525093 . + 0 ID=cds-WP_011258291.1;Parent=gene-LLC55_RS07335;Dbxref=Genbank:WP_011258291.1;Name=WP_011258291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488570.1;locus_tag=LLC55_RS07335;product=hypothetical protein;protein_id=WP_011258291.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1525109 1525273 . + . ID=gene-LLC55_RS07340;Name=LLC55_RS07340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07340;old_locus_tag=LLC55_07340;partial=true;pseudo=true;start_range=.,1525109 NZ_CP086200.1 Protein Homology CDS 1525109 1525273 . + 0 ID=cds-LLC55_RS07340;Parent=gene-LLC55_RS07340;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS07340;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,1525109;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1525279 1526226 . - . ID=gene-LLC55_RS07345;Name=LLC55_RS07345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07345;old_locus_tag=LLC55_07345;partial=true;pseudo=true;start_range=.,1525279 NZ_CP086200.1 Protein Homology CDS 1525279 1526226 . - 0 ID=cds-LLC55_RS07345;Parent=gene-LLC55_RS07345;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS07345;partial=true;product=IS5 family transposase;pseudo=true;start_range=.,1525279;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1526348 1526542 . - . ID=gene-LLC55_RS07350;Name=LLC55_RS07350;end_range=1526542,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07350;old_locus_tag=LLC55_07350;partial=true;pseudo=true;start_range=.,1526348 NZ_CP086200.1 Protein Homology CDS 1526348 1526542 . - 0 ID=cds-LLC55_RS07350;Parent=gene-LLC55_RS07350;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1526542,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_022557821.1;locus_tag=LLC55_RS07350;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,1526348;transl_table=11 NZ_CP086200.1 RefSeq gene 1526655 1527140 . - . ID=gene-LLC55_RS07355;Name=LLC55_RS07355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07355;old_locus_tag=LLC55_07355 NZ_CP086200.1 Protein Homology CDS 1526655 1527140 . - 0 ID=cds-WP_011258293.1;Parent=gene-LLC55_RS07355;Dbxref=Genbank:WP_011258293.1;Name=WP_011258293.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155733.1;locus_tag=LLC55_RS07355;product=DUF456 domain-containing protein;protein_id=WP_011258293.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1527368 1527583 . + . ID=gene-LLC55_RS07360;Name=LLC55_RS07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07360;old_locus_tag=LLC55_07360 NZ_CP086200.1 Protein Homology CDS 1527368 1527583 . + 0 ID=cds-WP_011258294.1;Parent=gene-LLC55_RS07360;Dbxref=Genbank:WP_011258294.1;Name=WP_011258294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483561.1;locus_tag=LLC55_RS07360;product=cold-shock protein;protein_id=WP_011258294.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1527834 1528313 . - . ID=gene-LLC55_RS07365;Name=LLC55_RS07365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07365;old_locus_tag=LLC55_07365 NZ_CP086200.1 Protein Homology CDS 1527834 1528313 . - 0 ID=cds-WP_011408030.1;Parent=gene-LLC55_RS07365;Dbxref=Genbank:WP_011408030.1;Name=WP_011408030.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303254.1;locus_tag=LLC55_RS07365;product=glycine zipper 2TM domain-containing protein;protein_id=WP_011408030.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1528445 1528873 . - . ID=gene-LLC55_RS07370;Name=LLC55_RS07370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07370;old_locus_tag=LLC55_07370 NZ_CP086200.1 Protein Homology CDS 1528445 1528873 . - 0 ID=cds-WP_011408031.1;Parent=gene-LLC55_RS07370;Dbxref=Genbank:WP_011408031.1;Name=WP_011408031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966688.1;locus_tag=LLC55_RS07370;product=cytochrome c;protein_id=WP_011408031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1528946 1529776 . + . ID=gene-LLC55_RS07375;Name=LLC55_RS07375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07375;old_locus_tag=LLC55_07375 NZ_CP086200.1 Protein Homology CDS 1528946 1529776 . + 0 ID=cds-WP_011258297.1;Parent=gene-LLC55_RS07375;Dbxref=Genbank:WP_011258297.1;Name=WP_011258297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849525.1;locus_tag=LLC55_RS07375;product=tRNA threonylcarbamoyladenosine dehydratase;protein_id=WP_011258297.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1529838 1530605 . - . ID=gene-LLC55_RS07380;Name=LLC55_RS07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07380;old_locus_tag=LLC55_07380 NZ_CP086200.1 Protein Homology CDS 1529838 1530605 . - 0 ID=cds-WP_011408032.1;Parent=gene-LLC55_RS07380;Dbxref=Genbank:WP_011408032.1;Name=WP_011408032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444390.1;locus_tag=LLC55_RS07380;product=TatD family hydrolase;protein_id=WP_011408032.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1530605 1530820 . - . ID=gene-LLC55_RS07385;Name=LLC55_RS07385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07385;old_locus_tag=LLC55_07385 NZ_CP086200.1 Protein Homology CDS 1530605 1530820 . - 0 ID=cds-WP_011258299.1;Parent=gene-LLC55_RS07385;Dbxref=Genbank:WP_011258299.1;Name=WP_011258299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902710.1;locus_tag=LLC55_RS07385;product=hypothetical protein;protein_id=WP_011258299.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1530966 1531757 . + . ID=gene-LLC55_RS07390;Name=LLC55_RS07390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07390;old_locus_tag=LLC55_07390 NZ_CP086200.1 Protein Homology CDS 1530966 1531757 . + 0 ID=cds-WP_011408033.1;Parent=gene-LLC55_RS07390;Dbxref=Genbank:WP_011408033.1;Name=WP_011408033.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161798.1;locus_tag=LLC55_RS07390;product=glycine zipper 2TM domain-containing protein;protein_id=WP_011408033.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1531903 1533078 . + . ID=gene-LLC55_RS07395;Name=LLC55_RS07395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07395;old_locus_tag=LLC55_07395 NZ_CP086200.1 Protein Homology CDS 1531903 1533078 . + 0 ID=cds-WP_027704134.1;Parent=gene-LLC55_RS07395;Dbxref=Genbank:WP_027704134.1;Name=WP_027704134.1;Ontology_term=GO:0016627,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988347.1;locus_tag=LLC55_RS07395;product=acyl-CoA dehydrogenase family protein;protein_id=WP_027704134.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1533160 1535186 . + . ID=gene-LLC55_RS07400;Name=LLC55_RS07400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07400;old_locus_tag=LLC55_07400;pseudo=true NZ_CP086200.1 Protein Homology CDS 1533160 1535186 . + 0 ID=cds-LLC55_RS07400;Parent=gene-LLC55_RS07400;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171542.1;locus_tag=LLC55_RS07400;product=DUF3857 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1535312 1535950 . + . ID=gene-LLC55_RS07405;Name=LLC55_RS07405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07405;old_locus_tag=LLC55_07405 NZ_CP086200.1 Protein Homology CDS 1535312 1535950 . + 0 ID=cds-WP_027704133.1;Parent=gene-LLC55_RS07405;Dbxref=Genbank:WP_027704133.1;Name=WP_027704133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966694.1;locus_tag=LLC55_RS07405;product=glutathione S-transferase family protein;protein_id=WP_027704133.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1536126 1538066 . + . ID=gene-LLC55_RS07410;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=LLC55_RS07410;old_locus_tag=LLC55_07410 NZ_CP086200.1 Protein Homology CDS 1536126 1538066 . + 0 ID=cds-WP_011258305.1;Parent=gene-LLC55_RS07410;Dbxref=Genbank:WP_011258305.1;Name=WP_011258305.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089787.1;locus_tag=LLC55_RS07410;product=asparagine synthase (glutamine-hydrolyzing);protein_id=WP_011258305.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1538283 1538837 . + . ID=gene-LLC55_RS07415;Name=LLC55_RS07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07415;old_locus_tag=LLC55_07415 NZ_CP086200.1 Protein Homology CDS 1538283 1538837 . + 0 ID=cds-WP_011258306.1;Parent=gene-LLC55_RS07415;Dbxref=Genbank:WP_011258306.1;Name=WP_011258306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972091.1;locus_tag=LLC55_RS07415;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_011258306.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1539059 1540489 . + . ID=gene-LLC55_RS07420;Name=LLC55_RS07420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07420;old_locus_tag=LLC55_07420 NZ_CP086200.1 Protein Homology CDS 1539059 1540489 . + 0 ID=cds-WP_011408037.1;Parent=gene-LLC55_RS07420;Dbxref=Genbank:WP_011408037.1;Name=WP_011408037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006377195.1;locus_tag=LLC55_RS07420;product=replicative DNA helicase;protein_id=WP_011408037.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1540592 1542010 . + . ID=gene-LLC55_RS07425;Name=LLC55_RS07425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07425;old_locus_tag=LLC55_07425 NZ_CP086200.1 Protein Homology CDS 1540592 1542010 . + 0 ID=cds-WP_012444398.1;Parent=gene-LLC55_RS07425;Dbxref=Genbank:WP_012444398.1;Name=WP_012444398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113227.1;locus_tag=LLC55_RS07425;product=deoxyribodipyrimidine photo-lyase;protein_id=WP_012444398.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1542014 1542090 . - . ID=gene-LLC55_RS07430;Name=LLC55_RS07430;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS07430;old_locus_tag=LLC55_07430 NZ_CP086200.1 cmsearch ncRNA 1542014 1542090 . - . ID=rna-LLC55_RS07430;Parent=gene-LLC55_RS07430;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS07430;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1542014 1542090 . - . ID=exon-LLC55_RS07430-1;Parent=rna-LLC55_RS07430;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS07430;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1542427 1543152 . + . ID=gene-LLC55_RS07435;Name=LLC55_RS07435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07435;old_locus_tag=LLC55_07435 NZ_CP086200.1 Protein Homology CDS 1542427 1543152 . + 0 ID=cds-WP_011258309.1;Parent=gene-LLC55_RS07435;Dbxref=Genbank:WP_011258309.1;Name=WP_011258309.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155745.1;locus_tag=LLC55_RS07435;product=OmpA family protein;protein_id=WP_011258309.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1543326 1543661 . + . ID=gene-LLC55_RS07440;Name=LLC55_RS07440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07440;old_locus_tag=LLC55_07440;partial=true;pseudo=true;start_range=.,1543326 NZ_CP086200.1 Protein Homology CDS 1543326 1543661 . + 0 ID=cds-LLC55_RS07440;Parent=gene-LLC55_RS07440;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483598.1;locus_tag=LLC55_RS07440;partial=true;product=SDR family oxidoreductase;pseudo=true;start_range=.,1543326;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1543713 1544667 . + . ID=gene-LLC55_RS07445;Name=LLC55_RS07445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07445;old_locus_tag=LLC55_07445;pseudo=true NZ_CP086200.1 Protein Homology CDS 1543713 1544667 . + 0 ID=cds-LLC55_RS07445;Parent=gene-LLC55_RS07445;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_082322974.1;locus_tag=LLC55_RS07445;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1544911 1547292 . - . ID=gene-LLC55_RS07450;Name=LLC55_RS07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07450;old_locus_tag=LLC55_07450 NZ_CP086200.1 Protein Homology CDS 1544911 1547292 . - 0 ID=cds-WP_012444404.1;Parent=gene-LLC55_RS07450;Dbxref=Genbank:WP_012444404.1;Name=WP_012444404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348048.1;locus_tag=LLC55_RS07450;product=TonB-dependent receptor;protein_id=WP_012444404.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1547683 1549720 . - . ID=gene-LLC55_RS07455;Name=LLC55_RS07455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07455;old_locus_tag=LLC55_07455;pseudo=true NZ_CP086200.1 Protein Homology CDS 1547683 1549720 . - 0 ID=cds-LLC55_RS07455;Parent=gene-LLC55_RS07455;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005998312.1;locus_tag=LLC55_RS07455;product=TonB-dependent receptor;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1549921 1550331 . + . ID=gene-LLC55_RS07460;Name=LLC55_RS07460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07460;old_locus_tag=LLC55_07460 NZ_CP086200.1 Protein Homology CDS 1549921 1550331 . + 0 ID=cds-WP_011258314.1;Parent=gene-LLC55_RS07460;Dbxref=Genbank:WP_011258314.1;Name=WP_011258314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366931.1;locus_tag=LLC55_RS07460;product=MerC domain-containing protein;protein_id=WP_011258314.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1550631 1550813 . + . ID=gene-LLC55_RS07465;Name=LLC55_RS07465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07465;old_locus_tag=LLC55_07465 NZ_CP086200.1 Protein Homology CDS 1550631 1550813 . + 0 ID=cds-WP_011408042.1;Parent=gene-LLC55_RS07465;Dbxref=Genbank:WP_011408042.1;Name=WP_011408042.1;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487537.1;locus_tag=LLC55_RS07465;product=30S ribosomal protein THX;protein_id=WP_011408042.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1550946 1551986 . - . ID=gene-LLC55_RS07470;Name=LLC55_RS07470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07470;old_locus_tag=LLC55_07470 NZ_CP086200.1 Protein Homology CDS 1550946 1551986 . - 0 ID=cds-WP_011258316.1;Parent=gene-LLC55_RS07470;Dbxref=Genbank:WP_011258316.1;Name=WP_011258316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377437.1;locus_tag=LLC55_RS07470;product=zinc-dependent alcohol dehydrogenase family protein;protein_id=WP_011258316.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1552059 1553504 . - . ID=gene-LLC55_RS07475;Name=LLC55_RS07475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07475;old_locus_tag=LLC55_07475 NZ_CP086200.1 Protein Homology CDS 1552059 1553504 . - 0 ID=cds-WP_011258317.1;Parent=gene-LLC55_RS07475;Dbxref=Genbank:WP_011258317.1;Name=WP_011258317.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302096.1;locus_tag=LLC55_RS07475;product=chloride channel protein;protein_id=WP_011258317.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1553631 1554785 . - . ID=gene-LLC55_RS07480;Name=LLC55_RS07480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07480;old_locus_tag=LLC55_07480 NZ_CP086200.1 Protein Homology CDS 1553631 1554785 . - 0 ID=cds-WP_228329706.1;Parent=gene-LLC55_RS07480;Dbxref=Genbank:WP_228329706.1;Name=WP_228329706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444408.1;locus_tag=LLC55_RS07480;product=ectonucleotide pyrophosphatase/phosphodiesterase;protein_id=WP_228329706.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1554772 1554936 . + . ID=gene-LLC55_RS07485;Name=LLC55_RS07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07485;old_locus_tag=LLC55_07485 NZ_CP086200.1 Protein Homology CDS 1554772 1554936 . + 0 ID=cds-WP_011258318.1;Parent=gene-LLC55_RS07485;Dbxref=Genbank:WP_011258318.1;Name=WP_011258318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912868.1;locus_tag=LLC55_RS07485;product=hypothetical protein;protein_id=WP_011258318.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1555186 1555731 . - . ID=gene-LLC55_RS07490;Name=LLC55_RS07490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07490;old_locus_tag=LLC55_07490 NZ_CP086200.1 Protein Homology CDS 1555186 1555731 . - 0 ID=cds-WP_012444410.1;Parent=gene-LLC55_RS07490;Dbxref=Genbank:WP_012444410.1;Name=WP_012444410.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348043.1;locus_tag=LLC55_RS07490;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=WP_012444410.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1555728 1557191 . - . ID=gene-LLC55_RS07495;Name=LLC55_RS07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07495;old_locus_tag=LLC55_07495 NZ_CP086200.1 Protein Homology CDS 1555728 1557191 . - 0 ID=cds-WP_075242211.1;Parent=gene-LLC55_RS07495;Dbxref=Genbank:WP_075242211.1;Name=WP_075242211.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301296.1;locus_tag=LLC55_RS07495;product=helix-turn-helix domain-containing protein;protein_id=WP_075242211.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1557338 1558575 . + . ID=gene-LLC55_RS07500;Name=LLC55_RS07500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07500;old_locus_tag=LLC55_07500;pseudo=true NZ_CP086200.1 Protein Homology CDS 1557338 1558575 . + 0 ID=cds-LLC55_RS07500;Parent=gene-LLC55_RS07500;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929315.1;locus_tag=LLC55_RS07500;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1558652 1558906 . + . ID=gene-LLC55_RS07505;Name=LLC55_RS07505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07505;old_locus_tag=LLC55_07505 NZ_CP086200.1 Protein Homology CDS 1558652 1558906 . + 0 ID=cds-WP_011258323.1;Parent=gene-LLC55_RS07505;Dbxref=Genbank:WP_011258323.1;Name=WP_011258323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377450.1;locus_tag=LLC55_RS07505;product=hypothetical protein;protein_id=WP_011258323.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1559309 1559842 . + . ID=gene-LLC55_RS07510;Name=LLC55_RS07510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07510;old_locus_tag=LLC55_07510 NZ_CP086200.1 Protein Homology CDS 1559309 1559842 . + 0 ID=cds-WP_075242210.1;Parent=gene-LLC55_RS07510;Dbxref=Genbank:WP_075242210.1;Name=WP_075242210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155824.1;locus_tag=LLC55_RS07510;product=DUF4019 domain-containing protein;protein_id=WP_075242210.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1559868 1560269 . + . ID=gene-LLC55_RS07515;Name=LLC55_RS07515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07515;old_locus_tag=LLC55_07515 NZ_CP086200.1 Protein Homology CDS 1559868 1560269 . + 0 ID=cds-WP_014502654.1;Parent=gene-LLC55_RS07515;Dbxref=Genbank:WP_014502654.1;Name=WP_014502654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304051.1;locus_tag=LLC55_RS07515;product=MAPEG family protein;protein_id=WP_014502654.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1560308 1560621 . - . ID=gene-LLC55_RS07520;Name=LLC55_RS07520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07520;old_locus_tag=LLC55_07520;partial=true;pseudo=true;start_range=.,1560308 NZ_CP086200.1 Protein Homology CDS 1560308 1560621 . - 0 ID=cds-LLC55_RS07520;Parent=gene-LLC55_RS07520;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169195.1;locus_tag=LLC55_RS07520;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1560308;transl_table=11 NZ_CP086200.1 RefSeq gene 1560618 1560860 . - . ID=gene-LLC55_RS07525;Name=LLC55_RS07525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07525;old_locus_tag=LLC55_07525 NZ_CP086200.1 Protein Homology CDS 1560618 1560860 . - 0 ID=cds-WP_011258326.1;Parent=gene-LLC55_RS07525;Dbxref=Genbank:WP_011258326.1;Name=WP_011258326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919351.1;locus_tag=LLC55_RS07525;product=RNA-binding S4 domain-containing protein;protein_id=WP_011258326.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1560897 1561549 . - . ID=gene-LLC55_RS07530;Name=LLC55_RS07530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07530;old_locus_tag=LLC55_07530;pseudo=true NZ_CP086200.1 Protein Homology CDS 1560897 1561549 . - 0 ID=cds-LLC55_RS07530;Parent=gene-LLC55_RS07530;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169196.1;locus_tag=LLC55_RS07530;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1561579 1561994 . - . ID=gene-LLC55_RS07535;Name=LLC55_RS07535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07535;old_locus_tag=LLC55_07535;pseudo=true NZ_CP086200.1 Protein Homology CDS 1561579 1561994 . - 0 ID=cds-LLC55_RS07535;Parent=gene-LLC55_RS07535;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017914609.1;locus_tag=LLC55_RS07535;product=sigma-70 family RNA polymerase sigma factor;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1562225 1564129 . + . ID=gene-LLC55_RS07540;Name=LLC55_RS07540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07540;old_locus_tag=LLC55_07540 NZ_CP086200.1 Protein Homology CDS 1562225 1564129 . + 0 ID=cds-WP_069964510.1;Parent=gene-LLC55_RS07540;Dbxref=Genbank:WP_069964510.1;Name=WP_069964510.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159026.1;locus_tag=LLC55_RS07540;product=DEAD/DEAH box helicase;protein_id=WP_069964510.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1564393 1566789 . + . ID=gene-LLC55_RS07545;Name=LLC55_RS07545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07545;old_locus_tag=LLC55_07545 NZ_CP086200.1 Protein Homology CDS 1564393 1566789 . + 0 ID=cds-WP_012444418.1;Parent=gene-LLC55_RS07545;Dbxref=Genbank:WP_012444418.1;Name=WP_012444418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573503.1;locus_tag=LLC55_RS07545;product=EAL domain-containing protein;protein_id=WP_012444418.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1566939 1567661 . + . ID=gene-LLC55_RS07550;Name=LLC55_RS07550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07550;old_locus_tag=LLC55_07550 NZ_CP086200.1 Protein Homology CDS 1566939 1567661 . + 0 ID=cds-WP_059317478.1;Parent=gene-LLC55_RS07550;Dbxref=Genbank:WP_059317478.1;Name=WP_059317478.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573501.1;locus_tag=LLC55_RS07550;product=pseudouridine synthase;protein_id=WP_059317478.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1567849 1568796 . - . ID=gene-LLC55_RS07555;Name=LLC55_RS07555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07555;old_locus_tag=LLC55_07555 NZ_CP086200.1 Protein Homology CDS 1567849 1568796 . - 0 ID=cds-WP_069959788.1;Parent=gene-LLC55_RS07555;Dbxref=Genbank:WP_069959788.1;Name=WP_069959788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304048.1;locus_tag=LLC55_RS07555;product=DMT family transporter;protein_id=WP_069959788.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1569071 1569147 . - . ID=gene-LLC55_RS07560;Name=LLC55_RS07560;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS07560;old_locus_tag=LLC55_07560 NZ_CP086200.1 cmsearch ncRNA 1569071 1569147 . - . ID=rna-LLC55_RS07560;Parent=gene-LLC55_RS07560;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS07560;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1569071 1569147 . - . ID=exon-LLC55_RS07560-1;Parent=rna-LLC55_RS07560;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS07560;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 1569206 1570039 . - . ID=gene-LLC55_RS07565;Name=LLC55_RS07565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07565;old_locus_tag=LLC55_07565;pseudo=true NZ_CP086200.1 Protein Homology CDS 1569206 1570039 . - 0 ID=cds-LLC55_RS07565;Parent=gene-LLC55_RS07565;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155814.1;locus_tag=LLC55_RS07565;product=DUF72 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1570612 1571112 . + . ID=gene-LLC55_RS07570;Name=rraA;gbkey=Gene;gene=rraA;gene_biotype=protein_coding;locus_tag=LLC55_RS07570;old_locus_tag=LLC55_07570 NZ_CP086200.1 Protein Homology CDS 1570612 1571112 . + 0 ID=cds-WP_059317476.1;Parent=gene-LLC55_RS07570;Dbxref=Genbank:WP_059317476.1;Name=WP_059317476.1;Ontology_term=GO:0051252,GO:0008428;gbkey=CDS;gene=rraA;go_function=ribonuclease inhibitor activity|0008428||IEA;go_process=regulation of RNA metabolic process|0051252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172501.1;locus_tag=LLC55_RS07570;product=ribonuclease E activity regulator RraA;protein_id=WP_059317476.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1571054 1572730 . + . ID=gene-LLC55_RS07575;Name=LLC55_RS07575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07575;old_locus_tag=LLC55_07575 NZ_CP086200.1 Protein Homology CDS 1571054 1572730 . + 0 ID=cds-WP_059317475.1;Parent=gene-LLC55_RS07575;Dbxref=Genbank:WP_059317475.1;Name=WP_059317475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258335.1;locus_tag=LLC55_RS07575;product=serine hydrolase;protein_id=WP_059317475.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1572877 1574142 . + . ID=gene-LLC55_RS07580;Name=LLC55_RS07580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07580;old_locus_tag=LLC55_07580 NZ_CP086200.1 Protein Homology CDS 1572877 1574142 . + 0 ID=cds-WP_011258336.1;Parent=gene-LLC55_RS07580;Dbxref=Genbank:WP_011258336.1;Name=WP_011258336.1;Ontology_term=GO:0006812,GO:0055085,GO:0015299,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=solute:proton antiporter activity|0015299||IEA;go_process=cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487582.1;locus_tag=LLC55_RS07580;product=cation:proton antiporter;protein_id=WP_011258336.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1574201 1575394 . - . ID=gene-LLC55_RS07585;Name=LLC55_RS07585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07585;old_locus_tag=LLC55_07585 NZ_CP086200.1 Protein Homology CDS 1574201 1575394 . - 0 ID=cds-WP_011408056.1;Parent=gene-LLC55_RS07585;Dbxref=Genbank:WP_011408056.1;Name=WP_011408056.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155809.1;locus_tag=LLC55_RS07585;product=ATP-binding protein;protein_id=WP_011408056.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1575391 1576080 . - . ID=gene-LLC55_RS07590;Name=LLC55_RS07590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07590;old_locus_tag=LLC55_07590 NZ_CP086200.1 Protein Homology CDS 1575391 1576080 . - 0 ID=cds-WP_011408057.1;Parent=gene-LLC55_RS07590;Dbxref=Genbank:WP_011408057.1;Name=WP_011408057.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408057.1;locus_tag=LLC55_RS07590;product=response regulator;protein_id=WP_011408057.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1576186 1577655 . + . ID=gene-LLC55_RS07595;Name=LLC55_RS07595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07595;old_locus_tag=LLC55_07595 NZ_CP086200.1 Protein Homology CDS 1576186 1577655 . + 0 ID=cds-WP_075242209.1;Parent=gene-LLC55_RS07595;Dbxref=Genbank:WP_075242209.1;Name=WP_075242209.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487588.1;locus_tag=LLC55_RS07595;product=efflux transporter outer membrane subunit;protein_id=WP_075242209.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1577675 1578511 . + . ID=gene-LLC55_RS07600;Name=LLC55_RS07600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07600;old_locus_tag=LLC55_07600 NZ_CP086200.1 Protein Homology CDS 1577675 1578511 . + 0 ID=cds-WP_011258340.1;Parent=gene-LLC55_RS07600;Dbxref=Genbank:WP_011258340.1;Name=WP_011258340.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366875.1;locus_tag=LLC55_RS07600;product=MipA/OmpV family protein;protein_id=WP_011258340.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1578537 1579640 . + . ID=gene-LLC55_RS07605;Name=LLC55_RS07605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07605;old_locus_tag=LLC55_07605 NZ_CP086200.1 Protein Homology CDS 1578537 1579640 . + 0 ID=cds-WP_011258341.1;Parent=gene-LLC55_RS07605;Dbxref=Genbank:WP_011258341.1;Name=WP_011258341.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258341.1;locus_tag=LLC55_RS07605;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_011258341.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1579637 1582693 . + . ID=gene-LLC55_RS07610;Name=LLC55_RS07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07610;old_locus_tag=LLC55_07610 NZ_CP086200.1 Protein Homology CDS 1579637 1582693 . + 0 ID=cds-WP_044756980.1;Parent=gene-LLC55_RS07610;Dbxref=Genbank:WP_044756980.1;Name=WP_044756980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366871.1;locus_tag=LLC55_RS07610;product=efflux RND transporter permease subunit;protein_id=WP_044756980.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1582759 1583349 . + . ID=gene-LLC55_RS07615;Name=LLC55_RS07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07615;old_locus_tag=LLC55_07615 NZ_CP086200.1 Protein Homology CDS 1582759 1583349 . + 0 ID=cds-WP_069960188.1;Parent=gene-LLC55_RS07615;Dbxref=Genbank:WP_069960188.1;Name=WP_069960188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487596.1;locus_tag=LLC55_RS07615;product=plasmid pRiA4b ORF-3 family protein;protein_id=WP_069960188.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1583481 1585313 . + . ID=gene-LLC55_RS07620;Name=LLC55_RS07620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07620;old_locus_tag=LLC55_07620 NZ_CP086200.1 Protein Homology CDS 1583481 1585313 . + 0 ID=cds-WP_069959790.1;Parent=gene-LLC55_RS07620;Dbxref=Genbank:WP_069959790.1;Name=WP_069959790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377503.1;locus_tag=LLC55_RS07620;product=ABC transporter ATP-binding protein;protein_id=WP_069959790.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1585389 1586152 . - . ID=gene-LLC55_RS07625;Name=LLC55_RS07625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07625;old_locus_tag=LLC55_07625 NZ_CP086200.1 Protein Homology CDS 1585837 1586152 . - 0 ID=cds-WP_094187782.1;Parent=gene-LLC55_RS07625;Dbxref=Genbank:WP_094187782.1;Name=WP_094187782.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS07625;product=IS5 family transposase;protein_id=WP_094187782.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1585389 1585837 . - 2 ID=cds-WP_094187782.1;Parent=gene-LLC55_RS07625;Dbxref=Genbank:WP_094187782.1;Name=WP_094187782.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS07625;product=IS5 family transposase;protein_id=WP_094187782.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1586195 1587514 . - . ID=gene-LLC55_RS07630;Name=LLC55_RS07630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07630;old_locus_tag=LLC55_07630 NZ_CP086200.1 Protein Homology CDS 1586195 1587514 . - 0 ID=cds-WP_228329707.1;Parent=gene-LLC55_RS07630;Dbxref=Genbank:WP_228329707.1;Name=WP_228329707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS07630;product=IS701-like element ISXo15 family transposase;protein_id=WP_228329707.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1587652 1588687 . + . ID=gene-LLC55_RS07635;Name=LLC55_RS07635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07635;old_locus_tag=LLC55_07635 NZ_CP086200.1 Protein Homology CDS 1587652 1588482 . + 0 ID=cds-WP_220123696.1;Parent=gene-LLC55_RS07635;Dbxref=Genbank:WP_220123696.1;Name=WP_220123696.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=LLC55_RS07635;product=IS5 family transposase;protein_id=WP_220123696.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1588484 1588687 . + 0 ID=cds-WP_220123696.1;Parent=gene-LLC55_RS07635;Dbxref=Genbank:WP_220123696.1;Name=WP_220123696.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=LLC55_RS07635;product=IS5 family transposase;protein_id=WP_220123696.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1588812 1593302 . + . ID=gene-LLC55_RS07640;Name=LLC55_RS07640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07640;old_locus_tag=LLC55_07640 NZ_CP086200.1 Protein Homology CDS 1588812 1593302 . + 0 ID=cds-WP_011408063.1;Parent=gene-LLC55_RS07640;Dbxref=Genbank:WP_011408063.1;Name=WP_011408063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258350.1;locus_tag=LLC55_RS07640;product=RHS repeat protein;protein_id=WP_011408063.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1593299 1593790 . + . ID=gene-LLC55_RS07645;Name=LLC55_RS07645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07645;old_locus_tag=LLC55_07645 NZ_CP086200.1 GeneMarkS-2+ CDS 1593299 1593790 . + 0 ID=cds-WP_125168746.1;Parent=gene-LLC55_RS07645;Dbxref=Genbank:WP_125168746.1;Name=WP_125168746.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS07645;product=hypothetical protein;protein_id=WP_125168746.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1593842 1594810 . + . ID=gene-LLC55_RS07650;Name=LLC55_RS07650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07650;old_locus_tag=LLC55_07650 NZ_CP086200.1 Protein Homology CDS 1593842 1594810 . + 0 ID=cds-WP_011258803.1-3;Parent=gene-LLC55_RS07650;Dbxref=Genbank:WP_011258803.1;Name=WP_011258803.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS07650;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258803.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1594959 1595258 . + . ID=gene-LLC55_RS07655;Name=LLC55_RS07655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07655;old_locus_tag=LLC55_07655 NZ_CP086200.1 GeneMarkS-2+ CDS 1594959 1595258 . + 0 ID=cds-WP_143699999.1;Parent=gene-LLC55_RS07655;Dbxref=Genbank:WP_143699999.1;Name=WP_143699999.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS07655;product=hypothetical protein;protein_id=WP_143699999.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1595255 1595584 . + . ID=gene-LLC55_RS07660;Name=LLC55_RS07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07660;old_locus_tag=LLC55_07660 NZ_CP086200.1 GeneMarkS-2+ CDS 1595255 1595584 . + 0 ID=cds-WP_125168748.1;Parent=gene-LLC55_RS07660;Dbxref=Genbank:WP_125168748.1;Name=WP_125168748.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS07660;product=hypothetical protein;protein_id=WP_125168748.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1595661 1597094 . + . ID=gene-LLC55_RS07665;Name=LLC55_RS07665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07665;old_locus_tag=LLC55_07665;partial=true;pseudo=true;start_range=.,1595661 NZ_CP086200.1 Protein Homology CDS 1595661 1597094 . + 0 ID=cds-LLC55_RS07665;Parent=gene-LLC55_RS07665;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444433.1;locus_tag=LLC55_RS07665;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,1595661;transl_table=11 NZ_CP086200.1 RefSeq gene 1597100 1597468 . + . ID=gene-LLC55_RS07670;Name=LLC55_RS07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07670;old_locus_tag=LLC55_07670 NZ_CP086200.1 Protein Homology CDS 1597100 1597468 . + 0 ID=cds-WP_011408064.1;Parent=gene-LLC55_RS07670;Dbxref=Genbank:WP_011408064.1;Name=WP_011408064.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448936.1;locus_tag=LLC55_RS07670;product=hypothetical protein;protein_id=WP_011408064.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1597615 1598583 . - . ID=gene-LLC55_RS07675;Name=LLC55_RS07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07675;old_locus_tag=LLC55_07675 NZ_CP086200.1 Protein Homology CDS 1597615 1598583 . - 0 ID=cds-WP_011257031.1-2;Parent=gene-LLC55_RS07675;Dbxref=Genbank:WP_011257031.1;Name=WP_011257031.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS07675;product=IS5-like element ISXo1 family transposase;protein_id=WP_011257031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1598798 1599766 . - . ID=gene-LLC55_RS07680;Name=LLC55_RS07680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07680;old_locus_tag=LLC55_07680 NZ_CP086200.1 Protein Homology CDS 1598798 1599766 . - 0 ID=cds-WP_011258802.1-6;Parent=gene-LLC55_RS07680;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS07680;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1599862 1600029 . + . ID=gene-LLC55_RS07685;Name=LLC55_RS07685;end_range=1600029,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07685;old_locus_tag=LLC55_07685;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1599862 1600029 . + 0 ID=cds-LLC55_RS07685;Parent=gene-LLC55_RS07685;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1600029,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257114.1;locus_tag=LLC55_RS07685;partial=true;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1600147 1600368 . + . ID=gene-LLC55_RS07690;Name=LLC55_RS07690;end_range=1600368,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07690;old_locus_tag=LLC55_07690;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1600147 1600368 . + 0 ID=cds-LLC55_RS07690;Parent=gene-LLC55_RS07690;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1600368,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611813.1;locus_tag=LLC55_RS07690;partial=true;product=IS4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1600458 1601414 . + . ID=gene-LLC55_RS07695;Name=LLC55_RS07695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07695;old_locus_tag=LLC55_07695 NZ_CP086200.1 Protein Homology CDS 1600458 1601414 . + 0 ID=cds-WP_041182041.1;Parent=gene-LLC55_RS07695;Dbxref=Genbank:WP_041182041.1;Name=WP_041182041.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS07695;product=IS30-like element IS1112a family transposase;protein_id=WP_041182041.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1601398 1601700 . + . ID=gene-LLC55_RS07700;Name=LLC55_RS07700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07700;old_locus_tag=LLC55_07700 NZ_CP086200.1 Protein Homology CDS 1601398 1601700 . + 0 ID=cds-WP_158645227.1;Parent=gene-LLC55_RS07700;Dbxref=Genbank:WP_158645227.1;Name=WP_158645227.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026861.2;locus_tag=LLC55_RS07700;product=hypothetical protein;protein_id=WP_158645227.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1602261 1603580 . - . ID=gene-LLC55_RS07705;Name=LLC55_RS07705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07705;old_locus_tag=LLC55_07705 NZ_CP086200.1 Protein Homology CDS 1602261 1603580 . - 0 ID=cds-WP_115801881.1;Parent=gene-LLC55_RS07705;Dbxref=Genbank:WP_115801881.1;Name=WP_115801881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS07705;product=IS701-like element ISXo15 family transposase;protein_id=WP_115801881.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1603651 1604259 . - . ID=gene-LLC55_RS07710;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=LLC55_RS07710;old_locus_tag=LLC55_07710 NZ_CP086200.1 Protein Homology CDS 1603651 1604259 . - 0 ID=cds-WP_011258357.1;Parent=gene-LLC55_RS07710;Dbxref=Genbank:WP_011258357.1;Name=WP_011258357.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258357.1;locus_tag=LLC55_RS07710;product=dephospho-CoA kinase;protein_id=WP_011258357.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1604273 1605136 . - . ID=gene-LLC55_RS07715;Name=LLC55_RS07715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07715;old_locus_tag=LLC55_07715 NZ_CP086200.1 Protein Homology CDS 1604273 1605136 . - 0 ID=cds-WP_011258358.1;Parent=gene-LLC55_RS07715;Dbxref=Genbank:WP_011258358.1;Name=WP_011258358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302544.1;locus_tag=LLC55_RS07715;product=A24 family peptidase;protein_id=WP_011258358.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1605143 1606402 . - . ID=gene-LLC55_RS07720;Name=LLC55_RS07720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07720;old_locus_tag=LLC55_07720 NZ_CP086200.1 Protein Homology CDS 1605143 1606402 . - 0 ID=cds-WP_011408067.1;Parent=gene-LLC55_RS07720;Dbxref=Genbank:WP_011408067.1;Name=WP_011408067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437601.1;locus_tag=LLC55_RS07720;product=type II secretion system F family protein;protein_id=WP_011408067.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1606757 1607182 . + . ID=gene-LLC55_RS07725;Name=LLC55_RS07725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07725;old_locus_tag=LLC55_07725 NZ_CP086200.1 Protein Homology CDS 1606757 1607182 . + 0 ID=cds-WP_011408068.1;Parent=gene-LLC55_RS07725;Dbxref=Genbank:WP_011408068.1;Name=WP_011408068.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363792.1;locus_tag=LLC55_RS07725;product=pilin;protein_id=WP_011408068.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1607317 1608906 . + . ID=gene-LLC55_RS07730;Name=LLC55_RS07730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07730;old_locus_tag=LLC55_07730 NZ_CP086200.1 Protein Homology CDS 1607317 1608906 . + 0 ID=cds-WP_011408069.1;Parent=gene-LLC55_RS07730;Dbxref=Genbank:WP_011408069.1;Name=WP_011408069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504322.1;locus_tag=LLC55_RS07730;product=phosphoethanolamine transferase;protein_id=WP_011408069.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1608917 1609546 . + . ID=gene-LLC55_RS07735;Name=LLC55_RS07735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07735;old_locus_tag=LLC55_07735 NZ_CP086200.1 Protein Homology CDS 1608917 1609546 . + 0 ID=cds-WP_011408070.1;Parent=gene-LLC55_RS07735;Dbxref=Genbank:WP_011408070.1;Name=WP_011408070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408070.1;locus_tag=LLC55_RS07735;product=hypothetical protein;protein_id=WP_011408070.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1609543 1611042 . + . ID=gene-LLC55_RS07740;Name=LLC55_RS07740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07740;old_locus_tag=LLC55_07740 NZ_CP086200.1 Protein Homology CDS 1609543 1611042 . + 0 ID=cds-WP_228329708.1;Parent=gene-LLC55_RS07740;Dbxref=Genbank:WP_228329708.1;Name=WP_228329708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437605.1;locus_tag=LLC55_RS07740;product=hypothetical protein;protein_id=WP_228329708.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1611077 1612810 . + . ID=gene-LLC55_RS07745;Name=pilB;gbkey=Gene;gene=pilB;gene_biotype=protein_coding;locus_tag=LLC55_RS07745;old_locus_tag=LLC55_07745 NZ_CP086200.1 Protein Homology CDS 1611077 1612810 . + 0 ID=cds-WP_011408072.1;Parent=gene-LLC55_RS07745;Dbxref=Genbank:WP_011408072.1;Name=WP_011408072.1;Ontology_term=GO:0009297,GO:0016887;gbkey=CDS;gene=pilB;go_function=ATP hydrolysis activity|0016887||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437606.1;locus_tag=LLC55_RS07745;product=type IV-A pilus assembly ATPase PilB;protein_id=WP_011408072.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1612819 1613097 . - . ID=gene-LLC55_RS07750;Name=LLC55_RS07750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07750;old_locus_tag=LLC55_07750 NZ_CP086200.1 Protein Homology CDS 1612819 1613097 . - 0 ID=cds-WP_229001933.1;Parent=gene-LLC55_RS07750;Dbxref=Genbank:WP_229001933.1;Name=WP_229001933.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014691.2;locus_tag=LLC55_RS07750;product=Fic family protein;protein_id=WP_229001933.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1613167 1613328 . - . ID=gene-LLC55_RS07755;Name=LLC55_RS07755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07755;old_locus_tag=LLC55_07755 NZ_CP086200.1 GeneMarkS-2+ CDS 1613167 1613328 . - 0 ID=cds-WP_153296778.1;Parent=gene-LLC55_RS07755;Dbxref=Genbank:WP_153296778.1;Name=WP_153296778.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS07755;product=hypothetical protein;protein_id=WP_153296778.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1613390 1613596 . - . ID=gene-LLC55_RS07760;Name=LLC55_RS07760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07760;old_locus_tag=LLC55_07760 NZ_CP086200.1 Protein Homology CDS 1613390 1613596 . - 0 ID=cds-WP_027703281.1;Parent=gene-LLC55_RS07760;Dbxref=Genbank:WP_027703281.1;Name=WP_027703281.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812262.1;locus_tag=LLC55_RS07760;product=DUF2559 family protein;protein_id=WP_027703281.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1613669 1615060 . - . ID=gene-LLC55_RS07765;Name=LLC55_RS07765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07765;old_locus_tag=LLC55_07765 NZ_CP086200.1 Protein Homology CDS 1613669 1615060 . - 0 ID=cds-WP_033013168.1;Parent=gene-LLC55_RS07765;Dbxref=Genbank:WP_033013168.1;Name=WP_033013168.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003094694.1;locus_tag=LLC55_RS07765;product=sigma-54 dependent transcriptional regulator;protein_id=WP_033013168.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1615391 1617004 . - . ID=gene-LLC55_RS07770;Name=LLC55_RS07770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07770;old_locus_tag=LLC55_07770 NZ_CP086200.1 Protein Homology CDS 1615391 1617004 . - 0 ID=cds-WP_011258366.1;Parent=gene-LLC55_RS07770;Dbxref=Genbank:WP_011258366.1;Name=WP_011258366.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348336.1;locus_tag=LLC55_RS07770;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_011258366.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1617238 1618407 . + . ID=gene-LLC55_RS07775;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=LLC55_RS07775;old_locus_tag=LLC55_07775 NZ_CP086200.1 Protein Homology CDS 1617238 1618407 . + 0 ID=cds-WP_011258367.1;Parent=gene-LLC55_RS07775;Dbxref=Genbank:WP_011258367.1;Name=WP_011258367.1;Ontology_term=GO:0006099,GO:0003824,GO:0005524,GO:0046872;gbkey=CDS;gene=sucC;go_function=catalytic activity|0003824||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183942.1;locus_tag=LLC55_RS07775;product=ADP-forming succinate--CoA ligase subunit beta;protein_id=WP_011258367.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1618432 1619307 . + . ID=gene-LLC55_RS07780;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=LLC55_RS07780;old_locus_tag=LLC55_07780 NZ_CP086200.1 Protein Homology CDS 1618432 1619307 . + 0 ID=cds-WP_011258368.1;Parent=gene-LLC55_RS07780;Dbxref=Genbank:WP_011258368.1;Name=WP_011258368.1;Ontology_term=GO:0003824;gbkey=CDS;gene=sucD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812253.1;locus_tag=LLC55_RS07780;product=succinate--CoA ligase subunit alpha;protein_id=WP_011258368.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1619627 1619923 . + . ID=gene-LLC55_RS07785;Name=LLC55_RS07785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07785;old_locus_tag=LLC55_07785 NZ_CP086200.1 GeneMarkS-2+ CDS 1619627 1619923 . + 0 ID=cds-WP_011408075.1;Parent=gene-LLC55_RS07785;Dbxref=Genbank:WP_011408075.1;Name=WP_011408075.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS07785;product=hypothetical protein;protein_id=WP_011408075.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1620208 1620355 . + . ID=gene-LLC55_RS07790;Name=LLC55_RS07790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07790;old_locus_tag=LLC55_07790;partial=true;pseudo=true;start_range=.,1620208 NZ_CP086200.1 Protein Homology CDS 1620208 1620355 . + 0 ID=cds-LLC55_RS07790;Parent=gene-LLC55_RS07790;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366207.1;locus_tag=LLC55_RS07790;partial=true;product=type II toxin-antitoxin system RelE/ParE family toxin;pseudo=true;start_range=.,1620208;transl_table=11 NZ_CP086200.1 RefSeq gene 1620355 1622010 . + . ID=gene-LLC55_RS07795;Name=LLC55_RS07795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07795;old_locus_tag=LLC55_07795 NZ_CP086200.1 Protein Homology CDS 1620355 1622010 . + 0 ID=cds-WP_075242270.1;Parent=gene-LLC55_RS07795;Dbxref=Genbank:WP_075242270.1;Name=WP_075242270.1;Ontology_term=GO:0009435,GO:0003952,GO:0005524;gbkey=CDS;go_function=NAD+ synthase (glutamine-hydrolyzing) activity|0003952||IEA,ATP binding|0005524||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300805.1;locus_tag=LLC55_RS07795;product=NAD+ synthase;protein_id=WP_075242270.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1622168 1623049 . - . ID=gene-LLC55_RS07800;Name=LLC55_RS07800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07800;old_locus_tag=LLC55_07800 NZ_CP086200.1 Protein Homology CDS 1622168 1623049 . - 0 ID=cds-WP_011258370.1;Parent=gene-LLC55_RS07800;Dbxref=Genbank:WP_011258370.1;Name=WP_011258370.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155156.1;locus_tag=LLC55_RS07800;product=outer membrane protein assembly factor BamD;protein_id=WP_011258370.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1623170 1624165 . + . ID=gene-LLC55_RS07805;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=LLC55_RS07805;old_locus_tag=LLC55_07805 NZ_CP086200.1 Protein Homology CDS 1623170 1624165 . + 0 ID=cds-WP_011408077.1;Parent=gene-LLC55_RS07805;Dbxref=Genbank:WP_011408077.1;Name=WP_011408077.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444450.1;locus_tag=LLC55_RS07805;product=23S rRNA pseudouridine(1911/1915/1917) synthase RluD;protein_id=WP_011408077.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1624173 1624979 . + . ID=gene-LLC55_RS07810;Name=pgeF;gbkey=Gene;gene=pgeF;gene_biotype=protein_coding;locus_tag=LLC55_RS07810;old_locus_tag=LLC55_07810 NZ_CP086200.1 Protein Homology CDS 1624173 1624979 . + 0 ID=cds-WP_011258372.1;Parent=gene-LLC55_RS07810;Dbxref=Genbank:WP_011258372.1;Name=WP_011258372.1;gbkey=CDS;gene=pgeF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444451.1;locus_tag=LLC55_RS07810;product=peptidoglycan editing factor PgeF;protein_id=WP_011258372.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1624982 1625506 . + . ID=gene-LLC55_RS07815;Name=LLC55_RS07815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07815;old_locus_tag=LLC55_07815 NZ_CP086200.1 Protein Homology CDS 1624982 1625506 . + 0 ID=cds-WP_027703285.1;Parent=gene-LLC55_RS07815;Dbxref=Genbank:WP_027703285.1;Name=WP_027703285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303877.1;locus_tag=LLC55_RS07815;product=DUF4166 domain-containing protein;protein_id=WP_027703285.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1625493 1625886 . + . ID=gene-LLC55_RS07820;Name=LLC55_RS07820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07820;old_locus_tag=LLC55_07820;pseudo=true NZ_CP086200.1 Protein Homology CDS 1625493 1625886 . + 0 ID=cds-LLC55_RS07820;Parent=gene-LLC55_RS07820;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052111.1;locus_tag=LLC55_RS07820;product=thiol-disulfide oxidoreductase DCC family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1626111 1627478 . - . ID=gene-LLC55_RS07825;Name=otsA;gbkey=Gene;gene=otsA;gene_biotype=protein_coding;locus_tag=LLC55_RS07825;old_locus_tag=LLC55_07825 NZ_CP086200.1 Protein Homology CDS 1626111 1627478 . - 0 ID=cds-WP_011258376.1;Parent=gene-LLC55_RS07825;Dbxref=Genbank:WP_011258376.1;Name=WP_011258376.1;Ontology_term=GO:0003825;gbkey=CDS;gene=otsA;go_function=alpha%2Calpha-trehalose-phosphate synthase (UDP-forming) activity|0003825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156978.1;locus_tag=LLC55_RS07825;product=alpha%2Calpha-trehalose-phosphate synthase (UDP-forming);protein_id=WP_011258376.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1627475 1629253 . - . ID=gene-LLC55_RS07830;Name=LLC55_RS07830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07830;old_locus_tag=LLC55_07830 NZ_CP086200.1 Protein Homology CDS 1627475 1629253 . - 0 ID=cds-WP_011408078.1;Parent=gene-LLC55_RS07830;Dbxref=Genbank:WP_011408078.1;Name=WP_011408078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901287.1;locus_tag=LLC55_RS07830;product=glycoside hydrolase family 15 protein;protein_id=WP_011408078.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1629298 1630056 . - . ID=gene-LLC55_RS07835;Name=otsB;gbkey=Gene;gene=otsB;gene_biotype=protein_coding;locus_tag=LLC55_RS07835;old_locus_tag=LLC55_07835 NZ_CP086200.1 Protein Homology CDS 1629298 1630056 . - 0 ID=cds-WP_041182043.1;Parent=gene-LLC55_RS07835;Dbxref=Genbank:WP_041182043.1;Name=WP_041182043.1;Ontology_term=GO:0005992,GO:0004805;gbkey=CDS;gene=otsB;go_function=trehalose-phosphatase activity|0004805||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156980.1;locus_tag=LLC55_RS07835;product=trehalose-phosphatase;protein_id=WP_041182043.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1630282 1630905 . - . ID=gene-LLC55_RS07840;Name=LLC55_RS07840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07840;old_locus_tag=LLC55_07840 NZ_CP086200.1 Protein Homology CDS 1630282 1630905 . - 0 ID=cds-WP_228329709.1;Parent=gene-LLC55_RS07840;Dbxref=Genbank:WP_228329709.1;Name=WP_228329709.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303881.1;locus_tag=LLC55_RS07840;product=hypothetical protein;protein_id=WP_228329709.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1631379 1633814 . - . ID=gene-LLC55_RS07845;Name=LLC55_RS07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07845;old_locus_tag=LLC55_07845 NZ_CP086200.1 Protein Homology CDS 1631379 1633814 . - 0 ID=cds-WP_011408081.1;Parent=gene-LLC55_RS07845;Dbxref=Genbank:WP_011408081.1;Name=WP_011408081.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158509.1;locus_tag=LLC55_RS07845;product=TonB-dependent receptor;protein_id=WP_011408081.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1634050 1634523 . + . ID=gene-LLC55_RS07850;Name=LLC55_RS07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07850;old_locus_tag=LLC55_07850 NZ_CP086200.1 Protein Homology CDS 1634050 1634523 . + 0 ID=cds-WP_011408082.1;Parent=gene-LLC55_RS07850;Dbxref=Genbank:WP_011408082.1;Name=WP_011408082.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156981.1;locus_tag=LLC55_RS07850;product=DUF3574 domain-containing protein;protein_id=WP_011408082.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1634619 1635764 . - . ID=gene-LLC55_RS07855;Name=LLC55_RS07855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07855;old_locus_tag=LLC55_07855 NZ_CP086200.1 Protein Homology CDS 1634619 1635764 . - 0 ID=cds-WP_228329710.1;Parent=gene-LLC55_RS07855;Dbxref=Genbank:WP_228329710.1;Name=WP_228329710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408083.1;locus_tag=LLC55_RS07855;product=aldose 1-epimerase family protein;protein_id=WP_228329710.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1636141 1637742 . + . ID=gene-LLC55_RS07860;Name=LLC55_RS07860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07860;old_locus_tag=LLC55_07860 NZ_CP086200.1 Protein Homology CDS 1636141 1637742 . + 0 ID=cds-WP_011258382.1;Parent=gene-LLC55_RS07860;Dbxref=Genbank:WP_011258382.1;Name=WP_011258382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156983.1;locus_tag=LLC55_RS07860;product=membrane protein;protein_id=WP_011258382.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1637828 1638040 . + . ID=gene-LLC55_RS07865;Name=LLC55_RS07865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07865;old_locus_tag=LLC55_07865;partial=true;pseudo=true;start_range=.,1637828 NZ_CP086200.1 Protein Homology CDS 1637828 1638040 . + 0 ID=cds-LLC55_RS07865;Parent=gene-LLC55_RS07865;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LLC55_RS07865;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,1637828;transl_table=11 NZ_CP086200.1 RefSeq gene 1638047 1639378 . - . ID=gene-LLC55_RS07870;Name=LLC55_RS07870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07870;old_locus_tag=LLC55_07870 NZ_CP086200.1 Protein Homology CDS 1638047 1639378 . - 0 ID=cds-WP_027703288.1;Parent=gene-LLC55_RS07870;Dbxref=Genbank:WP_027703288.1;Name=WP_027703288.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371500.1;locus_tag=LLC55_RS07870;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_027703288.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1639332 1640246 . - . ID=gene-LLC55_RS07875;Name=LLC55_RS07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07875;old_locus_tag=LLC55_07875 NZ_CP086200.1 Protein Homology CDS 1639332 1640246 . - 0 ID=cds-WP_042464672.1;Parent=gene-LLC55_RS07875;Dbxref=Genbank:WP_042464672.1;Name=WP_042464672.1;Ontology_term=GO:0016598,GO:0004057,GO:0008914;gbkey=CDS;go_function=arginyltransferase activity|0004057||IEA,leucyltransferase activity|0008914||IEA;go_process=protein arginylation|0016598||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158643.1;locus_tag=LLC55_RS07875;product=arginyltransferase;protein_id=WP_042464672.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1640307 1640888 . + . ID=gene-LLC55_RS07880;Name=LLC55_RS07880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07880;old_locus_tag=LLC55_07880 NZ_CP086200.1 Protein Homology CDS 1640307 1640888 . + 0 ID=cds-WP_011408086.1;Parent=gene-LLC55_RS07880;Dbxref=Genbank:WP_011408086.1;Name=WP_011408086.1;Ontology_term=GO:0005509;gbkey=CDS;go_function=calcium ion binding|0005509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156567.1;locus_tag=LLC55_RS07880;product=EF-hand domain-containing protein;protein_id=WP_011408086.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1640931 1641729 . + . ID=gene-LLC55_RS07885;Name=LLC55_RS07885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07885;old_locus_tag=LLC55_07885 NZ_CP086200.1 Protein Homology CDS 1640931 1641202 . + 0 ID=cds-WP_109181906.1;Parent=gene-LLC55_RS07885;Dbxref=Genbank:WP_109181906.1;Name=WP_109181906.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS07885;product=IS5 family transposase;protein_id=WP_109181906.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1641201 1641729 . + 1 ID=cds-WP_109181906.1;Parent=gene-LLC55_RS07885;Dbxref=Genbank:WP_109181906.1;Name=WP_109181906.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS07885;product=IS5 family transposase;protein_id=WP_109181906.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1641874 1642359 . - . ID=gene-LLC55_RS07890;Name=LLC55_RS07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07890;old_locus_tag=LLC55_07890 NZ_CP086200.1 Protein Homology CDS 1641874 1642359 . - 0 ID=cds-WP_011258387.1;Parent=gene-LLC55_RS07890;Dbxref=Genbank:WP_011258387.1;Name=WP_011258387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167060.1;locus_tag=LLC55_RS07890;product=hypothetical protein;protein_id=WP_011258387.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1642667 1643327 . - . ID=gene-LLC55_RS07895;Name=LLC55_RS07895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS07895;old_locus_tag=LLC55_07895;pseudo=true NZ_CP086200.1 Protein Homology CDS 1642667 1643327 . - 0 ID=cds-LLC55_RS07895;Parent=gene-LLC55_RS07895;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156569.1;locus_tag=LLC55_RS07895;product=sigma-70 family RNA polymerase sigma factor;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1643439 1643942 . - . ID=gene-LLC55_RS07900;Name=LLC55_RS07900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07900;old_locus_tag=LLC55_07900 NZ_CP086200.1 Protein Homology CDS 1643439 1643942 . - 0 ID=cds-WP_011408089.1;Parent=gene-LLC55_RS07900;Dbxref=Genbank:WP_011408089.1;Name=WP_011408089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156570.1;locus_tag=LLC55_RS07900;product=hypothetical protein;protein_id=WP_011408089.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1644170 1645075 . - . ID=gene-LLC55_RS07905;Name=tesB;gbkey=Gene;gene=tesB;gene_biotype=protein_coding;locus_tag=LLC55_RS07905;old_locus_tag=LLC55_07905 NZ_CP086200.1 Protein Homology CDS 1644170 1645075 . - 0 ID=cds-WP_011408090.1;Parent=gene-LLC55_RS07905;Dbxref=Genbank:WP_011408090.1;Name=WP_011408090.1;Ontology_term=GO:0006637,GO:0047617;gbkey=CDS;gene=tesB;go_function=acyl-CoA hydrolase activity|0047617||IEA;go_process=acyl-CoA metabolic process|0006637||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850289.1;locus_tag=LLC55_RS07905;product=acyl-CoA thioesterase II;protein_id=WP_011408090.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1645146 1645916 . - . ID=gene-LLC55_RS07910;Name=LLC55_RS07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07910;old_locus_tag=LLC55_07910 NZ_CP086200.1 Protein Homology CDS 1645146 1645916 . - 0 ID=cds-WP_011408091.1;Parent=gene-LLC55_RS07910;Dbxref=Genbank:WP_011408091.1;Name=WP_011408091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156572.1;locus_tag=LLC55_RS07910;product=enoyl-CoA hydratase/isomerase family protein;protein_id=WP_011408091.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1645940 1646404 . + . ID=gene-LLC55_RS07915;Name=LLC55_RS07915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07915;old_locus_tag=LLC55_07915 NZ_CP086200.1 Protein Homology CDS 1645940 1646404 . + 0 ID=cds-WP_011258392.1;Parent=gene-LLC55_RS07915;Dbxref=Genbank:WP_011258392.1;Name=WP_011258392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346748.1;locus_tag=LLC55_RS07915;product=copper chaperone PCu(A)C;protein_id=WP_011258392.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1646518 1646922 . - . ID=gene-LLC55_RS07920;Name=LLC55_RS07920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07920;old_locus_tag=LLC55_07920 NZ_CP086200.1 Protein Homology CDS 1646518 1646922 . - 0 ID=cds-WP_011258393.1;Parent=gene-LLC55_RS07920;Dbxref=Genbank:WP_011258393.1;Name=WP_011258393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989963.1;locus_tag=LLC55_RS07920;product=thioesterase family protein;protein_id=WP_011258393.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1646922 1649888 . - . ID=gene-LLC55_RS07925;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=LLC55_RS07925;old_locus_tag=LLC55_07925 NZ_CP086200.1 Protein Homology CDS 1646922 1649888 . - 0 ID=cds-WP_012444462.1;Parent=gene-LLC55_RS07925;Dbxref=Genbank:WP_012444462.1;Name=WP_012444462.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504280.1;locus_tag=LLC55_RS07925;product=excinuclease ABC subunit UvrA;protein_id=WP_012444462.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1650181 1650501 . + . ID=gene-LLC55_RS07930;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=LLC55_RS07930;old_locus_tag=LLC55_07930 NZ_CP086200.1 Protein Homology CDS 1650181 1650501 . + 0 ID=cds-WP_011258394.1;Parent=gene-LLC55_RS07930;Dbxref=Genbank:WP_011258394.1;Name=WP_011258394.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplU;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484328.1;locus_tag=LLC55_RS07930;product=50S ribosomal protein L21;protein_id=WP_011258394.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1650514 1650774 . + . ID=gene-LLC55_RS07935;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=LLC55_RS07935;old_locus_tag=LLC55_07935 NZ_CP086200.1 Protein Homology CDS 1650514 1650774 . + 0 ID=cds-WP_011258395.1;Parent=gene-LLC55_RS07935;Dbxref=Genbank:WP_011258395.1;Name=WP_011258395.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmA;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013534652.1;locus_tag=LLC55_RS07935;product=50S ribosomal protein L27;protein_id=WP_011258395.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1651007 1652059 . + . ID=gene-LLC55_RS07940;Name=obgE;gbkey=Gene;gene=obgE;gene_biotype=protein_coding;locus_tag=LLC55_RS07940;old_locus_tag=LLC55_07940 NZ_CP086200.1 Protein Homology CDS 1651007 1652059 . + 0 ID=cds-WP_011258396.1;Parent=gene-LLC55_RS07940;Dbxref=Genbank:WP_011258396.1;Name=WP_011258396.1;Ontology_term=GO:0000287,GO:0003924,GO:0005525;gbkey=CDS;gene=obgE;go_function=magnesium ion binding|0000287||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036350.1;locus_tag=LLC55_RS07940;product=GTPase ObgE;protein_id=WP_011258396.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1652151 1652420 . - . ID=gene-LLC55_RS07945;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=LLC55_RS07945;old_locus_tag=LLC55_07945 NZ_CP086200.1 Protein Homology CDS 1652151 1652420 . - 0 ID=cds-WP_003484323.1;Parent=gene-LLC55_RS07945;Dbxref=Genbank:WP_003484323.1;Name=WP_003484323.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsT;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019184515.1;locus_tag=LLC55_RS07945;product=30S ribosomal protein S20;protein_id=WP_003484323.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1652537 1654141 . + . ID=gene-LLC55_RS07950;Name=murJ;gbkey=Gene;gene=murJ;gene_biotype=protein_coding;locus_tag=LLC55_RS07950;old_locus_tag=LLC55_07950 NZ_CP086200.1 Protein Homology CDS 1652537 1654141 . + 0 ID=cds-WP_011408094.1;Parent=gene-LLC55_RS07950;Dbxref=Genbank:WP_011408094.1;Name=WP_011408094.1;Ontology_term=GO:0009252,GO:0034204;gbkey=CDS;gene=murJ;go_process=peptidoglycan biosynthetic process|0009252||IEA,lipid translocation|0034204||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158642.1;locus_tag=LLC55_RS07950;product=murein biosynthesis integral membrane protein MurJ;protein_id=WP_011408094.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1654340 1655356 . + . ID=gene-LLC55_RS07955;Name=LLC55_RS07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS07955;old_locus_tag=LLC55_07955 NZ_CP086200.1 Protein Homology CDS 1654340 1655356 . + 0 ID=cds-WP_011408095.1;Parent=gene-LLC55_RS07955;Dbxref=Genbank:WP_011408095.1;Name=WP_011408095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165409.1;locus_tag=LLC55_RS07955;product=bifunctional riboflavin kinase/FAD synthetase;protein_id=WP_011408095.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1655363 1658194 . + . ID=gene-LLC55_RS07960;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=LLC55_RS07960;old_locus_tag=LLC55_07960 NZ_CP086200.1 Protein Homology CDS 1655363 1658194 . + 0 ID=cds-WP_011258399.1;Parent=gene-LLC55_RS07960;Dbxref=Genbank:WP_011258399.1;Name=WP_011258399.1;Ontology_term=GO:0006428,GO:0004822,GO:0005737;gbkey=CDS;gene=ileS;go_component=cytoplasm|0005737||IEA;go_function=isoleucine-tRNA ligase activity|0004822||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928804.1;locus_tag=LLC55_RS07960;product=isoleucine--tRNA ligase;protein_id=WP_011258399.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1658509 1659009 . + . ID=gene-LLC55_RS07965;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=LLC55_RS07965;old_locus_tag=LLC55_07965 NZ_CP086200.1 Protein Homology CDS 1658509 1659009 . + 0 ID=cds-WP_011408096.1;Parent=gene-LLC55_RS07965;Dbxref=Genbank:WP_011408096.1;Name=WP_011408096.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005886;gbkey=CDS;gene=lspA;go_component=plasma membrane|0005886||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408096.1;locus_tag=LLC55_RS07965;product=signal peptidase II;protein_id=WP_011408096.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1659098 1660048 . + . ID=gene-LLC55_RS07970;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=LLC55_RS07970;old_locus_tag=LLC55_07970 NZ_CP086200.1 Protein Homology CDS 1659098 1660048 . + 0 ID=cds-WP_011258401.1;Parent=gene-LLC55_RS07970;Dbxref=Genbank:WP_011258401.1;Name=WP_011258401.1;Ontology_term=GO:0019288,GO:0050992,GO:0046872,GO:0051745;gbkey=CDS;gene=ispH;go_function=metal ion binding|0046872||IEA,4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity|0051745||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA,dimethylallyl diphosphate biosynthetic process|0050992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258401.1;locus_tag=LLC55_RS07970;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_011258401.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1660125 1660200 . + . ID=gene-LLC55_RS07975;Name=LLC55_RS07975;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS07975;old_locus_tag=LLC55_07975 NZ_CP086200.1 tRNAscan-SE tRNA 1660125 1660200 . + . ID=rna-LLC55_RS07975;Parent=gene-LLC55_RS07975;anticodon=(pos:1660158..1660160);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS07975;product=tRNA-Thr NZ_CP086200.1 tRNAscan-SE exon 1660125 1660200 . + . ID=exon-LLC55_RS07975-1;Parent=rna-LLC55_RS07975;anticodon=(pos:1660158..1660160);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS07975;product=tRNA-Thr NZ_CP086200.1 RefSeq gene 1660562 1661497 . + . ID=gene-LLC55_RS07980;Name=cyoA;gbkey=Gene;gene=cyoA;gene_biotype=protein_coding;locus_tag=LLC55_RS07980;old_locus_tag=LLC55_07980 NZ_CP086200.1 Protein Homology CDS 1660562 1661497 . + 0 ID=cds-WP_011258402.1;Parent=gene-LLC55_RS07980;Dbxref=Genbank:WP_011258402.1;Name=WP_011258402.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoA;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300511.1;locus_tag=LLC55_RS07980;product=ubiquinol oxidase subunit II;protein_id=WP_011258402.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1661497 1663497 . + . ID=gene-LLC55_RS07985;Name=cyoB;gbkey=Gene;gene=cyoB;gene_biotype=protein_coding;locus_tag=LLC55_RS07985;old_locus_tag=LLC55_07985 NZ_CP086200.1 Protein Homology CDS 1661497 1663497 . + 0 ID=cds-WP_011408097.1;Parent=gene-LLC55_RS07985;Dbxref=Genbank:WP_011408097.1;Name=WP_011408097.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoB;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472398.1;locus_tag=LLC55_RS07985;product=cytochrome o ubiquinol oxidase subunit I;protein_id=WP_011408097.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1663494 1664126 . + . ID=gene-LLC55_RS07990;Name=cyoC;gbkey=Gene;gene=cyoC;gene_biotype=protein_coding;locus_tag=LLC55_RS07990;old_locus_tag=LLC55_07990 NZ_CP086200.1 Protein Homology CDS 1663494 1664126 . + 0 ID=cds-WP_011258404.1;Parent=gene-LLC55_RS07990;Dbxref=Genbank:WP_011258404.1;Name=WP_011258404.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoC;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851535.1;locus_tag=LLC55_RS07990;product=cytochrome o ubiquinol oxidase subunit III;protein_id=WP_011258404.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1664126 1664461 . + . ID=gene-LLC55_RS07995;Name=cyoD;gbkey=Gene;gene=cyoD;gene_biotype=protein_coding;locus_tag=LLC55_RS07995;old_locus_tag=LLC55_07995 NZ_CP086200.1 Protein Homology CDS 1664126 1664461 . + 0 ID=cds-WP_010365831.1;Parent=gene-LLC55_RS07995;Dbxref=Genbank:WP_010365831.1;Name=WP_010365831.1;Ontology_term=GO:0015990,GO:0009486,GO:0016020;gbkey=CDS;gene=cyoD;go_component=membrane|0016020||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156584.1;locus_tag=LLC55_RS07995;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=WP_010365831.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1664628 1666508 . + . ID=gene-LLC55_RS08000;Name=LLC55_RS08000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08000;old_locus_tag=LLC55_08000 NZ_CP086200.1 Protein Homology CDS 1664628 1666508 . + 0 ID=cds-WP_162013044.1;Parent=gene-LLC55_RS08000;Dbxref=Genbank:WP_162013044.1;Name=WP_162013044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346766.1;locus_tag=LLC55_RS08000;product=tetratricopeptide repeat protein;protein_id=WP_162013044.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1666709 1668979 . + . ID=gene-LLC55_RS08005;Name=tssI;gbkey=Gene;gene=tssI;gene_biotype=protein_coding;locus_tag=LLC55_RS08005;old_locus_tag=LLC55_08005 NZ_CP086200.1 Protein Homology CDS 1666709 1668979 . + 0 ID=cds-WP_011258406.1;Parent=gene-LLC55_RS08005;Dbxref=Genbank:WP_011258406.1;Name=WP_011258406.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssI;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300515.1;locus_tag=LLC55_RS08005;product=type VI secretion system tip protein TssI/VgrG;protein_id=WP_011258406.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1669003 1670622 . + . ID=gene-LLC55_RS08010;Name=LLC55_RS08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08010;old_locus_tag=LLC55_08010 NZ_CP086200.1 Protein Homology CDS 1669003 1670622 . + 0 ID=cds-WP_041182048.1;Parent=gene-LLC55_RS08010;Dbxref=Genbank:WP_041182048.1;Name=WP_041182048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444471.1;locus_tag=LLC55_RS08010;product=hypothetical protein;protein_id=WP_041182048.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1670619 1670747 . + . ID=gene-LLC55_RS23455;Name=LLC55_RS23455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23455 NZ_CP086200.1 Protein Homology CDS 1670619 1670747 . + 0 ID=cds-WP_256364562.1;Parent=gene-LLC55_RS23455;Dbxref=Genbank:WP_256364562.1;Name=WP_256364562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300517.1;locus_tag=LLC55_RS23455;product=hypothetical protein;protein_id=WP_256364562.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1670766 1675349 . + . ID=gene-LLC55_RS08015;Name=LLC55_RS08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08015;old_locus_tag=LLC55_08015 NZ_CP086200.1 Protein Homology CDS 1670766 1675349 . + 0 ID=cds-WP_228329711.1;Parent=gene-LLC55_RS08015;Dbxref=Genbank:WP_228329711.1;Name=WP_228329711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408101.1;locus_tag=LLC55_RS08015;product=DUF6531 domain-containing protein;protein_id=WP_228329711.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1675342 1675938 . + . ID=gene-LLC55_RS08020;Name=LLC55_RS08020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08020;old_locus_tag=LLC55_08020 NZ_CP086200.1 Protein Homology CDS 1675342 1675938 . + 0 ID=cds-WP_075242341.1;Parent=gene-LLC55_RS08020;Dbxref=Genbank:WP_075242341.1;Name=WP_075242341.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025791.2;locus_tag=LLC55_RS08020;product=SUKH-4 family immunity protein;protein_id=WP_075242341.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1675945 1677612 . + . ID=gene-LLC55_RS08025;Name=LLC55_RS08025;end_range=1677612,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08025;old_locus_tag=LLC55_08025;partial=true;pseudo=true;start_range=.,1675945 NZ_CP086200.1 Protein Homology CDS 1675945 1677612 . + 0 ID=cds-LLC55_RS08025;Parent=gene-LLC55_RS08025;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1677612,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258408.1;locus_tag=LLC55_RS08025;partial=true;product=type IV secretion protein Rhs;pseudo=true;start_range=.,1675945;transl_table=11 NZ_CP086200.1 RefSeq gene 1677734 1678776 . + . ID=gene-LLC55_RS08030;Name=LLC55_RS08030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08030;old_locus_tag=LLC55_08030 NZ_CP086200.1 Protein Homology CDS 1677734 1677929 . + 0 ID=cds-WP_229001932.1;Parent=gene-LLC55_RS08030;Dbxref=Genbank:WP_229001932.1;Name=WP_229001932.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS08030;product=IS3 family transposase;protein_id=WP_229001932.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1677929 1678776 . + 2 ID=cds-WP_229001932.1;Parent=gene-LLC55_RS08030;Dbxref=Genbank:WP_229001932.1;Name=WP_229001932.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS08030;product=IS3 family transposase;protein_id=WP_229001932.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1678803 1680395 . - . ID=gene-LLC55_RS08035;Name=LLC55_RS08035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08035;old_locus_tag=LLC55_08035;partial=true;pseudo=true;start_range=.,1678803 NZ_CP086200.1 Protein Homology CDS 1678803 1680395 . - 0 ID=cds-LLC55_RS08035;Parent=gene-LLC55_RS08035;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444487.1;locus_tag=LLC55_RS08035;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1678803;transl_table=11 NZ_CP086200.1 RefSeq gene 1680392 1680595 . - . ID=gene-LLC55_RS08040;Name=LLC55_RS08040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08040;old_locus_tag=LLC55_08040 NZ_CP086200.1 GeneMarkS-2+ CDS 1680392 1680595 . - 0 ID=cds-WP_012445372.1;Parent=gene-LLC55_RS08040;Dbxref=Genbank:WP_012445372.1;Name=WP_012445372.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS08040;product=hypothetical protein;protein_id=WP_012445372.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1680666 1683221 . - . ID=gene-LLC55_RS08045;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=LLC55_RS08045;old_locus_tag=LLC55_08045 NZ_CP086200.1 Protein Homology CDS 1680666 1683221 . - 0 ID=cds-WP_011408105.1;Parent=gene-LLC55_RS08045;Dbxref=Genbank:WP_011408105.1;Name=WP_011408105.1;Ontology_term=GO:0006298,GO:0005524;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484195.1;locus_tag=LLC55_RS08045;product=DNA mismatch repair protein MutS;protein_id=WP_011408105.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1683990 1685030 . - . ID=gene-LLC55_RS08050;Name=LLC55_RS08050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08050;old_locus_tag=LLC55_08050;pseudo=true NZ_CP086200.1 Protein Homology CDS 1683990 1685030 . - 0 ID=cds-LLC55_RS08050;Parent=gene-LLC55_RS08050;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS08050;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1685160 1685809 . + . ID=gene-LLC55_RS08055;Name=LLC55_RS08055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08055;old_locus_tag=LLC55_08055;partial=true;pseudo=true;start_range=.,1685160 NZ_CP086200.1 Protein Homology CDS 1685160 1685809 . + 0 ID=cds-LLC55_RS08055;Parent=gene-LLC55_RS08055;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS08055;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,1685160;transl_table=11 NZ_CP086200.1 RefSeq gene 1686190 1687581 . - . ID=gene-LLC55_RS08060;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=LLC55_RS08060;old_locus_tag=LLC55_08060 NZ_CP086200.1 Protein Homology CDS 1686190 1687581 . - 0 ID=cds-WP_011258418.1;Parent=gene-LLC55_RS08060;Dbxref=Genbank:WP_011258418.1;Name=WP_011258418.1;Ontology_term=GO:0006281,GO:0005524;gbkey=CDS;gene=radA;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484290.1;locus_tag=LLC55_RS08060;product=DNA repair protein RadA;protein_id=WP_011258418.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1687666 1688707 . - . ID=gene-LLC55_RS08065;Name=LLC55_RS08065;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08065;old_locus_tag=LLC55_08065;pseudo=true NZ_CP086200.1 Protein Homology CDS 1687666 1688707 . - 0 ID=cds-LLC55_RS08065;Parent=gene-LLC55_RS08065;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS08065;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1688972 1690528 . + . ID=gene-LLC55_RS08070;Name=LLC55_RS08070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08070;old_locus_tag=LLC55_08070 NZ_CP086200.1 Protein Homology CDS 1688972 1690528 . + 0 ID=cds-WP_011258422.1;Parent=gene-LLC55_RS08070;Dbxref=Genbank:WP_011258422.1;Name=WP_011258422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156664.1;locus_tag=LLC55_RS08070;product=glycosyltransferase family 39 protein;protein_id=WP_011258422.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1690792 1692941 . - . ID=gene-LLC55_RS08075;Name=LLC55_RS08075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08075;old_locus_tag=LLC55_08075;pseudo=true NZ_CP086200.1 Protein Homology CDS 1690792 1692941 . - 0 ID=cds-LLC55_RS08075;Parent=gene-LLC55_RS08075;Note=frameshifted%3B internal stop;Ontology_term=GO:0004629;gbkey=CDS;go_function=phospholipase C activity|0004629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118433.1;locus_tag=LLC55_RS08075;product=phospholipase C%2C phosphocholine-specific;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1693112 1694350 . - . ID=gene-LLC55_RS08080;Name=LLC55_RS08080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08080;old_locus_tag=LLC55_08080 NZ_CP086200.1 Protein Homology CDS 1693112 1694350 . - 0 ID=cds-WP_011408111.1;Parent=gene-LLC55_RS08080;Dbxref=Genbank:WP_011408111.1;Name=WP_011408111.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445363.1;locus_tag=LLC55_RS08080;product=MFS transporter;protein_id=WP_011408111.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1694791 1695084 . + . ID=gene-LLC55_RS08085;Name=LLC55_RS08085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08085;old_locus_tag=LLC55_08085 NZ_CP086200.1 Protein Homology CDS 1694791 1695084 . + 0 ID=cds-WP_011408112.1;Parent=gene-LLC55_RS08085;Dbxref=Genbank:WP_011408112.1;Name=WP_011408112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578079.1;locus_tag=LLC55_RS08085;product=zinc ribbon domain-containing protein;protein_id=WP_011408112.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1695582 1696358 . - . ID=gene-LLC55_RS08090;Name=LLC55_RS08090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08090;old_locus_tag=LLC55_08090 NZ_CP086200.1 Protein Homology CDS 1695582 1696358 . - 0 ID=cds-WP_011258426.1;Parent=gene-LLC55_RS08090;Dbxref=Genbank:WP_011258426.1;Name=WP_011258426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156660.1;locus_tag=LLC55_RS08090;product=DUF3011 domain-containing protein;protein_id=WP_011258426.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1696516 1698282 . + . ID=gene-LLC55_RS08095;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=LLC55_RS08095;old_locus_tag=LLC55_08095 NZ_CP086200.1 Protein Homology CDS 1696516 1698282 . + 0 ID=cds-WP_011408113.1;Parent=gene-LLC55_RS08095;Dbxref=Genbank:WP_011408113.1;Name=WP_011408113.1;Ontology_term=GO:0006418,GO:0000166,GO:0004812,GO:0005524,GO:0016874;gbkey=CDS;gene=aspS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913642.1;locus_tag=LLC55_RS08095;product=aspartate--tRNA ligase;protein_id=WP_011408113.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1698794 1699321 . + . ID=gene-LLC55_RS08100;Name=LLC55_RS08100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08100;old_locus_tag=LLC55_08100 NZ_CP086200.1 Protein Homology CDS 1698794 1699321 . + 0 ID=cds-WP_011258428.1;Parent=gene-LLC55_RS08100;Dbxref=Genbank:WP_011258428.1;Name=WP_011258428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504183.1;locus_tag=LLC55_RS08100;product=N-acetyltransferase;protein_id=WP_011258428.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1699421 1700098 . + . ID=gene-LLC55_RS08105;Name=LLC55_RS08105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08105;old_locus_tag=LLC55_08105 NZ_CP086200.1 Protein Homology CDS 1699421 1700098 . + 0 ID=cds-WP_044756957.1;Parent=gene-LLC55_RS08105;Dbxref=Genbank:WP_044756957.1;Name=WP_044756957.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112578.1;locus_tag=LLC55_RS08105;product=alpha/beta hydrolase;protein_id=WP_044756957.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1700188 1700916 . + . ID=gene-LLC55_RS08110;Name=LLC55_RS08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08110;old_locus_tag=LLC55_08110 NZ_CP086200.1 Protein Homology CDS 1700188 1700916 . + 0 ID=cds-WP_011258430.1;Parent=gene-LLC55_RS08110;Dbxref=Genbank:WP_011258430.1;Name=WP_011258430.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052063.1;locus_tag=LLC55_RS08110;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_011258430.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1701031 1701555 . + . ID=gene-LLC55_RS08115;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=LLC55_RS08115;old_locus_tag=LLC55_08115 NZ_CP086200.1 Protein Homology CDS 1701031 1701555 . + 0 ID=cds-WP_011258431.1;Parent=gene-LLC55_RS08115;Dbxref=Genbank:WP_011258431.1;Name=WP_011258431.1;Ontology_term=GO:0006310,GO:0008821;gbkey=CDS;gene=ruvC;go_function=crossover junction endodeoxyribonuclease activity|0008821||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156655.1;locus_tag=LLC55_RS08115;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_011258431.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1701713 1702297 . + . ID=gene-LLC55_RS08120;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=LLC55_RS08120;old_locus_tag=LLC55_08120 NZ_CP086200.1 Protein Homology CDS 1701713 1702297 . + 0 ID=cds-WP_011258432.1;Parent=gene-LLC55_RS08120;Dbxref=Genbank:WP_011258432.1;Name=WP_011258432.1;Ontology_term=GO:0006310,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=four-way junction helicase activity|0009378||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258432.1;locus_tag=LLC55_RS08120;product=Holliday junction branch migration protein RuvA;protein_id=WP_011258432.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1702497 1704404 . + . ID=gene-LLC55_RS08125;Name=LLC55_RS08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08125;old_locus_tag=LLC55_08125 NZ_CP086200.1 Protein Homology CDS 1702497 1704404 . + 0 ID=cds-WP_011258433.1;Parent=gene-LLC55_RS08125;Dbxref=Genbank:WP_011258433.1;Name=WP_011258433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156654.1;locus_tag=LLC55_RS08125;product=potassium transporter Kup;protein_id=WP_011258433.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1704533 1705570 . + . ID=gene-LLC55_RS08130;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=LLC55_RS08130;old_locus_tag=LLC55_08130 NZ_CP086200.1 Protein Homology CDS 1704533 1705570 . + 0 ID=cds-WP_010363979.1;Parent=gene-LLC55_RS08130;Dbxref=Genbank:WP_010363979.1;Name=WP_010363979.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363979.1;locus_tag=LLC55_RS08130;product=Holliday junction branch migration DNA helicase RuvB;protein_id=WP_010363979.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1705623 1706081 . + . ID=gene-LLC55_RS08135;Name=ybgC;gbkey=Gene;gene=ybgC;gene_biotype=protein_coding;locus_tag=LLC55_RS08135;old_locus_tag=LLC55_08135 NZ_CP086200.1 Protein Homology CDS 1705623 1706081 . + 0 ID=cds-WP_011258434.1;Parent=gene-LLC55_RS08135;Dbxref=Genbank:WP_011258434.1;Name=WP_011258434.1;Ontology_term=GO:0005515,GO:0047617,GO:0005737;gbkey=CDS;gene=ybgC;go_component=cytoplasm|0005737||IEA;go_function=protein binding|0005515||IEA,acyl-CoA hydrolase activity|0047617||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258434.1;locus_tag=LLC55_RS08135;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_011258434.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1706093 1706872 . + . ID=gene-LLC55_RS08140;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=LLC55_RS08140;old_locus_tag=LLC55_08140 NZ_CP086200.1 Protein Homology CDS 1706093 1706872 . + 0 ID=cds-WP_012445351.1;Parent=gene-LLC55_RS08140;Dbxref=Genbank:WP_012445351.1;Name=WP_012445351.1;Ontology_term=GO:1902600,GO:0015078,GO:0005886;gbkey=CDS;gene=tolQ;go_component=plasma membrane|0005886||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913648.1;locus_tag=LLC55_RS08140;product=protein TolQ;protein_id=WP_012445351.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1707029 1707478 . + . ID=gene-LLC55_RS08145;Name=tolR;gbkey=Gene;gene=tolR;gene_biotype=protein_coding;locus_tag=LLC55_RS08145;old_locus_tag=LLC55_08145 NZ_CP086200.1 Protein Homology CDS 1707029 1707478 . + 0 ID=cds-WP_011408114.1;Parent=gene-LLC55_RS08145;Dbxref=Genbank:WP_011408114.1;Name=WP_011408114.1;Ontology_term=GO:0061024,GO:1902600,GO:0015078,GO:0098567;gbkey=CDS;gene=tolR;go_component=periplasmic side of plasma membrane|0098567||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=membrane organization|0061024||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913652.1;locus_tag=LLC55_RS08145;product=protein TolR;protein_id=WP_011408114.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1707468 1708508 . + . ID=gene-LLC55_RS08150;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=LLC55_RS08150;old_locus_tag=LLC55_08150 NZ_CP086200.1 Protein Homology CDS 1707468 1708508 . + 0 ID=cds-WP_044756956.1;Parent=gene-LLC55_RS08150;Dbxref=Genbank:WP_044756956.1;Name=WP_044756956.1;Ontology_term=GO:0006810,GO:0005215,GO:0098567;gbkey=CDS;gene=tolA;go_component=periplasmic side of plasma membrane|0098567||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482566.1;locus_tag=LLC55_RS08150;product=cell envelope integrity protein TolA;protein_id=WP_044756956.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1708768 1710087 . + . ID=gene-LLC55_RS08155;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=LLC55_RS08155;old_locus_tag=LLC55_08155 NZ_CP086200.1 Protein Homology CDS 1708768 1710087 . + 0 ID=cds-WP_041182054.1;Parent=gene-LLC55_RS08155;Dbxref=Genbank:WP_041182054.1;Name=WP_041182054.1;Ontology_term=GO:0006810,GO:0005215,GO:0030288;gbkey=CDS;gene=tolB;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445349.1;locus_tag=LLC55_RS08155;product=Tol-Pal system beta propeller repeat protein TolB;protein_id=WP_041182054.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1710145 1710663 . + . ID=gene-LLC55_RS08160;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=LLC55_RS08160;old_locus_tag=LLC55_08160 NZ_CP086200.1 Protein Homology CDS 1710145 1710663 . + 0 ID=cds-WP_011408116.1;Parent=gene-LLC55_RS08160;Dbxref=Genbank:WP_011408116.1;Name=WP_011408116.1;Ontology_term=GO:0009279;gbkey=CDS;gene=pal;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010344309.1;locus_tag=LLC55_RS08160;product=peptidoglycan-associated lipoprotein Pal;protein_id=WP_011408116.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1710670 1711488 . + . ID=gene-LLC55_RS08165;Name=ybgF;gbkey=Gene;gene=ybgF;gene_biotype=protein_coding;locus_tag=LLC55_RS08165;old_locus_tag=LLC55_08165 NZ_CP086200.1 Protein Homology CDS 1710670 1711488 . + 0 ID=cds-WP_011258440.1;Parent=gene-LLC55_RS08165;Dbxref=Genbank:WP_011258440.1;Name=WP_011258440.1;Ontology_term=GO:0005515;gbkey=CDS;gene=ybgF;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304871.1;locus_tag=LLC55_RS08165;product=tol-pal system protein YbgF;protein_id=WP_011258440.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1711531 1712214 . + . ID=gene-LLC55_RS08170;Name=queE;gbkey=Gene;gene=queE;gene_biotype=protein_coding;locus_tag=LLC55_RS08170;old_locus_tag=LLC55_08170 NZ_CP086200.1 Protein Homology CDS 1711531 1712214 . + 0 ID=cds-WP_011408117.1;Parent=gene-LLC55_RS08170;Dbxref=Genbank:WP_011408117.1;Name=WP_011408117.1;Ontology_term=GO:0006400,GO:0051539,GO:1904047;gbkey=CDS;gene=queE;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165275.1;locus_tag=LLC55_RS08170;product=7-carboxy-7-deazaguanine synthase QueE;protein_id=WP_011408117.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1713448 1714158 . - . ID=gene-LLC55_RS08175;Name=LLC55_RS08175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08175;old_locus_tag=LLC55_08175 NZ_CP086200.1 Protein Homology CDS 1713448 1714158 . - 0 ID=cds-WP_011408120.1;Parent=gene-LLC55_RS08175;Dbxref=Genbank:WP_011408120.1;Name=WP_011408120.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904347.1;locus_tag=LLC55_RS08175;product=rRNA pseudouridine synthase;protein_id=WP_011408120.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1714393 1714599 . + . ID=gene-LLC55_RS08180;Name=LLC55_RS08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08180;old_locus_tag=LLC55_08180 NZ_CP086200.1 Protein Homology CDS 1714393 1714599 . + 0 ID=cds-WP_011408121.1;Parent=gene-LLC55_RS08180;Dbxref=Genbank:WP_011408121.1;Name=WP_011408121.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913665.1;locus_tag=LLC55_RS08180;product=hypothetical protein;protein_id=WP_011408121.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1714755 1715815 . + . ID=gene-LLC55_RS08185;Name=LLC55_RS08185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08185;old_locus_tag=LLC55_08185;partial=true;pseudo=true;start_range=.,1714755 NZ_CP086200.1 Protein Homology CDS 1714755 1715815 . + 0 ID=cds-LLC55_RS08185;Parent=gene-LLC55_RS08185;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924661.1;locus_tag=LLC55_RS08185;partial=true;product=methyl-accepting chemotaxis protein;pseudo=true;start_range=.,1714755;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1715956 1716305 . - . ID=gene-LLC55_RS08190;Name=LLC55_RS08190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08190;old_locus_tag=LLC55_08190;pseudo=true NZ_CP086200.1 Protein Homology CDS 1715956 1716305 . - 0 ID=cds-LLC55_RS08190;Parent=gene-LLC55_RS08190;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017462820.1;locus_tag=LLC55_RS08190;product=GNAT family N-acetyltransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1716393 1716971 . - . ID=gene-LLC55_RS08195;Name=LLC55_RS08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08195;old_locus_tag=LLC55_08195 NZ_CP086200.1 Protein Homology CDS 1716393 1716971 . - 0 ID=cds-WP_103057327.1;Parent=gene-LLC55_RS08195;Dbxref=Genbank:WP_103057327.1;Name=WP_103057327.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155532.1;locus_tag=LLC55_RS08195;product=LysE/ArgO family amino acid transporter;protein_id=WP_103057327.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1717119 1718435 . - . ID=gene-LLC55_RS08200;Name=LLC55_RS08200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08200;old_locus_tag=LLC55_08200;pseudo=true NZ_CP086200.1 Protein Homology CDS 1717119 1718435 . - 0 ID=cds-LLC55_RS08200;Parent=gene-LLC55_RS08200;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS08200;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1718506 1719321 . - . ID=gene-LLC55_RS08205;Name=LLC55_RS08205;end_range=1719321,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08205;old_locus_tag=LLC55_08205;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1718506 1719321 . - 0 ID=cds-LLC55_RS08205;Parent=gene-LLC55_RS08205;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=1719321,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011000070.1;locus_tag=LLC55_RS08205;partial=true;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1719508 1720743 . + . ID=gene-LLC55_RS08210;Name=LLC55_RS08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08210;old_locus_tag=LLC55_08210 NZ_CP086200.1 Protein Homology CDS 1719508 1720743 . + 0 ID=cds-WP_011257310.1;Parent=gene-LLC55_RS08210;Dbxref=Genbank:WP_011257310.1;Name=WP_011257310.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS08210;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011257310.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1720794 1721557 . - . ID=gene-LLC55_RS08215;Name=LLC55_RS08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08215;old_locus_tag=LLC55_08215 NZ_CP086200.1 Protein Homology CDS 1721242 1721557 . - 0 ID=cds-WP_094187715.1-2;Parent=gene-LLC55_RS08215;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS08215;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1720794 1721242 . - 2 ID=cds-WP_094187715.1-2;Parent=gene-LLC55_RS08215;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS08215;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1721624 1723000 . - . ID=gene-LLC55_RS08220;Name=LLC55_RS08220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08220;old_locus_tag=LLC55_08220 NZ_CP086200.1 Protein Homology CDS 1721624 1723000 . - 0 ID=cds-WP_069959795.1;Parent=gene-LLC55_RS08220;Dbxref=Genbank:WP_069959795.1;Name=WP_069959795.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS08220;product=IS5 family transposase;protein_id=WP_069959795.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1723192 1723268 . + . ID=gene-LLC55_RS08225;Name=LLC55_RS08225;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS08225;old_locus_tag=LLC55_08225 NZ_CP086200.1 cmsearch ncRNA 1723192 1723268 . + . ID=rna-LLC55_RS08225;Parent=gene-LLC55_RS08225;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS08225;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1723192 1723268 . + . ID=exon-LLC55_RS08225-1;Parent=rna-LLC55_RS08225;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS08225;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1723379 1724053 . + . ID=gene-LLC55_RS08230;Name=queC;gbkey=Gene;gene=queC;gene_biotype=protein_coding;locus_tag=LLC55_RS08230;old_locus_tag=LLC55_08230 NZ_CP086200.1 Protein Homology CDS 1723379 1724053 . + 0 ID=cds-WP_008578058.1;Parent=gene-LLC55_RS08230;Dbxref=Genbank:WP_008578058.1;Name=WP_008578058.1;Ontology_term=GO:0008616;gbkey=CDS;gene=queC;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038130.1;locus_tag=LLC55_RS08230;product=7-cyano-7-deazaguanine synthase QueC;protein_id=WP_008578058.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1724101 1724176 . + . ID=gene-LLC55_RS08235;Name=LLC55_RS08235;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS08235;old_locus_tag=LLC55_08235 NZ_CP086200.1 tRNAscan-SE tRNA 1724101 1724176 . + . ID=rna-LLC55_RS08235;Parent=gene-LLC55_RS08235;anticodon=(pos:1724134..1724136);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS08235;product=tRNA-Lys NZ_CP086200.1 tRNAscan-SE exon 1724101 1724176 . + . ID=exon-LLC55_RS08235-1;Parent=rna-LLC55_RS08235;anticodon=(pos:1724134..1724136);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS08235;product=tRNA-Lys NZ_CP086200.1 RefSeq gene 1724298 1725482 . - . ID=gene-LLC55_RS08240;Name=LLC55_RS08240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08240;old_locus_tag=LLC55_08240 NZ_CP086200.1 Protein Homology CDS 1724298 1725482 . - 0 ID=cds-WP_011258445.1;Parent=gene-LLC55_RS08240;Dbxref=Genbank:WP_011258445.1;Name=WP_011258445.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115544.1;locus_tag=LLC55_RS08240;product=integrase;protein_id=WP_011258445.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1725482 1725703 . - . ID=gene-LLC55_RS08245;Name=LLC55_RS08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08245;old_locus_tag=LLC55_08245 NZ_CP086200.1 Protein Homology CDS 1725482 1725703 . - 0 ID=cds-WP_041182055.1;Parent=gene-LLC55_RS08245;Dbxref=Genbank:WP_041182055.1;Name=WP_041182055.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922239.1;locus_tag=LLC55_RS08245;product=hypothetical protein;protein_id=WP_041182055.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1725700 1725906 . - . ID=gene-LLC55_RS08250;Name=LLC55_RS08250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08250;old_locus_tag=LLC55_08250 NZ_CP086200.1 Protein Homology CDS 1725700 1725906 . - 0 ID=cds-WP_011408130.1;Parent=gene-LLC55_RS08250;Dbxref=Genbank:WP_011408130.1;Name=WP_011408130.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408130.1;locus_tag=LLC55_RS08250;product=hypothetical protein;protein_id=WP_011408130.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1725903 1726175 . - . ID=gene-LLC55_RS08255;Name=LLC55_RS08255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08255;old_locus_tag=LLC55_08255 NZ_CP086200.1 Protein Homology CDS 1725903 1726175 . - 0 ID=cds-WP_011408131.1;Parent=gene-LLC55_RS08255;Dbxref=Genbank:WP_011408131.1;Name=WP_011408131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408131.1;locus_tag=LLC55_RS08255;product=hypothetical protein;protein_id=WP_011408131.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1726172 1726417 . - . ID=gene-LLC55_RS08260;Name=LLC55_RS08260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08260;old_locus_tag=LLC55_08260 NZ_CP086200.1 Protein Homology CDS 1726172 1726417 . - 0 ID=cds-WP_041182407.1;Parent=gene-LLC55_RS08260;Dbxref=Genbank:WP_041182407.1;Name=WP_041182407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364111.1;locus_tag=LLC55_RS08260;product=hypothetical protein;protein_id=WP_041182407.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1726414 1726689 . - . ID=gene-LLC55_RS08265;Name=LLC55_RS08265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08265;old_locus_tag=LLC55_08265 NZ_CP086200.1 Protein Homology CDS 1726414 1726689 . - 0 ID=cds-WP_011258447.1;Parent=gene-LLC55_RS08265;Dbxref=Genbank:WP_011258447.1;Name=WP_011258447.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258447.1;locus_tag=LLC55_RS08265;product=hypothetical protein;protein_id=WP_011258447.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1726682 1726858 . - . ID=gene-LLC55_RS08270;Name=LLC55_RS08270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08270;old_locus_tag=LLC55_08270 NZ_CP086200.1 Protein Homology CDS 1726682 1726858 . - 0 ID=cds-WP_053503014.1;Parent=gene-LLC55_RS08270;Dbxref=Genbank:WP_053503014.1;Name=WP_053503014.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922230.1;locus_tag=LLC55_RS08270;product=hypothetical protein;protein_id=WP_053503014.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1726851 1727261 . - . ID=gene-LLC55_RS08275;Name=LLC55_RS08275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08275;old_locus_tag=LLC55_08275 NZ_CP086200.1 Protein Homology CDS 1726851 1727261 . - 0 ID=cds-WP_010364106.1;Parent=gene-LLC55_RS08275;Dbxref=Genbank:WP_010364106.1;Name=WP_010364106.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038122.1;locus_tag=LLC55_RS08275;product=hypothetical protein;protein_id=WP_010364106.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1727487 1727765 . - . ID=gene-LLC55_RS08280;Name=LLC55_RS08280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08280;old_locus_tag=LLC55_08280 NZ_CP086200.1 Protein Homology CDS 1727487 1727765 . - 0 ID=cds-WP_011258448.1;Parent=gene-LLC55_RS08280;Dbxref=Genbank:WP_011258448.1;Name=WP_011258448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922224.1;locus_tag=LLC55_RS08280;product=hypothetical protein;protein_id=WP_011258448.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1727762 1727980 . - . ID=gene-LLC55_RS08285;Name=LLC55_RS08285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08285;old_locus_tag=LLC55_08285 NZ_CP086200.1 Protein Homology CDS 1727762 1727980 . - 0 ID=cds-WP_011408133.1;Parent=gene-LLC55_RS08285;Dbxref=Genbank:WP_011408133.1;Name=WP_011408133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922222.1;locus_tag=LLC55_RS08285;product=hypothetical protein;protein_id=WP_011408133.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1728289 1730985 . - . ID=gene-LLC55_RS08290;Name=LLC55_RS08290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08290;old_locus_tag=LLC55_08290 NZ_CP086200.1 Protein Homology CDS 1728289 1730985 . - 0 ID=cds-WP_011408134.1;Parent=gene-LLC55_RS08290;Dbxref=Genbank:WP_011408134.1;Name=WP_011408134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258449.1;locus_tag=LLC55_RS08290;product=toprim domain-containing protein;protein_id=WP_011408134.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1730995 1731207 . - . ID=gene-LLC55_RS08295;Name=LLC55_RS08295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08295;old_locus_tag=LLC55_08295 NZ_CP086200.1 Protein Homology CDS 1730995 1731207 . - 0 ID=cds-WP_011258450.1;Parent=gene-LLC55_RS08295;Dbxref=Genbank:WP_011258450.1;Name=WP_011258450.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364092.1;locus_tag=LLC55_RS08295;product=hypothetical protein;protein_id=WP_011258450.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1731204 1731482 . - . ID=gene-LLC55_RS08300;Name=LLC55_RS08300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08300;old_locus_tag=LLC55_08300 NZ_CP086200.1 Protein Homology CDS 1731204 1731482 . - 0 ID=cds-WP_011408135.1;Parent=gene-LLC55_RS08300;Dbxref=Genbank:WP_011408135.1;Name=WP_011408135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851009.1;locus_tag=LLC55_RS08300;product=hypothetical protein;protein_id=WP_011408135.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1731493 1731813 . - . ID=gene-LLC55_RS08305;Name=LLC55_RS08305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08305;old_locus_tag=LLC55_08305 NZ_CP086200.1 Protein Homology CDS 1731493 1731813 . - 0 ID=cds-WP_011408136.1;Parent=gene-LLC55_RS08305;Dbxref=Genbank:WP_011408136.1;Name=WP_011408136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572766.1;locus_tag=LLC55_RS08305;product=ogr/Delta-like zinc finger family protein;protein_id=WP_011408136.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1731816 1732055 . - . ID=gene-LLC55_RS08310;Name=LLC55_RS08310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08310;old_locus_tag=LLC55_08310 NZ_CP086200.1 Protein Homology CDS 1731816 1732055 . - 0 ID=cds-WP_228329739.1;Parent=gene-LLC55_RS08310;Dbxref=Genbank:WP_228329739.1;Name=WP_228329739.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:TIGR04111.1;locus_tag=LLC55_RS08310;product=DNA-binding protein;protein_id=WP_228329739.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1732145 1732582 . + . ID=gene-LLC55_RS08315;Name=LLC55_RS08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08315;old_locus_tag=LLC55_08315 NZ_CP086200.1 Protein Homology CDS 1732145 1732582 . + 0 ID=cds-WP_011258452.1;Parent=gene-LLC55_RS08315;Dbxref=Genbank:WP_011258452.1;Name=WP_011258452.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258452.1;locus_tag=LLC55_RS08315;product=helix-turn-helix transcriptional regulator;protein_id=WP_011258452.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1733243 1734229 . - . ID=gene-LLC55_RS08320;Name=LLC55_RS08320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08320;old_locus_tag=LLC55_08320 NZ_CP086200.1 Protein Homology CDS 1733243 1734229 . - 0 ID=cds-WP_011258453.1;Parent=gene-LLC55_RS08320;Dbxref=Genbank:WP_011258453.1;Name=WP_011258453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258453.1;locus_tag=LLC55_RS08320;product=phage late control D family protein;protein_id=WP_011258453.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1734226 1734627 . - . ID=gene-LLC55_RS08325;Name=LLC55_RS08325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08325;old_locus_tag=LLC55_08325 NZ_CP086200.1 Protein Homology CDS 1734226 1734627 . - 0 ID=cds-WP_011258454.1;Parent=gene-LLC55_RS08325;Dbxref=Genbank:WP_011258454.1;Name=WP_011258454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258454.1;locus_tag=LLC55_RS08325;product=phage tail protein;protein_id=WP_011258454.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1734640 1737510 . - . ID=gene-LLC55_RS08330;Name=LLC55_RS08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08330;old_locus_tag=LLC55_08330 NZ_CP086200.1 Protein Homology CDS 1734640 1737510 . - 0 ID=cds-WP_011258455.1;Parent=gene-LLC55_RS08330;Dbxref=Genbank:WP_011258455.1;Name=WP_011258455.1;Ontology_term=GO:0016032,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167608.1;locus_tag=LLC55_RS08330;product=phage tail tape measure protein;protein_id=WP_011258455.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1737543 1737656 . - . ID=gene-LLC55_RS08335;Name=LLC55_RS08335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08335;old_locus_tag=LLC55_08335 NZ_CP086200.1 Protein Homology CDS 1737543 1737656 . - 0 ID=cds-WP_011258456.1;Parent=gene-LLC55_RS08335;Dbxref=Genbank:WP_011258456.1;Name=WP_011258456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118941.1;locus_tag=LLC55_RS08335;product=GpE family phage tail protein;protein_id=WP_011258456.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1737665 1737967 . - . ID=gene-LLC55_RS08340;Name=LLC55_RS08340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08340;old_locus_tag=LLC55_08340 NZ_CP086200.1 Protein Homology CDS 1737665 1737967 . - 0 ID=cds-WP_011258457.1;Parent=gene-LLC55_RS08340;Dbxref=Genbank:WP_011258457.1;Name=WP_011258457.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851112.1;locus_tag=LLC55_RS08340;product=phage tail assembly protein;protein_id=WP_011258457.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1738013 1738522 . - . ID=gene-LLC55_RS08345;Name=LLC55_RS08345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08345;old_locus_tag=LLC55_08345 NZ_CP086200.1 Protein Homology CDS 1738013 1738522 . - 0 ID=cds-WP_011258458.1;Parent=gene-LLC55_RS08345;Dbxref=Genbank:WP_011258458.1;Name=WP_011258458.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038108.1;locus_tag=LLC55_RS08345;product=phage major tail tube protein;protein_id=WP_011258458.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1738553 1739719 . - . ID=gene-LLC55_RS08350;Name=LLC55_RS08350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08350;old_locus_tag=LLC55_08350 NZ_CP086200.1 Protein Homology CDS 1738553 1739719 . - 0 ID=cds-WP_069959796.1;Parent=gene-LLC55_RS08350;Dbxref=Genbank:WP_069959796.1;Name=WP_069959796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450506.1;locus_tag=LLC55_RS08350;product=phage tail sheath subtilisin-like domain-containing protein;protein_id=WP_069959796.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1739731 1740090 . - . ID=gene-LLC55_RS08355;Name=LLC55_RS08355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08355;old_locus_tag=LLC55_08355 NZ_CP086200.1 Protein Homology CDS 1739731 1740090 . - 0 ID=cds-WP_069959797.1;Parent=gene-LLC55_RS08355;Dbxref=Genbank:WP_069959797.1;Name=WP_069959797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809191.1;locus_tag=LLC55_RS08355;product=GPW/gp25 family protein;protein_id=WP_069959797.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1740087 1740650 . - . ID=gene-LLC55_RS08360;Name=LLC55_RS08360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08360;old_locus_tag=LLC55_08360 NZ_CP086200.1 Protein Homology CDS 1740087 1740650 . - 0 ID=cds-WP_113090164.1;Parent=gene-LLC55_RS08360;Dbxref=Genbank:WP_113090164.1;Name=WP_113090164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809189.1;locus_tag=LLC55_RS08360;product=phage baseplate assembly protein V;protein_id=WP_113090164.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1740711 1741289 . - . ID=gene-LLC55_RS08365;Name=LLC55_RS08365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08365;old_locus_tag=LLC55_08365 NZ_CP086200.1 Protein Homology CDS 1740711 1741289 . - 0 ID=cds-WP_069959799.1;Parent=gene-LLC55_RS08365;Dbxref=Genbank:WP_069959799.1;Name=WP_069959799.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408139.1;locus_tag=LLC55_RS08365;product=phage tail protein;protein_id=WP_069959799.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1741297 1742802 . - . ID=gene-LLC55_RS08370;Name=LLC55_RS08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08370;old_locus_tag=LLC55_08370 NZ_CP086200.1 Protein Homology CDS 1741297 1742802 . - 0 ID=cds-WP_113090165.1;Parent=gene-LLC55_RS08370;Dbxref=Genbank:WP_113090165.1;Name=WP_113090165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408140.1;locus_tag=LLC55_RS08370;product=phage tail protein;protein_id=WP_113090165.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1742812 1743357 . - . ID=gene-LLC55_RS08375;Name=LLC55_RS08375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08375;old_locus_tag=LLC55_08375 NZ_CP086200.1 Protein Homology CDS 1742812 1743357 . - 0 ID=cds-WP_041182705.1;Parent=gene-LLC55_RS08375;Dbxref=Genbank:WP_041182705.1;Name=WP_041182705.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118949.1;locus_tag=LLC55_RS08375;product=phage tail protein I;protein_id=WP_041182705.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1743350 1744240 . - . ID=gene-LLC55_RS08380;Name=LLC55_RS08380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08380;old_locus_tag=LLC55_08380 NZ_CP086200.1 Protein Homology CDS 1743350 1744240 . - 0 ID=cds-WP_113090166.1;Parent=gene-LLC55_RS08380;Dbxref=Genbank:WP_113090166.1;Name=WP_113090166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904173.1;locus_tag=LLC55_RS08380;product=baseplate J/gp47 family protein;protein_id=WP_113090166.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1744474 1745237 . - . ID=gene-LLC55_RS08385;Name=LLC55_RS08385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08385;old_locus_tag=LLC55_08385 NZ_CP086200.1 Protein Homology CDS 1744922 1745237 . - 0 ID=cds-WP_094187782.1-2;Parent=gene-LLC55_RS08385;Dbxref=Genbank:WP_094187782.1;Name=WP_094187782.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS08385;product=IS5 family transposase;protein_id=WP_094187782.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1744474 1744922 . - 2 ID=cds-WP_094187782.1-2;Parent=gene-LLC55_RS08385;Dbxref=Genbank:WP_094187782.1;Name=WP_094187782.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS08385;product=IS5 family transposase;protein_id=WP_094187782.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1745356 1746324 . + . ID=gene-LLC55_RS08390;Name=LLC55_RS08390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08390;old_locus_tag=LLC55_08390 NZ_CP086200.1 Protein Homology CDS 1745356 1746324 . + 0 ID=cds-WP_011258803.1-4;Parent=gene-LLC55_RS08390;Dbxref=Genbank:WP_011258803.1;Name=WP_011258803.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS08390;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258803.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1746723 1747124 . + . ID=gene-LLC55_RS08395;Name=LLC55_RS08395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08395;old_locus_tag=LLC55_08395 NZ_CP086200.1 GeneMarkS-2+ CDS 1746723 1747124 . + 0 ID=cds-WP_146769850.1;Parent=gene-LLC55_RS08395;Dbxref=Genbank:WP_146769850.1;Name=WP_146769850.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS08395;product=hypothetical protein;protein_id=WP_146769850.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1747358 1747642 . - . ID=gene-LLC55_RS08400;Name=LLC55_RS08400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08400;old_locus_tag=LLC55_08400 NZ_CP086200.1 Protein Homology CDS 1747358 1747642 . - 0 ID=cds-WP_048484878.1;Parent=gene-LLC55_RS08400;Dbxref=Genbank:WP_048484878.1;Name=WP_048484878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036801.1;locus_tag=LLC55_RS08400;product=hypothetical protein;protein_id=WP_048484878.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1747923 1748369 . - . ID=gene-LLC55_RS08405;Name=LLC55_RS08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08405;old_locus_tag=LLC55_08405 NZ_CP086200.1 Protein Homology CDS 1747923 1748369 . - 0 ID=cds-WP_048484877.1;Parent=gene-LLC55_RS08405;Dbxref=Genbank:WP_048484877.1;Name=WP_048484877.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167618.1;locus_tag=LLC55_RS08405;product=phage virion morphogenesis protein;protein_id=WP_048484877.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1748357 1748776 . - . ID=gene-LLC55_RS08410;Name=LLC55_RS08410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08410;old_locus_tag=LLC55_08410 NZ_CP086200.1 Protein Homology CDS 1748357 1748776 . - 0 ID=cds-WP_048484876.1;Parent=gene-LLC55_RS08410;Dbxref=Genbank:WP_048484876.1;Name=WP_048484876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445490.1;locus_tag=LLC55_RS08410;product=phage tail protein;protein_id=WP_048484876.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1748773 1749261 . - . ID=gene-LLC55_RS08415;Name=LLC55_RS08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08415;old_locus_tag=LLC55_08415 NZ_CP086200.1 Protein Homology CDS 1748773 1749261 . - 0 ID=cds-WP_012445489.1;Parent=gene-LLC55_RS08415;Dbxref=Genbank:WP_012445489.1;Name=WP_012445489.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118585.1;locus_tag=LLC55_RS08415;product=hypothetical protein;protein_id=WP_012445489.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1749261 1749899 . - . ID=gene-LLC55_RS08420;Name=LLC55_RS08420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08420;old_locus_tag=LLC55_08420 NZ_CP086200.1 Protein Homology CDS 1749261 1749899 . - 0 ID=cds-WP_048484928.1;Parent=gene-LLC55_RS08420;Dbxref=Genbank:WP_048484928.1;Name=WP_048484928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572719.1;locus_tag=LLC55_RS08420;product=glycoside hydrolase family 19 protein;protein_id=WP_048484928.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1749899 1750174 . - . ID=gene-LLC55_RS08425;Name=LLC55_RS08425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08425;old_locus_tag=LLC55_08425 NZ_CP086200.1 Protein Homology CDS 1749899 1750174 . - 0 ID=cds-WP_113090128.1;Parent=gene-LLC55_RS08425;Dbxref=Genbank:WP_113090128.1;Name=WP_113090128.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167622.1;locus_tag=LLC55_RS08425;product=phage holin family protein;protein_id=WP_113090128.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1750167 1750523 . - . ID=gene-LLC55_RS08430;Name=LLC55_RS08430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08430;old_locus_tag=LLC55_08430 NZ_CP086200.1 Protein Homology CDS 1750167 1750523 . - 0 ID=cds-WP_069959806.1;Parent=gene-LLC55_RS08430;Dbxref=Genbank:WP_069959806.1;Name=WP_069959806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929454.1;locus_tag=LLC55_RS08430;product=phage holin family protein;protein_id=WP_069959806.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1750528 1750737 . - . ID=gene-LLC55_RS08435;Name=LLC55_RS08435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08435;old_locus_tag=LLC55_08435 NZ_CP086200.1 Protein Homology CDS 1750528 1750737 . - 0 ID=cds-WP_011258473.1;Parent=gene-LLC55_RS08435;Dbxref=Genbank:WP_011258473.1;Name=WP_011258473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000868168.1;locus_tag=LLC55_RS08435;product=tail protein X;protein_id=WP_011258473.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1750737 1751204 . - . ID=gene-LLC55_RS08440;Name=LLC55_RS08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08440;old_locus_tag=LLC55_08440 NZ_CP086200.1 Protein Homology CDS 1750737 1751204 . - 0 ID=cds-WP_011408149.1;Parent=gene-LLC55_RS08440;Dbxref=Genbank:WP_011408149.1;Name=WP_011408149.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809166.1;locus_tag=LLC55_RS08440;product=head completion/stabilization protein;protein_id=WP_011408149.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1751304 1752023 . - . ID=gene-LLC55_RS08445;Name=LLC55_RS08445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08445;old_locus_tag=LLC55_08445 NZ_CP086200.1 Protein Homology CDS 1751304 1752023 . - 0 ID=cds-WP_011258475.1;Parent=gene-LLC55_RS08445;Dbxref=Genbank:WP_011258475.1;Name=WP_011258475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364022.1;locus_tag=LLC55_RS08445;product=terminase endonuclease subunit;protein_id=WP_011258475.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1752027 1753043 . - . ID=gene-LLC55_RS08450;Name=LLC55_RS08450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08450;old_locus_tag=LLC55_08450 NZ_CP086200.1 Protein Homology CDS 1752027 1753043 . - 0 ID=cds-WP_011258476.1;Parent=gene-LLC55_RS08450;Dbxref=Genbank:WP_011258476.1;Name=WP_011258476.1;Ontology_term=GO:0019069,GO:0005198,GO:0019028;gbkey=CDS;go_component=viral capsid|0019028||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral capsid assembly|0019069||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809141.1;locus_tag=LLC55_RS08450;product=phage major capsid protein%2C P2 family;protein_id=WP_011258476.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1753090 1753932 . - . ID=gene-LLC55_RS08455;Name=LLC55_RS08455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08455;old_locus_tag=LLC55_08455 NZ_CP086200.1 Protein Homology CDS 1753090 1753932 . - 0 ID=cds-WP_011408152.1;Parent=gene-LLC55_RS08455;Dbxref=Genbank:WP_011408152.1;Name=WP_011408152.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809139.1;locus_tag=LLC55_RS08455;product=GPO family capsid scaffolding protein;protein_id=WP_011408152.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1754075 1755838 . + . ID=gene-LLC55_RS08460;Name=LLC55_RS08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08460;old_locus_tag=LLC55_08460 NZ_CP086200.1 Protein Homology CDS 1754075 1755838 . + 0 ID=cds-WP_173340394.1;Parent=gene-LLC55_RS08460;Dbxref=Genbank:WP_173340394.1;Name=WP_173340394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929437.1;locus_tag=LLC55_RS08460;product=terminase ATPase subunit family protein;protein_id=WP_173340394.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1755838 1756860 . + . ID=gene-LLC55_RS08465;Name=LLC55_RS08465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08465;old_locus_tag=LLC55_08465 NZ_CP086200.1 Protein Homology CDS 1755838 1756860 . + 0 ID=cds-WP_069959807.1;Parent=gene-LLC55_RS08465;Dbxref=Genbank:WP_069959807.1;Name=WP_069959807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408154.1;locus_tag=LLC55_RS08465;product=phage portal protein;protein_id=WP_069959807.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1756829 1757035 . - . ID=gene-LLC55_RS08470;Name=LLC55_RS08470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08470;old_locus_tag=LLC55_08470 NZ_CP086200.1 Protein Homology CDS 1756829 1757035 . - 0 ID=cds-WP_228329740.1;Parent=gene-LLC55_RS08470;Dbxref=Genbank:WP_228329740.1;Name=WP_228329740.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171515.1;locus_tag=LLC55_RS08470;product=hypothetical protein;protein_id=WP_228329740.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1756946 1757131 . + . ID=gene-LLC55_RS08475;Name=LLC55_RS08475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08475;old_locus_tag=LLC55_08475;partial=true;pseudo=true;start_range=.,1756946 NZ_CP086200.1 Protein Homology CDS 1756946 1757131 . + 0 ID=cds-LLC55_RS08475;Parent=gene-LLC55_RS08475;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021626.2;locus_tag=LLC55_RS08475;partial=true;product=Com family DNA-binding transcriptional regulator;pseudo=true;start_range=.,1756946;transl_table=11 NZ_CP086200.1 RefSeq gene 1757049 1757750 . + . ID=gene-LLC55_RS08480;Name=LLC55_RS08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08480;old_locus_tag=LLC55_08480 NZ_CP086200.1 Protein Homology CDS 1757049 1757750 . + 0 ID=cds-WP_011408155.1;Parent=gene-LLC55_RS08480;Dbxref=Genbank:WP_011408155.1;Name=WP_011408155.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408155.1;locus_tag=LLC55_RS08480;product=site-specific DNA-methyltransferase;protein_id=WP_011408155.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1757817 1758563 . - . ID=gene-LLC55_RS08485;Name=LLC55_RS08485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08485;old_locus_tag=LLC55_08485 NZ_CP086200.1 Protein Homology CDS 1757817 1758563 . - 0 ID=cds-WP_011408156.1;Parent=gene-LLC55_RS08485;Dbxref=Genbank:WP_011408156.1;Name=WP_011408156.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026917.2;locus_tag=LLC55_RS08485;product=Imm52 family immunity protein;protein_id=WP_011408156.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1758560 1759267 . - . ID=gene-LLC55_RS08490;Name=LLC55_RS08490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08490;old_locus_tag=LLC55_08490 NZ_CP086200.1 Protein Homology CDS 1758560 1759267 . - 0 ID=cds-WP_113221989.1;Parent=gene-LLC55_RS08490;Dbxref=Genbank:WP_113221989.1;Name=WP_113221989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408157.1;locus_tag=LLC55_RS08490;product=Tox-REase-5 domain-containing protein;protein_id=WP_113221989.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1759281 1759622 . - . ID=gene-LLC55_RS08495;Name=LLC55_RS08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08495;old_locus_tag=LLC55_08495 NZ_CP086200.1 Protein Homology CDS 1759281 1759622 . - 0 ID=cds-WP_011408158.1;Parent=gene-LLC55_RS08495;Dbxref=Genbank:WP_011408158.1;Name=WP_011408158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408158.1;locus_tag=LLC55_RS08495;product=hypothetical protein;protein_id=WP_011408158.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1759603 1760112 . - . ID=gene-LLC55_RS08500;Name=LLC55_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08500;old_locus_tag=LLC55_08500 NZ_CP086200.1 Protein Homology CDS 1759603 1760112 . - 0 ID=cds-WP_082325589.1;Parent=gene-LLC55_RS08500;Dbxref=Genbank:WP_082325589.1;Name=WP_082325589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260874.1;locus_tag=LLC55_RS08500;product=DUF4123 domain-containing protein;protein_id=WP_082325589.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1760109 1760519 . - . ID=gene-LLC55_RS08505;Name=LLC55_RS08505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08505;old_locus_tag=LLC55_08505 NZ_CP086200.1 Protein Homology CDS 1760109 1760519 . - 0 ID=cds-WP_042464694.1;Parent=gene-LLC55_RS08505;Dbxref=Genbank:WP_042464694.1;Name=WP_042464694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409850.1;locus_tag=LLC55_RS08505;product=PAAR domain-containing protein;protein_id=WP_042464694.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1761649 1762935 . - . ID=gene-LLC55_RS08510;Name=LLC55_RS08510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08510;old_locus_tag=LLC55_08510 NZ_CP086200.1 Protein Homology CDS 1761649 1762935 . - 0 ID=cds-WP_011408161.1;Parent=gene-LLC55_RS08510;Dbxref=Genbank:WP_011408161.1;Name=WP_011408161.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927424.1;locus_tag=LLC55_RS08510;product=Y-family DNA polymerase;protein_id=WP_011408161.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1763163 1763498 . + . ID=gene-LLC55_RS08515;Name=LLC55_RS08515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08515;old_locus_tag=LLC55_08515 NZ_CP086200.1 Protein Homology CDS 1763163 1763498 . + 0 ID=cds-WP_011408162.1;Parent=gene-LLC55_RS08515;Dbxref=Genbank:WP_011408162.1;Name=WP_011408162.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408162.1;locus_tag=LLC55_RS08515;product=hypothetical protein;protein_id=WP_011408162.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1763844 1763992 . - . ID=gene-LLC55_RS08520;Name=LLC55_RS08520;end_range=1763992,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08520;old_locus_tag=LLC55_08520;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1763844 1763992 . - 0 ID=cds-LLC55_RS08520;Parent=gene-LLC55_RS08520;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1763992,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257519.1;locus_tag=LLC55_RS08520;partial=true;product=integrase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1764205 1764609 . - . ID=gene-LLC55_RS08525;Name=LLC55_RS08525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08525;old_locus_tag=LLC55_08525 NZ_CP086200.1 Protein Homology CDS 1764205 1764609 . - 0 ID=cds-WP_011408164.1;Parent=gene-LLC55_RS08525;Dbxref=Genbank:WP_011408164.1;Name=WP_011408164.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090797.1;locus_tag=LLC55_RS08525;product=response regulator;protein_id=WP_011408164.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1764688 1765185 . - . ID=gene-LLC55_RS08530;Name=LLC55_RS08530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08530;old_locus_tag=LLC55_08530 NZ_CP086200.1 Protein Homology CDS 1764688 1765185 . - 0 ID=cds-WP_011408165.1;Parent=gene-LLC55_RS08530;Dbxref=Genbank:WP_011408165.1;Name=WP_011408165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155539.1;locus_tag=LLC55_RS08530;product=hypothetical protein;protein_id=WP_011408165.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1765324 1767120 . - . ID=gene-LLC55_RS08535;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=LLC55_RS08535;old_locus_tag=LLC55_08535 NZ_CP086200.1 Protein Homology CDS 1765324 1767120 . - 0 ID=cds-WP_069959808.1;Parent=gene-LLC55_RS08535;Dbxref=Genbank:WP_069959808.1;Name=WP_069959808.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=recQ;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155540.1;locus_tag=LLC55_RS08535;product=DNA helicase RecQ;protein_id=WP_069959808.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1767677 1768222 . - . ID=gene-LLC55_RS08540;Name=LLC55_RS08540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08540;old_locus_tag=LLC55_08540 NZ_CP086200.1 Protein Homology CDS 1767677 1768222 . - 0 ID=cds-WP_011408166.1;Parent=gene-LLC55_RS08540;Dbxref=Genbank:WP_011408166.1;Name=WP_011408166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364158.1;locus_tag=LLC55_RS08540;product=DNA starvation/stationary phase protection protein;protein_id=WP_011408166.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1768324 1772445 . + . ID=gene-LLC55_RS08545;Name=hrpA;gbkey=Gene;gene=hrpA;gene_biotype=protein_coding;locus_tag=LLC55_RS08545;old_locus_tag=LLC55_08545 NZ_CP086200.1 Protein Homology CDS 1768324 1772445 . + 0 ID=cds-WP_228329712.1;Parent=gene-LLC55_RS08545;Dbxref=Genbank:WP_228329712.1;Name=WP_228329712.1;Ontology_term=GO:0006139,GO:0004386;gbkey=CDS;gene=hrpA;go_function=helicase activity|0004386||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303863.1;locus_tag=LLC55_RS08545;product=ATP-dependent RNA helicase HrpA;protein_id=WP_228329712.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1772666 1775302 . - . ID=gene-LLC55_RS08550;Name=LLC55_RS08550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08550;old_locus_tag=LLC55_08550 NZ_CP086200.1 Protein Homology CDS 1772666 1775302 . - 0 ID=cds-WP_228329713.1;Parent=gene-LLC55_RS08550;Dbxref=Genbank:WP_228329713.1;Name=WP_228329713.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988680.1;locus_tag=LLC55_RS08550;product=TonB-dependent receptor;protein_id=WP_228329713.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1775404 1776443 . - . ID=gene-LLC55_RS08555;Name=LLC55_RS08555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08555;old_locus_tag=LLC55_08555;pseudo=true NZ_CP086200.1 Protein Homology CDS 1775404 1776443 . - 0 ID=cds-LLC55_RS08555;Parent=gene-LLC55_RS08555;Note=frameshifted%3B internal stop;Ontology_term=GO:0006096,GO:0004340;gbkey=CDS;go_function=glucokinase activity|0004340||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052049.1;locus_tag=LLC55_RS08555;product=glucokinase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1776744 1778258 . - . ID=gene-LLC55_RS08560;Name=LLC55_RS08560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08560;old_locus_tag=LLC55_08560 NZ_CP086200.1 Protein Homology CDS 1776744 1778258 . - 0 ID=cds-WP_041182063.1;Parent=gene-LLC55_RS08560;Dbxref=Genbank:WP_041182063.1;Name=WP_041182063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159318.1;locus_tag=LLC55_RS08560;product=PhoPQ-activated protein PqaA family protein;protein_id=WP_041182063.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1778429 1779192 . + . ID=gene-LLC55_RS08565;Name=LLC55_RS08565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08565;old_locus_tag=LLC55_08565 NZ_CP086200.1 Protein Homology CDS 1778429 1778744 . + 0 ID=cds-WP_094187782.1-3;Parent=gene-LLC55_RS08565;Dbxref=Genbank:WP_094187782.1;Name=WP_094187782.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS08565;product=IS5 family transposase;protein_id=WP_094187782.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1778744 1779192 . + 2 ID=cds-WP_094187782.1-3;Parent=gene-LLC55_RS08565;Dbxref=Genbank:WP_094187782.1;Name=WP_094187782.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS08565;product=IS5 family transposase;protein_id=WP_094187782.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1779503 1780015 . - . ID=gene-LLC55_RS08570;Name=LLC55_RS08570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08570;old_locus_tag=LLC55_08570 NZ_CP086200.1 Protein Homology CDS 1779503 1780015 . - 0 ID=cds-WP_011408171.1;Parent=gene-LLC55_RS08570;Dbxref=Genbank:WP_011408171.1;Name=WP_011408171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482518.1;locus_tag=LLC55_RS08570;product=hypothetical protein;protein_id=WP_011408171.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1780078 1781196 . - . ID=gene-LLC55_RS08575;Name=pqqE;gbkey=Gene;gene=pqqE;gene_biotype=protein_coding;locus_tag=LLC55_RS08575;old_locus_tag=LLC55_08575 NZ_CP086200.1 Protein Homology CDS 1780078 1781196 . - 0 ID=cds-WP_011408172.1;Parent=gene-LLC55_RS08575;Dbxref=Genbank:WP_011408172.1;Name=WP_011408172.1;Ontology_term=GO:0018149,GO:0018189;gbkey=CDS;gene=pqqE;go_process=peptide cross-linking|0018149||IEA,pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160183.1;locus_tag=LLC55_RS08575;product=pyrroloquinoline quinone biosynthesis protein PqqE;protein_id=WP_011408172.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1781193 1781471 . - . ID=gene-LLC55_RS08580;Name=pqqD;gbkey=Gene;gene=pqqD;gene_biotype=protein_coding;locus_tag=LLC55_RS08580;old_locus_tag=LLC55_08580 NZ_CP086200.1 Protein Homology CDS 1781193 1781471 . - 0 ID=cds-WP_011408173.1;Parent=gene-LLC55_RS08580;Dbxref=Genbank:WP_011408173.1;Name=WP_011408173.1;Ontology_term=GO:0018189,GO:0048038;gbkey=CDS;gene=pqqD;go_function=quinone binding|0048038||IEA;go_process=pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445334.1;locus_tag=LLC55_RS08580;product=pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;protein_id=WP_011408173.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1781468 1782220 . - . ID=gene-LLC55_RS08585;Name=pqqC;gbkey=Gene;gene=pqqC;gene_biotype=protein_coding;locus_tag=LLC55_RS08585;old_locus_tag=LLC55_08585 NZ_CP086200.1 Protein Homology CDS 1781468 1782220 . - 0 ID=cds-WP_011408174.1;Parent=gene-LLC55_RS08585;Dbxref=Genbank:WP_011408174.1;Name=WP_011408174.1;Ontology_term=GO:0018189;gbkey=CDS;gene=pqqC;go_process=pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437693.1;locus_tag=LLC55_RS08585;product=pyrroloquinoline-quinone synthase PqqC;protein_id=WP_011408174.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1782217 1783116 . - . ID=gene-LLC55_RS08590;Name=pqqB;gbkey=Gene;gene=pqqB;gene_biotype=protein_coding;locus_tag=LLC55_RS08590;old_locus_tag=LLC55_08590 NZ_CP086200.1 Protein Homology CDS 1782217 1783116 . - 0 ID=cds-WP_011258497.1;Parent=gene-LLC55_RS08590;Dbxref=Genbank:WP_011258497.1;Name=WP_011258497.1;Ontology_term=GO:0018189;gbkey=CDS;gene=pqqB;go_process=pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038060.1;locus_tag=LLC55_RS08590;product=pyrroloquinoline quinone biosynthesis protein PqqB;protein_id=WP_011258497.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1783200 1783280 . - . ID=gene-LLC55_RS08595;Name=pqqA;gbkey=Gene;gene=pqqA;gene_biotype=protein_coding;locus_tag=LLC55_RS08595;old_locus_tag=LLC55_08595 NZ_CP086200.1 Protein Homology CDS 1783200 1783280 . - 0 ID=cds-WP_002812057.1;Parent=gene-LLC55_RS08595;Dbxref=Genbank:WP_002812057.1;Name=WP_002812057.1;Ontology_term=GO:0018189,GO:0003824;gbkey=CDS;gene=pqqA;go_function=catalytic activity|0003824||IEA;go_process=pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: protein motif:HMM:NF001400.0;locus_tag=LLC55_RS08595;product=pyrroloquinoline quinone precursor peptide PqqA;protein_id=WP_002812057.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1783570 1785756 . + . ID=gene-LLC55_RS08600;Name=LLC55_RS08600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08600;old_locus_tag=LLC55_08600 NZ_CP086200.1 Protein Homology CDS 1783570 1785756 . + 0 ID=cds-WP_042464698.1;Parent=gene-LLC55_RS08600;Dbxref=Genbank:WP_042464698.1;Name=WP_042464698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090786.1;locus_tag=LLC55_RS08600;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_042464698.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1786046 1787488 . + . ID=gene-LLC55_RS08605;Name=LLC55_RS08605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08605;old_locus_tag=LLC55_08605 NZ_CP086200.1 Protein Homology CDS 1786046 1787488 . + 0 ID=cds-WP_042465507.1;Parent=gene-LLC55_RS08605;Dbxref=Genbank:WP_042465507.1;Name=WP_042465507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913689.1;locus_tag=LLC55_RS08605;product=hypothetical protein;protein_id=WP_042465507.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1787821 1789923 . - . ID=gene-LLC55_RS08610;Name=LLC55_RS08610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08610;old_locus_tag=LLC55_08610 NZ_CP086200.1 Protein Homology CDS 1787821 1789923 . - 0 ID=cds-WP_044756949.1;Parent=gene-LLC55_RS08610;Dbxref=Genbank:WP_044756949.1;Name=WP_044756949.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113094.1;locus_tag=LLC55_RS08610;product=glycosyltransferase;protein_id=WP_044756949.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1790165 1792609 . + . ID=gene-LLC55_RS08615;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;locus_tag=LLC55_RS08615;old_locus_tag=LLC55_08615 NZ_CP086200.1 Protein Homology CDS 1790165 1792609 . + 0 ID=cds-WP_069959810.1;Parent=gene-LLC55_RS08615;Dbxref=Genbank:WP_069959810.1;Name=WP_069959810.1;Ontology_term=GO:0009252,GO:0046677,GO:0008233,GO:0008658,GO:0008955,GO:0009274;gbkey=CDS;gene=mrcB;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=peptidase activity|0008233||IEA,penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116043.1;locus_tag=LLC55_RS08615;product=penicillin-binding protein 1B;protein_id=WP_069959810.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1792623 1793147 . + . ID=gene-LLC55_RS08620;Name=LLC55_RS08620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08620;old_locus_tag=LLC55_08620 NZ_CP086200.1 Protein Homology CDS 1792623 1793147 . + 0 ID=cds-WP_011408178.1;Parent=gene-LLC55_RS08620;Dbxref=Genbank:WP_011408178.1;Name=WP_011408178.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348248.1;locus_tag=LLC55_RS08620;product=hypothetical protein;protein_id=WP_011408178.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1793347 1795374 . + . ID=gene-LLC55_RS08625;Name=LLC55_RS08625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08625;old_locus_tag=LLC55_08625 NZ_CP086200.1 Protein Homology CDS 1793347 1795374 . + 0 ID=cds-WP_011408179.1;Parent=gene-LLC55_RS08625;Dbxref=Genbank:WP_011408179.1;Name=WP_011408179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258503.1;locus_tag=LLC55_RS08625;product=ATP-dependent DNA helicase;protein_id=WP_011408179.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1795388 1796107 . + . ID=gene-LLC55_RS08630;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=LLC55_RS08630;old_locus_tag=LLC55_08630 NZ_CP086200.1 Protein Homology CDS 1795388 1796107 . + 0 ID=cds-WP_011408180.1;Parent=gene-LLC55_RS08630;Dbxref=Genbank:WP_011408180.1;Name=WP_011408180.1;Ontology_term=GO:0006400,GO:0003725;gbkey=CDS;gene=tsaB;go_function=double-stranded RNA binding|0003725||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155557.1;locus_tag=LLC55_RS08630;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=WP_011408180.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1796104 1797018 . + . ID=gene-LLC55_RS08635;Name=LLC55_RS08635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08635;old_locus_tag=LLC55_08635 NZ_CP086200.1 Protein Homology CDS 1796104 1797018 . + 0 ID=cds-WP_011258505.1;Parent=gene-LLC55_RS08635;Dbxref=Genbank:WP_011258505.1;Name=WP_011258505.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364201.1;locus_tag=LLC55_RS08635;product=ADP-ribosylglycohydrolase family protein;protein_id=WP_011258505.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1797313 1798188 . - . ID=gene-LLC55_RS08640;Name=LLC55_RS08640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08640;old_locus_tag=LLC55_08640 NZ_CP086200.1 Protein Homology CDS 1797313 1798188 . - 0 ID=cds-WP_011258506.1;Parent=gene-LLC55_RS08640;Dbxref=Genbank:WP_011258506.1;Name=WP_011258506.1;Ontology_term=GO:0006810,GO:0015291;gbkey=CDS;go_function=secondary active transmembrane transporter activity|0015291||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159314.1;locus_tag=LLC55_RS08640;product=TonB family protein;protein_id=WP_011258506.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1798185 1799135 . - . ID=gene-LLC55_RS08645;Name=gshB;gbkey=Gene;gene=gshB;gene_biotype=protein_coding;locus_tag=LLC55_RS08645;old_locus_tag=LLC55_08645 NZ_CP086200.1 Protein Homology CDS 1798185 1799135 . - 0 ID=cds-WP_044756943.1;Parent=gene-LLC55_RS08645;Dbxref=Genbank:WP_044756943.1;Name=WP_044756943.1;Ontology_term=GO:0006750,GO:0004363;gbkey=CDS;gene=gshB;go_function=glutathione synthase activity|0004363||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038049.1;locus_tag=LLC55_RS08645;product=glutathione synthase;protein_id=WP_044756943.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1799385 1799786 . + . ID=gene-LLC55_RS08650;Name=pilG;gbkey=Gene;gene=pilG;gene_biotype=protein_coding;locus_tag=LLC55_RS08650;old_locus_tag=LLC55_08650 NZ_CP086200.1 Protein Homology CDS 1799385 1799786 . + 0 ID=cds-WP_005913706.1;Parent=gene-LLC55_RS08650;Dbxref=Genbank:WP_005913706.1;Name=WP_005913706.1;gbkey=CDS;gene=pilG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913706.1;locus_tag=LLC55_RS08650;product=twitching motility response regulator PilG;protein_id=WP_005913706.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1799804 1800166 . + . ID=gene-LLC55_RS08655;Name=LLC55_RS08655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08655;old_locus_tag=LLC55_08655 NZ_CP086200.1 Protein Homology CDS 1799804 1800166 . + 0 ID=cds-WP_011258508.1;Parent=gene-LLC55_RS08655;Dbxref=Genbank:WP_011258508.1;Name=WP_011258508.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450735.1;locus_tag=LLC55_RS08655;product=response regulator;protein_id=WP_011258508.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1800166 1800696 . + . ID=gene-LLC55_RS08660;Name=LLC55_RS08660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08660;old_locus_tag=LLC55_08660 NZ_CP086200.1 Protein Homology CDS 1800166 1800696 . + 0 ID=cds-WP_003482487.1;Parent=gene-LLC55_RS08660;Dbxref=Genbank:WP_003482487.1;Name=WP_003482487.1;Ontology_term=GO:0006935,GO:0007165;gbkey=CDS;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508568.1;locus_tag=LLC55_RS08660;product=chemotaxis protein CheW;protein_id=WP_003482487.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1800736 1802772 . + . ID=gene-LLC55_RS08665;Name=LLC55_RS08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08665;old_locus_tag=LLC55_08665 NZ_CP086200.1 Protein Homology CDS 1800736 1802772 . + 0 ID=cds-WP_011258510.1;Parent=gene-LLC55_RS08665;Dbxref=Genbank:WP_011258510.1;Name=WP_011258510.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988635.1;locus_tag=LLC55_RS08665;product=methyl-accepting chemotaxis protein;protein_id=WP_011258510.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1802886 1809812 . + . ID=gene-LLC55_RS08670;Name=LLC55_RS08670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08670;old_locus_tag=LLC55_08670 NZ_CP086200.1 Protein Homology CDS 1802886 1809812 . + 0 ID=cds-WP_069963843.1;Parent=gene-LLC55_RS08670;Dbxref=Genbank:WP_069963843.1;Name=WP_069963843.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158585.1;locus_tag=LLC55_RS08670;product=Hpt domain-containing protein;protein_id=WP_069963843.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1809820 1811022 . + . ID=gene-LLC55_RS08675;Name=LLC55_RS08675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08675;old_locus_tag=LLC55_08675 NZ_CP086200.1 Protein Homology CDS 1809820 1811022 . + 0 ID=cds-WP_011408184.1;Parent=gene-LLC55_RS08675;Dbxref=Genbank:WP_011408184.1;Name=WP_011408184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988631.1;locus_tag=LLC55_RS08675;product=hypothetical protein;protein_id=WP_011408184.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1811056 1811532 . + . ID=gene-LLC55_RS08680;Name=LLC55_RS08680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08680;old_locus_tag=LLC55_08680 NZ_CP086200.1 Protein Homology CDS 1811056 1811532 . + 0 ID=cds-WP_011258512.1;Parent=gene-LLC55_RS08680;Dbxref=Genbank:WP_011258512.1;Name=WP_011258512.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482475.1;locus_tag=LLC55_RS08680;product=chemotaxis protein CheW;protein_id=WP_011258512.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1811783 1812406 . + . ID=gene-LLC55_RS08685;Name=LLC55_RS08685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08685;old_locus_tag=LLC55_08685 NZ_CP086200.1 Protein Homology CDS 1811783 1812406 . + 0 ID=cds-WP_011258513.1;Parent=gene-LLC55_RS08685;Dbxref=Genbank:WP_011258513.1;Name=WP_011258513.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445323.1;locus_tag=LLC55_RS08685;product=GNAT family N-acetyltransferase;protein_id=WP_011258513.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1812418 1813500 . - . ID=gene-LLC55_RS08690;Name=LLC55_RS08690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08690;old_locus_tag=LLC55_08690 NZ_CP086200.1 Protein Homology CDS 1812418 1813500 . - 0 ID=cds-WP_011408185.1;Parent=gene-LLC55_RS08690;Dbxref=Genbank:WP_011408185.1;Name=WP_011408185.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011000070.1;locus_tag=LLC55_RS08690;product=IS630 family transposase;protein_id=WP_011408185.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1814729 1815214 . - . ID=gene-LLC55_RS08695;Name=LLC55_RS08695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08695;old_locus_tag=LLC55_08695 NZ_CP086200.1 Protein Homology CDS 1814729 1815214 . - 0 ID=cds-WP_229001931.1;Parent=gene-LLC55_RS08695;Dbxref=Genbank:WP_229001931.1;Name=WP_229001931.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023459.2;locus_tag=LLC55_RS08695;product=DUF3520 domain-containing protein;protein_id=WP_229001931.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1815235 1816200 . - . ID=gene-LLC55_RS08700;Name=LLC55_RS08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08700;old_locus_tag=LLC55_08700 NZ_CP086200.1 Protein Homology CDS 1815235 1816200 . - 0 ID=cds-WP_228329714.1;Parent=gene-LLC55_RS08700;Dbxref=Genbank:WP_228329714.1;Name=WP_228329714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258516.1;locus_tag=LLC55_RS08700;product=von Willebrand factor type A domain-containing protein;protein_id=WP_228329714.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1816743 1817704 . + . ID=gene-LLC55_RS08705;Name=LLC55_RS08705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08705;old_locus_tag=LLC55_08705;pseudo=true NZ_CP086200.1 Protein Homology CDS 1816743 1817704 . + 0 ID=cds-LLC55_RS08705;Parent=gene-LLC55_RS08705;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182294.1;locus_tag=LLC55_RS08705;product=IS1595-like element ISXo2 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1818122 1819186 . + . ID=gene-LLC55_RS08710;Name=LLC55_RS08710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08710;old_locus_tag=LLC55_08710 NZ_CP086200.1 Protein Homology CDS 1818122 1819186 . + 0 ID=cds-WP_011258518.1;Parent=gene-LLC55_RS08710;Dbxref=Genbank:WP_011258518.1;Name=WP_011258518.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038037.1;locus_tag=LLC55_RS08710;product=N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase;protein_id=WP_011258518.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1819183 1819914 . + . ID=gene-LLC55_RS08715;Name=LLC55_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08715;old_locus_tag=LLC55_08715 NZ_CP086200.1 Protein Homology CDS 1819183 1819914 . + 0 ID=cds-WP_011258519.1;Parent=gene-LLC55_RS08715;Dbxref=Genbank:WP_011258519.1;Name=WP_011258519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258519.1;locus_tag=LLC55_RS08715;product=copper homeostasis protein CutC;protein_id=WP_011258519.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1819939 1821627 . - . ID=gene-LLC55_RS08720;Name=xopL;gbkey=Gene;gene=xopL;gene_biotype=protein_coding;locus_tag=LLC55_RS08720;old_locus_tag=LLC55_08720 NZ_CP086200.1 Protein Homology CDS 1819939 1821627 . - 0 ID=cds-WP_041182065.1;Parent=gene-LLC55_RS08720;Dbxref=Genbank:WP_041182065.1;Name=WP_041182065.1;Ontology_term=GO:0030254;gbkey=CDS;gene=xopL;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915126.1;locus_tag=LLC55_RS08720;product=type III secretion system leucine-rich repeat domain-containing effector protein XopL;protein_id=WP_041182065.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1821980 1823142 . - . ID=gene-LLC55_RS08725;Name=LLC55_RS08725;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08725;old_locus_tag=LLC55_08725;pseudo=true NZ_CP086200.1 Protein Homology CDS 1821980 1823142 . - 0 ID=cds-LLC55_RS08725;Parent=gene-LLC55_RS08725;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090770.1;locus_tag=LLC55_RS08725;product=exo-alpha-sialidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1823522 1823629 . + . ID=gene-LLC55_RS08730;Name=LLC55_RS08730;end_range=1823629,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08730;old_locus_tag=LLC55_08730;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1823522 1823629 . + 0 ID=cds-LLC55_RS08730;Parent=gene-LLC55_RS08730;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1823629,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155568.1;locus_tag=LLC55_RS08730;partial=true;product=RebB family R body protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1823642 1824877 . - . ID=gene-LLC55_RS08735;Name=LLC55_RS08735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08735;old_locus_tag=LLC55_08735 NZ_CP086200.1 Protein Homology CDS 1823642 1824877 . - 0 ID=cds-WP_011408191.1;Parent=gene-LLC55_RS08735;Dbxref=Genbank:WP_011408191.1;Name=WP_011408191.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS08735;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011408191.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1824941 1825162 . + . ID=gene-LLC55_RS08740;Name=LLC55_RS08740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08740;old_locus_tag=LLC55_08740;partial=true;pseudo=true;start_range=.,1824941 NZ_CP086200.1 Protein Homology CDS 1824941 1825162 . + 0 ID=cds-LLC55_RS08740;Parent=gene-LLC55_RS08740;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155568.1;locus_tag=LLC55_RS08740;partial=true;product=RebB family R body protein;pseudo=true;start_range=.,1824941;transl_table=11 NZ_CP086200.1 RefSeq gene 1825220 1825420 . - . ID=gene-LLC55_RS08745;Name=LLC55_RS08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08745;old_locus_tag=LLC55_08745 NZ_CP086200.1 Protein Homology CDS 1825220 1825420 . - 0 ID=cds-WP_011408193.1;Parent=gene-LLC55_RS08745;Dbxref=Genbank:WP_011408193.1;Name=WP_011408193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408193.1;locus_tag=LLC55_RS08745;product=hypothetical protein;protein_id=WP_011408193.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1825927 1828569 . + . ID=gene-LLC55_RS08750;Name=xopK;gbkey=Gene;gene=xopK;gene_biotype=protein_coding;locus_tag=LLC55_RS08750;old_locus_tag=LLC55_08750 NZ_CP086200.1 Protein Homology CDS 1825927 1828569 . + 0 ID=cds-WP_267910886.1;Parent=gene-LLC55_RS08750;Dbxref=Genbank:WP_267910886.1;Name=WP_267910886.1;Ontology_term=GO:0030254;gbkey=CDS;gene=xopK;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304367.1;locus_tag=LLC55_RS08750;product=type III secretion system effector protein XopK;protein_id=WP_267910886.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1828619 1830460 . - . ID=gene-LLC55_RS08755;Name=LLC55_RS08755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08755;old_locus_tag=LLC55_08755 NZ_CP086200.1 Protein Homology CDS 1828619 1830460 . - 0 ID=cds-WP_011408196.1;Parent=gene-LLC55_RS08755;Dbxref=Genbank:WP_011408196.1;Name=WP_011408196.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173652.1;locus_tag=LLC55_RS08755;product=beta-galactosidase;protein_id=WP_011408196.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1830637 1830713 . + . ID=gene-LLC55_RS08760;Name=LLC55_RS08760;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS08760;old_locus_tag=LLC55_08760 NZ_CP086200.1 cmsearch ncRNA 1830637 1830713 . + . ID=rna-LLC55_RS08760;Parent=gene-LLC55_RS08760;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS08760;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1830637 1830713 . + . ID=exon-LLC55_RS08760-1;Parent=rna-LLC55_RS08760;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS08760;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1830740 1833082 . - . ID=gene-LLC55_RS08765;Name=LLC55_RS08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08765;old_locus_tag=LLC55_08765 NZ_CP086200.1 Protein Homology CDS 1830740 1833082 . - 0 ID=cds-WP_011408197.1;Parent=gene-LLC55_RS08765;Dbxref=Genbank:WP_011408197.1;Name=WP_011408197.1;Ontology_term=GO:0005975,GO:0030246;gbkey=CDS;go_function=carbohydrate binding|0030246||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155572.1;locus_tag=LLC55_RS08765;product=GH92 family glycosyl hydrolase;protein_id=WP_011408197.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1833218 1834681 . - . ID=gene-LLC55_RS08770;Name=LLC55_RS08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08770;old_locus_tag=LLC55_08770 NZ_CP086200.1 Protein Homology CDS 1833218 1834681 . - 0 ID=cds-WP_011258527.1;Parent=gene-LLC55_RS08770;Dbxref=Genbank:WP_011258527.1;Name=WP_011258527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813906.1;locus_tag=LLC55_RS08770;product=glycoside hydrolase family 125 protein;protein_id=WP_011258527.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1834918 1835220 . + . ID=gene-LLC55_RS08775;Name=LLC55_RS08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08775;old_locus_tag=LLC55_08775 NZ_CP086200.1 GeneMarkS-2+ CDS 1834918 1835220 . + 0 ID=cds-WP_011408198.1;Parent=gene-LLC55_RS08775;Dbxref=Genbank:WP_011408198.1;Name=WP_011408198.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS08775;product=hypothetical protein;protein_id=WP_011408198.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1835392 1836036 . + . ID=gene-LLC55_RS08780;Name=LLC55_RS08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08780;old_locus_tag=LLC55_08780 NZ_CP086200.1 Protein Homology CDS 1835392 1836036 . + 0 ID=cds-WP_228329715.1;Parent=gene-LLC55_RS08780;Dbxref=Genbank:WP_228329715.1;Name=WP_228329715.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024923.2;locus_tag=LLC55_RS08780;product=biotin/lipoyl-binding protein;protein_id=WP_228329715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1836050 1836265 . + . ID=gene-LLC55_RS08785;Name=LLC55_RS08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08785;old_locus_tag=LLC55_08785 NZ_CP086200.1 Protein Homology CDS 1836050 1836265 . + 0 ID=cds-WP_228329716.1;Parent=gene-LLC55_RS08785;Dbxref=Genbank:WP_228329716.1;Name=WP_228329716.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376789.1;locus_tag=LLC55_RS08785;product=hypothetical protein;protein_id=WP_228329716.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1836319 1836720 . + . ID=gene-LLC55_RS08790;Name=LLC55_RS08790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08790;old_locus_tag=LLC55_08790 NZ_CP086200.1 Protein Homology CDS 1836319 1836720 . + 0 ID=cds-WP_011408200.1;Parent=gene-LLC55_RS08790;Dbxref=Genbank:WP_011408200.1;Name=WP_011408200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365311.1;locus_tag=LLC55_RS08790;product=hypothetical protein;protein_id=WP_011408200.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1836798 1837076 . + . ID=gene-LLC55_RS08795;Name=LLC55_RS08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08795;old_locus_tag=LLC55_08795 NZ_CP086200.1 Protein Homology CDS 1836798 1837076 . + 0 ID=cds-WP_012445311.1;Parent=gene-LLC55_RS08795;Dbxref=Genbank:WP_012445311.1;Name=WP_012445311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113105.1;locus_tag=LLC55_RS08795;product=hypothetical protein;protein_id=WP_012445311.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1837073 1838317 . + . ID=gene-LLC55_RS08800;Name=LLC55_RS08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08800;old_locus_tag=LLC55_08800 NZ_CP086200.1 Protein Homology CDS 1837073 1838317 . + 0 ID=cds-WP_011408202.1;Parent=gene-LLC55_RS08800;Dbxref=Genbank:WP_011408202.1;Name=WP_011408202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445310.1;locus_tag=LLC55_RS08800;product=HlyD family efflux transporter periplasmic adaptor subunit;protein_id=WP_011408202.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1838763 1838933 . + . ID=gene-LLC55_RS08805;Name=LLC55_RS08805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08805;old_locus_tag=LLC55_08805 NZ_CP086200.1 Protein Homology CDS 1838763 1838933 . + 0 ID=cds-WP_162866903.1;Parent=gene-LLC55_RS08805;Dbxref=Genbank:WP_162866903.1;Name=WP_162866903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005419266.1;locus_tag=LLC55_RS08805;product=hypothetical protein;protein_id=WP_162866903.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1839264 1840130 . + . ID=gene-LLC55_RS08810;Name=LLC55_RS08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08810;old_locus_tag=LLC55_08810 NZ_CP086200.1 GeneMarkS-2+ CDS 1839264 1840130 . + 0 ID=cds-WP_228329717.1;Parent=gene-LLC55_RS08810;Dbxref=Genbank:WP_228329717.1;Name=WP_228329717.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS08810;product=hypothetical protein;protein_id=WP_228329717.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1840205 1840798 . + . ID=gene-LLC55_RS08815;Name=LLC55_RS08815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08815;old_locus_tag=LLC55_08815 NZ_CP086200.1 Protein Homology CDS 1840205 1840798 . + 0 ID=cds-WP_228329718.1;Parent=gene-LLC55_RS08815;Dbxref=Genbank:WP_228329718.1;Name=WP_228329718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370261.1;locus_tag=LLC55_RS08815;product=hypothetical protein;protein_id=WP_228329718.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1841034 1841216 . - . ID=gene-LLC55_RS08820;Name=LLC55_RS08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08820;old_locus_tag=LLC55_08820 NZ_CP086200.1 GeneMarkS-2+ CDS 1841034 1841216 . - 0 ID=cds-WP_042464706.1;Parent=gene-LLC55_RS08820;Dbxref=Genbank:WP_042464706.1;Name=WP_042464706.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS08820;product=hypothetical protein;protein_id=WP_042464706.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1841434 1841589 . + . ID=gene-LLC55_RS08825;Name=LLC55_RS08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08825;old_locus_tag=LLC55_08825 NZ_CP086200.1 Protein Homology CDS 1841434 1841589 . + 0 ID=cds-WP_229001916.1;Parent=gene-LLC55_RS08825;Dbxref=Genbank:WP_229001916.1;Name=WP_229001916.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013827.2;locus_tag=LLC55_RS08825;product=hypothetical protein;protein_id=WP_229001916.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1841593 1842829 . - . ID=gene-LLC55_RS08830;Name=LLC55_RS08830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08830;old_locus_tag=LLC55_08830;pseudo=true NZ_CP086200.1 Protein Homology CDS 1841593 1842829 . - 0 ID=cds-LLC55_RS08830;Parent=gene-LLC55_RS08830;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS08830;product=ISL3-like element ISXoo13 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1842874 1843014 . - . ID=gene-LLC55_RS08835;Name=LLC55_RS08835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08835;old_locus_tag=LLC55_08835 NZ_CP086200.1 GeneMarkS-2+ CDS 1842874 1843014 . - 0 ID=cds-WP_228329772.1;Parent=gene-LLC55_RS08835;Dbxref=Genbank:WP_228329772.1;Name=WP_228329772.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS08835;product=hypothetical protein;protein_id=WP_228329772.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1842992 1845052 . + . ID=gene-LLC55_RS08840;Name=LLC55_RS08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08840;old_locus_tag=LLC55_08840 NZ_CP086200.1 Protein Homology CDS 1842992 1845052 . + 0 ID=cds-WP_229001930.1;Parent=gene-LLC55_RS08840;Dbxref=Genbank:WP_229001930.1;Name=WP_229001930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370257.1;locus_tag=LLC55_RS08840;product=peptidase domain-containing ABC transporter;protein_id=WP_229001930.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1845198 1847867 . - . ID=gene-LLC55_RS08845;Name=LLC55_RS08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08845;old_locus_tag=LLC55_08845 NZ_CP086200.1 Protein Homology CDS 1845198 1847867 . - 0 ID=cds-WP_011408205.1;Parent=gene-LLC55_RS08845;Dbxref=Genbank:WP_011408205.1;Name=WP_011408205.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155574.1;locus_tag=LLC55_RS08845;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=WP_011408205.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1848072 1850753 . - . ID=gene-LLC55_RS08850;Name=LLC55_RS08850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08850;old_locus_tag=LLC55_08850 NZ_CP086200.1 Protein Homology CDS 1848072 1850753 . - 0 ID=cds-WP_011408206.1;Parent=gene-LLC55_RS08850;Dbxref=Genbank:WP_011408206.1;Name=WP_011408206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504091.1;locus_tag=LLC55_RS08850;product=glycoside hydrolase family 2 protein;protein_id=WP_011408206.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1850775 1853225 . - . ID=gene-LLC55_RS08855;Name=LLC55_RS08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08855;old_locus_tag=LLC55_08855 NZ_CP086200.1 Protein Homology CDS 1850775 1853225 . - 0 ID=cds-WP_042464709.1;Parent=gene-LLC55_RS08855;Dbxref=Genbank:WP_042464709.1;Name=WP_042464709.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118915.1;locus_tag=LLC55_RS08855;product=family 20 glycosylhydrolase;protein_id=WP_042464709.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1853488 1853561 . - . ID=gene-LLC55_RS08860;Name=LLC55_RS08860;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS08860;old_locus_tag=LLC55_08860 NZ_CP086200.1 cmsearch ncRNA 1853488 1853561 . - . ID=rna-LLC55_RS08860;Parent=gene-LLC55_RS08860;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS08860;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1853488 1853561 . - . ID=exon-LLC55_RS08860-1;Parent=rna-LLC55_RS08860;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS08860;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1853623 1854690 . - . ID=gene-LLC55_RS08865;Name=LLC55_RS08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08865;old_locus_tag=LLC55_08865 NZ_CP086200.1 Protein Homology CDS 1853623 1854690 . - 0 ID=cds-WP_011258536.1;Parent=gene-LLC55_RS08865;Dbxref=Genbank:WP_011258536.1;Name=WP_011258536.1;Ontology_term=GO:0005975;gbkey=CDS;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090759.1;locus_tag=LLC55_RS08865;product=glycosyl hydrolase family 18 protein;protein_id=WP_011258536.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1854694 1856379 . - . ID=gene-LLC55_RS08870;Name=LLC55_RS08870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08870;old_locus_tag=LLC55_08870 NZ_CP086200.1 Protein Homology CDS 1854694 1856379 . - 0 ID=cds-WP_044756938.1;Parent=gene-LLC55_RS08870;Dbxref=Genbank:WP_044756938.1;Name=WP_044756938.1;Ontology_term=GO:0005975,GO:0004560;gbkey=CDS;go_function=alpha-L-fucosidase activity|0004560||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161486.1;locus_tag=LLC55_RS08870;product=alpha-L-fucosidase;protein_id=WP_044756938.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1856587 1859280 . - . ID=gene-LLC55_RS08875;Name=LLC55_RS08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08875;old_locus_tag=LLC55_08875 NZ_CP086200.1 Protein Homology CDS 1856587 1859280 . - 0 ID=cds-WP_069963845.1;Parent=gene-LLC55_RS08875;Dbxref=Genbank:WP_069963845.1;Name=WP_069963845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164668.1;locus_tag=LLC55_RS08875;product=TonB-dependent receptor;protein_id=WP_069963845.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1860002 1861000 . + . ID=gene-LLC55_RS08880;Name=LLC55_RS08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08880;old_locus_tag=LLC55_08880 NZ_CP086200.1 Protein Homology CDS 1860002 1861000 . + 0 ID=cds-WP_027703406.1;Parent=gene-LLC55_RS08880;Dbxref=Genbank:WP_027703406.1;Name=WP_027703406.1;Ontology_term=GO:0006096,GO:0004340;gbkey=CDS;go_function=glucokinase activity|0004340||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988601.1;locus_tag=LLC55_RS08880;product=glucokinase;protein_id=WP_027703406.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1861302 1862036 . - . ID=gene-LLC55_RS08885;Name=LLC55_RS08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08885;old_locus_tag=LLC55_08885 NZ_CP086200.1 Protein Homology CDS 1861302 1862036 . - 0 ID=cds-WP_011258540.1;Parent=gene-LLC55_RS08885;Dbxref=Genbank:WP_011258540.1;Name=WP_011258540.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931477.1;locus_tag=LLC55_RS08885;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=WP_011258540.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1862027 1863445 . - . ID=gene-LLC55_RS08890;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=LLC55_RS08890;old_locus_tag=LLC55_08890 NZ_CP086200.1 Protein Homology CDS 1862027 1863445 . - 0 ID=cds-WP_011258541.1;Parent=gene-LLC55_RS08890;Dbxref=Genbank:WP_011258541.1;Name=WP_011258541.1;Ontology_term=GO:0009102,GO:0004015;gbkey=CDS;gene=bioA;go_function=adenosylmethionine-8-amino-7-oxononanoate transaminase activity|0004015||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851465.1;locus_tag=LLC55_RS08890;product=adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=WP_011258541.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1863487 1864035 . + . ID=gene-LLC55_RS08895;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=LLC55_RS08895;old_locus_tag=LLC55_08895 NZ_CP086200.1 Protein Homology CDS 1863487 1864035 . + 0 ID=cds-WP_011408213.1;Parent=gene-LLC55_RS08895;Dbxref=Genbank:WP_011408213.1;Name=WP_011408213.1;Ontology_term=GO:0016787;gbkey=CDS;gene=nudE;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090754.1;locus_tag=LLC55_RS08895;product=ADP compounds hydrolase NudE;protein_id=WP_011408213.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1864032 1864832 . + . ID=gene-LLC55_RS08900;Name=cysQ;gbkey=Gene;gene=cysQ;gene_biotype=protein_coding;locus_tag=LLC55_RS08900;old_locus_tag=LLC55_08900 NZ_CP086200.1 Protein Homology CDS 1864032 1864832 . + 0 ID=cds-WP_011258542.1;Parent=gene-LLC55_RS08900;Dbxref=Genbank:WP_011258542.1;Name=WP_011258542.1;Ontology_term=GO:0006790,GO:0008441;gbkey=CDS;gene=cysQ;go_function=3'(2')%2C5'-bisphosphate nucleotidase activity|0008441||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811298.1;locus_tag=LLC55_RS08900;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=WP_011258542.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1865075 1866094 . + . ID=gene-LLC55_RS08905;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=LLC55_RS08905;old_locus_tag=LLC55_08905 NZ_CP086200.1 Protein Homology CDS 1865075 1866094 . + 0 ID=cds-WP_011408214.1;Parent=gene-LLC55_RS08905;Dbxref=Genbank:WP_011408214.1;Name=WP_011408214.1;gbkey=CDS;gene=mazG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851467.1;locus_tag=LLC55_RS08905;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_011408214.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1866091 1866428 . + . ID=gene-LLC55_RS08910;Name=LLC55_RS08910;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08910;old_locus_tag=LLC55_08910;pseudo=true NZ_CP086200.1 Protein Homology CDS 1866091 1866428 . + 0 ID=cds-LLC55_RS08910;Parent=gene-LLC55_RS08910;Note=frameshifted;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482423.1;locus_tag=LLC55_RS08910;product=YnfA family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1866521 1866597 . - . ID=gene-LLC55_RS08915;Name=LLC55_RS08915;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS08915;old_locus_tag=LLC55_08915 NZ_CP086200.1 cmsearch ncRNA 1866521 1866597 . - . ID=rna-LLC55_RS08915;Parent=gene-LLC55_RS08915;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS08915;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1866521 1866597 . - . ID=exon-LLC55_RS08915-1;Parent=rna-LLC55_RS08915;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS08915;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1866726 1867691 . + . ID=gene-LLC55_RS08920;Name=LLC55_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08920;old_locus_tag=LLC55_08920 NZ_CP086200.1 Protein Homology CDS 1866726 1867691 . + 0 ID=cds-WP_075242177.1;Parent=gene-LLC55_RS08920;Dbxref=Genbank:WP_075242177.1;Name=WP_075242177.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237420.1;locus_tag=LLC55_RS08920;product=SPFH/Band 7/PHB domain protein;protein_id=WP_075242177.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1867695 1868129 . + . ID=gene-LLC55_RS08925;Name=LLC55_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08925;old_locus_tag=LLC55_08925 NZ_CP086200.1 Protein Homology CDS 1867695 1868129 . + 0 ID=cds-WP_075242176.1;Parent=gene-LLC55_RS08925;Dbxref=Genbank:WP_075242176.1;Name=WP_075242176.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113316.1;locus_tag=LLC55_RS08925;product=NfeD family protein;protein_id=WP_075242176.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1868302 1869411 . + . ID=gene-LLC55_RS08930;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=LLC55_RS08930;old_locus_tag=LLC55_08930 NZ_CP086200.1 Protein Homology CDS 1868302 1869411 . + 0 ID=cds-WP_069964920.1;Parent=gene-LLC55_RS08930;Dbxref=Genbank:WP_069964920.1;Name=WP_069964920.1;Ontology_term=GO:0019464,GO:0004047,GO:0005737;gbkey=CDS;gene=gcvT;go_component=cytoplasm|0005737||IEA;go_function=aminomethyltransferase activity|0004047||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931494.1;locus_tag=LLC55_RS08930;product=glycine cleavage system aminomethyltransferase GcvT;protein_id=WP_069964920.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1869548 1869943 . + . ID=gene-LLC55_RS08935;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;locus_tag=LLC55_RS08935;old_locus_tag=LLC55_08935 NZ_CP086200.1 Protein Homology CDS 1869548 1869943 . + 0 ID=cds-WP_011258549.1;Parent=gene-LLC55_RS08935;Dbxref=Genbank:WP_011258549.1;Name=WP_011258549.1;Ontology_term=GO:0019464,GO:0003824;gbkey=CDS;gene=gcvH;go_function=catalytic activity|0003824||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368686.1;locus_tag=LLC55_RS08935;product=glycine cleavage system protein GcvH;protein_id=WP_011258549.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1870325 1870600 . - . ID=gene-LLC55_RS08940;Name=LLC55_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08940;old_locus_tag=LLC55_08940 NZ_CP086200.1 GeneMarkS-2+ CDS 1870325 1870600 . - 0 ID=cds-WP_082322925.1;Parent=gene-LLC55_RS08940;Dbxref=Genbank:WP_082322925.1;Name=WP_082322925.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS08940;product=hypothetical protein;protein_id=WP_082322925.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1870954 1871373 . - . ID=gene-LLC55_RS08945;Name=LLC55_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08945;old_locus_tag=LLC55_08945 NZ_CP086200.1 Protein Homology CDS 1870954 1871373 . - 0 ID=cds-WP_027703405.1;Parent=gene-LLC55_RS08945;Dbxref=Genbank:WP_027703405.1;Name=WP_027703405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116305.1;locus_tag=LLC55_RS08945;product=hypothetical protein;protein_id=WP_027703405.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1872312 1873655 . - . ID=gene-LLC55_RS08950;Name=LLC55_RS08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08950;old_locus_tag=LLC55_08950 NZ_CP086200.1 Protein Homology CDS 1872312 1873655 . - 0 ID=cds-WP_012445290.1;Parent=gene-LLC55_RS08950;Dbxref=Genbank:WP_012445290.1;Name=WP_012445290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504072.1;locus_tag=LLC55_RS08950;product=serine hydrolase domain-containing protein;protein_id=WP_012445290.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1873768 1873941 . + . ID=gene-LLC55_RS08955;Name=LLC55_RS08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08955;old_locus_tag=LLC55_08955 NZ_CP086200.1 GeneMarkS-2+ CDS 1873768 1873941 . + 0 ID=cds-WP_153303308.1;Parent=gene-LLC55_RS08955;Dbxref=Genbank:WP_153303308.1;Name=WP_153303308.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS08955;product=hypothetical protein;protein_id=WP_153303308.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1874020 1875378 . + . ID=gene-LLC55_RS08960;Name=LLC55_RS08960;end_range=1875378,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS08960;old_locus_tag=LLC55_08960;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1874020 1875378 . + 0 ID=cds-LLC55_RS08960;Parent=gene-LLC55_RS08960;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0055085,GO:0022857;end_range=1875378,.;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849238.1;locus_tag=LLC55_RS08960;partial=true;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1875666 1876019 . + . ID=gene-LLC55_RS08965;Name=LLC55_RS08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08965;old_locus_tag=LLC55_08965 NZ_CP086200.1 Protein Homology CDS 1875666 1876019 . + 0 ID=cds-WP_011408219.1;Parent=gene-LLC55_RS08965;Dbxref=Genbank:WP_011408219.1;Name=WP_011408219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302742.1;locus_tag=LLC55_RS08965;product=DUF1304 domain-containing protein;protein_id=WP_011408219.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1876414 1878888 . - . ID=gene-LLC55_RS08970;Name=LLC55_RS08970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08970;old_locus_tag=LLC55_08970 NZ_CP086200.1 Protein Homology CDS 1876414 1878888 . - 0 ID=cds-WP_011408220.1;Parent=gene-LLC55_RS08970;Dbxref=Genbank:WP_011408220.1;Name=WP_011408220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090746.1;locus_tag=LLC55_RS08970;product=acyl-CoA dehydrogenase;protein_id=WP_011408220.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1878885 1879778 . - . ID=gene-LLC55_RS08975;Name=LLC55_RS08975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08975;old_locus_tag=LLC55_08975 NZ_CP086200.1 Protein Homology CDS 1878885 1879778 . - 0 ID=cds-WP_027703403.1;Parent=gene-LLC55_RS08975;Dbxref=Genbank:WP_027703403.1;Name=WP_027703403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166286.1;locus_tag=LLC55_RS08975;product=alpha/beta hydrolase;protein_id=WP_027703403.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1879915 1880523 . + . ID=gene-LLC55_RS08980;Name=LLC55_RS08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08980;old_locus_tag=LLC55_08980 NZ_CP086200.1 Protein Homology CDS 1879915 1880523 . + 0 ID=cds-WP_011408222.1;Parent=gene-LLC55_RS08980;Dbxref=Genbank:WP_011408222.1;Name=WP_011408222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988563.1;locus_tag=LLC55_RS08980;product=TetR/AcrR family transcriptional regulator;protein_id=WP_011408222.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1880632 1883541 . - . ID=gene-LLC55_RS08985;Name=LLC55_RS08985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08985;old_locus_tag=LLC55_08985 NZ_CP086200.1 Protein Homology CDS 1880632 1883541 . - 0 ID=cds-WP_011408223.1;Parent=gene-LLC55_RS08985;Dbxref=Genbank:WP_011408223.1;Name=WP_011408223.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258556.1;locus_tag=LLC55_RS08985;product=TonB-dependent receptor;protein_id=WP_011408223.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1883789 1884625 . - . ID=gene-LLC55_RS08990;Name=LLC55_RS08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08990;old_locus_tag=LLC55_08990 NZ_CP086200.1 Protein Homology CDS 1883789 1884625 . - 0 ID=cds-WP_027703402.1;Parent=gene-LLC55_RS08990;Dbxref=Genbank:WP_027703402.1;Name=WP_027703402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572079.1;locus_tag=LLC55_RS08990;product=hypothetical protein;protein_id=WP_027703402.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1884779 1885669 . - . ID=gene-LLC55_RS08995;Name=LLC55_RS08995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS08995;old_locus_tag=LLC55_08995 NZ_CP086200.1 Protein Homology CDS 1884779 1885669 . - 0 ID=cds-WP_011408224.1;Parent=gene-LLC55_RS08995;Dbxref=Genbank:WP_011408224.1;Name=WP_011408224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368716.1;locus_tag=LLC55_RS08995;product=Hsp33 family molecular chaperone HslO;protein_id=WP_011408224.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1885744 1886481 . + . ID=gene-LLC55_RS09000;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=LLC55_RS09000;old_locus_tag=LLC55_09000 NZ_CP086200.1 Protein Homology CDS 1885744 1886481 . + 0 ID=cds-WP_011258559.1;Parent=gene-LLC55_RS09000;Dbxref=Genbank:WP_011258559.1;Name=WP_011258559.1;Ontology_term=GO:0009252,GO:0009274,GO:0016020;gbkey=CDS;gene=mtgA;go_component=peptidoglycan-based cell wall|0009274||IEA,membrane|0016020||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037989.1;locus_tag=LLC55_RS09000;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=WP_011258559.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1886484 1887530 . + . ID=gene-LLC55_RS09005;Name=LLC55_RS09005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09005;old_locus_tag=LLC55_09005 NZ_CP086200.1 Protein Homology CDS 1886484 1887530 . + 0 ID=cds-WP_011408225.1;Parent=gene-LLC55_RS09005;Dbxref=Genbank:WP_011408225.1;Name=WP_011408225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157863.1;locus_tag=LLC55_RS09005;product=glycosyltransferase family 2 protein;protein_id=WP_011408225.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1887490 1887918 . + . ID=gene-LLC55_RS09010;Name=LLC55_RS09010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09010;old_locus_tag=LLC55_09010;pseudo=true NZ_CP086200.1 Protein Homology CDS 1887490 1887918 . + 0 ID=cds-LLC55_RS09010;Parent=gene-LLC55_RS09010;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090742.1;locus_tag=LLC55_RS09010;product=CBS domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1888050 1888391 . - . ID=gene-LLC55_RS09015;Name=LLC55_RS09015;end_range=1888391,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09015;old_locus_tag=LLC55_09015;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1888050 1888391 . - 0 ID=cds-LLC55_RS09015;Parent=gene-LLC55_RS09015;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1888391,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011000070.1;locus_tag=LLC55_RS09015;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1888391 1889214 . - . ID=gene-LLC55_RS09020;Name=LLC55_RS09020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09020;old_locus_tag=LLC55_09020;partial=true;pseudo=true;start_range=.,1888391 NZ_CP086200.1 Protein Homology CDS 1888391 1889214 . - 0 ID=cds-LLC55_RS09020;Parent=gene-LLC55_RS09020;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508524.1;locus_tag=LLC55_RS09020;partial=true;product=AsmA family protein;pseudo=true;start_range=.,1888391;transl_table=11 NZ_CP086200.1 RefSeq gene 1889221 1889343 . - . ID=gene-LLC55_RS09025;Name=LLC55_RS09025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09025;old_locus_tag=LLC55_09025 NZ_CP086200.1 GeneMarkS-2+ CDS 1889221 1889343 . - 0 ID=cds-WP_012445281.1;Parent=gene-LLC55_RS09025;Dbxref=Genbank:WP_012445281.1;Name=WP_012445281.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS09025;product=hypothetical protein;protein_id=WP_012445281.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1889402 1890046 . - . ID=gene-LLC55_RS09030;Name=LLC55_RS09030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09030;old_locus_tag=LLC55_09030 NZ_CP086200.1 Protein Homology CDS 1889402 1890046 . - 0 ID=cds-WP_011258564.1;Parent=gene-LLC55_RS09030;Dbxref=Genbank:WP_011258564.1;Name=WP_011258564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301897.1;locus_tag=LLC55_RS09030;product=hemolysin III family protein;protein_id=WP_011258564.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1890122 1891726 . - . ID=gene-LLC55_RS09035;Name=LLC55_RS09035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09035;old_locus_tag=LLC55_09035 NZ_CP086200.1 Protein Homology CDS 1890122 1891726 . - 0 ID=cds-WP_011408227.1;Parent=gene-LLC55_RS09035;Dbxref=Genbank:WP_011408227.1;Name=WP_011408227.1;Ontology_term=GO:0006415,GO:0003924;gbkey=CDS;go_function=GTPase activity|0003924||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157859.1;locus_tag=LLC55_RS09035;product=peptide chain release factor 3;protein_id=WP_011408227.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1891859 1892758 . - . ID=gene-LLC55_RS09040;Name=LLC55_RS09040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09040;old_locus_tag=LLC55_09040 NZ_CP086200.1 Protein Homology CDS 1891859 1892758 . - 0 ID=cds-WP_042464717.1;Parent=gene-LLC55_RS09040;Dbxref=Genbank:WP_042464717.1;Name=WP_042464717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348199.1;locus_tag=LLC55_RS09040;product=M23 family metallopeptidase;protein_id=WP_042464717.1;transl_table=11 NZ_CP086200.1 cmsearch riboswitch 1892887 1893006 . + . ID=id-NZ_CP086200.1:1892887..1893006;Dbxref=RFAM:RF00162;Note=SAM riboswitch class I;bound_moiety=S-adenosylmethionine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP086200.1 RefSeq gene 1893077 1894108 . + . ID=gene-LLC55_RS09045;Name=LLC55_RS09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09045;old_locus_tag=LLC55_09045 NZ_CP086200.1 Protein Homology CDS 1893077 1894108 . + 0 ID=cds-WP_044756927.1;Parent=gene-LLC55_RS09045;Dbxref=Genbank:WP_044756927.1;Name=WP_044756927.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348198.1;locus_tag=LLC55_RS09045;product=homoserine O-succinyltransferase;protein_id=WP_044756927.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1894105 1895322 . + . ID=gene-LLC55_RS09050;Name=LLC55_RS09050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09050;old_locus_tag=LLC55_09050 NZ_CP086200.1 Protein Homology CDS 1894105 1895322 . + 0 ID=cds-WP_011408230.1;Parent=gene-LLC55_RS09050;Dbxref=Genbank:WP_011408230.1;Name=WP_011408230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157856.1;locus_tag=LLC55_RS09050;product=O-succinylhomoserine (thiol)-lyase;protein_id=WP_011408230.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1895319 1896414 . + . ID=gene-LLC55_RS09055;Name=LLC55_RS09055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09055;old_locus_tag=LLC55_09055;pseudo=true NZ_CP086200.1 Protein Homology CDS 1895319 1896414 . + 0 ID=cds-LLC55_RS09055;Parent=gene-LLC55_RS09055;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967946.1;locus_tag=LLC55_RS09055;product=homoserine dehydrogenase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1897090 1898472 . - . ID=gene-LLC55_RS09060;Name=LLC55_RS09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09060;old_locus_tag=LLC55_09060 NZ_CP086200.1 Protein Homology CDS 1897090 1898472 . - 0 ID=cds-WP_011258570.1;Parent=gene-LLC55_RS09060;Dbxref=Genbank:WP_011258570.1;Name=WP_011258570.1;Ontology_term=GO:0009063,GO:0003941,GO:0051539;gbkey=CDS;go_function=L-serine ammonia-lyase activity|0003941||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161485.1;locus_tag=LLC55_RS09060;product=L-serine ammonia-lyase;protein_id=WP_011258570.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1898560 1898793 . + . ID=gene-LLC55_RS09065;Name=LLC55_RS09065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09065;old_locus_tag=LLC55_09065 NZ_CP086200.1 Protein Homology CDS 1898560 1898793 . + 0 ID=cds-WP_011408231.1;Parent=gene-LLC55_RS09065;Dbxref=Genbank:WP_011408231.1;Name=WP_011408231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408231.1;locus_tag=LLC55_RS09065;product=glutaredoxin family protein;protein_id=WP_011408231.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1898879 1899151 . - . ID=gene-LLC55_RS09070;Name=LLC55_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09070;old_locus_tag=LLC55_09070 NZ_CP086200.1 Protein Homology CDS 1898879 1899151 . - 0 ID=cds-WP_228329744.1;Parent=gene-LLC55_RS09070;Dbxref=Genbank:WP_228329744.1;Name=WP_228329744.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017691.2;locus_tag=LLC55_RS09070;product=excalibur calcium-binding domain-containing protein;protein_id=WP_228329744.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1899593 1900162 . - . ID=gene-LLC55_RS09075;Name=LLC55_RS09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09075;old_locus_tag=LLC55_09075 NZ_CP086200.1 Protein Homology CDS 1899593 1900162 . - 0 ID=cds-WP_011258573.1;Parent=gene-LLC55_RS09075;Dbxref=Genbank:WP_011258573.1;Name=WP_011258573.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504047.1;locus_tag=LLC55_RS09075;product=YceI family protein;protein_id=WP_011258573.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1900172 1900735 . - . ID=gene-LLC55_RS09080;Name=LLC55_RS09080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09080;old_locus_tag=LLC55_09080 NZ_CP086200.1 Protein Homology CDS 1900172 1900735 . - 0 ID=cds-WP_011258574.1;Parent=gene-LLC55_RS09080;Dbxref=Genbank:WP_011258574.1;Name=WP_011258574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157851.1;locus_tag=LLC55_RS09080;product=cytochrome b;protein_id=WP_011258574.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1900732 1901394 . - . ID=gene-LLC55_RS09085;Name=LLC55_RS09085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09085;old_locus_tag=LLC55_09085 NZ_CP086200.1 Protein Homology CDS 1900732 1901394 . - 0 ID=cds-WP_011258575.1;Parent=gene-LLC55_RS09085;Dbxref=Genbank:WP_011258575.1;Name=WP_011258575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967939.1;locus_tag=LLC55_RS09085;product=YceI family protein;protein_id=WP_011258575.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1901491 1905066 . + . ID=gene-LLC55_RS09090;Name=LLC55_RS09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09090;old_locus_tag=LLC55_09090 NZ_CP086200.1 Protein Homology CDS 1901491 1905066 . + 0 ID=cds-WP_011408232.1;Parent=gene-LLC55_RS09090;Dbxref=Genbank:WP_011408232.1;Name=WP_011408232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167533.1;locus_tag=LLC55_RS09090;product=hybrid sensor histidine kinase/response regulator;protein_id=WP_011408232.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1905362 1908919 . + . ID=gene-LLC55_RS09095;Name=LLC55_RS09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09095;old_locus_tag=LLC55_09095 NZ_CP086200.1 Protein Homology CDS 1905362 1908919 . + 0 ID=cds-WP_042464720.1;Parent=gene-LLC55_RS09095;Dbxref=Genbank:WP_042464720.1;Name=WP_042464720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445273.1;locus_tag=LLC55_RS09095;product=ATP-binding protein;protein_id=WP_042464720.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1908985 1912566 . + . ID=gene-LLC55_RS09100;Name=LLC55_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09100;old_locus_tag=LLC55_09100 NZ_CP086200.1 Protein Homology CDS 1908985 1912566 . + 0 ID=cds-WP_103057214.1;Parent=gene-LLC55_RS09100;Dbxref=Genbank:WP_103057214.1;Name=WP_103057214.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437751.1;locus_tag=LLC55_RS09100;product=ATP-binding protein;protein_id=WP_103057214.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1912591 1912791 . - . ID=gene-LLC55_RS09105;Name=LLC55_RS09105;end_range=1912791,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09105;old_locus_tag=LLC55_09105;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1912591 1912791 . - 0 ID=cds-LLC55_RS09105;Parent=gene-LLC55_RS09105;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1912791,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157844.1;locus_tag=LLC55_RS09105;partial=true;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1912882 1913485 . + . ID=gene-LLC55_RS09110;Name=LLC55_RS09110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09110;old_locus_tag=LLC55_09110;pseudo=true NZ_CP086200.1 Protein Homology CDS 1912882 1913485 . + 0 ID=cds-LLC55_RS09110;Parent=gene-LLC55_RS09110;Note=frameshifted;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611849.1;locus_tag=LLC55_RS09110;product=integrase core domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1913533 1913909 . - . ID=gene-LLC55_RS09115;Name=LLC55_RS09115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09115;old_locus_tag=LLC55_09115;partial=true;pseudo=true;start_range=.,1913533 NZ_CP086200.1 Protein Homology CDS 1913533 1913909 . - 0 ID=cds-LLC55_RS09115;Parent=gene-LLC55_RS09115;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=LLC55_RS09115;partial=true;product=transposase;pseudo=true;start_range=.,1913533;transl_table=11 NZ_CP086200.1 RefSeq gene 1914097 1916028 . + . ID=gene-LLC55_RS09120;Name=LLC55_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09120;old_locus_tag=LLC55_09120 NZ_CP086200.1 Protein Homology CDS 1914097 1916028 . + 0 ID=cds-WP_011258585.1;Parent=gene-LLC55_RS09120;Dbxref=Genbank:WP_011258585.1;Name=WP_011258585.1;Ontology_term=GO:0005975,GO:0004560;gbkey=CDS;go_function=alpha-L-fucosidase activity|0004560||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449168.1;locus_tag=LLC55_RS09120;product=alpha-L-fucosidase;protein_id=WP_011258585.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1916195 1916548 . + . ID=gene-LLC55_RS09125;Name=LLC55_RS09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09125;old_locus_tag=LLC55_09125 NZ_CP086200.1 Protein Homology CDS 1916195 1916548 . + 0 ID=cds-WP_011408237.1;Parent=gene-LLC55_RS09125;Dbxref=Genbank:WP_011408237.1;Name=WP_011408237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155583.1;locus_tag=LLC55_RS09125;product=hypothetical protein;protein_id=WP_011408237.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1916787 1917991 . - . ID=gene-LLC55_RS23360;Name=LLC55_RS23360;end_range=1917991,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23360;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1916787 1917991 . - 0 ID=cds-LLC55_RS23360;Parent=gene-LLC55_RS23360;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1917991,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171532.1;locus_tag=LLC55_RS23360;partial=true;product=DUF4982 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1917986 1918375 . - . ID=gene-LLC55_RS23365;Name=LLC55_RS23365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23365;partial=true;pseudo=true;start_range=.,1917986 NZ_CP086200.1 Protein Homology CDS 1917986 1918375 . - 0 ID=cds-LLC55_RS23365;Parent=gene-LLC55_RS23365;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0015926;gbkey=CDS;go_function=glucosidase activity|0015926||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050835.1;locus_tag=LLC55_RS23365;partial=true;product=glycosyl hydrolase 53 family protein;pseudo=true;start_range=.,1917986;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1918610 1920071 . - . ID=gene-LLC55_RS09140;Name=LLC55_RS09140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09140;old_locus_tag=LLC55_09140;pseudo=true NZ_CP086200.1 Protein Homology CDS 1918610 1920071 . - 0 ID=cds-LLC55_RS09140;Parent=gene-LLC55_RS09140;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488248.1;locus_tag=LLC55_RS09140;product=TonB-dependent receptor;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1920408 1921793 . - . ID=gene-LLC55_RS09145;Name=LLC55_RS09145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09145;old_locus_tag=LLC55_09145 NZ_CP086200.1 Protein Homology CDS 1920408 1921793 . - 0 ID=cds-WP_011408242.1;Parent=gene-LLC55_RS09145;Dbxref=Genbank:WP_011408242.1;Name=WP_011408242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931112.1;locus_tag=LLC55_RS09145;product=short-chain fatty acyl-CoA regulator family protein;protein_id=WP_011408242.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1921932 1923437 . + . ID=gene-LLC55_RS09150;Name=LLC55_RS09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09150;old_locus_tag=LLC55_09150 NZ_CP086200.1 Protein Homology CDS 1921932 1923437 . + 0 ID=cds-WP_011408243.1;Parent=gene-LLC55_RS09150;Dbxref=Genbank:WP_011408243.1;Name=WP_011408243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155588.1;locus_tag=LLC55_RS09150;product=CoA-acylating methylmalonate-semialdehyde dehydrogenase;protein_id=WP_011408243.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1923448 1924629 . + . ID=gene-LLC55_RS09155;Name=LLC55_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09155;old_locus_tag=LLC55_09155 NZ_CP086200.1 Protein Homology CDS 1923448 1924629 . + 0 ID=cds-WP_011408244.1;Parent=gene-LLC55_RS09155;Dbxref=Genbank:WP_011408244.1;Name=WP_011408244.1;Ontology_term=GO:0016627;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303549.1;locus_tag=LLC55_RS09155;product=acyl-CoA dehydrogenase family protein;protein_id=WP_011408244.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1924626 1925423 . + . ID=gene-LLC55_RS09160;Name=LLC55_RS09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09160;old_locus_tag=LLC55_09160 NZ_CP086200.1 Protein Homology CDS 1924626 1925423 . + 0 ID=cds-WP_011258591.1;Parent=gene-LLC55_RS09160;Dbxref=Genbank:WP_011258591.1;Name=WP_011258591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445261.1;locus_tag=LLC55_RS09160;product=enoyl-CoA hydratase;protein_id=WP_011258591.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1925423 1926595 . + . ID=gene-LLC55_RS09165;Name=LLC55_RS09165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09165;old_locus_tag=LLC55_09165 NZ_CP086200.1 Protein Homology CDS 1925423 1926595 . + 0 ID=cds-WP_011408245.1;Parent=gene-LLC55_RS09165;Dbxref=Genbank:WP_011408245.1;Name=WP_011408245.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155591.1;locus_tag=LLC55_RS09165;product=enoyl-CoA hydratase/isomerase family protein;protein_id=WP_011408245.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1926755 1927657 . + . ID=gene-LLC55_RS09170;Name=mmsB;gbkey=Gene;gene=mmsB;gene_biotype=protein_coding;locus_tag=LLC55_RS09170;old_locus_tag=LLC55_09170 NZ_CP086200.1 Protein Homology CDS 1926755 1927657 . + 0 ID=cds-WP_027703337.1;Parent=gene-LLC55_RS09170;Dbxref=Genbank:WP_027703337.1;Name=WP_027703337.1;Ontology_term=GO:0006574,GO:0008442;gbkey=CDS;gene=mmsB;go_function=3-hydroxyisobutyrate dehydrogenase activity|0008442||IEA;go_process=valine catabolic process|0006574||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118158.1;locus_tag=LLC55_RS09170;product=3-hydroxyisobutyrate dehydrogenase;protein_id=WP_027703337.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1927896 1928861 . + . ID=gene-LLC55_RS09175;Name=LLC55_RS09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09175;old_locus_tag=LLC55_09175 NZ_CP086200.1 Protein Homology CDS 1927896 1928861 . + 0 ID=cds-WP_011408247.1;Parent=gene-LLC55_RS09175;Dbxref=Genbank:WP_011408247.1;Name=WP_011408247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488234.1;locus_tag=LLC55_RS09175;product=cation diffusion facilitator family transporter;protein_id=WP_011408247.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1929078 1931159 . - . ID=gene-LLC55_RS09180;Name=LLC55_RS09180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09180;old_locus_tag=LLC55_09180 NZ_CP086200.1 Protein Homology CDS 1929078 1931159 . - 0 ID=cds-WP_011258595.1;Parent=gene-LLC55_RS09180;Dbxref=Genbank:WP_011258595.1;Name=WP_011258595.1;Ontology_term=GO:0006631,GO:0070403;gbkey=CDS;go_function=NAD+ binding|0070403||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159518.1;locus_tag=LLC55_RS09180;product=3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein;protein_id=WP_011258595.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1931396 1932016 . + . ID=gene-LLC55_RS09185;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=LLC55_RS09185;old_locus_tag=LLC55_09185 NZ_CP086200.1 Protein Homology CDS 1931396 1932016 . + 0 ID=cds-WP_041182077.1;Parent=gene-LLC55_RS09185;Dbxref=Genbank:WP_041182077.1;Name=WP_041182077.1;Ontology_term=GO:0006352,GO:0006979,GO:0016987,GO:0005737;gbkey=CDS;gene=rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962205.1;locus_tag=LLC55_RS09185;product=RNA polymerase sigma factor RpoE;protein_id=WP_041182077.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1932013 1932912 . + . ID=gene-LLC55_RS09190;Name=LLC55_RS09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09190;old_locus_tag=LLC55_09190 NZ_CP086200.1 Protein Homology CDS 1932013 1932912 . + 0 ID=cds-WP_011258597.1;Parent=gene-LLC55_RS09190;Dbxref=Genbank:WP_011258597.1;Name=WP_011258597.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159519.1;locus_tag=LLC55_RS09190;product=sigma-E factor negative regulatory protein;protein_id=WP_011258597.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1933022 1934608 . + . ID=gene-LLC55_RS09195;Name=LLC55_RS09195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09195;old_locus_tag=LLC55_09195 NZ_CP086200.1 Protein Homology CDS 1933022 1934608 . + 0 ID=cds-WP_011408249.1;Parent=gene-LLC55_RS09195;Dbxref=Genbank:WP_011408249.1;Name=WP_011408249.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160027.1;locus_tag=LLC55_RS09195;product=DegQ family serine endoprotease;protein_id=WP_011408249.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1934789 1936579 . + . ID=gene-LLC55_RS09200;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=LLC55_RS09200;old_locus_tag=LLC55_09200 NZ_CP086200.1 Protein Homology CDS 1934789 1936579 . + 0 ID=cds-WP_041182078.1;Parent=gene-LLC55_RS09200;Dbxref=Genbank:WP_041182078.1;Name=WP_041182078.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300425.1;locus_tag=LLC55_RS09200;product=translation elongation factor 4;protein_id=WP_041182078.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1936686 1937486 . + . ID=gene-LLC55_RS09205;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=LLC55_RS09205;old_locus_tag=LLC55_09205 NZ_CP086200.1 Protein Homology CDS 1936686 1937486 . + 0 ID=cds-WP_011258600.1;Parent=gene-LLC55_RS09205;Dbxref=Genbank:WP_011258600.1;Name=WP_011258600.1;Ontology_term=GO:0006465,GO:0009306,GO:0004252;gbkey=CDS;gene=lepB;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155604.1;locus_tag=LLC55_RS09205;product=signal peptidase I;protein_id=WP_011258600.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1937517 1937894 . + . ID=gene-LLC55_RS09210;Name=LLC55_RS09210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09210;old_locus_tag=LLC55_09210 NZ_CP086200.1 Protein Homology CDS 1937517 1937894 . + 0 ID=cds-WP_011258601.1;Parent=gene-LLC55_RS09210;Dbxref=Genbank:WP_011258601.1;Name=WP_011258601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050845.1;locus_tag=LLC55_RS09210;product=DUF4845 domain-containing protein;protein_id=WP_011258601.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1937884 1938564 . + . ID=gene-LLC55_RS09215;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=LLC55_RS09215;old_locus_tag=LLC55_09215 NZ_CP086200.1 Protein Homology CDS 1937884 1938564 . + 0 ID=cds-WP_011258602.1;Parent=gene-LLC55_RS09215;Dbxref=Genbank:WP_011258602.1;Name=WP_011258602.1;Ontology_term=GO:0006396,GO:0004525;gbkey=CDS;gene=rnc;go_function=ribonuclease III activity|0004525||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445253.1;locus_tag=LLC55_RS09215;product=ribonuclease III;protein_id=WP_011258602.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1938561 1939460 . + . ID=gene-LLC55_RS09220;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=LLC55_RS09220;old_locus_tag=LLC55_09220 NZ_CP086200.1 Protein Homology CDS 1938561 1939460 . + 0 ID=cds-WP_011258603.1;Parent=gene-LLC55_RS09220;Dbxref=Genbank:WP_011258603.1;Name=WP_011258603.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921522.1;locus_tag=LLC55_RS09220;product=GTPase Era;protein_id=WP_011258603.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1939684 1940406 . + . ID=gene-LLC55_RS09225;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=LLC55_RS09225;old_locus_tag=LLC55_09225 NZ_CP086200.1 Protein Homology CDS 1939684 1940406 . + 0 ID=cds-WP_011258604.1;Parent=gene-LLC55_RS09225;Dbxref=Genbank:WP_011258604.1;Name=WP_011258604.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300430.1;locus_tag=LLC55_RS09225;product=DNA repair protein RecO;protein_id=WP_011258604.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1940555 1941277 . - . ID=gene-LLC55_RS09230;Name=LLC55_RS09230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09230;old_locus_tag=LLC55_09230 NZ_CP086200.1 Protein Homology CDS 1940555 1941277 . - 0 ID=cds-WP_011408250.1;Parent=gene-LLC55_RS09230;Dbxref=Genbank:WP_011408250.1;Name=WP_011408250.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258605.1;locus_tag=LLC55_RS09230;product=response regulator;protein_id=WP_011408250.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1941436 1942770 . + . ID=gene-LLC55_RS09235;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=protein_coding;locus_tag=LLC55_RS09235;old_locus_tag=LLC55_09235 NZ_CP086200.1 Protein Homology CDS 1941436 1942770 . + 0 ID=cds-WP_011408251.1;Parent=gene-LLC55_RS09235;Dbxref=Genbank:WP_011408251.1;Name=WP_011408251.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmD;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380519.1;locus_tag=LLC55_RS09235;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_011408251.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1942945 1943442 . + . ID=gene-LLC55_RS09240;Name=LLC55_RS09240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09240;old_locus_tag=LLC55_09240 NZ_CP086200.1 Protein Homology CDS 1942945 1943442 . + 0 ID=cds-WP_011258607.1;Parent=gene-LLC55_RS09240;Dbxref=Genbank:WP_011258607.1;Name=WP_011258607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303536.1;locus_tag=LLC55_RS09240;product=CYTH domain-containing protein;protein_id=WP_011258607.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1943538 1944773 . - . ID=gene-LLC55_RS09245;Name=LLC55_RS09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09245;old_locus_tag=LLC55_09245 NZ_CP086200.1 Protein Homology CDS 1943538 1944773 . - 0 ID=cds-WP_011257310.1-2;Parent=gene-LLC55_RS09245;Dbxref=Genbank:WP_011257310.1;Name=WP_011257310.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS09245;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011257310.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1945002 1946378 . + . ID=gene-LLC55_RS09250;Name=LLC55_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09250;old_locus_tag=LLC55_09250 NZ_CP086200.1 Protein Homology CDS 1945002 1946378 . + 0 ID=cds-WP_011408252.1;Parent=gene-LLC55_RS09250;Dbxref=Genbank:WP_011408252.1;Name=WP_011408252.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS09250;product=IS5-like element ISXo4 family transposase;protein_id=WP_011408252.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1946498 1947181 . + . ID=gene-LLC55_RS09255;Name=LLC55_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09255;old_locus_tag=LLC55_09255 NZ_CP086200.1 Protein Homology CDS 1946498 1947181 . + 0 ID=cds-WP_075242195.1;Parent=gene-LLC55_RS09255;Dbxref=Genbank:WP_075242195.1;Name=WP_075242195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155610.1;locus_tag=LLC55_RS09255;product=DsbA family oxidoreductase;protein_id=WP_075242195.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1947198 1948232 . + . ID=gene-LLC55_RS09260;Name=LLC55_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09260;old_locus_tag=LLC55_09260 NZ_CP086200.1 Protein Homology CDS 1947198 1948232 . + 0 ID=cds-WP_011408254.1;Parent=gene-LLC55_RS09260;Dbxref=Genbank:WP_011408254.1;Name=WP_011408254.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155611.1;locus_tag=LLC55_RS09260;product=FAD-dependent oxidoreductase;protein_id=WP_011408254.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1948413 1949990 . + . ID=gene-LLC55_RS09265;Name=LLC55_RS09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09265;old_locus_tag=LLC55_09265 NZ_CP086200.1 Protein Homology CDS 1948413 1949990 . + 0 ID=cds-WP_011408255.1;Parent=gene-LLC55_RS09265;Dbxref=Genbank:WP_011408255.1;Name=WP_011408255.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174064.1;locus_tag=LLC55_RS09265;product=cryptochrome/photolyase family protein;protein_id=WP_011408255.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1950108 1951112 . + . ID=gene-LLC55_RS09270;Name=nagZ;gbkey=Gene;gene=nagZ;gene_biotype=protein_coding;locus_tag=LLC55_RS09270;old_locus_tag=LLC55_09270 NZ_CP086200.1 Protein Homology CDS 1950108 1951112 . + 0 ID=cds-WP_011408256.1;Parent=gene-LLC55_RS09270;Dbxref=Genbank:WP_011408256.1;Name=WP_011408256.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=nagZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303533.1;locus_tag=LLC55_RS09270;product=beta-N-acetylhexosaminidase;protein_id=WP_011408256.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1951112 1951666 . + . ID=gene-LLC55_RS09275;Name=LLC55_RS09275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09275;old_locus_tag=LLC55_09275 NZ_CP086200.1 Protein Homology CDS 1951112 1951666 . + 0 ID=cds-WP_011408257.1;Parent=gene-LLC55_RS09275;Dbxref=Genbank:WP_011408257.1;Name=WP_011408257.1;Ontology_term=GO:0009116;gbkey=CDS;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449878.1;locus_tag=LLC55_RS09275;product=hypoxanthine-guanine phosphoribosyltransferase;protein_id=WP_011408257.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1951752 1952504 . + . ID=gene-LLC55_RS09280;Name=LLC55_RS09280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09280;old_locus_tag=LLC55_09280 NZ_CP086200.1 Protein Homology CDS 1951752 1952504 . + 0 ID=cds-WP_011408258.1;Parent=gene-LLC55_RS09280;Dbxref=Genbank:WP_011408258.1;Name=WP_011408258.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408258.1;locus_tag=LLC55_RS09280;product=S-methyl-5'-thioinosine phosphorylase;protein_id=WP_011408258.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1952591 1952797 . + . ID=gene-LLC55_RS09285;Name=LLC55_RS09285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09285;old_locus_tag=LLC55_09285 NZ_CP086200.1 Protein Homology CDS 1952591 1952797 . + 0 ID=cds-WP_003488188.1;Parent=gene-LLC55_RS09285;Dbxref=Genbank:WP_003488188.1;Name=WP_003488188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488188.1;locus_tag=LLC55_RS09285;product=cold-shock protein;protein_id=WP_003488188.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1952892 1953122 . + . ID=gene-LLC55_RS09290;Name=LLC55_RS09290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09290;old_locus_tag=LLC55_09290 NZ_CP086200.1 Protein Homology CDS 1952892 1953122 . + 0 ID=cds-WP_011408259.1;Parent=gene-LLC55_RS09290;Dbxref=Genbank:WP_011408259.1;Name=WP_011408259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504011.1;locus_tag=LLC55_RS09290;product=oxidoreductase;protein_id=WP_011408259.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1953330 1953707 . + . ID=gene-LLC55_RS09295;Name=LLC55_RS09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09295;old_locus_tag=LLC55_09295 NZ_CP086200.1 GeneMarkS-2+ CDS 1953330 1953707 . + 0 ID=cds-WP_011408260.1;Parent=gene-LLC55_RS09295;Dbxref=Genbank:WP_011408260.1;Name=WP_011408260.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS09295;product=hypothetical protein;protein_id=WP_011408260.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1953711 1954133 . + . ID=gene-LLC55_RS09300;Name=LLC55_RS09300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09300;old_locus_tag=LLC55_09300;partial=true;pseudo=true;start_range=.,1953711 NZ_CP086200.1 Protein Homology CDS 1953711 1954133 . + 0 ID=cds-LLC55_RS09300;Parent=gene-LLC55_RS09300;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159522.1;locus_tag=LLC55_RS09300;partial=true;product=FAD-dependent monooxygenase;pseudo=true;start_range=.,1953711;transl_table=11 NZ_CP086200.1 RefSeq gene 1954193 1954266 . + . ID=gene-LLC55_RS09305;Name=LLC55_RS09305;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS09305;old_locus_tag=LLC55_09305 NZ_CP086200.1 cmsearch ncRNA 1954193 1954266 . + . ID=rna-LLC55_RS09305;Parent=gene-LLC55_RS09305;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09305;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1954193 1954266 . + . ID=exon-LLC55_RS09305-1;Parent=rna-LLC55_RS09305;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09305;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1954308 1954952 . - . ID=gene-LLC55_RS09310;Name=pdeM;gbkey=Gene;gene=pdeM;gene_biotype=protein_coding;locus_tag=LLC55_RS09310;old_locus_tag=LLC55_09310 NZ_CP086200.1 Protein Homology CDS 1954308 1954952 . - 0 ID=cds-WP_014504008.1;Parent=gene-LLC55_RS09310;Dbxref=Genbank:WP_014504008.1;Name=WP_014504008.1;Ontology_term=GO:0016787;gbkey=CDS;gene=pdeM;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924783.1;locus_tag=LLC55_RS09310;product=ligase-associated DNA damage response endonuclease PdeM;protein_id=WP_014504008.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1954942 1957443 . - . ID=gene-LLC55_RS09315;Name=LLC55_RS09315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09315;old_locus_tag=LLC55_09315 NZ_CP086200.1 Protein Homology CDS 1954942 1957443 . - 0 ID=cds-WP_011408263.1;Parent=gene-LLC55_RS09315;Dbxref=Genbank:WP_011408263.1;Name=WP_011408263.1;Ontology_term=GO:0003676,GO:0016818;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155617.1;locus_tag=LLC55_RS09315;product=ligase-associated DNA damage response DEXH box helicase;protein_id=WP_011408263.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1957440 1959044 . - . ID=gene-LLC55_RS09320;Name=LLC55_RS09320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09320;old_locus_tag=LLC55_09320 NZ_CP086200.1 Protein Homology CDS 1957440 1959044 . - 0 ID=cds-WP_011408264.1;Parent=gene-LLC55_RS09320;Dbxref=Genbank:WP_011408264.1;Name=WP_011408264.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0003910,GO:0005524;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA ligase (ATP) activity|0003910||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300442.1;locus_tag=LLC55_RS09320;product=ATP-dependent DNA ligase;protein_id=WP_011408264.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1959041 1959274 . - . ID=gene-LLC55_RS09325;Name=LLC55_RS09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09325;old_locus_tag=LLC55_09325 NZ_CP086200.1 Protein Homology CDS 1959041 1959274 . - 0 ID=cds-WP_011258619.1;Parent=gene-LLC55_RS09325;Dbxref=Genbank:WP_011258619.1;Name=WP_011258619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366000.1;locus_tag=LLC55_RS09325;product=hypothetical protein;protein_id=WP_011258619.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1959271 1960293 . - . ID=gene-LLC55_RS09330;Name=LLC55_RS09330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09330;old_locus_tag=LLC55_09330 NZ_CP086200.1 Protein Homology CDS 1959271 1960293 . - 0 ID=cds-WP_011408265.1;Parent=gene-LLC55_RS09330;Dbxref=Genbank:WP_011408265.1;Name=WP_011408265.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089699.1;locus_tag=LLC55_RS09330;product=ligase-associated DNA damage response exonuclease;protein_id=WP_011408265.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1960630 1960995 . - . ID=gene-LLC55_RS09335;Name=LLC55_RS09335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09335;old_locus_tag=LLC55_09335 NZ_CP086200.1 Protein Homology CDS 1960630 1960995 . - 0 ID=cds-WP_011258621.1;Parent=gene-LLC55_RS09335;Dbxref=Genbank:WP_011258621.1;Name=WP_011258621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302272.1;locus_tag=LLC55_RS09335;product=hypothetical protein;protein_id=WP_011258621.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1960992 1961582 . - . ID=gene-LLC55_RS09340;Name=LLC55_RS09340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09340;old_locus_tag=LLC55_09340 NZ_CP086200.1 Protein Homology CDS 1960992 1961582 . - 0 ID=cds-WP_011408267.1;Parent=gene-LLC55_RS09340;Dbxref=Genbank:WP_011408267.1;Name=WP_011408267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504002.1;locus_tag=LLC55_RS09340;product=polymer-forming cytoskeletal protein;protein_id=WP_011408267.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1961680 1963389 . - . ID=gene-LLC55_RS09345;Name=LLC55_RS09345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09345;old_locus_tag=LLC55_09345 NZ_CP086200.1 Protein Homology CDS 1961680 1963389 . - 0 ID=cds-WP_011408268.1;Parent=gene-LLC55_RS09345;Dbxref=Genbank:WP_011408268.1;Name=WP_011408268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408268.1;locus_tag=LLC55_RS09345;product=GGDEF domain-containing protein;protein_id=WP_011408268.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1963498 1963824 . - . ID=gene-LLC55_RS09350;Name=LLC55_RS09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09350;old_locus_tag=LLC55_09350 NZ_CP086200.1 Protein Homology CDS 1963498 1963824 . - 0 ID=cds-WP_011258624.1;Parent=gene-LLC55_RS09350;Dbxref=Genbank:WP_011258624.1;Name=WP_011258624.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921547.1;locus_tag=LLC55_RS09350;product=hypothetical protein;protein_id=WP_011258624.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1964054 1964398 . - . ID=gene-LLC55_RS09355;Name=LLC55_RS09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09355;old_locus_tag=LLC55_09355 NZ_CP086200.1 Protein Homology CDS 1964054 1964398 . - 0 ID=cds-WP_011408269.1;Parent=gene-LLC55_RS09355;Dbxref=Genbank:WP_011408269.1;Name=WP_011408269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269920.1;locus_tag=LLC55_RS09355;product=hypothetical protein;protein_id=WP_011408269.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1964521 1965696 . - . ID=gene-LLC55_RS09360;Name=LLC55_RS09360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09360;old_locus_tag=LLC55_09360 NZ_CP086200.1 Protein Homology CDS 1964521 1965696 . - 0 ID=cds-WP_011408270.1;Parent=gene-LLC55_RS09360;Dbxref=Genbank:WP_011408270.1;Name=WP_011408270.1;Ontology_term=GO:0006631,GO:0003985;gbkey=CDS;go_function=acetyl-CoA C-acetyltransferase activity|0003985||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911622.1;locus_tag=LLC55_RS09360;product=acetyl-CoA C-acyltransferase;protein_id=WP_011408270.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1965852 1968680 . + . ID=gene-LLC55_RS09365;Name=LLC55_RS09365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09365;old_locus_tag=LLC55_09365 NZ_CP086200.1 Protein Homology CDS 1965852 1968680 . + 0 ID=cds-WP_011258626.1;Parent=gene-LLC55_RS09365;Dbxref=Genbank:WP_011258626.1;Name=WP_011258626.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911624.1;locus_tag=LLC55_RS09365;product=autotransporter serine protease;protein_id=WP_011258626.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1968741 1969841 . - . ID=gene-LLC55_RS09370;Name=LLC55_RS09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09370;old_locus_tag=LLC55_09370 NZ_CP086200.1 Protein Homology CDS 1968741 1969841 . - 0 ID=cds-WP_011258627.1;Parent=gene-LLC55_RS09370;Dbxref=Genbank:WP_011258627.1;Name=WP_011258627.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155625.1;locus_tag=LLC55_RS09370;product=Glu/Leu/Phe/Val dehydrogenase;protein_id=WP_011258627.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1969999 1970070 . - . ID=gene-LLC55_RS09375;Name=LLC55_RS09375;end_range=1970070,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09375;old_locus_tag=LLC55_09375;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 1969999 1970070 . - 0 ID=cds-LLC55_RS09375;Parent=gene-LLC55_RS09375;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1970070,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116735.1;locus_tag=LLC55_RS09375;partial=true;product=2OG-Fe(II) oxygenase superfamily protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1970075 1970151 . - . ID=gene-LLC55_RS09380;Name=LLC55_RS09380;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS09380;old_locus_tag=LLC55_09380 NZ_CP086200.1 cmsearch ncRNA 1970075 1970151 . - . ID=rna-LLC55_RS09380;Parent=gene-LLC55_RS09380;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09380;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1970075 1970151 . - . ID=exon-LLC55_RS09380-1;Parent=rna-LLC55_RS09380;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09380;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 1970310 1970918 . - . ID=gene-LLC55_RS09385;Name=LLC55_RS09385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09385;old_locus_tag=LLC55_09385;pseudo=true NZ_CP086200.1 Protein Homology CDS 1970310 1970918 . - 0 ID=cds-LLC55_RS09385;Parent=gene-LLC55_RS09385;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967352.1;locus_tag=LLC55_RS09385;product=DUF45 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1971239 1971412 . + . ID=gene-LLC55_RS09390;Name=LLC55_RS09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09390;old_locus_tag=LLC55_09390 NZ_CP086200.1 Protein Homology CDS 1971239 1971412 . + 0 ID=cds-WP_011258629.1;Parent=gene-LLC55_RS09390;Dbxref=Genbank:WP_011258629.1;Name=WP_011258629.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258629.1;locus_tag=LLC55_RS09390;product=DUF1328 domain-containing protein;protein_id=WP_011258629.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1971573 1971827 . - . ID=gene-LLC55_RS09395;Name=LLC55_RS09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09395;old_locus_tag=LLC55_09395 NZ_CP086200.1 Protein Homology CDS 1971573 1971827 . - 0 ID=cds-WP_011258630.1;Parent=gene-LLC55_RS09395;Dbxref=Genbank:WP_011258630.1;Name=WP_011258630.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990927.1;locus_tag=LLC55_RS09395;product=DUF2789 domain-containing protein;protein_id=WP_011258630.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1972002 1972268 . + . ID=gene-LLC55_RS09400;Name=LLC55_RS09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09400;old_locus_tag=LLC55_09400 NZ_CP086200.1 Protein Homology CDS 1972002 1972268 . + 0 ID=cds-WP_011258631.1;Parent=gene-LLC55_RS09400;Dbxref=Genbank:WP_011258631.1;Name=WP_011258631.1;Ontology_term=GO:0008270;gbkey=CDS;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452846.1;locus_tag=LLC55_RS09400;product=DksA/TraR family C4-type zinc finger protein;protein_id=WP_011258631.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1972459 1973025 . - . ID=gene-LLC55_RS09405;Name=LLC55_RS09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09405;old_locus_tag=LLC55_09405 NZ_CP086200.1 Protein Homology CDS 1972459 1973025 . - 0 ID=cds-WP_041182418.1;Parent=gene-LLC55_RS09405;Dbxref=Genbank:WP_041182418.1;Name=WP_041182418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967347.1;locus_tag=LLC55_RS09405;product=mechanosensitive ion channel family protein;protein_id=WP_041182418.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1973210 1974424 . + . ID=gene-LLC55_RS09410;Name=LLC55_RS09410;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09410;old_locus_tag=LLC55_09410;pseudo=true NZ_CP086200.1 Protein Homology CDS 1973210 1974424 . + 0 ID=cds-LLC55_RS09410;Parent=gene-LLC55_RS09410;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS09410;product=IS4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1974513 1975832 . + . ID=gene-LLC55_RS09415;Name=LLC55_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09415;old_locus_tag=LLC55_09415 NZ_CP086200.1 Protein Homology CDS 1974513 1975832 . + 0 ID=cds-WP_109181915.1;Parent=gene-LLC55_RS09415;Dbxref=Genbank:WP_109181915.1;Name=WP_109181915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS09415;product=IS701-like element ISXo15 family transposase;protein_id=WP_109181915.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1975972 1976048 . + . ID=gene-LLC55_RS09420;Name=LLC55_RS09420;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS09420;old_locus_tag=LLC55_09420 NZ_CP086200.1 cmsearch ncRNA 1975972 1976048 . + . ID=rna-LLC55_RS09420;Parent=gene-LLC55_RS09420;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09420;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1975972 1976048 . + . ID=exon-LLC55_RS09420-1;Parent=rna-LLC55_RS09420;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09420;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1976225 1976410 . - . ID=gene-LLC55_RS09425;Name=LLC55_RS09425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09425;old_locus_tag=LLC55_09425 NZ_CP086200.1 Protein Homology CDS 1976225 1976410 . - 0 ID=cds-WP_011258635.1;Parent=gene-LLC55_RS09425;Dbxref=Genbank:WP_011258635.1;Name=WP_011258635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155632.1;locus_tag=LLC55_RS09425;product=hypothetical protein;protein_id=WP_011258635.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1976600 1977976 . - . ID=gene-LLC55_RS09430;Name=LLC55_RS09430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09430;old_locus_tag=LLC55_09430 NZ_CP086200.1 Protein Homology CDS 1976600 1977976 . - 0 ID=cds-WP_012445232.1;Parent=gene-LLC55_RS09430;Dbxref=Genbank:WP_012445232.1;Name=WP_012445232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503984.1;locus_tag=LLC55_RS09430;product=Hsp70 family protein;protein_id=WP_012445232.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1978116 1978589 . - . ID=gene-LLC55_RS09435;Name=LLC55_RS09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09435;old_locus_tag=LLC55_09435 NZ_CP086200.1 Protein Homology CDS 1978116 1978589 . - 0 ID=cds-WP_011408277.1;Parent=gene-LLC55_RS09435;Dbxref=Genbank:WP_011408277.1;Name=WP_011408277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578221.1;locus_tag=LLC55_RS09435;product=peptidylprolyl isomerase;protein_id=WP_011408277.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1978765 1980013 . - . ID=gene-LLC55_RS09440;Name=LLC55_RS09440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09440;old_locus_tag=LLC55_09440;pseudo=true NZ_CP086200.1 Protein Homology CDS 1978765 1980013 . - 0 ID=cds-LLC55_RS09440;Parent=gene-LLC55_RS09440;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS09440;product=ISL3-like element ISXoo13 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1980261 1981310 . - . ID=gene-LLC55_RS09445;Name=LLC55_RS09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09445;old_locus_tag=LLC55_09445 NZ_CP086200.1 Protein Homology CDS 1980261 1981310 . - 0 ID=cds-WP_011408279.1;Parent=gene-LLC55_RS09445;Dbxref=Genbank:WP_011408279.1;Name=WP_011408279.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113013.1;locus_tag=LLC55_RS09445;product=cation diffusion facilitator family transporter;protein_id=WP_011408279.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1981425 1981760 . + . ID=gene-LLC55_RS09450;Name=LLC55_RS09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09450;old_locus_tag=LLC55_09450 NZ_CP086200.1 Protein Homology CDS 1981425 1981760 . + 0 ID=cds-WP_011408280.1;Parent=gene-LLC55_RS09450;Dbxref=Genbank:WP_011408280.1;Name=WP_011408280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489493.1;locus_tag=LLC55_RS09450;product=zinc ribbon domain-containing protein YjdM;protein_id=WP_011408280.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1982049 1982822 . - . ID=gene-LLC55_RS09455;Name=LLC55_RS09455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09455;old_locus_tag=LLC55_09455 NZ_CP086200.1 Protein Homology CDS 1982049 1982822 . - 0 ID=cds-WP_228329745.1;Parent=gene-LLC55_RS09455;Dbxref=Genbank:WP_228329745.1;Name=WP_228329745.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997089.1;locus_tag=LLC55_RS09455;product=hypothetical protein;protein_id=WP_228329745.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1983230 1984348 . - . ID=gene-LLC55_RS09460;Name=LLC55_RS09460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09460;old_locus_tag=LLC55_09460 NZ_CP086200.1 Protein Homology CDS 1983230 1984348 . - 0 ID=cds-WP_011408282.1;Parent=gene-LLC55_RS09460;Dbxref=Genbank:WP_011408282.1;Name=WP_011408282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155638.1;locus_tag=LLC55_RS09460;product=alkene reductase;protein_id=WP_011408282.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1984569 1985780 . + . ID=gene-LLC55_RS09465;Name=LLC55_RS09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09465;old_locus_tag=LLC55_09465 NZ_CP086200.1 Protein Homology CDS 1984569 1985780 . + 0 ID=cds-WP_011258642.1;Parent=gene-LLC55_RS09465;Dbxref=Genbank:WP_011258642.1;Name=WP_011258642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159530.1;locus_tag=LLC55_RS09465;product=MFS transporter;protein_id=WP_011258642.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1986247 1987461 . + . ID=gene-LLC55_RS09470;Name=LLC55_RS09470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09470;old_locus_tag=LLC55_09470;pseudo=true NZ_CP086200.1 Protein Homology CDS 1986247 1987461 . + 0 ID=cds-LLC55_RS09470;Parent=gene-LLC55_RS09470;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS09470;product=IS4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1987703 1988158 . + . ID=gene-LLC55_RS09475;Name=LLC55_RS09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09475;old_locus_tag=LLC55_09475 NZ_CP086200.1 Protein Homology CDS 1987703 1988158 . + 0 ID=cds-WP_011258643.1;Parent=gene-LLC55_RS09475;Dbxref=Genbank:WP_011258643.1;Name=WP_011258643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303138.1;locus_tag=LLC55_RS09475;product=PA2169 family four-helix-bundle protein;protein_id=WP_011258643.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1988432 1989034 . + . ID=gene-LLC55_RS09480;Name=thpR;gbkey=Gene;gene=thpR;gene_biotype=protein_coding;locus_tag=LLC55_RS09480;old_locus_tag=LLC55_09480 NZ_CP086200.1 Protein Homology CDS 1988432 1989034 . + 0 ID=cds-WP_011408284.1;Parent=gene-LLC55_RS09480;Dbxref=Genbank:WP_011408284.1;Name=WP_011408284.1;Ontology_term=GO:0008033,GO:0008664;gbkey=CDS;gene=thpR;go_function=2'-5'-RNA ligase activity|0008664||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408284.1;locus_tag=LLC55_RS09480;product=RNA 2'%2C3'-cyclic phosphodiesterase;protein_id=WP_011408284.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1989070 1989678 . + . ID=gene-LLC55_RS09485;Name=LLC55_RS09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09485;old_locus_tag=LLC55_09485 NZ_CP086200.1 Protein Homology CDS 1989070 1989678 . + 0 ID=cds-WP_011258645.1;Parent=gene-LLC55_RS09485;Dbxref=Genbank:WP_011258645.1;Name=WP_011258645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503972.1;locus_tag=LLC55_RS09485;product=hypothetical protein;protein_id=WP_011258645.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1989738 1989932 . + . ID=gene-LLC55_RS09490;Name=LLC55_RS09490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09490;old_locus_tag=LLC55_09490 NZ_CP086200.1 Protein Homology CDS 1989738 1989932 . + 0 ID=cds-WP_011258646.1;Parent=gene-LLC55_RS09490;Dbxref=Genbank:WP_011258646.1;Name=WP_011258646.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155644.1;locus_tag=LLC55_RS09490;product=hypothetical protein;protein_id=WP_011258646.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1990002 1991372 . + . ID=gene-LLC55_RS09495;Name=LLC55_RS09495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09495;old_locus_tag=LLC55_09495 NZ_CP086200.1 Protein Homology CDS 1990002 1991372 . + 0 ID=cds-WP_011408285.1;Parent=gene-LLC55_RS09495;Dbxref=Genbank:WP_011408285.1;Name=WP_011408285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258647.1;locus_tag=LLC55_RS09495;product=virulence factor family protein;protein_id=WP_011408285.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1991566 1991642 . + . ID=gene-LLC55_RS09500;Name=LLC55_RS09500;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS09500;old_locus_tag=LLC55_09500 NZ_CP086200.1 cmsearch ncRNA 1991566 1991642 . + . ID=rna-LLC55_RS09500;Parent=gene-LLC55_RS09500;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09500;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 1991566 1991642 . + . ID=exon-LLC55_RS09500-1;Parent=rna-LLC55_RS09500;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09500;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 1991657 1992419 . - . ID=gene-LLC55_RS09505;Name=LLC55_RS09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09505;old_locus_tag=LLC55_09505 NZ_CP086200.1 Protein Homology CDS 1992100 1992419 . - 0 ID=cds-WP_109181916.1;Parent=gene-LLC55_RS09505;Dbxref=Genbank:WP_109181916.1;Name=WP_109181916.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS09505;product=IS5 family transposase;protein_id=WP_109181916.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 1991657 1992101 . - 1 ID=cds-WP_109181916.1;Parent=gene-LLC55_RS09505;Dbxref=Genbank:WP_109181916.1;Name=WP_109181916.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS09505;product=IS5 family transposase;protein_id=WP_109181916.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1992811 1995375 . - . ID=gene-LLC55_RS09510;Name=mprF;gbkey=Gene;gene=mprF;gene_biotype=protein_coding;locus_tag=LLC55_RS09510;old_locus_tag=LLC55_09510 NZ_CP086200.1 Protein Homology CDS 1992811 1995375 . - 0 ID=cds-WP_011408287.1;Parent=gene-LLC55_RS09510;Dbxref=Genbank:WP_011408287.1;Name=WP_011408287.1;gbkey=CDS;gene=mprF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485461.1;locus_tag=LLC55_RS09510;product=bifunctional lysylphosphatidylglycerol flippase/synthetase MprF;protein_id=WP_011408287.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 1995444 1996345 . + . ID=gene-LLC55_RS09515;Name=LLC55_RS09515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09515;old_locus_tag=LLC55_09515;pseudo=true NZ_CP086200.1 Protein Homology CDS 1995444 1996345 . + 0 ID=cds-LLC55_RS09515;Parent=gene-LLC55_RS09515;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850265.1;locus_tag=LLC55_RS09515;product=DUF998 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 1996356 1996703 . + . ID=gene-LLC55_RS09520;Name=LLC55_RS09520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09520;old_locus_tag=LLC55_09520 NZ_CP086200.1 Protein Homology CDS 1996356 1996703 . + 0 ID=cds-WP_011408290.1;Parent=gene-LLC55_RS09520;Dbxref=Genbank:WP_011408290.1;Name=WP_011408290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578235.1;locus_tag=LLC55_RS09520;product=RidA family protein;protein_id=WP_011408290.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1996865 1997935 . - . ID=gene-LLC55_RS09525;Name=LLC55_RS09525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09525;old_locus_tag=LLC55_09525 NZ_CP086200.1 Protein Homology CDS 1996865 1997935 . - 0 ID=cds-WP_011408291.1;Parent=gene-LLC55_RS09525;Dbxref=Genbank:WP_011408291.1;Name=WP_011408291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924864.1;locus_tag=LLC55_RS09525;product=cyclopropane-fatty-acyl-phospholipid synthase family protein;protein_id=WP_011408291.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1997953 1998735 . - . ID=gene-LLC55_RS09530;Name=LLC55_RS09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09530;old_locus_tag=LLC55_09530 NZ_CP086200.1 Protein Homology CDS 1997953 1998735 . - 0 ID=cds-WP_011408292.1;Parent=gene-LLC55_RS09530;Dbxref=Genbank:WP_011408292.1;Name=WP_011408292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967316.1;locus_tag=LLC55_RS09530;product=DUF1295 domain-containing protein;protein_id=WP_011408292.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1998732 1999277 . - . ID=gene-LLC55_RS09535;Name=LLC55_RS09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09535;old_locus_tag=LLC55_09535 NZ_CP086200.1 Protein Homology CDS 1998732 1999277 . - 0 ID=cds-WP_011408293.1;Parent=gene-LLC55_RS09535;Dbxref=Genbank:WP_011408293.1;Name=WP_011408293.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451779.1;locus_tag=LLC55_RS09535;product=DUF2878 domain-containing protein;protein_id=WP_011408293.1;transl_table=11 NZ_CP086200.1 RefSeq gene 1999274 2000569 . - . ID=gene-LLC55_RS09540;Name=LLC55_RS09540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09540;old_locus_tag=LLC55_09540 NZ_CP086200.1 Protein Homology CDS 1999274 2000569 . - 0 ID=cds-WP_011408294.1;Parent=gene-LLC55_RS09540;Dbxref=Genbank:WP_011408294.1;Name=WP_011408294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380444.1;locus_tag=LLC55_RS09540;product=cyclopropane-fatty-acyl-phospholipid synthase family protein;protein_id=WP_011408294.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2000566 2001450 . - . ID=gene-LLC55_RS09545;Name=LLC55_RS09545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09545;old_locus_tag=LLC55_09545 NZ_CP086200.1 Protein Homology CDS 2000566 2001450 . - 0 ID=cds-WP_011408295.1;Parent=gene-LLC55_RS09545;Dbxref=Genbank:WP_011408295.1;Name=WP_011408295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485446.1;locus_tag=LLC55_RS09545;product=DUF1365 domain-containing protein;protein_id=WP_011408295.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2001450 2002700 . - . ID=gene-LLC55_RS09550;Name=LLC55_RS09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09550;old_locus_tag=LLC55_09550 NZ_CP086200.1 Protein Homology CDS 2001450 2002700 . - 0 ID=cds-WP_011408296.1;Parent=gene-LLC55_RS09550;Dbxref=Genbank:WP_011408296.1;Name=WP_011408296.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155653.1;locus_tag=LLC55_RS09550;product=FAD-dependent oxidoreductase;protein_id=WP_011408296.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2002697 2003695 . - . ID=gene-LLC55_RS09555;Name=LLC55_RS09555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09555;old_locus_tag=LLC55_09555 NZ_CP086200.1 Protein Homology CDS 2002697 2003695 . - 0 ID=cds-WP_011408297.1;Parent=gene-LLC55_RS09555;Dbxref=Genbank:WP_011408297.1;Name=WP_011408297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166055.1;locus_tag=LLC55_RS09555;product=acyl-CoA desaturase;protein_id=WP_011408297.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2003923 2004756 . - . ID=gene-LLC55_RS09560;Name=LLC55_RS09560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09560;old_locus_tag=LLC55_09560 NZ_CP086200.1 Protein Homology CDS 2003923 2004756 . - 0 ID=cds-WP_012445217.1;Parent=gene-LLC55_RS09560;Dbxref=Genbank:WP_012445217.1;Name=WP_012445217.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485441.1;locus_tag=LLC55_RS09560;product=anti-sigma factor;protein_id=WP_012445217.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2004753 2005316 . - . ID=gene-LLC55_RS09565;Name=LLC55_RS09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09565;old_locus_tag=LLC55_09565 NZ_CP086200.1 Protein Homology CDS 2004753 2005316 . - 0 ID=cds-WP_011258659.1;Parent=gene-LLC55_RS09565;Dbxref=Genbank:WP_011258659.1;Name=WP_011258659.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993590.1;locus_tag=LLC55_RS09565;product=sigma-70 family RNA polymerase sigma factor;protein_id=WP_011258659.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2005375 2005743 . - . ID=gene-LLC55_RS09570;Name=LLC55_RS09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09570;old_locus_tag=LLC55_09570 NZ_CP086200.1 Protein Homology CDS 2005375 2005743 . - 0 ID=cds-WP_012445216.1;Parent=gene-LLC55_RS09570;Dbxref=Genbank:WP_012445216.1;Name=WP_012445216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366091.1;locus_tag=LLC55_RS09570;product=hypothetical protein;protein_id=WP_012445216.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2005829 2006611 . - . ID=gene-LLC55_RS09575;Name=LLC55_RS09575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09575;old_locus_tag=LLC55_09575 NZ_CP086200.1 Protein Homology CDS 2005829 2006611 . - 0 ID=cds-WP_042464748.1;Parent=gene-LLC55_RS09575;Dbxref=Genbank:WP_042464748.1;Name=WP_042464748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258660.1;locus_tag=LLC55_RS09575;product=hypothetical protein;protein_id=WP_042464748.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2007230 2007658 . - . ID=gene-LLC55_RS09580;Name=rnfB;gbkey=Gene;gene=rnfB;gene_biotype=protein_coding;locus_tag=LLC55_RS09580;old_locus_tag=LLC55_09580 NZ_CP086200.1 Protein Homology CDS 2007230 2007658 . - 0 ID=cds-WP_011408301.1;Parent=gene-LLC55_RS09580;Dbxref=Genbank:WP_011408301.1;Name=WP_011408301.1;gbkey=CDS;gene=rnfB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113004.1;locus_tag=LLC55_RS09580;product=Rnf electron transport complex subunit RnfB;protein_id=WP_011408301.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2007660 2008256 . - . ID=gene-LLC55_RS09585;Name=LLC55_RS09585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09585;old_locus_tag=LLC55_09590 NZ_CP086200.1 Protein Homology CDS 2007660 2008256 . - 0 ID=cds-WP_041182084.1;Parent=gene-LLC55_RS09585;Dbxref=Genbank:WP_041182084.1;Name=WP_041182084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462990.1;locus_tag=LLC55_RS09585;product=HAD-IB family hydrolase;protein_id=WP_041182084.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2008464 2010548 . - . ID=gene-LLC55_RS09590;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=LLC55_RS09590;old_locus_tag=LLC55_09595 NZ_CP086200.1 Protein Homology CDS 2008464 2010548 . - 0 ID=cds-WP_011258663.1;Parent=gene-LLC55_RS09590;Dbxref=Genbank:WP_011258663.1;Name=WP_011258663.1;Ontology_term=GO:0006431,GO:0000166,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=nucleotide binding|0000166||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304414.1;locus_tag=LLC55_RS09590;product=methionine--tRNA ligase;protein_id=WP_011258663.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2010773 2011222 . - . ID=gene-LLC55_RS09595;Name=LLC55_RS09595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09595;old_locus_tag=LLC55_09600 NZ_CP086200.1 Protein Homology CDS 2010773 2011222 . - 0 ID=cds-WP_011408302.1;Parent=gene-LLC55_RS09595;Dbxref=Genbank:WP_011408302.1;Name=WP_011408302.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237831.1;locus_tag=LLC55_RS09595;product=DUF2147 domain-containing protein;protein_id=WP_011408302.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2011476 2011864 . - . ID=gene-LLC55_RS09600;Name=LLC55_RS09600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09600;old_locus_tag=LLC55_09605;pseudo=true NZ_CP086200.1 Protein Homology CDS 2011476 2011864 . - 0 ID=cds-LLC55_RS09600;Parent=gene-LLC55_RS09600;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159538.1;locus_tag=LLC55_RS09600;product=VOC family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2011986 2013044 . + . ID=gene-LLC55_RS09605;Name=LLC55_RS09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09605;old_locus_tag=LLC55_09610 NZ_CP086200.1 Protein Homology CDS 2011986 2013044 . + 0 ID=cds-WP_011408304.1;Parent=gene-LLC55_RS09605;Dbxref=Genbank:WP_011408304.1;Name=WP_011408304.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408304.1;locus_tag=LLC55_RS09605;product=IS630 family transposase;protein_id=WP_011408304.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2013315 2014712 . + . ID=gene-LLC55_RS09610;Name=mmuP;gbkey=Gene;gene=mmuP;gene_biotype=protein_coding;locus_tag=LLC55_RS09610;old_locus_tag=LLC55_09615 NZ_CP086200.1 Protein Homology CDS 2013315 2014712 . + 0 ID=cds-WP_011408305.1;Parent=gene-LLC55_RS09610;Dbxref=Genbank:WP_011408305.1;Name=WP_011408305.1;Ontology_term=GO:0055085;gbkey=CDS;gene=mmuP;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965585.1;locus_tag=LLC55_RS09610;product=S-methylmethionine permease;protein_id=WP_011408305.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2014709 2015686 . + . ID=gene-LLC55_RS09615;Name=mmuM;gbkey=Gene;gene=mmuM;gene_biotype=protein_coding;locus_tag=LLC55_RS09615;old_locus_tag=LLC55_09620 NZ_CP086200.1 Protein Homology CDS 2014709 2015686 . + 0 ID=cds-WP_011408306.1;Parent=gene-LLC55_RS09615;Dbxref=Genbank:WP_011408306.1;Name=WP_011408306.1;Ontology_term=GO:0009086,GO:0047150;gbkey=CDS;gene=mmuM;go_function=betaine-homocysteine S-methyltransferase activity|0047150||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258667.1;locus_tag=LLC55_RS09615;product=homocysteine S-methyltransferase;protein_id=WP_011408306.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2015868 2017805 . - . ID=gene-LLC55_RS09620;Name=LLC55_RS09620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09620;old_locus_tag=LLC55_09625 NZ_CP086200.1 Protein Homology CDS 2015868 2017805 . - 0 ID=cds-WP_069959816.1;Parent=gene-LLC55_RS09620;Dbxref=Genbank:WP_069959816.1;Name=WP_069959816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346878.1;locus_tag=LLC55_RS09620;product=DUF885 family protein;protein_id=WP_069959816.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2018087 2018163 . - . ID=gene-LLC55_RS09625;Name=LLC55_RS09625;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS09625;old_locus_tag=LLC55_09630 NZ_CP086200.1 cmsearch ncRNA 2018087 2018163 . - . ID=rna-LLC55_RS09625;Parent=gene-LLC55_RS09625;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09625;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2018087 2018163 . - . ID=exon-LLC55_RS09625-1;Parent=rna-LLC55_RS09625;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09625;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2018226 2019002 . - . ID=gene-LLC55_RS09630;Name=LLC55_RS09630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09630;old_locus_tag=LLC55_09635 NZ_CP086200.1 Protein Homology CDS 2018226 2019002 . - 0 ID=cds-WP_011258669.1;Parent=gene-LLC55_RS09630;Dbxref=Genbank:WP_011258669.1;Name=WP_011258669.1;Ontology_term=GO:1990397;gbkey=CDS;go_process=queuosine salvage|1990397||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155671.1;locus_tag=LLC55_RS09630;product=queuosine precursor transporter;protein_id=WP_011258669.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2019007 2019681 . - . ID=gene-LLC55_RS09635;Name=LLC55_RS09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09635;old_locus_tag=LLC55_09640 NZ_CP086200.1 Protein Homology CDS 2019007 2019681 . - 0 ID=cds-WP_011258670.1;Parent=gene-LLC55_RS09635;Dbxref=Genbank:WP_011258670.1;Name=WP_011258670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380413.1;locus_tag=LLC55_RS09635;product=DUF502 domain-containing protein;protein_id=WP_011258670.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2019915 2021154 . + . ID=gene-LLC55_RS09640;Name=LLC55_RS09640;end_range=2021154,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09640;old_locus_tag=LLC55_09645;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2019915 2021154 . + 0 ID=cds-LLC55_RS09640;Parent=gene-LLC55_RS09640;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2021154,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113001.1;locus_tag=LLC55_RS09640;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2021312 2022688 . + . ID=gene-LLC55_RS09645;Name=LLC55_RS09645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09645;old_locus_tag=LLC55_09650 NZ_CP086200.1 Protein Homology CDS 2021312 2022688 . + 0 ID=cds-WP_082323429.1;Parent=gene-LLC55_RS09645;Dbxref=Genbank:WP_082323429.1;Name=WP_082323429.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS09645;product=IS5 family transposase;protein_id=WP_082323429.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2022728 2023123 . - . ID=gene-LLC55_RS09650;Name=LLC55_RS09650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09650;old_locus_tag=LLC55_09655 NZ_CP086200.1 Protein Homology CDS 2022728 2023123 . - 0 ID=cds-WP_011408311.1;Parent=gene-LLC55_RS09650;Dbxref=Genbank:WP_011408311.1;Name=WP_011408311.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408311.1;locus_tag=LLC55_RS09650;product=SymE family type I addiction module toxin;protein_id=WP_011408311.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2023166 2024641 . - . ID=gene-LLC55_RS09655;Name=LLC55_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09655;old_locus_tag=LLC55_09660 NZ_CP086200.1 Protein Homology CDS 2023166 2024641 . - 0 ID=cds-WP_069959817.1;Parent=gene-LLC55_RS09655;Dbxref=Genbank:WP_069959817.1;Name=WP_069959817.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS09655;product=IS5-like element ISXoo5 family transposase;protein_id=WP_069959817.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2025440 2025856 . + . ID=gene-LLC55_RS09660;Name=LLC55_RS09660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09660;old_locus_tag=LLC55_09665 NZ_CP086200.1 GeneMarkS-2+ CDS 2025440 2025856 . + 0 ID=cds-WP_011408313.1;Parent=gene-LLC55_RS09660;Dbxref=Genbank:WP_011408313.1;Name=WP_011408313.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS09660;product=hypothetical protein;protein_id=WP_011408313.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2025870 2025983 . - . ID=gene-LLC55_RS09665;Name=LLC55_RS09665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09665;old_locus_tag=LLC55_09670 NZ_CP086200.1 Protein Homology CDS 2025870 2025983 . - 0 ID=cds-WP_229001950.1;Parent=gene-LLC55_RS09665;Dbxref=Genbank:WP_229001950.1;Name=WP_229001950.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013730.2;locus_tag=LLC55_RS09665;product=hypothetical protein;protein_id=WP_229001950.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2026175 2026453 . - . ID=gene-LLC55_RS09670;Name=cysC;end_range=2026453,.;gbkey=Gene;gene=cysC;gene_biotype=pseudogene;locus_tag=LLC55_RS09670;old_locus_tag=LLC55_09675;partial=true;pseudo=true;start_range=.,2026175 NZ_CP086200.1 Protein Homology CDS 2026175 2026453 . - 0 ID=cds-LLC55_RS09670;Parent=gene-LLC55_RS09670;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006790,GO:0004020;end_range=2026453,.;gbkey=CDS;gene=cysC;go_function=adenylylsulfate kinase activity|0004020||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167870.1;locus_tag=LLC55_RS09670;partial=true;product=adenylyl-sulfate kinase;pseudo=true;start_range=.,2026175;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2026452 2026904 . - . ID=gene-LLC55_RS09675;Name=nrdR;gbkey=Gene;gene=nrdR;gene_biotype=pseudogene;locus_tag=LLC55_RS09675;old_locus_tag=LLC55_09680;partial=true;pseudo=true;start_range=.,2026452 NZ_CP086200.1 Protein Homology CDS 2026452 2026904 . - 0 ID=cds-LLC55_RS09675;Parent=gene-LLC55_RS09675;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0140110;gbkey=CDS;gene=nrdR;go_function=transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453216.1;locus_tag=LLC55_RS09675;partial=true;product=transcriptional regulator NrdR;pseudo=true;start_range=.,2026452;transl_table=11 NZ_CP086200.1 RefSeq gene 2026904 2027419 . - . ID=gene-LLC55_RS09680;Name=LLC55_RS09680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09680;old_locus_tag=LLC55_09685 NZ_CP086200.1 Protein Homology CDS 2026904 2027419 . - 0 ID=cds-WP_011409395.1;Parent=gene-LLC55_RS09680;Dbxref=Genbank:WP_011409395.1;Name=WP_011409395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501960.1;locus_tag=LLC55_RS09680;product=hypothetical protein;protein_id=WP_011409395.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2027433 2028686 . - . ID=gene-LLC55_RS09685;Name=LLC55_RS09685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09685;old_locus_tag=LLC55_09690 NZ_CP086200.1 Protein Homology CDS 2027433 2028686 . - 0 ID=cds-WP_011260263.1;Parent=gene-LLC55_RS09685;Dbxref=Genbank:WP_011260263.1;Name=WP_011260263.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260263.1;locus_tag=LLC55_RS09685;product=serine hydroxymethyltransferase;protein_id=WP_011260263.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2028872 2031226 . - . ID=gene-LLC55_RS09690;Name=LLC55_RS09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09690;old_locus_tag=LLC55_09695 NZ_CP086200.1 Protein Homology CDS 2028872 2031226 . - 0 ID=cds-WP_041182269.1;Parent=gene-LLC55_RS09690;Dbxref=Genbank:WP_041182269.1;Name=WP_041182269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117272.1;locus_tag=LLC55_RS09690;product=TonB-dependent receptor;protein_id=WP_041182269.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2031312 2031773 . + . ID=gene-LLC55_RS09695;Name=LLC55_RS09695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09695;old_locus_tag=LLC55_09700 NZ_CP086200.1 GeneMarkS-2+ CDS 2031312 2031773 . + 0 ID=cds-WP_228329719.1;Parent=gene-LLC55_RS09695;Dbxref=Genbank:WP_228329719.1;Name=WP_228329719.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS09695;product=hypothetical protein;protein_id=WP_228329719.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2031898 2032467 . - . ID=gene-LLC55_RS09700;Name=LLC55_RS09700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09700;old_locus_tag=LLC55_09705 NZ_CP086200.1 Protein Homology CDS 2031898 2032467 . - 0 ID=cds-WP_075242171.1;Parent=gene-LLC55_RS09700;Dbxref=Genbank:WP_075242171.1;Name=WP_075242171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156712.1;locus_tag=LLC55_RS09700;product=RcnB family protein;protein_id=WP_075242171.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2032694 2034355 . + . ID=gene-LLC55_RS09705;Name=ettA;gbkey=Gene;gene=ettA;gene_biotype=protein_coding;locus_tag=LLC55_RS09705;old_locus_tag=LLC55_09710 NZ_CP086200.1 Protein Homology CDS 2032694 2034355 . + 0 ID=cds-WP_010367724.1;Parent=gene-LLC55_RS09705;Dbxref=Genbank:WP_010367724.1;Name=WP_010367724.1;Ontology_term=GO:0045900,GO:0005524;gbkey=CDS;gene=ettA;go_function=ATP binding|0005524||IEA;go_process=negative regulation of translational elongation|0045900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346396.1;locus_tag=LLC55_RS09705;product=energy-dependent translational throttle protein EttA;protein_id=WP_010367724.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2034536 2034874 . + . ID=gene-LLC55_RS09710;Name=LLC55_RS09710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09710;old_locus_tag=LLC55_09715 NZ_CP086200.1 Protein Homology CDS 2034536 2034874 . + 0 ID=cds-WP_019299887.1;Parent=gene-LLC55_RS09710;Dbxref=Genbank:WP_019299887.1;Name=WP_019299887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299887.1;locus_tag=LLC55_RS09710;product=hypothetical protein;protein_id=WP_019299887.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2034871 2035203 . - . ID=gene-LLC55_RS09715;Name=LLC55_RS09715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09715;old_locus_tag=LLC55_09720 NZ_CP086200.1 Protein Homology CDS 2034871 2035203 . - 0 ID=cds-WP_011409398.1;Parent=gene-LLC55_RS09715;Dbxref=Genbank:WP_011409398.1;Name=WP_011409398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409398.1;locus_tag=LLC55_RS09715;product=DUF4386 domain-containing protein;protein_id=WP_011409398.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2035361 2035588 . - . ID=gene-LLC55_RS09720;Name=LLC55_RS09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09720;old_locus_tag=LLC55_09725 NZ_CP086200.1 Protein Homology CDS 2035361 2035588 . - 0 ID=cds-WP_012444166.1;Parent=gene-LLC55_RS09720;Dbxref=Genbank:WP_012444166.1;Name=WP_012444166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501951.1;locus_tag=LLC55_RS09720;product=DUF4386 family protein;protein_id=WP_012444166.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2035718 2036548 . - . ID=gene-LLC55_RS09725;Name=fghA;gbkey=Gene;gene=fghA;gene_biotype=pseudogene;locus_tag=LLC55_RS09725;old_locus_tag=LLC55_09730;pseudo=true NZ_CP086200.1 Protein Homology CDS 2035718 2036548 . - 0 ID=cds-LLC55_RS09725;Parent=gene-LLC55_RS09725;Note=internal stop;Ontology_term=GO:0046292,GO:0018738;gbkey=CDS;gene=fghA;go_function=S-formylglutathione hydrolase activity|0018738||IEA;go_process=formaldehyde metabolic process|0046292||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902627.1;locus_tag=LLC55_RS09725;product=S-formylglutathione hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2036558 2037181 . - . ID=gene-LLC55_RS09730;Name=gfa;gbkey=Gene;gene=gfa;gene_biotype=protein_coding;locus_tag=LLC55_RS09730;old_locus_tag=LLC55_09735 NZ_CP086200.1 Protein Homology CDS 2036558 2037181 . - 0 ID=cds-WP_228329720.1;Parent=gene-LLC55_RS09730;Dbxref=Genbank:WP_228329720.1;Name=WP_228329720.1;Ontology_term=GO:0046292,GO:0051907;gbkey=CDS;gene=gfa;go_function=S-(hydroxymethyl)glutathione synthase activity|0051907||IEA;go_process=formaldehyde metabolic process|0046292||IEA;inference=COORDINATES: protein motif:HMM:NF003829.0;locus_tag=LLC55_RS09730;product=S-(hydroxymethyl)glutathione synthase;protein_id=WP_228329720.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2037250 2038359 . - . ID=gene-LLC55_RS09735;Name=LLC55_RS09735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09735;old_locus_tag=LLC55_09740 NZ_CP086200.1 Protein Homology CDS 2037250 2038359 . - 0 ID=cds-WP_011409400.1;Parent=gene-LLC55_RS09735;Dbxref=Genbank:WP_011409400.1;Name=WP_011409400.1;Ontology_term=GO:0006113,GO:0009404,GO:0004024,GO:0051903;gbkey=CDS;go_function=alcohol dehydrogenase activity%2C zinc-dependent|0004024||IEA,S-(hydroxymethyl)glutathione dehydrogenase activity|0051903||IEA;go_process=fermentation|0006113||IEA,toxin metabolic process|0009404||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477647.1;locus_tag=LLC55_RS09735;product=S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase;protein_id=WP_011409400.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2038424 2038699 . - . ID=gene-LLC55_RS09740;Name=LLC55_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09740;old_locus_tag=LLC55_09745 NZ_CP086200.1 Protein Homology CDS 2038424 2038699 . - 0 ID=cds-WP_011260271.1;Parent=gene-LLC55_RS09740;Dbxref=Genbank:WP_011260271.1;Name=WP_011260271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017384071.1;locus_tag=LLC55_RS09740;product=metal/formaldehyde-sensitive transcriptional repressor;protein_id=WP_011260271.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2039584 2040684 . - . ID=gene-LLC55_RS09745;Name=LLC55_RS09745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09745;old_locus_tag=LLC55_09750 NZ_CP086200.1 Protein Homology CDS 2039584 2040684 . - 0 ID=cds-WP_011260272.1;Parent=gene-LLC55_RS09745;Dbxref=Genbank:WP_011260272.1;Name=WP_011260272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112264.1;locus_tag=LLC55_RS09745;product=glycosyltransferase;protein_id=WP_011260272.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2040814 2041542 . + . ID=gene-LLC55_RS09750;Name=LLC55_RS09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09750;old_locus_tag=LLC55_09755 NZ_CP086200.1 Protein Homology CDS 2040814 2041542 . + 0 ID=cds-WP_011409403.1;Parent=gene-LLC55_RS09750;Dbxref=Genbank:WP_011409403.1;Name=WP_011409403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902620.1;locus_tag=LLC55_RS09750;product=response regulator transcription factor;protein_id=WP_011409403.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2041539 2043038 . + . ID=gene-LLC55_RS09755;Name=LLC55_RS09755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09755;old_locus_tag=LLC55_09760 NZ_CP086200.1 Protein Homology CDS 2041539 2043038 . + 0 ID=cds-WP_011409404.1;Parent=gene-LLC55_RS09755;Dbxref=Genbank:WP_011409404.1;Name=WP_011409404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365576.1;locus_tag=LLC55_RS09755;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_011409404.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2043071 2043997 . - . ID=gene-LLC55_RS09760;Name=LLC55_RS09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09760;old_locus_tag=LLC55_09765 NZ_CP086200.1 Protein Homology CDS 2043071 2043997 . - 0 ID=cds-WP_042465225.1;Parent=gene-LLC55_RS09760;Dbxref=Genbank:WP_042465225.1;Name=WP_042465225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118219.1;locus_tag=LLC55_RS09760;product=hypothetical protein;protein_id=WP_042465225.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2044019 2044564 . - . ID=gene-LLC55_RS09765;Name=LLC55_RS09765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09765;old_locus_tag=LLC55_09770 NZ_CP086200.1 Protein Homology CDS 2044019 2044564 . - 0 ID=cds-WP_228329721.1;Parent=gene-LLC55_RS09765;Dbxref=Genbank:WP_228329721.1;Name=WP_228329721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299880.1;locus_tag=LLC55_RS09765;product=hypothetical protein;protein_id=WP_228329721.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2044966 2045451 . + . ID=gene-LLC55_RS09770;Name=LLC55_RS09770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09770;old_locus_tag=LLC55_09775 NZ_CP086200.1 Protein Homology CDS 2044966 2045451 . + 0 ID=cds-WP_011409407.1;Parent=gene-LLC55_RS09770;Dbxref=Genbank:WP_011409407.1;Name=WP_011409407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377824.1;locus_tag=LLC55_RS09770;product=hypothetical protein;protein_id=WP_011409407.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2045514 2046281 . - . ID=gene-LLC55_RS09775;Name=LLC55_RS09775;end_range=2046281,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09775;old_locus_tag=LLC55_09780;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2045514 2046281 . - 0 ID=cds-LLC55_RS09775;Parent=gene-LLC55_RS09775;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0042398,GO:0004357;end_range=2046281,.;gbkey=CDS;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=cellular modified amino acid biosynthetic process|0042398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477658.1;locus_tag=LLC55_RS09775;partial=true;product=glutamate-cysteine ligase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2046367 2047686 . - . ID=gene-LLC55_RS09780;Name=LLC55_RS09780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09780;old_locus_tag=LLC55_09785 NZ_CP086200.1 Protein Homology CDS 2046367 2047686 . - 0 ID=cds-WP_205412332.1;Parent=gene-LLC55_RS09780;Dbxref=Genbank:WP_205412332.1;Name=WP_205412332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS09780;product=IS701-like element ISXo15 family transposase;protein_id=WP_205412332.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2047759 2048178 . - . ID=gene-LLC55_RS23370;Name=LLC55_RS23370;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23370;partial=true;pseudo=true;start_range=.,2047759 NZ_CP086200.1 Protein Homology CDS 2047759 2048178 . - 0 ID=cds-LLC55_RS23370;Parent=gene-LLC55_RS23370;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0042398,GO:0004357;gbkey=CDS;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=cellular modified amino acid biosynthetic process|0042398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014162019.1;locus_tag=LLC55_RS23370;partial=true;product=glutamate-cysteine ligase family protein;pseudo=true;start_range=.,2047759;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2048145 2049063 . + . ID=gene-LLC55_RS09785;Name=LLC55_RS09785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09785;old_locus_tag=LLC55_09790;partial=true;pseudo=true;start_range=.,2048145 NZ_CP086200.1 Protein Homology CDS 2048145 2049063 . + 0 ID=cds-LLC55_RS09785;Parent=gene-LLC55_RS09785;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576761.1;locus_tag=LLC55_RS09785;partial=true;product=ATP-binding protein;pseudo=true;start_range=.,2048145;transl_table=11 NZ_CP086200.1 RefSeq gene 2049250 2050614 . - . ID=gene-LLC55_RS09790;Name=LLC55_RS09790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09790;old_locus_tag=LLC55_09795 NZ_CP086200.1 Protein Homology CDS 2049250 2050614 . - 0 ID=cds-WP_011260279.1;Parent=gene-LLC55_RS09790;Dbxref=Genbank:WP_011260279.1;Name=WP_011260279.1;Ontology_term=GO:0006750,GO:0004357;gbkey=CDS;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477658.1;locus_tag=LLC55_RS09790;product=glutamate--cysteine ligase;protein_id=WP_011260279.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2050830 2051525 . + . ID=gene-LLC55_RS09795;Name=LLC55_RS09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09795;old_locus_tag=LLC55_09800 NZ_CP086200.1 Protein Homology CDS 2050830 2051525 . + 0 ID=cds-WP_011409411.1;Parent=gene-LLC55_RS09795;Dbxref=Genbank:WP_011409411.1;Name=WP_011409411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171583.1;locus_tag=LLC55_RS09795;product=VIT family protein;protein_id=WP_011409411.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2051534 2052332 . - . ID=gene-LLC55_RS09800;Name=LLC55_RS09800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09800;old_locus_tag=LLC55_09805;pseudo=true NZ_CP086200.1 Protein Homology CDS 2051534 2052332 . - 0 ID=cds-LLC55_RS09800;Parent=gene-LLC55_RS09800;Note=programmed frameshift%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS09800;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2052472 2053095 . - . ID=gene-LLC55_RS09805;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=LLC55_RS09805;old_locus_tag=LLC55_09810 NZ_CP086200.1 Protein Homology CDS 2052472 2053095 . - 0 ID=cds-WP_011409413.1;Parent=gene-LLC55_RS09805;Dbxref=Genbank:WP_011409413.1;Name=WP_011409413.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156699.1;locus_tag=LLC55_RS09805;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=WP_011409413.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2053240 2054037 . + . ID=gene-LLC55_RS09810;Name=LLC55_RS09810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09810;old_locus_tag=LLC55_09815 NZ_CP086200.1 Protein Homology CDS 2053240 2054037 . + 0 ID=cds-WP_011260283.1;Parent=gene-LLC55_RS09810;Dbxref=Genbank:WP_011260283.1;Name=WP_011260283.1;Ontology_term=GO:0009055,GO:0020037;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911041.1;locus_tag=LLC55_RS09810;product=c-type cytochrome;protein_id=WP_011260283.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2054131 2054781 . + . ID=gene-LLC55_RS09815;Name=LLC55_RS09815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09815;old_locus_tag=LLC55_09820 NZ_CP086200.1 Protein Homology CDS 2054131 2054781 . + 0 ID=cds-WP_011409415.1;Parent=gene-LLC55_RS09815;Dbxref=Genbank:WP_011409415.1;Name=WP_011409415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482610.1;locus_tag=LLC55_RS09815;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=WP_011409415.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2054873 2055688 . + . ID=gene-LLC55_RS09820;Name=LLC55_RS09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09820;old_locus_tag=LLC55_09825 NZ_CP086200.1 Protein Homology CDS 2054873 2055688 . + 0 ID=cds-WP_011260284.1;Parent=gene-LLC55_RS09820;Dbxref=Genbank:WP_011260284.1;Name=WP_011260284.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089366.1;locus_tag=LLC55_RS09820;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=WP_011260284.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2055738 2056475 . + . ID=gene-LLC55_RS09825;Name=LLC55_RS09825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09825;old_locus_tag=LLC55_09830 NZ_CP086200.1 Protein Homology CDS 2055738 2056475 . + 0 ID=cds-WP_011409416.1;Parent=gene-LLC55_RS09825;Dbxref=Genbank:WP_011409416.1;Name=WP_011409416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409416.1;locus_tag=LLC55_RS09825;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_011409416.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2056613 2057189 . + . ID=gene-LLC55_RS09830;Name=LLC55_RS09830;end_range=2057189,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09830;old_locus_tag=LLC55_09835;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2056613 2057189 . + 0 ID=cds-LLC55_RS09830;Parent=gene-LLC55_RS09830;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0071705,GO:0022857,GO:0016020;end_range=2057189,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451628.1;locus_tag=LLC55_RS09830;partial=true;product=BCCT family transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2057220 2058263 . - . ID=gene-LLC55_RS09835;Name=LLC55_RS09835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09835;old_locus_tag=LLC55_09840;pseudo=true NZ_CP086200.1 Protein Homology CDS 2057220 2058263 . - 0 ID=cds-LLC55_RS09835;Parent=gene-LLC55_RS09835;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS09835;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2058404 2059393 . + . ID=gene-LLC55_RS09840;Name=LLC55_RS09840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09840;old_locus_tag=LLC55_09845 NZ_CP086200.1 Protein Homology CDS 2058404 2059393 . + 0 ID=cds-WP_011409419.1;Parent=gene-LLC55_RS09840;Dbxref=Genbank:WP_011409419.1;Name=WP_011409419.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_022557821.1;locus_tag=LLC55_RS09840;product=IS5 family transposase;protein_id=WP_011409419.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2059465 2062089 . + . ID=gene-LLC55_RS09845;Name=LLC55_RS09845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09845;old_locus_tag=LLC55_09850 NZ_CP086200.1 Protein Homology CDS 2059465 2062089 . + 0 ID=cds-WP_220123702.1;Parent=gene-LLC55_RS09845;Dbxref=Genbank:WP_220123702.1;Name=WP_220123702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409420.1;locus_tag=LLC55_RS09845;product=pyridoxal-phosphate dependent enzyme;protein_id=WP_220123702.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2062282 2063045 . + . ID=gene-LLC55_RS09850;Name=LLC55_RS09850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09850;old_locus_tag=LLC55_09855 NZ_CP086200.1 Protein Homology CDS 2062282 2062597 . + 0 ID=cds-WP_109182012.1-5;Parent=gene-LLC55_RS09850;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS09850;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2062597 2063045 . + 2 ID=cds-WP_109182012.1-5;Parent=gene-LLC55_RS09850;Dbxref=Genbank:WP_109182012.1;Name=WP_109182012.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS09850;product=IS5 family transposase;protein_id=WP_109182012.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2063214 2064590 . + . ID=gene-LLC55_RS09855;Name=LLC55_RS09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09855;old_locus_tag=LLC55_09860 NZ_CP086200.1 Protein Homology CDS 2063214 2064590 . + 0 ID=cds-WP_069964507.1-3;Parent=gene-LLC55_RS09855;Dbxref=Genbank:WP_069964507.1;Name=WP_069964507.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS09855;product=IS5-like element ISXo4 family transposase;protein_id=WP_069964507.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2064637 2065605 . + . ID=gene-LLC55_RS09860;Name=LLC55_RS09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09860;old_locus_tag=LLC55_09865 NZ_CP086200.1 Protein Homology CDS 2064637 2065605 . + 0 ID=cds-WP_011257031.1-3;Parent=gene-LLC55_RS09860;Dbxref=Genbank:WP_011257031.1;Name=WP_011257031.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS09860;product=IS5-like element ISXo1 family transposase;protein_id=WP_011257031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2065960 2067336 . + . ID=gene-LLC55_RS09865;Name=LLC55_RS09865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09865;old_locus_tag=LLC55_09870 NZ_CP086200.1 Protein Homology CDS 2065960 2067336 . + 0 ID=cds-WP_069964507.1-4;Parent=gene-LLC55_RS09865;Dbxref=Genbank:WP_069964507.1;Name=WP_069964507.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS09865;product=IS5-like element ISXo4 family transposase;protein_id=WP_069964507.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2067424 2067762 . + . ID=gene-LLC55_RS09870;Name=LLC55_RS09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09870;old_locus_tag=LLC55_09875 NZ_CP086200.1 GeneMarkS-2+ CDS 2067424 2067762 . + 0 ID=cds-WP_207927976.1;Parent=gene-LLC55_RS09870;Dbxref=Genbank:WP_207927976.1;Name=WP_207927976.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS09870;product=hypothetical protein;protein_id=WP_207927976.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2067858 2068189 . + . ID=gene-LLC55_RS09875;Name=LLC55_RS09875;end_range=2068189,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09875;old_locus_tag=LLC55_09880;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2067858 2068189 . + 0 ID=cds-LLC55_RS09875;Parent=gene-LLC55_RS09875;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2068189,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612267.1;locus_tag=LLC55_RS09875;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2068302 2069048 . + . ID=gene-LLC55_RS09880;Name=LLC55_RS09880;end_range=2069048,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09880;old_locus_tag=LLC55_09885;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2068302 2069048 . + 0 ID=cds-LLC55_RS09880;Parent=gene-LLC55_RS09880;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=2069048,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS09880;partial=true;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2069056 2069854 . - . ID=gene-LLC55_RS09885;Name=LLC55_RS09885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09885;old_locus_tag=LLC55_09890 NZ_CP086200.1 Protein Homology CDS 2069583 2069854 . - 0 ID=cds-WP_094187728.1-2;Parent=gene-LLC55_RS09885;Dbxref=Genbank:WP_094187728.1;Name=WP_094187728.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS09885;product=IS5 family transposase;protein_id=WP_094187728.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2069056 2069584 . - 1 ID=cds-WP_094187728.1-2;Parent=gene-LLC55_RS09885;Dbxref=Genbank:WP_094187728.1;Name=WP_094187728.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS09885;product=IS5 family transposase;protein_id=WP_094187728.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2069898 2070473 . + . ID=gene-LLC55_RS09890;Name=LLC55_RS09890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09890;old_locus_tag=LLC55_09895;partial=true;pseudo=true;start_range=.,2069898 NZ_CP086200.1 Protein Homology CDS 2069898 2070473 . + 0 ID=cds-LLC55_RS09890;Parent=gene-LLC55_RS09890;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS09890;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,2069898;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2070676 2071416 . + . ID=gene-LLC55_RS09895;Name=LLC55_RS09895;end_range=2071416,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09895;old_locus_tag=LLC55_09900;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2070676 2071416 . + 0 ID=cds-LLC55_RS09895;Parent=gene-LLC55_RS09895;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=2071416,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS09895;partial=true;product=IS5-like element ISXoo4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2071501 2072733 . + . ID=gene-LLC55_RS09900;Name=LLC55_RS09900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09900;old_locus_tag=LLC55_09905 NZ_CP086200.1 Protein Homology CDS 2071501 2072733 . + 0 ID=cds-WP_011260292.1;Parent=gene-LLC55_RS09900;Dbxref=Genbank:WP_011260292.1;Name=WP_011260292.1;Ontology_term=GO:0001680,GO:0003723,GO:0004810,GO:0005524;gbkey=CDS;go_function=RNA binding|0003723||IEA,CCA tRNA nucleotidyltransferase|0004810||IEA,ATP binding|0005524||IEA;go_process=tRNA 3'-terminal CCA addition|0001680||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159082.1;locus_tag=LLC55_RS09900;product=multifunctional CCA addition/repair protein;protein_id=WP_011260292.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2072773 2073735 . - . ID=gene-LLC55_RS09905;Name=LLC55_RS09905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09905;old_locus_tag=LLC55_09910 NZ_CP086200.1 Protein Homology CDS 2072773 2073735 . - 0 ID=cds-WP_011409423.1;Parent=gene-LLC55_RS09905;Dbxref=Genbank:WP_011409423.1;Name=WP_011409423.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259790.1;locus_tag=LLC55_RS09905;product=IS1595-like element ISXo16 family transposase;protein_id=WP_011409423.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2073911 2074867 . - . ID=gene-LLC55_RS09910;Name=LLC55_RS09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09910;old_locus_tag=LLC55_09915 NZ_CP086200.1 Protein Homology CDS 2073911 2074867 . - 0 ID=cds-WP_228329722.1;Parent=gene-LLC55_RS09910;Dbxref=Genbank:WP_228329722.1;Name=WP_228329722.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS09910;product=IS30-like element IS1112a family transposase;protein_id=WP_228329722.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2075079 2076047 . - . ID=gene-LLC55_RS09915;Name=LLC55_RS09915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09915;old_locus_tag=LLC55_09920 NZ_CP086200.1 Protein Homology CDS 2075079 2076047 . - 0 ID=cds-WP_011258802.1-7;Parent=gene-LLC55_RS09915;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS09915;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2076182 2076257 . - . ID=gene-LLC55_RS09920;Name=LLC55_RS09920;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS09920;old_locus_tag=LLC55_09925 NZ_CP086200.1 cmsearch ncRNA 2076182 2076257 . - . ID=rna-LLC55_RS09920;Parent=gene-LLC55_RS09920;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09920;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2076182 2076257 . - . ID=exon-LLC55_RS09920-1;Parent=rna-LLC55_RS09920;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS09920;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2076383 2077146 . + . ID=gene-LLC55_RS09925;Name=LLC55_RS09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09925;old_locus_tag=LLC55_09930 NZ_CP086200.1 Protein Homology CDS 2076383 2076698 . + 0 ID=cds-WP_094187715.1-3;Parent=gene-LLC55_RS09925;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS09925;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2076698 2077146 . + 2 ID=cds-WP_094187715.1-3;Parent=gene-LLC55_RS09925;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS09925;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2077177 2077497 . - . ID=gene-LLC55_RS09930;Name=LLC55_RS09930;end_range=2077497,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09930;old_locus_tag=LLC55_09935;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2077177 2077497 . - 0 ID=cds-LLC55_RS09930;Parent=gene-LLC55_RS09930;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2077497,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089361.1;locus_tag=LLC55_RS09930;partial=true;product=TonB-dependent receptor;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2077672 2079920 . - . ID=gene-LLC55_RS09935;Name=LLC55_RS09935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09935;old_locus_tag=LLC55_09940;partial=true;pseudo=true;start_range=.,2077672 NZ_CP086200.1 Protein Homology CDS 2077672 2079920 . - 0 ID=cds-LLC55_RS09935;Parent=gene-LLC55_RS09935;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508960.1;locus_tag=LLC55_RS09935;partial=true;product=TonB-dependent receptor;pseudo=true;start_range=.,2077672;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2080556 2081521 . + . ID=gene-LLC55_RS09940;Name=LLC55_RS09940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS09940;old_locus_tag=LLC55_09945;pseudo=true NZ_CP086200.1 Protein Homology CDS 2080556 2081521 . + 0 ID=cds-LLC55_RS09940;Parent=gene-LLC55_RS09940;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS09940;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2081983 2082213 . - . ID=gene-LLC55_RS09945;Name=LLC55_RS09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09945;old_locus_tag=LLC55_09950 NZ_CP086200.1 Protein Homology CDS 2081983 2082213 . - 0 ID=cds-WP_012444134.1;Parent=gene-LLC55_RS09945;Dbxref=Genbank:WP_012444134.1;Name=WP_012444134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301884.1;locus_tag=LLC55_RS09945;product=hypothetical protein;protein_id=WP_012444134.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2082838 2084880 . + . ID=gene-LLC55_RS09950;Name=pgaA;gbkey=Gene;gene=pgaA;gene_biotype=protein_coding;locus_tag=LLC55_RS09950;old_locus_tag=LLC55_09955 NZ_CP086200.1 Protein Homology CDS 2082838 2084880 . + 0 ID=cds-WP_011409428.1;Parent=gene-LLC55_RS09950;Dbxref=Genbank:WP_011409428.1;Name=WP_011409428.1;Ontology_term=GO:0015774,GO:0042710,GO:0005215,GO:0009279;gbkey=CDS;gene=pgaA;go_component=cell outer membrane|0009279||IEA;go_function=transporter activity|0005215||IEA;go_process=polysaccharide transport|0015774||IEA,biofilm formation|0042710||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444133.1;locus_tag=LLC55_RS09950;product=poly-beta-1%2C6 N-acetyl-D-glucosamine export porin PgaA;protein_id=WP_011409428.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2084882 2086780 . + . ID=gene-LLC55_RS09955;Name=pgaB;gbkey=Gene;gene=pgaB;gene_biotype=protein_coding;locus_tag=LLC55_RS09955;old_locus_tag=LLC55_09960 NZ_CP086200.1 Protein Homology CDS 2084882 2086780 . + 0 ID=cds-WP_011409429.1;Parent=gene-LLC55_RS09955;Dbxref=Genbank:WP_011409429.1;Name=WP_011409429.1;Ontology_term=GO:0045226,GO:0019213;gbkey=CDS;gene=pgaB;go_function=deacetylase activity|0019213||IEA;go_process=extracellular polysaccharide biosynthetic process|0045226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301885.1;locus_tag=LLC55_RS09955;product=poly-beta-1%2C6-N-acetyl-D-glucosamine N-deacetylase PgaB;protein_id=WP_011409429.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2086782 2088035 . + . ID=gene-LLC55_RS09960;Name=pgaC;gbkey=Gene;gene=pgaC;gene_biotype=protein_coding;locus_tag=LLC55_RS09960;old_locus_tag=LLC55_09965 NZ_CP086200.1 Protein Homology CDS 2086782 2088035 . + 0 ID=cds-WP_011260297.1;Parent=gene-LLC55_RS09960;Dbxref=Genbank:WP_011260297.1;Name=WP_011260297.1;Ontology_term=GO:0042710,GO:0008375;gbkey=CDS;gene=pgaC;go_function=acetylglucosaminyltransferase activity|0008375||IEA;go_process=biofilm formation|0042710||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304732.1;locus_tag=LLC55_RS09960;product=poly-beta-1%2C6-N-acetyl-D-glucosamine synthase;protein_id=WP_011260297.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2088032 2088637 . + . ID=gene-LLC55_RS09965;Name=pgaD;gbkey=Gene;gene=pgaD;gene_biotype=protein_coding;locus_tag=LLC55_RS09965;old_locus_tag=LLC55_09970 NZ_CP086200.1 Protein Homology CDS 2088032 2088637 . + 0 ID=cds-WP_044756435.1;Parent=gene-LLC55_RS09965;Dbxref=Genbank:WP_044756435.1;Name=WP_044756435.1;Ontology_term=GO:0000271,GO:0042710,GO:0008375,GO:0016020;gbkey=CDS;gene=pgaD;go_component=membrane|0016020||IEA;go_function=acetylglucosaminyltransferase activity|0008375||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA,biofilm formation|0042710||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501922.1;locus_tag=LLC55_RS09965;product=poly-beta-1%2C6-N-acetyl-D-glucosamine biosynthesis protein PgaD;protein_id=WP_044756435.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2089057 2090211 . - . ID=gene-LLC55_RS09970;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=LLC55_RS09970;old_locus_tag=LLC55_09975 NZ_CP086200.1 Protein Homology CDS 2089057 2090211 . - 0 ID=cds-WP_044756434.1;Parent=gene-LLC55_RS09970;Dbxref=Genbank:WP_044756434.1;Name=WP_044756434.1;Ontology_term=GO:0006040,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=amino sugar metabolic process|0006040||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974066.1;locus_tag=LLC55_RS09970;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_044756434.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2090214 2091242 . - . ID=gene-LLC55_RS09975;Name=LLC55_RS09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09975;old_locus_tag=LLC55_09980 NZ_CP086200.1 Protein Homology CDS 2090214 2091242 . - 0 ID=cds-WP_011260300.1;Parent=gene-LLC55_RS09975;Dbxref=Genbank:WP_011260300.1;Name=WP_011260300.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995982.1;locus_tag=LLC55_RS09975;product=SIS domain-containing protein;protein_id=WP_011260300.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2091249 2092316 . - . ID=gene-LLC55_RS09980;Name=LLC55_RS09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09980;old_locus_tag=LLC55_09985 NZ_CP086200.1 Protein Homology CDS 2091249 2092316 . - 0 ID=cds-WP_012444129.1;Parent=gene-LLC55_RS09980;Dbxref=Genbank:WP_012444129.1;Name=WP_012444129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301891.1;locus_tag=LLC55_RS09980;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_012444129.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2092357 2093634 . - . ID=gene-LLC55_RS09985;Name=LLC55_RS09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09985;old_locus_tag=LLC55_09990 NZ_CP086200.1 Protein Homology CDS 2092357 2093634 . - 0 ID=cds-WP_027703724.1;Parent=gene-LLC55_RS09985;Dbxref=Genbank:WP_027703724.1;Name=WP_027703724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911064.1;locus_tag=LLC55_RS09985;product=sugar MFS transporter;protein_id=WP_027703724.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2093679 2094401 . - . ID=gene-LLC55_RS09990;Name=LLC55_RS09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09990;old_locus_tag=LLC55_09995 NZ_CP086200.1 Protein Homology CDS 2093679 2094401 . - 0 ID=cds-WP_012444126.1;Parent=gene-LLC55_RS09990;Dbxref=Genbank:WP_012444126.1;Name=WP_012444126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156688.1;locus_tag=LLC55_RS09990;product=GntR family transcriptional regulator;protein_id=WP_012444126.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2094661 2095827 . - . ID=gene-LLC55_RS09995;Name=LLC55_RS09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS09995;old_locus_tag=LLC55_10000 NZ_CP086200.1 Protein Homology CDS 2094661 2095827 . - 0 ID=cds-WP_011409433.1;Parent=gene-LLC55_RS09995;Dbxref=Genbank:WP_011409433.1;Name=WP_011409433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911069.1;locus_tag=LLC55_RS09995;product=heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein;protein_id=WP_011409433.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2095973 2098369 . - . ID=gene-LLC55_RS10000;Name=LLC55_RS10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10000;old_locus_tag=LLC55_10005 NZ_CP086200.1 Protein Homology CDS 2095973 2098369 . - 0 ID=cds-WP_069960326.1;Parent=gene-LLC55_RS10000;Dbxref=Genbank:WP_069960326.1;Name=WP_069960326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368195.1;locus_tag=LLC55_RS10000;product=alpha-N-acetylglucosaminidase;protein_id=WP_069960326.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2098366 2101263 . - . ID=gene-LLC55_RS10005;Name=LLC55_RS10005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10005;old_locus_tag=LLC55_10010 NZ_CP086200.1 Protein Homology CDS 2098366 2101263 . - 0 ID=cds-WP_011260306.1;Parent=gene-LLC55_RS10005;Dbxref=Genbank:WP_011260306.1;Name=WP_011260306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451298.1;locus_tag=LLC55_RS10005;product=DUF4982 domain-containing protein;protein_id=WP_011260306.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2101414 2104104 . - . ID=gene-LLC55_RS10010;Name=LLC55_RS10010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10010;old_locus_tag=LLC55_10015 NZ_CP086200.1 Protein Homology CDS 2101414 2104104 . - 0 ID=cds-WP_069960264.1;Parent=gene-LLC55_RS10010;Dbxref=Genbank:WP_069960264.1;Name=WP_069960264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050492.1;locus_tag=LLC55_RS10010;product=TonB-dependent receptor;protein_id=WP_069960264.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2104386 2104496 . - . ID=gene-LLC55_RS10015;Name=LLC55_RS10015;end_range=2104496,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10015;old_locus_tag=LLC55_10020;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2104386 2104496 . - 0 ID=cds-LLC55_RS10015;Parent=gene-LLC55_RS10015;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2104496,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS10015;partial=true;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2104548 2105659 . + . ID=gene-LLC55_RS10020;Name=LLC55_RS10020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10020;old_locus_tag=LLC55_10025;pseudo=true NZ_CP086200.1 Protein Homology CDS 2104548 2105659 . + 0 ID=cds-LLC55_RS10020;Parent=gene-LLC55_RS10020;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612143.1;locus_tag=LLC55_RS10020;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2105694 2105968 . + . ID=gene-LLC55_RS10025;Name=LLC55_RS10025;end_range=2105968,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10025;old_locus_tag=LLC55_10030;partial=true;pseudo=true;start_range=.,2105694 NZ_CP086200.1 Protein Homology CDS 2105694 2105968 . + 0 ID=cds-LLC55_RS10025;Parent=gene-LLC55_RS10025;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0015074;end_range=2105968,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612215.1;locus_tag=LLC55_RS10025;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,2105694;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2106008 2106196 . - . ID=gene-LLC55_RS10030;Name=LLC55_RS10030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10030;old_locus_tag=LLC55_10035;partial=true;pseudo=true;start_range=.,2106008 NZ_CP086200.1 Protein Homology CDS 2106008 2106196 . - 0 ID=cds-LLC55_RS10030;Parent=gene-LLC55_RS10030;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968563.1;locus_tag=LLC55_RS10030;partial=true;product=VanZ family protein;pseudo=true;start_range=.,2106008;transl_table=11 NZ_CP086200.1 RefSeq gene 2106184 2107437 . - . ID=gene-LLC55_RS10035;Name=LLC55_RS10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10035;old_locus_tag=LLC55_10040 NZ_CP086200.1 Protein Homology CDS 2106184 2107437 . - 0 ID=cds-WP_011409441.1;Parent=gene-LLC55_RS10035;Dbxref=Genbank:WP_011409441.1;Name=WP_011409441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237264.1;locus_tag=LLC55_RS10035;product=class I SAM-dependent methyltransferase;protein_id=WP_011409441.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2107436 2108173 . + . ID=gene-LLC55_RS10040;Name=LLC55_RS10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10040;old_locus_tag=LLC55_10045 NZ_CP086200.1 Protein Homology CDS 2107436 2108173 . + 0 ID=cds-WP_011409442.1;Parent=gene-LLC55_RS10040;Dbxref=Genbank:WP_011409442.1;Name=WP_011409442.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303260.1;locus_tag=LLC55_RS10040;product=pteridine reductase;protein_id=WP_011409442.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2108342 2108857 . - . ID=gene-LLC55_RS10045;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=LLC55_RS10045;old_locus_tag=LLC55_10050 NZ_CP086200.1 Protein Homology CDS 2108342 2108857 . - 0 ID=cds-WP_011260313.1;Parent=gene-LLC55_RS10045;Dbxref=Genbank:WP_011260313.1;Name=WP_011260313.1;Ontology_term=GO:0009396,GO:0003848;gbkey=CDS;gene=folK;go_function=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|0003848||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482682.1;locus_tag=LLC55_RS10045;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_011260313.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2108949 2110451 . - . ID=gene-LLC55_RS10050;Name=LLC55_RS10050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10050;old_locus_tag=LLC55_10055 NZ_CP086200.1 Protein Homology CDS 2108949 2110451 . - 0 ID=cds-WP_011260314.1;Parent=gene-LLC55_RS10050;Dbxref=Genbank:WP_011260314.1;Name=WP_011260314.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346356.1;locus_tag=LLC55_RS10050;product=hybrid sensor histidine kinase/response regulator;protein_id=WP_011260314.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2110455 2110895 . - . ID=gene-LLC55_RS10055;Name=LLC55_RS10055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10055;old_locus_tag=LLC55_10060 NZ_CP086200.1 Protein Homology CDS 2110455 2110895 . - 0 ID=cds-WP_011260315.1;Parent=gene-LLC55_RS10055;Dbxref=Genbank:WP_011260315.1;Name=WP_011260315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804768.1;locus_tag=LLC55_RS10055;product=response regulator;protein_id=WP_011260315.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2110892 2112703 . - . ID=gene-LLC55_RS10060;Name=LLC55_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10060;old_locus_tag=LLC55_10065 NZ_CP086200.1 Protein Homology CDS 2110892 2112703 . - 0 ID=cds-WP_011409443.1;Parent=gene-LLC55_RS10060;Dbxref=Genbank:WP_011409443.1;Name=WP_011409443.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368210.1;locus_tag=LLC55_RS10060;product=ATP-binding protein;protein_id=WP_011409443.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2112989 2113360 . - . ID=gene-LLC55_RS10065;Name=LLC55_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10065;old_locus_tag=LLC55_10070 NZ_CP086200.1 Protein Homology CDS 2112989 2113360 . - 0 ID=cds-WP_011260317.1;Parent=gene-LLC55_RS10065;Dbxref=Genbank:WP_011260317.1;Name=WP_011260317.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113055.1;locus_tag=LLC55_RS10065;product=BON domain-containing protein;protein_id=WP_011260317.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2113511 2114563 . + . ID=gene-LLC55_RS10070;Name=LLC55_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10070;old_locus_tag=LLC55_10075 NZ_CP086200.1 Protein Homology CDS 2113511 2114563 . + 0 ID=cds-WP_011260318.1;Parent=gene-LLC55_RS10070;Dbxref=Genbank:WP_011260318.1;Name=WP_011260318.1;Ontology_term=GO:0000166;gbkey=CDS;go_function=nucleotide binding|0000166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368214.1;locus_tag=LLC55_RS10070;product=oxidoreductase;protein_id=WP_011260318.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2114903 2115844 . - . ID=gene-LLC55_RS10075;Name=gnd;gbkey=Gene;gene=gnd;gene_biotype=protein_coding;locus_tag=LLC55_RS10075;old_locus_tag=LLC55_10080 NZ_CP086200.1 Protein Homology CDS 2114903 2115844 . - 0 ID=cds-WP_069964758.1;Parent=gene-LLC55_RS10075;Dbxref=Genbank:WP_069964758.1;Name=WP_069964758.1;Ontology_term=GO:0006098,GO:0004616;gbkey=CDS;gene=gnd;go_function=phosphogluconate dehydrogenase (decarboxylating) activity|0004616||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990351.1;locus_tag=LLC55_RS10075;product=decarboxylating 6-phosphogluconate dehydrogenase;protein_id=WP_069964758.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2115865 2117202 . - . ID=gene-LLC55_RS10080;Name=LLC55_RS10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10080;old_locus_tag=LLC55_10085 NZ_CP086200.1 Protein Homology CDS 2115865 2117202 . - 0 ID=cds-WP_075239460.1;Parent=gene-LLC55_RS10080;Dbxref=Genbank:WP_075239460.1;Name=WP_075239460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368217.1;locus_tag=LLC55_RS10080;product=hypothetical protein;protein_id=WP_075239460.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2117374 2117754 . - . ID=gene-LLC55_RS10085;Name=LLC55_RS10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10085;old_locus_tag=LLC55_10090 NZ_CP086200.1 Protein Homology CDS 2117374 2117754 . - 0 ID=cds-WP_011409446.1;Parent=gene-LLC55_RS10085;Dbxref=Genbank:WP_011409446.1;Name=WP_011409446.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911143.1;locus_tag=LLC55_RS10085;product=glycine zipper 2TM domain-containing protein;protein_id=WP_011409446.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2117879 2118640 . - . ID=gene-LLC55_RS10090;Name=LLC55_RS10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10090;old_locus_tag=LLC55_10095 NZ_CP086200.1 Protein Homology CDS 2117879 2118640 . - 0 ID=cds-WP_012444115.1;Parent=gene-LLC55_RS10090;Dbxref=Genbank:WP_012444115.1;Name=WP_012444115.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155343.1;locus_tag=LLC55_RS10090;product=DUF2242 domain-containing protein;protein_id=WP_012444115.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2118715 2119769 . - . ID=gene-LLC55_RS10095;Name=LLC55_RS10095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10095;old_locus_tag=LLC55_10100;pseudo=true NZ_CP086200.1 Protein Homology CDS 2118715 2119769 . - 0 ID=cds-LLC55_RS10095;Parent=gene-LLC55_RS10095;Note=frameshifted%3B internal stop;Ontology_term=GO:0006306,GO:0003677,GO:0008170;gbkey=CDS;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;go_process=DNA methylation|0006306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089336.1;locus_tag=LLC55_RS10095;product=DNA methyltransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2119762 2120875 . - . ID=gene-LLC55_RS10100;Name=LLC55_RS10100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10100;old_locus_tag=LLC55_10105;pseudo=true NZ_CP086200.1 Protein Homology CDS 2119762 2120875 . - 0 ID=cds-LLC55_RS10100;Parent=gene-LLC55_RS10100;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162368.1;locus_tag=LLC55_RS10100;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2120898 2122301 . - . ID=gene-LLC55_RS10105;Name=LLC55_RS10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10105;old_locus_tag=LLC55_10110 NZ_CP086200.1 Protein Homology CDS 2120898 2122301 . - 0 ID=cds-WP_011409450.1;Parent=gene-LLC55_RS10105;Dbxref=Genbank:WP_011409450.1;Name=WP_011409450.1;Ontology_term=GO:0009435,GO:0004514;gbkey=CDS;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990339.1;locus_tag=LLC55_RS10105;product=nicotinate phosphoribosyltransferase;protein_id=WP_011409450.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2122424 2123479 . - . ID=gene-LLC55_RS10110;Name=LLC55_RS10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10110;old_locus_tag=LLC55_10115 NZ_CP086200.1 Protein Homology CDS 2122424 2123479 . - 0 ID=cds-WP_011260326.1;Parent=gene-LLC55_RS10110;Dbxref=Genbank:WP_011260326.1;Name=WP_011260326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303950.1;locus_tag=LLC55_RS10110;product=bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase;protein_id=WP_011260326.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2123547 2124266 . + . ID=gene-LLC55_RS10115;Name=LLC55_RS10115;end_range=2124266,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10115;old_locus_tag=LLC55_10120;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2123547 2124266 . + 0 ID=cds-LLC55_RS10115;Parent=gene-LLC55_RS10115;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2124266,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444111.1;locus_tag=LLC55_RS10115;partial=true;product=endonuclease/exonuclease/phosphatase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2124375 2125751 . + . ID=gene-LLC55_RS10120;Name=LLC55_RS10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10120;old_locus_tag=LLC55_10125 NZ_CP086200.1 Protein Homology CDS 2124375 2125751 . + 0 ID=cds-WP_069964507.1-5;Parent=gene-LLC55_RS10120;Dbxref=Genbank:WP_069964507.1;Name=WP_069964507.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS10120;product=IS5-like element ISXo4 family transposase;protein_id=WP_069964507.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2125774 2126025 . + . ID=gene-LLC55_RS10125;Name=LLC55_RS10125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10125;old_locus_tag=LLC55_10130;partial=true;pseudo=true;start_range=.,2125774 NZ_CP086200.1 Protein Homology CDS 2125774 2126025 . + 0 ID=cds-LLC55_RS10125;Parent=gene-LLC55_RS10125;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368226.1;locus_tag=LLC55_RS10125;partial=true;product=endonuclease;pseudo=true;start_range=.,2125774;transl_table=11 NZ_CP086200.1 RefSeq gene 2126317 2128476 . - . ID=gene-LLC55_RS10130;Name=LLC55_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10130;old_locus_tag=LLC55_10135 NZ_CP086200.1 Protein Homology CDS 2126317 2128476 . - 0 ID=cds-WP_171970776.1;Parent=gene-LLC55_RS10130;Dbxref=Genbank:WP_171970776.1;Name=WP_171970776.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155351.1;locus_tag=LLC55_RS10130;product=carboxy terminal-processing peptidase;protein_id=WP_171970776.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2128999 2130093 . - . ID=gene-LLC55_RS10135;Name=LLC55_RS10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10135;old_locus_tag=LLC55_10140 NZ_CP086200.1 Protein Homology CDS 2128999 2130093 . - 0 ID=cds-WP_011260329.1;Parent=gene-LLC55_RS10135;Dbxref=Genbank:WP_011260329.1;Name=WP_011260329.1;Ontology_term=GO:0009307,GO:0000287,GO:0003677,GO:0009036;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,DNA binding|0003677||IEA,type II site-specific deoxyribonuclease activity|0009036||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116034.1;locus_tag=LLC55_RS10135;product=BsuBI/PstI family type II restriction endonuclease;protein_id=WP_011260329.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2130090 2131901 . - . ID=gene-LLC55_RS10140;Name=LLC55_RS10140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10140;old_locus_tag=LLC55_10145 NZ_CP086200.1 Protein Homology CDS 2130090 2131901 . - 0 ID=cds-WP_041182275.1;Parent=gene-LLC55_RS10140;Dbxref=Genbank:WP_041182275.1;Name=WP_041182275.1;Ontology_term=GO:0006304,GO:0003677,GO:0003824;gbkey=CDS;go_function=DNA binding|0003677||IEA,catalytic activity|0003824||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154983.1;locus_tag=LLC55_RS10140;product=Eco57I restriction-modification methylase domain-containing protein;protein_id=WP_041182275.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2131996 2132145 . - . ID=gene-LLC55_RS10145;Name=LLC55_RS10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10145;old_locus_tag=LLC55_10150 NZ_CP086200.1 GeneMarkS-2+ CDS 2131996 2132145 . - 0 ID=cds-WP_155296183.1;Parent=gene-LLC55_RS10145;Dbxref=Genbank:WP_155296183.1;Name=WP_155296183.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS10145;product=hypothetical protein;protein_id=WP_155296183.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2132146 2133159 . - . ID=gene-LLC55_RS10150;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=LLC55_RS10150;old_locus_tag=LLC55_10155 NZ_CP086200.1 Protein Homology CDS 2132146 2133159 . - 0 ID=cds-WP_069964601.1;Parent=gene-LLC55_RS10150;Dbxref=Genbank:WP_069964601.1;Name=WP_069964601.1;Ontology_term=GO:0009107,GO:0016992,GO:0051539,GO:1904047;gbkey=CDS;gene=lipA;go_function=lipoate synthase activity|0016992||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=lipoate biosynthetic process|0009107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301161.1;locus_tag=LLC55_RS10150;product=lipoyl synthase;protein_id=WP_069964601.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2133174 2133872 . - . ID=gene-LLC55_RS10155;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=LLC55_RS10155;old_locus_tag=LLC55_10160 NZ_CP086200.1 Protein Homology CDS 2133174 2133872 . - 0 ID=cds-WP_069964602.1;Parent=gene-LLC55_RS10155;Dbxref=Genbank:WP_069964602.1;Name=WP_069964602.1;Ontology_term=GO:0009249,GO:0033819;gbkey=CDS;gene=lipB;go_function=lipoyl(octanoyl) transferase activity|0033819||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158468.1;locus_tag=LLC55_RS10155;product=lipoyl(octanoyl) transferase LipB;protein_id=WP_069964602.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2133860 2134138 . - . ID=gene-LLC55_RS10160;Name=LLC55_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10160;old_locus_tag=LLC55_10165 NZ_CP086200.1 Protein Homology CDS 2133860 2134138 . - 0 ID=cds-WP_011409453.1;Parent=gene-LLC55_RS10160;Dbxref=Genbank:WP_011409453.1;Name=WP_011409453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409453.1;locus_tag=LLC55_RS10160;product=YbeD family protein;protein_id=WP_011409453.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2134265 2134915 . - . ID=gene-LLC55_RS10165;Name=LLC55_RS10165;end_range=2134915,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10165;old_locus_tag=LLC55_10170;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2134265 2134915 . - 0 ID=cds-LLC55_RS10165;Parent=gene-LLC55_RS10165;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2134915,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089329.1;locus_tag=LLC55_RS10165;partial=true;product=peptidoglycan-binding protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2134871 2134990 . + . ID=gene-LLC55_RS10170;Name=LLC55_RS10170;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10170;old_locus_tag=LLC55_10175;partial=true;pseudo=true;start_range=.,2134871 NZ_CP086200.1 Protein Homology CDS 2134871 2134990 . + 0 ID=cds-LLC55_RS10170;Parent=gene-LLC55_RS10170;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159067.1;locus_tag=LLC55_RS10170;partial=true;product=DUF2219 domain-containing protein;pseudo=true;start_range=.,2134871;transl_table=11 NZ_CP086200.1 RefSeq gene 2135204 2136409 . - . ID=gene-LLC55_RS10175;Name=LLC55_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10175;old_locus_tag=LLC55_10180 NZ_CP086200.1 Protein Homology CDS 2135204 2136409 . - 0 ID=cds-WP_011260334.1;Parent=gene-LLC55_RS10175;Dbxref=Genbank:WP_011260334.1;Name=WP_011260334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115444.1;locus_tag=LLC55_RS10175;product=D-alanyl-D-alanine carboxypeptidase family protein;protein_id=WP_011260334.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2136910 2138325 . - . ID=gene-LLC55_RS10180;Name=LLC55_RS10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10180;old_locus_tag=LLC55_10185 NZ_CP086200.1 Protein Homology CDS 2136910 2138325 . - 0 ID=cds-WP_011260335.1;Parent=gene-LLC55_RS10180;Dbxref=Genbank:WP_011260335.1;Name=WP_011260335.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155355.1;locus_tag=LLC55_RS10180;product=septal ring lytic transglycosylase RlpA family protein;protein_id=WP_011260335.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2138322 2139461 . - . ID=gene-LLC55_RS10185;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=LLC55_RS10185;old_locus_tag=LLC55_10190 NZ_CP086200.1 Protein Homology CDS 2138322 2139461 . - 0 ID=cds-WP_011260336.1;Parent=gene-LLC55_RS10185;Dbxref=Genbank:WP_011260336.1;Name=WP_011260336.1;Ontology_term=GO:0009253,GO:0016757;gbkey=CDS;gene=mltB;go_function=glycosyltransferase activity|0016757||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118980.1;locus_tag=LLC55_RS10185;product=lytic murein transglycosylase B;protein_id=WP_011260336.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2139730 2140200 . - . ID=gene-LLC55_RS10190;Name=LLC55_RS10190;end_range=2140200,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10190;old_locus_tag=LLC55_10195;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2139730 2140200 . - 0 ID=cds-LLC55_RS10190;Parent=gene-LLC55_RS10190;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0005975,GO:0004650;end_range=2140200,.;gbkey=CDS;go_function=polygalacturonase activity|0004650||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346338.1;locus_tag=LLC55_RS10190;partial=true;product=glycosyl hydrolase family 28 protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2140092 2140382 . - . ID=gene-LLC55_RS10195;Name=LLC55_RS10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10195;old_locus_tag=LLC55_10200 NZ_CP086200.1 Protein Homology CDS 2140092 2140382 . - 0 ID=cds-WP_230455214.1;Parent=gene-LLC55_RS10195;Dbxref=Genbank:WP_230455214.1;Name=WP_230455214.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017739.2;locus_tag=LLC55_RS10195;product=contractile injection system protein%2C VgrG/Pvc8 family;protein_id=WP_230455214.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2140538 2141638 . - . ID=gene-LLC55_RS10200;Name=LLC55_RS10200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10200;old_locus_tag=LLC55_10205;pseudo=true NZ_CP086200.1 Protein Homology CDS 2140538 2141638 . - 0 ID=cds-LLC55_RS10200;Parent=gene-LLC55_RS10200;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS10200;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2141851 2142807 . + . ID=gene-LLC55_RS10205;Name=LLC55_RS10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10205;old_locus_tag=LLC55_10210 NZ_CP086200.1 Protein Homology CDS 2141851 2142807 . + 0 ID=cds-WP_069963899.1;Parent=gene-LLC55_RS10205;Dbxref=Genbank:WP_069963899.1;Name=WP_069963899.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS10205;product=IS30-like element IS1112a family transposase;protein_id=WP_069963899.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2142815 2143573 . - . ID=gene-LLC55_RS10210;Name=LLC55_RS10210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10210;old_locus_tag=LLC55_10215 NZ_CP086200.1 GeneMarkS-2+ CDS 2142815 2143573 . - 0 ID=cds-WP_143698369.1;Parent=gene-LLC55_RS10210;Dbxref=Genbank:WP_143698369.1;Name=WP_143698369.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS10210;product=hypothetical protein;protein_id=WP_143698369.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2143579 2145303 . - . ID=gene-LLC55_RS10215;Name=LLC55_RS10215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10215;old_locus_tag=LLC55_10220 NZ_CP086200.1 Protein Homology CDS 2143579 2145303 . - 0 ID=cds-WP_075239457.1;Parent=gene-LLC55_RS10215;Dbxref=Genbank:WP_075239457.1;Name=WP_075239457.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013630.2;locus_tag=LLC55_RS10215;product=LysM peptidoglycan-binding domain-containing protein;protein_id=WP_075239457.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2145300 2148077 . - . ID=gene-LLC55_RS10220;Name=LLC55_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10220;old_locus_tag=LLC55_10225 NZ_CP086200.1 Protein Homology CDS 2145300 2148077 . - 0 ID=cds-WP_080496439.1;Parent=gene-LLC55_RS10220;Dbxref=Genbank:WP_080496439.1;Name=WP_080496439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409209.1;locus_tag=LLC55_RS10220;product=type VI secretion system Vgr family protein;protein_id=WP_080496439.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2148163 2148749 . - . ID=gene-LLC55_RS10225;Name=LLC55_RS10225;end_range=2148749,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10225;old_locus_tag=LLC55_10230;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2148163 2148749 . - 0 ID=cds-LLC55_RS10225;Parent=gene-LLC55_RS10225;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2148749,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS10225;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2148839 2149957 . - . ID=gene-LLC55_RS10230;Name=rodA;gbkey=Gene;gene=rodA;gene_biotype=protein_coding;locus_tag=LLC55_RS10230;old_locus_tag=LLC55_10235 NZ_CP086200.1 Protein Homology CDS 2148839 2149957 . - 0 ID=cds-WP_011260340.1;Parent=gene-LLC55_RS10230;Dbxref=Genbank:WP_011260340.1;Name=WP_011260340.1;Ontology_term=GO:0008360;gbkey=CDS;gene=rodA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573354.1;locus_tag=LLC55_RS10230;product=rod shape-determining protein RodA;protein_id=WP_011260340.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2149954 2152014 . - . ID=gene-LLC55_RS10235;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=LLC55_RS10235;old_locus_tag=LLC55_10240 NZ_CP086200.1 Protein Homology CDS 2149954 2152014 . - 0 ID=cds-WP_011260341.1;Parent=gene-LLC55_RS10235;Dbxref=Genbank:WP_011260341.1;Name=WP_011260341.1;Ontology_term=GO:0009252,GO:0003824;gbkey=CDS;gene=mrdA;go_function=catalytic activity|0003824||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303045.1;locus_tag=LLC55_RS10235;product=penicillin-binding protein 2;protein_id=WP_011260341.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2152018 2152503 . - . ID=gene-LLC55_RS10240;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=LLC55_RS10240;old_locus_tag=LLC55_10245 NZ_CP086200.1 Protein Homology CDS 2152018 2152503 . - 0 ID=cds-WP_011409462.1;Parent=gene-LLC55_RS10240;Dbxref=Genbank:WP_011409462.1;Name=WP_011409462.1;Ontology_term=GO:0008360,GO:0003674;gbkey=CDS;gene=mreD;go_function=molecular_function|0003674||IEA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911183.1;locus_tag=LLC55_RS10240;product=rod shape-determining protein MreD;protein_id=WP_011409462.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2152500 2153906 . - . ID=gene-LLC55_RS10245;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=LLC55_RS10245;old_locus_tag=LLC55_10250 NZ_CP086200.1 Protein Homology CDS 2152500 2153906 . - 0 ID=cds-WP_228329723.1;Parent=gene-LLC55_RS10245;Dbxref=Genbank:WP_228329723.1;Name=WP_228329723.1;Ontology_term=GO:0008360;gbkey=CDS;gene=mreC;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112559.1;locus_tag=LLC55_RS10245;product=rod shape-determining protein MreC;protein_id=WP_228329723.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2154079 2155125 . - . ID=gene-LLC55_RS10250;Name=LLC55_RS10250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10250;old_locus_tag=LLC55_10255 NZ_CP086200.1 Protein Homology CDS 2154079 2155125 . - 0 ID=cds-WP_012444096.1;Parent=gene-LLC55_RS10250;Dbxref=Genbank:WP_012444096.1;Name=WP_012444096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000913396.1;locus_tag=LLC55_RS10250;product=rod shape-determining protein;protein_id=WP_012444096.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2155402 2156334 . + . ID=gene-LLC55_RS10255;Name=LLC55_RS10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10255;old_locus_tag=LLC55_10260 NZ_CP086200.1 Protein Homology CDS 2155402 2156334 . + 0 ID=cds-WP_011260344.1;Parent=gene-LLC55_RS10255;Dbxref=Genbank:WP_011260344.1;Name=WP_011260344.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038567.1;locus_tag=LLC55_RS10255;product=carbohydrate kinase family protein;protein_id=WP_011260344.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2156446 2157058 . - . ID=gene-LLC55_RS10260;Name=LLC55_RS10260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10260;old_locus_tag=LLC55_10265;pseudo=true NZ_CP086200.1 Protein Homology CDS 2156446 2157058 . - 0 ID=cds-LLC55_RS10260;Parent=gene-LLC55_RS10260;Note=frameshifted%3B internal stop;Ontology_term=GO:0008152,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472603.1;locus_tag=LLC55_RS10260;product=HAD-IA family hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2157145 2157495 . - . ID=gene-LLC55_RS10265;Name=LLC55_RS10265;end_range=2157495,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10265;old_locus_tag=LLC55_10270;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2157145 2157495 . - 0 ID=cds-LLC55_RS10265;Parent=gene-LLC55_RS10265;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2157495,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS10265;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2157528 2157983 . - . ID=gene-LLC55_RS10270;Name=LLC55_RS10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10270;old_locus_tag=LLC55_10275 NZ_CP086200.1 Protein Homology CDS 2157528 2157983 . - 0 ID=cds-WP_069960002.1;Parent=gene-LLC55_RS10270;Dbxref=Genbank:WP_069960002.1;Name=WP_069960002.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346314.1;locus_tag=LLC55_RS10270;product=nucleoside deaminase;protein_id=WP_069960002.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2157980 2158480 . - . ID=gene-LLC55_RS10275;Name=LLC55_RS10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10275;old_locus_tag=LLC55_10280 NZ_CP086200.1 Protein Homology CDS 2157980 2158480 . - 0 ID=cds-WP_069960003.1;Parent=gene-LLC55_RS10275;Dbxref=Genbank:WP_069960003.1;Name=WP_069960003.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159113.1;locus_tag=LLC55_RS10275;product=GNAT family N-acetyltransferase;protein_id=WP_069960003.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2158581 2159581 . - . ID=gene-LLC55_RS10280;Name=LLC55_RS10280;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10280;old_locus_tag=LLC55_10285;pseudo=true NZ_CP086200.1 Protein Homology CDS 2158581 2159581 . - 0 ID=cds-LLC55_RS10280;Parent=gene-LLC55_RS10280;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011000070.1;locus_tag=LLC55_RS10280;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2159731 2160807 . - . ID=gene-LLC55_RS10285;Name=LLC55_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10285;old_locus_tag=LLC55_10290 NZ_CP086200.1 Protein Homology CDS 2159731 2160807 . - 0 ID=cds-WP_069960004.1;Parent=gene-LLC55_RS10285;Dbxref=Genbank:WP_069960004.1;Name=WP_069960004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482758.1;locus_tag=LLC55_RS10285;product=HlyD family secretion protein;protein_id=WP_069960004.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2160804 2162516 . - . ID=gene-LLC55_RS10290;Name=LLC55_RS10290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10290;old_locus_tag=LLC55_10295;pseudo=true NZ_CP086200.1 Protein Homology CDS 2160804 2162516 . - 0 ID=cds-LLC55_RS10290;Parent=gene-LLC55_RS10290;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038582.1;locus_tag=LLC55_RS10290;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2162546 2163307 . + . ID=gene-LLC55_RS10295;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=LLC55_RS10295;old_locus_tag=LLC55_10300 NZ_CP086200.1 Protein Homology CDS 2162546 2163307 . + 0 ID=cds-WP_011409470.1;Parent=gene-LLC55_RS10295;Dbxref=Genbank:WP_011409470.1;Name=WP_011409470.1;Ontology_term=GO:0008168;gbkey=CDS;gene=ubiE;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303204.1;locus_tag=LLC55_RS10295;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase UbiE;protein_id=WP_011409470.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2163480 2164370 . + . ID=gene-LLC55_RS10300;Name=LLC55_RS10300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10300;old_locus_tag=LLC55_10305 NZ_CP086200.1 Protein Homology CDS 2163480 2164370 . + 0 ID=cds-WP_011409471.1;Parent=gene-LLC55_RS10300;Dbxref=Genbank:WP_011409471.1;Name=WP_011409471.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302598.1;locus_tag=LLC55_RS10300;product=GGDEF domain-containing protein;protein_id=WP_011409471.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2164492 2166504 . + . ID=gene-LLC55_RS10305;Name=LLC55_RS10305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10305;old_locus_tag=LLC55_10310 NZ_CP086200.1 Protein Homology CDS 2164492 2166504 . + 0 ID=cds-WP_011409472.1;Parent=gene-LLC55_RS10305;Dbxref=Genbank:WP_011409472.1;Name=WP_011409472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162760.1;locus_tag=LLC55_RS10305;product=M1 family metallopeptidase;protein_id=WP_011409472.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2166676 2167395 . + . ID=gene-LLC55_RS10310;Name=LLC55_RS10310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10310;old_locus_tag=LLC55_10315 NZ_CP086200.1 Protein Homology CDS 2166676 2167395 . + 0 ID=cds-WP_011409473.1;Parent=gene-LLC55_RS10310;Dbxref=Genbank:WP_011409473.1;Name=WP_011409473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804719.1;locus_tag=LLC55_RS10310;product=hypothetical protein;protein_id=WP_011409473.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2167704 2168318 . + . ID=gene-LLC55_RS10315;Name=LLC55_RS10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10315;old_locus_tag=LLC55_10320 NZ_CP086200.1 Protein Homology CDS 2167704 2168318 . + 0 ID=cds-WP_041182583.1;Parent=gene-LLC55_RS10315;Dbxref=Genbank:WP_041182583.1;Name=WP_041182583.1;Ontology_term=GO:0008152,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577294.1;locus_tag=LLC55_RS10315;product=HAD-IA family hydrolase;protein_id=WP_041182583.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2168492 2169859 . - . ID=gene-LLC55_RS10320;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=LLC55_RS10320;old_locus_tag=LLC55_10325 NZ_CP086200.1 Protein Homology CDS 2168492 2169859 . - 0 ID=cds-WP_011260359.1;Parent=gene-LLC55_RS10320;Dbxref=Genbank:WP_011260359.1;Name=WP_011260359.1;Ontology_term=GO:0005524,GO:0008233,GO:0016887;gbkey=CDS;gene=hslU;go_function=ATP binding|0005524||IEA,peptidase activity|0008233||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804707.1;locus_tag=LLC55_RS10320;product=ATP-dependent protease ATPase subunit HslU;protein_id=WP_011260359.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2169970 2170521 . - . ID=gene-LLC55_RS10325;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=LLC55_RS10325;old_locus_tag=LLC55_10330 NZ_CP086200.1 Protein Homology CDS 2169970 2170521 . - 0 ID=cds-WP_011260360.1;Parent=gene-LLC55_RS10325;Dbxref=Genbank:WP_011260360.1;Name=WP_011260360.1;Ontology_term=GO:0051603,GO:0004298;gbkey=CDS;gene=hslV;go_function=threonine-type endopeptidase activity|0004298||IEA;go_process=proteolysis involved in protein catabolic process|0051603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260360.1;locus_tag=LLC55_RS10325;product=ATP-dependent protease subunit HslV;protein_id=WP_011260360.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2170679 2170755 . - . ID=gene-LLC55_RS10330;Name=LLC55_RS10330;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS10330;old_locus_tag=LLC55_10335 NZ_CP086200.1 cmsearch ncRNA 2170679 2170755 . - . ID=rna-LLC55_RS10330;Parent=gene-LLC55_RS10330;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10330;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2170679 2170755 . - . ID=exon-LLC55_RS10330-1;Parent=rna-LLC55_RS10330;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10330;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2171037 2171954 . - . ID=gene-LLC55_RS10335;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=LLC55_RS10335;old_locus_tag=LLC55_10340 NZ_CP086200.1 Protein Homology CDS 2171037 2171954 . - 0 ID=cds-WP_011409475.1;Parent=gene-LLC55_RS10335;Dbxref=Genbank:WP_011409475.1;Name=WP_011409475.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerC;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173863.1;locus_tag=LLC55_RS10335;product=tyrosine recombinase XerC;protein_id=WP_011409475.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2172154 2172825 . - . ID=gene-LLC55_RS10340;Name=LLC55_RS10340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10340;old_locus_tag=LLC55_10345 NZ_CP086200.1 Protein Homology CDS 2172154 2172825 . - 0 ID=cds-WP_011409476.1;Parent=gene-LLC55_RS10340;Dbxref=Genbank:WP_011409476.1;Name=WP_011409476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482765.1;locus_tag=LLC55_RS10340;product=DUF484 family protein;protein_id=WP_011409476.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2172822 2173676 . - . ID=gene-LLC55_RS10345;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=LLC55_RS10345;old_locus_tag=LLC55_10350 NZ_CP086200.1 Protein Homology CDS 2172822 2173676 . - 0 ID=cds-WP_011260363.1;Parent=gene-LLC55_RS10345;Dbxref=Genbank:WP_011260363.1;Name=WP_011260363.1;Ontology_term=GO:0009089,GO:0008837;gbkey=CDS;gene=dapF;go_function=diaminopimelate epimerase activity|0008837||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260363.1;locus_tag=LLC55_RS10345;product=diaminopimelate epimerase;protein_id=WP_011260363.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2173666 2173902 . - . ID=gene-LLC55_RS10350;Name=LLC55_RS10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10350;old_locus_tag=LLC55_10355 NZ_CP086200.1 Protein Homology CDS 2173666 2173902 . - 0 ID=cds-WP_011409477.1;Parent=gene-LLC55_RS10350;Dbxref=Genbank:WP_011409477.1;Name=WP_011409477.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155427.1;locus_tag=LLC55_RS10350;product=lipoprotein;protein_id=WP_011409477.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2173960 2174358 . - . ID=gene-LLC55_RS10355;Name=LLC55_RS10355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10355;old_locus_tag=LLC55_10360 NZ_CP086200.1 Protein Homology CDS 2173960 2174358 . - 0 ID=cds-WP_011409478.1;Parent=gene-LLC55_RS10355;Dbxref=Genbank:WP_011409478.1;Name=WP_011409478.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965023.1;locus_tag=LLC55_RS10355;product=YbaN family protein;protein_id=WP_011409478.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2174731 2176866 . - . ID=gene-LLC55_RS10360;Name=LLC55_RS10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10360;old_locus_tag=LLC55_10365 NZ_CP086200.1 Protein Homology CDS 2174731 2176866 . - 0 ID=cds-WP_027703683.1;Parent=gene-LLC55_RS10360;Dbxref=Genbank:WP_027703683.1;Name=WP_027703683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501853.1;locus_tag=LLC55_RS10360;product=oligopeptidase B;protein_id=WP_027703683.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2176990 2178174 . + . ID=gene-LLC55_RS10365;Name=LLC55_RS10365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10365;old_locus_tag=LLC55_10370 NZ_CP086200.1 Protein Homology CDS 2176990 2178174 . + 0 ID=cds-WP_075242329.1;Parent=gene-LLC55_RS10365;Dbxref=Genbank:WP_075242329.1;Name=WP_075242329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155429.1;locus_tag=LLC55_RS10365;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_075242329.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2178448 2178508 . - . ID=gene-LLC55_RS10370;Name=LLC55_RS10370;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS10370;old_locus_tag=LLC55_10375 NZ_CP086200.1 cmsearch ncRNA 2178448 2178508 . - . ID=rna-LLC55_RS10370;Parent=gene-LLC55_RS10370;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10370;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2178448 2178508 . - . ID=exon-LLC55_RS10370-1;Parent=rna-LLC55_RS10370;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10370;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2178500 2178940 . - . ID=gene-LLC55_RS10375;Name=LLC55_RS10375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10375;old_locus_tag=LLC55_10380 NZ_CP086200.1 GeneMarkS-2+ CDS 2178500 2178940 . - 0 ID=cds-WP_103073476.1;Parent=gene-LLC55_RS10375;Dbxref=Genbank:WP_103073476.1;Name=WP_103073476.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS10375;product=hypothetical protein;protein_id=WP_103073476.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2179014 2181107 . - . ID=gene-LLC55_RS10380;Name=LLC55_RS10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10380;old_locus_tag=LLC55_10385 NZ_CP086200.1 Protein Homology CDS 2179014 2181107 . - 0 ID=cds-WP_011409481.1;Parent=gene-LLC55_RS10380;Dbxref=Genbank:WP_011409481.1;Name=WP_011409481.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903637.1;locus_tag=LLC55_RS10380;product=prolyl oligopeptidase family serine peptidase;protein_id=WP_011409481.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2181175 2181486 . - . ID=gene-LLC55_RS10385;Name=LLC55_RS10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10385;old_locus_tag=LLC55_10390 NZ_CP086200.1 Protein Homology CDS 2181175 2181486 . - 0 ID=cds-WP_011409482.1;Parent=gene-LLC55_RS10385;Dbxref=Genbank:WP_011409482.1;Name=WP_011409482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368301.1;locus_tag=LLC55_RS10385;product=hypothetical protein;protein_id=WP_011409482.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2181874 2182443 . + . ID=gene-LLC55_RS10390;Name=LLC55_RS10390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10390;old_locus_tag=LLC55_10395 NZ_CP086200.1 Protein Homology CDS 2181874 2182443 . + 0 ID=cds-WP_011260370.1;Parent=gene-LLC55_RS10390;Dbxref=Genbank:WP_011260370.1;Name=WP_011260370.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368302.1;locus_tag=LLC55_RS10390;product=lipocalin family protein;protein_id=WP_011260370.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2182552 2183517 . - . ID=gene-LLC55_RS10395;Name=LLC55_RS10395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10395;old_locus_tag=LLC55_10400 NZ_CP086200.1 Protein Homology CDS 2182552 2183517 . - 0 ID=cds-WP_011260371.1;Parent=gene-LLC55_RS10395;Dbxref=Genbank:WP_011260371.1;Name=WP_011260371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451607.1;locus_tag=LLC55_RS10395;product=YafY family protein;protein_id=WP_011260371.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2184076 2184876 . + . ID=gene-LLC55_RS10400;Name=LLC55_RS10400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10400;old_locus_tag=LLC55_10405 NZ_CP086200.1 Protein Homology CDS 2184076 2184876 . + 0 ID=cds-WP_011260372.1;Parent=gene-LLC55_RS10400;Dbxref=Genbank:WP_011260372.1;Name=WP_011260372.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302001.1;locus_tag=LLC55_RS10400;product=DUF481 domain-containing protein;protein_id=WP_011260372.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2185427 2186341 . - . ID=gene-LLC55_RS10405;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=LLC55_RS10405;old_locus_tag=LLC55_10410 NZ_CP086200.1 Protein Homology CDS 2185427 2186341 . - 0 ID=cds-WP_011409484.1;Parent=gene-LLC55_RS10405;Dbxref=Genbank:WP_011409484.1;Name=WP_011409484.1;Ontology_term=GO:0006779,GO:0004418,GO:0005737;gbkey=CDS;gene=hemC;go_component=cytoplasm|0005737||IEA;go_function=hydroxymethylbilane synthase activity|0004418||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155437.1;locus_tag=LLC55_RS10405;product=hydroxymethylbilane synthase;protein_id=WP_011409484.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2186372 2187109 . - . ID=gene-LLC55_RS10410;Name=LLC55_RS10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10410;old_locus_tag=LLC55_10415 NZ_CP086200.1 Protein Homology CDS 2186372 2187109 . - 0 ID=cds-WP_011409485.1;Parent=gene-LLC55_RS10410;Dbxref=Genbank:WP_011409485.1;Name=WP_011409485.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915517.1;locus_tag=LLC55_RS10410;product=LytTR family DNA-binding domain-containing protein;protein_id=WP_011409485.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2187140 2188192 . - . ID=gene-LLC55_RS10415;Name=LLC55_RS10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10415;old_locus_tag=LLC55_10420 NZ_CP086200.1 Protein Homology CDS 2187140 2188192 . - 0 ID=cds-WP_011260375.1;Parent=gene-LLC55_RS10415;Dbxref=Genbank:WP_011260375.1;Name=WP_011260375.1;Ontology_term=GO:0000160,GO:0000155,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409486.1;locus_tag=LLC55_RS10415;product=histidine kinase;protein_id=WP_011260375.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2188197 2188865 . - . ID=gene-LLC55_RS10420;Name=LLC55_RS10420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10420;old_locus_tag=LLC55_10425 NZ_CP086200.1 Protein Homology CDS 2188197 2188865 . - 0 ID=cds-WP_044756406.1;Parent=gene-LLC55_RS10420;Dbxref=Genbank:WP_044756406.1;Name=WP_044756406.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050437.1;locus_tag=LLC55_RS10420;product=alpha/beta hydrolase;protein_id=WP_044756406.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2189017 2190954 . - . ID=gene-LLC55_RS10425;Name=mdoH;gbkey=Gene;gene=mdoH;gene_biotype=protein_coding;locus_tag=LLC55_RS10425;old_locus_tag=LLC55_10430 NZ_CP086200.1 Protein Homology CDS 2189017 2190954 . - 0 ID=cds-WP_033013308.1;Parent=gene-LLC55_RS10425;Dbxref=Genbank:WP_033013308.1;Name=WP_033013308.1;gbkey=CDS;gene=mdoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915513.1;locus_tag=LLC55_RS10425;product=glucans biosynthesis glucosyltransferase MdoH;protein_id=WP_033013308.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2191426 2191502 . - . ID=gene-LLC55_RS10430;Name=LLC55_RS10430;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS10430;old_locus_tag=LLC55_10435 NZ_CP086200.1 cmsearch ncRNA 2191426 2191502 . - . ID=rna-LLC55_RS10430;Parent=gene-LLC55_RS10430;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10430;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2191426 2191502 . - . ID=exon-LLC55_RS10430-1;Parent=rna-LLC55_RS10430;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10430;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2191681 2192444 . + . ID=gene-LLC55_RS10435;Name=LLC55_RS10435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10435;old_locus_tag=LLC55_10440 NZ_CP086200.1 Protein Homology CDS 2191681 2191996 . + 0 ID=cds-WP_094187780.1;Parent=gene-LLC55_RS10435;Dbxref=Genbank:WP_094187780.1;Name=WP_094187780.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS10435;product=IS5 family transposase;protein_id=WP_094187780.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2191996 2192444 . + 2 ID=cds-WP_094187780.1;Parent=gene-LLC55_RS10435;Dbxref=Genbank:WP_094187780.1;Name=WP_094187780.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS10435;product=IS5 family transposase;protein_id=WP_094187780.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2192758 2194407 . - . ID=gene-LLC55_RS10440;Name=LLC55_RS10440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10440;old_locus_tag=LLC55_10445 NZ_CP086200.1 Protein Homology CDS 2192758 2194407 . - 0 ID=cds-WP_011260378.1;Parent=gene-LLC55_RS10440;Dbxref=Genbank:WP_011260378.1;Name=WP_011260378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489719.1;locus_tag=LLC55_RS10440;product=M28 family metallopeptidase;protein_id=WP_011260378.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2194576 2195555 . - . ID=gene-LLC55_RS10445;Name=LLC55_RS10445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10445;old_locus_tag=LLC55_10450;pseudo=true NZ_CP086200.1 Protein Homology CDS 2194576 2195555 . - 0 ID=cds-LLC55_RS10445;Parent=gene-LLC55_RS10445;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462838.1;locus_tag=LLC55_RS10445;product=GGDEF domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2195798 2197285 . - . ID=gene-LLC55_RS10450;Name=LLC55_RS10450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10450;old_locus_tag=LLC55_10455 NZ_CP086200.1 Protein Homology CDS 2195798 2197285 . - 0 ID=cds-WP_011409489.1;Parent=gene-LLC55_RS10450;Dbxref=Genbank:WP_011409489.1;Name=WP_011409489.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116599.1;locus_tag=LLC55_RS10450;product=SulP family inorganic anion transporter;protein_id=WP_011409489.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2197493 2198947 . + . ID=gene-LLC55_RS10455;Name=LLC55_RS10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10455;old_locus_tag=LLC55_10460 NZ_CP086200.1 Protein Homology CDS 2197493 2198947 . + 0 ID=cds-WP_069963930.1;Parent=gene-LLC55_RS10455;Dbxref=Genbank:WP_069963930.1;Name=WP_069963930.1;Ontology_term=GO:0071704,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=organic substance metabolic process|0071704||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409490.1;locus_tag=LLC55_RS10455;product=glycoside hydrolase family 5 protein;protein_id=WP_069963930.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2199283 2199656 . + . ID=gene-LLC55_RS10460;Name=LLC55_RS10460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10460;old_locus_tag=LLC55_10465;partial=true;pseudo=true;start_range=.,2199283 NZ_CP086200.1 Protein Homology CDS 2199283 2199656 . + 0 ID=cds-LLC55_RS10460;Parent=gene-LLC55_RS10460;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472611.1;locus_tag=LLC55_RS10460;partial=true;product=methyl-accepting chemotaxis protein;pseudo=true;start_range=.,2199283;transl_table=11 NZ_CP086200.1 RefSeq gene 2199661 2199737 . - . ID=gene-LLC55_RS10465;Name=LLC55_RS10465;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS10465;old_locus_tag=LLC55_10470 NZ_CP086200.1 cmsearch ncRNA 2199661 2199737 . - . ID=rna-LLC55_RS10465;Parent=gene-LLC55_RS10465;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10465;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2199661 2199737 . - . ID=exon-LLC55_RS10465-1;Parent=rna-LLC55_RS10465;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10465;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2200182 2202806 . - . ID=gene-LLC55_RS10470;Name=LLC55_RS10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10470;old_locus_tag=LLC55_10475 NZ_CP086200.1 Protein Homology CDS 2200182 2202806 . - 0 ID=cds-WP_069964603.1;Parent=gene-LLC55_RS10470;Dbxref=Genbank:WP_069964603.1;Name=WP_069964603.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409492.1;locus_tag=LLC55_RS10470;product=PAS domain S-box protein;protein_id=WP_069964603.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2203063 2205933 . + . ID=gene-LLC55_RS10475;Name=LLC55_RS10475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10475;old_locus_tag=LLC55_10480 NZ_CP086200.1 Protein Homology CDS 2203063 2205933 . + 0 ID=cds-WP_011260383.1;Parent=gene-LLC55_RS10475;Dbxref=Genbank:WP_011260383.1;Name=WP_011260383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260383.1;locus_tag=LLC55_RS10475;product=pitrilysin family protein;protein_id=WP_011260383.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2206481 2207410 . + . ID=gene-LLC55_RS10480;Name=LLC55_RS10480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10480;old_locus_tag=LLC55_10485 NZ_CP086200.1 Protein Homology CDS 2206481 2207410 . + 0 ID=cds-WP_069960007.1;Parent=gene-LLC55_RS10480;Dbxref=Genbank:WP_069960007.1;Name=WP_069960007.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118451.1;locus_tag=LLC55_RS10480;product=GAF domain-containing protein;protein_id=WP_069960007.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2207449 2208453 . - . ID=gene-LLC55_RS10485;Name=LLC55_RS10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10485;old_locus_tag=LLC55_10490 NZ_CP086200.1 Protein Homology CDS 2207449 2208453 . - 0 ID=cds-WP_069960008.1;Parent=gene-LLC55_RS10485;Dbxref=Genbank:WP_069960008.1;Name=WP_069960008.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376082.1;locus_tag=LLC55_RS10485;product=hypothetical protein;protein_id=WP_069960008.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2208706 2209469 . - . ID=gene-LLC55_RS10490;Name=LLC55_RS10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10490;old_locus_tag=LLC55_10495 NZ_CP086200.1 Protein Homology CDS 2209154 2209469 . - 0 ID=cds-WP_109181887.1;Parent=gene-LLC55_RS10490;Dbxref=Genbank:WP_109181887.1;Name=WP_109181887.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS10490;product=IS5 family transposase;protein_id=WP_109181887.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2208706 2209154 . - 2 ID=cds-WP_109181887.1;Parent=gene-LLC55_RS10490;Dbxref=Genbank:WP_109181887.1;Name=WP_109181887.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS10490;product=IS5 family transposase;protein_id=WP_109181887.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2209665 2210417 . - . ID=gene-LLC55_RS10495;Name=LLC55_RS10495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10495;old_locus_tag=LLC55_10500;pseudo=true NZ_CP086200.1 Protein Homology CDS 2209665 2210417 . - 0 ID=cds-LLC55_RS10495;Parent=gene-LLC55_RS10495;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160053.1;locus_tag=LLC55_RS10495;product=endonuclease;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2210517 2211302 . + . ID=gene-LLC55_RS10500;Name=LLC55_RS10500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10500;old_locus_tag=LLC55_10505 NZ_CP086200.1 Protein Homology CDS 2210517 2211302 . + 0 ID=cds-WP_027704042.1;Parent=gene-LLC55_RS10500;Dbxref=Genbank:WP_027704042.1;Name=WP_027704042.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902976.1;locus_tag=LLC55_RS10500;product=DUF72 domain-containing protein;protein_id=WP_027704042.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2211556 2213229 . + . ID=gene-LLC55_RS10505;Name=treA;gbkey=Gene;gene=treA;gene_biotype=protein_coding;locus_tag=LLC55_RS10505;old_locus_tag=LLC55_10510 NZ_CP086200.1 Protein Homology CDS 2211556 2213229 . + 0 ID=cds-WP_011260388.1;Parent=gene-LLC55_RS10505;Dbxref=Genbank:WP_011260388.1;Name=WP_011260388.1;gbkey=CDS;gene=treA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167145.1;locus_tag=LLC55_RS10505;product=alpha%2Calpha-trehalase TreA;protein_id=WP_011260388.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2213773 2214219 . - . ID=gene-LLC55_RS10510;Name=LLC55_RS10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10510;old_locus_tag=LLC55_10515 NZ_CP086200.1 Protein Homology CDS 2213773 2214219 . - 0 ID=cds-WP_011409497.1;Parent=gene-LLC55_RS10510;Dbxref=Genbank:WP_011409497.1;Name=WP_011409497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158413.1;locus_tag=LLC55_RS10510;product=avidin/streptavidin family protein;protein_id=WP_011409497.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2214550 2214834 . + . ID=gene-LLC55_RS10515;Name=LLC55_RS10515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10515;old_locus_tag=LLC55_10520 NZ_CP086200.1 Protein Homology CDS 2214550 2214834 . + 0 ID=cds-WP_012444053.1;Parent=gene-LLC55_RS10515;Dbxref=Genbank:WP_012444053.1;Name=WP_012444053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444053.1;locus_tag=LLC55_RS10515;product=hypothetical protein;protein_id=WP_012444053.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2214953 2215225 . + . ID=gene-LLC55_RS10520;Name=LLC55_RS10520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10520;old_locus_tag=LLC55_10525;partial=true;pseudo=true;start_range=.,2214953 NZ_CP086200.1 Protein Homology CDS 2214953 2215225 . + 0 ID=cds-LLC55_RS10520;Parent=gene-LLC55_RS10520;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448601.1;locus_tag=LLC55_RS10520;partial=true;product=AIM24 family protein;pseudo=true;start_range=.,2214953;transl_table=11 NZ_CP086200.1 RefSeq gene 2215429 2216340 . - . ID=gene-LLC55_RS10525;Name=LLC55_RS10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10525;old_locus_tag=LLC55_10530 NZ_CP086200.1 Protein Homology CDS 2215429 2216340 . - 0 ID=cds-WP_027703841.1;Parent=gene-LLC55_RS10525;Dbxref=Genbank:WP_027703841.1;Name=WP_027703841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501814.1;locus_tag=LLC55_RS10525;product=magnesium transporter;protein_id=WP_027703841.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2216586 2217581 . + . ID=gene-LLC55_RS10530;Name=LLC55_RS10530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10530;old_locus_tag=LLC55_10535 NZ_CP086200.1 Protein Homology CDS 2216586 2217581 . + 0 ID=cds-WP_027703842.1;Parent=gene-LLC55_RS10530;Dbxref=Genbank:WP_027703842.1;Name=WP_027703842.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155501.1;locus_tag=LLC55_RS10530;product=XopV/AopV family type III secretion system effector;protein_id=WP_027703842.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2217675 2219105 . - . ID=gene-LLC55_RS10535;Name=cycA;gbkey=Gene;gene=cycA;gene_biotype=protein_coding;gene_synonym=dagA;locus_tag=LLC55_RS10535;old_locus_tag=LLC55_10540 NZ_CP086200.1 Protein Homology CDS 2217675 2219105 . - 0 ID=cds-WP_173425348.1;Parent=gene-LLC55_RS10535;Dbxref=Genbank:WP_173425348.1;Name=WP_173425348.1;Ontology_term=GO:0006865,GO:0055085,GO:0016020;gbkey=CDS;gene=cycA;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167467.1;locus_tag=LLC55_RS10535;product=D-serine/D-alanine/glycine transporter;protein_id=WP_173425348.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2219727 2220061 . - . ID=gene-LLC55_RS10540;Name=LLC55_RS10540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10540;old_locus_tag=LLC55_10545;pseudo=true NZ_CP086200.1 Protein Homology CDS 2219727 2220061 . - 0 ID=cds-LLC55_RS10540;Parent=gene-LLC55_RS10540;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155503.1;locus_tag=LLC55_RS10540;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2220272 2221918 . + . ID=gene-LLC55_RS10545;Name=LLC55_RS10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10545;old_locus_tag=LLC55_10550 NZ_CP086200.1 Protein Homology CDS 2220272 2221918 . + 0 ID=cds-WP_162828859.1;Parent=gene-LLC55_RS10545;Dbxref=Genbank:WP_162828859.1;Name=WP_162828859.1;Ontology_term=GO:0030245,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=cellulose catabolic process|0030245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444046.1;locus_tag=LLC55_RS10545;product=glycoside hydrolase family 6 protein;protein_id=WP_162828859.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2222327 2224099 . + . ID=gene-LLC55_RS10550;Name=LLC55_RS10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10550;old_locus_tag=LLC55_10555 NZ_CP086200.1 Protein Homology CDS 2222327 2224099 . + 0 ID=cds-WP_075242248.1;Parent=gene-LLC55_RS10550;Dbxref=Genbank:WP_075242248.1;Name=WP_075242248.1;Ontology_term=GO:0030248;gbkey=CDS;go_function=cellulose binding|0030248||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501805.1;locus_tag=LLC55_RS10550;product=expansin EXLX1 family cellulose-binding protein;protein_id=WP_075242248.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2224375 2225250 . - . ID=gene-LLC55_RS10555;Name=LLC55_RS10555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10555;old_locus_tag=LLC55_10560 NZ_CP086200.1 Protein Homology CDS 2224375 2225250 . - 0 ID=cds-WP_011409500.1;Parent=gene-LLC55_RS10555;Dbxref=Genbank:WP_011409500.1;Name=WP_011409500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159126.1;locus_tag=LLC55_RS10555;product=DMT family transporter;protein_id=WP_011409500.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2225418 2226326 . + . ID=gene-LLC55_RS10560;Name=LLC55_RS10560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10560;old_locus_tag=LLC55_10565 NZ_CP086200.1 Protein Homology CDS 2225418 2226326 . + 0 ID=cds-WP_228329724.1;Parent=gene-LLC55_RS10560;Dbxref=Genbank:WP_228329724.1;Name=WP_228329724.1;Ontology_term=GO:0016645;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-NH group of donors|0016645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966052.1;locus_tag=LLC55_RS10560;product=MnmC family methyltransferase;protein_id=WP_228329724.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2226418 2227020 . + . ID=gene-LLC55_RS10565;Name=LLC55_RS10565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10565;old_locus_tag=LLC55_10570 NZ_CP086200.1 Protein Homology CDS 2226418 2227020 . + 0 ID=cds-WP_011260397.1;Parent=gene-LLC55_RS10565;Dbxref=Genbank:WP_011260397.1;Name=WP_011260397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448615.1;locus_tag=LLC55_RS10565;product=hypothetical protein;protein_id=WP_011260397.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2226969 2227990 . + . ID=gene-LLC55_RS10570;Name=LLC55_RS10570;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10570;old_locus_tag=LLC55_10575;pseudo=true NZ_CP086200.1 Protein Homology CDS 2226969 2227990 . + 0 ID=cds-LLC55_RS10570;Parent=gene-LLC55_RS10570;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011000070.1;locus_tag=LLC55_RS10570;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2228366 2229457 . + . ID=gene-LLC55_RS10575;Name=LLC55_RS10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10575;old_locus_tag=LLC55_10580 NZ_CP086200.1 Protein Homology CDS 2228366 2229457 . + 0 ID=cds-WP_075242247.1;Parent=gene-LLC55_RS10575;Dbxref=Genbank:WP_075242247.1;Name=WP_075242247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915468.1;locus_tag=LLC55_RS10575;product=DUF1615 domain-containing protein;protein_id=WP_075242247.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2229508 2230940 . - . ID=gene-LLC55_RS10580;Name=LLC55_RS10580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10580;old_locus_tag=LLC55_10585;pseudo=true NZ_CP086200.1 Protein Homology CDS 2229508 2230940 . - 0 ID=cds-LLC55_RS10580;Parent=gene-LLC55_RS10580;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155515.1;locus_tag=LLC55_RS10580;product=GAD-like domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2231360 2233684 . + . ID=gene-LLC55_RS10585;Name=LLC55_RS10585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10585;old_locus_tag=LLC55_10590 NZ_CP086200.1 Protein Homology CDS 2231360 2233684 . + 0 ID=cds-WP_011409507.1;Parent=gene-LLC55_RS10585;Dbxref=Genbank:WP_011409507.1;Name=WP_011409507.1;Ontology_term=GO:0006508;gbkey=CDS;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158410.1;locus_tag=LLC55_RS10585;product=S9 family peptidase;protein_id=WP_011409507.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2233754 2233820 . - . ID=gene-LLC55_RS10590;Name=LLC55_RS10590;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS10590;old_locus_tag=LLC55_10595 NZ_CP086200.1 cmsearch ncRNA 2233754 2233820 . - . ID=rna-LLC55_RS10590;Parent=gene-LLC55_RS10590;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10590;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2233754 2233820 . - . ID=exon-LLC55_RS10590-1;Parent=rna-LLC55_RS10590;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10590;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2233880 2235826 . - . ID=gene-LLC55_RS10595;Name=LLC55_RS10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10595;old_locus_tag=LLC55_10600 NZ_CP086200.1 Protein Homology CDS 2233880 2235826 . - 0 ID=cds-WP_069960011.1;Parent=gene-LLC55_RS10595;Dbxref=Genbank:WP_069960011.1;Name=WP_069960011.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409508.1;locus_tag=LLC55_RS10595;product=S9 family peptidase;protein_id=WP_069960011.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2236016 2236189 . + . ID=gene-LLC55_RS10600;Name=LLC55_RS10600;end_range=2236189,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10600;old_locus_tag=LLC55_10605;partial=true;pseudo=true;start_range=.,2236016 NZ_CP086200.1 Protein Homology CDS 2236016 2236189 . + 0 ID=cds-LLC55_RS10600;Parent=gene-LLC55_RS10600;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2236189,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804395.1;locus_tag=LLC55_RS10600;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,2236016;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2236186 2236392 . + . ID=gene-LLC55_RS10605;Name=LLC55_RS10605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10605;old_locus_tag=LLC55_10610;partial=true;pseudo=true;start_range=.,2236186 NZ_CP086200.1 Protein Homology CDS 2236186 2236392 . + 0 ID=cds-LLC55_RS10605;Parent=gene-LLC55_RS10605;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972686.1;locus_tag=LLC55_RS10605;partial=true;product=DUF4126 domain-containing protein;pseudo=true;start_range=.,2236186;transl_table=11 NZ_CP086200.1 RefSeq gene 2236468 2236543 . + . ID=gene-LLC55_RS10610;Name=LLC55_RS10610;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS10610;old_locus_tag=LLC55_10615 NZ_CP086200.1 cmsearch ncRNA 2236468 2236543 . + . ID=rna-LLC55_RS10610;Parent=gene-LLC55_RS10610;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10610;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2236468 2236543 . + . ID=exon-LLC55_RS10610-1;Parent=rna-LLC55_RS10610;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10610;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2236783 2238366 . + . ID=gene-LLC55_RS10615;Name=LLC55_RS10615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10615;old_locus_tag=LLC55_10620 NZ_CP086200.1 Protein Homology CDS 2236783 2238366 . + 0 ID=cds-WP_011260404.1;Parent=gene-LLC55_RS10615;Dbxref=Genbank:WP_011260404.1;Name=WP_011260404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923743.1;locus_tag=LLC55_RS10615;product=SDR family oxidoreductase;protein_id=WP_011260404.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2238714 2239301 . - . ID=gene-LLC55_RS10620;Name=LLC55_RS10620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10620;old_locus_tag=LLC55_10625 NZ_CP086200.1 Protein Homology CDS 2238714 2239301 . - 0 ID=cds-WP_228329747.1;Parent=gene-LLC55_RS10620;Dbxref=Genbank:WP_228329747.1;Name=WP_228329747.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114900.1;locus_tag=LLC55_RS10620;product=hypothetical protein;protein_id=WP_228329747.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2239509 2240550 . - . ID=gene-LLC55_RS10625;Name=LLC55_RS10625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10625;old_locus_tag=LLC55_10630;pseudo=true NZ_CP086200.1 Protein Homology CDS 2239509 2240550 . - 0 ID=cds-LLC55_RS10625;Parent=gene-LLC55_RS10625;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS10625;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2240659 2241567 . - . ID=gene-LLC55_RS10630;Name=LLC55_RS10630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10630;old_locus_tag=LLC55_10635 NZ_CP086200.1 Protein Homology CDS 2240659 2241567 . - 0 ID=cds-WP_075240638.1;Parent=gene-LLC55_RS10630;Dbxref=Genbank:WP_075240638.1;Name=WP_075240638.1;Ontology_term=GO:0006520,GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409513.1;locus_tag=LLC55_RS10630;product=beta-eliminating lyase-related protein;protein_id=WP_075240638.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2241542 2243017 . - . ID=gene-LLC55_RS10635;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;locus_tag=LLC55_RS10635;old_locus_tag=LLC55_10640 NZ_CP086200.1 Protein Homology CDS 2241542 2243017 . - 0 ID=cds-WP_011409514.1;Parent=gene-LLC55_RS10635;Dbxref=Genbank:WP_011409514.1;Name=WP_011409514.1;Ontology_term=GO:0000162,GO:0004049;gbkey=CDS;gene=trpE;go_function=anthranilate synthase activity|0004049||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575582.1;locus_tag=LLC55_RS10635;product=anthranilate synthase component I;protein_id=WP_011409514.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2243685 2244614 . - . ID=gene-LLC55_RS10640;Name=yegS;gbkey=Gene;gene=yegS;gene_biotype=protein_coding;locus_tag=LLC55_RS10640;old_locus_tag=LLC55_10645 NZ_CP086200.1 Protein Homology CDS 2243685 2244614 . - 0 ID=cds-WP_011260408.1;Parent=gene-LLC55_RS10640;Dbxref=Genbank:WP_011260408.1;Name=WP_011260408.1;Ontology_term=GO:0008150,GO:0001727,GO:0005575;gbkey=CDS;gene=yegS;go_component=cellular_component|0005575||IEA;go_function=lipid kinase activity|0001727||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260408.1;locus_tag=LLC55_RS10640;product=lipid kinase YegS;protein_id=WP_011260408.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2244849 2245340 . - . ID=gene-LLC55_RS10645;Name=LLC55_RS10645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10645;old_locus_tag=LLC55_10650 NZ_CP086200.1 Protein Homology CDS 2244849 2245340 . - 0 ID=cds-WP_011260409.1;Parent=gene-LLC55_RS10645;Dbxref=Genbank:WP_011260409.1;Name=WP_011260409.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368051.1;locus_tag=LLC55_RS10645;product=GNAT family N-acetyltransferase;protein_id=WP_011260409.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2245337 2246038 . - . ID=gene-LLC55_RS10650;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=LLC55_RS10650;old_locus_tag=LLC55_10655 NZ_CP086200.1 Protein Homology CDS 2245337 2246038 . - 0 ID=cds-WP_011409515.1;Parent=gene-LLC55_RS10650;Dbxref=Genbank:WP_011409515.1;Name=WP_011409515.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164154.1;locus_tag=LLC55_RS10650;product=ribulose-phosphate 3-epimerase;protein_id=WP_011409515.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2246403 2246732 . - . ID=gene-LLC55_RS10655;Name=LLC55_RS10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10655;old_locus_tag=LLC55_10660 NZ_CP086200.1 Protein Homology CDS 2246403 2246732 . - 0 ID=cds-WP_011409516.1;Parent=gene-LLC55_RS10655;Dbxref=Genbank:WP_011409516.1;Name=WP_011409516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157937.1;locus_tag=LLC55_RS10655;product=DnaJ domain-containing protein;protein_id=WP_011409516.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2246941 2247867 . + . ID=gene-LLC55_RS10660;Name=LLC55_RS10660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10660;old_locus_tag=LLC55_10665 NZ_CP086200.1 Protein Homology CDS 2246941 2247867 . + 0 ID=cds-WP_012444032.1;Parent=gene-LLC55_RS10660;Dbxref=Genbank:WP_012444032.1;Name=WP_012444032.1;Ontology_term=GO:0006164,GO:0004639;gbkey=CDS;go_function=phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|0004639||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448471.1;locus_tag=LLC55_RS10660;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_012444032.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2248341 2249018 . + . ID=gene-LLC55_RS10665;Name=LLC55_RS10665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10665;old_locus_tag=LLC55_10670 NZ_CP086200.1 Protein Homology CDS 2248341 2249018 . + 0 ID=cds-WP_044757306.1;Parent=gene-LLC55_RS10665;Dbxref=Genbank:WP_044757306.1;Name=WP_044757306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113468.1;locus_tag=LLC55_RS10665;product=NYN domain-containing protein;protein_id=WP_044757306.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2249030 2249413 . + . ID=gene-LLC55_RS10670;Name=LLC55_RS10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10670;old_locus_tag=LLC55_10675 NZ_CP086200.1 GeneMarkS-2+ CDS 2249030 2249413 . + 0 ID=cds-WP_011409517.1;Parent=gene-LLC55_RS10670;Dbxref=Genbank:WP_011409517.1;Name=WP_011409517.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS10670;product=hypothetical protein;protein_id=WP_011409517.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2249842 2251394 . + . ID=gene-LLC55_RS10675;Name=LLC55_RS10675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10675;old_locus_tag=LLC55_10680;pseudo=true NZ_CP086200.1 Protein Homology CDS 2249842 2251394 . + 0 ID=cds-LLC55_RS10675;Parent=gene-LLC55_RS10675;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967835.1;locus_tag=LLC55_RS10675;product=M4 family metallopeptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2251536 2252021 . + . ID=gene-LLC55_RS10680;Name=LLC55_RS10680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10680;old_locus_tag=LLC55_10685 NZ_CP086200.1 Protein Homology CDS 2251536 2252021 . + 0 ID=cds-WP_011409520.1;Parent=gene-LLC55_RS10680;Dbxref=Genbank:WP_011409520.1;Name=WP_011409520.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575562.1;locus_tag=LLC55_RS10680;product=DUF962 domain-containing protein;protein_id=WP_011409520.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2252560 2255388 . + . ID=gene-LLC55_RS10685;Name=LLC55_RS10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10685;old_locus_tag=LLC55_10690 NZ_CP086200.1 Protein Homology CDS 2252560 2255388 . + 0 ID=cds-WP_011409522.1;Parent=gene-LLC55_RS10685;Dbxref=Genbank:WP_011409522.1;Name=WP_011409522.1;Ontology_term=GO:0098662,GO:0005451;gbkey=CDS;go_function=monovalent cation:proton antiporter activity|0005451||IEA;go_process=inorganic cation transmembrane transport|0098662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302198.1;locus_tag=LLC55_RS10685;product=monovalent cation/H+ antiporter subunit A;protein_id=WP_011409522.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2255388 2255762 . + . ID=gene-LLC55_RS10690;Name=LLC55_RS10690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10690;old_locus_tag=LLC55_10695 NZ_CP086200.1 Protein Homology CDS 2255388 2255762 . + 0 ID=cds-WP_011409523.1;Parent=gene-LLC55_RS10690;Dbxref=Genbank:WP_011409523.1;Name=WP_011409523.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346152.1;locus_tag=LLC55_RS10690;product=Na+/H+ antiporter subunit C;protein_id=WP_011409523.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2255759 2257303 . + . ID=gene-LLC55_RS10695;Name=LLC55_RS10695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10695;old_locus_tag=LLC55_10700 NZ_CP086200.1 Protein Homology CDS 2255759 2257303 . + 0 ID=cds-WP_069960013.1;Parent=gene-LLC55_RS10695;Dbxref=Genbank:WP_069960013.1;Name=WP_069960013.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161271.1;locus_tag=LLC55_RS10695;product=monovalent cation/H+ antiporter subunit D;protein_id=WP_069960013.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2257300 2257806 . + . ID=gene-LLC55_RS10700;Name=LLC55_RS10700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10700;old_locus_tag=LLC55_10705 NZ_CP086200.1 Protein Homology CDS 2257300 2257806 . + 0 ID=cds-WP_044756383.1;Parent=gene-LLC55_RS10700;Dbxref=Genbank:WP_044756383.1;Name=WP_044756383.1;Ontology_term=GO:0006812,GO:0008324,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=cation transmembrane transporter activity|0008324||IEA;go_process=cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967828.1;locus_tag=LLC55_RS10700;product=Na+/H+ antiporter subunit E;protein_id=WP_044756383.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2257803 2258087 . + . ID=gene-LLC55_RS10705;Name=LLC55_RS10705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10705;old_locus_tag=LLC55_10710 NZ_CP086200.1 Protein Homology CDS 2257803 2258087 . + 0 ID=cds-WP_011260421.1;Parent=gene-LLC55_RS10705;Dbxref=Genbank:WP_011260421.1;Name=WP_011260421.1;Ontology_term=GO:0034220,GO:0015075;gbkey=CDS;go_function=ion transmembrane transporter activity|0015075||IEA;go_process=ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501684.1;locus_tag=LLC55_RS10705;product=K+/H+ antiporter subunit F;protein_id=WP_011260421.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2258084 2258437 . + . ID=gene-LLC55_RS10710;Name=LLC55_RS10710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10710;old_locus_tag=LLC55_10715 NZ_CP086200.1 Protein Homology CDS 2258084 2258437 . + 0 ID=cds-WP_011260422.1;Parent=gene-LLC55_RS10710;Dbxref=Genbank:WP_011260422.1;Name=WP_011260422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302193.1;locus_tag=LLC55_RS10710;product=Na+/H+ antiporter subunit G;protein_id=WP_011260422.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2258777 2259223 . + . ID=gene-LLC55_RS10715;Name=LLC55_RS10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10715;old_locus_tag=LLC55_10720 NZ_CP086200.1 GeneMarkS-2+ CDS 2258777 2259223 . + 0 ID=cds-WP_228329725.1;Parent=gene-LLC55_RS10715;Dbxref=Genbank:WP_228329725.1;Name=WP_228329725.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS10715;product=hypothetical protein;protein_id=WP_228329725.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2259407 2260375 . + . ID=gene-LLC55_RS10720;Name=LLC55_RS10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10720;old_locus_tag=LLC55_10725 NZ_CP086200.1 Protein Homology CDS 2259407 2260375 . + 0 ID=cds-WP_011258802.1-8;Parent=gene-LLC55_RS10720;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS10720;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2260807 2262132 . - . ID=gene-LLC55_RS10725;Name=hmgA;gbkey=Gene;gene=hmgA;gene_biotype=protein_coding;locus_tag=LLC55_RS10725;old_locus_tag=LLC55_10730 NZ_CP086200.1 Protein Homology CDS 2260807 2262132 . - 0 ID=cds-WP_011409528.1;Parent=gene-LLC55_RS10725;Dbxref=Genbank:WP_011409528.1;Name=WP_011409528.1;Ontology_term=GO:0006559,GO:0006572,GO:0004411;gbkey=CDS;gene=hmgA;go_function=homogentisate 1%2C2-dioxygenase activity|0004411||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA,tyrosine catabolic process|0006572||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501682.1;locus_tag=LLC55_RS10725;product=homogentisate 1%2C2-dioxygenase;protein_id=WP_011409528.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2262497 2263612 . - . ID=gene-LLC55_RS10730;Name=hppD;gbkey=Gene;gene=hppD;gene_biotype=protein_coding;locus_tag=LLC55_RS10730;old_locus_tag=LLC55_10735 NZ_CP086200.1 Protein Homology CDS 2262497 2263612 . - 0 ID=cds-WP_012444023.1;Parent=gene-LLC55_RS10730;Dbxref=Genbank:WP_012444023.1;Name=WP_012444023.1;Ontology_term=GO:0006559,GO:0006572,GO:0003868;gbkey=CDS;gene=hppD;go_function=4-hydroxyphenylpyruvate dioxygenase activity|0003868||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA,tyrosine catabolic process|0006572||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112910.1;locus_tag=LLC55_RS10730;product=4-hydroxyphenylpyruvate dioxygenase;protein_id=WP_012444023.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2263738 2264226 . + . ID=gene-LLC55_RS10735;Name=LLC55_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10735;old_locus_tag=LLC55_10740 NZ_CP086200.1 Protein Homology CDS 2263738 2264226 . + 0 ID=cds-WP_011260425.1;Parent=gene-LLC55_RS10735;Dbxref=Genbank:WP_011260425.1;Name=WP_011260425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035688.1;locus_tag=LLC55_RS10735;product=MarR family transcriptional regulator;protein_id=WP_011260425.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2264583 2265173 . - . ID=gene-LLC55_RS10740;Name=LLC55_RS10740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10740;old_locus_tag=LLC55_10745 NZ_CP086200.1 Protein Homology CDS 2264583 2265173 . - 0 ID=cds-WP_011409530.1;Parent=gene-LLC55_RS10740;Dbxref=Genbank:WP_011409530.1;Name=WP_011409530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931590.1;locus_tag=LLC55_RS10740;product=thioredoxin family protein;protein_id=WP_011409530.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2265185 2266693 . - . ID=gene-LLC55_RS10745;Name=LLC55_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10745;old_locus_tag=LLC55_10750 NZ_CP086200.1 Protein Homology CDS 2265185 2266693 . - 0 ID=cds-WP_044756377.1;Parent=gene-LLC55_RS10745;Dbxref=Genbank:WP_044756377.1;Name=WP_044756377.1;Ontology_term=GO:0015833,GO:0015333,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=peptide:proton symporter activity|0015333||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509241.1;locus_tag=LLC55_RS10745;product=oligopeptide:H+ symporter;protein_id=WP_044756377.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2267136 2268029 . - . ID=gene-LLC55_RS10750;Name=LLC55_RS10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10750;old_locus_tag=LLC55_10755 NZ_CP086200.1 Protein Homology CDS 2267136 2268029 . - 0 ID=cds-WP_011260428.1;Parent=gene-LLC55_RS10750;Dbxref=Genbank:WP_011260428.1;Name=WP_011260428.1;Ontology_term=GO:0019441,GO:0004833,GO:0020037;gbkey=CDS;go_function=tryptophan 2%2C3-dioxygenase activity|0004833||IEA,heme binding|0020037||IEA;go_process=tryptophan catabolic process to kynurenine|0019441||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301448.1;locus_tag=LLC55_RS10750;product=tryptophan 2%2C3-dioxygenase family protein;protein_id=WP_011260428.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2268435 2269375 . + . ID=gene-LLC55_RS10755;Name=LLC55_RS10755;end_range=2269375,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10755;old_locus_tag=LLC55_10760;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2268435 2269375 . + 0 ID=cds-LLC55_RS10755;Parent=gene-LLC55_RS10755;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2269375,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575533.1;locus_tag=LLC55_RS10755;partial=true;product=lamin tail domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2269348 2270067 . + . ID=gene-LLC55_RS10760;Name=LLC55_RS10760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10760;old_locus_tag=LLC55_10765;partial=true;pseudo=true;start_range=.,2269348 NZ_CP086200.1 Protein Homology CDS 2269348 2270067 . + 0 ID=cds-LLC55_RS10760;Parent=gene-LLC55_RS10760;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016624;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor|0016624||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850583.1;locus_tag=LLC55_RS10760;partial=true;product=thiamine pyrophosphate-dependent enzyme;pseudo=true;start_range=.,2269348;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2270060 2270611 . + . ID=gene-LLC55_RS10765;Name=LLC55_RS10765;end_range=2270611,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10765;old_locus_tag=LLC55_10770;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2270060 2270611 . + 0 ID=cds-LLC55_RS10765;Parent=gene-LLC55_RS10765;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2270611,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367996.1;locus_tag=LLC55_RS10765;partial=true;product=alpha-ketoacid dehydrogenase subunit beta;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2270700 2271665 . + . ID=gene-LLC55_RS10770;Name=LLC55_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10770;old_locus_tag=LLC55_10775 NZ_CP086200.1 Protein Homology CDS 2270700 2271665 . + 0 ID=cds-WP_228329726.1;Parent=gene-LLC55_RS10770;Dbxref=Genbank:WP_228329726.1;Name=WP_228329726.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS10770;product=IS1595-like element ISXo5 family transposase;protein_id=WP_228329726.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2271672 2272196 . + . ID=gene-LLC55_RS10775;Name=LLC55_RS10775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10775;old_locus_tag=LLC55_10780;partial=true;pseudo=true;start_range=.,2271672 NZ_CP086200.1 Protein Homology CDS 2271672 2272196 . + 0 ID=cds-LLC55_RS10775;Parent=gene-LLC55_RS10775;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367996.1;locus_tag=LLC55_RS10775;partial=true;product=alpha-ketoacid dehydrogenase subunit beta;pseudo=true;start_range=.,2271672;transl_table=11 NZ_CP086200.1 RefSeq gene 2272198 2272578 . + . ID=gene-LLC55_RS10780;Name=LLC55_RS10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10780;old_locus_tag=LLC55_10785 NZ_CP086200.1 Protein Homology CDS 2272198 2272578 . + 0 ID=cds-WP_011260435.1;Parent=gene-LLC55_RS10780;Dbxref=Genbank:WP_011260435.1;Name=WP_011260435.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260435.1;locus_tag=LLC55_RS10780;product=SH3 domain-containing protein;protein_id=WP_011260435.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2272583 2272692 . - . ID=gene-LLC55_RS10785;Name=LLC55_RS10785;end_range=2272692,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10785;old_locus_tag=LLC55_10790;partial=true;pseudo=true;start_range=.,2272583 NZ_CP086200.1 Protein Homology CDS 2272583 2272692 . - 0 ID=cds-LLC55_RS10785;Parent=gene-LLC55_RS10785;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2272692,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558069.1;locus_tag=LLC55_RS10785;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,2272583;transl_table=11 NZ_CP086200.1 RefSeq gene 2272739 2273502 . - . ID=gene-LLC55_RS10790;Name=LLC55_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10790;old_locus_tag=LLC55_10795 NZ_CP086200.1 Protein Homology CDS 2273187 2273502 . - 0 ID=cds-WP_094187715.1-4;Parent=gene-LLC55_RS10790;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS10790;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2272739 2273187 . - 2 ID=cds-WP_094187715.1-4;Parent=gene-LLC55_RS10790;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS10790;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2273597 2274481 . - . ID=gene-LLC55_RS10795;Name=LLC55_RS10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10795;old_locus_tag=LLC55_10800 NZ_CP086200.1 Protein Homology CDS 2273597 2274481 . - 0 ID=cds-WP_041182290.1;Parent=gene-LLC55_RS10795;Dbxref=Genbank:WP_041182290.1;Name=WP_041182290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992724.1;locus_tag=LLC55_RS10795;product=hypothetical protein;protein_id=WP_041182290.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2274571 2275866 . + . ID=gene-LLC55_RS10800;Name=LLC55_RS10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10800;old_locus_tag=LLC55_10805 NZ_CP086200.1 Protein Homology CDS 2274571 2275866 . + 0 ID=cds-WP_011260437.1;Parent=gene-LLC55_RS10800;Dbxref=Genbank:WP_011260437.1;Name=WP_011260437.1;Ontology_term=GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260437.1;locus_tag=LLC55_RS10800;product=acetyl-CoA C-acetyltransferase;protein_id=WP_011260437.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2275982 2276506 . + . ID=gene-LLC55_RS10805;Name=LLC55_RS10805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10805;old_locus_tag=LLC55_10810 NZ_CP086200.1 Protein Homology CDS 2275982 2276506 . + 0 ID=cds-WP_069960017.1;Parent=gene-LLC55_RS10805;Dbxref=Genbank:WP_069960017.1;Name=WP_069960017.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117625.1;locus_tag=LLC55_RS10805;product=hypothetical protein;protein_id=WP_069960017.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2276932 2278197 . - . ID=gene-LLC55_RS10810;Name=LLC55_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10810;old_locus_tag=LLC55_10815 NZ_CP086200.1 Protein Homology CDS 2276932 2278197 . - 0 ID=cds-WP_011260439.1;Parent=gene-LLC55_RS10810;Dbxref=Genbank:WP_011260439.1;Name=WP_011260439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112149.1;locus_tag=LLC55_RS10810;product=porphyrin biosynthesis protein;protein_id=WP_011260439.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2278194 2279171 . - . ID=gene-LLC55_RS10815;Name=LLC55_RS10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10815;old_locus_tag=LLC55_10820 NZ_CP086200.1 Protein Homology CDS 2278194 2279171 . - 0 ID=cds-WP_011409539.1;Parent=gene-LLC55_RS10815;Dbxref=Genbank:WP_011409539.1;Name=WP_011409539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488502.1;locus_tag=LLC55_RS10815;product=uroporphyrinogen-III C-methyltransferase;protein_id=WP_011409539.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2279275 2280051 . - . ID=gene-LLC55_RS10820;Name=LLC55_RS10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10820;old_locus_tag=LLC55_10825 NZ_CP086200.1 Protein Homology CDS 2279275 2280051 . - 0 ID=cds-WP_229001895.1;Parent=gene-LLC55_RS10820;Dbxref=Genbank:WP_229001895.1;Name=WP_229001895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488504.1;locus_tag=LLC55_RS10820;product=uroporphyrinogen-III synthase;protein_id=WP_229001895.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2280254 2281063 . + . ID=gene-LLC55_RS10825;Name=LLC55_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10825;old_locus_tag=LLC55_10830 NZ_CP086200.1 Protein Homology CDS 2280254 2281063 . + 0 ID=cds-WP_011260442.1;Parent=gene-LLC55_RS10825;Dbxref=Genbank:WP_011260442.1;Name=WP_011260442.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089004.1;locus_tag=LLC55_RS10825;product=glycosyltransferase family 25 protein;protein_id=WP_011260442.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2281071 2281869 . - . ID=gene-LLC55_RS10830;Name=LLC55_RS10830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10830;old_locus_tag=LLC55_10835 NZ_CP086200.1 Protein Homology CDS 2281598 2281869 . - 0 ID=cds-WP_109182023.1;Parent=gene-LLC55_RS10830;Dbxref=Genbank:WP_109182023.1;Name=WP_109182023.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS10830;product=IS5 family transposase;protein_id=WP_109182023.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2281071 2281599 . - 1 ID=cds-WP_109182023.1;Parent=gene-LLC55_RS10830;Dbxref=Genbank:WP_109182023.1;Name=WP_109182023.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS10830;product=IS5 family transposase;protein_id=WP_109182023.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2281912 2282529 . - . ID=gene-LLC55_RS10835;Name=LLC55_RS10835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10835;old_locus_tag=LLC55_10840 NZ_CP086200.1 Protein Homology CDS 2281912 2282529 . - 0 ID=cds-WP_042465763.1;Parent=gene-LLC55_RS10835;Dbxref=Genbank:WP_042465763.1;Name=WP_042465763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112508.1;locus_tag=LLC55_RS10835;product=hypothetical protein;protein_id=WP_042465763.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2282654 2283229 . - . ID=gene-LLC55_RS10840;Name=LLC55_RS10840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10840;old_locus_tag=LLC55_10845 NZ_CP086200.1 Protein Homology CDS 2282654 2283229 . - 0 ID=cds-WP_011409543.1;Parent=gene-LLC55_RS10840;Dbxref=Genbank:WP_011409543.1;Name=WP_011409543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157015.1;locus_tag=LLC55_RS10840;product=hypothetical protein;protein_id=WP_011409543.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2283441 2284760 . + . ID=gene-LLC55_RS10845;Name=LLC55_RS10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10845;old_locus_tag=LLC55_10850 NZ_CP086200.1 Protein Homology CDS 2283441 2284760 . + 0 ID=cds-WP_228329727.1;Parent=gene-LLC55_RS10845;Dbxref=Genbank:WP_228329727.1;Name=WP_228329727.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS10845;product=IS701 family transposase;protein_id=WP_228329727.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2284910 2285878 . + . ID=gene-LLC55_RS10850;Name=LLC55_RS10850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10850;old_locus_tag=LLC55_10855 NZ_CP086200.1 Protein Homology CDS 2284910 2285878 . + 0 ID=cds-WP_113233848.1;Parent=gene-LLC55_RS10850;Dbxref=Genbank:WP_113233848.1;Name=WP_113233848.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS10850;product=IS5-like element ISXo1 family transposase;protein_id=WP_113233848.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2286004 2286756 . - . ID=gene-LLC55_RS10855;Name=LLC55_RS10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10855;old_locus_tag=LLC55_10860 NZ_CP086200.1 Protein Homology CDS 2286004 2286756 . - 0 ID=cds-WP_011260446.1;Parent=gene-LLC55_RS10855;Dbxref=Genbank:WP_011260446.1;Name=WP_011260446.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038877.1;locus_tag=LLC55_RS10855;product=HAD family hydrolase;protein_id=WP_011260446.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2286794 2287201 . - . ID=gene-LLC55_RS10860;Name=LLC55_RS10860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10860;old_locus_tag=LLC55_10865 NZ_CP086200.1 Protein Homology CDS 2286794 2287201 . - 0 ID=cds-WP_024712457.1;Parent=gene-LLC55_RS10860;Dbxref=Genbank:WP_024712457.1;Name=WP_024712457.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157013.1;locus_tag=LLC55_RS10860;product=EF-hand domain-containing protein;protein_id=WP_024712457.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2287441 2287782 . - . ID=gene-LLC55_RS10865;Name=LLC55_RS10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10865;old_locus_tag=LLC55_10870 NZ_CP086200.1 Protein Homology CDS 2287441 2287782 . - 0 ID=cds-WP_011409547.1;Parent=gene-LLC55_RS10865;Dbxref=Genbank:WP_011409547.1;Name=WP_011409547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157012.1;locus_tag=LLC55_RS10865;product=hypothetical protein;protein_id=WP_011409547.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2288008 2288385 . - . ID=gene-LLC55_RS10870;Name=LLC55_RS10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10870;old_locus_tag=LLC55_10875 NZ_CP086200.1 Protein Homology CDS 2288008 2288385 . - 0 ID=cds-WP_011260449.1;Parent=gene-LLC55_RS10870;Dbxref=Genbank:WP_011260449.1;Name=WP_011260449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911463.1;locus_tag=LLC55_RS10870;product=hypothetical protein;protein_id=WP_011260449.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2288596 2288793 . - . ID=gene-LLC55_RS10875;Name=LLC55_RS10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10875;old_locus_tag=LLC55_10880 NZ_CP086200.1 Protein Homology CDS 2288596 2288793 . - 0 ID=cds-WP_011260450.1;Parent=gene-LLC55_RS10875;Dbxref=Genbank:WP_011260450.1;Name=WP_011260450.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903162.1;locus_tag=LLC55_RS10875;product=CPXCG motif-containing cysteine-rich protein;protein_id=WP_011260450.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2289100 2289846 . - . ID=gene-LLC55_RS10880;Name=LLC55_RS10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10880;old_locus_tag=LLC55_10885 NZ_CP086200.1 Protein Homology CDS 2289100 2289846 . - 0 ID=cds-WP_069960019.1;Parent=gene-LLC55_RS10880;Dbxref=Genbank:WP_069960019.1;Name=WP_069960019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973544.1;locus_tag=LLC55_RS10880;product=M15 family metallopeptidase;protein_id=WP_069960019.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2289939 2290745 . - . ID=gene-LLC55_RS10885;Name=LLC55_RS10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10885;old_locus_tag=LLC55_10890 NZ_CP086200.1 Protein Homology CDS 2289939 2290745 . - 0 ID=cds-WP_075242331.1;Parent=gene-LLC55_RS10885;Dbxref=Genbank:WP_075242331.1;Name=WP_075242331.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850303.1;locus_tag=LLC55_RS10885;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_075242331.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2290969 2292381 . + . ID=gene-LLC55_RS10890;Name=LLC55_RS10890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10890;old_locus_tag=LLC55_10895 NZ_CP086200.1 Protein Homology CDS 2290969 2292381 . + 0 ID=cds-WP_012444005.1;Parent=gene-LLC55_RS10890;Dbxref=Genbank:WP_012444005.1;Name=WP_012444005.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501731.1;locus_tag=LLC55_RS10890;product=SH3 domain-containing protein;protein_id=WP_012444005.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2292378 2293475 . + . ID=gene-LLC55_RS10895;Name=LLC55_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10895;old_locus_tag=LLC55_10900 NZ_CP086200.1 Protein Homology CDS 2292378 2293475 . + 0 ID=cds-WP_027703925.1;Parent=gene-LLC55_RS10895;Dbxref=Genbank:WP_027703925.1;Name=WP_027703925.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005987897.1;locus_tag=LLC55_RS10895;product=dipeptide epimerase;protein_id=WP_027703925.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2293480 2293556 . - . ID=gene-LLC55_RS10900;Name=LLC55_RS10900;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS10900;old_locus_tag=LLC55_10905 NZ_CP086200.1 cmsearch ncRNA 2293480 2293556 . - . ID=rna-LLC55_RS10900;Parent=gene-LLC55_RS10900;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10900;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2293480 2293556 . - . ID=exon-LLC55_RS10900-1;Parent=rna-LLC55_RS10900;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10900;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2293630 2294428 . - . ID=gene-LLC55_RS10905;Name=LLC55_RS10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10905;old_locus_tag=LLC55_10910 NZ_CP086200.1 Protein Homology CDS 2294157 2294428 . - 0 ID=cds-WP_094187763.1-2;Parent=gene-LLC55_RS10905;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS10905;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2293630 2294158 . - 1 ID=cds-WP_094187763.1-2;Parent=gene-LLC55_RS10905;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS10905;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2294482 2295280 . - . ID=gene-LLC55_RS10910;Name=LLC55_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10910;old_locus_tag=LLC55_10915 NZ_CP086200.1 Protein Homology CDS 2295009 2295280 . - 0 ID=cds-WP_099051302.1;Parent=gene-LLC55_RS10910;Dbxref=Genbank:WP_099051302.1;Name=WP_099051302.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS10910;product=IS5 family transposase;protein_id=WP_099051302.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2294482 2295010 . - 1 ID=cds-WP_099051302.1;Parent=gene-LLC55_RS10910;Dbxref=Genbank:WP_099051302.1;Name=WP_099051302.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS10910;product=IS5 family transposase;protein_id=WP_099051302.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2295500 2296462 . + . ID=gene-LLC55_RS10915;Name=LLC55_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10915;old_locus_tag=LLC55_10920 NZ_CP086200.1 Protein Homology CDS 2295500 2296462 . + 0 ID=cds-WP_011409552.1;Parent=gene-LLC55_RS10915;Dbxref=Genbank:WP_011409552.1;Name=WP_011409552.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182294.1;locus_tag=LLC55_RS10915;product=IS1595-like element ISXo2 family transposase;protein_id=WP_011409552.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2296910 2297673 . - . ID=gene-LLC55_RS10920;Name=LLC55_RS10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10920;old_locus_tag=LLC55_10925 NZ_CP086200.1 Protein Homology CDS 2297358 2297673 . - 0 ID=cds-WP_109182024.1;Parent=gene-LLC55_RS10920;Dbxref=Genbank:WP_109182024.1;Name=WP_109182024.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS10920;product=IS5 family transposase;protein_id=WP_109182024.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2296910 2297358 . - 2 ID=cds-WP_109182024.1;Parent=gene-LLC55_RS10920;Dbxref=Genbank:WP_109182024.1;Name=WP_109182024.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS10920;product=IS5 family transposase;protein_id=WP_109182024.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2297955 2298731 . + . ID=gene-LLC55_RS10925;Name=LLC55_RS10925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10925;old_locus_tag=LLC55_10930 NZ_CP086200.1 Protein Homology CDS 2297955 2298731 . + 0 ID=cds-WP_011260456.1;Parent=gene-LLC55_RS10925;Dbxref=Genbank:WP_011260456.1;Name=WP_011260456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157008.1;locus_tag=LLC55_RS10925;product=hypothetical protein;protein_id=WP_011260456.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2298728 2300044 . + . ID=gene-LLC55_RS10930;Name=LLC55_RS10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10930;old_locus_tag=LLC55_10935 NZ_CP086200.1 Protein Homology CDS 2298728 2300044 . + 0 ID=cds-WP_011409554.1;Parent=gene-LLC55_RS10930;Dbxref=Genbank:WP_011409554.1;Name=WP_011409554.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409554.1;locus_tag=LLC55_RS10930;product=amino acid permease;protein_id=WP_011409554.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2300103 2300498 . - . ID=gene-LLC55_RS10935;Name=LLC55_RS10935;end_range=2300498,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10935;old_locus_tag=LLC55_10940;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2300103 2300498 . - 0 ID=cds-LLC55_RS10935;Parent=gene-LLC55_RS10935;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2300498,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LLC55_RS10935;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2300561 2301796 . + . ID=gene-LLC55_RS10940;Name=LLC55_RS10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10940;old_locus_tag=LLC55_10945 NZ_CP086200.1 Protein Homology CDS 2300561 2301796 . + 0 ID=cds-WP_011408623.1;Parent=gene-LLC55_RS10940;Dbxref=Genbank:WP_011408623.1;Name=WP_011408623.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS10940;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011408623.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2301813 2302186 . - . ID=gene-LLC55_RS10945;Name=LLC55_RS10945;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10945;old_locus_tag=LLC55_10950;partial=true;pseudo=true;start_range=.,2301813 NZ_CP086200.1 Protein Homology CDS 2301813 2302186 . - 0 ID=cds-LLC55_RS10945;Parent=gene-LLC55_RS10945;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS10945;partial=true;product=IS5 family transposase;pseudo=true;start_range=.,2301813;transl_table=11 NZ_CP086200.1 RefSeq gene 2302249 2302324 . - . ID=gene-LLC55_RS10950;Name=LLC55_RS10950;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS10950;old_locus_tag=LLC55_10955 NZ_CP086200.1 cmsearch ncRNA 2302249 2302324 . - . ID=rna-LLC55_RS10950;Parent=gene-LLC55_RS10950;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10950;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2302249 2302324 . - . ID=exon-LLC55_RS10950-1;Parent=rna-LLC55_RS10950;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS10950;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 2302387 2302671 . + . ID=gene-LLC55_RS10955;Name=LLC55_RS10955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10955;old_locus_tag=LLC55_10960;partial=true;pseudo=true;start_range=.,2302387 NZ_CP086200.1 Protein Homology CDS 2302387 2302671 . + 0 ID=cds-LLC55_RS10955;Parent=gene-LLC55_RS10955;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159376.1;locus_tag=LLC55_RS10955;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2302387;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2302844 2303177 . + . ID=gene-LLC55_RS10960;Name=LLC55_RS10960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10960;old_locus_tag=LLC55_10965;pseudo=true NZ_CP086200.1 Protein Homology CDS 2302844 2303177 . + 0 ID=cds-LLC55_RS10960;Parent=gene-LLC55_RS10960;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348827.1;locus_tag=LLC55_RS10960;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2303232 2303666 . - . ID=gene-LLC55_RS10965;Name=yiaA;gbkey=Gene;gene=yiaA;gene_biotype=protein_coding;locus_tag=LLC55_RS10965;old_locus_tag=LLC55_10970 NZ_CP086200.1 Protein Homology CDS 2303232 2303666 . - 0 ID=cds-WP_011260461.1;Parent=gene-LLC55_RS10965;Dbxref=Genbank:WP_011260461.1;Name=WP_011260461.1;gbkey=CDS;gene=yiaA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501725.1;locus_tag=LLC55_RS10965;product=inner membrane protein YiaA;protein_id=WP_011260461.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2303841 2305019 . + . ID=gene-LLC55_RS10970;Name=LLC55_RS10970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10970;old_locus_tag=LLC55_10975 NZ_CP086200.1 Protein Homology CDS 2303841 2305019 . + 0 ID=cds-WP_011409559.1;Parent=gene-LLC55_RS10970;Dbxref=Genbank:WP_011409559.1;Name=WP_011409559.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484599.1;locus_tag=LLC55_RS10970;product=PQQ-dependent sugar dehydrogenase;protein_id=WP_011409559.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2305402 2305923 . + . ID=gene-LLC55_RS10975;Name=LLC55_RS10975;end_range=2305923,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10975;old_locus_tag=LLC55_10980;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2305402 2305923 . + 0 ID=cds-LLC55_RS10975;Parent=gene-LLC55_RS10975;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2305923,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444376.1;locus_tag=LLC55_RS10975;partial=true;product=winged helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2306015 2306977 . + . ID=gene-LLC55_RS10980;Name=LLC55_RS10980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS10980;old_locus_tag=LLC55_10985 NZ_CP086200.1 Protein Homology CDS 2306015 2306977 . + 0 ID=cds-WP_069960023.1;Parent=gene-LLC55_RS10980;Dbxref=Genbank:WP_069960023.1;Name=WP_069960023.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182294.1;locus_tag=LLC55_RS10980;product=IS1595-like element ISXo2 family transposase;protein_id=WP_069960023.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2306995 2307540 . + . ID=gene-LLC55_RS10985;Name=LLC55_RS10985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10985;old_locus_tag=LLC55_10990;partial=true;pseudo=true;start_range=.,2306995 NZ_CP086200.1 Protein Homology CDS 2306995 2307540 . + 0 ID=cds-LLC55_RS10985;Parent=gene-LLC55_RS10985;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257047.1;locus_tag=LLC55_RS10985;partial=true;product=IS630 family transposase;pseudo=true;start_range=.,2306995;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2307671 2308636 . - . ID=gene-LLC55_RS10990;Name=LLC55_RS10990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10990;old_locus_tag=LLC55_10995;pseudo=true NZ_CP086200.1 Protein Homology CDS 2307671 2308636 . - 0 ID=cds-LLC55_RS10990;Parent=gene-LLC55_RS10990;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS10990;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2308726 2309181 . + . ID=gene-LLC55_RS10995;Name=LLC55_RS10995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS10995;old_locus_tag=LLC55_11000;partial=true;pseudo=true;start_range=.,2308726 NZ_CP086200.1 Protein Homology CDS 2308726 2309181 . + 0 ID=cds-LLC55_RS10995;Parent=gene-LLC55_RS10995;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS10995;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,2308726;transl_table=11 NZ_CP086200.1 RefSeq gene 2309311 2311482 . - . ID=gene-LLC55_RS11000;Name=LLC55_RS11000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11000;old_locus_tag=LLC55_11005 NZ_CP086200.1 Protein Homology CDS 2309311 2311482 . - 0 ID=cds-WP_011260467.1;Parent=gene-LLC55_RS11000;Dbxref=Genbank:WP_011260467.1;Name=WP_011260467.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305265.1;locus_tag=LLC55_RS11000;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=WP_011260467.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2311710 2312066 . - . ID=gene-LLC55_RS11005;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=LLC55_RS11005;old_locus_tag=LLC55_11010 NZ_CP086200.1 Protein Homology CDS 2311710 2312066 . - 0 ID=cds-WP_011409563.1;Parent=gene-LLC55_RS11005;Dbxref=Genbank:WP_011409563.1;Name=WP_011409563.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folB;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973559.1;locus_tag=LLC55_RS11005;product=dihydroneopterin aldolase;protein_id=WP_011409563.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2312145 2313209 . - . ID=gene-LLC55_RS11010;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=LLC55_RS11010;old_locus_tag=LLC55_11015 NZ_CP086200.1 Protein Homology CDS 2312145 2313209 . - 0 ID=cds-WP_011260469.1;Parent=gene-LLC55_RS11010;Dbxref=Genbank:WP_011260469.1;Name=WP_011260469.1;Ontology_term=GO:0006400;gbkey=CDS;gene=tsaD;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501720.1;locus_tag=LLC55_RS11010;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_011260469.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2313489 2313704 . + . ID=gene-LLC55_RS11015;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=LLC55_RS11015;old_locus_tag=LLC55_11020 NZ_CP086200.1 Protein Homology CDS 2313489 2313704 . + 0 ID=cds-WP_002808376.1;Parent=gene-LLC55_RS11015;Dbxref=Genbank:WP_002808376.1;Name=WP_002808376.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsU;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011235429.1;locus_tag=LLC55_RS11015;product=30S ribosomal protein S21;protein_id=WP_002808376.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2314012 2314458 . + . ID=gene-LLC55_RS11020;Name=LLC55_RS11020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11020;old_locus_tag=LLC55_11025 NZ_CP086200.1 Protein Homology CDS 2314012 2314458 . + 0 ID=cds-WP_011409564.1;Parent=gene-LLC55_RS11020;Dbxref=Genbank:WP_011409564.1;Name=WP_011409564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038898.1;locus_tag=LLC55_RS11020;product=GatB/YqeY domain-containing protein;protein_id=WP_011409564.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2315288 2315363 . + . ID=gene-LLC55_RS11025;Name=LLC55_RS11025;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS11025;old_locus_tag=LLC55_11030 NZ_CP086200.1 cmsearch ncRNA 2315288 2315363 . + . ID=rna-LLC55_RS11025;Parent=gene-LLC55_RS11025;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11025;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2315288 2315363 . + . ID=exon-LLC55_RS11025-1;Parent=rna-LLC55_RS11025;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11025;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2315936 2316898 . + . ID=gene-LLC55_RS11030;Name=LLC55_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11030;old_locus_tag=LLC55_11035 NZ_CP086200.1 Protein Homology CDS 2315936 2316898 . + 0 ID=cds-WP_012443989.1;Parent=gene-LLC55_RS11030;Dbxref=Genbank:WP_012443989.1;Name=WP_012443989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501718.1;locus_tag=LLC55_RS11030;product=YihY/virulence factor BrkB family protein;protein_id=WP_012443989.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2316988 2318736 . + . ID=gene-LLC55_RS11035;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=LLC55_RS11035;old_locus_tag=LLC55_11040 NZ_CP086200.1 Protein Homology CDS 2316988 2318736 . + 0 ID=cds-WP_011260472.1;Parent=gene-LLC55_RS11035;Dbxref=Genbank:WP_011260472.1;Name=WP_011260472.1;Ontology_term=GO:0006269,GO:0003896;gbkey=CDS;gene=dnaG;go_function=DNA primase activity|0003896||IEA;go_process=DNA replication%2C synthesis of RNA primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506325.1;locus_tag=LLC55_RS11035;product=DNA primase;protein_id=WP_011260472.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2318758 2320074 . - . ID=gene-LLC55_RS11040;Name=LLC55_RS11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11040;old_locus_tag=LLC55_11045 NZ_CP086200.1 Protein Homology CDS 2318758 2320074 . - 0 ID=cds-WP_069963905.1;Parent=gene-LLC55_RS11040;Dbxref=Genbank:WP_069963905.1;Name=WP_069963905.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409568.1;locus_tag=LLC55_RS11040;product=IS701 family transposase;protein_id=WP_069963905.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2320064 2320309 . - . ID=gene-LLC55_RS11045;Name=LLC55_RS11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11045;old_locus_tag=LLC55_11050 NZ_CP086200.1 GeneMarkS-2+ CDS 2320064 2320309 . - 0 ID=cds-WP_041182298.1;Parent=gene-LLC55_RS11045;Dbxref=Genbank:WP_041182298.1;Name=WP_041182298.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS11045;product=hypothetical protein;protein_id=WP_041182298.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2320309 2320575 . - . ID=gene-LLC55_RS11050;Name=LLC55_RS11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11050;old_locus_tag=LLC55_11055 NZ_CP086200.1 GeneMarkS-2+ CDS 2320309 2320575 . - 0 ID=cds-WP_059317500.1;Parent=gene-LLC55_RS11050;Dbxref=Genbank:WP_059317500.1;Name=WP_059317500.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS11050;product=hypothetical protein;protein_id=WP_059317500.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2320800 2321846 . + . ID=gene-LLC55_RS11055;Name=LLC55_RS11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11055;old_locus_tag=LLC55_11060 NZ_CP086200.1 Protein Homology CDS 2320800 2321846 . + 0 ID=cds-WP_033013369.1;Parent=gene-LLC55_RS11055;Dbxref=Genbank:WP_033013369.1;Name=WP_033013369.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301736.1;locus_tag=LLC55_RS11055;product=bile acid:sodium symporter;protein_id=WP_033013369.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2322030 2323610 . + . ID=gene-LLC55_RS11060;Name=LLC55_RS11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11060;old_locus_tag=LLC55_11065 NZ_CP086200.1 Protein Homology CDS 2322030 2323610 . + 0 ID=cds-WP_011409569.1;Parent=gene-LLC55_RS11060;Dbxref=Genbank:WP_011409569.1;Name=WP_011409569.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174430.1;locus_tag=LLC55_RS11060;product=thioredoxin family protein;protein_id=WP_011409569.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2323731 2323807 . - . ID=gene-LLC55_RS11065;Name=LLC55_RS11065;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS11065;old_locus_tag=LLC55_11070 NZ_CP086200.1 cmsearch ncRNA 2323731 2323807 . - . ID=rna-LLC55_RS11065;Parent=gene-LLC55_RS11065;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11065;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2323731 2323807 . - . ID=exon-LLC55_RS11065-1;Parent=rna-LLC55_RS11065;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11065;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2323999 2324895 . - . ID=gene-LLC55_RS11070;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=LLC55_RS11070;old_locus_tag=LLC55_11075 NZ_CP086200.1 Protein Homology CDS 2323999 2324895 . - 0 ID=cds-WP_011409570.1;Parent=gene-LLC55_RS11070;Dbxref=Genbank:WP_011409570.1;Name=WP_011409570.1;Ontology_term=GO:0006783,GO:0008495;gbkey=CDS;gene=cyoE;go_function=protoheme IX farnesyltransferase activity|0008495||IEA;go_process=heme biosynthetic process|0006783||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966545.1;locus_tag=LLC55_RS11070;product=heme o synthase;protein_id=WP_011409570.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2324898 2326061 . - . ID=gene-LLC55_RS11075;Name=LLC55_RS11075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11075;old_locus_tag=LLC55_11080 NZ_CP086200.1 Protein Homology CDS 2324898 2326061 . - 0 ID=cds-WP_011260477.1;Parent=gene-LLC55_RS11075;Dbxref=Genbank:WP_011260477.1;Name=WP_011260477.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238044.1;locus_tag=LLC55_RS11075;product=COX15/CtaA family protein;protein_id=WP_011260477.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2326072 2326647 . - . ID=gene-LLC55_RS11080;Name=LLC55_RS11080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11080;old_locus_tag=LLC55_11085 NZ_CP086200.1 Protein Homology CDS 2326072 2326647 . - 0 ID=cds-WP_011260478.1;Parent=gene-LLC55_RS11080;Dbxref=Genbank:WP_011260478.1;Name=WP_011260478.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303937.1;locus_tag=LLC55_RS11080;product=hypothetical protein;protein_id=WP_011260478.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2326675 2327394 . - . ID=gene-LLC55_RS11085;Name=LLC55_RS11085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11085;old_locus_tag=LLC55_11090 NZ_CP086200.1 Protein Homology CDS 2326675 2327394 . - 0 ID=cds-WP_011409571.1;Parent=gene-LLC55_RS11085;Dbxref=Genbank:WP_011409571.1;Name=WP_011409571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172044.1;locus_tag=LLC55_RS11085;product=SURF1 family protein;protein_id=WP_011409571.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2327455 2327673 . + . ID=gene-LLC55_RS11090;Name=LLC55_RS11090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11090;old_locus_tag=LLC55_11095 NZ_CP086200.1 Protein Homology CDS 2327455 2327673 . + 0 ID=cds-WP_012443949.1;Parent=gene-LLC55_RS11090;Dbxref=Genbank:WP_012443949.1;Name=WP_012443949.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157720.1;locus_tag=LLC55_RS11090;product=twin transmembrane helix small protein;protein_id=WP_012443949.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2327766 2328641 . - . ID=gene-LLC55_RS11095;Name=LLC55_RS11095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11095;old_locus_tag=LLC55_11100 NZ_CP086200.1 Protein Homology CDS 2327766 2328641 . - 0 ID=cds-WP_011260481.1;Parent=gene-LLC55_RS11095;Dbxref=Genbank:WP_011260481.1;Name=WP_011260481.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501710.1;locus_tag=LLC55_RS11095;product=cytochrome c oxidase subunit 3;protein_id=WP_011260481.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2328680 2329276 . - . ID=gene-LLC55_RS11100;Name=LLC55_RS11100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11100;old_locus_tag=LLC55_11105 NZ_CP086200.1 Protein Homology CDS 2328680 2329276 . - 0 ID=cds-WP_011260482.1;Parent=gene-LLC55_RS11100;Dbxref=Genbank:WP_011260482.1;Name=WP_011260482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163727.1;locus_tag=LLC55_RS11100;product=cytochrome c oxidase assembly protein;protein_id=WP_011260482.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2329273 2329446 . - . ID=gene-LLC55_RS11105;Name=LLC55_RS11105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11105;old_locus_tag=LLC55_11110 NZ_CP086200.1 Protein Homology CDS 2329273 2329446 . - 0 ID=cds-WP_011409573.1;Parent=gene-LLC55_RS11105;Dbxref=Genbank:WP_011409573.1;Name=WP_011409573.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484652.1;locus_tag=LLC55_RS11105;product=hypothetical protein;protein_id=WP_011409573.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2329427 2331031 . - . ID=gene-LLC55_RS11110;Name=ctaD;gbkey=Gene;gene=ctaD;gene_biotype=protein_coding;locus_tag=LLC55_RS11110;old_locus_tag=LLC55_11115 NZ_CP086200.1 Protein Homology CDS 2329427 2331031 . - 0 ID=cds-WP_011260484.1;Parent=gene-LLC55_RS11110;Dbxref=Genbank:WP_011260484.1;Name=WP_011260484.1;Ontology_term=GO:0004129;gbkey=CDS;gene=ctaD;go_function=cytochrome-c oxidase activity|0004129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501708.1;locus_tag=LLC55_RS11110;product=cytochrome c oxidase subunit I;protein_id=WP_011260484.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2331070 2332023 . - . ID=gene-LLC55_RS11115;Name=coxB;gbkey=Gene;gene=coxB;gene_biotype=protein_coding;locus_tag=LLC55_RS11115;old_locus_tag=LLC55_11120 NZ_CP086200.1 Protein Homology CDS 2331070 2332023 . - 0 ID=cds-WP_069964612.1;Parent=gene-LLC55_RS11115;Dbxref=Genbank:WP_069964612.1;Name=WP_069964612.1;Ontology_term=GO:0004129;gbkey=CDS;gene=coxB;go_function=cytochrome-c oxidase activity|0004129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157718.1;locus_tag=LLC55_RS11115;product=cytochrome c oxidase subunit II;protein_id=WP_069964612.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2332040 2332516 . - . ID=gene-LLC55_RS11120;Name=LLC55_RS11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11120;old_locus_tag=LLC55_11125 NZ_CP086200.1 Protein Homology CDS 2332040 2332516 . - 0 ID=cds-WP_044757542.1;Parent=gene-LLC55_RS11120;Dbxref=Genbank:WP_044757542.1;Name=WP_044757542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484655.1;locus_tag=LLC55_RS11120;product=DUF2244 domain-containing protein;protein_id=WP_044757542.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2332793 2335993 . + . ID=gene-LLC55_RS11125;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=LLC55_RS11125;old_locus_tag=LLC55_11130 NZ_CP086200.1 Protein Homology CDS 2332793 2335993 . + 0 ID=cds-WP_011260487.1;Parent=gene-LLC55_RS11125;Dbxref=Genbank:WP_011260487.1;Name=WP_011260487.1;Ontology_term=GO:0006355,GO:0010133,GO:0003700,GO:0003842,GO:0004657,GO:0016620;gbkey=CDS;gene=putA;go_function=DNA-binding transcription factor activity|0003700||IEA,1-pyrroline-5-carboxylate dehydrogenase activity|0003842||IEA,proline dehydrogenase activity|0004657||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,proline catabolic process to glutamate|0010133||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301724.1;locus_tag=LLC55_RS11125;product=bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA;protein_id=WP_011260487.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2336153 2337118 . + . ID=gene-LLC55_RS11130;Name=LLC55_RS11130;end_range=2337118,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11130;old_locus_tag=LLC55_11135;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2336153 2337118 . + 0 ID=cds-LLC55_RS11130;Parent=gene-LLC55_RS11130;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=2337118,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS11130;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2337209 2338174 . + . ID=gene-LLC55_RS11135;Name=LLC55_RS11135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11135;old_locus_tag=LLC55_11140 NZ_CP086200.1 Protein Homology CDS 2337209 2338174 . + 0 ID=cds-WP_109182027.1-2;Parent=gene-LLC55_RS11135;Dbxref=Genbank:WP_109182027.1;Name=WP_109182027.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS11135;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182027.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2338187 2338657 . - . ID=gene-LLC55_RS11140;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=LLC55_RS11140;old_locus_tag=LLC55_11145 NZ_CP086200.1 Protein Homology CDS 2338187 2338657 . - 0 ID=cds-WP_069960028.1;Parent=gene-LLC55_RS11140;Dbxref=Genbank:WP_069960028.1;Name=WP_069960028.1;Ontology_term=GO:0006880,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular sequestering of iron ion|0006880||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808230.1;locus_tag=LLC55_RS11140;product=bacterioferritin;protein_id=WP_069960028.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2339000 2339215 . - . ID=gene-LLC55_RS11145;Name=LLC55_RS11145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11145;old_locus_tag=LLC55_11150 NZ_CP086200.1 Protein Homology CDS 2339000 2339215 . - 0 ID=cds-WP_027703893.1;Parent=gene-LLC55_RS11145;Dbxref=Genbank:WP_027703893.1;Name=WP_027703893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411309.1;locus_tag=LLC55_RS11145;product=(2Fe-2S)-binding protein;protein_id=WP_027703893.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2339296 2339913 . - . ID=gene-LLC55_RS11150;Name=LLC55_RS11150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11150;old_locus_tag=LLC55_11155 NZ_CP086200.1 Protein Homology CDS 2339296 2339913 . - 0 ID=cds-WP_011260490.1;Parent=gene-LLC55_RS11150;Dbxref=Genbank:WP_011260490.1;Name=WP_011260490.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167453.1;locus_tag=LLC55_RS11150;product=RNA pyrophosphohydrolase;protein_id=WP_011260490.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2340032 2340108 . + . ID=gene-LLC55_RS11155;Name=LLC55_RS11155;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS11155;old_locus_tag=LLC55_11160 NZ_CP086200.1 tRNAscan-SE tRNA 2340032 2340108 . + . ID=rna-LLC55_RS11155;Parent=gene-LLC55_RS11155;anticodon=(pos:2340066..2340068);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS11155;product=tRNA-Met NZ_CP086200.1 tRNAscan-SE exon 2340032 2340108 . + . ID=exon-LLC55_RS11155-1;Parent=rna-LLC55_RS11155;anticodon=(pos:2340066..2340068);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS11155;product=tRNA-Met NZ_CP086200.1 RefSeq gene 2340161 2340234 . + . ID=gene-LLC55_RS11160;Name=LLC55_RS11160;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS11160;old_locus_tag=LLC55_11165 NZ_CP086200.1 tRNAscan-SE tRNA 2340161 2340234 . + . ID=rna-LLC55_RS11160;Parent=gene-LLC55_RS11160;anticodon=(pos:2340193..2340195);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS11160;product=tRNA-Gln NZ_CP086200.1 tRNAscan-SE exon 2340161 2340234 . + . ID=exon-LLC55_RS11160-1;Parent=rna-LLC55_RS11160;anticodon=(pos:2340193..2340195);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS11160;product=tRNA-Gln NZ_CP086200.1 RefSeq gene 2340462 2340854 . - . ID=gene-LLC55_RS11165;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=LLC55_RS11165;old_locus_tag=LLC55_11170 NZ_CP086200.1 Protein Homology CDS 2340462 2340854 . - 0 ID=cds-WP_005990700.1;Parent=gene-LLC55_RS11165;Dbxref=Genbank:WP_005990700.1;Name=WP_005990700.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000829824.1;locus_tag=LLC55_RS11165;product=30S ribosomal protein S9;protein_id=WP_005990700.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2340858 2341286 . - . ID=gene-LLC55_RS11170;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=LLC55_RS11170;old_locus_tag=LLC55_11175 NZ_CP086200.1 Protein Homology CDS 2340858 2341286 . - 0 ID=cds-WP_011260491.1;Parent=gene-LLC55_RS11170;Dbxref=Genbank:WP_011260491.1;Name=WP_011260491.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplM;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451009.1;locus_tag=LLC55_RS11170;product=50S ribosomal protein L13;protein_id=WP_011260491.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2341472 2342125 . + . ID=gene-LLC55_RS11175;Name=coq7;gbkey=Gene;gene=coq7;gene_biotype=protein_coding;locus_tag=LLC55_RS11175;old_locus_tag=LLC55_11180 NZ_CP086200.1 Protein Homology CDS 2341472 2342125 . + 0 ID=cds-WP_069960112.1;Parent=gene-LLC55_RS11175;Dbxref=Genbank:WP_069960112.1;Name=WP_069960112.1;Ontology_term=GO:0006744,GO:0004497;gbkey=CDS;gene=coq7;go_function=monooxygenase activity|0004497||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483072.1;locus_tag=LLC55_RS11175;product=2-polyprenyl-3-methyl-6-methoxy-1%2C4-benzoquinone monooxygenase;protein_id=WP_069960112.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2342382 2342696 . - . ID=gene-LLC55_RS11180;Name=LLC55_RS11180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11180;old_locus_tag=LLC55_11185 NZ_CP086200.1 Protein Homology CDS 2342382 2342696 . - 0 ID=cds-WP_011409578.1;Parent=gene-LLC55_RS11180;Dbxref=Genbank:WP_011409578.1;Name=WP_011409578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990694.1;locus_tag=LLC55_RS11180;product=multidrug efflux SMR transporter;protein_id=WP_011409578.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2342856 2343650 . - . ID=gene-LLC55_RS11185;Name=speD;gbkey=Gene;gene=speD;gene_biotype=protein_coding;locus_tag=LLC55_RS11185;old_locus_tag=LLC55_11190 NZ_CP086200.1 Protein Homology CDS 2342856 2343650 . - 0 ID=cds-WP_011260494.1;Parent=gene-LLC55_RS11185;Dbxref=Genbank:WP_011260494.1;Name=WP_011260494.1;Ontology_term=GO:0008295,GO:0004014;gbkey=CDS;gene=speD;go_function=adenosylmethionine decarboxylase activity|0004014||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411315.1;locus_tag=LLC55_RS11185;product=adenosylmethionine decarboxylase;protein_id=WP_011260494.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2343788 2344480 . + . ID=gene-LLC55_RS11190;Name=crp;gbkey=Gene;gene=crp;gene_biotype=protein_coding;locus_tag=LLC55_RS11190;old_locus_tag=LLC55_11195 NZ_CP086200.1 Protein Homology CDS 2343788 2344480 . + 0 ID=cds-WP_011260495.1;Parent=gene-LLC55_RS11190;Dbxref=Genbank:WP_011260495.1;Name=WP_011260495.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=crp;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368067.1;locus_tag=LLC55_RS11190;product=cAMP-activated global transcriptional regulator CRP;protein_id=WP_011260495.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2344801 2345517 . - . ID=gene-LLC55_RS11195;Name=LLC55_RS11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11195;old_locus_tag=LLC55_11200 NZ_CP086200.1 Protein Homology CDS 2344801 2345517 . - 0 ID=cds-WP_011409579.1;Parent=gene-LLC55_RS11195;Dbxref=Genbank:WP_011409579.1;Name=WP_011409579.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808250.1;locus_tag=LLC55_RS11195;product=haloacid dehalogenase-like hydrolase;protein_id=WP_011409579.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2345510 2346382 . - . ID=gene-LLC55_RS11200;Name=trpC;gbkey=Gene;gene=trpC;gene_biotype=protein_coding;locus_tag=LLC55_RS11200;old_locus_tag=LLC55_11205 NZ_CP086200.1 Protein Homology CDS 2345510 2346382 . - 0 ID=cds-WP_027703892.1;Parent=gene-LLC55_RS11200;Dbxref=Genbank:WP_027703892.1;Name=WP_027703892.1;Ontology_term=GO:0006568,GO:0004425;gbkey=CDS;gene=trpC;go_function=indole-3-glycerol-phosphate synthase activity|0004425||IEA;go_process=tryptophan metabolic process|0006568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303763.1;locus_tag=LLC55_RS11200;product=indole-3-glycerol phosphate synthase TrpC;protein_id=WP_027703892.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2346444 2347481 . - . ID=gene-LLC55_RS11205;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=LLC55_RS11205;old_locus_tag=LLC55_11210 NZ_CP086200.1 Protein Homology CDS 2346444 2347481 . - 0 ID=cds-WP_011409580.1;Parent=gene-LLC55_RS11205;Dbxref=Genbank:WP_011409580.1;Name=WP_011409580.1;Ontology_term=GO:0000162,GO:0004048;gbkey=CDS;gene=trpD;go_function=anthranilate phosphoribosyltransferase activity|0004048||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157930.1;locus_tag=LLC55_RS11205;product=anthranilate phosphoribosyltransferase;protein_id=WP_011409580.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2347599 2348228 . - . ID=gene-LLC55_RS11210;Name=LLC55_RS11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11210;old_locus_tag=LLC55_11215 NZ_CP086200.1 Protein Homology CDS 2347599 2348228 . - 0 ID=cds-WP_011260499.1;Parent=gene-LLC55_RS11210;Dbxref=Genbank:WP_011260499.1;Name=WP_011260499.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260499.1;locus_tag=LLC55_RS11210;product=flavin reductase family protein;protein_id=WP_011260499.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2348380 2348961 . - . ID=gene-LLC55_RS11215;Name=LLC55_RS11215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11215;old_locus_tag=LLC55_11220 NZ_CP086200.1 Protein Homology CDS 2348380 2348961 . - 0 ID=cds-WP_011409581.1;Parent=gene-LLC55_RS11215;Dbxref=Genbank:WP_011409581.1;Name=WP_011409581.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802968.1;locus_tag=LLC55_RS11215;product=aminodeoxychorismate/anthranilate synthase component II;protein_id=WP_011409581.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2349667 2350344 . + . ID=gene-LLC55_RS11220;Name=LLC55_RS11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11220;old_locus_tag=LLC55_11225 NZ_CP086200.1 Protein Homology CDS 2349667 2350344 . + 0 ID=cds-WP_011409582.1;Parent=gene-LLC55_RS11220;Dbxref=Genbank:WP_011409582.1;Name=WP_011409582.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019530.2;locus_tag=LLC55_RS11220;product=conjugal transfer protein TraG N-terminal domain-containing protein;protein_id=WP_011409582.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2350449 2351491 . + . ID=gene-LLC55_RS11225;Name=LLC55_RS11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11225;old_locus_tag=LLC55_11230 NZ_CP086200.1 Protein Homology CDS 2350449 2350644 . + 0 ID=cds-WP_229001943.1;Parent=gene-LLC55_RS11225;Dbxref=Genbank:WP_229001943.1;Name=WP_229001943.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS11225;product=IS3 family transposase;protein_id=WP_229001943.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2350644 2351491 . + 2 ID=cds-WP_229001943.1;Parent=gene-LLC55_RS11225;Dbxref=Genbank:WP_229001943.1;Name=WP_229001943.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS11225;product=IS3 family transposase;protein_id=WP_229001943.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2351539 2351763 . - . ID=gene-LLC55_RS11230;Name=LLC55_RS11230;end_range=2351763,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11230;old_locus_tag=LLC55_11235;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2351539 2351763 . - 0 ID=cds-LLC55_RS11230;Parent=gene-LLC55_RS11230;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2351763,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167547.1;locus_tag=LLC55_RS11230;partial=true;product=biotin transporter BioY;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2351789 2352021 . + . ID=gene-LLC55_RS11235;Name=LLC55_RS11235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11235;old_locus_tag=LLC55_11240;pseudo=true NZ_CP086200.1 Protein Homology CDS 2351789 2352021 . + 0 ID=cds-LLC55_RS11235;Parent=gene-LLC55_RS11235;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300073.1;locus_tag=LLC55_RS11235;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2352095 2354326 . - . ID=gene-LLC55_RS11240;Name=LLC55_RS11240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11240;old_locus_tag=LLC55_11245 NZ_CP086200.1 Protein Homology CDS 2352095 2354326 . - 0 ID=cds-WP_011409585.1;Parent=gene-LLC55_RS11240;Dbxref=Genbank:WP_011409585.1;Name=WP_011409585.1;Ontology_term=GO:0006099,GO:0004450;gbkey=CDS;go_function=isocitrate dehydrogenase (NADP+) activity|0004450||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157024.1;locus_tag=LLC55_RS11240;product=NADP-dependent isocitrate dehydrogenase;protein_id=WP_011409585.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2354516 2356228 . + . ID=gene-LLC55_RS11245;Name=LLC55_RS11245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11245;old_locus_tag=LLC55_11250 NZ_CP086200.1 Protein Homology CDS 2354516 2356228 . + 0 ID=cds-WP_069960113.1;Parent=gene-LLC55_RS11245;Dbxref=Genbank:WP_069960113.1;Name=WP_069960113.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300075.1;locus_tag=LLC55_RS11245;product=hypothetical protein;protein_id=WP_069960113.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2356377 2357753 . + . ID=gene-LLC55_RS11250;Name=LLC55_RS11250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11250;old_locus_tag=LLC55_11255 NZ_CP086200.1 Protein Homology CDS 2356377 2357753 . + 0 ID=cds-WP_069964614.1;Parent=gene-LLC55_RS11250;Dbxref=Genbank:WP_069964614.1;Name=WP_069964614.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS11250;product=IS5 family transposase;protein_id=WP_069964614.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2357783 2357929 . - . ID=gene-LLC55_RS11255;Name=LLC55_RS11255;end_range=2357929,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11255;old_locus_tag=LLC55_11260;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2357783 2357929 . - 0 ID=cds-LLC55_RS11255;Parent=gene-LLC55_RS11255;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2357929,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LLC55_RS11255;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2358112 2359275 . - . ID=gene-LLC55_RS11260;Name=LLC55_RS11260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11260;old_locus_tag=LLC55_11265;pseudo=true NZ_CP086200.1 Protein Homology CDS 2358112 2359275 . - 0 ID=cds-LLC55_RS11260;Parent=gene-LLC55_RS11260;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035386.1;locus_tag=LLC55_RS11260;product=IS4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2359376 2359951 . - . ID=gene-LLC55_RS11265;Name=LLC55_RS11265;end_range=2359951,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11265;old_locus_tag=LLC55_11270;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2359376 2359951 . - 0 ID=cds-LLC55_RS11265;Parent=gene-LLC55_RS11265;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2359951,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS11265;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2359961 2360759 . - . ID=gene-LLC55_RS11270;Name=LLC55_RS11270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11270;old_locus_tag=LLC55_11275 NZ_CP086200.1 Protein Homology CDS 2360488 2360759 . - 0 ID=cds-WP_115801910.1;Parent=gene-LLC55_RS11270;Dbxref=Genbank:WP_115801910.1;Name=WP_115801910.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS11270;product=IS5 family transposase;protein_id=WP_115801910.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2359961 2360489 . - 1 ID=cds-WP_115801910.1;Parent=gene-LLC55_RS11270;Dbxref=Genbank:WP_115801910.1;Name=WP_115801910.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS11270;product=IS5 family transposase;protein_id=WP_115801910.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2360803 2361378 . + . ID=gene-LLC55_RS11275;Name=LLC55_RS11275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11275;old_locus_tag=LLC55_11280;partial=true;pseudo=true;start_range=.,2360803 NZ_CP086200.1 Protein Homology CDS 2360803 2361378 . + 0 ID=cds-LLC55_RS11275;Parent=gene-LLC55_RS11275;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS11275;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,2360803;transl_table=11 NZ_CP086200.1 RefSeq gene 2361858 2362241 . + . ID=gene-LLC55_RS11280;Name=LLC55_RS11280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11280;old_locus_tag=LLC55_11285 NZ_CP086200.1 GeneMarkS-2+ CDS 2361858 2362241 . + 0 ID=cds-WP_143699981.1;Parent=gene-LLC55_RS11280;Dbxref=Genbank:WP_143699981.1;Name=WP_143699981.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS11280;product=hypothetical protein;protein_id=WP_143699981.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2362518 2362700 . - . ID=gene-LLC55_RS11285;Name=LLC55_RS11285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11285;old_locus_tag=LLC55_11290;partial=true;pseudo=true;start_range=.,2362518 NZ_CP086200.1 Protein Homology CDS 2362518 2362700 . - 0 ID=cds-LLC55_RS11285;Parent=gene-LLC55_RS11285;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014403018.1;locus_tag=LLC55_RS11285;partial=true;product=transposase;pseudo=true;start_range=.,2362518;transl_table=11 NZ_CP086200.1 RefSeq gene 2362830 2363090 . + . ID=gene-LLC55_RS11290;Name=LLC55_RS11290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11290;old_locus_tag=LLC55_11295 NZ_CP086200.1 GeneMarkS-2+ CDS 2362830 2363090 . + 0 ID=cds-WP_200898175.1;Parent=gene-LLC55_RS11290;Dbxref=Genbank:WP_200898175.1;Name=WP_200898175.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS11290;product=hypothetical protein;protein_id=WP_200898175.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2363328 2364512 . - . ID=gene-LLC55_RS11295;Name=LLC55_RS11295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11295;old_locus_tag=LLC55_11300 NZ_CP086200.1 Protein Homology CDS 2363328 2364512 . - 0 ID=cds-WP_113063199.1;Parent=gene-LLC55_RS11295;Dbxref=Genbank:WP_113063199.1;Name=WP_113063199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS11295;product=IS256-like element IS1113 family transposase;protein_id=WP_113063199.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2364566 2364876 . - . ID=gene-LLC55_RS11300;Name=LLC55_RS11300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11300;old_locus_tag=LLC55_11305;pseudo=true NZ_CP086200.1 Protein Homology CDS 2364566 2364876 . - 0 ID=cds-LLC55_RS11300;Parent=gene-LLC55_RS11300;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923039.1;locus_tag=LLC55_RS11300;product=peptidoglycan-binding protein LysM;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2364980 2365795 . - . ID=gene-LLC55_RS11305;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=LLC55_RS11305;old_locus_tag=LLC55_11310 NZ_CP086200.1 Protein Homology CDS 2364980 2365795 . - 0 ID=cds-WP_011260517.1;Parent=gene-LLC55_RS11305;Dbxref=Genbank:WP_011260517.1;Name=WP_011260517.1;Note=Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;Ontology_term=GO:0008616,GO:0033739,GO:0043867;gbkey=CDS;gene=queF;go_function=preQ1 synthase activity|0033739||IEA,7-cyano-7-deazaguanine tRNA-ribosyltransferase activity|0043867||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171998.1;locus_tag=LLC55_RS11305;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=WP_011260517.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2365888 2366547 . + . ID=gene-LLC55_RS11310;Name=LLC55_RS11310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11310;old_locus_tag=LLC55_11315;partial=true;pseudo=true;start_range=.,2365888 NZ_CP086200.1 Protein Homology CDS 2365888 2366547 . + 0 ID=cds-LLC55_RS11310;Parent=gene-LLC55_RS11310;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801519.1;locus_tag=LLC55_RS11310;partial=true;product=IS5 family transposase;pseudo=true;start_range=.,2365888;transl_table=11 NZ_CP086200.1 RefSeq gene 2366554 2367870 . - . ID=gene-LLC55_RS11315;Name=LLC55_RS11315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11315;old_locus_tag=LLC55_11320 NZ_CP086200.1 Protein Homology CDS 2366554 2367870 . - 0 ID=cds-WP_069960034.1;Parent=gene-LLC55_RS11315;Dbxref=Genbank:WP_069960034.1;Name=WP_069960034.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304562.1;locus_tag=LLC55_RS11315;product=M20 family metallopeptidase;protein_id=WP_069960034.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2368130 2369374 . + . ID=gene-LLC55_RS11320;Name=LLC55_RS11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11320;old_locus_tag=LLC55_11325 NZ_CP086200.1 Protein Homology CDS 2368130 2369374 . + 0 ID=cds-WP_011260520.1;Parent=gene-LLC55_RS11320;Dbxref=Genbank:WP_011260520.1;Name=WP_011260520.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849343.1;locus_tag=LLC55_RS11320;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_011260520.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2369467 2372715 . + . ID=gene-LLC55_RS11325;Name=LLC55_RS11325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11325;old_locus_tag=LLC55_11330 NZ_CP086200.1 Protein Homology CDS 2369467 2372715 . + 0 ID=cds-WP_011260521.1;Parent=gene-LLC55_RS11325;Dbxref=Genbank:WP_011260521.1;Name=WP_011260521.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238036.1;locus_tag=LLC55_RS11325;product=efflux RND transporter permease subunit;protein_id=WP_011260521.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2372849 2375989 . + . ID=gene-LLC55_RS11330;Name=LLC55_RS11330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11330;old_locus_tag=LLC55_11335 NZ_CP086200.1 Protein Homology CDS 2372849 2375989 . + 0 ID=cds-WP_011409597.1;Parent=gene-LLC55_RS11330;Dbxref=Genbank:WP_011409597.1;Name=WP_011409597.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171705.1;locus_tag=LLC55_RS11330;product=efflux RND transporter permease subunit;protein_id=WP_011409597.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2376279 2377646 . - . ID=gene-LLC55_RS11335;Name=LLC55_RS11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11335;old_locus_tag=LLC55_11340 NZ_CP086200.1 Protein Homology CDS 2376279 2377646 . - 0 ID=cds-WP_011409598.1;Parent=gene-LLC55_RS11335;Dbxref=Genbank:WP_011409598.1;Name=WP_011409598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973536.1;locus_tag=LLC55_RS11335;product=VOC family protein;protein_id=WP_011409598.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2377976 2378386 . - . ID=gene-LLC55_RS11340;Name=LLC55_RS11340;end_range=2378386,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11340;old_locus_tag=LLC55_11345;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2377976 2378386 . - 0 ID=cds-LLC55_RS11340;Parent=gene-LLC55_RS11340;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=2378386,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS11340;partial=true;product=IS5-like element ISXo3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2378391 2379356 . - . ID=gene-LLC55_RS11345;Name=LLC55_RS11345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11345;old_locus_tag=LLC55_11350;pseudo=true NZ_CP086200.1 Protein Homology CDS 2378391 2379356 . - 0 ID=cds-LLC55_RS11345;Parent=gene-LLC55_RS11345;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS11345;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2379444 2379768 . - . ID=gene-LLC55_RS11350;Name=LLC55_RS11350;end_range=2379768,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11350;old_locus_tag=LLC55_11355;partial=true;pseudo=true;start_range=.,2379444 NZ_CP086200.1 Protein Homology CDS 2379444 2379768 . - 0 ID=cds-LLC55_RS11350;Parent=gene-LLC55_RS11350;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2379768,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS11350;partial=true;product=transposase;pseudo=true;start_range=.,2379444;transl_table=11 NZ_CP086200.1 RefSeq gene 2379775 2380740 . - . ID=gene-LLC55_RS11355;Name=LLC55_RS11355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11355;old_locus_tag=LLC55_11360 NZ_CP086200.1 Protein Homology CDS 2379775 2380740 . - 0 ID=cds-WP_069964616.1;Parent=gene-LLC55_RS11355;Dbxref=Genbank:WP_069964616.1;Name=WP_069964616.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS11355;product=IS1595-like element ISXo5 family transposase;protein_id=WP_069964616.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2381203 2381673 . + . ID=gene-LLC55_RS11360;Name=LLC55_RS11360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11360;old_locus_tag=LLC55_11365 NZ_CP086200.1 Protein Homology CDS 2381203 2381673 . + 0 ID=cds-WP_027703675.1;Parent=gene-LLC55_RS11360;Dbxref=Genbank:WP_027703675.1;Name=WP_027703675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156408.1;locus_tag=LLC55_RS11360;product=YiiD C-terminal domain-containing protein;protein_id=WP_027703675.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2381702 2382124 . + . ID=gene-LLC55_RS11365;Name=LLC55_RS11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11365;old_locus_tag=LLC55_11370 NZ_CP086200.1 Protein Homology CDS 2381702 2382124 . + 0 ID=cds-WP_011409601.1;Parent=gene-LLC55_RS11365;Dbxref=Genbank:WP_011409601.1;Name=WP_011409601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912206.1;locus_tag=LLC55_RS11365;product=hypothetical protein;protein_id=WP_011409601.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2382200 2382634 . + . ID=gene-LLC55_RS11370;Name=LLC55_RS11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11370;old_locus_tag=LLC55_11375 NZ_CP086200.1 Protein Homology CDS 2382200 2382634 . + 0 ID=cds-WP_011260528.1;Parent=gene-LLC55_RS11370;Dbxref=Genbank:WP_011260528.1;Name=WP_011260528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156410.1;locus_tag=LLC55_RS11370;product=rhodanese-like domain-containing protein;protein_id=WP_011260528.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2382744 2383259 . + . ID=gene-LLC55_RS11375;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=LLC55_RS11375;old_locus_tag=LLC55_11380 NZ_CP086200.1 Protein Homology CDS 2382744 2383259 . + 0 ID=cds-WP_011260529.1;Parent=gene-LLC55_RS11375;Dbxref=Genbank:WP_011260529.1;Name=WP_011260529.1;gbkey=CDS;gene=secB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501523.1;locus_tag=LLC55_RS11375;product=protein-export chaperone SecB;protein_id=WP_011260529.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2383275 2384300 . + . ID=gene-LLC55_RS11380;Name=LLC55_RS11380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11380;old_locus_tag=LLC55_11385 NZ_CP086200.1 Protein Homology CDS 2383275 2384300 . + 0 ID=cds-WP_011409602.1;Parent=gene-LLC55_RS11380;Dbxref=Genbank:WP_011409602.1;Name=WP_011409602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035460.1;locus_tag=LLC55_RS11380;product=NAD(P)-dependent glycerol-3-phosphate dehydrogenase;protein_id=WP_011409602.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2384623 2385219 . - . ID=gene-LLC55_RS11385;Name=LLC55_RS11385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11385;old_locus_tag=LLC55_11390 NZ_CP086200.1 Protein Homology CDS 2384623 2385219 . - 0 ID=cds-WP_011260531.1;Parent=gene-LLC55_RS11385;Dbxref=Genbank:WP_011260531.1;Name=WP_011260531.1;Ontology_term=GO:0009372;gbkey=CDS;go_process=quorum sensing|0009372||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451122.1;locus_tag=LLC55_RS11385;product=Ax21 family protein;protein_id=WP_011260531.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2385595 2387304 . + . ID=gene-LLC55_RS11390;Name=poxB;gbkey=Gene;gene=poxB;gene_biotype=protein_coding;locus_tag=LLC55_RS11390;old_locus_tag=LLC55_11395 NZ_CP086200.1 Protein Homology CDS 2385595 2387304 . + 0 ID=cds-WP_178383456.1;Parent=gene-LLC55_RS11390;Dbxref=Genbank:WP_178383456.1;Name=WP_178383456.1;Ontology_term=GO:0006090,GO:0000287,GO:0030976,GO:0052737;gbkey=CDS;gene=poxB;go_function=magnesium ion binding|0000287||IEA,thiamine pyrophosphate binding|0030976||IEA,pyruvate dehydrogenase (quinone) activity|0052737||IEA;go_process=pyruvate metabolic process|0006090||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089006.1;locus_tag=LLC55_RS11390;product=ubiquinone-dependent pyruvate dehydrogenase;protein_id=WP_178383456.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2387354 2388796 . + . ID=gene-LLC55_RS11395;Name=LLC55_RS11395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11395;old_locus_tag=LLC55_11400 NZ_CP086200.1 Protein Homology CDS 2387354 2388796 . + 0 ID=cds-WP_011260533.1;Parent=gene-LLC55_RS11395;Dbxref=Genbank:WP_011260533.1;Name=WP_011260533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156414.1;locus_tag=LLC55_RS11395;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_011260533.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2388781 2390127 . + . ID=gene-LLC55_RS11400;Name=LLC55_RS11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11400;old_locus_tag=LLC55_11405 NZ_CP086200.1 Protein Homology CDS 2388781 2390127 . + 0 ID=cds-WP_011260534.1;Parent=gene-LLC55_RS11400;Dbxref=Genbank:WP_011260534.1;Name=WP_011260534.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966360.1;locus_tag=LLC55_RS11400;product=sigma-54 dependent transcriptional regulator;protein_id=WP_011260534.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2390318 2391067 . + . ID=gene-LLC55_RS11405;Name=LLC55_RS11405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11405;old_locus_tag=LLC55_11410 NZ_CP086200.1 Protein Homology CDS 2390318 2391067 . + 0 ID=cds-WP_011409603.1;Parent=gene-LLC55_RS11405;Dbxref=Genbank:WP_011409603.1;Name=WP_011409603.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501529.1;locus_tag=LLC55_RS11405;product=hypothetical protein;protein_id=WP_011409603.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2391169 2391780 . + . ID=gene-LLC55_RS11410;Name=LLC55_RS11410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11410;old_locus_tag=LLC55_11415 NZ_CP086200.1 Protein Homology CDS 2391169 2391780 . + 0 ID=cds-WP_011260536.1;Parent=gene-LLC55_RS11410;Dbxref=Genbank:WP_011260536.1;Name=WP_011260536.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966364.1;locus_tag=LLC55_RS11410;product=hypothetical protein;protein_id=WP_011260536.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2391885 2393108 . + . ID=gene-LLC55_RS11415;Name=LLC55_RS11415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11415;old_locus_tag=LLC55_11420 NZ_CP086200.1 Protein Homology CDS 2391885 2393108 . + 0 ID=cds-WP_011260537.1;Parent=gene-LLC55_RS11415;Dbxref=Genbank:WP_011260537.1;Name=WP_011260537.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501531.1;locus_tag=LLC55_RS11415;product=MFS transporter;protein_id=WP_011260537.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2393450 2393926 . - . ID=gene-LLC55_RS11420;Name=LLC55_RS11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11420;old_locus_tag=LLC55_11425 NZ_CP086200.1 Protein Homology CDS 2393450 2393926 . - 0 ID=cds-WP_011260538.1;Parent=gene-LLC55_RS11420;Dbxref=Genbank:WP_011260538.1;Name=WP_011260538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301073.1;locus_tag=LLC55_RS11420;product=tRNA (cytidine(34)-2'-O)-methyltransferase;protein_id=WP_011260538.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2393953 2394414 . - . ID=gene-LLC55_RS11425;Name=LLC55_RS11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11425;old_locus_tag=LLC55_11430 NZ_CP086200.1 Protein Homology CDS 2393953 2394414 . - 0 ID=cds-WP_011409604.1;Parent=gene-LLC55_RS11425;Dbxref=Genbank:WP_011409604.1;Name=WP_011409604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912218.1;locus_tag=LLC55_RS11425;product=hypothetical protein;protein_id=WP_011409604.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2394800 2395120 . + . ID=gene-LLC55_RS11430;Name=LLC55_RS11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11430;old_locus_tag=LLC55_11435 NZ_CP086200.1 Protein Homology CDS 2394800 2395120 . + 0 ID=cds-WP_010370565.1;Parent=gene-LLC55_RS11430;Dbxref=Genbank:WP_010370565.1;Name=WP_010370565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488921.1;locus_tag=LLC55_RS11430;product=DUF4156 domain-containing protein;protein_id=WP_010370565.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2395222 2396238 . + . ID=gene-LLC55_RS11435;Name=LLC55_RS11435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11435;old_locus_tag=LLC55_11440 NZ_CP086200.1 Protein Homology CDS 2395222 2396238 . + 0 ID=cds-WP_011260540.1;Parent=gene-LLC55_RS11435;Dbxref=Genbank:WP_011260540.1;Name=WP_011260540.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809874.1;locus_tag=LLC55_RS11435;product=3-oxoacyl-ACP synthase III;protein_id=WP_011260540.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2396310 2397473 . + . ID=gene-LLC55_RS11440;Name=LLC55_RS11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11440;old_locus_tag=LLC55_11445 NZ_CP086200.1 Protein Homology CDS 2396310 2397473 . + 0 ID=cds-WP_011260541.1;Parent=gene-LLC55_RS11440;Dbxref=Genbank:WP_011260541.1;Name=WP_011260541.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112724.1;locus_tag=LLC55_RS11440;product=Fic family protein;protein_id=WP_011260541.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2397470 2399101 . + . ID=gene-LLC55_RS11445;Name=LLC55_RS11445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11445;old_locus_tag=LLC55_11450 NZ_CP086200.1 Protein Homology CDS 2397470 2399101 . + 0 ID=cds-WP_011260542.1;Parent=gene-LLC55_RS11445;Dbxref=Genbank:WP_011260542.1;Name=WP_011260542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379854.1;locus_tag=LLC55_RS11445;product=site-specific DNA-methyltransferase;protein_id=WP_011260542.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2399109 2401604 . + . ID=gene-LLC55_RS11450;Name=LLC55_RS11450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11450;old_locus_tag=LLC55_11455 NZ_CP086200.1 Protein Homology CDS 2399109 2401604 . + 0 ID=cds-WP_011409605.1;Parent=gene-LLC55_RS11450;Dbxref=Genbank:WP_011409605.1;Name=WP_011409605.1;Ontology_term=GO:0003677,GO:0005524,GO:0016787;gbkey=CDS;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409605.1;locus_tag=LLC55_RS11450;product=DEAD/DEAH box helicase family protein;protein_id=WP_011409605.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2401601 2402503 . + . ID=gene-LLC55_RS11455;Name=LLC55_RS11455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11455;old_locus_tag=LLC55_11460 NZ_CP086200.1 Protein Homology CDS 2401601 2402503 . + 0 ID=cds-WP_011260544.1;Parent=gene-LLC55_RS11455;Dbxref=Genbank:WP_011260544.1;Name=WP_011260544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849672.1;locus_tag=LLC55_RS11455;product=alpha/beta fold hydrolase;protein_id=WP_011260544.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2402725 2403108 . - . ID=gene-LLC55_RS11460;Name=LLC55_RS11460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11460;old_locus_tag=LLC55_11465 NZ_CP086200.1 Protein Homology CDS 2402725 2403108 . - 0 ID=cds-WP_011409606.1;Parent=gene-LLC55_RS11460;Dbxref=Genbank:WP_011409606.1;Name=WP_011409606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849671.1;locus_tag=LLC55_RS11460;product=YkgJ family cysteine cluster protein;protein_id=WP_011409606.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2403427 2405097 . + . ID=gene-LLC55_RS11465;Name=LLC55_RS11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11465;old_locus_tag=LLC55_11470 NZ_CP086200.1 Protein Homology CDS 2403427 2405097 . + 0 ID=cds-WP_011260546.1;Parent=gene-LLC55_RS11465;Dbxref=Genbank:WP_011260546.1;Name=WP_011260546.1;Ontology_term=GO:0006631,GO:0031956;gbkey=CDS;go_function=medium-chain fatty acid-CoA ligase activity|0031956||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462752.1;locus_tag=LLC55_RS11465;product=fatty acid CoA ligase family protein;protein_id=WP_011260546.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2405326 2406336 . + . ID=gene-LLC55_RS11470;Name=LLC55_RS11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11470;old_locus_tag=LLC55_11475 NZ_CP086200.1 Protein Homology CDS 2405326 2406336 . + 0 ID=cds-WP_011409607.1;Parent=gene-LLC55_RS11470;Dbxref=Genbank:WP_011409607.1;Name=WP_011409607.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572201.1;locus_tag=LLC55_RS11470;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_011409607.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2406401 2406559 . + . ID=gene-LLC55_RS11475;Name=LLC55_RS11475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11475;old_locus_tag=LLC55_11480 NZ_CP086200.1 Protein Homology CDS 2406401 2406559 . + 0 ID=cds-WP_011260548.1;Parent=gene-LLC55_RS11475;Dbxref=Genbank:WP_011260548.1;Name=WP_011260548.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260548.1;locus_tag=LLC55_RS11475;product=DUF1328 domain-containing protein;protein_id=WP_011260548.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2406794 2408170 . + . ID=gene-LLC55_RS11480;Name=LLC55_RS11480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11480;old_locus_tag=LLC55_11485 NZ_CP086200.1 Protein Homology CDS 2406794 2408170 . + 0 ID=cds-WP_228329748.1;Parent=gene-LLC55_RS11480;Dbxref=Genbank:WP_228329748.1;Name=WP_228329748.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS11480;product=IS5 family transposase;protein_id=WP_228329748.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2408181 2408714 . - . ID=gene-LLC55_RS11485;Name=LLC55_RS11485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11485;old_locus_tag=LLC55_11490 NZ_CP086200.1 Protein Homology CDS 2408181 2408714 . - 0 ID=cds-WP_041182305.1;Parent=gene-LLC55_RS11485;Dbxref=Genbank:WP_041182305.1;Name=WP_041182305.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912782.1;locus_tag=LLC55_RS11485;product=MarR family transcriptional regulator;protein_id=WP_041182305.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2409143 2410402 . - . ID=gene-LLC55_RS11490;Name=LLC55_RS11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11490;old_locus_tag=LLC55_11495 NZ_CP086200.1 Protein Homology CDS 2409143 2410402 . - 0 ID=cds-WP_011409609.1;Parent=gene-LLC55_RS11490;Dbxref=Genbank:WP_011409609.1;Name=WP_011409609.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172339.1;locus_tag=LLC55_RS11490;product=HD-GYP domain-containing protein;protein_id=WP_011409609.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2410541 2411848 . - . ID=gene-LLC55_RS11495;Name=LLC55_RS11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11495;old_locus_tag=LLC55_11500 NZ_CP086200.1 Protein Homology CDS 2410541 2411848 . - 0 ID=cds-WP_011260552.1;Parent=gene-LLC55_RS11495;Dbxref=Genbank:WP_011260552.1;Name=WP_011260552.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117476.1;locus_tag=LLC55_RS11495;product=MFS transporter;protein_id=WP_011260552.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2412047 2412220 . + . ID=gene-LLC55_RS11500;Name=LLC55_RS11500;end_range=2412220,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11500;old_locus_tag=LLC55_11505;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2412047 2412220 . + 0 ID=cds-LLC55_RS11500;Parent=gene-LLC55_RS11500;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2412220,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LLC55_RS11500;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2412238 2413203 . - . ID=gene-LLC55_RS11505;Name=LLC55_RS11505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11505;old_locus_tag=LLC55_11510;pseudo=true NZ_CP086200.1 Protein Homology CDS 2412238 2413203 . - 0 ID=cds-LLC55_RS11505;Parent=gene-LLC55_RS11505;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS11505;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2413287 2413876 . + . ID=gene-LLC55_RS11510;Name=LLC55_RS11510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11510;old_locus_tag=LLC55_11515;partial=true;pseudo=true;start_range=.,2413287 NZ_CP086200.1 Protein Homology CDS 2413287 2413876 . + 0 ID=cds-LLC55_RS11510;Parent=gene-LLC55_RS11510;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS11510;partial=true;product=IS5 family transposase;pseudo=true;start_range=.,2413287;transl_table=11 NZ_CP086200.1 RefSeq gene 2413933 2414967 . + . ID=gene-LLC55_RS11515;Name=LLC55_RS11515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11515;old_locus_tag=LLC55_11520 NZ_CP086200.1 Protein Homology CDS 2413933 2414967 . + 0 ID=cds-WP_011407587.1-2;Parent=gene-LLC55_RS11515;Dbxref=Genbank:WP_011407587.1;Name=WP_011407587.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611268.1;locus_tag=LLC55_RS11515;product=IS630 family transposase;protein_id=WP_011407587.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2415318 2415863 . + . ID=gene-LLC55_RS11520;Name=LLC55_RS11520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11520;old_locus_tag=LLC55_11525 NZ_CP086200.1 Protein Homology CDS 2415318 2415863 . + 0 ID=cds-WP_011409611.1;Parent=gene-LLC55_RS11520;Dbxref=Genbank:WP_011409611.1;Name=WP_011409611.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304318.1;locus_tag=LLC55_RS11520;product=gamma carbonic anhydrase family protein;protein_id=WP_011409611.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2415889 2416155 . - . ID=gene-LLC55_RS11525;Name=LLC55_RS11525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11525;old_locus_tag=LLC55_11530 NZ_CP086200.1 Protein Homology CDS 2415889 2416155 . - 0 ID=cds-WP_011409612.1;Parent=gene-LLC55_RS11525;Dbxref=Genbank:WP_011409612.1;Name=WP_011409612.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035600.1;locus_tag=LLC55_RS11525;product=proteinase inhibitor;protein_id=WP_011409612.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2416330 2418168 . + . ID=gene-LLC55_RS11530;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=LLC55_RS11530;old_locus_tag=LLC55_11535 NZ_CP086200.1 Protein Homology CDS 2416330 2418168 . + 0 ID=cds-WP_011260556.1;Parent=gene-LLC55_RS11530;Dbxref=Genbank:WP_011260556.1;Name=WP_011260556.1;Ontology_term=GO:0009082,GO:0004160;gbkey=CDS;gene=ilvD;go_function=dihydroxy-acid dehydratase activity|0004160||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437115.1;locus_tag=LLC55_RS11530;product=dihydroxy-acid dehydratase;protein_id=WP_011260556.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2418399 2419274 . - . ID=gene-LLC55_RS11535;Name=LLC55_RS11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11535;old_locus_tag=LLC55_11540 NZ_CP086200.1 Protein Homology CDS 2418399 2419274 . - 0 ID=cds-WP_011260557.1;Parent=gene-LLC55_RS11535;Dbxref=Genbank:WP_011260557.1;Name=WP_011260557.1;Ontology_term=GO:0006310,GO:0009294,GO:0009009;gbkey=CDS;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA,DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300598.1;locus_tag=LLC55_RS11535;product=integron integrase;protein_id=WP_011260557.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2419358 2420733 . + . ID=gene-LLC55_RS11540;Name=LLC55_RS11540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11540;old_locus_tag=LLC55_11545;pseudo=true NZ_CP086200.1 Protein Homology CDS 2419358 2420733 . + 0 ID=cds-LLC55_RS11540;Parent=gene-LLC55_RS11540;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS11540;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2420760 2421995 . - . ID=gene-LLC55_RS11545;Name=LLC55_RS11545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11545;old_locus_tag=LLC55_11550 NZ_CP086200.1 Protein Homology CDS 2420760 2421995 . - 0 ID=cds-WP_228329728.1;Parent=gene-LLC55_RS11545;Dbxref=Genbank:WP_228329728.1;Name=WP_228329728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS11545;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_228329728.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2422081 2422257 . - . ID=gene-LLC55_RS11550;Name=LLC55_RS11550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11550;old_locus_tag=LLC55_11555;partial=true;pseudo=true;start_range=.,2422081 NZ_CP086200.1 Protein Homology CDS 2422081 2422257 . - 0 ID=cds-LLC55_RS11550;Parent=gene-LLC55_RS11550;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994023.1;locus_tag=LLC55_RS11550;partial=true;product=phage integrase N-terminal SAM-like domain-containing protein;pseudo=true;start_range=.,2422081;transl_table=11 NZ_CP086200.1 RefSeq gene 2422874 2423854 . - . ID=gene-LLC55_RS11555;Name=LLC55_RS11555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11555;old_locus_tag=LLC55_11560 NZ_CP086200.1 Protein Homology CDS 2422874 2423854 . - 0 ID=cds-WP_069964619.1;Parent=gene-LLC55_RS11555;Dbxref=Genbank:WP_069964619.1;Name=WP_069964619.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_022557821.1;locus_tag=LLC55_RS11555;product=IS5 family transposase;protein_id=WP_069964619.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2423919 2424632 . - . ID=gene-LLC55_RS11560;Name=LLC55_RS11560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11560;old_locus_tag=LLC55_11565;partial=true;pseudo=true;start_range=.,2423919 NZ_CP086200.1 Protein Homology CDS 2423919 2424632 . - 0 ID=cds-LLC55_RS11560;Parent=gene-LLC55_RS11560;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409255.1;locus_tag=LLC55_RS11560;partial=true;product=IS630 family transposase;pseudo=true;start_range=.,2423919;transl_table=11 NZ_CP086200.1 RefSeq gene 2424975 2425874 . + . ID=gene-LLC55_RS11565;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=LLC55_RS11565;old_locus_tag=LLC55_11570 NZ_CP086200.1 Protein Homology CDS 2424975 2425874 . + 0 ID=cds-WP_011260560.1;Parent=gene-LLC55_RS11565;Dbxref=Genbank:WP_011260560.1;Name=WP_011260560.1;Ontology_term=GO:0006779,GO:0004109;gbkey=CDS;gene=hemF;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967076.1;locus_tag=LLC55_RS11565;product=oxygen-dependent coproporphyrinogen oxidase;protein_id=WP_011260560.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2426822 2429623 . - . ID=gene-LLC55_RS11570;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=LLC55_RS11570;old_locus_tag=LLC55_11575 NZ_CP086200.1 Protein Homology CDS 2426822 2429623 . - 0 ID=cds-WP_044756337.1;Parent=gene-LLC55_RS11570;Dbxref=Genbank:WP_044756337.1;Name=WP_044756337.1;Ontology_term=GO:0006261,GO:0003676,GO:0003677,GO:0003887,GO:0008408;gbkey=CDS;gene=polA;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA-templated DNA replication|0006261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159421.1;locus_tag=LLC55_RS11570;product=DNA polymerase I;protein_id=WP_044756337.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2429700 2429990 . + . ID=gene-LLC55_RS11575;Name=LLC55_RS11575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11575;old_locus_tag=LLC55_11580 NZ_CP086200.1 Protein Homology CDS 2429700 2429990 . + 0 ID=cds-WP_069964620.1;Parent=gene-LLC55_RS11575;Dbxref=Genbank:WP_069964620.1;Name=WP_069964620.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914773.1;locus_tag=LLC55_RS11575;product=DUF2782 domain-containing protein;protein_id=WP_069964620.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2430348 2431389 . - . ID=gene-LLC55_RS11580;Name=LLC55_RS11580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11580;old_locus_tag=LLC55_11585;pseudo=true NZ_CP086200.1 Protein Homology CDS 2430348 2431389 . - 0 ID=cds-LLC55_RS11580;Parent=gene-LLC55_RS11580;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS11580;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2431555 2432289 . - . ID=gene-LLC55_RS11585;Name=LLC55_RS11585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11585;old_locus_tag=LLC55_11590 NZ_CP086200.1 GeneMarkS-2+ CDS 2431555 2432289 . - 0 ID=cds-WP_011409620.1;Parent=gene-LLC55_RS11585;Dbxref=Genbank:WP_011409620.1;Name=WP_011409620.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS11585;product=HIRAN domain-containing protein;protein_id=WP_011409620.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2432286 2433191 . - . ID=gene-LLC55_RS11590;Name=LLC55_RS11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11590;old_locus_tag=LLC55_11595 NZ_CP086200.1 GeneMarkS-2+ CDS 2432286 2433191 . - 0 ID=cds-WP_128415341.1;Parent=gene-LLC55_RS11590;Dbxref=Genbank:WP_128415341.1;Name=WP_128415341.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS11590;product=hypothetical protein;protein_id=WP_128415341.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2433381 2436068 . - . ID=gene-LLC55_RS11595;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=LLC55_RS11595;old_locus_tag=LLC55_11600 NZ_CP086200.1 Protein Homology CDS 2433381 2436068 . - 0 ID=cds-WP_014504812.1;Parent=gene-LLC55_RS11595;Dbxref=Genbank:WP_014504812.1;Name=WP_014504812.1;Ontology_term=GO:0006086,GO:0004738,GO:0045250;gbkey=CDS;gene=aceE;go_component=cytosolic pyruvate dehydrogenase complex|0045250||IEA;go_function=pyruvate dehydrogenase activity|0004738||IEA;go_process=acetyl-CoA biosynthetic process from pyruvate|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660853.1;locus_tag=LLC55_RS11595;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=WP_014504812.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2436552 2437550 . - . ID=gene-LLC55_RS11600;Name=LLC55_RS11600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11600;old_locus_tag=LLC55_11605;pseudo=true NZ_CP086200.1 Protein Homology CDS 2436552 2437550 . - 0 ID=cds-LLC55_RS11600;Parent=gene-LLC55_RS11600;Note=frameshifted;Ontology_term=GO:0015926;gbkey=CDS;go_function=glucosidase activity|0015926||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962641.1;locus_tag=LLC55_RS11600;product=glycosyl hydrolase 53 family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2437973 2439123 . - . ID=gene-LLC55_RS11605;Name=LLC55_RS11605;end_range=2439123,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11605;old_locus_tag=LLC55_11610;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2437973 2439123 . - 0 ID=cds-LLC55_RS11605;Parent=gene-LLC55_RS11605;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2439123,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158927.1;locus_tag=LLC55_RS11605;partial=true;product=lipase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2439126 2439254 . - . ID=gene-LLC55_RS23460;Name=LLC55_RS23460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23460 NZ_CP086200.1 GeneMarkS-2+ CDS 2439126 2439254 . - 0 ID=cds-WP_012443898.1;Parent=gene-LLC55_RS23460;Dbxref=Genbank:WP_012443898.1;Name=WP_012443898.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23460;product=hypothetical protein;protein_id=WP_012443898.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2439390 2443319 . + . ID=gene-LLC55_RS11610;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS11610;old_locus_tag=LLC55_11615 NZ_CP086200.1 Protein Homology CDS 2439390 2443319 . + 0 ID=cds-WP_228329729.1;Parent=gene-LLC55_RS11610;Dbxref=Genbank:WP_228329729.1;Name=WP_228329729.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS11610;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_228329729.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2443385 2443525 . - . ID=gene-LLC55_RS11615;Name=LLC55_RS11615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11615;old_locus_tag=LLC55_11620 NZ_CP086200.1 GeneMarkS-2+ CDS 2443385 2443525 . - 0 ID=cds-WP_155296185.1;Parent=gene-LLC55_RS11615;Dbxref=Genbank:WP_155296185.1;Name=WP_155296185.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS11615;product=hypothetical protein;protein_id=WP_155296185.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2443673 2445049 . + . ID=gene-LLC55_RS11620;Name=LLC55_RS11620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11620;old_locus_tag=LLC55_11625;pseudo=true NZ_CP086200.1 Protein Homology CDS 2443673 2445049 . + 0 ID=cds-LLC55_RS11620;Parent=gene-LLC55_RS11620;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS11620;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2445071 2445829 . - . ID=gene-LLC55_RS11625;Name=LLC55_RS11625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11625;old_locus_tag=LLC55_11630;partial=true;pseudo=true;start_range=.,2445071 NZ_CP086200.1 Protein Homology CDS 2445071 2445829 . - 0 ID=cds-LLC55_RS11625;Parent=gene-LLC55_RS11625;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_085938460.1;locus_tag=LLC55_RS11625;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,2445071;transl_table=11 NZ_CP086200.1 cmsearch sequence_feature 2445446 2445562 . - . ID=id-LLC55_RS11625;Dbxref=RFAM:RF01497;Note=AL1L pseudoknot;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11625;pseudo=true NZ_CP086200.1 RefSeq pseudogene 2445906 2446376 . - . ID=gene-LLC55_RS11630;Name=LLC55_RS11630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11630;old_locus_tag=LLC55_11635;partial=true;pseudo=true;start_range=.,2445906 NZ_CP086200.1 Protein Homology CDS 2445906 2446376 . - 0 ID=cds-LLC55_RS11630;Parent=gene-LLC55_RS11630;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155889.1;locus_tag=LLC55_RS11630;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2445906;transl_table=11 NZ_CP086200.1 RefSeq gene 2446594 2448600 . + . ID=gene-LLC55_RS11635;Name=LLC55_RS11635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11635;old_locus_tag=LLC55_11640 NZ_CP086200.1 Protein Homology CDS 2446594 2448600 . + 0 ID=cds-WP_011409630.1;Parent=gene-LLC55_RS11635;Dbxref=Genbank:WP_011409630.1;Name=WP_011409630.1;Ontology_term=GO:0016791;gbkey=CDS;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260578.1;locus_tag=LLC55_RS11635;product=SpoIIE family protein phosphatase;protein_id=WP_011409630.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2448597 2449028 . + . ID=gene-LLC55_RS11640;Name=LLC55_RS11640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11640;old_locus_tag=LLC55_11645 NZ_CP086200.1 Protein Homology CDS 2448597 2449028 . + 0 ID=cds-WP_012443890.1;Parent=gene-LLC55_RS11640;Dbxref=Genbank:WP_012443890.1;Name=WP_012443890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917392.1;locus_tag=LLC55_RS11640;product=ATP-binding protein;protein_id=WP_012443890.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2449025 2449444 . + . ID=gene-LLC55_RS11645;Name=LLC55_RS11645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11645;old_locus_tag=LLC55_11650 NZ_CP086200.1 Protein Homology CDS 2449025 2449444 . + 0 ID=cds-WP_011260579.1;Parent=gene-LLC55_RS11645;Dbxref=Genbank:WP_011260579.1;Name=WP_011260579.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483275.1;locus_tag=LLC55_RS11645;product=STAS domain-containing protein;protein_id=WP_011260579.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2449539 2449714 . + . ID=gene-LLC55_RS11650;Name=LLC55_RS11650;end_range=2449714,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11650;old_locus_tag=LLC55_11655;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2449539 2449714 . + 0 ID=cds-LLC55_RS11650;Parent=gene-LLC55_RS11650;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2449714,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155893.1;locus_tag=LLC55_RS11650;partial=true;product=HAD family hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2449930 2450688 . - . ID=gene-LLC55_RS11655;Name=LLC55_RS11655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11655;old_locus_tag=LLC55_11660 NZ_CP086200.1 Protein Homology CDS 2449930 2450688 . - 0 ID=cds-WP_075242263.1;Parent=gene-LLC55_RS11655;Dbxref=Genbank:WP_075242263.1;Name=WP_075242263.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929381.1;locus_tag=LLC55_RS11655;product=YceI family protein;protein_id=WP_075242263.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2450899 2451489 . - . ID=gene-LLC55_RS11660;Name=LLC55_RS11660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11660;old_locus_tag=LLC55_11665 NZ_CP086200.1 Protein Homology CDS 2450899 2451489 . - 0 ID=cds-WP_011260581.1;Parent=gene-LLC55_RS11660;Dbxref=Genbank:WP_011260581.1;Name=WP_011260581.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914114.1;locus_tag=LLC55_RS11660;product=malonic semialdehyde reductase;protein_id=WP_011260581.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2451623 2452570 . + . ID=gene-LLC55_RS11665;Name=LLC55_RS11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11665;old_locus_tag=LLC55_11670 NZ_CP086200.1 Protein Homology CDS 2451623 2452570 . + 0 ID=cds-WP_069964645.1;Parent=gene-LLC55_RS11665;Dbxref=Genbank:WP_069964645.1;Name=WP_069964645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260582.1;locus_tag=LLC55_RS11665;product=ELM1/GtrOC1 family putative glycosyltransferase;protein_id=WP_069964645.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2452636 2453469 . + . ID=gene-LLC55_RS11670;Name=LLC55_RS11670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11670;old_locus_tag=LLC55_11675 NZ_CP086200.1 Protein Homology CDS 2452636 2453469 . + 0 ID=cds-WP_228329730.1;Parent=gene-LLC55_RS11670;Dbxref=Genbank:WP_228329730.1;Name=WP_228329730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577092.1;locus_tag=LLC55_RS11670;product=DUF2145 domain-containing protein;protein_id=WP_228329730.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2453466 2453966 . + . ID=gene-LLC55_RS11675;Name=LLC55_RS11675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11675;old_locus_tag=LLC55_11680 NZ_CP086200.1 Protein Homology CDS 2453466 2453966 . + 0 ID=cds-WP_011409636.1;Parent=gene-LLC55_RS11675;Dbxref=Genbank:WP_011409636.1;Name=WP_011409636.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409636.1;locus_tag=LLC55_RS11675;product=hypothetical protein;protein_id=WP_011409636.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2454075 2456029 . - . ID=gene-LLC55_RS11680;Name=LLC55_RS11680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11680;old_locus_tag=LLC55_11685;pseudo=true NZ_CP086200.1 Protein Homology CDS 2454075 2456029 . - 0 ID=cds-LLC55_RS11680;Parent=gene-LLC55_RS11680;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050384.1;locus_tag=LLC55_RS11680;product=S53 family peptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2457065 2457625 . + . ID=gene-LLC55_RS11685;Name=LLC55_RS11685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11685;old_locus_tag=LLC55_11690 NZ_CP086200.1 Protein Homology CDS 2457065 2457625 . + 0 ID=cds-WP_011409640.1;Parent=gene-LLC55_RS11685;Dbxref=Genbank:WP_011409640.1;Name=WP_011409640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409640.1;locus_tag=LLC55_RS11685;product=VUT family protein;protein_id=WP_011409640.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2457721 2460546 . - . ID=gene-LLC55_RS11690;Name=glnE;gbkey=Gene;gene=glnE;gene_biotype=protein_coding;locus_tag=LLC55_RS11690;old_locus_tag=LLC55_11695 NZ_CP086200.1 Protein Homology CDS 2457721 2460546 . - 0 ID=cds-WP_011409641.1;Parent=gene-LLC55_RS11690;Dbxref=Genbank:WP_011409641.1;Name=WP_011409641.1;Ontology_term=GO:0008882;gbkey=CDS;gene=glnE;go_function=[glutamate-ammonia-ligase] adenylyltransferase activity|0008882||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929375.1;locus_tag=LLC55_RS11690;product=bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase;protein_id=WP_011409641.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2460708 2461226 . + . ID=gene-LLC55_RS11695;Name=LLC55_RS11695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11695;old_locus_tag=LLC55_11700 NZ_CP086200.1 Protein Homology CDS 2460708 2461226 . + 0 ID=cds-WP_011260589.1;Parent=gene-LLC55_RS11695;Dbxref=Genbank:WP_011260589.1;Name=WP_011260589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929373.1;locus_tag=LLC55_RS11695;product=hypothetical protein;protein_id=WP_011260589.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2461226 2462146 . + . ID=gene-LLC55_RS11700;Name=LLC55_RS11700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11700;old_locus_tag=LLC55_11705 NZ_CP086200.1 Protein Homology CDS 2461226 2462146 . + 0 ID=cds-WP_011409642.1;Parent=gene-LLC55_RS11700;Dbxref=Genbank:WP_011409642.1;Name=WP_011409642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929371.1;locus_tag=LLC55_RS11700;product=SMP-30/gluconolactonase/LRE family protein;protein_id=WP_011409642.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2462413 2464077 . - . ID=gene-LLC55_RS11705;Name=LLC55_RS11705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11705;old_locus_tag=LLC55_11710;pseudo=true NZ_CP086200.1 Protein Homology CDS 2462413 2464077 . - 0 ID=cds-LLC55_RS11705;Parent=gene-LLC55_RS11705;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160243.1;locus_tag=LLC55_RS11705;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2464171 2464977 . - . ID=gene-LLC55_RS11710;Name=LLC55_RS11710;end_range=2464977,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11710;old_locus_tag=LLC55_11715;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2464171 2464977 . - 0 ID=cds-LLC55_RS11710;Parent=gene-LLC55_RS11710;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2464977,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155919.1;locus_tag=LLC55_RS11710;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2465066 2466031 . + . ID=gene-LLC55_RS11715;Name=LLC55_RS11715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11715;old_locus_tag=LLC55_11720;pseudo=true NZ_CP086200.1 Protein Homology CDS 2465066 2466031 . + 0 ID=cds-LLC55_RS11715;Parent=gene-LLC55_RS11715;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS11715;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2466038 2467413 . - . ID=gene-LLC55_RS11720;Name=LLC55_RS11720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11720;old_locus_tag=LLC55_11725;partial=true;pseudo=true;start_range=.,2466038 NZ_CP086200.1 Protein Homology CDS 2466038 2467413 . - 0 ID=cds-LLC55_RS11720;Parent=gene-LLC55_RS11720;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155919.1;locus_tag=LLC55_RS11720;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2466038;transl_table=11 NZ_CP086200.1 RefSeq gene 2468001 2469074 . - . ID=gene-LLC55_RS11725;Name=LLC55_RS11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11725;old_locus_tag=LLC55_11730 NZ_CP086200.1 Protein Homology CDS 2468001 2469074 . - 0 ID=cds-WP_011260598.1;Parent=gene-LLC55_RS11725;Dbxref=Genbank:WP_011260598.1;Name=WP_011260598.1;Ontology_term=GO:0009423,GO:0003849;gbkey=CDS;go_function=3-deoxy-7-phosphoheptulonate synthase activity|0003849||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089228.1;locus_tag=LLC55_RS11725;product=3-deoxy-7-phosphoheptulonate synthase;protein_id=WP_011260598.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2469869 2469945 . + . ID=gene-LLC55_RS11730;Name=LLC55_RS11730;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS11730;old_locus_tag=LLC55_11735 NZ_CP086200.1 cmsearch ncRNA 2469869 2469945 . + . ID=rna-LLC55_RS11730;Parent=gene-LLC55_RS11730;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11730;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2469869 2469945 . + . ID=exon-LLC55_RS11730-1;Parent=rna-LLC55_RS11730;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11730;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 2469950 2472739 . - . ID=gene-LLC55_RS11735;Name=LLC55_RS11735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11735;old_locus_tag=LLC55_11740;pseudo=true NZ_CP086200.1 Protein Homology CDS 2469950 2472739 . - 0 ID=cds-LLC55_RS11735;Parent=gene-LLC55_RS11735;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237029.1;locus_tag=LLC55_RS11735;product=TonB-dependent receptor;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2473115 2475223 . + . ID=gene-LLC55_RS11740;Name=LLC55_RS11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11740;old_locus_tag=LLC55_11745 NZ_CP086200.1 Protein Homology CDS 2473115 2475223 . + 0 ID=cds-WP_069963910.1;Parent=gene-LLC55_RS11740;Dbxref=Genbank:WP_069963910.1;Name=WP_069963910.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260601.1;locus_tag=LLC55_RS11740;product=XopX family type III secretion system effector;protein_id=WP_069963910.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2475524 2477164 . - . ID=gene-LLC55_RS11745;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=LLC55_RS11745;old_locus_tag=LLC55_11750 NZ_CP086200.1 Protein Homology CDS 2475524 2477164 . - 0 ID=cds-WP_011260602.1;Parent=gene-LLC55_RS11745;Dbxref=Genbank:WP_011260602.1;Name=WP_011260602.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0006457,GO:0005515,GO:0016887;gbkey=CDS;gene=groL;go_function=protein binding|0005515||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411226.1;locus_tag=LLC55_RS11745;product=chaperonin GroEL;protein_id=WP_011260602.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2477301 2477588 . - . ID=gene-LLC55_RS11750;Name=LLC55_RS11750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11750;old_locus_tag=LLC55_11755 NZ_CP086200.1 Protein Homology CDS 2477301 2477588 . - 0 ID=cds-WP_003483210.1;Parent=gene-LLC55_RS11750;Dbxref=Genbank:WP_003483210.1;Name=WP_003483210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303525.1;locus_tag=LLC55_RS11750;product=co-chaperone GroES;protein_id=WP_003483210.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2477986 2478578 . - . ID=gene-LLC55_RS11755;Name=LLC55_RS11755;end_range=2478578,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11755;old_locus_tag=LLC55_11760;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2477986 2478578 . - 0 ID=cds-LLC55_RS11755;Parent=gene-LLC55_RS11755;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=2478578,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS11755;partial=true;product=IS4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2478637 2479461 . - . ID=gene-LLC55_RS11760;Name=LLC55_RS11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11760;old_locus_tag=LLC55_11765 NZ_CP086200.1 Protein Homology CDS 2478637 2479461 . - 0 ID=cds-WP_011260605.1;Parent=gene-LLC55_RS11760;Dbxref=Genbank:WP_011260605.1;Name=WP_011260605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463668.1;locus_tag=LLC55_RS11760;product=NYN domain-containing protein;protein_id=WP_011260605.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2479458 2479769 . - . ID=gene-LLC55_RS11765;Name=LLC55_RS11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11765;old_locus_tag=LLC55_11770 NZ_CP086200.1 Protein Homology CDS 2479458 2479769 . - 0 ID=cds-WP_075242340.1;Parent=gene-LLC55_RS11765;Dbxref=Genbank:WP_075242340.1;Name=WP_075242340.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260606.1;locus_tag=LLC55_RS11765;product=hypothetical protein;protein_id=WP_075242340.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2479815 2479979 . - . ID=gene-LLC55_RS11770;Name=LLC55_RS11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11770;old_locus_tag=LLC55_11775 NZ_CP086200.1 GeneMarkS-2+ CDS 2479815 2479979 . - 0 ID=cds-WP_155296186.1;Parent=gene-LLC55_RS11770;Dbxref=Genbank:WP_155296186.1;Name=WP_155296186.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS11770;product=hypothetical protein;protein_id=WP_155296186.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2480127 2481419 . + . ID=gene-LLC55_RS11775;Name=LLC55_RS11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11775;old_locus_tag=LLC55_11780 NZ_CP086200.1 Protein Homology CDS 2480127 2481419 . + 0 ID=cds-WP_041182316.1;Parent=gene-LLC55_RS11775;Dbxref=Genbank:WP_041182316.1;Name=WP_041182316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157036.1;locus_tag=LLC55_RS11775;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_041182316.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2481469 2482081 . + . ID=gene-LLC55_RS11780;Name=LLC55_RS11780;end_range=2482081,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11780;old_locus_tag=LLC55_11785;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2481469 2482081 . + 0 ID=cds-LLC55_RS11780;Parent=gene-LLC55_RS11780;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2482081,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017913975.1;locus_tag=LLC55_RS11780;partial=true;product=trimeric intracellular cation channel family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2482163 2483038 . - . ID=gene-LLC55_RS11785;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=LLC55_RS11785;old_locus_tag=LLC55_11790 NZ_CP086200.1 Protein Homology CDS 2482163 2483038 . - 0 ID=cds-WP_010370120.1;Parent=gene-LLC55_RS11785;Dbxref=Genbank:WP_010370120.1;Name=WP_010370120.1;Ontology_term=GO:0006352,GO:0016987;gbkey=CDS;gene=rpoH;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803651.1;locus_tag=LLC55_RS11785;product=RNA polymerase sigma factor RpoH;protein_id=WP_010370120.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2483237 2483962 . - . ID=gene-LLC55_RS11790;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=LLC55_RS11790;old_locus_tag=LLC55_11795 NZ_CP086200.1 Protein Homology CDS 2483237 2483962 . - 0 ID=cds-WP_011260610.1;Parent=gene-LLC55_RS11790;Dbxref=Genbank:WP_011260610.1;Name=WP_011260610.1;Ontology_term=GO:0006284,GO:0004844,GO:0016799;gbkey=CDS;gene=ung;go_function=uracil DNA N-glycosylase activity|0004844||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157034.1;locus_tag=LLC55_RS11790;product=uracil-DNA glycosylase;protein_id=WP_011260610.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2483959 2484801 . - . ID=gene-LLC55_RS11795;Name=LLC55_RS11795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11795;old_locus_tag=LLC55_11800 NZ_CP086200.1 Protein Homology CDS 2483959 2484801 . - 0 ID=cds-WP_011409653.1;Parent=gene-LLC55_RS11795;Dbxref=Genbank:WP_011409653.1;Name=WP_011409653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903686.1;locus_tag=LLC55_RS11795;product=response regulator;protein_id=WP_011409653.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2484810 2485760 . - . ID=gene-LLC55_RS11800;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=LLC55_RS11800;old_locus_tag=LLC55_11805 NZ_CP086200.1 Protein Homology CDS 2484810 2485760 . - 0 ID=cds-WP_011260612.1;Parent=gene-LLC55_RS11800;Dbxref=Genbank:WP_011260612.1;Name=WP_011260612.1;Ontology_term=GO:0000910;gbkey=CDS;gene=ftsX;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484495.1;locus_tag=LLC55_RS11800;product=permease-like cell division protein FtsX;protein_id=WP_011260612.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2485757 2486443 . - . ID=gene-LLC55_RS11805;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=LLC55_RS11805;old_locus_tag=LLC55_11810 NZ_CP086200.1 Protein Homology CDS 2485757 2486443 . - 0 ID=cds-WP_011409654.1;Parent=gene-LLC55_RS11805;Dbxref=Genbank:WP_011409654.1;Name=WP_011409654.1;Ontology_term=GO:0000910,GO:0006810,GO:0005524;gbkey=CDS;gene=ftsE;go_function=ATP binding|0005524||IEA;go_process=cytokinesis|0000910||IEA,transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484499.1;locus_tag=LLC55_RS11805;product=cell division ATP-binding protein FtsE;protein_id=WP_011409654.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2486519 2488243 . - . ID=gene-LLC55_RS11810;Name=rhlB;gbkey=Gene;gene=rhlB;gene_biotype=protein_coding;locus_tag=LLC55_RS11810;old_locus_tag=LLC55_11815 NZ_CP086200.1 Protein Homology CDS 2486519 2488243 . - 0 ID=cds-WP_011260614.1;Parent=gene-LLC55_RS11810;Dbxref=Genbank:WP_011260614.1;Name=WP_011260614.1;gbkey=CDS;gene=rhlB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157031.1;locus_tag=LLC55_RS11810;product=ATP-dependent RNA helicase RhlB;protein_id=WP_011260614.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2488442 2488783 . + . ID=gene-LLC55_RS11815;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=LLC55_RS11815;old_locus_tag=LLC55_11820 NZ_CP086200.1 Protein Homology CDS 2488442 2488783 . + 0 ID=cds-WP_011260615.1;Parent=gene-LLC55_RS11815;Dbxref=Genbank:WP_011260615.1;Name=WP_011260615.1;Ontology_term=GO:0006662,GO:0015035;gbkey=CDS;gene=trxA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=glycerol ether metabolic process|0006662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159364.1;locus_tag=LLC55_RS11815;product=thioredoxin TrxA;protein_id=WP_011260615.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2489000 2490889 . + . ID=gene-LLC55_RS11820;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=LLC55_RS11820;old_locus_tag=LLC55_11825 NZ_CP086200.1 Protein Homology CDS 2489000 2490889 . + 0 ID=cds-WP_012443863.1;Parent=gene-LLC55_RS11820;Dbxref=Genbank:WP_012443863.1;Name=WP_012443863.1;Ontology_term=GO:0006353,GO:0004386,GO:0008186;gbkey=CDS;gene=rho;go_function=helicase activity|0004386||IEA,ATP-dependent activity%2C acting on RNA|0008186||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171708.1;locus_tag=LLC55_RS11820;product=transcription termination factor Rho;protein_id=WP_012443863.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2491112 2492211 . - . ID=gene-LLC55_RS11825;Name=LLC55_RS11825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11825;old_locus_tag=LLC55_11830;pseudo=true NZ_CP086200.1 Protein Homology CDS 2491112 2492211 . - 0 ID=cds-LLC55_RS11825;Parent=gene-LLC55_RS11825;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS11825;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2492332 2493708 . - . ID=gene-LLC55_RS11830;Name=LLC55_RS11830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11830;old_locus_tag=LLC55_11835 NZ_CP086200.1 Protein Homology CDS 2492332 2493708 . - 0 ID=cds-WP_228329749.1;Parent=gene-LLC55_RS11830;Dbxref=Genbank:WP_228329749.1;Name=WP_228329749.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS11830;product=IS5-like element ISXo4 family transposase;protein_id=WP_228329749.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2493827 2493934 . - . ID=gene-LLC55_RS11835;Name=LLC55_RS11835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11835;old_locus_tag=LLC55_11840;partial=true;pseudo=true;start_range=.,2493827 NZ_CP086200.1 Protein Homology CDS 2493827 2493934 . - 0 ID=cds-LLC55_RS11835;Parent=gene-LLC55_RS11835;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS11835;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,2493827;transl_table=11 NZ_CP086200.1 RefSeq gene 2494023 2495804 . + . ID=gene-LLC55_RS11840;Name=LLC55_RS11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11840;old_locus_tag=LLC55_11845 NZ_CP086200.1 Protein Homology CDS 2494023 2495804 . + 0 ID=cds-WP_011409656.1;Parent=gene-LLC55_RS11840;Dbxref=Genbank:WP_011409656.1;Name=WP_011409656.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349065.1;locus_tag=LLC55_RS11840;product=autotransporter assembly complex protein TamA;protein_id=WP_011409656.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2495801 2499658 . + . ID=gene-LLC55_RS11845;Name=LLC55_RS11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11845;old_locus_tag=LLC55_11850 NZ_CP086200.1 Protein Homology CDS 2495801 2499658 . + 0 ID=cds-WP_012443859.1;Parent=gene-LLC55_RS11845;Dbxref=Genbank:WP_012443859.1;Name=WP_012443859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156059.1;locus_tag=LLC55_RS11845;product=translocation/assembly module TamB domain-containing protein;protein_id=WP_012443859.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2499708 2500740 . - . ID=gene-LLC55_RS11850;Name=LLC55_RS11850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11850;old_locus_tag=LLC55_11855;pseudo=true NZ_CP086200.1 Protein Homology CDS 2499708 2500740 . - 0 ID=cds-LLC55_RS11850;Parent=gene-LLC55_RS11850;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259143.1;locus_tag=LLC55_RS11850;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2500803 2500879 . - . ID=gene-LLC55_RS11855;Name=LLC55_RS11855;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS11855;old_locus_tag=LLC55_11860 NZ_CP086200.1 cmsearch ncRNA 2500803 2500879 . - . ID=rna-LLC55_RS11855;Parent=gene-LLC55_RS11855;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11855;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2500803 2500879 . - . ID=exon-LLC55_RS11855-1;Parent=rna-LLC55_RS11855;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11855;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2500994 2501431 . - . ID=gene-LLC55_RS11860;Name=LLC55_RS11860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11860;old_locus_tag=LLC55_11865 NZ_CP086200.1 Protein Homology CDS 2500994 2501431 . - 0 ID=cds-WP_011409659.1;Parent=gene-LLC55_RS11860;Dbxref=Genbank:WP_011409659.1;Name=WP_011409659.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850216.1;locus_tag=LLC55_RS11860;product=phosphotransferase;protein_id=WP_011409659.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2501418 2503787 . - . ID=gene-LLC55_RS11865;Name=LLC55_RS11865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11865;old_locus_tag=LLC55_11870 NZ_CP086200.1 Protein Homology CDS 2501418 2503787 . - 0 ID=cds-WP_042465789.1;Parent=gene-LLC55_RS11865;Dbxref=Genbank:WP_042465789.1;Name=WP_042465789.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926484.1;locus_tag=LLC55_RS11865;product=MMPL family transporter;protein_id=WP_042465789.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2503926 2504546 . - . ID=gene-LLC55_RS11870;Name=LLC55_RS11870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11870;old_locus_tag=LLC55_11875 NZ_CP086200.1 Protein Homology CDS 2503926 2504546 . - 0 ID=cds-WP_171970836.1;Parent=gene-LLC55_RS11870;Dbxref=Genbank:WP_171970836.1;Name=WP_171970836.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994991.1;locus_tag=LLC55_RS11870;product=fatty acyl CoA synthetase;protein_id=WP_171970836.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2504497 2505471 . - . ID=gene-LLC55_RS11875;Name=LLC55_RS11875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11875;old_locus_tag=LLC55_11880 NZ_CP086200.1 Protein Homology CDS 2504497 2505471 . - 0 ID=cds-WP_011260623.1;Parent=gene-LLC55_RS11875;Dbxref=Genbank:WP_011260623.1;Name=WP_011260623.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260623.1;locus_tag=LLC55_RS11875;product=acyltransferase;protein_id=WP_011260623.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2505468 2505695 . - . ID=gene-LLC55_RS11880;Name=LLC55_RS11880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11880;old_locus_tag=LLC55_11885 NZ_CP086200.1 Protein Homology CDS 2505468 2505695 . - 0 ID=cds-WP_228329590.1;Parent=gene-LLC55_RS11880;Dbxref=Genbank:WP_228329590.1;Name=WP_228329590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300741.1;locus_tag=LLC55_RS11880;product=hypothetical protein;protein_id=WP_228329590.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2505767 2506516 . - . ID=gene-LLC55_RS11885;Name=LLC55_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11885;old_locus_tag=LLC55_11890 NZ_CP086200.1 Protein Homology CDS 2505767 2506516 . - 0 ID=cds-WP_011409662.1;Parent=gene-LLC55_RS11885;Dbxref=Genbank:WP_011409662.1;Name=WP_011409662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348972.1;locus_tag=LLC55_RS11885;product=lysophospholipid acyltransferase family protein;protein_id=WP_011409662.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2506570 2507253 . - . ID=gene-LLC55_RS11890;Name=LLC55_RS11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11890;old_locus_tag=LLC55_11895 NZ_CP086200.1 Protein Homology CDS 2506570 2507253 . - 0 ID=cds-WP_080493953.1;Parent=gene-LLC55_RS11890;Dbxref=Genbank:WP_080493953.1;Name=WP_080493953.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443853.1;locus_tag=LLC55_RS11890;product=ketosynthase;protein_id=WP_080493953.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2507291 2507560 . - . ID=gene-LLC55_RS11895;Name=xanC;gbkey=Gene;gene=xanC;gene_biotype=protein_coding;locus_tag=LLC55_RS11895;old_locus_tag=LLC55_11900 NZ_CP086200.1 Protein Homology CDS 2507291 2507560 . - 0 ID=cds-WP_011260626.1;Parent=gene-LLC55_RS11895;Dbxref=Genbank:WP_011260626.1;Name=WP_011260626.1;gbkey=CDS;gene=xanC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300738.1;locus_tag=LLC55_RS11895;product=xanthomonadin biosynthesis acyl carrier protein XanC;protein_id=WP_011260626.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2507863 2509212 . + . ID=gene-LLC55_RS11900;Name=LLC55_RS11900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11900;old_locus_tag=LLC55_11905 NZ_CP086200.1 Protein Homology CDS 2507863 2509212 . + 0 ID=cds-WP_228329750.1;Parent=gene-LLC55_RS11900;Dbxref=Genbank:WP_228329750.1;Name=WP_228329750.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117708.1;locus_tag=LLC55_RS11900;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_228329750.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2509209 2510216 . + . ID=gene-LLC55_RS11905;Name=LLC55_RS11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11905;old_locus_tag=LLC55_11910 NZ_CP086200.1 Protein Homology CDS 2509209 2510216 . + 0 ID=cds-WP_011409665.1;Parent=gene-LLC55_RS11905;Dbxref=Genbank:WP_011409665.1;Name=WP_011409665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487396.1;locus_tag=LLC55_RS11905;product=pteridine-dependent deoxygenase like protein;protein_id=WP_011409665.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2510462 2511421 . - . ID=gene-LLC55_RS11910;Name=LLC55_RS11910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11910;old_locus_tag=LLC55_11915 NZ_CP086200.1 Protein Homology CDS 2510462 2511421 . - 0 ID=cds-WP_011409666.1;Parent=gene-LLC55_RS11910;Dbxref=Genbank:WP_011409666.1;Name=WP_011409666.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501625.1;locus_tag=LLC55_RS11910;product=5'-nucleotidase;protein_id=WP_011409666.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2511874 2513220 . - . ID=gene-LLC55_RS11915;Name=LLC55_RS11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11915;old_locus_tag=LLC55_11920 NZ_CP086200.1 Protein Homology CDS 2511874 2513220 . - 0 ID=cds-WP_041182320.1;Parent=gene-LLC55_RS11915;Dbxref=Genbank:WP_041182320.1;Name=WP_041182320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303711.1;locus_tag=LLC55_RS11915;product=AMP-binding protein;protein_id=WP_041182320.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2513966 2516326 . + . ID=gene-LLC55_RS11920;Name=LLC55_RS11920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11920;old_locus_tag=LLC55_11925 NZ_CP086200.1 Protein Homology CDS 2513966 2516326 . + 0 ID=cds-WP_012443849.1;Parent=gene-LLC55_RS11920;Dbxref=Genbank:WP_012443849.1;Name=WP_012443849.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809629.1;locus_tag=LLC55_RS11920;product=S9 family peptidase;protein_id=WP_012443849.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2516410 2516486 . - . ID=gene-LLC55_RS11925;Name=LLC55_RS11925;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS11925;old_locus_tag=LLC55_11930 NZ_CP086200.1 cmsearch ncRNA 2516410 2516486 . - . ID=rna-LLC55_RS11925;Parent=gene-LLC55_RS11925;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11925;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2516410 2516486 . - . ID=exon-LLC55_RS11925-1;Parent=rna-LLC55_RS11925;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11925;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2516726 2517490 . + . ID=gene-LLC55_RS11930;Name=LLC55_RS11930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11930;old_locus_tag=LLC55_11935 NZ_CP086200.1 Protein Homology CDS 2516726 2517490 . + 0 ID=cds-WP_228329591.1;Parent=gene-LLC55_RS11930;Dbxref=Genbank:WP_228329591.1;Name=WP_228329591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849294.1;locus_tag=LLC55_RS11930;product=hypothetical protein;protein_id=WP_228329591.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2517487 2518080 . + . ID=gene-LLC55_RS11935;Name=LLC55_RS11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11935;old_locus_tag=LLC55_11940 NZ_CP086200.1 Protein Homology CDS 2517487 2518080 . + 0 ID=cds-WP_011260633.1;Parent=gene-LLC55_RS11935;Dbxref=Genbank:WP_011260633.1;Name=WP_011260633.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260633.1;locus_tag=LLC55_RS11935;product=hypothetical protein;protein_id=WP_011260633.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2518495 2518956 . + . ID=gene-LLC55_RS11940;Name=LLC55_RS11940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11940;old_locus_tag=LLC55_11945 NZ_CP086200.1 Protein Homology CDS 2518495 2518956 . + 0 ID=cds-WP_011409668.1;Parent=gene-LLC55_RS11940;Dbxref=Genbank:WP_011409668.1;Name=WP_011409668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004153220.1;locus_tag=LLC55_RS11940;product=isoprenylcysteine carboxylmethyltransferase family protein;protein_id=WP_011409668.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2519174 2519605 . - . ID=gene-LLC55_RS11945;Name=LLC55_RS11945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11945;old_locus_tag=LLC55_11950 NZ_CP086200.1 Protein Homology CDS 2519174 2519605 . - 0 ID=cds-WP_011260634.1;Parent=gene-LLC55_RS11945;Dbxref=Genbank:WP_011260634.1;Name=WP_011260634.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505072.1;locus_tag=LLC55_RS11945;product=helix-turn-helix domain-containing protein;protein_id=WP_011260634.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2519741 2520619 . + . ID=gene-LLC55_RS11950;Name=LLC55_RS11950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11950;old_locus_tag=LLC55_11955 NZ_CP086200.1 Protein Homology CDS 2519741 2520619 . + 0 ID=cds-WP_011409669.1;Parent=gene-LLC55_RS11950;Dbxref=Genbank:WP_011409669.1;Name=WP_011409669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409669.1;locus_tag=LLC55_RS11950;product=SDR family oxidoreductase;protein_id=WP_011409669.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2521442 2522894 . + . ID=gene-LLC55_RS11955;Name=LLC55_RS11955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS11955;old_locus_tag=LLC55_11960;pseudo=true NZ_CP086200.1 Protein Homology CDS 2521442 2522894 . + 0 ID=cds-LLC55_RS11955;Parent=gene-LLC55_RS11955;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488991.1;locus_tag=LLC55_RS11955;product=OprO/OprP family phosphate-selective porin;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2523043 2523999 . + . ID=gene-LLC55_RS11960;Name=kdgT;gbkey=Gene;gene=kdgT;gene_biotype=protein_coding;locus_tag=LLC55_RS11960;old_locus_tag=LLC55_11965 NZ_CP086200.1 Protein Homology CDS 2523043 2523999 . + 0 ID=cds-WP_011260636.1;Parent=gene-LLC55_RS11960;Dbxref=Genbank:WP_011260636.1;Name=WP_011260636.1;Ontology_term=GO:0046411,GO:0015649;gbkey=CDS;gene=kdgT;go_function=2-keto-3-deoxygluconate:proton symporter activity|0015649||IEA;go_process=2-keto-3-deoxygluconate transmembrane transport|0046411||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260636.1;locus_tag=LLC55_RS11960;product=2-keto-3-deoxygluconate transporter;protein_id=WP_011260636.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2524206 2525234 . - . ID=gene-LLC55_RS11965;Name=LLC55_RS11965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11965;old_locus_tag=LLC55_11970 NZ_CP086200.1 Protein Homology CDS 2524206 2525234 . - 0 ID=cds-WP_011260637.1;Parent=gene-LLC55_RS11965;Dbxref=Genbank:WP_011260637.1;Name=WP_011260637.1;Ontology_term=GO:0009086,GO:0003871,GO:0008270;gbkey=CDS;go_function=5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|0003871||IEA,zinc ion binding|0008270||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369054.1;locus_tag=LLC55_RS11965;product=methionine synthase;protein_id=WP_011260637.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2525262 2526245 . - . ID=gene-LLC55_RS11970;Name=LLC55_RS11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11970;old_locus_tag=LLC55_11975 NZ_CP086200.1 Protein Homology CDS 2525262 2526245 . - 0 ID=cds-WP_011409672.1;Parent=gene-LLC55_RS11970;Dbxref=Genbank:WP_011409672.1;Name=WP_011409672.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089084.1;locus_tag=LLC55_RS11970;product=DUF1852 domain-containing protein;protein_id=WP_011409672.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2526388 2526981 . - . ID=gene-LLC55_RS11975;Name=msuE;gbkey=Gene;gene=msuE;gene_biotype=protein_coding;locus_tag=LLC55_RS11975;old_locus_tag=LLC55_11980 NZ_CP086200.1 Protein Homology CDS 2526388 2526981 . - 0 ID=cds-WP_011409673.1;Parent=gene-LLC55_RS11975;Dbxref=Genbank:WP_011409673.1;Name=WP_011409673.1;Ontology_term=GO:0016491;gbkey=CDS;gene=msuE;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574899.1;locus_tag=LLC55_RS11975;product=FMN reductase;protein_id=WP_011409673.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2527172 2528086 . + . ID=gene-LLC55_RS11980;Name=LLC55_RS11980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11980;old_locus_tag=LLC55_11985 NZ_CP086200.1 Protein Homology CDS 2527172 2528086 . + 0 ID=cds-WP_011409674.1;Parent=gene-LLC55_RS11980;Dbxref=Genbank:WP_011409674.1;Name=WP_011409674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089083.1;locus_tag=LLC55_RS11980;product=LysR family transcriptional regulator;protein_id=WP_011409674.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2528086 2528751 . + . ID=gene-LLC55_RS11985;Name=LLC55_RS11985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11985;old_locus_tag=LLC55_11990 NZ_CP086200.1 Protein Homology CDS 2528086 2528751 . + 0 ID=cds-WP_011260641.1;Parent=gene-LLC55_RS11985;Dbxref=Genbank:WP_011260641.1;Name=WP_011260641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346036.1;locus_tag=LLC55_RS11985;product=epoxyqueuosine reductase QueH;protein_id=WP_011260641.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2528756 2528832 . - . ID=gene-LLC55_RS11990;Name=LLC55_RS11990;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS11990;old_locus_tag=LLC55_11995 NZ_CP086200.1 cmsearch ncRNA 2528756 2528832 . - . ID=rna-LLC55_RS11990;Parent=gene-LLC55_RS11990;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11990;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2528756 2528832 . - . ID=exon-LLC55_RS11990-1;Parent=rna-LLC55_RS11990;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS11990;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2529021 2529905 . + . ID=gene-LLC55_RS11995;Name=LLC55_RS11995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS11995;old_locus_tag=LLC55_12000 NZ_CP086200.1 Protein Homology CDS 2529021 2529905 . + 0 ID=cds-WP_011409675.1;Parent=gene-LLC55_RS11995;Dbxref=Genbank:WP_011409675.1;Name=WP_011409675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574893.1;locus_tag=LLC55_RS11995;product=methylenetetrahydrofolate reductase;protein_id=WP_011409675.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2529931 2530562 . + . ID=gene-LLC55_RS12000;Name=LLC55_RS12000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12000;old_locus_tag=LLC55_12005;partial=true;pseudo=true;start_range=.,2529931 NZ_CP086200.1 Protein Homology CDS 2529931 2530562 . + 0 ID=cds-LLC55_RS12000;Parent=gene-LLC55_RS12000;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346030.1;locus_tag=LLC55_RS12000;partial=true;product=ATP-binding protein;pseudo=true;start_range=.,2529931;transl_table=11 NZ_CP086200.1 RefSeq gene 2530595 2531302 . + . ID=gene-LLC55_RS12005;Name=LLC55_RS12005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12005;old_locus_tag=LLC55_12010 NZ_CP086200.1 Protein Homology CDS 2530595 2531302 . + 0 ID=cds-WP_011409677.1;Parent=gene-LLC55_RS12005;Dbxref=Genbank:WP_011409677.1;Name=WP_011409677.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505080.1;locus_tag=LLC55_RS12005;product=response regulator;protein_id=WP_011409677.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2531381 2532232 . - . ID=gene-LLC55_RS12010;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=LLC55_RS12010;old_locus_tag=LLC55_12015 NZ_CP086200.1 Protein Homology CDS 2531381 2532232 . - 0 ID=cds-WP_011409678.1;Parent=gene-LLC55_RS12010;Dbxref=Genbank:WP_011409678.1;Name=WP_011409678.1;Ontology_term=GO:0009152,GO:0008864;gbkey=CDS;gene=purU;go_function=formyltetrahydrofolate deformylase activity|0008864||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237160.1;locus_tag=LLC55_RS12010;product=formyltetrahydrofolate deformylase;protein_id=WP_011409678.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2532454 2532843 . - . ID=gene-LLC55_RS12015;Name=LLC55_RS12015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12015;old_locus_tag=LLC55_12020;partial=true;pseudo=true;start_range=.,2532454 NZ_CP086200.1 Protein Homology CDS 2532454 2532843 . - 0 ID=cds-LLC55_RS12015;Parent=gene-LLC55_RS12015;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304344.1;locus_tag=LLC55_RS12015;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2532454;transl_table=11 NZ_CP086200.1 RefSeq gene 2533039 2533112 . - . ID=gene-LLC55_RS12020;Name=LLC55_RS12020;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS12020;old_locus_tag=LLC55_12025 NZ_CP086200.1 cmsearch ncRNA 2533039 2533112 . - . ID=rna-LLC55_RS12020;Parent=gene-LLC55_RS12020;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12020;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2533039 2533112 . - . ID=exon-LLC55_RS12020-1;Parent=rna-LLC55_RS12020;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12020;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2533096 2533171 . + . ID=gene-LLC55_RS12025;Name=LLC55_RS12025;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS12025;old_locus_tag=LLC55_12030 NZ_CP086200.1 cmsearch ncRNA 2533096 2533171 . + . ID=rna-LLC55_RS12025;Parent=gene-LLC55_RS12025;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12025;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2533096 2533171 . + . ID=exon-LLC55_RS12025-1;Parent=rna-LLC55_RS12025;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12025;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2533195 2534073 . - . ID=gene-LLC55_RS12030;Name=LLC55_RS12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12030;old_locus_tag=LLC55_12035 NZ_CP086200.1 Protein Homology CDS 2533195 2534073 . - 0 ID=cds-WP_011260646.1;Parent=gene-LLC55_RS12030;Dbxref=Genbank:WP_011260646.1;Name=WP_011260646.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304345.1;locus_tag=LLC55_RS12030;product=NAD(P)-dependent oxidoreductase;protein_id=WP_011260646.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2534111 2535229 . - . ID=gene-LLC55_RS12035;Name=LLC55_RS12035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12035;old_locus_tag=LLC55_12040 NZ_CP086200.1 Protein Homology CDS 2534111 2535229 . - 0 ID=cds-WP_011260647.1;Parent=gene-LLC55_RS12035;Dbxref=Genbank:WP_011260647.1;Name=WP_011260647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302131.1;locus_tag=LLC55_RS12035;product=NADH:flavin oxidoreductase/NADH oxidase;protein_id=WP_011260647.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2535288 2536169 . - . ID=gene-LLC55_RS12040;Name=LLC55_RS12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12040;old_locus_tag=LLC55_12045 NZ_CP086200.1 Protein Homology CDS 2535288 2536169 . - 0 ID=cds-WP_011260648.1;Parent=gene-LLC55_RS12040;Dbxref=Genbank:WP_011260648.1;Name=WP_011260648.1;Ontology_term=GO:0070403;gbkey=CDS;go_function=NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920008.1;locus_tag=LLC55_RS12040;product=NAD-dependent protein deacetylase;protein_id=WP_011260648.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2536625 2536998 . + . ID=gene-LLC55_RS12045;Name=LLC55_RS12045;end_range=2536998,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12045;old_locus_tag=LLC55_12050;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2536625 2536998 . + 0 ID=cds-LLC55_RS12045;Parent=gene-LLC55_RS12045;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2536998,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160393.1;locus_tag=LLC55_RS12045;partial=true;product=MerR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2537063 2538349 . - . ID=gene-LLC55_RS12050;Name=LLC55_RS12050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12050;old_locus_tag=LLC55_12055 NZ_CP086200.1 Protein Homology CDS 2537063 2538349 . - 0 ID=cds-WP_041182322.1;Parent=gene-LLC55_RS12050;Dbxref=Genbank:WP_041182322.1;Name=WP_041182322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471612.1;locus_tag=LLC55_RS12050;product=MFS transporter;protein_id=WP_041182322.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2538446 2539333 . + . ID=gene-LLC55_RS12055;Name=LLC55_RS12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12055;old_locus_tag=LLC55_12060 NZ_CP086200.1 Protein Homology CDS 2538446 2539333 . + 0 ID=cds-WP_011260651.1;Parent=gene-LLC55_RS12055;Dbxref=Genbank:WP_011260651.1;Name=WP_011260651.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167667.1;locus_tag=LLC55_RS12055;product=LysR family transcriptional regulator;protein_id=WP_011260651.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2539813 2540066 . + . ID=gene-LLC55_RS12060;Name=LLC55_RS12060;end_range=2540066,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12060;old_locus_tag=LLC55_12065;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2539813 2540066 . + 0 ID=cds-LLC55_RS12060;Parent=gene-LLC55_RS12060;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2540066,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848809.1;locus_tag=LLC55_RS12060;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2540133 2540208 . + . ID=gene-LLC55_RS12065;Name=LLC55_RS12065;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS12065;old_locus_tag=LLC55_12070 NZ_CP086200.1 cmsearch ncRNA 2540133 2540208 . + . ID=rna-LLC55_RS12065;Parent=gene-LLC55_RS12065;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12065;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2540133 2540208 . + . ID=exon-LLC55_RS12065-1;Parent=rna-LLC55_RS12065;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12065;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2540203 2541015 . - . ID=gene-LLC55_RS12070;Name=LLC55_RS12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12070;old_locus_tag=LLC55_12075 NZ_CP086200.1 Protein Homology CDS 2540203 2541015 . - 0 ID=cds-WP_011409682.1;Parent=gene-LLC55_RS12070;Dbxref=Genbank:WP_011409682.1;Name=WP_011409682.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409682.1;locus_tag=LLC55_RS12070;product=TatD family hydrolase;protein_id=WP_011409682.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2541437 2541895 . + . ID=gene-LLC55_RS12075;Name=LLC55_RS12075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12075;old_locus_tag=LLC55_12080 NZ_CP086200.1 Protein Homology CDS 2541437 2541895 . + 0 ID=cds-WP_012443823.1;Parent=gene-LLC55_RS12075;Dbxref=Genbank:WP_012443823.1;Name=WP_012443823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968357.1;locus_tag=LLC55_RS12075;product=hypothetical protein;protein_id=WP_012443823.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2541955 2542033 . + . ID=gene-LLC55_RS12080;Name=LLC55_RS12080;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS12080;old_locus_tag=LLC55_12085 NZ_CP086200.1 cmsearch ncRNA 2541955 2542033 . + . ID=rna-LLC55_RS12080;Parent=gene-LLC55_RS12080;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12080;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2541955 2542033 . + . ID=exon-LLC55_RS12080-1;Parent=rna-LLC55_RS12080;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12080;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2542074 2544581 . - . ID=gene-LLC55_RS12085;Name=LLC55_RS12085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12085;old_locus_tag=LLC55_12090 NZ_CP086200.1 Protein Homology CDS 2542074 2544581 . - 0 ID=cds-WP_011260655.1;Parent=gene-LLC55_RS12085;Dbxref=Genbank:WP_011260655.1;Name=WP_011260655.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505094.1;locus_tag=LLC55_RS12085;product=prolyl oligopeptidase family serine peptidase;protein_id=WP_011260655.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2544693 2545013 . - . ID=gene-LLC55_RS12090;Name=LLC55_RS12090;end_range=2545013,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12090;old_locus_tag=LLC55_12095;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2544693 2545013 . - 0 ID=cds-LLC55_RS12090;Parent=gene-LLC55_RS12090;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2545013,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156071.1;locus_tag=LLC55_RS12090;partial=true;product=alpha/beta fold hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2545084 2546049 . - . ID=gene-LLC55_RS12095;Name=LLC55_RS12095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12095;old_locus_tag=LLC55_12100 NZ_CP086200.1 Protein Homology CDS 2545084 2546049 . - 0 ID=cds-WP_109182036.1;Parent=gene-LLC55_RS12095;Dbxref=Genbank:WP_109182036.1;Name=WP_109182036.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS12095;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182036.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2546327 2546575 . + . ID=gene-LLC55_RS12100;Name=LLC55_RS12100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12100;old_locus_tag=LLC55_12105;partial=true;pseudo=true;start_range=.,2546327 NZ_CP086200.1 Protein Homology CDS 2546327 2546575 . + 0 ID=cds-LLC55_RS12100;Parent=gene-LLC55_RS12100;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975014.1;locus_tag=LLC55_RS12100;partial=true;product=LysR family transcriptional regulator;pseudo=true;start_range=.,2546327;transl_table=11 NZ_CP086200.1 RefSeq gene 2546618 2547381 . + . ID=gene-LLC55_RS12105;Name=LLC55_RS12105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12105;old_locus_tag=LLC55_12110 NZ_CP086200.1 Protein Homology CDS 2546618 2546933 . + 0 ID=cds-WP_094187715.1-5;Parent=gene-LLC55_RS12105;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS12105;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2546933 2547381 . + 2 ID=cds-WP_094187715.1-5;Parent=gene-LLC55_RS12105;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS12105;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2547443 2548474 . + . ID=gene-LLC55_RS12110;Name=LLC55_RS12110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12110;old_locus_tag=LLC55_12115 NZ_CP086200.1 Protein Homology CDS 2547443 2548474 . + 0 ID=cds-WP_011260659.1;Parent=gene-LLC55_RS12110;Dbxref=Genbank:WP_011260659.1;Name=WP_011260659.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260659.1;locus_tag=LLC55_RS12110;product=IS630 family transposase;protein_id=WP_011260659.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2548639 2549845 . + . ID=gene-LLC55_RS12115;Name=LLC55_RS12115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12115;old_locus_tag=LLC55_12120;pseudo=true NZ_CP086200.1 Protein Homology CDS 2548639 2549845 . + 0 ID=cds-LLC55_RS12115;Parent=gene-LLC55_RS12115;Note=frameshifted%3B internal stop;Ontology_term=GO:0016813;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amidines|0016813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167651.1;locus_tag=LLC55_RS12115;product=allantoate amidohydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2549835 2551091 . + . ID=gene-LLC55_RS12120;Name=LLC55_RS12120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12120;old_locus_tag=LLC55_12125 NZ_CP086200.1 Protein Homology CDS 2549835 2551091 . + 0 ID=cds-WP_011260660.1;Parent=gene-LLC55_RS12120;Dbxref=Genbank:WP_011260660.1;Name=WP_011260660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379922.1;locus_tag=LLC55_RS12120;product=alanine--glyoxylate aminotransferase family protein;protein_id=WP_011260660.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2551088 2551978 . + . ID=gene-LLC55_RS12125;Name=puuE;gbkey=Gene;gene=puuE;gene_biotype=protein_coding;locus_tag=LLC55_RS12125;old_locus_tag=LLC55_12130 NZ_CP086200.1 Protein Homology CDS 2551088 2551978 . + 0 ID=cds-WP_011260661.1;Parent=gene-LLC55_RS12125;Dbxref=Genbank:WP_011260661.1;Name=WP_011260661.1;Ontology_term=GO:0000256,GO:0016810;gbkey=CDS;gene=puuE;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=allantoin catabolic process|0000256||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156075.1;locus_tag=LLC55_RS12125;product=allantoinase PuuE;protein_id=WP_011260661.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2551975 2552370 . + . ID=gene-LLC55_RS12130;Name=LLC55_RS12130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12130;old_locus_tag=LLC55_12135 NZ_CP086200.1 Protein Homology CDS 2551975 2552370 . + 0 ID=cds-WP_012443820.1;Parent=gene-LLC55_RS12130;Dbxref=Genbank:WP_012443820.1;Name=WP_012443820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450976.1;locus_tag=LLC55_RS12130;product=DUF3225 domain-containing protein;protein_id=WP_012443820.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2552318 2552854 . + . ID=gene-LLC55_RS12135;Name=uraD;end_range=2552854,.;gbkey=Gene;gene=uraD;gene_biotype=pseudogene;locus_tag=LLC55_RS12135;old_locus_tag=LLC55_12140;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2552318 2552854 . + 0 ID=cds-LLC55_RS12135;Parent=gene-LLC55_RS12135;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0019628;end_range=2552854,.;gbkey=CDS;gene=uraD;go_process=urate catabolic process|0019628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572333.1;locus_tag=LLC55_RS12135;partial=true;product=2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2552854 2553270 . + . ID=gene-LLC55_RS12140;Name=LLC55_RS12140;end_range=2553270,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12140;old_locus_tag=LLC55_12145;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2552854 2553270 . + 0 ID=cds-LLC55_RS12140;Parent=gene-LLC55_RS12140;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2553270,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509374.1;locus_tag=LLC55_RS12140;partial=true;product=FAD/NAD(P)-binding protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2553283 2553630 . + . ID=gene-LLC55_RS12145;Name=uraH;end_range=2553630,.;gbkey=Gene;gene=uraH;gene_biotype=pseudogene;locus_tag=LLC55_RS12145;old_locus_tag=LLC55_12150;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2553283 2553630 . + 0 ID=cds-LLC55_RS12145;Parent=gene-LLC55_RS12145;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0019628;end_range=2553630,.;gbkey=CDS;gene=uraH;go_process=urate catabolic process|0019628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370375.1;locus_tag=LLC55_RS12145;partial=true;product=hydroxyisourate hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2553714 2555032 . - . ID=gene-LLC55_RS12150;Name=LLC55_RS12150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12150;old_locus_tag=LLC55_12155;pseudo=true NZ_CP086200.1 Protein Homology CDS 2553714 2555032 . - 0 ID=cds-LLC55_RS12150;Parent=gene-LLC55_RS12150;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS12150;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2555158 2555274 . + . ID=gene-LLC55_RS12155;Name=LLC55_RS12155;end_range=2555274,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12155;old_locus_tag=LLC55_12160;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2555158 2555274 . + 0 ID=cds-LLC55_RS12155;Parent=gene-LLC55_RS12155;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2555274,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502513.1;locus_tag=LLC55_RS12155;partial=true;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2555295 2555852 . - . ID=gene-LLC55_RS12160;Name=LLC55_RS12160;end_range=2555852,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12160;old_locus_tag=LLC55_12165;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2555295 2555852 . - 0 ID=cds-LLC55_RS12160;Parent=gene-LLC55_RS12160;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2555852,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS12160;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2555851 2556033 . + . ID=gene-LLC55_RS12165;Name=LLC55_RS12165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12165;old_locus_tag=LLC55_12170;partial=true;pseudo=true;start_range=.,2555851 NZ_CP086200.1 Protein Homology CDS 2555851 2556033 . + 0 ID=cds-LLC55_RS12165;Parent=gene-LLC55_RS12165;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445996.1;locus_tag=LLC55_RS12165;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2555851;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2556331 2557370 . - . ID=gene-LLC55_RS12170;Name=LLC55_RS12170;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12170;old_locus_tag=LLC55_12175;pseudo=true NZ_CP086200.1 Protein Homology CDS 2556331 2557370 . - 0 ID=cds-LLC55_RS12170;Parent=gene-LLC55_RS12170;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS12170;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2557501 2557668 . + . ID=gene-LLC55_RS12175;Name=LLC55_RS12175;end_range=2557668,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12175;old_locus_tag=LLC55_12180;partial=true;pseudo=true;start_range=.,2557501 NZ_CP086200.1 Protein Homology CDS 2557501 2557668 . + 0 ID=cds-LLC55_RS12175;Parent=gene-LLC55_RS12175;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2557668,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS12175;partial=true;product=transposase;pseudo=true;start_range=.,2557501;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2557730 2558475 . - . ID=gene-LLC55_RS12180;Name=LLC55_RS12180;end_range=2558475,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12180;old_locus_tag=LLC55_12185;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2557730 2558475 . - 0 ID=cds-LLC55_RS12180;Parent=gene-LLC55_RS12180;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2558475,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015648155.1%2CRefSeq:WP_076611322.1;locus_tag=LLC55_RS12180;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2558515 2559531 . + . ID=gene-LLC55_RS12185;Name=LLC55_RS12185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12185;old_locus_tag=LLC55_12190;pseudo=true NZ_CP086200.1 Protein Homology CDS 2558515 2559531 . + 0 ID=cds-LLC55_RS12185;Parent=gene-LLC55_RS12185;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011229360.1;locus_tag=LLC55_RS12185;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2559818 2561902 . - . ID=gene-LLC55_RS12190;Name=LLC55_RS12190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12190;old_locus_tag=LLC55_12195 NZ_CP086200.1 Protein Homology CDS 2559818 2561902 . - 0 ID=cds-WP_011260667.1;Parent=gene-LLC55_RS12190;Dbxref=Genbank:WP_011260667.1;Name=WP_011260667.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572258.1;locus_tag=LLC55_RS12190;product=S9 family peptidase;protein_id=WP_011260667.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2562002 2564029 . - . ID=gene-LLC55_RS12195;Name=LLC55_RS12195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12195;old_locus_tag=LLC55_12200 NZ_CP086200.1 Protein Homology CDS 2562002 2564029 . - 0 ID=cds-WP_011260668.1;Parent=gene-LLC55_RS12195;Dbxref=Genbank:WP_011260668.1;Name=WP_011260668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089033.1;locus_tag=LLC55_RS12195;product=acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha;protein_id=WP_011260668.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2564272 2565882 . - . ID=gene-LLC55_RS12200;Name=LLC55_RS12200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12200;old_locus_tag=LLC55_12205 NZ_CP086200.1 Protein Homology CDS 2564272 2565882 . - 0 ID=cds-WP_011260669.1;Parent=gene-LLC55_RS12200;Dbxref=Genbank:WP_011260669.1;Name=WP_011260669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437049.1;locus_tag=LLC55_RS12200;product=methylcrotonoyl-CoA carboxylase;protein_id=WP_011260669.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2565893 2567056 . - . ID=gene-LLC55_RS12205;Name=LLC55_RS12205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12205;old_locus_tag=LLC55_12210 NZ_CP086200.1 Protein Homology CDS 2565893 2567056 . - 0 ID=cds-WP_011260670.1;Parent=gene-LLC55_RS12205;Dbxref=Genbank:WP_011260670.1;Name=WP_011260670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450091.1;locus_tag=LLC55_RS12205;product=isovaleryl-CoA dehydrogenase;protein_id=WP_011260670.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2567185 2567805 . + . ID=gene-LLC55_RS12210;Name=LLC55_RS12210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12210;old_locus_tag=LLC55_12215 NZ_CP086200.1 Protein Homology CDS 2567185 2567805 . + 0 ID=cds-WP_011409694.1;Parent=gene-LLC55_RS12210;Dbxref=Genbank:WP_011409694.1;Name=WP_011409694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921138.1;locus_tag=LLC55_RS12210;product=TetR/AcrR family transcriptional regulator;protein_id=WP_011409694.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2567848 2568046 . + . ID=gene-LLC55_RS12215;Name=LLC55_RS12215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12215;old_locus_tag=LLC55_12220;partial=true;pseudo=true;start_range=.,2567848 NZ_CP086200.1 Protein Homology CDS 2567848 2568046 . + 0 ID=cds-LLC55_RS12215;Parent=gene-LLC55_RS12215;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050204.1;locus_tag=LLC55_RS12215;partial=true;product=RES domain-containing protein;pseudo=true;start_range=.,2567848;transl_table=11 NZ_CP086200.1 RefSeq gene 2568136 2568324 . - . ID=gene-LLC55_RS12220;Name=LLC55_RS12220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12220;old_locus_tag=LLC55_12225 NZ_CP086200.1 GeneMarkS-2+ CDS 2568136 2568324 . - 0 ID=cds-WP_012443812.1;Parent=gene-LLC55_RS12220;Dbxref=Genbank:WP_012443812.1;Name=WP_012443812.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS12220;product=hypothetical protein;protein_id=WP_012443812.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2568367 2568702 . - . ID=gene-LLC55_RS12225;Name=LLC55_RS12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12225;old_locus_tag=LLC55_12230 NZ_CP086200.1 Protein Homology CDS 2568367 2568702 . - 0 ID=cds-WP_011260672.1;Parent=gene-LLC55_RS12225;Dbxref=Genbank:WP_011260672.1;Name=WP_011260672.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156920.1;locus_tag=LLC55_RS12225;product=DUF3325 domain-containing protein;protein_id=WP_011260672.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2568699 2570330 . - . ID=gene-LLC55_RS12230;Name=LLC55_RS12230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12230;old_locus_tag=LLC55_12235;pseudo=true NZ_CP086200.1 Protein Homology CDS 2568699 2570330 . - 0 ID=cds-LLC55_RS12230;Parent=gene-LLC55_RS12230;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156921.1;locus_tag=LLC55_RS12230;product=PepSY-associated TM helix domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2570327 2570638 . - . ID=gene-LLC55_RS12235;Name=LLC55_RS12235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12235;old_locus_tag=LLC55_12240 NZ_CP086200.1 Protein Homology CDS 2570327 2570638 . - 0 ID=cds-WP_075242289.1;Parent=gene-LLC55_RS12235;Dbxref=Genbank:WP_075242289.1;Name=WP_075242289.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112733.1;locus_tag=LLC55_RS12235;product=DUF3649 domain-containing protein;protein_id=WP_075242289.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2570835 2571465 . - . ID=gene-LLC55_RS12240;Name=LLC55_RS12240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12240;old_locus_tag=LLC55_12245;partial=true;pseudo=true;start_range=.,2570835 NZ_CP086200.1 Protein Homology CDS 2570835 2571465 . - 0 ID=cds-LLC55_RS12240;Parent=gene-LLC55_RS12240;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450084.1;locus_tag=LLC55_RS12240;partial=true;product=DUF4198 domain-containing protein;pseudo=true;start_range=.,2570835;transl_table=11 NZ_CP086200.1 RefSeq gene 2571757 2572275 . + . ID=gene-LLC55_RS12245;Name=LLC55_RS12245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12245;old_locus_tag=LLC55_12250 NZ_CP086200.1 Protein Homology CDS 2571757 2572275 . + 0 ID=cds-WP_011409699.1;Parent=gene-LLC55_RS12245;Dbxref=Genbank:WP_011409699.1;Name=WP_011409699.1;Ontology_term=GO:0009055,GO:0020037;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921137.1;locus_tag=LLC55_RS12245;product=c-type cytochrome;protein_id=WP_011409699.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2572547 2574265 . + . ID=gene-LLC55_RS12250;Name=LLC55_RS12250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12250;old_locus_tag=LLC55_12255 NZ_CP086200.1 Protein Homology CDS 2572547 2574265 . + 0 ID=cds-WP_011409700.1;Parent=gene-LLC55_RS12250;Dbxref=Genbank:WP_011409700.1;Name=WP_011409700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089040.1;locus_tag=LLC55_RS12250;product=ExeM/NucH family extracellular endonuclease;protein_id=WP_011409700.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2574356 2574742 . - . ID=gene-LLC55_RS12255;Name=LLC55_RS12255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12255;old_locus_tag=LLC55_12260 NZ_CP086200.1 Protein Homology CDS 2574356 2574742 . - 0 ID=cds-WP_011260679.1;Parent=gene-LLC55_RS12255;Dbxref=Genbank:WP_011260679.1;Name=WP_011260679.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117606.1;locus_tag=LLC55_RS12255;product=MerC family mercury resistance protein;protein_id=WP_011260679.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2574804 2576129 . + . ID=gene-LLC55_RS12260;Name=LLC55_RS12260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12260;old_locus_tag=LLC55_12265 NZ_CP086200.1 Protein Homology CDS 2574804 2576129 . + 0 ID=cds-WP_011260680.1;Parent=gene-LLC55_RS12260;Dbxref=Genbank:WP_011260680.1;Name=WP_011260680.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849151.1;locus_tag=LLC55_RS12260;product=GTP-binding protein;protein_id=WP_011260680.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2576244 2577557 . - . ID=gene-LLC55_RS12265;Name=LLC55_RS12265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12265;old_locus_tag=LLC55_12270 NZ_CP086200.1 Protein Homology CDS 2576244 2577557 . - 0 ID=cds-WP_011260681.1;Parent=gene-LLC55_RS12265;Dbxref=Genbank:WP_011260681.1;Name=WP_011260681.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260681.1;locus_tag=LLC55_RS12265;product=type III secretion system effector protein XopR;protein_id=WP_011260681.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2577656 2578531 . - . ID=gene-LLC55_RS12270;Name=LLC55_RS12270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12270;old_locus_tag=LLC55_12275;pseudo=true NZ_CP086200.1 Protein Homology CDS 2577656 2578531 . - 0 ID=cds-LLC55_RS12270;Parent=gene-LLC55_RS12270;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379895.1;locus_tag=LLC55_RS12270;product=EamA/RhaT family transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2578598 2579260 . + . ID=gene-LLC55_RS12275;Name=LLC55_RS12275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12275;old_locus_tag=LLC55_12280 NZ_CP086200.1 Protein Homology CDS 2578598 2579260 . + 0 ID=cds-WP_011409701.1;Parent=gene-LLC55_RS12275;Dbxref=Genbank:WP_011409701.1;Name=WP_011409701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370426.1;locus_tag=LLC55_RS12275;product=alpha/beta fold hydrolase;protein_id=WP_011409701.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2579339 2580433 . + . ID=gene-LLC55_RS12280;Name=zapE;gbkey=Gene;gene=zapE;gene_biotype=protein_coding;locus_tag=LLC55_RS12280;old_locus_tag=LLC55_12285 NZ_CP086200.1 Protein Homology CDS 2579339 2580433 . + 0 ID=cds-WP_011409702.1;Parent=gene-LLC55_RS12280;Dbxref=Genbank:WP_011409702.1;Name=WP_011409702.1;Ontology_term=GO:0051301,GO:0005524,GO:0016887;gbkey=CDS;gene=zapE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974994.1;locus_tag=LLC55_RS12280;product=cell division protein ZapE;protein_id=WP_011409702.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2580491 2580745 . + . ID=gene-LLC55_RS23465;Name=LLC55_RS23465;end_range=2580745,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23465;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2580491 2580745 . + 0 ID=cds-LLC55_RS23465;Parent=gene-LLC55_RS23465;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0005524;end_range=2580745,.;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: protein motif:HMM:NF012235.2;locus_tag=LLC55_RS23465;partial=true;product=ATP-binding cassette domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2580780 2581178 . + . ID=gene-LLC55_RS23470;Name=LLC55_RS23470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23470 NZ_CP086200.1 Protein Homology CDS 2580780 2581178 . + 0 ID=cds-WP_229001929.1;Parent=gene-LLC55_RS23470;Dbxref=Genbank:WP_229001929.1;Name=WP_229001929.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: protein motif:HMM:NF012235.2;locus_tag=LLC55_RS23470;product=ATP-binding cassette domain-containing protein;protein_id=WP_229001929.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2581333 2581467 . + . ID=gene-LLC55_RS23475;Name=LLC55_RS23475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23475 NZ_CP086200.1 GeneMarkS-2+ CDS 2581333 2581467 . + 0 ID=cds-WP_012443802.1;Parent=gene-LLC55_RS23475;Dbxref=Genbank:WP_012443802.1;Name=WP_012443802.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23475;product=hypothetical protein;protein_id=WP_012443802.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2581492 2581761 . + . ID=gene-LLC55_RS12290;Name=LLC55_RS12290;end_range=2581761,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12290;old_locus_tag=LLC55_12295;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2581492 2581761 . + 0 ID=cds-LLC55_RS12290;Parent=gene-LLC55_RS12290;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2581761,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS12290;partial=true;product=IS4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2581998 2584697 . + . ID=gene-LLC55_RS12295;Name=LLC55_RS12295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12295;old_locus_tag=LLC55_12300 NZ_CP086200.1 Protein Homology CDS 2581998 2584697 . + 0 ID=cds-WP_173340400.1;Parent=gene-LLC55_RS12295;Dbxref=Genbank:WP_173340400.1;Name=WP_173340400.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163068.1;locus_tag=LLC55_RS12295;product=TonB-dependent receptor;protein_id=WP_173340400.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2584950 2586539 . - . ID=gene-LLC55_RS12300;Name=LLC55_RS12300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12300;old_locus_tag=LLC55_12305 NZ_CP086200.1 Protein Homology CDS 2584950 2586539 . - 0 ID=cds-WP_075242290.1;Parent=gene-LLC55_RS12300;Dbxref=Genbank:WP_075242290.1;Name=WP_075242290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374446.1;locus_tag=LLC55_RS12300;product=sulfotransferase;protein_id=WP_075242290.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2586539 2588776 . - . ID=gene-LLC55_RS12305;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=LLC55_RS12305;old_locus_tag=LLC55_12310 NZ_CP086200.1 Protein Homology CDS 2586539 2588776 . - 0 ID=cds-WP_011409707.1;Parent=gene-LLC55_RS12305;Dbxref=Genbank:WP_011409707.1;Name=WP_011409707.1;Ontology_term=GO:0006426,GO:0004820,GO:0009345;gbkey=CDS;gene=glyS;go_component=glycine-tRNA ligase complex|0009345||IEA;go_function=glycine-tRNA ligase activity|0004820||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409707.1;locus_tag=LLC55_RS12305;product=glycine--tRNA ligase subunit beta;protein_id=WP_011409707.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2589065 2589973 . - . ID=gene-LLC55_RS12310;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=LLC55_RS12310;old_locus_tag=LLC55_12315 NZ_CP086200.1 Protein Homology CDS 2589065 2589973 . - 0 ID=cds-WP_011409708.1;Parent=gene-LLC55_RS12310;Dbxref=Genbank:WP_011409708.1;Name=WP_011409708.1;Ontology_term=GO:0006426,GO:0004820,GO:0009345;gbkey=CDS;gene=glyQ;go_component=glycine-tRNA ligase complex|0009345||IEA;go_function=glycine-tRNA ligase activity|0004820||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156064.1;locus_tag=LLC55_RS12310;product=glycine--tRNA ligase subunit alpha;protein_id=WP_011409708.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2590063 2591877 . + . ID=gene-LLC55_RS12315;Name=LLC55_RS12315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12315;old_locus_tag=LLC55_12320 NZ_CP086200.1 Protein Homology CDS 2590063 2591877 . + 0 ID=cds-WP_011409709.1;Parent=gene-LLC55_RS12315;Dbxref=Genbank:WP_011409709.1;Name=WP_011409709.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803759.1;locus_tag=LLC55_RS12315;product=GspE/PulE family protein;protein_id=WP_011409709.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2592263 2601088 . - . ID=gene-LLC55_RS12320;Name=LLC55_RS12320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12320;old_locus_tag=LLC55_12325 NZ_CP086200.1 Protein Homology CDS 2592263 2601088 . - 0 ID=cds-WP_153303324.1;Parent=gene-LLC55_RS12320;Dbxref=Genbank:WP_153303324.1;Name=WP_153303324.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260690.1;locus_tag=LLC55_RS12320;product=hypothetical protein;protein_id=WP_153303324.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2601187 2601985 . + . ID=gene-LLC55_RS12325;Name=LLC55_RS12325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12325;old_locus_tag=LLC55_12330 NZ_CP086200.1 Protein Homology CDS 2601187 2601458 . + 0 ID=cds-WP_115801913.1;Parent=gene-LLC55_RS12325;Dbxref=Genbank:WP_115801913.1;Name=WP_115801913.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS12325;product=IS5 family transposase;protein_id=WP_115801913.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2601457 2601985 . + 1 ID=cds-WP_115801913.1;Parent=gene-LLC55_RS12325;Dbxref=Genbank:WP_115801913.1;Name=WP_115801913.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS12325;product=IS5 family transposase;protein_id=WP_115801913.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2602529 2603281 . + . ID=gene-LLC55_RS12330;Name=LLC55_RS12330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12330;old_locus_tag=LLC55_12335 NZ_CP086200.1 Protein Homology CDS 2602529 2603281 . + 0 ID=cds-WP_011409712.1;Parent=gene-LLC55_RS12330;Dbxref=Genbank:WP_011409712.1;Name=WP_011409712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154683.1;locus_tag=LLC55_RS12330;product=glutamine amidotransferase;protein_id=WP_011409712.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2603341 2604240 . + . ID=gene-LLC55_RS12335;Name=LLC55_RS12335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12335;old_locus_tag=LLC55_12340 NZ_CP086200.1 Protein Homology CDS 2603341 2604240 . + 0 ID=cds-WP_011260693.1;Parent=gene-LLC55_RS12335;Dbxref=Genbank:WP_011260693.1;Name=WP_011260693.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154682.1;locus_tag=LLC55_RS12335;product=BPSS1780 family membrane protein;protein_id=WP_011260693.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2604392 2605147 . - . ID=gene-LLC55_RS12340;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=LLC55_RS12340;old_locus_tag=LLC55_12345 NZ_CP086200.1 Protein Homology CDS 2604392 2605147 . - 0 ID=cds-WP_011260694.1;Parent=gene-LLC55_RS12340;Dbxref=Genbank:WP_011260694.1;Name=WP_011260694.1;Ontology_term=GO:0015628,GO:0005886;gbkey=CDS;gene=tatC;go_component=plasma membrane|0005886||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302261.1;locus_tag=LLC55_RS12340;product=twin-arginine translocase subunit TatC;protein_id=WP_011260694.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2605144 2605779 . - . ID=gene-LLC55_RS12345;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=LLC55_RS12345;old_locus_tag=LLC55_12350 NZ_CP086200.1 Protein Homology CDS 2605144 2605779 . - 0 ID=cds-WP_011409714.1;Parent=gene-LLC55_RS12345;Dbxref=Genbank:WP_011409714.1;Name=WP_011409714.1;Ontology_term=GO:0015031,GO:0015628;gbkey=CDS;gene=tatB;go_process=protein transport|0015031||IEA,protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349077.1;locus_tag=LLC55_RS12345;product=Sec-independent protein translocase protein TatB;protein_id=WP_011409714.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2605795 2606022 . - . ID=gene-LLC55_RS12350;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=LLC55_RS12350;old_locus_tag=LLC55_12355 NZ_CP086200.1 Protein Homology CDS 2605795 2606022 . - 0 ID=cds-WP_003484969.1;Parent=gene-LLC55_RS12350;Dbxref=Genbank:WP_003484969.1;Name=WP_003484969.1;Ontology_term=GO:0043953,GO:0016020;gbkey=CDS;gene=tatA;go_component=membrane|0016020||IEA;go_process=protein transport by the Tat complex|0043953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449086.1;locus_tag=LLC55_RS12350;product=Sec-independent protein translocase subunit TatA;protein_id=WP_003484969.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2606095 2606997 . - . ID=gene-LLC55_RS12355;Name=LLC55_RS12355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12355;old_locus_tag=LLC55_12360 NZ_CP086200.1 Protein Homology CDS 2606095 2606997 . - 0 ID=cds-WP_011409715.1;Parent=gene-LLC55_RS12355;Dbxref=Genbank:WP_011409715.1;Name=WP_011409715.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154679.1;locus_tag=LLC55_RS12355;product=YSC84-related protein;protein_id=WP_011409715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2607152 2608117 . + . ID=gene-LLC55_RS12360;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=LLC55_RS12360;old_locus_tag=LLC55_12365 NZ_CP086200.1 Protein Homology CDS 2607152 2608117 . + 0 ID=cds-WP_011409716.1;Parent=gene-LLC55_RS12360;Dbxref=Genbank:WP_011409716.1;Name=WP_011409716.1;Ontology_term=GO:0006779,GO:0004325;gbkey=CDS;gene=hemH;go_function=ferrochelatase activity|0004325||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505180.1;locus_tag=LLC55_RS12360;product=ferrochelatase;protein_id=WP_011409716.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2608120 2608970 . + . ID=gene-LLC55_RS12365;Name=LLC55_RS12365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12365;old_locus_tag=LLC55_12370;pseudo=true NZ_CP086200.1 Protein Homology CDS 2608120 2608970 . + 0 ID=cds-LLC55_RS12365;Parent=gene-LLC55_RS12365;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904259.1;locus_tag=LLC55_RS12365;product=alpha/beta hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2609051 2609509 . + . ID=gene-LLC55_RS12370;Name=LLC55_RS12370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12370;old_locus_tag=LLC55_12375 NZ_CP086200.1 Protein Homology CDS 2609051 2609509 . + 0 ID=cds-WP_011409718.1;Parent=gene-LLC55_RS12370;Dbxref=Genbank:WP_011409718.1;Name=WP_011409718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409718.1;locus_tag=LLC55_RS12370;product=hypothetical protein;protein_id=WP_011409718.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2609642 2609717 . - . ID=gene-LLC55_RS12375;Name=LLC55_RS12375;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS12375;old_locus_tag=LLC55_12380 NZ_CP086200.1 cmsearch ncRNA 2609642 2609717 . - . ID=rna-LLC55_RS12375;Parent=gene-LLC55_RS12375;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12375;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2609642 2609717 . - . ID=exon-LLC55_RS12375-1;Parent=rna-LLC55_RS12375;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12375;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2609780 2610565 . - . ID=gene-LLC55_RS12380;Name=LLC55_RS12380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12380;old_locus_tag=LLC55_12385 NZ_CP086200.1 Protein Homology CDS 2609780 2610565 . - 0 ID=cds-WP_011409719.1;Parent=gene-LLC55_RS12380;Dbxref=Genbank:WP_011409719.1;Name=WP_011409719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374496.1;locus_tag=LLC55_RS12380;product=SprT family zinc-dependent metalloprotease;protein_id=WP_011409719.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2611192 2612097 . - . ID=gene-LLC55_RS12385;Name=LLC55_RS12385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12385;old_locus_tag=LLC55_12390 NZ_CP086200.1 Protein Homology CDS 2611192 2612097 . - 0 ID=cds-WP_011409720.1;Parent=gene-LLC55_RS12385;Dbxref=Genbank:WP_011409720.1;Name=WP_011409720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154674.1;locus_tag=LLC55_RS12385;product=recombination-associated protein RdgC;protein_id=WP_011409720.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2612161 2613078 . - . ID=gene-LLC55_RS12390;Name=ttcA;gbkey=Gene;gene=ttcA;gene_biotype=protein_coding;locus_tag=LLC55_RS12390;old_locus_tag=LLC55_12395 NZ_CP086200.1 Protein Homology CDS 2612161 2613078 . - 0 ID=cds-WP_011260702.1;Parent=gene-LLC55_RS12390;Dbxref=Genbank:WP_011260702.1;Name=WP_011260702.1;Ontology_term=GO:0008033;gbkey=CDS;gene=ttcA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374500.1;locus_tag=LLC55_RS12390;product=tRNA 2-thiocytidine(32) synthetase TtcA;protein_id=WP_011260702.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2613682 2615019 . + . ID=gene-LLC55_RS12395;Name=xylA;gbkey=Gene;gene=xylA;gene_biotype=protein_coding;locus_tag=LLC55_RS12395;old_locus_tag=LLC55_12400 NZ_CP086200.1 Protein Homology CDS 2613682 2615019 . + 0 ID=cds-WP_011259480.1;Parent=gene-LLC55_RS12395;Dbxref=Genbank:WP_011259480.1;Name=WP_011259480.1;Ontology_term=GO:0006098,GO:0042732,GO:0000287,GO:0009045;gbkey=CDS;gene=xylA;go_function=magnesium ion binding|0000287||IEA,xylose isomerase activity|0009045||IEA;go_process=pentose-phosphate shunt|0006098||IEA,D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171248.1;locus_tag=LLC55_RS12395;product=xylose isomerase;protein_id=WP_011259480.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2615245 2616255 . - . ID=gene-LLC55_RS12400;Name=LLC55_RS12400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12400;old_locus_tag=LLC55_12405 NZ_CP086200.1 Protein Homology CDS 2615245 2616255 . - 0 ID=cds-WP_012443787.1;Parent=gene-LLC55_RS12400;Dbxref=Genbank:WP_012443787.1;Name=WP_012443787.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974622.1;locus_tag=LLC55_RS12400;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_012443787.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2616206 2616370 . + . ID=gene-LLC55_RS12405;Name=LLC55_RS12405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12405;old_locus_tag=LLC55_12410 NZ_CP086200.1 GeneMarkS-2+ CDS 2616206 2616370 . + 0 ID=cds-WP_012443786.1;Parent=gene-LLC55_RS12405;Dbxref=Genbank:WP_012443786.1;Name=WP_012443786.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS12405;product=hypothetical protein;protein_id=WP_012443786.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2616488 2618683 . + . ID=gene-LLC55_RS12410;Name=LLC55_RS12410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12410;old_locus_tag=LLC55_12415 NZ_CP086200.1 Protein Homology CDS 2616488 2618683 . + 0 ID=cds-WP_011409722.1;Parent=gene-LLC55_RS12410;Dbxref=Genbank:WP_011409722.1;Name=WP_011409722.1;Ontology_term=GO:0045493,GO:0046559;gbkey=CDS;go_function=alpha-glucuronidase activity|0046559||IEA;go_process=xylan catabolic process|0045493||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409722.1;locus_tag=LLC55_RS12410;product=alpha-glucuronidase family glycosyl hydrolase;protein_id=WP_011409722.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2618680 2620644 . + . ID=gene-LLC55_RS12415;Name=LLC55_RS12415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12415;old_locus_tag=LLC55_12420 NZ_CP086200.1 Protein Homology CDS 2618680 2620644 . + 0 ID=cds-WP_228329592.1;Parent=gene-LLC55_RS12415;Dbxref=Genbank:WP_228329592.1;Name=WP_228329592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155225.1;locus_tag=LLC55_RS12415;product=9-O-acetylesterase;protein_id=WP_228329592.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2620656 2621915 . + . ID=gene-LLC55_RS12420;Name=LLC55_RS12420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12420;old_locus_tag=LLC55_12425 NZ_CP086200.1 Protein Homology CDS 2620656 2621915 . + 0 ID=cds-WP_011409724.1;Parent=gene-LLC55_RS12420;Dbxref=Genbank:WP_011409724.1;Name=WP_011409724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349089.1;locus_tag=LLC55_RS12420;product=D-galactonate dehydratase family protein;protein_id=WP_011409724.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2621915 2623615 . + . ID=gene-LLC55_RS12425;Name=LLC55_RS12425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12425;old_locus_tag=LLC55_12430 NZ_CP086200.1 Protein Homology CDS 2621915 2623615 . + 0 ID=cds-WP_011260707.1;Parent=gene-LLC55_RS12425;Dbxref=Genbank:WP_011260707.1;Name=WP_011260707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260707.1;locus_tag=LLC55_RS12425;product=glycoside hydrolase family 43 protein;protein_id=WP_011260707.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2623618 2626332 . + . ID=gene-LLC55_RS12430;Name=LLC55_RS12430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12430;old_locus_tag=LLC55_12435 NZ_CP086200.1 Protein Homology CDS 2623618 2626332 . + 0 ID=cds-WP_080493943.1;Parent=gene-LLC55_RS12430;Dbxref=Genbank:WP_080493943.1;Name=WP_080493943.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443780.1;locus_tag=LLC55_RS12430;product=glycoside hydrolase family 3 protein;protein_id=WP_080493943.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2626555 2628027 . + . ID=gene-LLC55_RS12435;Name=LLC55_RS12435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12435;old_locus_tag=LLC55_12440 NZ_CP086200.1 Protein Homology CDS 2626555 2628027 . + 0 ID=cds-WP_011260709.1;Parent=gene-LLC55_RS12435;Dbxref=Genbank:WP_011260709.1;Name=WP_011260709.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922858.1;locus_tag=LLC55_RS12435;product=mannitol dehydrogenase family protein;protein_id=WP_011260709.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2628253 2628393 . - . ID=gene-LLC55_RS12440;Name=LLC55_RS12440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12440;old_locus_tag=LLC55_12445 NZ_CP086200.1 GeneMarkS-2+ CDS 2628253 2628393 . - 0 ID=cds-WP_228329593.1;Parent=gene-LLC55_RS12440;Dbxref=Genbank:WP_228329593.1;Name=WP_228329593.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS12440;product=hypothetical protein;protein_id=WP_228329593.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2628457 2628855 . + . ID=gene-LLC55_RS12445;Name=LLC55_RS12445;end_range=2628855,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12445;old_locus_tag=LLC55_12450;partial=true;pseudo=true;start_range=.,2628457 NZ_CP086200.1 Protein Homology CDS 2628457 2628855 . + 0 ID=cds-LLC55_RS12445;Parent=gene-LLC55_RS12445;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2628855,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612348.1;locus_tag=LLC55_RS12445;partial=true;product=transposase;pseudo=true;start_range=.,2628457;transl_table=11 NZ_CP086200.1 RefSeq gene 2629005 2630060 . - . ID=gene-LLC55_RS12450;Name=LLC55_RS12450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12450;old_locus_tag=LLC55_12455 NZ_CP086200.1 Protein Homology CDS 2629005 2630060 . - 0 ID=cds-WP_011260711.1;Parent=gene-LLC55_RS12450;Dbxref=Genbank:WP_011260711.1;Name=WP_011260711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154877.1;locus_tag=LLC55_RS12450;product=hypothetical protein;protein_id=WP_011260711.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2630288 2631706 . - . ID=gene-LLC55_RS12455;Name=uxaC;gbkey=Gene;gene=uxaC;gene_biotype=protein_coding;locus_tag=LLC55_RS12455;old_locus_tag=LLC55_12460 NZ_CP086200.1 Protein Homology CDS 2630288 2631706 . - 0 ID=cds-WP_011260712.1;Parent=gene-LLC55_RS12455;Dbxref=Genbank:WP_011260712.1;Name=WP_011260712.1;Ontology_term=GO:0006064,GO:0008880;gbkey=CDS;gene=uxaC;go_function=glucuronate isomerase activity|0008880||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916173.1;locus_tag=LLC55_RS12455;product=glucuronate isomerase;protein_id=WP_011260712.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2631747 2632628 . - . ID=gene-LLC55_RS12460;Name=LLC55_RS12460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12460;old_locus_tag=LLC55_12465 NZ_CP086200.1 Protein Homology CDS 2631747 2632628 . - 0 ID=cds-WP_228329751.1;Parent=gene-LLC55_RS12460;Dbxref=Genbank:WP_228329751.1;Name=WP_228329751.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012551.2;locus_tag=LLC55_RS12460;product=endo-1%2C4-beta-xylanase;protein_id=WP_228329751.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2632518 2632745 . + . ID=gene-LLC55_RS12465;Name=LLC55_RS12465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12465;old_locus_tag=LLC55_12470 NZ_CP086200.1 Protein Homology CDS 2632518 2632745 . + 0 ID=cds-WP_228329752.1;Parent=gene-LLC55_RS12465;Dbxref=Genbank:WP_228329752.1;Name=WP_228329752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155203.1;locus_tag=LLC55_RS12465;product=hypothetical protein;protein_id=WP_228329752.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2633141 2634131 . - . ID=gene-LLC55_RS12470;Name=LLC55_RS12470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12470;old_locus_tag=LLC55_12475;pseudo=true NZ_CP086200.1 Protein Homology CDS 2633141 2634131 . - 0 ID=cds-LLC55_RS12470;Parent=gene-LLC55_RS12470;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485050.1;locus_tag=LLC55_RS12470;product=endo-1%2C4-beta-xylanase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2634141 2635442 . - . ID=gene-LLC55_RS12475;Name=LLC55_RS12475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12475;old_locus_tag=LLC55_12480 NZ_CP086200.1 Protein Homology CDS 2634141 2635442 . - 0 ID=cds-WP_042465333.1;Parent=gene-LLC55_RS12475;Dbxref=Genbank:WP_042465333.1;Name=WP_042465333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349110.1;locus_tag=LLC55_RS12475;product=MFS transporter;protein_id=WP_042465333.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2635904 2638837 . + . ID=gene-LLC55_RS12480;Name=LLC55_RS12480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12480;old_locus_tag=LLC55_12485 NZ_CP086200.1 Protein Homology CDS 2635904 2638837 . + 0 ID=cds-WP_011409727.1;Parent=gene-LLC55_RS12480;Dbxref=Genbank:WP_011409727.1;Name=WP_011409727.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155199.1;locus_tag=LLC55_RS12480;product=TonB-dependent receptor;protein_id=WP_011409727.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2638936 2640423 . + . ID=gene-LLC55_RS12485;Name=LLC55_RS12485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12485;old_locus_tag=LLC55_12490 NZ_CP086200.1 Protein Homology CDS 2638936 2640423 . + 0 ID=cds-WP_011409728.1;Parent=gene-LLC55_RS12485;Dbxref=Genbank:WP_011409728.1;Name=WP_011409728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155198.1;locus_tag=LLC55_RS12485;product=MFS transporter;protein_id=WP_011409728.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2640455 2641489 . + . ID=gene-LLC55_RS12490;Name=LLC55_RS12490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12490;old_locus_tag=LLC55_12495 NZ_CP086200.1 Protein Homology CDS 2640455 2641489 . + 0 ID=cds-WP_011260718.1;Parent=gene-LLC55_RS12490;Dbxref=Genbank:WP_011260718.1;Name=WP_011260718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573829.1;locus_tag=LLC55_RS12490;product=glycoside hydrolase family 43 protein;protein_id=WP_011260718.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2641790 2641866 . + . ID=gene-LLC55_RS12495;Name=LLC55_RS12495;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS12495;old_locus_tag=LLC55_12500 NZ_CP086200.1 cmsearch ncRNA 2641790 2641866 . + . ID=rna-LLC55_RS12495;Parent=gene-LLC55_RS12495;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12495;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2641790 2641866 . + . ID=exon-LLC55_RS12495-1;Parent=rna-LLC55_RS12495;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12495;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2641906 2642704 . + . ID=gene-LLC55_RS12500;Name=LLC55_RS12500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12500;old_locus_tag=LLC55_12505 NZ_CP086200.1 Protein Homology CDS 2641906 2642177 . + 0 ID=cds-WP_094187716.1;Parent=gene-LLC55_RS12500;Dbxref=Genbank:WP_094187716.1;Name=WP_094187716.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS12500;product=IS5 family transposase;protein_id=WP_094187716.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2642176 2642704 . + 1 ID=cds-WP_094187716.1;Parent=gene-LLC55_RS12500;Dbxref=Genbank:WP_094187716.1;Name=WP_094187716.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS12500;product=IS5 family transposase;protein_id=WP_094187716.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2642929 2643425 . + . ID=gene-LLC55_RS12505;Name=LLC55_RS12505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12505;old_locus_tag=LLC55_12510;pseudo=true NZ_CP086200.1 Protein Homology CDS 2642929 2643425 . + 0 ID=cds-LLC55_RS12505;Parent=gene-LLC55_RS12505;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486500.1;locus_tag=LLC55_RS12505;product=lipocalin family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2643580 2643756 . - . ID=gene-LLC55_RS12510;Name=LLC55_RS12510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12510;old_locus_tag=LLC55_12515 NZ_CP086200.1 Protein Homology CDS 2643580 2643756 . - 0 ID=cds-WP_010374782.1;Parent=gene-LLC55_RS12510;Dbxref=Genbank:WP_010374782.1;Name=WP_010374782.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374782.1;locus_tag=LLC55_RS12510;product=hypothetical protein;protein_id=WP_010374782.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2644010 2644966 . + . ID=gene-LLC55_RS12515;Name=LLC55_RS12515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12515;old_locus_tag=LLC55_12520 NZ_CP086200.1 Protein Homology CDS 2644010 2644966 . + 0 ID=cds-WP_109182039.1;Parent=gene-LLC55_RS12515;Dbxref=Genbank:WP_109182039.1;Name=WP_109182039.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS12515;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182039.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2645196 2645648 . + . ID=gene-LLC55_RS12520;Name=LLC55_RS12520;end_range=2645648,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12520;old_locus_tag=LLC55_12525;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2645196 2645648 . + 0 ID=cds-LLC55_RS12520;Parent=gene-LLC55_RS12520;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2645648,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167492.1;locus_tag=LLC55_RS12520;partial=true;product=CSS-motif domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2645694 2646457 . + . ID=gene-LLC55_RS12525;Name=LLC55_RS12525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12525;old_locus_tag=LLC55_12530 NZ_CP086200.1 Protein Homology CDS 2645694 2646009 . + 0 ID=cds-WP_109182040.1;Parent=gene-LLC55_RS12525;Dbxref=Genbank:WP_109182040.1;Name=WP_109182040.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS12525;product=IS5 family transposase;protein_id=WP_109182040.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2646009 2646457 . + 2 ID=cds-WP_109182040.1;Parent=gene-LLC55_RS12525;Dbxref=Genbank:WP_109182040.1;Name=WP_109182040.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS12525;product=IS5 family transposase;protein_id=WP_109182040.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2646468 2647574 . + . ID=gene-LLC55_RS12530;Name=LLC55_RS12530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12530;old_locus_tag=LLC55_12535;partial=true;pseudo=true;start_range=.,2646468 NZ_CP086200.1 Protein Homology CDS 2646468 2647574 . + 0 ID=cds-LLC55_RS12530;Parent=gene-LLC55_RS12530;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302203.1;locus_tag=LLC55_RS12530;partial=true;product=EAL domain-containing protein;pseudo=true;start_range=.,2646468;transl_table=11 NZ_CP086200.1 RefSeq gene 2647640 2648761 . - . ID=gene-LLC55_RS12535;Name=LLC55_RS12535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12535;old_locus_tag=LLC55_12540 NZ_CP086200.1 Protein Homology CDS 2647640 2648761 . - 0 ID=cds-WP_011260725.1;Parent=gene-LLC55_RS12535;Dbxref=Genbank:WP_011260725.1;Name=WP_011260725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348875.1;locus_tag=LLC55_RS12535;product=acyl-CoA desaturase;protein_id=WP_011260725.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2648771 2649847 . - . ID=gene-LLC55_RS12540;Name=LLC55_RS12540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12540;old_locus_tag=LLC55_12545 NZ_CP086200.1 Protein Homology CDS 2648771 2649847 . - 0 ID=cds-WP_011409734.1;Parent=gene-LLC55_RS12540;Dbxref=Genbank:WP_011409734.1;Name=WP_011409734.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974569.1;locus_tag=LLC55_RS12540;product=ferredoxin reductase;protein_id=WP_011409734.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2649940 2650620 . + . ID=gene-LLC55_RS12545;Name=fabR;gbkey=Gene;gene=fabR;gene_biotype=protein_coding;locus_tag=LLC55_RS12545;old_locus_tag=LLC55_12550 NZ_CP086200.1 Protein Homology CDS 2649940 2650620 . + 0 ID=cds-WP_011260727.1;Parent=gene-LLC55_RS12545;Dbxref=Genbank:WP_011260727.1;Name=WP_011260727.1;Ontology_term=GO:0003677;gbkey=CDS;gene=fabR;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260727.1;locus_tag=LLC55_RS12545;product=HTH-type transcriptional repressor FabR;protein_id=WP_011260727.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2650653 2651451 . - . ID=gene-LLC55_RS12550;Name=LLC55_RS12550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12550;old_locus_tag=LLC55_12555 NZ_CP086200.1 Protein Homology CDS 2651180 2651451 . - 0 ID=cds-WP_109182041.1;Parent=gene-LLC55_RS12550;Dbxref=Genbank:WP_109182041.1;Name=WP_109182041.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS12550;product=IS5 family transposase;protein_id=WP_109182041.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2650653 2651181 . - 1 ID=cds-WP_109182041.1;Parent=gene-LLC55_RS12550;Dbxref=Genbank:WP_109182041.1;Name=WP_109182041.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS12550;product=IS5 family transposase;protein_id=WP_109182041.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2651580 2652899 . + . ID=gene-LLC55_RS12555;Name=LLC55_RS12555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12555;old_locus_tag=LLC55_12560 NZ_CP086200.1 Protein Homology CDS 2651580 2652899 . + 0 ID=cds-WP_011409735.1;Parent=gene-LLC55_RS12555;Dbxref=Genbank:WP_011409735.1;Name=WP_011409735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS12555;product=IS701-like element ISXo15 family transposase;protein_id=WP_011409735.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2653002 2653958 . + . ID=gene-LLC55_RS12560;Name=LLC55_RS12560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12560;old_locus_tag=LLC55_12565 NZ_CP086200.1 Protein Homology CDS 2653002 2653958 . + 0 ID=cds-WP_228329594.1;Parent=gene-LLC55_RS12560;Dbxref=Genbank:WP_228329594.1;Name=WP_228329594.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182719.1;locus_tag=LLC55_RS12560;product=IS30 family transposase;protein_id=WP_228329594.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2653967 2654908 . - . ID=gene-LLC55_RS12565;Name=LLC55_RS12565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12565;old_locus_tag=LLC55_12570;partial=true;pseudo=true;start_range=.,2653967 NZ_CP086200.1 Protein Homology CDS 2653967 2654908 . - 0 ID=cds-LLC55_RS12565;Parent=gene-LLC55_RS12565;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052641.1;locus_tag=LLC55_RS12565;partial=true;product=DUF3182 family protein;pseudo=true;start_range=.,2653967;transl_table=11 NZ_CP086200.1 RefSeq gene 2655002 2655078 . - . ID=gene-LLC55_RS12570;Name=LLC55_RS12570;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS12570;old_locus_tag=LLC55_12575 NZ_CP086200.1 cmsearch ncRNA 2655002 2655078 . - . ID=rna-LLC55_RS12570;Parent=gene-LLC55_RS12570;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12570;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2655002 2655078 . - . ID=exon-LLC55_RS12570-1;Parent=rna-LLC55_RS12570;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS12570;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2655425 2655883 . + . ID=gene-LLC55_RS12575;Name=LLC55_RS12575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12575;old_locus_tag=LLC55_12580 NZ_CP086200.1 Protein Homology CDS 2655425 2655883 . + 0 ID=cds-WP_011260733.1;Parent=gene-LLC55_RS12575;Dbxref=Genbank:WP_011260733.1;Name=WP_011260733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968315.1;locus_tag=LLC55_RS12575;product=MarR family transcriptional regulator;protein_id=WP_011260733.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2655985 2656413 . + . ID=gene-LLC55_RS12580;Name=LLC55_RS12580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12580;old_locus_tag=LLC55_12585 NZ_CP086200.1 Protein Homology CDS 2655985 2656413 . + 0 ID=cds-WP_011409738.1;Parent=gene-LLC55_RS12580;Dbxref=Genbank:WP_011409738.1;Name=WP_011409738.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007509237.1;locus_tag=LLC55_RS12580;product=organic hydroperoxide resistance protein;protein_id=WP_011409738.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2656660 2657523 . - . ID=gene-LLC55_RS12585;Name=LLC55_RS12585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12585;old_locus_tag=LLC55_12590 NZ_CP086200.1 Protein Homology CDS 2656660 2657523 . - 0 ID=cds-WP_069960048.1;Parent=gene-LLC55_RS12585;Dbxref=Genbank:WP_069960048.1;Name=WP_069960048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156935.1;locus_tag=LLC55_RS12585;product=DUF2884 family protein;protein_id=WP_069960048.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2657675 2658870 . + . ID=gene-LLC55_RS12590;Name=LLC55_RS12590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12590;old_locus_tag=LLC55_12595;pseudo=true NZ_CP086200.1 Protein Homology CDS 2657675 2658870 . + 0 ID=cds-LLC55_RS12590;Parent=gene-LLC55_RS12590;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611322.1;locus_tag=LLC55_RS12590;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2659153 2660367 . - . ID=gene-LLC55_RS12595;Name=LLC55_RS12595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12595;old_locus_tag=LLC55_12600;pseudo=true NZ_CP086200.1 Protein Homology CDS 2659153 2660367 . - 0 ID=cds-LLC55_RS12595;Parent=gene-LLC55_RS12595;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS12595;product=IS4-like element ISXo14 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2660526 2660603 . + . ID=gene-LLC55_RS12600;Name=LLC55_RS12600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12600;old_locus_tag=LLC55_12605;partial=true;pseudo=true;start_range=.,2660526 NZ_CP086200.1 Protein Homology CDS 2660526 2660603 . + 0 ID=cds-LLC55_RS12600;Parent=gene-LLC55_RS12600;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159991.1;locus_tag=LLC55_RS12600;partial=true;product=oxidoreductase;pseudo=true;start_range=.,2660526;transl_table=11 NZ_CP086200.1 RefSeq gene 2660700 2660966 . - . ID=gene-LLC55_RS12605;Name=LLC55_RS12605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12605;old_locus_tag=LLC55_12610 NZ_CP086200.1 Protein Homology CDS 2660700 2660966 . - 0 ID=cds-WP_042465346.1;Parent=gene-LLC55_RS12605;Dbxref=Genbank:WP_042465346.1;Name=WP_042465346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381297.1;locus_tag=LLC55_RS12605;product=hypothetical protein;protein_id=WP_042465346.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2661128 2661376 . + . ID=gene-LLC55_RS12610;Name=LLC55_RS12610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12610;old_locus_tag=LLC55_12615 NZ_CP086200.1 Protein Homology CDS 2661128 2661376 . + 0 ID=cds-WP_011260739.1;Parent=gene-LLC55_RS12610;Dbxref=Genbank:WP_011260739.1;Name=WP_011260739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260739.1;locus_tag=LLC55_RS12610;product=helix-turn-helix transcriptional regulator;protein_id=WP_011260739.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2661585 2662343 . - . ID=gene-LLC55_RS12615;Name=LLC55_RS12615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12615;old_locus_tag=LLC55_12620 NZ_CP086200.1 Protein Homology CDS 2661585 2662343 . - 0 ID=cds-WP_011409743.1;Parent=gene-LLC55_RS12615;Dbxref=Genbank:WP_011409743.1;Name=WP_011409743.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305439.1;locus_tag=LLC55_RS12615;product=Imm52 family immunity protein;protein_id=WP_011409743.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2662340 2663125 . - . ID=gene-LLC55_RS12620;Name=LLC55_RS12620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12620;old_locus_tag=LLC55_12625 NZ_CP086200.1 Protein Homology CDS 2662340 2663125 . - 0 ID=cds-WP_011409744.1;Parent=gene-LLC55_RS12620;Dbxref=Genbank:WP_011409744.1;Name=WP_011409744.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501329.1;locus_tag=LLC55_RS12620;product=Tox-REase-5 domain-containing protein;protein_id=WP_011409744.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2663134 2663292 . - . ID=gene-LLC55_RS12625;Name=LLC55_RS12625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12625;old_locus_tag=LLC55_12630 NZ_CP086200.1 GeneMarkS-2+ CDS 2663134 2663292 . - 0 ID=cds-WP_228329595.1;Parent=gene-LLC55_RS12625;Dbxref=Genbank:WP_228329595.1;Name=WP_228329595.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS12625;product=hypothetical protein;protein_id=WP_228329595.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2663327 2663935 . - . ID=gene-LLC55_RS12630;Name=LLC55_RS12630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12630;old_locus_tag=LLC55_12635 NZ_CP086200.1 Protein Homology CDS 2663327 2663935 . - 0 ID=cds-WP_011409746.1;Parent=gene-LLC55_RS12630;Dbxref=Genbank:WP_011409746.1;Name=WP_011409746.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024894.2;locus_tag=LLC55_RS12630;product=DUF4123 domain-containing protein;protein_id=WP_011409746.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2663938 2664360 . - . ID=gene-LLC55_RS12635;Name=LLC55_RS12635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12635;old_locus_tag=LLC55_12640 NZ_CP086200.1 Protein Homology CDS 2663938 2664360 . - 0 ID=cds-WP_042465811.1;Parent=gene-LLC55_RS12635;Dbxref=Genbank:WP_042465811.1;Name=WP_042465811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304496.1;locus_tag=LLC55_RS12635;product=PAAR domain-containing protein;protein_id=WP_042465811.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2664488 2664814 . - . ID=gene-LLC55_RS12640;Name=LLC55_RS12640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12640;old_locus_tag=LLC55_12645 NZ_CP086200.1 Protein Homology CDS 2664488 2664814 . - 0 ID=cds-WP_228329596.1;Parent=gene-LLC55_RS12640;Dbxref=Genbank:WP_228329596.1;Name=WP_228329596.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112541.1;locus_tag=LLC55_RS12640;product=hypothetical protein;protein_id=WP_228329596.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2665069 2665401 . + . ID=gene-LLC55_RS12645;Name=LLC55_RS12645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12645;old_locus_tag=LLC55_12650 NZ_CP086200.1 Protein Homology CDS 2665069 2665401 . + 0 ID=cds-WP_011260743.1;Parent=gene-LLC55_RS12645;Dbxref=Genbank:WP_011260743.1;Name=WP_011260743.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302538.1;locus_tag=LLC55_RS12645;product=hypothetical protein;protein_id=WP_011260743.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2665561 2665748 . + . ID=gene-LLC55_RS12650;Name=LLC55_RS12650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12650;old_locus_tag=LLC55_12655;pseudo=true NZ_CP086200.1 Protein Homology CDS 2665561 2665748 . + 0 ID=cds-LLC55_RS12650;Parent=gene-LLC55_RS12650;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482327.1;locus_tag=LLC55_RS12650;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2665851 2667245 . - . ID=gene-LLC55_RS12655;Name=LLC55_RS12655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12655;old_locus_tag=LLC55_12660 NZ_CP086200.1 Protein Homology CDS 2665851 2667245 . - 0 ID=cds-WP_027703652.1;Parent=gene-LLC55_RS12655;Dbxref=Genbank:WP_027703652.1;Name=WP_027703652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159992.1;locus_tag=LLC55_RS12655;product=nucleoside hydrolase;protein_id=WP_027703652.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2668174 2668464 . - . ID=gene-LLC55_RS12660;Name=LLC55_RS12660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12660;old_locus_tag=LLC55_12665 NZ_CP086200.1 Protein Homology CDS 2668174 2668464 . - 0 ID=cds-WP_011260746.1;Parent=gene-LLC55_RS12660;Dbxref=Genbank:WP_011260746.1;Name=WP_011260746.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156025.1;locus_tag=LLC55_RS12660;product=HigA family addiction module antitoxin;protein_id=WP_011260746.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2668482 2668763 . - . ID=gene-LLC55_RS12665;Name=LLC55_RS12665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12665;old_locus_tag=LLC55_12670 NZ_CP086200.1 Protein Homology CDS 2668482 2668763 . - 0 ID=cds-WP_012443754.1;Parent=gene-LLC55_RS12665;Dbxref=Genbank:WP_012443754.1;Name=WP_012443754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010952670.1;locus_tag=LLC55_RS12665;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_012443754.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2668858 2671110 . - . ID=gene-LLC55_RS12670;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=LLC55_RS12670;old_locus_tag=LLC55_12675 NZ_CP086200.1 Protein Homology CDS 2668858 2671110 . - 0 ID=cds-WP_069960050.1;Parent=gene-LLC55_RS12670;Dbxref=Genbank:WP_069960050.1;Name=WP_069960050.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recD;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159993.1;locus_tag=LLC55_RS12670;product=exodeoxyribonuclease V subunit alpha;protein_id=WP_069960050.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2671298 2675371 . - . ID=gene-LLC55_RS12675;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=LLC55_RS12675;old_locus_tag=LLC55_12680 NZ_CP086200.1 Protein Homology CDS 2671298 2675371 . - 0 ID=cds-WP_044756262.1;Parent=gene-LLC55_RS12675;Dbxref=Genbank:WP_044756262.1;Name=WP_044756262.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recB;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171629.1;locus_tag=LLC55_RS12675;product=exodeoxyribonuclease V subunit beta;protein_id=WP_044756262.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2675368 2678781 . - . ID=gene-LLC55_RS12680;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=LLC55_RS12680;old_locus_tag=LLC55_12685 NZ_CP086200.1 Protein Homology CDS 2675368 2678781 . - 0 ID=cds-WP_044756261.1;Parent=gene-LLC55_RS12680;Dbxref=Genbank:WP_044756261.1;Name=WP_044756261.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recC;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164976.1;locus_tag=LLC55_RS12680;product=exodeoxyribonuclease V subunit gamma;protein_id=WP_044756261.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2678817 2679119 . + . ID=gene-LLC55_RS12685;Name=LLC55_RS12685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12685;old_locus_tag=LLC55_12690 NZ_CP086200.1 GeneMarkS-2+ CDS 2678817 2679119 . + 0 ID=cds-WP_128415416.1;Parent=gene-LLC55_RS12685;Dbxref=Genbank:WP_128415416.1;Name=WP_128415416.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS12685;product=hypothetical protein;protein_id=WP_128415416.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2679187 2679912 . + . ID=gene-LLC55_RS12690;Name=LLC55_RS12690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12690;old_locus_tag=LLC55_12695 NZ_CP086200.1 GeneMarkS-2+ CDS 2679187 2679912 . + 0 ID=cds-WP_011409753.1;Parent=gene-LLC55_RS12690;Dbxref=Genbank:WP_011409753.1;Name=WP_011409753.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS12690;product=hypothetical protein;protein_id=WP_011409753.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2679864 2680955 . + . ID=gene-LLC55_RS12695;Name=LLC55_RS12695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12695;old_locus_tag=LLC55_12700 NZ_CP086200.1 GeneMarkS-2+ CDS 2679864 2680955 . + 0 ID=cds-WP_011409754.1;Parent=gene-LLC55_RS12695;Dbxref=Genbank:WP_011409754.1;Name=WP_011409754.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS12695;product=hypothetical protein;protein_id=WP_011409754.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2681076 2682311 . - . ID=gene-LLC55_RS12700;Name=LLC55_RS12700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12700;old_locus_tag=LLC55_12705 NZ_CP086200.1 Protein Homology CDS 2681076 2682311 . - 0 ID=cds-WP_069959761.1-4;Parent=gene-LLC55_RS12700;Dbxref=Genbank:WP_069959761.1;Name=WP_069959761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS12700;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_069959761.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2682692 2686723 . - . ID=gene-LLC55_RS12705;Name=LLC55_RS12705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12705;old_locus_tag=LLC55_12710;pseudo=true NZ_CP086200.1 Protein Homology CDS 2682692 2686723 . - 0 ID=cds-LLC55_RS12705;Parent=gene-LLC55_RS12705;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156020.1;locus_tag=LLC55_RS12705;product=putative Ig domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2687015 2687560 . + . ID=gene-LLC55_RS12710;Name=LLC55_RS12710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12710;old_locus_tag=LLC55_12715 NZ_CP086200.1 Protein Homology CDS 2687015 2687560 . + 0 ID=cds-WP_011409756.1;Parent=gene-LLC55_RS12710;Dbxref=Genbank:WP_011409756.1;Name=WP_011409756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364925.1;locus_tag=LLC55_RS12710;product=tail fiber protein;protein_id=WP_011409756.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2687629 2688156 . + . ID=gene-LLC55_RS12715;Name=LLC55_RS12715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12715;old_locus_tag=LLC55_12720 NZ_CP086200.1 Protein Homology CDS 2687629 2688156 . + 0 ID=cds-WP_011260754.1;Parent=gene-LLC55_RS12715;Dbxref=Genbank:WP_011260754.1;Name=WP_011260754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341084.1;locus_tag=LLC55_RS12715;product=tail fiber protein;protein_id=WP_011260754.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2688215 2688751 . + . ID=gene-LLC55_RS12720;Name=LLC55_RS12720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12720;old_locus_tag=LLC55_12725 NZ_CP086200.1 Protein Homology CDS 2688215 2688751 . + 0 ID=cds-WP_011260755.1;Parent=gene-LLC55_RS12720;Dbxref=Genbank:WP_011260755.1;Name=WP_011260755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156018.1;locus_tag=LLC55_RS12720;product=tail fiber protein;protein_id=WP_011260755.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2688839 2689804 . + . ID=gene-LLC55_RS12725;Name=LLC55_RS12725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12725;old_locus_tag=LLC55_12730 NZ_CP086200.1 Protein Homology CDS 2688839 2689804 . + 0 ID=cds-WP_109182045.1;Parent=gene-LLC55_RS12725;Dbxref=Genbank:WP_109182045.1;Name=WP_109182045.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS12725;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182045.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2689811 2690092 . + . ID=gene-LLC55_RS12730;Name=LLC55_RS12730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12730;old_locus_tag=LLC55_12735;partial=true;pseudo=true;start_range=.,2689811 NZ_CP086200.1 Protein Homology CDS 2689811 2690092 . + 0 ID=cds-LLC55_RS12730;Parent=gene-LLC55_RS12730;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260659.1;locus_tag=LLC55_RS12730;partial=true;product=transposase;pseudo=true;start_range=.,2689811;transl_table=11 NZ_CP086200.1 RefSeq gene 2690087 2690719 . - . ID=gene-LLC55_RS12735;Name=LLC55_RS12735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12735;old_locus_tag=LLC55_12740 NZ_CP086200.1 Protein Homology CDS 2690087 2690719 . - 0 ID=cds-WP_027704180.1;Parent=gene-LLC55_RS12735;Dbxref=Genbank:WP_027704180.1;Name=WP_027704180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903406.1;locus_tag=LLC55_RS12735;product=superoxide dismutase family protein;protein_id=WP_027704180.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2690790 2691392 . - . ID=gene-LLC55_RS12740;Name=LLC55_RS12740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12740;old_locus_tag=LLC55_12745 NZ_CP086200.1 Protein Homology CDS 2690790 2691392 . - 0 ID=cds-WP_012443745.1;Parent=gene-LLC55_RS12740;Dbxref=Genbank:WP_012443745.1;Name=WP_012443745.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165149.1;locus_tag=LLC55_RS12740;product=superoxide dismutase family protein;protein_id=WP_012443745.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2691891 2693318 . - . ID=gene-LLC55_RS12745;Name=ntrC;gbkey=Gene;gene=ntrC;gene_biotype=protein_coding;locus_tag=LLC55_RS12745;old_locus_tag=LLC55_12750 NZ_CP086200.1 Protein Homology CDS 2691891 2693318 . - 0 ID=cds-WP_011409760.1;Parent=gene-LLC55_RS12745;Dbxref=Genbank:WP_011409760.1;Name=WP_011409760.1;Ontology_term=GO:0000160,GO:0006808,GO:0000156,GO:0003677;gbkey=CDS;gene=ntrC;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of nitrogen utilization|0006808||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921161.1;locus_tag=LLC55_RS12745;product=nitrogen regulation protein NR(I);protein_id=WP_011409760.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2693311 2694366 . - . ID=gene-LLC55_RS12750;Name=LLC55_RS12750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12750;old_locus_tag=LLC55_12755 NZ_CP086200.1 Protein Homology CDS 2693311 2694366 . - 0 ID=cds-WP_011260761.1;Parent=gene-LLC55_RS12750;Dbxref=Genbank:WP_011260761.1;Name=WP_011260761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850649.1;locus_tag=LLC55_RS12750;product=ATP-binding protein;protein_id=WP_011260761.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2694637 2696079 . - . ID=gene-LLC55_RS12755;Name=LLC55_RS12755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12755;old_locus_tag=LLC55_12760 NZ_CP086200.1 Protein Homology CDS 2694637 2696079 . - 0 ID=cds-WP_075242198.1;Parent=gene-LLC55_RS12755;Dbxref=Genbank:WP_075242198.1;Name=WP_075242198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237112.1;locus_tag=LLC55_RS12755;product=ammonium transporter;protein_id=WP_075242198.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2696102 2696440 . - . ID=gene-LLC55_RS12760;Name=LLC55_RS12760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12760;old_locus_tag=LLC55_12765 NZ_CP086200.1 Protein Homology CDS 2696102 2696440 . - 0 ID=cds-WP_011260763.1;Parent=gene-LLC55_RS12760;Dbxref=Genbank:WP_011260763.1;Name=WP_011260763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016654695.1;locus_tag=LLC55_RS12760;product=P-II family nitrogen regulator;protein_id=WP_011260763.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2696718 2698127 . - . ID=gene-LLC55_RS12765;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=LLC55_RS12765;old_locus_tag=LLC55_12770 NZ_CP086200.1 Protein Homology CDS 2696718 2698127 . - 0 ID=cds-WP_011260764.1;Parent=gene-LLC55_RS12765;Dbxref=Genbank:WP_011260764.1;Name=WP_011260764.1;Ontology_term=GO:0006542,GO:0004356;gbkey=CDS;gene=glnA;go_function=glutamate-ammonia ligase activity|0004356||IEA;go_process=glutamine biosynthetic process|0006542||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157345.1;locus_tag=LLC55_RS12765;product=type I glutamate--ammonia ligase;protein_id=WP_011260764.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2698349 2699146 . + . ID=gene-LLC55_RS12770;Name=LLC55_RS12770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12770;old_locus_tag=LLC55_12775 NZ_CP086200.1 Protein Homology CDS 2698349 2699146 . + 0 ID=cds-WP_011260765.1;Parent=gene-LLC55_RS12770;Dbxref=Genbank:WP_011260765.1;Name=WP_011260765.1;Ontology_term=GO:0016311,GO:0050380,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300661.1;locus_tag=LLC55_RS12770;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_011260765.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2699283 2700089 . + . ID=gene-LLC55_RS12775;Name=LLC55_RS12775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12775;old_locus_tag=LLC55_12780 NZ_CP086200.1 Protein Homology CDS 2699283 2700089 . + 0 ID=cds-WP_011260766.1;Parent=gene-LLC55_RS12775;Dbxref=Genbank:WP_011260766.1;Name=WP_011260766.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930695.1;locus_tag=LLC55_RS12775;product=META domain-containing protein;protein_id=WP_011260766.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2700154 2701159 . - . ID=gene-LLC55_RS12780;Name=LLC55_RS12780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12780;old_locus_tag=LLC55_12785;pseudo=true NZ_CP086200.1 Protein Homology CDS 2700154 2701159 . - 0 ID=cds-LLC55_RS12780;Parent=gene-LLC55_RS12780;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157348.1;locus_tag=LLC55_RS12780;product=NAD(P)-dependent alcohol dehydrogenase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2701243 2701854 . - . ID=gene-LLC55_RS12785;Name=LLC55_RS12785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12785;old_locus_tag=LLC55_12790 NZ_CP086200.1 Protein Homology CDS 2701243 2701854 . - 0 ID=cds-WP_011409764.1;Parent=gene-LLC55_RS12785;Dbxref=Genbank:WP_011409764.1;Name=WP_011409764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157349.1;locus_tag=LLC55_RS12785;product=YbhB/YbcL family Raf kinase inhibitor-like protein;protein_id=WP_011409764.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2702049 2704121 . - . ID=gene-LLC55_RS12790;Name=LLC55_RS12790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12790;old_locus_tag=LLC55_12795 NZ_CP086200.1 Protein Homology CDS 2702049 2704121 . - 0 ID=cds-WP_011409765.1;Parent=gene-LLC55_RS12790;Dbxref=Genbank:WP_011409765.1;Name=WP_011409765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237114.1;locus_tag=LLC55_RS12790;product=tetratricopeptide repeat protein;protein_id=WP_011409765.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2704535 2705524 . - . ID=gene-LLC55_RS12795;Name=LLC55_RS12795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12795;old_locus_tag=LLC55_12800 NZ_CP086200.1 Protein Homology CDS 2704535 2705524 . - 0 ID=cds-WP_011260769.1;Parent=gene-LLC55_RS12795;Dbxref=Genbank:WP_011260769.1;Name=WP_011260769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300655.1;locus_tag=LLC55_RS12795;product=alpha/beta fold hydrolase;protein_id=WP_011260769.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2705584 2706387 . - . ID=gene-LLC55_RS12800;Name=LLC55_RS12800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12800;old_locus_tag=LLC55_12805 NZ_CP086200.1 Protein Homology CDS 2705584 2706387 . - 0 ID=cds-WP_011409766.1;Parent=gene-LLC55_RS12800;Dbxref=Genbank:WP_011409766.1;Name=WP_011409766.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912162.1;locus_tag=LLC55_RS12800;product=lysophospholipid acyltransferase family protein;protein_id=WP_011409766.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2706507 2706935 . - . ID=gene-LLC55_RS12805;Name=LLC55_RS12805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12805;old_locus_tag=LLC55_12810 NZ_CP086200.1 Protein Homology CDS 2706507 2706935 . - 0 ID=cds-WP_011260771.1;Parent=gene-LLC55_RS12805;Dbxref=Genbank:WP_011260771.1;Name=WP_011260771.1;Ontology_term=GO:0016790;gbkey=CDS;go_function=thiolester hydrolase activity|0016790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157352.1;locus_tag=LLC55_RS12805;product=hotdog fold thioesterase;protein_id=WP_011260771.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2707227 2709242 . - . ID=gene-LLC55_RS12810;Name=LLC55_RS12810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12810;old_locus_tag=LLC55_12815 NZ_CP086200.1 Protein Homology CDS 2707227 2709242 . - 0 ID=cds-WP_011260772.1;Parent=gene-LLC55_RS12810;Dbxref=Genbank:WP_011260772.1;Name=WP_011260772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921165.1;locus_tag=LLC55_RS12810;product=phospholipase D family protein;protein_id=WP_011260772.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2709239 2709811 . - . ID=gene-LLC55_RS12815;Name=LLC55_RS12815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12815;old_locus_tag=LLC55_12820 NZ_CP086200.1 Protein Homology CDS 2709239 2709811 . - 0 ID=cds-WP_011260773.1;Parent=gene-LLC55_RS12815;Dbxref=Genbank:WP_011260773.1;Name=WP_011260773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488454.1;locus_tag=LLC55_RS12815;product=YceI family protein;protein_id=WP_011260773.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2709815 2710291 . - . ID=gene-LLC55_RS12820;Name=LLC55_RS12820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12820;old_locus_tag=LLC55_12825 NZ_CP086200.1 Protein Homology CDS 2709815 2710291 . - 0 ID=cds-WP_011409767.1;Parent=gene-LLC55_RS12820;Dbxref=Genbank:WP_011409767.1;Name=WP_011409767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035432.1;locus_tag=LLC55_RS12820;product=histidine phosphatase family protein;protein_id=WP_011409767.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2710307 2710939 . - . ID=gene-LLC55_RS12825;Name=LLC55_RS12825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12825;old_locus_tag=LLC55_12830 NZ_CP086200.1 Protein Homology CDS 2710307 2710939 . - 0 ID=cds-WP_011409768.1;Parent=gene-LLC55_RS12825;Dbxref=Genbank:WP_011409768.1;Name=WP_011409768.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159611.1;locus_tag=LLC55_RS12825;product=ParA family protein;protein_id=WP_011409768.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2711292 2712209 . - . ID=gene-LLC55_RS12830;Name=LLC55_RS12830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12830;old_locus_tag=LLC55_12835 NZ_CP086200.1 Protein Homology CDS 2711292 2712209 . - 0 ID=cds-WP_011260776.1;Parent=gene-LLC55_RS12830;Dbxref=Genbank:WP_011260776.1;Name=WP_011260776.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088991.1;locus_tag=LLC55_RS12830;product=AEC family transporter;protein_id=WP_011260776.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2712471 2713106 . - . ID=gene-LLC55_RS12835;Name=LLC55_RS12835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12835;old_locus_tag=LLC55_12840;pseudo=true NZ_CP086200.1 Protein Homology CDS 2712471 2713106 . - 0 ID=cds-LLC55_RS12835;Parent=gene-LLC55_RS12835;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571529.1;locus_tag=LLC55_RS12835;product=tetratricopeptide repeat protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2713301 2717008 . + . ID=gene-LLC55_RS12840;Name=LLC55_RS12840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12840;old_locus_tag=LLC55_12845 NZ_CP086200.1 Protein Homology CDS 2713301 2717008 . + 0 ID=cds-WP_011260779.1;Parent=gene-LLC55_RS12840;Dbxref=Genbank:WP_011260779.1;Name=WP_011260779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488440.1;locus_tag=LLC55_RS12840;product=indolepyruvate ferredoxin oxidoreductase family protein;protein_id=WP_011260779.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2717151 2717771 . + . ID=gene-LLC55_RS12845;Name=LLC55_RS12845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12845;old_locus_tag=LLC55_12850 NZ_CP086200.1 Protein Homology CDS 2717151 2717771 . + 0 ID=cds-WP_011260780.1;Parent=gene-LLC55_RS12845;Dbxref=Genbank:WP_011260780.1;Name=WP_011260780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260780.1;locus_tag=LLC55_RS12845;product=helix-turn-helix transcriptional regulator;protein_id=WP_011260780.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2717768 2719045 . + . ID=gene-LLC55_RS12850;Name=LLC55_RS12850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12850;old_locus_tag=LLC55_12855 NZ_CP086200.1 Protein Homology CDS 2717768 2719045 . + 0 ID=cds-WP_011260781.1;Parent=gene-LLC55_RS12850;Dbxref=Genbank:WP_011260781.1;Name=WP_011260781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501485.1;locus_tag=LLC55_RS12850;product=type II toxin-antitoxin system HipA family toxin;protein_id=WP_011260781.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2719090 2720076 . - . ID=gene-LLC55_RS12855;Name=egtD;gbkey=Gene;gene=egtD;gene_biotype=protein_coding;locus_tag=LLC55_RS12855;old_locus_tag=LLC55_12860 NZ_CP086200.1 Protein Homology CDS 2719090 2720076 . - 0 ID=cds-WP_011260782.1;Parent=gene-LLC55_RS12855;Dbxref=Genbank:WP_011260782.1;Name=WP_011260782.1;Ontology_term=GO:0052699,GO:0030745;gbkey=CDS;gene=egtD;go_function=dimethylhistidine N-methyltransferase activity|0030745||IEA;go_process=ergothioneine biosynthetic process|0052699||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157360.1;locus_tag=LLC55_RS12855;product=L-histidine N(alpha)-methyltransferase;protein_id=WP_011260782.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2720073 2721356 . - . ID=gene-LLC55_RS12860;Name=egtB;gbkey=Gene;gene=egtB;gene_biotype=protein_coding;locus_tag=LLC55_RS12860;old_locus_tag=LLC55_12865 NZ_CP086200.1 Protein Homology CDS 2720073 2721356 . - 0 ID=cds-WP_011409772.1;Parent=gene-LLC55_RS12860;Dbxref=Genbank:WP_011409772.1;Name=WP_011409772.1;Ontology_term=GO:0052699;gbkey=CDS;gene=egtB;go_process=ergothioneine biosynthetic process|0052699||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050153.1;locus_tag=LLC55_RS12860;product=ergothioneine biosynthesis protein EgtB;protein_id=WP_011409772.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2721428 2722609 . + . ID=gene-LLC55_RS12865;Name=LLC55_RS12865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12865;old_locus_tag=LLC55_12870 NZ_CP086200.1 Protein Homology CDS 2721428 2722609 . + 0 ID=cds-WP_011260784.1;Parent=gene-LLC55_RS12865;Dbxref=Genbank:WP_011260784.1;Name=WP_011260784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501482.1;locus_tag=LLC55_RS12865;product=aminotransferase class V-fold PLP-dependent enzyme;protein_id=WP_011260784.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2722896 2724368 . - . ID=gene-LLC55_RS12870;Name=LLC55_RS12870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12870;old_locus_tag=LLC55_12875 NZ_CP086200.1 Protein Homology CDS 2722896 2724368 . - 0 ID=cds-WP_042465359.1;Parent=gene-LLC55_RS12870;Dbxref=Genbank:WP_042465359.1;Name=WP_042465359.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370723.1;locus_tag=LLC55_RS12870;product=ABC transporter permease subunit;protein_id=WP_042465359.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2724365 2725102 . - . ID=gene-LLC55_RS12875;Name=LLC55_RS12875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12875;old_locus_tag=LLC55_12880 NZ_CP086200.1 Protein Homology CDS 2724365 2725102 . - 0 ID=cds-WP_011409774.1;Parent=gene-LLC55_RS12875;Dbxref=Genbank:WP_011409774.1;Name=WP_011409774.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992662.1;locus_tag=LLC55_RS12875;product=ATP-binding cassette domain-containing protein;protein_id=WP_011409774.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2725151 2725483 . - . ID=gene-LLC55_RS12880;Name=LLC55_RS12880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12880;old_locus_tag=LLC55_12885 NZ_CP086200.1 Protein Homology CDS 2725151 2725483 . - 0 ID=cds-WP_011409775.1;Parent=gene-LLC55_RS12880;Dbxref=Genbank:WP_011409775.1;Name=WP_011409775.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901217.1;locus_tag=LLC55_RS12880;product=EF-hand domain-containing protein;protein_id=WP_011409775.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2725536 2726741 . - . ID=gene-LLC55_RS12885;Name=LLC55_RS12885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12885;old_locus_tag=LLC55_12890 NZ_CP086200.1 Protein Homology CDS 2725536 2726741 . - 0 ID=cds-WP_011260788.1;Parent=gene-LLC55_RS12885;Dbxref=Genbank:WP_011260788.1;Name=WP_011260788.1;Ontology_term=GO:0006629;gbkey=CDS;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379811.1;locus_tag=LLC55_RS12885;product=fatty acid desaturase;protein_id=WP_011260788.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2726901 2727746 . + . ID=gene-LLC55_RS12890;Name=LLC55_RS12890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12890;old_locus_tag=LLC55_12895 NZ_CP086200.1 Protein Homology CDS 2726901 2727746 . + 0 ID=cds-WP_011409777.1;Parent=gene-LLC55_RS12890;Dbxref=Genbank:WP_011409777.1;Name=WP_011409777.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159607.1;locus_tag=LLC55_RS12890;product=ATP-binding cassette domain-containing protein;protein_id=WP_011409777.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2727935 2728932 . + . ID=gene-LLC55_RS12895;Name=LLC55_RS12895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12895;old_locus_tag=LLC55_12900;pseudo=true NZ_CP086200.1 Protein Homology CDS 2727935 2728932 . + 0 ID=cds-LLC55_RS12895;Parent=gene-LLC55_RS12895;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912141.1;locus_tag=LLC55_RS12895;product=TIGR00266 family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2729440 2730477 . + . ID=gene-LLC55_RS12900;Name=LLC55_RS12900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12900;old_locus_tag=LLC55_12905 NZ_CP086200.1 Protein Homology CDS 2729440 2730477 . + 0 ID=cds-WP_011409779.1;Parent=gene-LLC55_RS12900;Dbxref=Genbank:WP_011409779.1;Name=WP_011409779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409779.1;locus_tag=LLC55_RS12900;product=patatin-like phospholipase family protein;protein_id=WP_011409779.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2731156 2732121 . + . ID=gene-LLC55_RS12905;Name=LLC55_RS12905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12905;old_locus_tag=LLC55_12910;pseudo=true NZ_CP086200.1 Protein Homology CDS 2731156 2732121 . + 0 ID=cds-LLC55_RS12905;Parent=gene-LLC55_RS12905;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS12905;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2732354 2732821 . - . ID=gene-LLC55_RS12910;Name=xopG;gbkey=Gene;gene=xopG;gene_biotype=protein_coding;locus_tag=LLC55_RS12910;old_locus_tag=LLC55_12915 NZ_CP086200.1 Protein Homology CDS 2732354 2732821 . - 0 ID=cds-WP_011409781.1;Parent=gene-LLC55_RS12910;Dbxref=Genbank:WP_011409781.1;Name=WP_011409781.1;Ontology_term=GO:0030254;gbkey=CDS;gene=xopG;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: protein motif:HMM:NF041347.1;locus_tag=LLC55_RS12910;product=type III secretion system effector protein XopG;protein_id=WP_011409781.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2732970 2733938 . - . ID=gene-LLC55_RS12915;Name=LLC55_RS12915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12915;old_locus_tag=LLC55_12920 NZ_CP086200.1 Protein Homology CDS 2732970 2733938 . - 0 ID=cds-WP_011258802.1-9;Parent=gene-LLC55_RS12915;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS12915;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2734486 2735528 . - . ID=gene-LLC55_RS12920;Name=LLC55_RS12920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12920;old_locus_tag=LLC55_12925 NZ_CP086200.1 Protein Homology CDS 2735333 2735528 . - 0 ID=cds-WP_229001942.1;Parent=gene-LLC55_RS12920;Dbxref=Genbank:WP_229001942.1;Name=WP_229001942.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS12920;product=IS3 family transposase;protein_id=WP_229001942.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2734486 2735333 . - 2 ID=cds-WP_229001942.1;Parent=gene-LLC55_RS12920;Dbxref=Genbank:WP_229001942.1;Name=WP_229001942.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS12920;product=IS3 family transposase;protein_id=WP_229001942.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2735659 2736102 . + . ID=gene-LLC55_RS12925;Name=LLC55_RS12925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS12925;old_locus_tag=LLC55_12930;partial=true;pseudo=true;start_range=.,2735659 NZ_CP086200.1 Protein Homology CDS 2735659 2736102 . + 0 ID=cds-LLC55_RS12925;Parent=gene-LLC55_RS12925;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS12925;partial=true;product=IS5-like element ISXo3 family transposase;pseudo=true;start_range=.,2735659;transl_table=11 NZ_CP086200.1 RefSeq gene 2736089 2736235 . - . ID=gene-LLC55_RS12930;Name=LLC55_RS12930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12930;old_locus_tag=LLC55_12935 NZ_CP086200.1 GeneMarkS-2+ CDS 2736089 2736235 . - 0 ID=cds-WP_012446412.1;Parent=gene-LLC55_RS12930;Dbxref=Genbank:WP_012446412.1;Name=WP_012446412.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS12930;product=hypothetical protein;protein_id=WP_012446412.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2736269 2736571 . - . ID=gene-LLC55_RS12935;Name=LLC55_RS12935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12935;old_locus_tag=LLC55_12940 NZ_CP086200.1 Protein Homology CDS 2736269 2736571 . - 0 ID=cds-WP_011409784.1;Parent=gene-LLC55_RS12935;Dbxref=Genbank:WP_011409784.1;Name=WP_011409784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505307.1;locus_tag=LLC55_RS12935;product=hypothetical protein;protein_id=WP_011409784.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2736717 2737520 . - . ID=gene-LLC55_RS12940;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=protein_coding;locus_tag=LLC55_RS12940;old_locus_tag=LLC55_12945 NZ_CP086200.1 Protein Homology CDS 2736717 2737520 . - 0 ID=cds-WP_011260799.1;Parent=gene-LLC55_RS12940;Dbxref=Genbank:WP_011260799.1;Name=WP_011260799.1;Ontology_term=GO:0047834;gbkey=CDS;gene=dkgB;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260799.1;locus_tag=LLC55_RS12940;product=2%2C5-didehydrogluconate reductase DkgB;protein_id=WP_011260799.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2737582 2738610 . - . ID=gene-LLC55_RS12945;Name=LLC55_RS12945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12945;old_locus_tag=LLC55_12950 NZ_CP086200.1 Protein Homology CDS 2737582 2738610 . - 0 ID=cds-WP_011260800.1;Parent=gene-LLC55_RS12945;Dbxref=Genbank:WP_011260800.1;Name=WP_011260800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345999.1;locus_tag=LLC55_RS12945;product=NADP-dependent oxidoreductase;protein_id=WP_011260800.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2738749 2739720 . - . ID=gene-LLC55_RS12950;Name=LLC55_RS12950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12950;old_locus_tag=LLC55_12955 NZ_CP086200.1 Protein Homology CDS 2738749 2739720 . - 0 ID=cds-WP_011260801.1;Parent=gene-LLC55_RS12950;Dbxref=Genbank:WP_011260801.1;Name=WP_011260801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379903.1;locus_tag=LLC55_RS12950;product=aldo/keto reductase;protein_id=WP_011260801.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2739953 2740807 . + . ID=gene-LLC55_RS12955;Name=LLC55_RS12955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12955;old_locus_tag=LLC55_12960 NZ_CP086200.1 Protein Homology CDS 2739953 2740807 . + 0 ID=cds-WP_011409786.1;Parent=gene-LLC55_RS12955;Dbxref=Genbank:WP_011409786.1;Name=WP_011409786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912328.1;locus_tag=LLC55_RS12955;product=class I SAM-dependent methyltransferase;protein_id=WP_011409786.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2740900 2741472 . + . ID=gene-LLC55_RS12960;Name=LLC55_RS12960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12960;old_locus_tag=LLC55_12965 NZ_CP086200.1 Protein Homology CDS 2740900 2741472 . + 0 ID=cds-WP_113085531.1;Parent=gene-LLC55_RS12960;Dbxref=Genbank:WP_113085531.1;Name=WP_113085531.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156080.1;locus_tag=LLC55_RS12960;product=pseudouridine synthase;protein_id=WP_113085531.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2741795 2742235 . - . ID=gene-LLC55_RS12965;Name=LLC55_RS12965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12965;old_locus_tag=LLC55_12970 NZ_CP086200.1 Protein Homology CDS 2741795 2742235 . - 0 ID=cds-WP_059317510.1;Parent=gene-LLC55_RS12965;Dbxref=Genbank:WP_059317510.1;Name=WP_059317510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160523.1;locus_tag=LLC55_RS12965;product=hypothetical protein;protein_id=WP_059317510.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2742515 2745016 . - . ID=gene-LLC55_RS12970;Name=hrpB;gbkey=Gene;gene=hrpB;gene_biotype=protein_coding;locus_tag=LLC55_RS12970;old_locus_tag=LLC55_12975 NZ_CP086200.1 Protein Homology CDS 2742515 2745016 . - 0 ID=cds-WP_069965044.1;Parent=gene-LLC55_RS12970;Dbxref=Genbank:WP_069965044.1;Name=WP_069965044.1;Ontology_term=GO:0006139,GO:0004386;gbkey=CDS;gene=hrpB;go_function=helicase activity|0004386||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050223.1;locus_tag=LLC55_RS12970;product=ATP-dependent helicase HrpB;protein_id=WP_069965044.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2745705 2746178 . - . ID=gene-LLC55_RS12975;Name=LLC55_RS12975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12975;old_locus_tag=LLC55_12980 NZ_CP086200.1 Protein Homology CDS 2745705 2746178 . - 0 ID=cds-WP_011260806.1;Parent=gene-LLC55_RS12975;Dbxref=Genbank:WP_011260806.1;Name=WP_011260806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505316.1;locus_tag=LLC55_RS12975;product=DUF1456 family protein;protein_id=WP_011260806.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2746491 2747810 . - . ID=gene-LLC55_RS12980;Name=LLC55_RS12980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12980;old_locus_tag=LLC55_12985 NZ_CP086200.1 Protein Homology CDS 2746491 2747810 . - 0 ID=cds-WP_059317512.1;Parent=gene-LLC55_RS12980;Dbxref=Genbank:WP_059317512.1;Name=WP_059317512.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374394.1;locus_tag=LLC55_RS12980;product=L-fuconate dehydratase;protein_id=WP_059317512.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2748334 2749191 . - . ID=gene-LLC55_RS12985;Name=LLC55_RS12985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12985;old_locus_tag=LLC55_12990 NZ_CP086200.1 Protein Homology CDS 2748334 2749191 . - 0 ID=cds-WP_011260808.1;Parent=gene-LLC55_RS12985;Dbxref=Genbank:WP_011260808.1;Name=WP_011260808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966483.1;locus_tag=LLC55_RS12985;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_011260808.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2749362 2750132 . - . ID=gene-LLC55_RS12990;Name=LLC55_RS12990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12990;old_locus_tag=LLC55_12995 NZ_CP086200.1 Protein Homology CDS 2749362 2750132 . - 0 ID=cds-WP_011260809.1;Parent=gene-LLC55_RS12990;Dbxref=Genbank:WP_011260809.1;Name=WP_011260809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439611.1;locus_tag=LLC55_RS12990;product=SDR family oxidoreductase;protein_id=WP_011260809.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2750129 2751001 . - . ID=gene-LLC55_RS12995;Name=LLC55_RS12995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS12995;old_locus_tag=LLC55_13000 NZ_CP086200.1 Protein Homology CDS 2750129 2751001 . - 0 ID=cds-WP_011260810.1;Parent=gene-LLC55_RS12995;Dbxref=Genbank:WP_011260810.1;Name=WP_011260810.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930619.1;locus_tag=LLC55_RS12995;product=amidohydrolase family protein;protein_id=WP_011260810.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2750998 2752008 . - . ID=gene-LLC55_RS13000;Name=LLC55_RS13000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13000;old_locus_tag=LLC55_13005 NZ_CP086200.1 Protein Homology CDS 2750998 2752008 . - 0 ID=cds-WP_011409792.1;Parent=gene-LLC55_RS13000;Dbxref=Genbank:WP_011409792.1;Name=WP_011409792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349045.1;locus_tag=LLC55_RS13000;product=aldo/keto reductase;protein_id=WP_011409792.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2752005 2752226 . - . ID=gene-LLC55_RS13005;Name=LLC55_RS13005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13005;old_locus_tag=LLC55_13010 NZ_CP086200.1 Protein Homology CDS 2752005 2752226 . - 0 ID=cds-WP_075239539.1;Parent=gene-LLC55_RS13005;Dbxref=Genbank:WP_075239539.1;Name=WP_075239539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158476.1;locus_tag=LLC55_RS13005;product=hypothetical protein;protein_id=WP_075239539.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2752321 2753235 . + . ID=gene-LLC55_RS13010;Name=LLC55_RS13010;end_range=2753235,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13010;old_locus_tag=LLC55_13015;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2752321 2753235 . + 0 ID=cds-LLC55_RS13010;Parent=gene-LLC55_RS13010;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0005975,GO:0004553;end_range=2753235,.;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914579.1;locus_tag=LLC55_RS13010;partial=true;product=family 43 glycosylhydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2753552 2753755 . - . ID=gene-LLC55_RS13015;Name=LLC55_RS13015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13015;old_locus_tag=LLC55_13020 NZ_CP086200.1 Protein Homology CDS 2753552 2753755 . - 0 ID=cds-WP_012446420.1;Parent=gene-LLC55_RS13015;Dbxref=Genbank:WP_012446420.1;Name=WP_012446420.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849177.1;locus_tag=LLC55_RS13015;product=hypothetical protein;protein_id=WP_012446420.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2753698 2754198 . + . ID=gene-LLC55_RS13020;Name=LLC55_RS13020;end_range=2754198,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13020;old_locus_tag=LLC55_13025;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2753698 2754198 . + 0 ID=cds-LLC55_RS13020;Parent=gene-LLC55_RS13020;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2754198,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914582.1;locus_tag=LLC55_RS13020;partial=true;product=DUF4424 family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2754192 2754267 . - . ID=gene-LLC55_RS13025;Name=LLC55_RS13025;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS13025;old_locus_tag=LLC55_13030 NZ_CP086200.1 cmsearch ncRNA 2754192 2754267 . - . ID=rna-LLC55_RS13025;Parent=gene-LLC55_RS13025;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13025;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2754192 2754267 . - . ID=exon-LLC55_RS13025-1;Parent=rna-LLC55_RS13025;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13025;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2754671 2755339 . - . ID=gene-LLC55_RS13030;Name=LLC55_RS13030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13030;old_locus_tag=LLC55_13035 NZ_CP086200.1 Protein Homology CDS 2754671 2755339 . - 0 ID=cds-WP_011409794.1;Parent=gene-LLC55_RS13030;Dbxref=Genbank:WP_011409794.1;Name=WP_011409794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156036.1;locus_tag=LLC55_RS13030;product=response regulator transcription factor;protein_id=WP_011409794.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2755601 2757544 . - . ID=gene-LLC55_RS13035;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=LLC55_RS13035;old_locus_tag=LLC55_13040 NZ_CP086200.1 Protein Homology CDS 2755601 2757544 . - 0 ID=cds-WP_011409795.1;Parent=gene-LLC55_RS13035;Dbxref=Genbank:WP_011409795.1;Name=WP_011409795.1;Ontology_term=GO:0019427,GO:0003987;gbkey=CDS;gene=acs;go_function=acetate-CoA ligase activity|0003987||IEA;go_process=acetyl-CoA biosynthetic process from acetate|0019427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003466986.1;locus_tag=LLC55_RS13035;product=acetate--CoA ligase;protein_id=WP_011409795.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2757842 2759232 . + . ID=gene-LLC55_RS13040;Name=LLC55_RS13040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13040;old_locus_tag=LLC55_13045;pseudo=true NZ_CP086200.1 Protein Homology CDS 2757842 2759232 . + 0 ID=cds-LLC55_RS13040;Parent=gene-LLC55_RS13040;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575984.1;locus_tag=LLC55_RS13040;product=DcaP family trimeric outer membrane transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2759319 2759636 . + . ID=gene-LLC55_RS13045;Name=LLC55_RS13045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13045;old_locus_tag=LLC55_13050 NZ_CP086200.1 Protein Homology CDS 2759319 2759636 . + 0 ID=cds-WP_011409798.1;Parent=gene-LLC55_RS13045;Dbxref=Genbank:WP_011409798.1;Name=WP_011409798.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451668.1;locus_tag=LLC55_RS13045;product=DUF485 domain-containing protein;protein_id=WP_011409798.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2759633 2761360 . + . ID=gene-LLC55_RS13050;Name=LLC55_RS13050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13050;old_locus_tag=LLC55_13055 NZ_CP086200.1 Protein Homology CDS 2759633 2761360 . + 0 ID=cds-WP_011260819.1;Parent=gene-LLC55_RS13050;Dbxref=Genbank:WP_011260819.1;Name=WP_011260819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304713.1;locus_tag=LLC55_RS13050;product=cation acetate symporter;protein_id=WP_011260819.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2761820 2761896 . - . ID=gene-LLC55_RS13055;Name=LLC55_RS13055;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS13055;old_locus_tag=LLC55_13060 NZ_CP086200.1 cmsearch ncRNA 2761820 2761896 . - . ID=rna-LLC55_RS13055;Parent=gene-LLC55_RS13055;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13055;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2761820 2761896 . - . ID=exon-LLC55_RS13055-1;Parent=rna-LLC55_RS13055;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13055;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 2761971 2762620 . - . ID=gene-LLC55_RS13060;Name=LLC55_RS13060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13060;old_locus_tag=LLC55_13065;partial=true;pseudo=true;start_range=.,2761971 NZ_CP086200.1 Protein Homology CDS 2761971 2762620 . - 0 ID=cds-LLC55_RS13060;Parent=gene-LLC55_RS13060;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159738.1;locus_tag=LLC55_RS13060;partial=true;product=ROK family protein;pseudo=true;start_range=.,2761971;transl_table=11 NZ_CP086200.1 RefSeq gene 2763026 2763805 . + . ID=gene-LLC55_RS13065;Name=xth;gbkey=Gene;gene=xth;gene_biotype=protein_coding;locus_tag=LLC55_RS13065;old_locus_tag=LLC55_13070 NZ_CP086200.1 Protein Homology CDS 2763026 2763805 . + 0 ID=cds-WP_011409799.1;Parent=gene-LLC55_RS13065;Dbxref=Genbank:WP_011409799.1;Name=WP_011409799.1;Ontology_term=GO:0006281,GO:0008853;gbkey=CDS;gene=xth;go_function=exodeoxyribonuclease III activity|0008853||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995484.1;locus_tag=LLC55_RS13065;product=exodeoxyribonuclease III;protein_id=WP_011409799.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2763802 2764239 . + . ID=gene-LLC55_RS13070;Name=LLC55_RS13070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13070;old_locus_tag=LLC55_13075 NZ_CP086200.1 Protein Homology CDS 2763802 2764239 . + 0 ID=cds-WP_011409800.1;Parent=gene-LLC55_RS13070;Dbxref=Genbank:WP_011409800.1;Name=WP_011409800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409800.1;locus_tag=LLC55_RS13070;product=GFA family protein;protein_id=WP_011409800.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2764301 2764552 . - . ID=gene-LLC55_RS13075;Name=LLC55_RS13075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13075;old_locus_tag=LLC55_13080 NZ_CP086200.1 Protein Homology CDS 2764301 2764552 . - 0 ID=cds-WP_011409801.1;Parent=gene-LLC55_RS13075;Dbxref=Genbank:WP_011409801.1;Name=WP_011409801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409801.1;locus_tag=LLC55_RS13075;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_011409801.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2764679 2765275 . + . ID=gene-LLC55_RS13080;Name=LLC55_RS13080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13080;old_locus_tag=LLC55_13085 NZ_CP086200.1 Protein Homology CDS 2764679 2765275 . + 0 ID=cds-WP_014501576.1;Parent=gene-LLC55_RS13080;Dbxref=Genbank:WP_014501576.1;Name=WP_014501576.1;Ontology_term=GO:0000287,GO:0008897;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575969.1;locus_tag=LLC55_RS13080;product=4'-phosphopantetheinyl transferase superfamily protein;protein_id=WP_014501576.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2765294 2766865 . - . ID=gene-LLC55_RS13085;Name=LLC55_RS13085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13085;old_locus_tag=LLC55_13090 NZ_CP086200.1 Protein Homology CDS 2765294 2766865 . - 0 ID=cds-WP_069960053.1;Parent=gene-LLC55_RS13085;Dbxref=Genbank:WP_069960053.1;Name=WP_069960053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501577.1;locus_tag=LLC55_RS13085;product=alkaline phosphatase D family protein;protein_id=WP_069960053.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2767042 2768670 . - . ID=gene-LLC55_RS13090;Name=LLC55_RS13090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13090;old_locus_tag=LLC55_13095 NZ_CP086200.1 Protein Homology CDS 2767042 2768670 . - 0 ID=cds-WP_011409802.1;Parent=gene-LLC55_RS13090;Dbxref=Genbank:WP_011409802.1;Name=WP_011409802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901821.1;locus_tag=LLC55_RS13090;product=alkaline phosphatase D family protein;protein_id=WP_011409802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2768893 2769531 . + . ID=gene-LLC55_RS13095;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=protein_coding;locus_tag=LLC55_RS13095;old_locus_tag=LLC55_13100 NZ_CP086200.1 Protein Homology CDS 2768893 2769531 . + 0 ID=cds-WP_011409803.1;Parent=gene-LLC55_RS13095;Dbxref=Genbank:WP_011409803.1;Name=WP_011409803.1;Ontology_term=GO:0031167,GO:0046118,GO:0008168,GO:0005575;gbkey=CDS;gene=rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995473.1;locus_tag=LLC55_RS13095;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;protein_id=WP_011409803.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2769885 2770295 . + . ID=gene-LLC55_RS13100;Name=LLC55_RS13100;end_range=2770295,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13100;old_locus_tag=LLC55_13105;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2769885 2770295 . + 0 ID=cds-LLC55_RS13100;Parent=gene-LLC55_RS13100;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2770295,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575963.1;locus_tag=LLC55_RS13100;partial=true;product=DUF885 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2770600 2770959 . + . ID=gene-LLC55_RS13105;Name=LLC55_RS13105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13105;old_locus_tag=LLC55_13110 NZ_CP086200.1 GeneMarkS-2+ CDS 2770600 2770959 . + 0 ID=cds-WP_011409805.1;Parent=gene-LLC55_RS13105;Dbxref=Genbank:WP_011409805.1;Name=WP_011409805.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS13105;product=hypothetical protein;protein_id=WP_011409805.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2771144 2771380 . + . ID=gene-LLC55_RS13110;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=LLC55_RS13110;old_locus_tag=LLC55_13115 NZ_CP086200.1 Protein Homology CDS 2771144 2771380 . + 0 ID=cds-WP_002809459.1;Parent=gene-LLC55_RS13110;Dbxref=Genbank:WP_002809459.1;Name=WP_002809459.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rpmB;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185625.1;locus_tag=LLC55_RS13110;product=50S ribosomal protein L28;protein_id=WP_002809459.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2771394 2771561 . + . ID=gene-LLC55_RS13115;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=LLC55_RS13115;old_locus_tag=LLC55_13120 NZ_CP086200.1 Protein Homology CDS 2771394 2771561 . + 0 ID=cds-WP_002809462.1;Parent=gene-LLC55_RS13115;Dbxref=Genbank:WP_002809462.1;Name=WP_002809462.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmG;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001051801.1;locus_tag=LLC55_RS13115;product=50S ribosomal protein L33;protein_id=WP_002809462.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2771994 2772446 . - . ID=gene-LLC55_RS13120;Name=LLC55_RS13120;end_range=2772446,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13120;old_locus_tag=LLC55_13125;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2771994 2772446 . - 0 ID=cds-LLC55_RS13120;Parent=gene-LLC55_RS13120;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2772446,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572519.1;locus_tag=LLC55_RS13120;partial=true;product=amidohydrolase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2772458 2773693 . - . ID=gene-LLC55_RS13125;Name=LLC55_RS13125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13125;old_locus_tag=LLC55_13130 NZ_CP086200.1 Protein Homology CDS 2772458 2773693 . - 0 ID=cds-WP_011257310.1-3;Parent=gene-LLC55_RS13125;Dbxref=Genbank:WP_011257310.1;Name=WP_011257310.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS13125;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011257310.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2773755 2774336 . - . ID=gene-LLC55_RS13130;Name=LLC55_RS13130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13130;old_locus_tag=LLC55_13135;partial=true;pseudo=true;start_range=.,2773755 NZ_CP086200.1 Protein Homology CDS 2773755 2774336 . - 0 ID=cds-LLC55_RS13130;Parent=gene-LLC55_RS13130;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572519.1;locus_tag=LLC55_RS13130;partial=true;product=amidohydrolase family protein;pseudo=true;start_range=.,2773755;transl_table=11 NZ_CP086200.1 RefSeq gene 2774565 2775620 . - . ID=gene-LLC55_RS13135;Name=LLC55_RS13135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13135;old_locus_tag=LLC55_13140 NZ_CP086200.1 Protein Homology CDS 2774565 2775620 . - 0 ID=cds-WP_011260831.1;Parent=gene-LLC55_RS13135;Dbxref=Genbank:WP_011260831.1;Name=WP_011260831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091428.1;locus_tag=LLC55_RS13135;product=4-oxalomesaconate tautomerase;protein_id=WP_011260831.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2775613 2776284 . - . ID=gene-LLC55_RS13140;Name=LLC55_RS13140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13140;old_locus_tag=LLC55_13145 NZ_CP086200.1 Protein Homology CDS 2775613 2776284 . - 0 ID=cds-WP_011260832.1;Parent=gene-LLC55_RS13140;Dbxref=Genbank:WP_011260832.1;Name=WP_011260832.1;Ontology_term=GO:0047443;gbkey=CDS;go_function=4-hydroxy-4-methyl-2-oxoglutarate aldolase activity|0047443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489876.1;locus_tag=LLC55_RS13140;product=4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase;protein_id=WP_011260832.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2776382 2777689 . + . ID=gene-LLC55_RS13145;Name=LLC55_RS13145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13145;old_locus_tag=LLC55_13150 NZ_CP086200.1 Protein Homology CDS 2776382 2777689 . + 0 ID=cds-WP_011260833.1;Parent=gene-LLC55_RS13145;Dbxref=Genbank:WP_011260833.1;Name=WP_011260833.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157746.1;locus_tag=LLC55_RS13145;product=LysR family transcriptional regulator;protein_id=WP_011260833.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2777706 2779124 . + . ID=gene-LLC55_RS13150;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=LLC55_RS13150;old_locus_tag=LLC55_13155 NZ_CP086200.1 Protein Homology CDS 2777706 2779124 . + 0 ID=cds-WP_011409807.1;Parent=gene-LLC55_RS13150;Dbxref=Genbank:WP_011409807.1;Name=WP_011409807.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902730.1;locus_tag=LLC55_RS13150;product=cardiolipin synthase;protein_id=WP_011409807.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2779195 2779529 . - . ID=gene-LLC55_RS13155;Name=LLC55_RS13155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13155;old_locus_tag=LLC55_13160;pseudo=true NZ_CP086200.1 Protein Homology CDS 2779195 2779529 . - 0 ID=cds-LLC55_RS13155;Parent=gene-LLC55_RS13155;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301189.1;locus_tag=LLC55_RS13155;product=glyoxalase/bleomycin resistance/dioxygenase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2779696 2781090 . + . ID=gene-LLC55_RS13160;Name=LLC55_RS13160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13160;old_locus_tag=LLC55_13165 NZ_CP086200.1 Protein Homology CDS 2779696 2781090 . + 0 ID=cds-WP_011409808.1;Parent=gene-LLC55_RS13160;Dbxref=Genbank:WP_011409808.1;Name=WP_011409808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446436.1;locus_tag=LLC55_RS13160;product=FAD/NAD(P)-binding protein;protein_id=WP_011409808.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2781438 2783624 . + . ID=gene-LLC55_RS13165;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;gene_synonym=mutU,recL;locus_tag=LLC55_RS13165;old_locus_tag=LLC55_13170 NZ_CP086200.1 Protein Homology CDS 2781438 2783624 . + 0 ID=cds-WP_011260838.1;Parent=gene-LLC55_RS13165;Dbxref=Genbank:WP_011260838.1;Name=WP_011260838.1;Ontology_term=GO:0006268,GO:0003677,GO:0003678,GO:0005524,GO:0016787;gbkey=CDS;gene=uvrD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;go_process=DNA unwinding involved in DNA replication|0006268||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809467.1;locus_tag=LLC55_RS13165;product=DNA helicase II;protein_id=WP_011260838.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2783800 2784024 . - . ID=gene-LLC55_RS13170;Name=LLC55_RS13170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13170;old_locus_tag=LLC55_13175 NZ_CP086200.1 Protein Homology CDS 2783800 2784024 . - 0 ID=cds-WP_012446438.1;Parent=gene-LLC55_RS13170;Dbxref=Genbank:WP_012446438.1;Name=WP_012446438.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373694.1;locus_tag=LLC55_RS13170;product=hypothetical protein;protein_id=WP_012446438.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2784605 2785570 . - . ID=gene-LLC55_RS13175;Name=LLC55_RS13175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13175;old_locus_tag=LLC55_13180 NZ_CP086200.1 Protein Homology CDS 2784605 2785570 . - 0 ID=cds-WP_109182049.1;Parent=gene-LLC55_RS13175;Dbxref=Genbank:WP_109182049.1;Name=WP_109182049.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS13175;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182049.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2785746 2787161 . - . ID=gene-LLC55_RS13180;Name=LLC55_RS13180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13180;old_locus_tag=LLC55_13185 NZ_CP086200.1 Protein Homology CDS 2785746 2787161 . - 0 ID=cds-WP_011409811.1;Parent=gene-LLC55_RS13180;Dbxref=Genbank:WP_011409811.1;Name=WP_011409811.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482277.1;locus_tag=LLC55_RS13180;product=amino acid permease;protein_id=WP_011409811.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2787640 2788295 . + . ID=gene-LLC55_RS13185;Name=LLC55_RS13185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13185;old_locus_tag=LLC55_13190;partial=true;pseudo=true;start_range=.,2787640 NZ_CP086200.1 Protein Homology CDS 2787640 2788295 . + 0 ID=cds-LLC55_RS13185;Parent=gene-LLC55_RS13185;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006113,GO:0004024,GO:0008270;gbkey=CDS;go_function=alcohol dehydrogenase activity%2C zinc-dependent|0004024||IEA,zinc ion binding|0008270||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573087.1;locus_tag=LLC55_RS13185;partial=true;product=zinc-binding alcohol dehydrogenase family protein;pseudo=true;start_range=.,2787640;transl_table=11 NZ_CP086200.1 RefSeq gene 2788480 2789976 . + . ID=gene-LLC55_RS13190;Name=rmuC;gbkey=Gene;gene=rmuC;gene_biotype=protein_coding;locus_tag=LLC55_RS13190;old_locus_tag=LLC55_13195 NZ_CP086200.1 Protein Homology CDS 2788480 2789976 . + 0 ID=cds-WP_027704005.1;Parent=gene-LLC55_RS13190;Dbxref=Genbank:WP_027704005.1;Name=WP_027704005.1;gbkey=CDS;gene=rmuC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156007.1;locus_tag=LLC55_RS13190;product=DNA recombination protein RmuC;protein_id=WP_027704005.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2790382 2790744 . + . ID=gene-LLC55_RS13195;Name=LLC55_RS13195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13195;old_locus_tag=LLC55_13200 NZ_CP086200.1 Protein Homology CDS 2790382 2790744 . + 0 ID=cds-WP_041182970.1;Parent=gene-LLC55_RS13195;Dbxref=Genbank:WP_041182970.1;Name=WP_041182970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349194.1;locus_tag=LLC55_RS13195;product=hypothetical protein;protein_id=WP_041182970.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2791122 2791667 . + . ID=gene-LLC55_RS13200;Name=LLC55_RS13200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13200;old_locus_tag=LLC55_13205 NZ_CP086200.1 Protein Homology CDS 2791122 2791667 . + 0 ID=cds-WP_011409815.1;Parent=gene-LLC55_RS13200;Dbxref=Genbank:WP_011409815.1;Name=WP_011409815.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409815.1;locus_tag=LLC55_RS13200;product=glutathione peroxidase;protein_id=WP_011409815.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2791763 2793139 . - . ID=gene-LLC55_RS13205;Name=LLC55_RS13205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13205;old_locus_tag=LLC55_13210;pseudo=true NZ_CP086200.1 Protein Homology CDS 2791763 2793139 . - 0 ID=cds-LLC55_RS13205;Parent=gene-LLC55_RS13205;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS13205;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2793329 2794647 . + . ID=gene-LLC55_RS13210;Name=LLC55_RS13210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13210;old_locus_tag=LLC55_13215;pseudo=true NZ_CP086200.1 Protein Homology CDS 2793329 2794647 . + 0 ID=cds-LLC55_RS13210;Parent=gene-LLC55_RS13210;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS13210;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2794920 2796047 . - . ID=gene-LLC55_RS13215;Name=LLC55_RS13215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13215;old_locus_tag=LLC55_13220 NZ_CP086200.1 Protein Homology CDS 2794920 2796047 . - 0 ID=cds-WP_011260845.1;Parent=gene-LLC55_RS13215;Dbxref=Genbank:WP_011260845.1;Name=WP_011260845.1;Ontology_term=GO:0003824,GO:0051536;gbkey=CDS;go_function=catalytic activity|0003824||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088871.1;locus_tag=LLC55_RS13215;product=PA0069 family radical SAM protein;protein_id=WP_011260845.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2796233 2796544 . - . ID=gene-LLC55_RS13220;Name=LLC55_RS13220;end_range=2796544,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13220;old_locus_tag=LLC55_13225;partial=true;pseudo=true;start_range=.,2796233 NZ_CP086200.1 Protein Homology CDS 2796233 2796544 . - 0 ID=cds-LLC55_RS13220;Parent=gene-LLC55_RS13220;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2796544,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482181.1;locus_tag=LLC55_RS13220;partial=true;product=2OG-Fe(II) oxygenase;pseudo=true;start_range=.,2796233;transl_table=11 NZ_CP086200.1 RefSeq gene 2796903 2798243 . - . ID=gene-LLC55_RS13225;Name=LLC55_RS13225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13225;old_locus_tag=LLC55_13230 NZ_CP086200.1 Protein Homology CDS 2796903 2798243 . - 0 ID=cds-WP_011409820.1;Parent=gene-LLC55_RS13225;Dbxref=Genbank:WP_011409820.1;Name=WP_011409820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968187.1;locus_tag=LLC55_RS13225;product=outer membrane protein transport protein;protein_id=WP_011409820.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2798460 2799152 . + . ID=gene-LLC55_RS13230;Name=LLC55_RS13230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13230;old_locus_tag=LLC55_13235 NZ_CP086200.1 Protein Homology CDS 2798460 2799152 . + 0 ID=cds-WP_011409821.1;Parent=gene-LLC55_RS13230;Dbxref=Genbank:WP_011409821.1;Name=WP_011409821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301614.1;locus_tag=LLC55_RS13230;product=rhomboid family intramembrane serine protease;protein_id=WP_011409821.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2799269 2799589 . + . ID=gene-LLC55_RS13235;Name=LLC55_RS13235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13235;old_locus_tag=LLC55_13240 NZ_CP086200.1 Protein Homology CDS 2799269 2799589 . + 0 ID=cds-WP_011409822.1;Parent=gene-LLC55_RS13235;Dbxref=Genbank:WP_011409822.1;Name=WP_011409822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088873.1;locus_tag=LLC55_RS13235;product=DUF1820 family protein;protein_id=WP_011409822.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2799589 2800581 . + . ID=gene-LLC55_RS13240;Name=LLC55_RS13240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13240;old_locus_tag=LLC55_13245 NZ_CP086200.1 Protein Homology CDS 2799589 2800581 . + 0 ID=cds-WP_011260850.1;Parent=gene-LLC55_RS13240;Dbxref=Genbank:WP_011260850.1;Name=WP_011260850.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482169.1;locus_tag=LLC55_RS13240;product=D-2-hydroxyacid dehydrogenase family protein;protein_id=WP_011260850.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2800807 2800883 . + . ID=gene-LLC55_RS13245;Name=LLC55_RS13245;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS13245;old_locus_tag=LLC55_13250 NZ_CP086200.1 cmsearch ncRNA 2800807 2800883 . + . ID=rna-LLC55_RS13245;Parent=gene-LLC55_RS13245;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13245;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2800807 2800883 . + . ID=exon-LLC55_RS13245-1;Parent=rna-LLC55_RS13245;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13245;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2800888 2802411 . - . ID=gene-LLC55_RS13250;Name=LLC55_RS13250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13250;old_locus_tag=LLC55_13255 NZ_CP086200.1 Protein Homology CDS 2800888 2802411 . - 0 ID=cds-WP_011409823.1;Parent=gene-LLC55_RS13250;Dbxref=Genbank:WP_011409823.1;Name=WP_011409823.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376383.1;locus_tag=LLC55_RS13250;product=S41 family peptidase;protein_id=WP_011409823.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2802516 2803814 . - . ID=gene-LLC55_RS13255;Name=LLC55_RS13255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13255;old_locus_tag=LLC55_13260 NZ_CP086200.1 Protein Homology CDS 2802516 2803814 . - 0 ID=cds-WP_027703885.1;Parent=gene-LLC55_RS13255;Dbxref=Genbank:WP_027703885.1;Name=WP_027703885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850464.1;locus_tag=LLC55_RS13255;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=WP_027703885.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2803912 2804568 . + . ID=gene-LLC55_RS13260;Name=LLC55_RS13260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13260;old_locus_tag=LLC55_13265 NZ_CP086200.1 Protein Homology CDS 2803912 2804568 . + 0 ID=cds-WP_011260853.1;Parent=gene-LLC55_RS13260;Dbxref=Genbank:WP_011260853.1;Name=WP_011260853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260853.1;locus_tag=LLC55_RS13260;product=hypothetical protein;protein_id=WP_011260853.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2804719 2806530 . + . ID=gene-LLC55_RS13265;Name=LLC55_RS13265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13265;old_locus_tag=LLC55_13270 NZ_CP086200.1 Protein Homology CDS 2804719 2806530 . + 0 ID=cds-WP_011409825.1;Parent=gene-LLC55_RS13265;Dbxref=Genbank:WP_011409825.1;Name=WP_011409825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118134.1;locus_tag=LLC55_RS13265;product=M28 family metallopeptidase;protein_id=WP_011409825.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2806687 2807028 . - . ID=gene-LLC55_RS13270;Name=LLC55_RS13270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13270;old_locus_tag=LLC55_13275;partial=true;pseudo=true;start_range=.,2806687 NZ_CP086200.1 Protein Homology CDS 2806687 2807028 . - 0 ID=cds-LLC55_RS13270;Parent=gene-LLC55_RS13270;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166071.1;locus_tag=LLC55_RS13270;partial=true;product=PepSY domain-containing protein;pseudo=true;start_range=.,2806687;transl_table=11 NZ_CP086200.1 RefSeq gene 2807207 2808526 . - . ID=gene-LLC55_RS13275;Name=LLC55_RS13275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13275;old_locus_tag=LLC55_13280 NZ_CP086200.1 Protein Homology CDS 2807207 2808526 . - 0 ID=cds-WP_011409361.1;Parent=gene-LLC55_RS13275;Dbxref=Genbank:WP_011409361.1;Name=WP_011409361.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS13275;product=IS701-like element ISXo15 family transposase;protein_id=WP_011409361.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2808716 2809891 . + . ID=gene-LLC55_RS13280;Name=LLC55_RS13280;end_range=2809891,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13280;old_locus_tag=LLC55_13285;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2808716 2809891 . + 0 ID=cds-LLC55_RS13280;Parent=gene-LLC55_RS13280;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=2809891,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS13280;partial=true;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2809939 2811120 . - . ID=gene-LLC55_RS13285;Name=LLC55_RS13285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13285;old_locus_tag=LLC55_13290 NZ_CP086200.1 Protein Homology CDS 2809939 2811120 . - 0 ID=cds-WP_042465377.1;Parent=gene-LLC55_RS13285;Dbxref=Genbank:WP_042465377.1;Name=WP_042465377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112489.1;locus_tag=LLC55_RS13285;product=DUF3322 and DUF2220 domain-containing protein;protein_id=WP_042465377.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2811218 2814649 . - . ID=gene-LLC55_RS13290;Name=LLC55_RS13290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13290;old_locus_tag=LLC55_13295 NZ_CP086200.1 Protein Homology CDS 2811218 2814649 . - 0 ID=cds-WP_011409829.1;Parent=gene-LLC55_RS13290;Dbxref=Genbank:WP_011409829.1;Name=WP_011409829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446454.1;locus_tag=LLC55_RS13290;product=SbcC/MukB-like Walker B domain-containing protein;protein_id=WP_011409829.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2814797 2815495 . - . ID=gene-LLC55_RS13295;Name=LLC55_RS13295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13295;old_locus_tag=LLC55_13300 NZ_CP086200.1 Protein Homology CDS 2814797 2815495 . - 0 ID=cds-WP_011409830.1;Parent=gene-LLC55_RS13295;Dbxref=Genbank:WP_011409830.1;Name=WP_011409830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260861.1;locus_tag=LLC55_RS13295;product=DUF4194 domain-containing protein;protein_id=WP_011409830.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2815479 2816951 . - . ID=gene-LLC55_RS13300;Name=LLC55_RS13300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13300;old_locus_tag=LLC55_13305 NZ_CP086200.1 Protein Homology CDS 2815479 2816951 . - 0 ID=cds-WP_011409831.1;Parent=gene-LLC55_RS13300;Dbxref=Genbank:WP_011409831.1;Name=WP_011409831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301721.1;locus_tag=LLC55_RS13300;product=DUF3375 domain-containing protein;protein_id=WP_011409831.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2816948 2817496 . - . ID=gene-LLC55_RS13305;Name=LLC55_RS13305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13305;old_locus_tag=LLC55_13310 NZ_CP086200.1 Protein Homology CDS 2816948 2817496 . - 0 ID=cds-WP_229001928.1;Parent=gene-LLC55_RS13305;Dbxref=Genbank:WP_229001928.1;Name=WP_229001928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409832.1;locus_tag=LLC55_RS13305;product=DUF4276 family protein;protein_id=WP_229001928.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2817535 2818731 . - . ID=gene-LLC55_RS13310;Name=LLC55_RS13310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13310;old_locus_tag=LLC55_13315 NZ_CP086200.1 Protein Homology CDS 2817535 2818731 . - 0 ID=cds-WP_011409833.1;Parent=gene-LLC55_RS13310;Dbxref=Genbank:WP_011409833.1;Name=WP_011409833.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381256.1;locus_tag=LLC55_RS13310;product=AAA family ATPase;protein_id=WP_011409833.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2818805 2819407 . - . ID=gene-LLC55_RS13315;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=LLC55_RS13315;old_locus_tag=LLC55_13320 NZ_CP086200.1 Protein Homology CDS 2818805 2819407 . - 0 ID=cds-WP_041182832.1;Parent=gene-LLC55_RS13315;Dbxref=Genbank:WP_041182832.1;Name=WP_041182832.1;Ontology_term=GO:0042559,GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=pteridine-containing compound biosynthetic process|0042559||IEA,tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158364.1;locus_tag=LLC55_RS13315;product=GTP cyclohydrolase I FolE;protein_id=WP_041182832.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2819580 2820026 . + . ID=gene-LLC55_RS13320;Name=LLC55_RS13320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13320;old_locus_tag=LLC55_13325 NZ_CP086200.1 Protein Homology CDS 2819580 2820026 . + 0 ID=cds-WP_228329753.1;Parent=gene-LLC55_RS13320;Dbxref=Genbank:WP_228329753.1;Name=WP_228329753.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452469.1;locus_tag=LLC55_RS13320;product=MarR family transcriptional regulator;protein_id=WP_228329753.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2820068 2820285 . + . ID=gene-LLC55_RS23375;Name=LLC55_RS23375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23375;pseudo=true NZ_CP086200.1 Protein Homology CDS 2820068 2820285 . + 0 ID=cds-LLC55_RS23375;Parent=gene-LLC55_RS23375;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158363.1;locus_tag=LLC55_RS23375;product=DUF1656 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2820291 2820410 . + . ID=gene-LLC55_RS23380;Name=LLC55_RS23380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23380;partial=true;pseudo=true;start_range=.,2820291 NZ_CP086200.1 Protein Homology CDS 2820291 2820410 . + 0 ID=cds-LLC55_RS23380;Parent=gene-LLC55_RS23380;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158363.1;locus_tag=LLC55_RS23380;partial=true;product=DUF1656 domain-containing protein;pseudo=true;start_range=.,2820291;transl_table=11 NZ_CP086200.1 RefSeq gene 2820395 2820535 . + . ID=gene-LLC55_RS13330;Name=LLC55_RS13330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13330;old_locus_tag=LLC55_13335 NZ_CP086200.1 Protein Homology CDS 2820395 2820535 . + 0 ID=cds-WP_228329597.1;Parent=gene-LLC55_RS13330;Dbxref=Genbank:WP_228329597.1;Name=WP_228329597.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364281.1;locus_tag=LLC55_RS13330;product=DUF1656 domain-containing protein;protein_id=WP_228329597.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2820766 2821155 . + . ID=gene-LLC55_RS13335;Name=LLC55_RS13335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13335;old_locus_tag=LLC55_13340;partial=true;pseudo=true;start_range=.,2820766 NZ_CP086200.1 Protein Homology CDS 2820766 2821155 . + 0 ID=cds-LLC55_RS13335;Parent=gene-LLC55_RS13335;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349148.1;locus_tag=LLC55_RS13335;partial=true;product=TolC family protein;pseudo=true;start_range=.,2820766;transl_table=11 NZ_CP086200.1 RefSeq gene 2821152 2821718 . + . ID=gene-LLC55_RS13340;Name=LLC55_RS13340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13340;old_locus_tag=LLC55_13345 NZ_CP086200.1 Protein Homology CDS 2821152 2821718 . + 0 ID=cds-WP_011409837.1;Parent=gene-LLC55_RS13340;Dbxref=Genbank:WP_011409837.1;Name=WP_011409837.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301717.1;locus_tag=LLC55_RS13340;product=FUSC family protein;protein_id=WP_011409837.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2821994 2823355 . - . ID=gene-LLC55_RS13345;Name=LLC55_RS13345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13345;old_locus_tag=LLC55_13350 NZ_CP086200.1 Protein Homology CDS 2821994 2823355 . - 0 ID=cds-WP_011409838.1;Parent=gene-LLC55_RS13345;Dbxref=Genbank:WP_011409838.1;Name=WP_011409838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301716.1;locus_tag=LLC55_RS13345;product=MFS transporter;protein_id=WP_011409838.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2823469 2823991 . - . ID=gene-LLC55_RS13350;Name=LLC55_RS13350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13350;old_locus_tag=LLC55_13355;pseudo=true NZ_CP086200.1 Protein Homology CDS 2823469 2823991 . - 0 ID=cds-LLC55_RS13350;Parent=gene-LLC55_RS13350;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158362.1;locus_tag=LLC55_RS13350;product=YdeI/OmpD-associated family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2824021 2824794 . + . ID=gene-LLC55_RS13355;Name=LLC55_RS13355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13355;old_locus_tag=LLC55_13360;partial=true;pseudo=true;start_range=.,2824021 NZ_CP086200.1 Protein Homology CDS 2824021 2824794 . + 0 ID=cds-LLC55_RS13355;Parent=gene-LLC55_RS13355;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238145.1;locus_tag=LLC55_RS13355;partial=true;product=phospholipase D-like domain-containing protein;pseudo=true;start_range=.,2824021;transl_table=11 NZ_CP086200.1 RefSeq gene 2824825 2825331 . - . ID=gene-LLC55_RS13360;Name=LLC55_RS13360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13360;old_locus_tag=LLC55_13365 NZ_CP086200.1 Protein Homology CDS 2824825 2825331 . - 0 ID=cds-WP_165967665.1;Parent=gene-LLC55_RS13360;Dbxref=Genbank:WP_165967665.1;Name=WP_165967665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409841.1;locus_tag=LLC55_RS13360;product=hypothetical protein;protein_id=WP_165967665.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2825605 2825811 . + . ID=gene-LLC55_RS13365;Name=LLC55_RS13365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13365;old_locus_tag=LLC55_13370 NZ_CP086200.1 Protein Homology CDS 2825605 2825811 . + 0 ID=cds-WP_069960058.1;Parent=gene-LLC55_RS13365;Dbxref=Genbank:WP_069960058.1;Name=WP_069960058.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364297.1;locus_tag=LLC55_RS13365;product=hypothetical protein;protein_id=WP_069960058.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2825798 2826910 . + . ID=gene-LLC55_RS13370;Name=LLC55_RS13370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13370;old_locus_tag=LLC55_13375 NZ_CP086200.1 Protein Homology CDS 2825798 2826910 . + 0 ID=cds-WP_069960059.1;Parent=gene-LLC55_RS13370;Dbxref=Genbank:WP_069960059.1;Name=WP_069960059.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158361.1;locus_tag=LLC55_RS13370;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_069960059.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2827138 2827362 . - . ID=gene-LLC55_RS13375;Name=LLC55_RS13375;end_range=2827362,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13375;old_locus_tag=LLC55_13380;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2827138 2827362 . - 0 ID=cds-LLC55_RS13375;Parent=gene-LLC55_RS13375;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2827362,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS13375;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2827374 2828732 . - . ID=gene-LLC55_RS13380;Name=LLC55_RS13380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13380;old_locus_tag=LLC55_13385;partial=true;pseudo=true;start_range=.,2827374 NZ_CP086200.1 Protein Homology CDS 2827374 2828732 . - 0 ID=cds-LLC55_RS13380;Parent=gene-LLC55_RS13380;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS13380;partial=true;product=IS5 family transposase;pseudo=true;start_range=.,2827374;transl_table=11 NZ_CP086200.1 RefSeq gene 2828848 2829105 . - . ID=gene-LLC55_RS13385;Name=LLC55_RS13385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13385;old_locus_tag=LLC55_13390 NZ_CP086200.1 GeneMarkS-2+ CDS 2828848 2829105 . - 0 ID=cds-WP_228329598.1;Parent=gene-LLC55_RS13385;Dbxref=Genbank:WP_228329598.1;Name=WP_228329598.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS13385;product=hypothetical protein;protein_id=WP_228329598.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2829262 2830014 . - . ID=gene-LLC55_RS13390;Name=LLC55_RS13390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13390;old_locus_tag=LLC55_13395 NZ_CP086200.1 Protein Homology CDS 2829262 2830014 . - 0 ID=cds-WP_049756351.1;Parent=gene-LLC55_RS13390;Dbxref=Genbank:WP_049756351.1;Name=WP_049756351.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026917.2;locus_tag=LLC55_RS13390;product=Imm52 family immunity protein;protein_id=WP_049756351.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2830011 2830718 . - . ID=gene-LLC55_RS13395;Name=LLC55_RS13395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13395;old_locus_tag=LLC55_13400 NZ_CP086200.1 Protein Homology CDS 2830011 2830718 . - 0 ID=cds-WP_011409848.1;Parent=gene-LLC55_RS13395;Dbxref=Genbank:WP_011409848.1;Name=WP_011409848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408157.1;locus_tag=LLC55_RS13395;product=Tox-REase-5 domain-containing protein;protein_id=WP_011409848.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2830732 2831073 . - . ID=gene-LLC55_RS13400;Name=LLC55_RS13400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13400;old_locus_tag=LLC55_13405 NZ_CP086200.1 Protein Homology CDS 2830732 2831073 . - 0 ID=cds-WP_041182345.1;Parent=gene-LLC55_RS13400;Dbxref=Genbank:WP_041182345.1;Name=WP_041182345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408158.1;locus_tag=LLC55_RS13400;product=hypothetical protein;protein_id=WP_041182345.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2831054 2831524 . - . ID=gene-LLC55_RS13405;Name=LLC55_RS13405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13405;old_locus_tag=LLC55_13410 NZ_CP086200.1 Protein Homology CDS 2831054 2831524 . - 0 ID=cds-WP_229694904.1;Parent=gene-LLC55_RS13405;Dbxref=Genbank:WP_229694904.1;Name=WP_229694904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408159.1;locus_tag=LLC55_RS13405;product=DUF4123 domain-containing protein;protein_id=WP_229694904.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2831560 2831970 . - . ID=gene-LLC55_RS13410;Name=LLC55_RS13410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13410;old_locus_tag=LLC55_13415 NZ_CP086200.1 Protein Homology CDS 2831560 2831970 . - 0 ID=cds-WP_027704109.1;Parent=gene-LLC55_RS13410;Dbxref=Genbank:WP_027704109.1;Name=WP_027704109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409850.1;locus_tag=LLC55_RS13410;product=PAAR domain-containing protein;protein_id=WP_027704109.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2832302 2833009 . - . ID=gene-LLC55_RS13415;Name=LLC55_RS13415;end_range=2833009,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13415;old_locus_tag=LLC55_13420;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2832302 2833009 . - 0 ID=cds-LLC55_RS13415;Parent=gene-LLC55_RS13415;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2833009,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS13415;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2833307 2833528 . - . ID=gene-LLC55_RS13420;Name=LLC55_RS13420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13420;old_locus_tag=LLC55_13425 NZ_CP086200.1 Protein Homology CDS 2833307 2833528 . - 0 ID=cds-WP_069960118.1;Parent=gene-LLC55_RS13420;Dbxref=Genbank:WP_069960118.1;Name=WP_069960118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921785.1;locus_tag=LLC55_RS13420;product=hypothetical protein;protein_id=WP_069960118.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2834208 2834331 . - . ID=gene-LLC55_RS13425;Name=LLC55_RS13425;end_range=2834331,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13425;old_locus_tag=LLC55_13430;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2834208 2834331 . - 0 ID=cds-LLC55_RS13425;Parent=gene-LLC55_RS13425;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2834331,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050089.1;locus_tag=LLC55_RS13425;partial=true;product=CsbD family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2834425 2834610 . - . ID=gene-LLC55_RS13430;Name=LLC55_RS13430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13430;old_locus_tag=LLC55_13435 NZ_CP086200.1 GeneMarkS-2+ CDS 2834425 2834610 . - 0 ID=cds-WP_012446478.1;Parent=gene-LLC55_RS13430;Dbxref=Genbank:WP_012446478.1;Name=WP_012446478.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS13430;product=hypothetical protein;protein_id=WP_012446478.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2834752 2835400 . - . ID=gene-LLC55_RS13435;Name=LLC55_RS13435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13435;old_locus_tag=LLC55_13440;pseudo=true NZ_CP086200.1 Protein Homology CDS 2834752 2835400 . - 0 ID=cds-LLC55_RS13435;Parent=gene-LLC55_RS13435;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364873.1;locus_tag=LLC55_RS13435;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2835643 2836812 . - . ID=gene-LLC55_RS13440;Name=LLC55_RS13440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13440;old_locus_tag=LLC55_13445 NZ_CP086200.1 Protein Homology CDS 2835643 2836812 . - 0 ID=cds-WP_044757270.1;Parent=gene-LLC55_RS13440;Dbxref=Genbank:WP_044757270.1;Name=WP_044757270.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118145.1;locus_tag=LLC55_RS13440;product=glycerate kinase;protein_id=WP_044757270.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2836838 2838148 . - . ID=gene-LLC55_RS13445;Name=LLC55_RS13445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13445;old_locus_tag=LLC55_13450 NZ_CP086200.1 Protein Homology CDS 2836838 2838148 . - 0 ID=cds-WP_069960119.1;Parent=gene-LLC55_RS13445;Dbxref=Genbank:WP_069960119.1;Name=WP_069960119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160000.1;locus_tag=LLC55_RS13445;product=MFS transporter;protein_id=WP_069960119.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2838525 2839788 . - . ID=gene-LLC55_RS13450;Name=LLC55_RS13450;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13450;old_locus_tag=LLC55_13455;pseudo=true NZ_CP086200.1 Protein Homology CDS 2838525 2839788 . - 0 ID=cds-LLC55_RS13450;Parent=gene-LLC55_RS13450;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482262.1;locus_tag=LLC55_RS13450;product=dipeptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2840062 2840382 . - . ID=gene-LLC55_RS13455;Name=LLC55_RS13455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13455;old_locus_tag=LLC55_13460 NZ_CP086200.1 Protein Homology CDS 2840062 2840382 . - 0 ID=cds-WP_069960063.1;Parent=gene-LLC55_RS13455;Dbxref=Genbank:WP_069960063.1;Name=WP_069960063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505368.1;locus_tag=LLC55_RS13455;product=hypothetical protein;protein_id=WP_069960063.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2840501 2841667 . - . ID=gene-LLC55_RS13460;Name=LLC55_RS13460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13460;old_locus_tag=LLC55_13465 NZ_CP086200.1 Protein Homology CDS 2840501 2841667 . - 0 ID=cds-WP_069960064.1;Parent=gene-LLC55_RS13460;Dbxref=Genbank:WP_069960064.1;Name=WP_069960064.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155989.1;locus_tag=LLC55_RS13460;product=class I SAM-dependent rRNA methyltransferase;protein_id=WP_069960064.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2841930 2842886 . + . ID=gene-LLC55_RS13465;Name=LLC55_RS13465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13465;old_locus_tag=LLC55_13470 NZ_CP086200.1 Protein Homology CDS 2841930 2842886 . + 0 ID=cds-WP_011260885.1;Parent=gene-LLC55_RS13465;Dbxref=Genbank:WP_011260885.1;Name=WP_011260885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912402.1;locus_tag=LLC55_RS13465;product=TerC family protein;protein_id=WP_011260885.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2843261 2844046 . + . ID=gene-LLC55_RS13470;Name=LLC55_RS13470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13470;old_locus_tag=LLC55_13475 NZ_CP086200.1 Protein Homology CDS 2843261 2844046 . + 0 ID=cds-WP_011260886.1;Parent=gene-LLC55_RS13470;Dbxref=Genbank:WP_011260886.1;Name=WP_011260886.1;Ontology_term=GO:0004252,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505371.1;locus_tag=LLC55_RS13470;product=rhomboid family intramembrane serine protease;protein_id=WP_011260886.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2844176 2845276 . - . ID=gene-LLC55_RS13475;Name=LLC55_RS13475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13475;old_locus_tag=LLC55_13480 NZ_CP086200.1 Protein Homology CDS 2844176 2845276 . - 0 ID=cds-WP_011409856.1;Parent=gene-LLC55_RS13475;Dbxref=Genbank:WP_011409856.1;Name=WP_011409856.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155987.1;locus_tag=LLC55_RS13475;product=glycerophosphodiester phosphodiesterase;protein_id=WP_011409856.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2845510 2847761 . - . ID=gene-LLC55_RS13480;Name=LLC55_RS13480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13480;old_locus_tag=LLC55_13485;pseudo=true NZ_CP086200.1 Protein Homology CDS 2845510 2847761 . - 0 ID=cds-LLC55_RS13480;Parent=gene-LLC55_RS13480;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482233.1;locus_tag=LLC55_RS13480;product=TonB-dependent receptor;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2848002 2848859 . + . ID=gene-LLC55_RS13485;Name=LLC55_RS13485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13485;old_locus_tag=LLC55_13490 NZ_CP086200.1 Protein Homology CDS 2848002 2848859 . + 0 ID=cds-WP_011409859.1;Parent=gene-LLC55_RS13485;Dbxref=Genbank:WP_011409859.1;Name=WP_011409859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971341.1;locus_tag=LLC55_RS13485;product=phosphatase PAP2 family protein;protein_id=WP_011409859.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2849018 2850358 . - . ID=gene-LLC55_RS13490;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=LLC55_RS13490;old_locus_tag=LLC55_13495 NZ_CP086200.1 Protein Homology CDS 2849018 2850358 . - 0 ID=cds-WP_044757272.1;Parent=gene-LLC55_RS13490;Dbxref=Genbank:WP_044757272.1;Name=WP_044757272.1;Ontology_term=GO:0006400,GO:0003924,GO:0005515,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,protein binding|0005515||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349216.1;locus_tag=LLC55_RS13490;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=WP_044757272.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2850523 2853225 . - . ID=gene-LLC55_RS13495;Name=LLC55_RS13495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13495;old_locus_tag=LLC55_13500 NZ_CP086200.1 Protein Homology CDS 2850523 2853225 . - 0 ID=cds-WP_011409861.1;Parent=gene-LLC55_RS13495;Dbxref=Genbank:WP_011409861.1;Name=WP_011409861.1;Ontology_term=GO:0005975,GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927165.1;locus_tag=LLC55_RS13495;product=polysaccharide deacetylase family protein;protein_id=WP_011409861.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2853304 2855040 . - . ID=gene-LLC55_RS13500;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=LLC55_RS13500;old_locus_tag=LLC55_13505 NZ_CP086200.1 Protein Homology CDS 2853304 2855040 . - 0 ID=cds-WP_011409862.1;Parent=gene-LLC55_RS13500;Dbxref=Genbank:WP_011409862.1;Name=WP_011409862.1;Ontology_term=GO:0032977,GO:0016020;gbkey=CDS;gene=yidC;go_component=membrane|0016020||IEA;go_function=membrane insertase activity|0032977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482225.1;locus_tag=LLC55_RS13500;product=membrane protein insertase YidC;protein_id=WP_011409862.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2855066 2855503 . - . ID=gene-LLC55_RS13505;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=LLC55_RS13505;old_locus_tag=LLC55_13510 NZ_CP086200.1 Protein Homology CDS 2855066 2855503 . - 0 ID=cds-WP_011409863.1;Parent=gene-LLC55_RS13505;Dbxref=Genbank:WP_011409863.1;Name=WP_011409863.1;Ontology_term=GO:0006396,GO:0004526;gbkey=CDS;gene=rnpA;go_function=ribonuclease P activity|0004526||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052928.1;locus_tag=LLC55_RS13505;product=ribonuclease P protein component;protein_id=WP_011409863.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2855542 2855682 . - . ID=gene-LLC55_RS13510;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=LLC55_RS13510;old_locus_tag=LLC55_13515 NZ_CP086200.1 Protein Homology CDS 2855542 2855682 . - 0 ID=cds-WP_002805908.1;Parent=gene-LLC55_RS13510;Dbxref=Genbank:WP_002805908.1;Name=WP_002805908.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006404565.1;locus_tag=LLC55_RS13510;product=50S ribosomal protein L34;protein_id=WP_002805908.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2855925 2856839 . + . ID=gene-LLC55_RS13515;Name=LLC55_RS13515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13515;old_locus_tag=LLC55_13520 NZ_CP086200.1 Protein Homology CDS 2855925 2856839 . + 0 ID=cds-WP_228329599.1;Parent=gene-LLC55_RS13515;Dbxref=Genbank:WP_228329599.1;Name=WP_228329599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571483.1;locus_tag=LLC55_RS13515;product=LytTR family DNA-binding domain-containing protein;protein_id=WP_228329599.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2857093 2858218 . + . ID=gene-LLC55_RS13520;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=LLC55_RS13520;old_locus_tag=LLC55_13525 NZ_CP086200.1 Protein Homology CDS 2857093 2857167 . + 0 ID=cds-WP_014503214.1;Parent=gene-LLC55_RS13520;Dbxref=Genbank:WP_014503214.1;Name=WP_014503214.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0003747;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503214.1;locus_tag=LLC55_RS13520;product=peptide chain release factor 2;protein_id=WP_014503214.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2857169 2858218 . + 0 ID=cds-WP_014503214.1;Parent=gene-LLC55_RS13520;Dbxref=Genbank:WP_014503214.1;Name=WP_014503214.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0003747;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503214.1;locus_tag=LLC55_RS13520;product=peptide chain release factor 2;protein_id=WP_014503214.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2858422 2859939 . + . ID=gene-LLC55_RS13525;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=LLC55_RS13525;old_locus_tag=LLC55_13530 NZ_CP086200.1 Protein Homology CDS 2858422 2859939 . + 0 ID=cds-WP_044756749.1;Parent=gene-LLC55_RS13525;Dbxref=Genbank:WP_044756749.1;Name=WP_044756749.1;Ontology_term=GO:0006430,GO:0004824,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486300.1;locus_tag=LLC55_RS13525;product=lysine--tRNA ligase;protein_id=WP_044756749.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2860081 2861217 . + . ID=gene-LLC55_RS13530;Name=LLC55_RS13530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13530;old_locus_tag=LLC55_13535 NZ_CP086200.1 Protein Homology CDS 2860081 2861217 . + 0 ID=cds-WP_011408849.1;Parent=gene-LLC55_RS13530;Dbxref=Genbank:WP_011408849.1;Name=WP_011408849.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922786.1;locus_tag=LLC55_RS13530;product=two-component system response regulator;protein_id=WP_011408849.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2861582 2863759 . + . ID=gene-LLC55_RS13535;Name=LLC55_RS13535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13535;old_locus_tag=LLC55_13540 NZ_CP086200.1 Protein Homology CDS 2861582 2863759 . + 0 ID=cds-WP_075242179.1;Parent=gene-LLC55_RS13535;Dbxref=Genbank:WP_075242179.1;Name=WP_075242179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174224.1;locus_tag=LLC55_RS13535;product=ATP-binding protein;protein_id=WP_075242179.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2863771 2864640 . - . ID=gene-LLC55_RS13540;Name=LLC55_RS13540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13540;old_locus_tag=LLC55_13545 NZ_CP086200.1 Protein Homology CDS 2863771 2864640 . - 0 ID=cds-WP_011408848.1;Parent=gene-LLC55_RS13540;Dbxref=Genbank:WP_011408848.1;Name=WP_011408848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486308.1;locus_tag=LLC55_RS13540;product=crotonase/enoyl-CoA hydratase family protein;protein_id=WP_011408848.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2864817 2866499 . - . ID=gene-LLC55_RS13545;Name=LLC55_RS13545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13545;old_locus_tag=LLC55_13550 NZ_CP086200.1 Protein Homology CDS 2864817 2866499 . - 0 ID=cds-WP_075242180.1;Parent=gene-LLC55_RS13545;Dbxref=Genbank:WP_075242180.1;Name=WP_075242180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571491.1;locus_tag=LLC55_RS13545;product=long-chain fatty acid--CoA ligase;protein_id=WP_075242180.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2866597 2867026 . + . ID=gene-LLC55_RS13550;Name=LLC55_RS13550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13550;old_locus_tag=LLC55_13555;pseudo=true NZ_CP086200.1 Protein Homology CDS 2866597 2867026 . + 0 ID=cds-LLC55_RS13550;Parent=gene-LLC55_RS13550;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155275.1;locus_tag=LLC55_RS13550;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2867149 2869917 . - . ID=gene-LLC55_RS13555;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=LLC55_RS13555;old_locus_tag=LLC55_13560 NZ_CP086200.1 Protein Homology CDS 2867149 2869917 . - 0 ID=cds-WP_011259446.1;Parent=gene-LLC55_RS13555;Dbxref=Genbank:WP_011259446.1;Name=WP_011259446.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnA;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159833.1;locus_tag=LLC55_RS13555;product=aconitate hydratase AcnA;protein_id=WP_011259446.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2870065 2870313 . + . ID=gene-LLC55_RS13560;Name=LLC55_RS13560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13560;old_locus_tag=LLC55_13565 NZ_CP086200.1 Protein Homology CDS 2870065 2870313 . + 0 ID=cds-WP_003486316.1;Parent=gene-LLC55_RS13560;Dbxref=Genbank:WP_003486316.1;Name=WP_003486316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115874.1;locus_tag=LLC55_RS13560;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_003486316.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2870310 2870720 . + . ID=gene-LLC55_RS13565;Name=LLC55_RS13565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13565;old_locus_tag=LLC55_13570 NZ_CP086200.1 Protein Homology CDS 2870310 2870720 . + 0 ID=cds-WP_011259444.1;Parent=gene-LLC55_RS13565;Dbxref=Genbank:WP_011259444.1;Name=WP_011259444.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259444.1;locus_tag=LLC55_RS13565;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_011259444.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2870786 2873377 . + . ID=gene-LLC55_RS13570;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=LLC55_RS13570;old_locus_tag=LLC55_13575 NZ_CP086200.1 Protein Homology CDS 2870786 2873377 . + 0 ID=cds-WP_011259443.1;Parent=gene-LLC55_RS13570;Dbxref=Genbank:WP_011259443.1;Name=WP_011259443.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnB;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908727.1;locus_tag=LLC55_RS13570;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=WP_011259443.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2873731 2874546 . + . ID=gene-LLC55_RS13575;Name=LLC55_RS13575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13575;old_locus_tag=LLC55_13580 NZ_CP086200.1 Protein Homology CDS 2873731 2874546 . + 0 ID=cds-WP_011259442.1;Parent=gene-LLC55_RS13575;Dbxref=Genbank:WP_011259442.1;Name=WP_011259442.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259442.1;locus_tag=LLC55_RS13575;product=alpha/beta fold hydrolase;protein_id=WP_011259442.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2875034 2875110 . + . ID=gene-LLC55_RS13580;Name=LLC55_RS13580;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS13580;old_locus_tag=LLC55_13585 NZ_CP086200.1 cmsearch ncRNA 2875034 2875110 . + . ID=rna-LLC55_RS13580;Parent=gene-LLC55_RS13580;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13580;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2875034 2875110 . + . ID=exon-LLC55_RS13580-1;Parent=rna-LLC55_RS13580;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13580;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2875202 2877547 . - . ID=gene-LLC55_RS13585;Name=LLC55_RS13585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13585;old_locus_tag=LLC55_13590 NZ_CP086200.1 Protein Homology CDS 2875202 2877547 . - 0 ID=cds-WP_228329600.1;Parent=gene-LLC55_RS13585;Dbxref=Genbank:WP_228329600.1;Name=WP_228329600.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303209.1;locus_tag=LLC55_RS13585;product=EAL domain-containing protein;protein_id=WP_228329600.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2877554 2878630 . - . ID=gene-LLC55_RS13590;Name=LLC55_RS13590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13590;old_locus_tag=LLC55_13595 NZ_CP086200.1 Protein Homology CDS 2877554 2878630 . - 0 ID=cds-WP_011259440.1;Parent=gene-LLC55_RS13590;Dbxref=Genbank:WP_011259440.1;Name=WP_011259440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914919.1;locus_tag=LLC55_RS13590;product=chemotaxis response regulator protein-glutamate methylesterase;protein_id=WP_011259440.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2878627 2879223 . - . ID=gene-LLC55_RS13595;Name=cheD;gbkey=Gene;gene=cheD;gene_biotype=protein_coding;locus_tag=LLC55_RS13595;old_locus_tag=LLC55_13600 NZ_CP086200.1 Protein Homology CDS 2878627 2879223 . - 0 ID=cds-WP_011259439.1;Parent=gene-LLC55_RS13595;Dbxref=Genbank:WP_011259439.1;Name=WP_011259439.1;Ontology_term=GO:0006935,GO:0050568;gbkey=CDS;gene=cheD;go_function=protein-glutamine glutaminase activity|0050568||IEA;go_process=chemotaxis|0006935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486330.1;locus_tag=LLC55_RS13595;product=chemoreceptor glutamine deamidase CheD;protein_id=WP_011259439.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2879220 2880086 . - . ID=gene-LLC55_RS13600;Name=LLC55_RS13600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13600;old_locus_tag=LLC55_13605 NZ_CP086200.1 Protein Homology CDS 2879220 2880086 . - 0 ID=cds-WP_011408845.1;Parent=gene-LLC55_RS13600;Dbxref=Genbank:WP_011408845.1;Name=WP_011408845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302811.1;locus_tag=LLC55_RS13600;product=chemotaxis protein CheR;protein_id=WP_011408845.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2880344 2882737 . - . ID=gene-LLC55_RS13605;Name=LLC55_RS13605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13605;old_locus_tag=LLC55_13610 NZ_CP086200.1 Protein Homology CDS 2880344 2882737 . - 0 ID=cds-WP_012444601.1;Parent=gene-LLC55_RS13605;Dbxref=Genbank:WP_012444601.1;Name=WP_012444601.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486335.1;locus_tag=LLC55_RS13605;product=methyl-accepting chemotaxis protein;protein_id=WP_012444601.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2882822 2883207 . - . ID=gene-LLC55_RS13610;Name=LLC55_RS13610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13610;old_locus_tag=LLC55_13615;pseudo=true NZ_CP086200.1 Protein Homology CDS 2882822 2883207 . - 0 ID=cds-LLC55_RS13610;Parent=gene-LLC55_RS13610;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486337.1;locus_tag=LLC55_RS13610;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2883388 2884186 . - . ID=gene-LLC55_RS13615;Name=LLC55_RS13615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13615;old_locus_tag=LLC55_13620 NZ_CP086200.1 Protein Homology CDS 2883915 2884186 . - 0 ID=cds-WP_094187763.1-3;Parent=gene-LLC55_RS13615;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS13615;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2883388 2883916 . - 1 ID=cds-WP_094187763.1-3;Parent=gene-LLC55_RS13615;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS13615;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2884230 2884805 . + . ID=gene-LLC55_RS13620;Name=LLC55_RS13620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13620;old_locus_tag=LLC55_13625;partial=true;pseudo=true;start_range=.,2884230 NZ_CP086200.1 Protein Homology CDS 2884230 2884805 . + 0 ID=cds-LLC55_RS13620;Parent=gene-LLC55_RS13620;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS13620;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,2884230;transl_table=11 NZ_CP086200.1 RefSeq gene 2885035 2885517 . - . ID=gene-LLC55_RS13625;Name=LLC55_RS13625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13625;old_locus_tag=LLC55_13630 NZ_CP086200.1 Protein Homology CDS 2885035 2885517 . - 0 ID=cds-WP_011408841.1;Parent=gene-LLC55_RS13625;Dbxref=Genbank:WP_011408841.1;Name=WP_011408841.1;Ontology_term=GO:0006935,GO:0007165;gbkey=CDS;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486339.1;locus_tag=LLC55_RS13625;product=chemotaxis protein CheW;protein_id=WP_011408841.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2885653 2886438 . - . ID=gene-LLC55_RS13630;Name=LLC55_RS13630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13630;old_locus_tag=LLC55_13635 NZ_CP086200.1 Protein Homology CDS 2885653 2886438 . - 0 ID=cds-WP_011408840.1;Parent=gene-LLC55_RS13630;Dbxref=Genbank:WP_011408840.1;Name=WP_011408840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159446.1;locus_tag=LLC55_RS13630;product=flagellar brake protein;protein_id=WP_011408840.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2886721 2886797 . - . ID=gene-LLC55_RS13635;Name=LLC55_RS13635;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS13635;old_locus_tag=LLC55_13640 NZ_CP086200.1 cmsearch ncRNA 2886721 2886797 . - . ID=rna-LLC55_RS13635;Parent=gene-LLC55_RS13635;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13635;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2886721 2886797 . - . ID=exon-LLC55_RS13635-1;Parent=rna-LLC55_RS13635;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13635;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2887408 2889669 . - . ID=gene-LLC55_RS13640;Name=LLC55_RS13640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13640;old_locus_tag=LLC55_13645 NZ_CP086200.1 Protein Homology CDS 2887408 2889669 . - 0 ID=cds-WP_011408839.1;Parent=gene-LLC55_RS13640;Dbxref=Genbank:WP_011408839.1;Name=WP_011408839.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155262.1;locus_tag=LLC55_RS13640;product=methyl-accepting chemotaxis protein;protein_id=WP_011408839.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2890063 2892324 . - . ID=gene-LLC55_RS13645;Name=LLC55_RS13645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13645;old_locus_tag=LLC55_13650 NZ_CP086200.1 Protein Homology CDS 2890063 2892324 . - 0 ID=cds-WP_011259431.1;Parent=gene-LLC55_RS13645;Dbxref=Genbank:WP_011259431.1;Name=WP_011259431.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155261.1;locus_tag=LLC55_RS13645;product=methyl-accepting chemotaxis protein;protein_id=WP_011259431.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2892917 2894992 . - . ID=gene-LLC55_RS13650;Name=LLC55_RS13650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13650;old_locus_tag=LLC55_13655 NZ_CP086200.1 Protein Homology CDS 2892917 2894992 . - 0 ID=cds-WP_113085530.1;Parent=gene-LLC55_RS13650;Dbxref=Genbank:WP_113085530.1;Name=WP_113085530.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444606.1;locus_tag=LLC55_RS13650;product=methyl-accepting chemotaxis protein;protein_id=WP_113085530.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2895676 2897787 . - . ID=gene-LLC55_RS13655;Name=LLC55_RS13655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13655;old_locus_tag=LLC55_13660 NZ_CP086200.1 Protein Homology CDS 2895676 2897787 . - 0 ID=cds-WP_075242161.1;Parent=gene-LLC55_RS13655;Dbxref=Genbank:WP_075242161.1;Name=WP_075242161.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155257.1;locus_tag=LLC55_RS13655;product=methyl-accepting chemotaxis protein;protein_id=WP_075242161.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2898223 2898299 . - . ID=gene-LLC55_RS13660;Name=LLC55_RS13660;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS13660;old_locus_tag=LLC55_13665 NZ_CP086200.1 cmsearch ncRNA 2898223 2898299 . - . ID=rna-LLC55_RS13660;Parent=gene-LLC55_RS13660;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13660;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 2898223 2898299 . - . ID=exon-LLC55_RS13660-1;Parent=rna-LLC55_RS13660;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS13660;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 2898518 2900776 . - . ID=gene-LLC55_RS13665;Name=LLC55_RS13665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13665;old_locus_tag=LLC55_13670 NZ_CP086200.1 Protein Homology CDS 2898518 2900776 . - 0 ID=cds-WP_075242160.1;Parent=gene-LLC55_RS13665;Dbxref=Genbank:WP_075242160.1;Name=WP_075242160.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113509.1;locus_tag=LLC55_RS13665;product=methyl-accepting chemotaxis protein;protein_id=WP_075242160.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2901017 2901982 . - . ID=gene-LLC55_RS13670;Name=LLC55_RS13670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13670;old_locus_tag=LLC55_13675 NZ_CP086200.1 Protein Homology CDS 2901017 2901982 . - 0 ID=cds-WP_109182116.1;Parent=gene-LLC55_RS13670;Dbxref=Genbank:WP_109182116.1;Name=WP_109182116.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS13670;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182116.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2902479 2904821 . - . ID=gene-LLC55_RS13675;Name=LLC55_RS13675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13675;old_locus_tag=LLC55_13680 NZ_CP086200.1 Protein Homology CDS 2902479 2904821 . - 0 ID=cds-WP_011408834.1;Parent=gene-LLC55_RS13675;Dbxref=Genbank:WP_011408834.1;Name=WP_011408834.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994843.1;locus_tag=LLC55_RS13675;product=methyl-accepting chemotaxis protein;protein_id=WP_011408834.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2904835 2905596 . - . ID=gene-LLC55_RS13680;Name=LLC55_RS13680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13680;old_locus_tag=LLC55_13685 NZ_CP086200.1 Protein Homology CDS 2904835 2905596 . - 0 ID=cds-WP_011408833.1;Parent=gene-LLC55_RS13680;Dbxref=Genbank:WP_011408833.1;Name=WP_011408833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914931.1;locus_tag=LLC55_RS13680;product=transporter;protein_id=WP_011408833.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2905912 2907103 . - . ID=gene-LLC55_RS13685;Name=LLC55_RS13685;end_range=2907103,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13685;old_locus_tag=LLC55_13690;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2905912 2907103 . - 0 ID=cds-LLC55_RS13685;Parent=gene-LLC55_RS13685;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0007165,GO:0016020;end_range=2907103,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090085.1;locus_tag=LLC55_RS13685;partial=true;product=methyl-accepting chemotaxis protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2907110 2908003 . - . ID=gene-LLC55_RS13690;Name=LLC55_RS13690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13690;old_locus_tag=LLC55_13695 NZ_CP086200.1 Protein Homology CDS 2907110 2908003 . - 0 ID=cds-WP_229001907.1;Parent=gene-LLC55_RS13690;Dbxref=Genbank:WP_229001907.1;Name=WP_229001907.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182719.1;locus_tag=LLC55_RS13690;product=IS30 family transposase;protein_id=WP_229001907.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2908331 2908570 . - . ID=gene-LLC55_RS13695;Name=LLC55_RS13695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13695;old_locus_tag=LLC55_13700;partial=true;pseudo=true;start_range=.,2908331 NZ_CP086200.1 Protein Homology CDS 2908331 2908570 . - 0 ID=cds-LLC55_RS13695;Parent=gene-LLC55_RS13695;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612229.1;locus_tag=LLC55_RS13695;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,2908331;transl_table=11 NZ_CP086200.1 RefSeq gene 2908730 2910739 . - . ID=gene-LLC55_RS13700;Name=LLC55_RS13700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13700;old_locus_tag=LLC55_13705 NZ_CP086200.1 Protein Homology CDS 2908730 2910739 . - 0 ID=cds-WP_011408829.1;Parent=gene-LLC55_RS13700;Dbxref=Genbank:WP_011408829.1;Name=WP_011408829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577777.1;locus_tag=LLC55_RS13700;product=chemotaxis protein CheA;protein_id=WP_011408829.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2910773 2911138 . - . ID=gene-LLC55_RS13705;Name=LLC55_RS13705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13705;old_locus_tag=LLC55_13710 NZ_CP086200.1 Protein Homology CDS 2910773 2911138 . - 0 ID=cds-WP_002806565.1;Parent=gene-LLC55_RS13705;Dbxref=Genbank:WP_002806565.1;Name=WP_002806565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806565.1;locus_tag=LLC55_RS13705;product=response regulator;protein_id=WP_002806565.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2911135 2911443 . - . ID=gene-LLC55_RS13710;Name=LLC55_RS13710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13710;old_locus_tag=LLC55_13715 NZ_CP086200.1 Protein Homology CDS 2911135 2911443 . - 0 ID=cds-WP_011259421.1;Parent=gene-LLC55_RS13710;Dbxref=Genbank:WP_011259421.1;Name=WP_011259421.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302363.1;locus_tag=LLC55_RS13710;product=STAS domain-containing protein;protein_id=WP_011259421.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2911544 2912566 . - . ID=gene-LLC55_RS13715;Name=LLC55_RS13715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13715;old_locus_tag=LLC55_13720 NZ_CP086200.1 Protein Homology CDS 2911544 2912566 . - 0 ID=cds-WP_042465006.1;Parent=gene-LLC55_RS13715;Dbxref=Genbank:WP_042465006.1;Name=WP_042465006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118095.1;locus_tag=LLC55_RS13715;product=chemotaxis protein CheW;protein_id=WP_042465006.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2912563 2913345 . - . ID=gene-LLC55_RS13720;Name=LLC55_RS13720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13720;old_locus_tag=LLC55_13725 NZ_CP086200.1 Protein Homology CDS 2912563 2913345 . - 0 ID=cds-WP_011259419.1;Parent=gene-LLC55_RS13720;Dbxref=Genbank:WP_011259419.1;Name=WP_011259419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503257.1;locus_tag=LLC55_RS13720;product=ParA family protein;protein_id=WP_011259419.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2913347 2914321 . - . ID=gene-LLC55_RS13725;Name=motD;gbkey=Gene;gene=motD;gene_biotype=protein_coding;locus_tag=LLC55_RS13725;old_locus_tag=LLC55_13730 NZ_CP086200.1 Protein Homology CDS 2913347 2914321 . - 0 ID=cds-WP_011408827.1;Parent=gene-LLC55_RS13725;Dbxref=Genbank:WP_011408827.1;Name=WP_011408827.1;gbkey=CDS;gene=motD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931860.1;locus_tag=LLC55_RS13725;product=flagellar motor protein MotD;protein_id=WP_011408827.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2914328 2915068 . - . ID=gene-LLC55_RS13730;Name=LLC55_RS13730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13730;old_locus_tag=LLC55_13735 NZ_CP086200.1 Protein Homology CDS 2914328 2915068 . - 0 ID=cds-WP_011259417.1;Parent=gene-LLC55_RS13730;Dbxref=Genbank:WP_011259417.1;Name=WP_011259417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806574.1;locus_tag=LLC55_RS13730;product=flagellar motor protein;protein_id=WP_011259417.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2915157 2915510 . - . ID=gene-LLC55_RS13735;Name=LLC55_RS13735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13735;old_locus_tag=LLC55_13740 NZ_CP086200.1 GeneMarkS-2+ CDS 2915157 2915510 . - 0 ID=cds-WP_027703781.1;Parent=gene-LLC55_RS13735;Dbxref=Genbank:WP_027703781.1;Name=WP_027703781.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS13735;product=hypothetical protein;protein_id=WP_027703781.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2915507 2915998 . - . ID=gene-LLC55_RS13740;Name=LLC55_RS13740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13740;old_locus_tag=LLC55_13745 NZ_CP086200.1 Protein Homology CDS 2915507 2915998 . - 0 ID=cds-WP_011408826.1;Parent=gene-LLC55_RS13740;Dbxref=Genbank:WP_011408826.1;Name=WP_011408826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408826.1;locus_tag=LLC55_RS13740;product=TonB-dependent receptor;protein_id=WP_011408826.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2916045 2916437 . - . ID=gene-LLC55_RS13745;Name=LLC55_RS13745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13745;old_locus_tag=LLC55_13750 NZ_CP086200.1 Protein Homology CDS 2916045 2916437 . - 0 ID=cds-WP_011408825.1;Parent=gene-LLC55_RS13745;Dbxref=Genbank:WP_011408825.1;Name=WP_011408825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408825.1;locus_tag=LLC55_RS13745;product=TonB-dependent receptor plug domain-containing protein;protein_id=WP_011408825.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2916589 2917296 . - . ID=gene-LLC55_RS13750;Name=LLC55_RS13750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13750;old_locus_tag=LLC55_13755 NZ_CP086200.1 Protein Homology CDS 2916589 2917296 . - 0 ID=cds-WP_044756757.1;Parent=gene-LLC55_RS13750;Dbxref=Genbank:WP_044756757.1;Name=WP_044756757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444621.1;locus_tag=LLC55_RS13750;product=superoxide dismutase;protein_id=WP_044756757.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2917372 2917719 . - . ID=gene-LLC55_RS13755;Name=LLC55_RS13755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13755;old_locus_tag=LLC55_13760 NZ_CP086200.1 GeneMarkS-2+ CDS 2917372 2917719 . - 0 ID=cds-WP_125168759.1;Parent=gene-LLC55_RS13755;Dbxref=Genbank:WP_125168759.1;Name=WP_125168759.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS13755;product=hypothetical protein;protein_id=WP_125168759.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2917721 2919481 . - . ID=gene-LLC55_RS13760;Name=LLC55_RS13760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13760;old_locus_tag=LLC55_13765 NZ_CP086200.1 Protein Homology CDS 2917721 2919481 . - 0 ID=cds-WP_228329602.1;Parent=gene-LLC55_RS13760;Dbxref=Genbank:WP_228329602.1;Name=WP_228329602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408823.1;locus_tag=LLC55_RS13760;product=TonB-dependent receptor;protein_id=WP_228329602.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2919781 2920245 . - . ID=gene-LLC55_RS13765;Name=LLC55_RS13765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13765;old_locus_tag=LLC55_13770 NZ_CP086200.1 Protein Homology CDS 2919781 2920245 . - 0 ID=cds-WP_047339807.1;Parent=gene-LLC55_RS13765;Dbxref=Genbank:WP_047339807.1;Name=WP_047339807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302875.1;locus_tag=LLC55_RS13765;product=hypothetical protein;protein_id=WP_047339807.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2921226 2924336 . + . ID=gene-LLC55_RS13770;Name=LLC55_RS13770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13770;old_locus_tag=LLC55_13775 NZ_CP086200.1 Protein Homology CDS 2921226 2924336 . + 0 ID=cds-WP_011408820.1;Parent=gene-LLC55_RS13770;Dbxref=Genbank:WP_011408820.1;Name=WP_011408820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576378.1;locus_tag=LLC55_RS13770;product=TonB-dependent receptor;protein_id=WP_011408820.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2924645 2925145 . + . ID=gene-LLC55_RS13775;Name=LLC55_RS13775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13775;old_locus_tag=LLC55_13780 NZ_CP086200.1 GeneMarkS-2+ CDS 2924645 2925145 . + 0 ID=cds-WP_125168758.1;Parent=gene-LLC55_RS13775;Dbxref=Genbank:WP_125168758.1;Name=WP_125168758.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS13775;product=hypothetical protein;protein_id=WP_125168758.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2925142 2925750 . + . ID=gene-LLC55_RS13780;Name=LLC55_RS13780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13780;old_locus_tag=LLC55_13785 NZ_CP086200.1 GeneMarkS-2+ CDS 2925142 2925750 . + 0 ID=cds-WP_011408818.1;Parent=gene-LLC55_RS13780;Dbxref=Genbank:WP_011408818.1;Name=WP_011408818.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS13780;product=hypothetical protein;protein_id=WP_011408818.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2925802 2926770 . + . ID=gene-LLC55_RS13785;Name=LLC55_RS13785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13785;old_locus_tag=LLC55_13790 NZ_CP086200.1 Protein Homology CDS 2925802 2926770 . + 0 ID=cds-WP_011258802.1-10;Parent=gene-LLC55_RS13785;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS13785;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2926941 2927171 . + . ID=gene-LLC55_RS13790;Name=LLC55_RS13790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13790;old_locus_tag=LLC55_13795 NZ_CP086200.1 Protein Homology CDS 2926941 2927171 . + 0 ID=cds-WP_229001908.1;Parent=gene-LLC55_RS13790;Dbxref=Genbank:WP_229001908.1;Name=WP_229001908.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027488.2;locus_tag=LLC55_RS13790;product=hypothetical protein;protein_id=WP_229001908.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2927270 2927905 . - . ID=gene-LLC55_RS13795;Name=LLC55_RS13795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13795;old_locus_tag=LLC55_13800 NZ_CP086200.1 Protein Homology CDS 2927270 2927905 . - 0 ID=cds-WP_075242278.1;Parent=gene-LLC55_RS13795;Dbxref=Genbank:WP_075242278.1;Name=WP_075242278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380996.1;locus_tag=LLC55_RS13795;product=hypothetical protein;protein_id=WP_075242278.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2928325 2928594 . + . ID=gene-LLC55_RS13800;Name=LLC55_RS13800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13800;old_locus_tag=LLC55_13805 NZ_CP086200.1 Protein Homology CDS 2928325 2928594 . + 0 ID=cds-WP_228329604.1;Parent=gene-LLC55_RS13800;Dbxref=Genbank:WP_228329604.1;Name=WP_228329604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463134.1;locus_tag=LLC55_RS13800;product=hypothetical protein;protein_id=WP_228329604.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2928591 2929007 . + . ID=gene-LLC55_RS13805;Name=LLC55_RS13805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13805;old_locus_tag=LLC55_13810 NZ_CP086200.1 Protein Homology CDS 2928591 2929007 . + 0 ID=cds-WP_011259409.1;Parent=gene-LLC55_RS13805;Dbxref=Genbank:WP_011259409.1;Name=WP_011259409.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507646.1;locus_tag=LLC55_RS13805;product=SymE family type I addiction module toxin;protein_id=WP_011259409.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2929009 2929899 . - . ID=gene-LLC55_RS13810;Name=LLC55_RS13810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13810;old_locus_tag=LLC55_13815;partial=true;pseudo=true;start_range=.,2929009 NZ_CP086200.1 Protein Homology CDS 2929009 2929899 . - 0 ID=cds-LLC55_RS13810;Parent=gene-LLC55_RS13810;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444485.1;locus_tag=LLC55_RS13810;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2929009;transl_table=11 NZ_CP086200.1 RefSeq gene 2930112 2931431 . - . ID=gene-LLC55_RS13815;Name=LLC55_RS13815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13815;old_locus_tag=LLC55_13820 NZ_CP086200.1 Protein Homology CDS 2930112 2931431 . - 0 ID=cds-WP_228329605.1;Parent=gene-LLC55_RS13815;Dbxref=Genbank:WP_228329605.1;Name=WP_228329605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS13815;product=IS701-like element ISXo15 family transposase;protein_id=WP_228329605.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2931659 2931973 . - . ID=gene-LLC55_RS13820;Name=LLC55_RS13820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13820;old_locus_tag=LLC55_13825 NZ_CP086200.1 Protein Homology CDS 2931659 2931973 . - 0 ID=cds-WP_011408814.1;Parent=gene-LLC55_RS13820;Dbxref=Genbank:WP_011408814.1;Name=WP_011408814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014403016.1;locus_tag=LLC55_RS13820;product=DUF1153 domain-containing protein;protein_id=WP_011408814.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2932029 2932859 . - . ID=gene-LLC55_RS13825;Name=LLC55_RS13825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13825;old_locus_tag=LLC55_13830;partial=true;pseudo=true;start_range=.,2932029 NZ_CP086200.1 Protein Homology CDS 2932029 2932859 . - 0 ID=cds-LLC55_RS13825;Parent=gene-LLC55_RS13825;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012701750.1;locus_tag=LLC55_RS13825;partial=true;product=IS701 family transposase;pseudo=true;start_range=.,2932029;transl_table=11 NZ_CP086200.1 RefSeq gene 2933125 2933409 . + . ID=gene-LLC55_RS13830;Name=LLC55_RS13830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13830;old_locus_tag=LLC55_13835 NZ_CP086200.1 Protein Homology CDS 2933125 2933409 . + 0 ID=cds-WP_012444628.1;Parent=gene-LLC55_RS13830;Dbxref=Genbank:WP_012444628.1;Name=WP_012444628.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504983.1;locus_tag=LLC55_RS13830;product=contractile injection system protein%2C VgrG/Pvc8 family;protein_id=WP_012444628.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2933449 2935821 . + . ID=gene-LLC55_RS13835;Name=LLC55_RS13835;end_range=2935821,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13835;old_locus_tag=LLC55_13840;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2933449 2935821 . + 0 ID=cds-LLC55_RS13835;Parent=gene-LLC55_RS13835;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2935821,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS13835;partial=true;product=avirulence protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2935913 2936032 . - . ID=gene-LLC55_RS13840;Name=LLC55_RS13840;end_range=2936032,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13840;old_locus_tag=LLC55_13845;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2935913 2936032 . - 0 ID=cds-LLC55_RS13840;Parent=gene-LLC55_RS13840;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2936032,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612184.1;locus_tag=LLC55_RS13840;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2936055 2937148 . - . ID=gene-LLC55_RS13845;Name=LLC55_RS13845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13845;old_locus_tag=LLC55_13850 NZ_CP086200.1 Protein Homology CDS 2936962 2937148 . - 0 ID=cds-WP_228329606.1;Parent=gene-LLC55_RS13845;Dbxref=Genbank:WP_228329606.1;Name=WP_228329606.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=LLC55_RS13845;product=IS3 family transposase;protein_id=WP_228329606.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2936055 2936962 . - 2 ID=cds-WP_228329606.1;Parent=gene-LLC55_RS13845;Dbxref=Genbank:WP_228329606.1;Name=WP_228329606.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=LLC55_RS13845;product=IS3 family transposase;protein_id=WP_228329606.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2937468 2937752 . + . ID=gene-LLC55_RS13850;Name=LLC55_RS13850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13850;old_locus_tag=LLC55_13855 NZ_CP086200.1 Protein Homology CDS 2937468 2937752 . + 0 ID=cds-WP_012444628.1-2;Parent=gene-LLC55_RS13850;Dbxref=Genbank:WP_012444628.1;Name=WP_012444628.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504983.1;locus_tag=LLC55_RS13850;product=contractile injection system protein%2C VgrG/Pvc8 family;protein_id=WP_012444628.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2937792 2941091 . + . ID=gene-LLC55_RS13855;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=pseudogene;locus_tag=LLC55_RS13855;old_locus_tag=LLC55_13860;pseudo=true NZ_CP086200.1 Protein Homology CDS 2937792 2941091 . + 0 ID=cds-LLC55_RS13855;Parent=gene-LLC55_RS13855;Note=internal stop;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505114.1;locus_tag=LLC55_RS13855;product=type III secretion system effector avirulence protein AvrBs3;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2941148 2941267 . - . ID=gene-LLC55_RS13860;Name=LLC55_RS13860;end_range=2941267,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13860;old_locus_tag=LLC55_13865;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2941148 2941267 . - 0 ID=cds-LLC55_RS13860;Parent=gene-LLC55_RS13860;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2941267,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612184.1;locus_tag=LLC55_RS13860;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2941290 2942383 . - . ID=gene-LLC55_RS13865;Name=LLC55_RS13865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13865;old_locus_tag=LLC55_13870 NZ_CP086200.1 Protein Homology CDS 2942197 2942383 . - 0 ID=cds-WP_228329606.1-2;Parent=gene-LLC55_RS13865;Dbxref=Genbank:WP_228329606.1;Name=WP_228329606.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=LLC55_RS13865;product=IS3 family transposase;protein_id=WP_228329606.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 2941290 2942197 . - 2 ID=cds-WP_228329606.1-2;Parent=gene-LLC55_RS13865;Dbxref=Genbank:WP_228329606.1;Name=WP_228329606.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=LLC55_RS13865;product=IS3 family transposase;protein_id=WP_228329606.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2942637 2945399 . + . ID=gene-LLC55_RS13870;Name=LLC55_RS13870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13870;old_locus_tag=LLC55_13875 NZ_CP086200.1 Protein Homology CDS 2942637 2945399 . + 0 ID=cds-WP_069964551.1;Parent=gene-LLC55_RS13870;Dbxref=Genbank:WP_069964551.1;Name=WP_069964551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444636.1;locus_tag=LLC55_RS13870;product=type VI secretion system Vgr family protein;protein_id=WP_069964551.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2945408 2946337 . + . ID=gene-LLC55_RS13875;Name=LLC55_RS13875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13875;old_locus_tag=LLC55_13880 NZ_CP086200.1 Protein Homology CDS 2945408 2946337 . + 0 ID=cds-WP_069964550.1;Parent=gene-LLC55_RS13875;Dbxref=Genbank:WP_069964550.1;Name=WP_069964550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444637.1;locus_tag=LLC55_RS13875;product=DUF4123 domain-containing protein;protein_id=WP_069964550.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2946585 2946713 . - . ID=gene-LLC55_RS23480;Name=LLC55_RS23480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23480 NZ_CP086200.1 GeneMarkS-2+ CDS 2946585 2946713 . - 0 ID=cds-WP_257784780.1;Parent=gene-LLC55_RS23480;Dbxref=Genbank:WP_257784780.1;Name=WP_257784780.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23480;product=hypothetical protein;protein_id=WP_257784780.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2946826 2949168 . + . ID=gene-LLC55_RS13880;Name=LLC55_RS13880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13880;old_locus_tag=LLC55_13885 NZ_CP086200.1 Protein Homology CDS 2946826 2949168 . + 0 ID=cds-WP_228329754.1;Parent=gene-LLC55_RS13880;Dbxref=Genbank:WP_228329754.1;Name=WP_228329754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408806.1;locus_tag=LLC55_RS13880;product=hypothetical protein;protein_id=WP_228329754.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2949199 2949942 . + . ID=gene-LLC55_RS13885;Name=LLC55_RS13885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13885;old_locus_tag=LLC55_13890 NZ_CP086200.1 Protein Homology CDS 2949199 2949942 . + 0 ID=cds-WP_042465604.1;Parent=gene-LLC55_RS13885;Dbxref=Genbank:WP_042465604.1;Name=WP_042465604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408807.1;locus_tag=LLC55_RS13885;product=hypothetical protein;protein_id=WP_042465604.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2949967 2952309 . + . ID=gene-LLC55_RS13890;Name=LLC55_RS13890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13890;old_locus_tag=LLC55_13895 NZ_CP086200.1 Protein Homology CDS 2949967 2952309 . + 0 ID=cds-WP_069959894.1;Parent=gene-LLC55_RS13890;Dbxref=Genbank:WP_069959894.1;Name=WP_069959894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408804.1;locus_tag=LLC55_RS13890;product=hypothetical protein;protein_id=WP_069959894.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2952338 2953066 . + . ID=gene-LLC55_RS13895;Name=LLC55_RS13895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13895;old_locus_tag=LLC55_13900 NZ_CP086200.1 Protein Homology CDS 2952338 2953066 . + 0 ID=cds-WP_014503414.1;Parent=gene-LLC55_RS13895;Dbxref=Genbank:WP_014503414.1;Name=WP_014503414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259611.1;locus_tag=LLC55_RS13895;product=hypothetical protein;protein_id=WP_014503414.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2953091 2955433 . + . ID=gene-LLC55_RS13900;Name=LLC55_RS13900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13900;old_locus_tag=LLC55_13905 NZ_CP086200.1 Protein Homology CDS 2953091 2955433 . + 0 ID=cds-WP_069959893.1;Parent=gene-LLC55_RS13900;Dbxref=Genbank:WP_069959893.1;Name=WP_069959893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408803.1;locus_tag=LLC55_RS13900;product=hypothetical protein;protein_id=WP_069959893.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2955465 2956196 . + . ID=gene-LLC55_RS13905;Name=LLC55_RS13905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13905;old_locus_tag=LLC55_13910 NZ_CP086200.1 Protein Homology CDS 2955465 2956196 . + 0 ID=cds-WP_041182891.1;Parent=gene-LLC55_RS13905;Dbxref=Genbank:WP_041182891.1;Name=WP_041182891.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408807.1;locus_tag=LLC55_RS13905;product=hypothetical protein;protein_id=WP_041182891.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2956214 2958559 . + . ID=gene-LLC55_RS13910;Name=LLC55_RS13910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13910;old_locus_tag=LLC55_13915 NZ_CP086200.1 Protein Homology CDS 2956214 2958559 . + 0 ID=cds-WP_069959892.1;Parent=gene-LLC55_RS13910;Dbxref=Genbank:WP_069959892.1;Name=WP_069959892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408802.1;locus_tag=LLC55_RS13910;product=hypothetical protein;protein_id=WP_069959892.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2958584 2958739 . + . ID=gene-LLC55_RS13915;Name=LLC55_RS13915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13915;old_locus_tag=LLC55_13920 NZ_CP086200.1 GeneMarkS-2+ CDS 2958584 2958739 . + 0 ID=cds-WP_155296181.1;Parent=gene-LLC55_RS13915;Dbxref=Genbank:WP_155296181.1;Name=WP_155296181.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS13915;product=hypothetical protein;protein_id=WP_155296181.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2958854 2959822 . - . ID=gene-LLC55_RS13920;Name=LLC55_RS13920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13920;old_locus_tag=LLC55_13925 NZ_CP086200.1 Protein Homology CDS 2958854 2959822 . - 0 ID=cds-WP_011258802.1-11;Parent=gene-LLC55_RS13920;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS13920;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2959896 2960159 . + . ID=gene-LLC55_RS13925;Name=LLC55_RS13925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13925;old_locus_tag=LLC55_13930 NZ_CP086200.1 GeneMarkS-2+ CDS 2959896 2960159 . + 0 ID=cds-WP_228329607.1;Parent=gene-LLC55_RS13925;Dbxref=Genbank:WP_228329607.1;Name=WP_228329607.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS13925;product=hypothetical protein;protein_id=WP_228329607.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2960489 2961766 . - . ID=gene-LLC55_RS13930;Name=LLC55_RS13930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13930;old_locus_tag=LLC55_13935 NZ_CP086200.1 Protein Homology CDS 2960489 2961766 . - 0 ID=cds-WP_012444645.1;Parent=gene-LLC55_RS13930;Dbxref=Genbank:WP_012444645.1;Name=WP_012444645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237567.1;locus_tag=LLC55_RS13930;product=carbohydrate porin;protein_id=WP_012444645.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2961944 2963686 . - . ID=gene-LLC55_RS13935;Name=LLC55_RS13935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13935;old_locus_tag=LLC55_13940 NZ_CP086200.1 Protein Homology CDS 2961944 2963686 . - 0 ID=cds-WP_069963855.1;Parent=gene-LLC55_RS13935;Dbxref=Genbank:WP_069963855.1;Name=WP_069963855.1;Ontology_term=GO:0009401,GO:0022877,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993427.1;locus_tag=LLC55_RS13935;product=fructose-specific PTS transporter subunit EIIC;protein_id=WP_069963855.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2963845 2964801 . - . ID=gene-LLC55_RS13940;Name=LLC55_RS13940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13940;old_locus_tag=LLC55_13945 NZ_CP086200.1 Protein Homology CDS 2963845 2964801 . - 0 ID=cds-WP_011259401.1;Parent=gene-LLC55_RS13940;Dbxref=Genbank:WP_011259401.1;Name=WP_011259401.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969646.1;locus_tag=LLC55_RS13940;product=1-phosphofructokinase family hexose kinase;protein_id=WP_011259401.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2964798 2967314 . - . ID=gene-LLC55_RS13945;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=LLC55_RS13945;old_locus_tag=LLC55_13950 NZ_CP086200.1 Protein Homology CDS 2964798 2967314 . - 0 ID=cds-WP_059317461.1;Parent=gene-LLC55_RS13945;Dbxref=Genbank:WP_059317461.1;Name=WP_059317461.1;Ontology_term=GO:0006808,GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=regulation of nitrogen utilization|0006808||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051629.1;locus_tag=LLC55_RS13945;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_059317461.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2967475 2968470 . + . ID=gene-LLC55_RS13950;Name=LLC55_RS13950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13950;old_locus_tag=LLC55_13955 NZ_CP086200.1 Protein Homology CDS 2967475 2968470 . + 0 ID=cds-WP_011408798.1;Parent=gene-LLC55_RS13950;Dbxref=Genbank:WP_011408798.1;Name=WP_011408798.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161385.1;locus_tag=LLC55_RS13950;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_011408798.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2968612 2969079 . - . ID=gene-LLC55_RS13955;Name=LLC55_RS13955;end_range=2969079,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13955;old_locus_tag=LLC55_13960;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 2968612 2969079 . - 0 ID=cds-LLC55_RS13955;Parent=gene-LLC55_RS13955;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=2969079,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611069.1;locus_tag=LLC55_RS13955;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 2969177 2970142 . + . ID=gene-LLC55_RS13960;Name=LLC55_RS13960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13960;old_locus_tag=LLC55_13965 NZ_CP086200.1 Protein Homology CDS 2969177 2970142 . + 0 ID=cds-WP_228329608.1;Parent=gene-LLC55_RS13960;Dbxref=Genbank:WP_228329608.1;Name=WP_228329608.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS13960;product=IS1595-like element ISXo5 family transposase;protein_id=WP_228329608.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 2970161 2971003 . - . ID=gene-LLC55_RS13965;Name=LLC55_RS13965;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS13965;old_locus_tag=LLC55_13970;partial=true;pseudo=true;start_range=.,2970161 NZ_CP086200.1 Protein Homology CDS 2970161 2971003 . - 0 ID=cds-LLC55_RS13965;Parent=gene-LLC55_RS13965;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611069.1;locus_tag=LLC55_RS13965;partial=true;product=IS4 family transposase;pseudo=true;start_range=.,2970161;transl_table=11 NZ_CP086200.1 RefSeq gene 2971118 2974288 . - . ID=gene-LLC55_RS13970;Name=LLC55_RS13970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13970;old_locus_tag=LLC55_13975 NZ_CP086200.1 Protein Homology CDS 2971118 2974288 . - 0 ID=cds-WP_012444648.1;Parent=gene-LLC55_RS13970;Dbxref=Genbank:WP_012444648.1;Name=WP_012444648.1;Ontology_term=GO:0042908,GO:0055085,GO:0015562,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997967.1;locus_tag=LLC55_RS13970;product=multidrug efflux RND transporter permease subunit;protein_id=WP_012444648.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2974301 2975605 . - . ID=gene-LLC55_RS13975;Name=LLC55_RS13975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13975;old_locus_tag=LLC55_13980 NZ_CP086200.1 Protein Homology CDS 2974301 2975605 . - 0 ID=cds-WP_012444649.1;Parent=gene-LLC55_RS13975;Dbxref=Genbank:WP_012444649.1;Name=WP_012444649.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171867.1;locus_tag=LLC55_RS13975;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_012444649.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2975620 2976279 . - . ID=gene-LLC55_RS13980;Name=LLC55_RS13980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13980;old_locus_tag=LLC55_13985 NZ_CP086200.1 Protein Homology CDS 2975620 2976279 . - 0 ID=cds-WP_027703873.1;Parent=gene-LLC55_RS13980;Dbxref=Genbank:WP_027703873.1;Name=WP_027703873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917360.1;locus_tag=LLC55_RS13980;product=TetR/AcrR family transcriptional regulator;protein_id=WP_027703873.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2976557 2981581 . + . ID=gene-LLC55_RS13985;Name=LLC55_RS13985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13985;old_locus_tag=LLC55_13990 NZ_CP086200.1 Protein Homology CDS 2976557 2981581 . + 0 ID=cds-WP_069964847.1;Parent=gene-LLC55_RS13985;Dbxref=Genbank:WP_069964847.1;Name=WP_069964847.1;Ontology_term=GO:0019551,GO:0004352;gbkey=CDS;go_function=glutamate dehydrogenase (NAD+) activity|0004352||IEA;go_process=glutamate catabolic process to 2-oxoglutarate|0019551||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051626.1;locus_tag=LLC55_RS13985;product=NAD-glutamate dehydrogenase;protein_id=WP_069964847.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2982030 2983010 . + . ID=gene-LLC55_RS13990;Name=LLC55_RS13990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13990;old_locus_tag=LLC55_13995 NZ_CP086200.1 Protein Homology CDS 2982030 2983010 . + 0 ID=cds-WP_012445831.1;Parent=gene-LLC55_RS13990;Dbxref=Genbank:WP_012445831.1;Name=WP_012445831.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_022557821.1;locus_tag=LLC55_RS13990;product=IS5 family transposase;protein_id=WP_012445831.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2983135 2984121 . - . ID=gene-LLC55_RS13995;Name=LLC55_RS13995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS13995;old_locus_tag=LLC55_14000 NZ_CP086200.1 Protein Homology CDS 2983135 2984121 . - 0 ID=cds-WP_027703772.1;Parent=gene-LLC55_RS13995;Dbxref=Genbank:WP_027703772.1;Name=WP_027703772.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259389.1;locus_tag=LLC55_RS13995;product=response regulator;protein_id=WP_027703772.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2984155 2988249 . - . ID=gene-LLC55_RS14000;Name=LLC55_RS14000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14000;old_locus_tag=LLC55_14005 NZ_CP086200.1 Protein Homology CDS 2984155 2988249 . - 0 ID=cds-WP_075242283.1;Parent=gene-LLC55_RS14000;Dbxref=Genbank:WP_075242283.1;Name=WP_075242283.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962777.1;locus_tag=LLC55_RS14000;product=response regulator;protein_id=WP_075242283.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2988391 2989695 . - . ID=gene-LLC55_RS14005;Name=LLC55_RS14005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14005;old_locus_tag=LLC55_14010 NZ_CP086200.1 Protein Homology CDS 2988391 2989695 . - 0 ID=cds-WP_011408789.1;Parent=gene-LLC55_RS14005;Dbxref=Genbank:WP_011408789.1;Name=WP_011408789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408789.1;locus_tag=LLC55_RS14005;product=DUF445 family protein;protein_id=WP_011408789.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2989866 2990720 . - . ID=gene-LLC55_RS14010;Name=LLC55_RS14010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14010;old_locus_tag=LLC55_14015 NZ_CP086200.1 Protein Homology CDS 2989866 2990720 . - 0 ID=cds-WP_011408788.1;Parent=gene-LLC55_RS14010;Dbxref=Genbank:WP_011408788.1;Name=WP_011408788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915330.1;locus_tag=LLC55_RS14010;product=hypothetical protein;protein_id=WP_011408788.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2990887 2994024 . + . ID=gene-LLC55_RS14015;Name=LLC55_RS14015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14015;old_locus_tag=LLC55_14020 NZ_CP086200.1 Protein Homology CDS 2990887 2994024 . + 0 ID=cds-WP_011408787.1;Parent=gene-LLC55_RS14015;Dbxref=Genbank:WP_011408787.1;Name=WP_011408787.1;Ontology_term=GO:0004386;gbkey=CDS;go_function=helicase activity|0004386||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376945.1;locus_tag=LLC55_RS14015;product=AAA domain-containing protein;protein_id=WP_011408787.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2994085 2995437 . - . ID=gene-LLC55_RS14020;Name=LLC55_RS14020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14020;old_locus_tag=LLC55_14025 NZ_CP086200.1 Protein Homology CDS 2994085 2995437 . - 0 ID=cds-WP_011259384.1;Parent=gene-LLC55_RS14020;Dbxref=Genbank:WP_011259384.1;Name=WP_011259384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259384.1;locus_tag=LLC55_RS14020;product=aspartate aminotransferase family protein;protein_id=WP_011259384.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2995967 2997691 . + . ID=gene-LLC55_RS14025;Name=LLC55_RS14025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14025;old_locus_tag=LLC55_14030 NZ_CP086200.1 Protein Homology CDS 2995967 2997691 . + 0 ID=cds-WP_011408786.1;Parent=gene-LLC55_RS14025;Dbxref=Genbank:WP_011408786.1;Name=WP_011408786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915324.1;locus_tag=LLC55_RS14025;product=OFA family MFS transporter;protein_id=WP_011408786.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2997698 2998543 . + . ID=gene-LLC55_RS14030;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=protein_coding;locus_tag=LLC55_RS14030;old_locus_tag=LLC55_14035 NZ_CP086200.1 Protein Homology CDS 2997698 2998543 . + 0 ID=cds-WP_011259382.1;Parent=gene-LLC55_RS14030;Dbxref=Genbank:WP_011259382.1;Name=WP_011259382.1;Ontology_term=GO:0009061,GO:0015942,GO:0008863,GO:0009326;gbkey=CDS;gene=fdhD;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA;go_process=anaerobic respiration|0009061||IEA,formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156198.1;locus_tag=LLC55_RS14030;product=formate dehydrogenase accessory sulfurtransferase FdhD;protein_id=WP_011259382.1;transl_table=11 NZ_CP086200.1 RefSeq gene 2998540 3000888 . + . ID=gene-LLC55_RS14035;Name=LLC55_RS14035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14035;old_locus_tag=LLC55_14040 NZ_CP086200.1 Protein Homology CDS 2998540 3000888 . + 0 ID=cds-WP_011259381.1;Parent=gene-LLC55_RS14035;Dbxref=Genbank:WP_011259381.1;Name=WP_011259381.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915320.1;locus_tag=LLC55_RS14035;product=FdhF/YdeP family oxidoreductase;protein_id=WP_011259381.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3000878 3001156 . + . ID=gene-LLC55_RS14040;Name=LLC55_RS14040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14040;old_locus_tag=LLC55_14045 NZ_CP086200.1 Protein Homology CDS 3000878 3001156 . + 0 ID=cds-WP_011408785.1;Parent=gene-LLC55_RS14040;Dbxref=Genbank:WP_011408785.1;Name=WP_011408785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301208.1;locus_tag=LLC55_RS14040;product=hypothetical protein;protein_id=WP_011408785.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3001462 3002742 . + . ID=gene-LLC55_RS14045;Name=LLC55_RS14045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14045;old_locus_tag=LLC55_14050 NZ_CP086200.1 Protein Homology CDS 3001462 3002742 . + 0 ID=cds-WP_011408784.1;Parent=gene-LLC55_RS14045;Dbxref=Genbank:WP_011408784.1;Name=WP_011408784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301209.1;locus_tag=LLC55_RS14045;product=MFS transporter;protein_id=WP_011408784.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3003050 3004348 . - . ID=gene-LLC55_RS14050;Name=LLC55_RS14050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14050;old_locus_tag=LLC55_14055 NZ_CP086200.1 Protein Homology CDS 3003050 3004348 . - 0 ID=cds-WP_011259379.1;Parent=gene-LLC55_RS14050;Dbxref=Genbank:WP_011259379.1;Name=WP_011259379.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112538.1;locus_tag=LLC55_RS14050;product=diguanylate cyclase;protein_id=WP_011259379.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3004431 3005750 . - . ID=gene-LLC55_RS14055;Name=LLC55_RS14055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14055;old_locus_tag=LLC55_14060 NZ_CP086200.1 Protein Homology CDS 3004431 3005750 . - 0 ID=cds-WP_173340387.1;Parent=gene-LLC55_RS14055;Dbxref=Genbank:WP_173340387.1;Name=WP_173340387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851516.1;locus_tag=LLC55_RS14055;product=FAD-binding oxidoreductase;protein_id=WP_173340387.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3005747 3007126 . - . ID=gene-LLC55_RS14060;Name=LLC55_RS14060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14060;old_locus_tag=LLC55_14065 NZ_CP086200.1 Protein Homology CDS 3005747 3007126 . - 0 ID=cds-WP_011259377.1;Parent=gene-LLC55_RS14060;Dbxref=Genbank:WP_011259377.1;Name=WP_011259377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347795.1;locus_tag=LLC55_RS14060;product=glutamine synthetase family protein;protein_id=WP_011259377.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3007271 3008027 . + . ID=gene-LLC55_RS14065;Name=LLC55_RS14065;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14065;old_locus_tag=LLC55_14070;pseudo=true NZ_CP086200.1 Protein Homology CDS 3007271 3008027 . + 0 ID=cds-LLC55_RS14065;Parent=gene-LLC55_RS14065;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488313.1;locus_tag=LLC55_RS14065;product=gamma-glutamyl-gamma-aminobutyrate hydrolase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3008034 3009419 . + . ID=gene-LLC55_RS14070;Name=LLC55_RS14070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14070;old_locus_tag=LLC55_14075 NZ_CP086200.1 Protein Homology CDS 3008034 3009419 . + 0 ID=cds-WP_011408781.1;Parent=gene-LLC55_RS14070;Dbxref=Genbank:WP_011408781.1;Name=WP_011408781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508026.1;locus_tag=LLC55_RS14070;product=glutamine synthetase family protein;protein_id=WP_011408781.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3009723 3011041 . - . ID=gene-LLC55_RS14075;Name=LLC55_RS14075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14075;old_locus_tag=LLC55_14080;pseudo=true NZ_CP086200.1 Protein Homology CDS 3009723 3011041 . - 0 ID=cds-LLC55_RS14075;Parent=gene-LLC55_RS14075;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS14075;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3011548 3012750 . + . ID=gene-LLC55_RS14080;Name=LLC55_RS14080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14080;old_locus_tag=LLC55_14085 NZ_CP086200.1 Protein Homology CDS 3011548 3012750 . + 0 ID=cds-WP_011408779.1;Parent=gene-LLC55_RS14080;Dbxref=Genbank:WP_011408779.1;Name=WP_011408779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159217.1;locus_tag=LLC55_RS14080;product=HlyD family secretion protein;protein_id=WP_011408779.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3012747 3014333 . + . ID=gene-LLC55_RS14085;Name=LLC55_RS14085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14085;old_locus_tag=LLC55_14090 NZ_CP086200.1 Protein Homology CDS 3012747 3014333 . + 0 ID=cds-WP_011408778.1;Parent=gene-LLC55_RS14085;Dbxref=Genbank:WP_011408778.1;Name=WP_011408778.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302223.1;locus_tag=LLC55_RS14085;product=MDR family MFS transporter;protein_id=WP_011408778.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3014338 3015831 . + . ID=gene-LLC55_RS14090;Name=LLC55_RS14090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14090;old_locus_tag=LLC55_14095 NZ_CP086200.1 Protein Homology CDS 3014338 3015831 . + 0 ID=cds-WP_011408777.1;Parent=gene-LLC55_RS14090;Dbxref=Genbank:WP_011408777.1;Name=WP_011408777.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156183.1;locus_tag=LLC55_RS14090;product=efflux transporter outer membrane subunit;protein_id=WP_011408777.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3015977 3017224 . + . ID=gene-LLC55_RS14095;Name=potA;gbkey=Gene;gene=potA;gene_biotype=protein_coding;locus_tag=LLC55_RS14095;old_locus_tag=LLC55_14100 NZ_CP086200.1 Protein Homology CDS 3015977 3017224 . + 0 ID=cds-WP_075240820.1;Parent=gene-LLC55_RS14095;Dbxref=Genbank:WP_075240820.1;Name=WP_075240820.1;Ontology_term=GO:0015846,GO:0005524,GO:0015417,GO:0009898,GO:0055052;gbkey=CDS;gene=potA;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ABC-type polyamine transporter activity|0015417||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408776.1;locus_tag=LLC55_RS14095;product=polyamine ABC transporter ATP-binding protein;protein_id=WP_075240820.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3017106 3017522 . + . ID=gene-LLC55_RS14100;Name=LLC55_RS14100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14100;old_locus_tag=LLC55_14105;partial=true;pseudo=true;start_range=.,3017106 NZ_CP086200.1 Protein Homology CDS 3017106 3017522 . + 0 ID=cds-LLC55_RS14100;Parent=gene-LLC55_RS14100;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849508.1;locus_tag=LLC55_RS14100;partial=true;product=ABC transporter permease subunit;pseudo=true;start_range=.,3017106;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3017519 3018368 . + . ID=gene-LLC55_RS14105;Name=LLC55_RS14105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14105;old_locus_tag=LLC55_14110;pseudo=true NZ_CP086200.1 Protein Homology CDS 3017519 3018368 . + 0 ID=cds-LLC55_RS14105;Parent=gene-LLC55_RS14105;Note=frameshifted;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302219.1;locus_tag=LLC55_RS14105;product=ABC transporter permease subunit;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3018524 3019105 . - . ID=gene-LLC55_RS14110;Name=LLC55_RS14110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14110;old_locus_tag=LLC55_14115 NZ_CP086200.1 GeneMarkS-2+ CDS 3018524 3019105 . - 0 ID=cds-WP_228329609.1;Parent=gene-LLC55_RS14110;Dbxref=Genbank:WP_228329609.1;Name=WP_228329609.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS14110;product=hypothetical protein;protein_id=WP_228329609.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3019189 3020553 . + . ID=gene-LLC55_RS14115;Name=LLC55_RS14115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14115;old_locus_tag=LLC55_14120 NZ_CP086200.1 Protein Homology CDS 3019189 3020553 . + 0 ID=cds-WP_011408772.1;Parent=gene-LLC55_RS14115;Dbxref=Genbank:WP_011408772.1;Name=WP_011408772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488331.1;locus_tag=LLC55_RS14115;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_011408772.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3020705 3021706 . - . ID=gene-LLC55_RS14120;Name=LLC55_RS14120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14120;old_locus_tag=LLC55_14125 NZ_CP086200.1 Protein Homology CDS 3020705 3021706 . - 0 ID=cds-WP_011259367.1;Parent=gene-LLC55_RS14120;Dbxref=Genbank:WP_011259367.1;Name=WP_011259367.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488333.1;locus_tag=LLC55_RS14120;product=magnesium and cobalt transport protein CorA;protein_id=WP_011259367.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3021722 3023002 . - . ID=gene-LLC55_RS14125;Name=LLC55_RS14125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14125;old_locus_tag=LLC55_14130 NZ_CP086200.1 Protein Homology CDS 3021722 3023002 . - 0 ID=cds-WP_011259366.1;Parent=gene-LLC55_RS14125;Dbxref=Genbank:WP_011259366.1;Name=WP_011259366.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382454.1;locus_tag=LLC55_RS14125;product=DUF4105 domain-containing protein;protein_id=WP_011259366.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3022999 3023877 . - . ID=gene-LLC55_RS14130;Name=LLC55_RS14130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14130;old_locus_tag=LLC55_14135 NZ_CP086200.1 Protein Homology CDS 3022999 3023877 . - 0 ID=cds-WP_011408770.1;Parent=gene-LLC55_RS14130;Dbxref=Genbank:WP_011408770.1;Name=WP_011408770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488337.1;locus_tag=LLC55_RS14130;product=CBS domain-containing protein;protein_id=WP_011408770.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3023972 3024490 . - . ID=gene-LLC55_RS14135;Name=LLC55_RS14135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14135;old_locus_tag=LLC55_14140 NZ_CP086200.1 Protein Homology CDS 3023972 3024490 . - 0 ID=cds-WP_011408769.1;Parent=gene-LLC55_RS14135;Dbxref=Genbank:WP_011408769.1;Name=WP_011408769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347782.1;locus_tag=LLC55_RS14135;product=hypothetical protein;protein_id=WP_011408769.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3024490 3024975 . - . ID=gene-LLC55_RS14140;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=LLC55_RS14140;old_locus_tag=LLC55_14145 NZ_CP086200.1 Protein Homology CDS 3024490 3024975 . - 0 ID=cds-WP_011259363.1;Parent=gene-LLC55_RS14140;Dbxref=Genbank:WP_011259363.1;Name=WP_011259363.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=ribonuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901623.1;locus_tag=LLC55_RS14140;product=rRNA maturation RNase YbeY;protein_id=WP_011259363.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3025030 3025692 . - . ID=gene-LLC55_RS14145;Name=LLC55_RS14145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14145;old_locus_tag=LLC55_14150 NZ_CP086200.1 Protein Homology CDS 3025030 3025692 . - 0 ID=cds-WP_011259362.1;Parent=gene-LLC55_RS14145;Dbxref=Genbank:WP_011259362.1;Name=WP_011259362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051605.1;locus_tag=LLC55_RS14145;product=hypothetical protein;protein_id=WP_011259362.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3026104 3027090 . - . ID=gene-LLC55_RS14150;Name=LLC55_RS14150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14150;old_locus_tag=LLC55_14155 NZ_CP086200.1 Protein Homology CDS 3026104 3027090 . - 0 ID=cds-WP_011408767.1;Parent=gene-LLC55_RS14150;Dbxref=Genbank:WP_011408767.1;Name=WP_011408767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408767.1;locus_tag=LLC55_RS14150;product=PhoH family protein;protein_id=WP_011408767.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3027514 3028968 . - . ID=gene-LLC55_RS14155;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=LLC55_RS14155;old_locus_tag=LLC55_14160 NZ_CP086200.1 Protein Homology CDS 3027514 3028968 . - 0 ID=cds-WP_011408766.1;Parent=gene-LLC55_RS14155;Dbxref=Genbank:WP_011408766.1;Name=WP_011408766.1;Ontology_term=GO:0006400,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=miaB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182646.1;locus_tag=LLC55_RS14155;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=WP_011408766.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3029007 3029643 . - . ID=gene-LLC55_RS14160;Name=LLC55_RS14160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14160;old_locus_tag=LLC55_14165;pseudo=true NZ_CP086200.1 Protein Homology CDS 3029007 3029643 . - 0 ID=cds-LLC55_RS14160;Parent=gene-LLC55_RS14160;Note=frameshifted;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382438.1;locus_tag=LLC55_RS14160;product=glutathione S-transferase N-terminal domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3029777 3030696 . + . ID=gene-LLC55_RS14165;Name=LLC55_RS14165;end_range=3030696,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14165;old_locus_tag=LLC55_14170;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3029777 3030696 . + 0 ID=cds-LLC55_RS14165;Parent=gene-LLC55_RS14165;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3030696,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156170.1;locus_tag=LLC55_RS14165;partial=true;product=WYL domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3030721 3030795 . - . ID=gene-LLC55_RS14170;Name=LLC55_RS14170;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS14170;old_locus_tag=LLC55_14175 NZ_CP086200.1 cmsearch ncRNA 3030721 3030795 . - . ID=rna-LLC55_RS14170;Parent=gene-LLC55_RS14170;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS14170;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3030721 3030795 . - . ID=exon-LLC55_RS14170-1;Parent=rna-LLC55_RS14170;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS14170;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3030909 3031895 . + . ID=gene-LLC55_RS14175;Name=LLC55_RS14175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14175;old_locus_tag=LLC55_14180 NZ_CP086200.1 Protein Homology CDS 3030909 3031895 . + 0 ID=cds-WP_012444681.1;Parent=gene-LLC55_RS14175;Dbxref=Genbank:WP_012444681.1;Name=WP_012444681.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171389.1;locus_tag=LLC55_RS14175;product=lytic transglycosylase domain-containing protein;protein_id=WP_012444681.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3032425 3033069 . + . ID=gene-LLC55_RS14180;Name=petA;gbkey=Gene;gene=petA;gene_biotype=protein_coding;locus_tag=LLC55_RS14180;old_locus_tag=LLC55_14185 NZ_CP086200.1 Protein Homology CDS 3032425 3033069 . + 0 ID=cds-WP_011259356.1;Parent=gene-LLC55_RS14180;Dbxref=Genbank:WP_011259356.1;Name=WP_011259356.1;Ontology_term=GO:0009060,GO:0008121,GO:0009055,GO:0045275;gbkey=CDS;gene=petA;go_component=respiratory chain complex III|0045275||IEA;go_function=ubiquinol-cytochrome-c reductase activity|0008121||IEA,electron transfer activity|0009055||IEA;go_process=aerobic respiration|0009060||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382428.1;locus_tag=LLC55_RS14180;product=ubiquinol-cytochrome c reductase iron-sulfur subunit;protein_id=WP_011259356.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3033069 3034328 . + . ID=gene-LLC55_RS14185;Name=LLC55_RS14185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14185;old_locus_tag=LLC55_14190 NZ_CP086200.1 Protein Homology CDS 3033069 3034328 . + 0 ID=cds-WP_011259355.1;Parent=gene-LLC55_RS14185;Dbxref=Genbank:WP_011259355.1;Name=WP_011259355.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965674.1;locus_tag=LLC55_RS14185;product=cytochrome bc complex cytochrome b subunit;protein_id=WP_011259355.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3034321 3035079 . + . ID=gene-LLC55_RS14190;Name=LLC55_RS14190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14190;old_locus_tag=LLC55_14195 NZ_CP086200.1 Protein Homology CDS 3034321 3035079 . + 0 ID=cds-WP_011259354.1;Parent=gene-LLC55_RS14190;Dbxref=Genbank:WP_011259354.1;Name=WP_011259354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113706.1;locus_tag=LLC55_RS14190;product=cytochrome c1;protein_id=WP_011259354.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3035473 3036108 . + . ID=gene-LLC55_RS14195;Name=LLC55_RS14195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14195;old_locus_tag=LLC55_14200 NZ_CP086200.1 Protein Homology CDS 3035473 3036108 . + 0 ID=cds-WP_011259353.1;Parent=gene-LLC55_RS14195;Dbxref=Genbank:WP_011259353.1;Name=WP_011259353.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810483.1;locus_tag=LLC55_RS14195;product=glutathione S-transferase N-terminal domain-containing protein;protein_id=WP_011259353.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3036187 3036627 . + . ID=gene-LLC55_RS14200;Name=LLC55_RS14200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14200;old_locus_tag=LLC55_14205 NZ_CP086200.1 Protein Homology CDS 3036187 3036627 . + 0 ID=cds-WP_011259352.1;Parent=gene-LLC55_RS14200;Dbxref=Genbank:WP_011259352.1;Name=WP_011259352.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901612.1;locus_tag=LLC55_RS14200;product=ClpXP protease specificity-enhancing factor;protein_id=WP_011259352.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3036660 3036986 . + . ID=gene-LLC55_RS14205;Name=LLC55_RS14205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14205;old_locus_tag=LLC55_14210 NZ_CP086200.1 Protein Homology CDS 3036660 3036986 . + 0 ID=cds-WP_011408764.1;Parent=gene-LLC55_RS14205;Dbxref=Genbank:WP_011408764.1;Name=WP_011408764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503015.1;locus_tag=LLC55_RS14205;product=hypothetical protein;protein_id=WP_011408764.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3037197 3037541 . - . ID=gene-LLC55_RS14210;Name=LLC55_RS14210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14210;old_locus_tag=LLC55_14215 NZ_CP086200.1 Protein Homology CDS 3037197 3037541 . - 0 ID=cds-WP_042465594.1;Parent=gene-LLC55_RS14210;Dbxref=Genbank:WP_042465594.1;Name=WP_042465594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382418.1;locus_tag=LLC55_RS14210;product=DUF3301 domain-containing protein;protein_id=WP_042465594.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3037768 3039603 . + . ID=gene-LLC55_RS14215;Name=LLC55_RS14215;end_range=3039603,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14215;old_locus_tag=LLC55_14220;partial=true;pseudo=true;start_range=.,3037768 NZ_CP086200.1 Protein Homology CDS 3037768 3039603 . + 0 ID=cds-LLC55_RS14215;Parent=gene-LLC55_RS14215;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3039603,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090390.1;locus_tag=LLC55_RS14215;partial=true;product=helicase-related protein;pseudo=true;start_range=.,3037768;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3039835 3041447 . + . ID=gene-LLC55_RS14220;Name=LLC55_RS14220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14220;old_locus_tag=LLC55_14225;partial=true;pseudo=true;start_range=.,3039835 NZ_CP086200.1 Protein Homology CDS 3039835 3041447 . + 0 ID=cds-LLC55_RS14220;Parent=gene-LLC55_RS14220;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463325.1;locus_tag=LLC55_RS14220;partial=true;product=ATP-dependent DNA helicase;pseudo=true;start_range=.,3039835;transl_table=11 NZ_CP086200.1 RefSeq gene 3041399 3041956 . - . ID=gene-LLC55_RS14225;Name=LLC55_RS14225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14225;old_locus_tag=LLC55_14230 NZ_CP086200.1 Protein Homology CDS 3041399 3041956 . - 0 ID=cds-WP_011259349.1;Parent=gene-LLC55_RS14225;Dbxref=Genbank:WP_011259349.1;Name=WP_011259349.1;Ontology_term=GO:0006284,GO:0003905;gbkey=CDS;go_function=alkylbase DNA N-glycosylase activity|0003905||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944546.1;locus_tag=LLC55_RS14225;product=DNA-3-methyladenine glycosylase;protein_id=WP_011259349.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3042106 3043071 . - . ID=gene-LLC55_RS14230;Name=LLC55_RS14230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14230;old_locus_tag=LLC55_14235 NZ_CP086200.1 Protein Homology CDS 3042106 3043071 . - 0 ID=cds-WP_109181928.1-3;Parent=gene-LLC55_RS14230;Dbxref=Genbank:WP_109181928.1;Name=WP_109181928.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS14230;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181928.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3043652 3044836 . + . ID=gene-LLC55_RS14235;Name=LLC55_RS14235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14235;old_locus_tag=LLC55_14240 NZ_CP086200.1 Protein Homology CDS 3043652 3044836 . + 0 ID=cds-WP_011408397.1;Parent=gene-LLC55_RS14235;Dbxref=Genbank:WP_011408397.1;Name=WP_011408397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS14235;product=IS256-like element IS1113 family transposase;protein_id=WP_011408397.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3045742 3046086 . + . ID=gene-LLC55_RS14240;Name=LLC55_RS14240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14240;old_locus_tag=LLC55_14245 NZ_CP086200.1 GeneMarkS-2+ CDS 3045742 3046086 . + 0 ID=cds-WP_199285675.1;Parent=gene-LLC55_RS14240;Dbxref=Genbank:WP_199285675.1;Name=WP_199285675.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS14240;product=hypothetical protein;protein_id=WP_199285675.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3046282 3046560 . + . ID=gene-LLC55_RS14245;Name=LLC55_RS14245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14245;old_locus_tag=LLC55_14255 NZ_CP086200.1 Protein Homology CDS 3046282 3046560 . + 0 ID=cds-WP_011408759.1;Parent=gene-LLC55_RS14245;Dbxref=Genbank:WP_011408759.1;Name=WP_011408759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408759.1;locus_tag=LLC55_RS14245;product=CopG family ribbon-helix-helix protein;protein_id=WP_011408759.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3046587 3046838 . + . ID=gene-LLC55_RS14250;Name=LLC55_RS14250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14250;old_locus_tag=LLC55_14260 NZ_CP086200.1 Protein Homology CDS 3046587 3046838 . + 0 ID=cds-WP_229001948.1;Parent=gene-LLC55_RS14250;Dbxref=Genbank:WP_229001948.1;Name=WP_229001948.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016876.2;locus_tag=LLC55_RS14250;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_229001948.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3047099 3047296 . + . ID=gene-LLC55_RS14255;Name=LLC55_RS14255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14255;old_locus_tag=LLC55_14265 NZ_CP086200.1 Protein Homology CDS 3047099 3047296 . + 0 ID=cds-WP_153296741.1;Parent=gene-LLC55_RS14255;Dbxref=Genbank:WP_153296741.1;Name=WP_153296741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006401351.1;locus_tag=LLC55_RS14255;product=hypothetical protein;protein_id=WP_153296741.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3047365 3047619 . + . ID=gene-LLC55_RS14260;Name=LLC55_RS14260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14260;old_locus_tag=LLC55_14270 NZ_CP086200.1 GeneMarkS-2+ CDS 3047365 3047619 . + 0 ID=cds-WP_223293127.1;Parent=gene-LLC55_RS14260;Dbxref=Genbank:WP_223293127.1;Name=WP_223293127.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS14260;product=hypothetical protein;protein_id=WP_223293127.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3047836 3047955 . + . ID=gene-LLC55_RS14265;Name=LLC55_RS14265;end_range=3047955,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14265;old_locus_tag=LLC55_14275;partial=true;pseudo=true;start_range=.,3047836 NZ_CP086200.1 Protein Homology CDS 3047836 3047955 . + 0 ID=cds-LLC55_RS14265;Parent=gene-LLC55_RS14265;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3047955,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612267.1;locus_tag=LLC55_RS14265;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,3047836;transl_table=11 NZ_CP086200.1 RefSeq gene 3047924 3048052 . + . ID=gene-LLC55_RS23485;Name=LLC55_RS23485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23485 NZ_CP086200.1 GeneMarkS-2+ CDS 3047924 3048052 . + 0 ID=cds-WP_012444694.1;Parent=gene-LLC55_RS23485;Dbxref=Genbank:WP_012444694.1;Name=WP_012444694.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23485;product=hypothetical protein;protein_id=WP_012444694.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3048315 3048390 . - . ID=gene-LLC55_RS14270;Name=LLC55_RS14270;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS14270;old_locus_tag=LLC55_14280 NZ_CP086200.1 tRNAscan-SE tRNA 3048315 3048390 . - . ID=rna-LLC55_RS14270;Parent=gene-LLC55_RS14270;anticodon=(pos:complement(3048355..3048357));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14270;product=tRNA-Ala NZ_CP086200.1 tRNAscan-SE exon 3048315 3048390 . - . ID=exon-LLC55_RS14270-1;Parent=rna-LLC55_RS14270;anticodon=(pos:complement(3048355..3048357));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14270;product=tRNA-Ala NZ_CP086200.1 RefSeq gene 3048483 3048884 . - . ID=gene-LLC55_RS14275;Name=LLC55_RS14275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14275;old_locus_tag=LLC55_14285 NZ_CP086200.1 Protein Homology CDS 3048483 3048884 . - 0 ID=cds-WP_011259345.1;Parent=gene-LLC55_RS14275;Dbxref=Genbank:WP_011259345.1;Name=WP_011259345.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485983.1;locus_tag=LLC55_RS14275;product=H-NS family nucleoid-associated regulatory protein;protein_id=WP_011259345.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3049106 3049282 . + . ID=gene-LLC55_RS14280;Name=LLC55_RS14280;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14280;old_locus_tag=LLC55_14290;pseudo=true NZ_CP086200.1 Protein Homology CDS 3049106 3049282 . + 0 ID=cds-LLC55_RS14280;Parent=gene-LLC55_RS14280;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503050.1;locus_tag=LLC55_RS14280;product=DUF3606 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3049564 3049901 . + . ID=gene-LLC55_RS14285;Name=LLC55_RS14285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14285;old_locus_tag=LLC55_14300;partial=true;pseudo=true;start_range=.,3049564 NZ_CP086200.1 Protein Homology CDS 3049564 3049901 . + 0 ID=cds-LLC55_RS14285;Parent=gene-LLC55_RS14285;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159207.1;locus_tag=LLC55_RS14285;partial=true;product=ATP-dependent DNA ligase;pseudo=true;start_range=.,3049564;transl_table=11 NZ_CP086200.1 RefSeq gene 3049977 3051068 . - . ID=gene-LLC55_RS14290;Name=rnd;gbkey=Gene;gene=rnd;gene_biotype=protein_coding;locus_tag=LLC55_RS14290;old_locus_tag=LLC55_14305 NZ_CP086200.1 Protein Homology CDS 3049977 3051068 . - 0 ID=cds-WP_041182166.1;Parent=gene-LLC55_RS14290;Dbxref=Genbank:WP_041182166.1;Name=WP_041182166.1;Ontology_term=GO:0006396,GO:0016891;gbkey=CDS;gene=rnd;go_function=endoribonuclease activity%2C producing 5'-phosphomonoesters|0016891||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171603.1;locus_tag=LLC55_RS14290;product=ribonuclease D;protein_id=WP_041182166.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3051276 3051351 . + . ID=gene-LLC55_RS14295;Name=LLC55_RS14295;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS14295;old_locus_tag=LLC55_14310 NZ_CP086200.1 cmsearch ncRNA 3051276 3051351 . + . ID=rna-LLC55_RS14295;Parent=gene-LLC55_RS14295;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS14295;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3051276 3051351 . + . ID=exon-LLC55_RS14295-1;Parent=rna-LLC55_RS14295;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS14295;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3051340 3053175 . + . ID=gene-LLC55_RS14300;Name=LLC55_RS14300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14300;old_locus_tag=LLC55_14315 NZ_CP086200.1 Protein Homology CDS 3051340 3053175 . + 0 ID=cds-WP_041182165.1;Parent=gene-LLC55_RS14300;Dbxref=Genbank:WP_041182165.1;Name=WP_041182165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112352.1;locus_tag=LLC55_RS14300;product=formylglycine-generating enzyme family protein;protein_id=WP_041182165.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3053492 3054239 . + . ID=gene-LLC55_RS14305;Name=LLC55_RS14305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14305;old_locus_tag=LLC55_14320 NZ_CP086200.1 Protein Homology CDS 3053492 3053701 . + 0 ID=cds-WP_200898179.1;Parent=gene-LLC55_RS14305;Dbxref=Genbank:WP_200898179.1;Name=WP_200898179.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612132.1;locus_tag=LLC55_RS14305;product=IS5 family transposase;protein_id=WP_200898179.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3053703 3054239 . + 0 ID=cds-WP_200898179.1;Parent=gene-LLC55_RS14305;Dbxref=Genbank:WP_200898179.1;Name=WP_200898179.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612132.1;locus_tag=LLC55_RS14305;product=IS5 family transposase;protein_id=WP_200898179.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3054456 3055718 . + . ID=gene-LLC55_RS14310;Name=LLC55_RS14310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14310;old_locus_tag=LLC55_14325 NZ_CP086200.1 Protein Homology CDS 3054456 3055718 . + 0 ID=cds-WP_069959887.1;Parent=gene-LLC55_RS14310;Dbxref=Genbank:WP_069959887.1;Name=WP_069959887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503060.1;locus_tag=LLC55_RS14310;product=virulence factor;protein_id=WP_069959887.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3056014 3057351 . - . ID=gene-LLC55_RS14315;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=LLC55_RS14315;old_locus_tag=LLC55_14330 NZ_CP086200.1 Protein Homology CDS 3056014 3057351 . - 0 ID=cds-WP_041182164.1;Parent=gene-LLC55_RS14315;Dbxref=Genbank:WP_041182164.1;Name=WP_041182164.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372660.1;locus_tag=LLC55_RS14315;product=exodeoxyribonuclease VII large subunit;protein_id=WP_041182164.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3057435 3058198 . + . ID=gene-LLC55_RS14320;Name=LLC55_RS14320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14320;old_locus_tag=LLC55_14335 NZ_CP086200.1 Protein Homology CDS 3057435 3057750 . + 0 ID=cds-WP_094187715.1-6;Parent=gene-LLC55_RS14320;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS14320;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3057750 3058198 . + 2 ID=cds-WP_094187715.1-6;Parent=gene-LLC55_RS14320;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS14320;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3058313 3059380 . - . ID=gene-LLC55_RS14325;Name=queG;gbkey=Gene;gene=queG;gene_biotype=protein_coding;locus_tag=LLC55_RS14325;old_locus_tag=LLC55_14340 NZ_CP086200.1 Protein Homology CDS 3058313 3059380 . - 0 ID=cds-WP_069959886.1;Parent=gene-LLC55_RS14325;Dbxref=Genbank:WP_069959886.1;Name=WP_069959886.1;Ontology_term=GO:0008616,GO:0051539,GO:0052693;gbkey=CDS;gene=queG;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051562.1;locus_tag=LLC55_RS14325;product=tRNA epoxyqueuosine(34) reductase QueG;protein_id=WP_069959886.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3059405 3060892 . + . ID=gene-LLC55_RS14330;Name=LLC55_RS14330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14330;old_locus_tag=LLC55_14345 NZ_CP086200.1 Protein Homology CDS 3059405 3060892 . + 0 ID=cds-WP_011259337.1;Parent=gene-LLC55_RS14330;Dbxref=Genbank:WP_011259337.1;Name=WP_011259337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965703.1;locus_tag=LLC55_RS14330;product=bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase;protein_id=WP_011259337.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3060889 3061389 . + . ID=gene-LLC55_RS14335;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=LLC55_RS14335;old_locus_tag=LLC55_14350 NZ_CP086200.1 Protein Homology CDS 3060889 3061389 . + 0 ID=cds-WP_012444701.1;Parent=gene-LLC55_RS14335;Dbxref=Genbank:WP_012444701.1;Name=WP_012444701.1;Ontology_term=GO:0006400,GO:0016887,GO:0005737;gbkey=CDS;gene=tsaE;go_component=cytoplasm|0005737||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156148.1;locus_tag=LLC55_RS14335;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=WP_012444701.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3061460 3063175 . + . ID=gene-LLC55_RS14340;Name=LLC55_RS14340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14340;old_locus_tag=LLC55_14355 NZ_CP086200.1 Protein Homology CDS 3061460 3063175 . + 0 ID=cds-WP_027703275.1;Parent=gene-LLC55_RS14340;Dbxref=Genbank:WP_027703275.1;Name=WP_027703275.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159951.1;locus_tag=LLC55_RS14340;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_027703275.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3063313 3065190 . + . ID=gene-LLC55_RS14345;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=LLC55_RS14345;old_locus_tag=LLC55_14360 NZ_CP086200.1 Protein Homology CDS 3063313 3065190 . + 0 ID=cds-WP_011259334.1;Parent=gene-LLC55_RS14345;Dbxref=Genbank:WP_011259334.1;Name=WP_011259334.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486008.1;locus_tag=LLC55_RS14345;product=DNA mismatch repair endonuclease MutL;protein_id=WP_011259334.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3065190 3066131 . + . ID=gene-LLC55_RS14350;Name=LLC55_RS14350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14350;old_locus_tag=LLC55_14365 NZ_CP086200.1 Protein Homology CDS 3065190 3066131 . + 0 ID=cds-WP_011408750.1;Parent=gene-LLC55_RS14350;Dbxref=Genbank:WP_011408750.1;Name=WP_011408750.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913042.1;locus_tag=LLC55_RS14350;product=DUF1684 domain-containing protein;protein_id=WP_011408750.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3066165 3067136 . + . ID=gene-LLC55_RS14355;Name=LLC55_RS14355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14355;old_locus_tag=LLC55_14370 NZ_CP086200.1 Protein Homology CDS 3066165 3067136 . + 0 ID=cds-WP_011408749.1;Parent=gene-LLC55_RS14355;Dbxref=Genbank:WP_011408749.1;Name=WP_011408749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116190.1;locus_tag=LLC55_RS14355;product=TraB/GumN family protein;protein_id=WP_011408749.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3067310 3067885 . - . ID=gene-LLC55_RS14360;Name=phaR;gbkey=Gene;gene=phaR;gene_biotype=protein_coding;locus_tag=LLC55_RS14360;old_locus_tag=LLC55_14375 NZ_CP086200.1 Protein Homology CDS 3067310 3067885 . - 0 ID=cds-WP_011259331.1;Parent=gene-LLC55_RS14360;Dbxref=Genbank:WP_011259331.1;Name=WP_011259331.1;Ontology_term=GO:0006355;gbkey=CDS;gene=phaR;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486016.1;locus_tag=LLC55_RS14360;product=polyhydroxyalkanoate synthesis repressor PhaR;protein_id=WP_011259331.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3068045 3068785 . - . ID=gene-LLC55_RS14365;Name=LLC55_RS14365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14365;old_locus_tag=LLC55_14380 NZ_CP086200.1 Protein Homology CDS 3068045 3068785 . - 0 ID=cds-WP_011408747.1;Parent=gene-LLC55_RS14365;Dbxref=Genbank:WP_011408747.1;Name=WP_011408747.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090372.1;locus_tag=LLC55_RS14365;product=beta-ketoacyl-ACP reductase;protein_id=WP_011408747.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3068873 3069772 . - . ID=gene-LLC55_RS14370;Name=gluQRS;gbkey=Gene;gene=gluQRS;gene_biotype=protein_coding;locus_tag=LLC55_RS14370;old_locus_tag=LLC55_14385 NZ_CP086200.1 Protein Homology CDS 3068873 3069772 . - 0 ID=cds-WP_011259329.1;Parent=gene-LLC55_RS14370;Dbxref=Genbank:WP_011259329.1;Name=WP_011259329.1;Ontology_term=GO:0043039,GO:0004812;gbkey=CDS;gene=gluQRS;go_function=aminoacyl-tRNA ligase activity|0004812||IEA;go_process=tRNA aminoacylation|0043039||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301023.1;locus_tag=LLC55_RS14370;product=tRNA glutamyl-Q(34) synthetase GluQRS;protein_id=WP_011259329.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3069870 3070748 . + . ID=gene-LLC55_RS14375;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=LLC55_RS14375;old_locus_tag=LLC55_14390 NZ_CP086200.1 Protein Homology CDS 3069870 3070748 . + 0 ID=cds-WP_011259328.1;Parent=gene-LLC55_RS14375;Dbxref=Genbank:WP_011259328.1;Name=WP_011259328.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=htpX;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037436.1;locus_tag=LLC55_RS14375;product=protease HtpX;protein_id=WP_011259328.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3070848 3072917 . - . ID=gene-LLC55_RS14380;Name=LLC55_RS14380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14380;old_locus_tag=LLC55_14395 NZ_CP086200.1 Protein Homology CDS 3070848 3072917 . - 0 ID=cds-WP_012444707.1;Parent=gene-LLC55_RS14380;Dbxref=Genbank:WP_012444707.1;Name=WP_012444707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037435.1;locus_tag=LLC55_RS14380;product=EAL domain-containing protein;protein_id=WP_012444707.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3073141 3074322 . - . ID=gene-LLC55_RS14385;Name=LLC55_RS14385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14385;old_locus_tag=LLC55_14400 NZ_CP086200.1 Protein Homology CDS 3073141 3074322 . - 0 ID=cds-WP_011259326.1;Parent=gene-LLC55_RS14385;Dbxref=Genbank:WP_011259326.1;Name=WP_011259326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923170.1;locus_tag=LLC55_RS14385;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_011259326.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3074319 3074867 . - . ID=gene-LLC55_RS14390;Name=LLC55_RS14390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14390;old_locus_tag=LLC55_14405 NZ_CP086200.1 Protein Homology CDS 3074319 3074867 . - 0 ID=cds-WP_011259325.1;Parent=gene-LLC55_RS14390;Dbxref=Genbank:WP_011259325.1;Name=WP_011259325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503075.1;locus_tag=LLC55_RS14390;product=YaeQ family protein;protein_id=WP_011259325.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3074938 3075423 . - . ID=gene-LLC55_RS14395;Name=LLC55_RS14395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14395;old_locus_tag=LLC55_14410 NZ_CP086200.1 Protein Homology CDS 3074938 3075423 . - 0 ID=cds-WP_011408745.1;Parent=gene-LLC55_RS14395;Dbxref=Genbank:WP_011408745.1;Name=WP_011408745.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408745.1;locus_tag=LLC55_RS14395;product=YaiI/YqxD family protein;protein_id=WP_011408745.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3075705 3075902 . + . ID=gene-LLC55_RS14400;Name=LLC55_RS14400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14400;old_locus_tag=LLC55_14415 NZ_CP086200.1 Protein Homology CDS 3075705 3075902 . + 0 ID=cds-WP_082925804.1;Parent=gene-LLC55_RS14400;Dbxref=Genbank:WP_082925804.1;Name=WP_082925804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156138.1;locus_tag=LLC55_RS14400;product=cold-shock protein;protein_id=WP_082925804.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3076073 3076771 . + . ID=gene-LLC55_RS14405;Name=LLC55_RS14405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14405;old_locus_tag=LLC55_14420 NZ_CP086200.1 Protein Homology CDS 3076073 3076771 . + 0 ID=cds-WP_012444709.1;Parent=gene-LLC55_RS14405;Dbxref=Genbank:WP_012444709.1;Name=WP_012444709.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156137.1;locus_tag=LLC55_RS14405;product=glutathione S-transferase;protein_id=WP_012444709.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3076972 3077847 . - . ID=gene-LLC55_RS14410;Name=LLC55_RS14410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14410;old_locus_tag=LLC55_14425 NZ_CP086200.1 Protein Homology CDS 3076972 3077847 . - 0 ID=cds-WP_011408742.1;Parent=gene-LLC55_RS14410;Dbxref=Genbank:WP_011408742.1;Name=WP_011408742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116192.1;locus_tag=LLC55_RS14410;product=alpha/beta hydrolase;protein_id=WP_011408742.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3078131 3079687 . + . ID=gene-LLC55_RS14415;Name=LLC55_RS14415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14415;old_locus_tag=LLC55_14430 NZ_CP086200.1 Protein Homology CDS 3078131 3079687 . + 0 ID=cds-WP_011408741.1;Parent=gene-LLC55_RS14415;Dbxref=Genbank:WP_011408741.1;Name=WP_011408741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408741.1;locus_tag=LLC55_RS14415;product=YdiU family protein;protein_id=WP_011408741.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3079785 3080345 . + . ID=gene-LLC55_RS14420;Name=LLC55_RS14420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14420;old_locus_tag=LLC55_14435 NZ_CP086200.1 Protein Homology CDS 3079785 3080345 . + 0 ID=cds-WP_011259319.1;Parent=gene-LLC55_RS14420;Dbxref=Genbank:WP_011259319.1;Name=WP_011259319.1;Ontology_term=GO:0009116,GO:0003999;gbkey=CDS;go_function=adenine phosphoribosyltransferase activity|0003999||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965724.1;locus_tag=LLC55_RS14420;product=adenine phosphoribosyltransferase;protein_id=WP_011259319.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3080448 3081824 . - . ID=gene-LLC55_RS14425;Name=dbpA;gbkey=Gene;gene=dbpA;gene_biotype=protein_coding;locus_tag=LLC55_RS14425;old_locus_tag=LLC55_14440 NZ_CP086200.1 Protein Homology CDS 3080448 3081824 . - 0 ID=cds-WP_069959885.1;Parent=gene-LLC55_RS14425;Dbxref=Genbank:WP_069959885.1;Name=WP_069959885.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=dbpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090365.1;locus_tag=LLC55_RS14425;product=ATP-dependent RNA helicase DbpA;protein_id=WP_069959885.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3081914 3083809 . + . ID=gene-LLC55_RS14430;Name=LLC55_RS14430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14430;old_locus_tag=LLC55_14445 NZ_CP086200.1 Protein Homology CDS 3081914 3083809 . + 0 ID=cds-WP_027703271.1;Parent=gene-LLC55_RS14430;Dbxref=Genbank:WP_027703271.1;Name=WP_027703271.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923190.1;locus_tag=LLC55_RS14430;product=ATP-binding cassette domain-containing protein;protein_id=WP_027703271.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3084121 3084196 . - . ID=gene-LLC55_RS14435;Name=LLC55_RS14435;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS14435;old_locus_tag=LLC55_14450 NZ_CP086200.1 cmsearch ncRNA 3084121 3084196 . - . ID=rna-LLC55_RS14435;Parent=gene-LLC55_RS14435;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS14435;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3084121 3084196 . - . ID=exon-LLC55_RS14435-1;Parent=rna-LLC55_RS14435;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS14435;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3084258 3084683 . - . ID=gene-LLC55_RS14440;Name=LLC55_RS14440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14440;old_locus_tag=LLC55_14455 NZ_CP086200.1 Protein Homology CDS 3084258 3084683 . - 0 ID=cds-WP_011259316.1;Parent=gene-LLC55_RS14440;Dbxref=Genbank:WP_011259316.1;Name=WP_011259316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486050.1;locus_tag=LLC55_RS14440;product=barstar family protein;protein_id=WP_011259316.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3084680 3085120 . - . ID=gene-LLC55_RS14445;Name=LLC55_RS14445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14445;old_locus_tag=LLC55_14460 NZ_CP086200.1 Protein Homology CDS 3084680 3085120 . - 0 ID=cds-WP_011259315.1;Parent=gene-LLC55_RS14445;Dbxref=Genbank:WP_011259315.1;Name=WP_011259315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372742.1;locus_tag=LLC55_RS14445;product=ribonuclease;protein_id=WP_011259315.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3085375 3085986 . + . ID=gene-LLC55_RS14450;Name=LLC55_RS14450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14450;old_locus_tag=LLC55_14465 NZ_CP086200.1 Protein Homology CDS 3085375 3085986 . + 0 ID=cds-WP_011259314.1;Parent=gene-LLC55_RS14450;Dbxref=Genbank:WP_011259314.1;Name=WP_011259314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037422.1;locus_tag=LLC55_RS14450;product=superoxide dismutase;protein_id=WP_011259314.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3086239 3087072 . - . ID=gene-LLC55_RS14455;Name=LLC55_RS14455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14455;old_locus_tag=LLC55_14470 NZ_CP086200.1 Protein Homology CDS 3086239 3087072 . - 0 ID=cds-WP_011408740.1;Parent=gene-LLC55_RS14455;Dbxref=Genbank:WP_011408740.1;Name=WP_011408740.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913068.1;locus_tag=LLC55_RS14455;product=inositol monophosphatase family protein;protein_id=WP_011408740.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3087191 3087955 . + . ID=gene-LLC55_RS14460;Name=LLC55_RS14460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14460;old_locus_tag=LLC55_14475 NZ_CP086200.1 Protein Homology CDS 3087191 3087955 . + 0 ID=cds-WP_011408739.1;Parent=gene-LLC55_RS14460;Dbxref=Genbank:WP_011408739.1;Name=WP_011408739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486059.1;locus_tag=LLC55_RS14460;product=RNA methyltransferase;protein_id=WP_011408739.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3088007 3088936 . + . ID=gene-LLC55_RS14465;Name=LLC55_RS14465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14465;old_locus_tag=LLC55_14480 NZ_CP086200.1 Protein Homology CDS 3088007 3088936 . + 0 ID=cds-WP_011259311.1;Parent=gene-LLC55_RS14465;Dbxref=Genbank:WP_011259311.1;Name=WP_011259311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850179.1;locus_tag=LLC55_RS14465;product=phosphate/phosphite/phosphonate ABC transporter substrate-binding protein;protein_id=WP_011259311.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3088933 3091050 . + . ID=gene-LLC55_RS14470;Name=LLC55_RS14470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14470;old_locus_tag=LLC55_14485 NZ_CP086200.1 Protein Homology CDS 3088933 3091050 . + 0 ID=cds-WP_011259310.1;Parent=gene-LLC55_RS14470;Dbxref=Genbank:WP_011259310.1;Name=WP_011259310.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168504.1;locus_tag=LLC55_RS14470;product=EAL domain-containing protein;protein_id=WP_011259310.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3091269 3092297 . - . ID=gene-LLC55_RS14475;Name=epmB;gbkey=Gene;gene=epmB;gene_biotype=protein_coding;locus_tag=LLC55_RS14475;old_locus_tag=LLC55_14490 NZ_CP086200.1 Protein Homology CDS 3091269 3092297 . - 0 ID=cds-WP_011408738.1;Parent=gene-LLC55_RS14475;Dbxref=Genbank:WP_011408738.1;Name=WP_011408738.1;Ontology_term=GO:0072581;gbkey=CDS;gene=epmB;go_process=protein-N6-(L-lysyl)-L-lysine modification to protein-N6-(beta-lysyl)-L-lysine|0072581||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408738.1;locus_tag=LLC55_RS14475;product=EF-P beta-lysylation protein EpmB;protein_id=WP_011408738.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3092399 3092965 . + . ID=gene-LLC55_RS14480;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=LLC55_RS14480;old_locus_tag=LLC55_14495 NZ_CP086200.1 Protein Homology CDS 3092399 3092965 . + 0 ID=cds-WP_002802373.1;Parent=gene-LLC55_RS14480;Dbxref=Genbank:WP_002802373.1;Name=WP_002802373.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301003.1;locus_tag=LLC55_RS14480;product=elongation factor P;protein_id=WP_002802373.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3093157 3093960 . + . ID=gene-LLC55_RS14485;Name=LLC55_RS14485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14485;old_locus_tag=LLC55_14500 NZ_CP086200.1 Protein Homology CDS 3093157 3093960 . + 0 ID=cds-WP_012444720.1;Parent=gene-LLC55_RS14485;Dbxref=Genbank:WP_012444720.1;Name=WP_012444720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090359.1;locus_tag=LLC55_RS14485;product=hypothetical protein;protein_id=WP_012444720.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3093980 3095317 . + . ID=gene-LLC55_RS14490;Name=LLC55_RS14490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14490;old_locus_tag=LLC55_14505 NZ_CP086200.1 Protein Homology CDS 3093980 3095317 . + 0 ID=cds-WP_027703270.1;Parent=gene-LLC55_RS14490;Dbxref=Genbank:WP_027703270.1;Name=WP_027703270.1;Ontology_term=GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159956.1;locus_tag=LLC55_RS14490;product=TRZ/ATZ family hydrolase;protein_id=WP_027703270.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3095348 3096067 . + . ID=gene-LLC55_RS14495;Name=LLC55_RS14495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14495;old_locus_tag=LLC55_14510 NZ_CP086200.1 Protein Homology CDS 3095348 3096067 . + 0 ID=cds-WP_011259306.1;Parent=gene-LLC55_RS14495;Dbxref=Genbank:WP_011259306.1;Name=WP_011259306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372777.1;locus_tag=LLC55_RS14495;product=bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase;protein_id=WP_011259306.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3096141 3096845 . + . ID=gene-LLC55_RS14500;Name=LLC55_RS14500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14500;old_locus_tag=LLC55_14515 NZ_CP086200.1 Protein Homology CDS 3096141 3096845 . + 0 ID=cds-WP_011408736.1;Parent=gene-LLC55_RS14500;Dbxref=Genbank:WP_011408736.1;Name=WP_011408736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408736.1;locus_tag=LLC55_RS14500;product=phosphoglycolate phosphatase;protein_id=WP_011408736.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3096874 3097563 . + . ID=gene-LLC55_RS14505;Name=LLC55_RS14505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14505;old_locus_tag=LLC55_14520 NZ_CP086200.1 Protein Homology CDS 3096874 3097563 . + 0 ID=cds-WP_011259304.1;Parent=gene-LLC55_RS14505;Dbxref=Genbank:WP_011259304.1;Name=WP_011259304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156122.1;locus_tag=LLC55_RS14505;product=phytoene synthase;protein_id=WP_011259304.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3097780 3099450 . - . ID=gene-LLC55_RS14510;Name=LLC55_RS14510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14510;old_locus_tag=LLC55_14525 NZ_CP086200.1 Protein Homology CDS 3097780 3099450 . - 0 ID=cds-WP_011259303.1;Parent=gene-LLC55_RS14510;Dbxref=Genbank:WP_011259303.1;Name=WP_011259303.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486074.1;locus_tag=LLC55_RS14510;product=glycoside hydrolase family 28 protein;protein_id=WP_011259303.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3099672 3100626 . + . ID=gene-LLC55_RS14515;Name=LLC55_RS14515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14515;old_locus_tag=LLC55_14530;pseudo=true NZ_CP086200.1 Protein Homology CDS 3099672 3100626 . + 0 ID=cds-LLC55_RS14515;Parent=gene-LLC55_RS14515;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182719.1;locus_tag=LLC55_RS14515;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3101039 3102220 . - . ID=gene-LLC55_RS14520;Name=LLC55_RS14520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14520;old_locus_tag=LLC55_14535 NZ_CP086200.1 Protein Homology CDS 3101039 3102220 . - 0 ID=cds-WP_012444725.1;Parent=gene-LLC55_RS14520;Dbxref=Genbank:WP_012444725.1;Name=WP_012444725.1;Ontology_term=GO:0042545,GO:0030599;gbkey=CDS;go_function=pectinesterase activity|0030599||IEA;go_process=cell wall modification|0042545||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573436.1;locus_tag=LLC55_RS14520;product=putative acyl-CoA thioester hydrolase;protein_id=WP_012444725.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3102580 3103896 . - . ID=gene-LLC55_RS14525;Name=LLC55_RS14525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14525;old_locus_tag=LLC55_14540 NZ_CP086200.1 Protein Homology CDS 3102580 3103896 . - 0 ID=cds-WP_069964543.1;Parent=gene-LLC55_RS14525;Dbxref=Genbank:WP_069964543.1;Name=WP_069964543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS14525;product=IS701-like element ISXo15 family transposase;protein_id=WP_069964543.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3104096 3105064 . - . ID=gene-LLC55_RS14530;Name=LLC55_RS14530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14530;old_locus_tag=LLC55_14545 NZ_CP086200.1 Protein Homology CDS 3104096 3105064 . - 0 ID=cds-WP_011257031.1-4;Parent=gene-LLC55_RS14530;Dbxref=Genbank:WP_011257031.1;Name=WP_011257031.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS14530;product=IS5-like element ISXo1 family transposase;protein_id=WP_011257031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3105201 3106520 . + . ID=gene-LLC55_RS14535;Name=LLC55_RS14535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14535;old_locus_tag=LLC55_14550 NZ_CP086200.1 Protein Homology CDS 3105201 3106520 . + 0 ID=cds-WP_011408734.1;Parent=gene-LLC55_RS14535;Dbxref=Genbank:WP_011408734.1;Name=WP_011408734.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS14535;product=IS701-like element ISXo15 family transposase;protein_id=WP_011408734.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3106744 3107232 . + . ID=gene-LLC55_RS14540;Name=LLC55_RS14540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14540;old_locus_tag=LLC55_14555 NZ_CP086200.1 Protein Homology CDS 3106744 3107232 . + 0 ID=cds-WP_012444728.1;Parent=gene-LLC55_RS14540;Dbxref=Genbank:WP_012444728.1;Name=WP_012444728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486918.1;locus_tag=LLC55_RS14540;product=pyridoxamine 5'-phosphate oxidase family protein;protein_id=WP_012444728.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3107604 3107867 . + . ID=gene-LLC55_RS14545;Name=LLC55_RS14545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14545;old_locus_tag=LLC55_14560 NZ_CP086200.1 Protein Homology CDS 3107604 3107867 . + 0 ID=cds-WP_011259294.1;Parent=gene-LLC55_RS14545;Dbxref=Genbank:WP_011259294.1;Name=WP_011259294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156118.1;locus_tag=LLC55_RS14545;product=hypothetical protein;protein_id=WP_011259294.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3107893 3108656 . - . ID=gene-LLC55_RS14550;Name=LLC55_RS14550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14550;old_locus_tag=LLC55_14565 NZ_CP086200.1 Protein Homology CDS 3108341 3108656 . - 0 ID=cds-WP_094187715.1-7;Parent=gene-LLC55_RS14550;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS14550;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3107893 3108341 . - 2 ID=cds-WP_094187715.1-7;Parent=gene-LLC55_RS14550;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS14550;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3108738 3109207 . - . ID=gene-LLC55_RS14555;Name=LLC55_RS14555;end_range=3109207,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14555;old_locus_tag=LLC55_14570;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3108738 3109207 . - 0 ID=cds-LLC55_RS14555;Parent=gene-LLC55_RS14555;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006520,GO:0008851;end_range=3109207,.;gbkey=CDS;go_function=ethanolamine ammonia-lyase activity|0008851||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156117.1;locus_tag=LLC55_RS14555;partial=true;product=ethanolamine ammonia-lyase light chain EutC;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3109555 3110394 . - . ID=gene-LLC55_RS14560;Name=LLC55_RS14560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14560;old_locus_tag=LLC55_14575 NZ_CP086200.1 Protein Homology CDS 3109555 3110394 . - 0 ID=cds-WP_044756777.1;Parent=gene-LLC55_RS14560;Dbxref=Genbank:WP_044756777.1;Name=WP_044756777.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159191.1;locus_tag=LLC55_RS14560;product=M23 family metallopeptidase;protein_id=WP_044756777.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3110394 3111743 . - . ID=gene-LLC55_RS14565;Name=LLC55_RS14565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14565;old_locus_tag=LLC55_14580 NZ_CP086200.1 Protein Homology CDS 3110394 3111743 . - 0 ID=cds-WP_011408728.1;Parent=gene-LLC55_RS14565;Dbxref=Genbank:WP_011408728.1;Name=WP_011408728.1;Ontology_term=GO:0016812;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides|0016812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302579.1;locus_tag=LLC55_RS14565;product=dihydroorotase;protein_id=WP_011408728.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3111740 3112027 . - . ID=gene-LLC55_RS14570;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=LLC55_RS14570;old_locus_tag=LLC55_14585 NZ_CP086200.1 Protein Homology CDS 3111740 3112027 . - 0 ID=cds-WP_011408727.1;Parent=gene-LLC55_RS14570;Dbxref=Genbank:WP_011408727.1;Name=WP_011408727.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347711.1;locus_tag=LLC55_RS14570;product=membrane protein insertion efficiency factor YidD;protein_id=WP_011408727.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3112112 3113152 . + . ID=gene-LLC55_RS14575;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=LLC55_RS14575;old_locus_tag=LLC55_14590 NZ_CP086200.1 Protein Homology CDS 3112112 3113152 . + 0 ID=cds-WP_075242231.1;Parent=gene-LLC55_RS14575;Dbxref=Genbank:WP_075242231.1;Name=WP_075242231.1;Ontology_term=GO:0006355,GO:0019899;gbkey=CDS;gene=dksA;go_function=enzyme binding|0019899||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112367.1;locus_tag=LLC55_RS14575;product=RNA polymerase-binding protein DksA;protein_id=WP_075242231.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3113322 3114356 . + . ID=gene-LLC55_RS14580;Name=LLC55_RS14580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14580;old_locus_tag=LLC55_14595 NZ_CP086200.1 Protein Homology CDS 3113322 3114356 . + 0 ID=cds-WP_228329610.1;Parent=gene-LLC55_RS14580;Dbxref=Genbank:WP_228329610.1;Name=WP_228329610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259288.1;locus_tag=LLC55_RS14580;product=S41 family peptidase;protein_id=WP_228329610.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3114424 3115674 . - . ID=gene-LLC55_RS14585;Name=LLC55_RS14585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14585;old_locus_tag=LLC55_14600 NZ_CP086200.1 Protein Homology CDS 3114424 3115674 . - 0 ID=cds-WP_011259287.1;Parent=gene-LLC55_RS14585;Dbxref=Genbank:WP_011259287.1;Name=WP_011259287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573410.1;locus_tag=LLC55_RS14585;product=MFS transporter;protein_id=WP_011259287.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3115671 3116108 . - . ID=gene-LLC55_RS14590;Name=LLC55_RS14590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14590;old_locus_tag=LLC55_14605 NZ_CP086200.1 Protein Homology CDS 3115671 3116108 . - 0 ID=cds-WP_011408724.1;Parent=gene-LLC55_RS14590;Dbxref=Genbank:WP_011408724.1;Name=WP_011408724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159960.1;locus_tag=LLC55_RS14590;product=SufE family protein;protein_id=WP_011408724.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3116606 3118030 . - . ID=gene-LLC55_RS14595;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=LLC55_RS14595;old_locus_tag=LLC55_14610 NZ_CP086200.1 Protein Homology CDS 3116606 3118030 . - 0 ID=cds-WP_012444736.1;Parent=gene-LLC55_RS14595;Dbxref=Genbank:WP_012444736.1;Name=WP_012444736.1;Ontology_term=GO:0006423,GO:0004817,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444736.1;locus_tag=LLC55_RS14595;product=cysteine--tRNA ligase;protein_id=WP_012444736.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3118207 3118701 . + . ID=gene-LLC55_RS14600;Name=LLC55_RS14600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14600;old_locus_tag=LLC55_14615 NZ_CP086200.1 Protein Homology CDS 3118207 3118701 . + 0 ID=cds-WP_027703614.1;Parent=gene-LLC55_RS14600;Dbxref=Genbank:WP_027703614.1;Name=WP_027703614.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114649.1;locus_tag=LLC55_RS14600;product=hypothetical protein;protein_id=WP_027703614.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3119014 3120039 . + . ID=gene-LLC55_RS14605;Name=LLC55_RS14605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14605;old_locus_tag=LLC55_14620 NZ_CP086200.1 Protein Homology CDS 3119014 3120039 . + 0 ID=cds-WP_011259283.1;Parent=gene-LLC55_RS14605;Dbxref=Genbank:WP_011259283.1;Name=WP_011259283.1;Ontology_term=GO:0042450,GO:0016597,GO:0043857;gbkey=CDS;go_function=amino acid binding|0016597||IEA,N-acetylornithine carbamoyltransferase activity|0043857||IEA;go_process=arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503633.1;locus_tag=LLC55_RS14605;product=N-acetylornithine carbamoyltransferase;protein_id=WP_011259283.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3120111 3121352 . + . ID=gene-LLC55_RS14610;Name=LLC55_RS14610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14610;old_locus_tag=LLC55_14625 NZ_CP086200.1 Protein Homology CDS 3120111 3121352 . + 0 ID=cds-WP_011259282.1;Parent=gene-LLC55_RS14610;Dbxref=Genbank:WP_011259282.1;Name=WP_011259282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300041.1;locus_tag=LLC55_RS14610;product=argininosuccinate synthase;protein_id=WP_011259282.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3121594 3122046 . + . ID=gene-LLC55_RS14615;Name=LLC55_RS14615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14615;old_locus_tag=LLC55_14630 NZ_CP086200.1 Protein Homology CDS 3121594 3122046 . + 0 ID=cds-WP_011408722.1;Parent=gene-LLC55_RS14615;Dbxref=Genbank:WP_011408722.1;Name=WP_011408722.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913114.1;locus_tag=LLC55_RS14615;product=GNAT family N-acetyltransferase;protein_id=WP_011408722.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3122052 3123152 . + . ID=gene-LLC55_RS14620;Name=LLC55_RS14620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14620;old_locus_tag=LLC55_14635 NZ_CP086200.1 Protein Homology CDS 3122052 3123152 . + 0 ID=cds-WP_011259280.1;Parent=gene-LLC55_RS14620;Dbxref=Genbank:WP_011259280.1;Name=WP_011259280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237600.1;locus_tag=LLC55_RS14620;product=acetylornithine deacetylase;protein_id=WP_011259280.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3123192 3124535 . + . ID=gene-LLC55_RS14625;Name=LLC55_RS14625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14625;old_locus_tag=LLC55_14640 NZ_CP086200.1 Protein Homology CDS 3123192 3124535 . + 0 ID=cds-WP_011259279.1;Parent=gene-LLC55_RS14625;Dbxref=Genbank:WP_011259279.1;Name=WP_011259279.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174254.1;locus_tag=LLC55_RS14625;product=acetylglutamate kinase;protein_id=WP_011259279.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3124541 3125151 . + . ID=gene-LLC55_RS14630;Name=LLC55_RS14630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14630;old_locus_tag=LLC55_14645;pseudo=true NZ_CP086200.1 Protein Homology CDS 3124541 3125151 . + 0 ID=cds-LLC55_RS14630;Parent=gene-LLC55_RS14630;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382263.1;locus_tag=LLC55_RS14630;product=GNAT family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3125148 3126098 . + . ID=gene-LLC55_RS14635;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=LLC55_RS14635;old_locus_tag=LLC55_14650 NZ_CP086200.1 Protein Homology CDS 3125148 3126098 . + 0 ID=cds-WP_044756779.1;Parent=gene-LLC55_RS14635;Dbxref=Genbank:WP_044756779.1;Name=WP_044756779.1;Ontology_term=GO:0006592,GO:0003942;gbkey=CDS;gene=argC;go_function=N-acetyl-gamma-glutamyl-phosphate reductase activity|0003942||IEA;go_process=ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157784.1;locus_tag=LLC55_RS14635;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_044756779.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3126222 3127517 . + . ID=gene-LLC55_RS14640;Name=LLC55_RS14640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14640;old_locus_tag=LLC55_14655 NZ_CP086200.1 Protein Homology CDS 3126222 3127517 . + 0 ID=cds-WP_011408717.1;Parent=gene-LLC55_RS14640;Dbxref=Genbank:WP_011408717.1;Name=WP_011408717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116208.1;locus_tag=LLC55_RS14640;product=argininosuccinate lyase;protein_id=WP_011408717.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3127517 3127882 . + . ID=gene-LLC55_RS14645;Name=LLC55_RS14645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14645;old_locus_tag=LLC55_14660 NZ_CP086200.1 Protein Homology CDS 3127517 3127882 . + 0 ID=cds-WP_011408716.1;Parent=gene-LLC55_RS14645;Dbxref=Genbank:WP_011408716.1;Name=WP_011408716.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408716.1;locus_tag=LLC55_RS14645;product=cupin domain-containing protein;protein_id=WP_011408716.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3127882 3128142 . + . ID=gene-LLC55_RS14650;Name=LLC55_RS14650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14650;old_locus_tag=LLC55_14665 NZ_CP086200.1 Protein Homology CDS 3127882 3128142 . + 0 ID=cds-WP_011259275.1;Parent=gene-LLC55_RS14650;Dbxref=Genbank:WP_011259275.1;Name=WP_011259275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347701.1;locus_tag=LLC55_RS14650;product=YciI family protein;protein_id=WP_011259275.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3128156 3129310 . + . ID=gene-LLC55_RS14655;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=LLC55_RS14655;old_locus_tag=LLC55_14670 NZ_CP086200.1 Protein Homology CDS 3128156 3129310 . + 0 ID=cds-WP_011408715.1;Parent=gene-LLC55_RS14655;Dbxref=Genbank:WP_011408715.1;Name=WP_011408715.1;Ontology_term=GO:0006561,GO:0004349;gbkey=CDS;gene=proB;go_function=glutamate 5-kinase activity|0004349||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167565.1;locus_tag=LLC55_RS14655;product=glutamate 5-kinase;protein_id=WP_011408715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3129552 3130796 . + . ID=gene-LLC55_RS14660;Name=LLC55_RS14660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14660;old_locus_tag=LLC55_14675 NZ_CP086200.1 Protein Homology CDS 3129552 3130796 . + 0 ID=cds-WP_011408714.1;Parent=gene-LLC55_RS14660;Dbxref=Genbank:WP_011408714.1;Name=WP_011408714.1;Ontology_term=GO:0006561,GO:0004350,GO:0016620;gbkey=CDS;go_function=glutamate-5-semialdehyde dehydrogenase activity|0004350||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972357.1;locus_tag=LLC55_RS14660;product=glutamate-5-semialdehyde dehydrogenase;protein_id=WP_011408714.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3131164 3133077 . + . ID=gene-LLC55_RS14665;Name=LLC55_RS14665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14665;old_locus_tag=LLC55_14680 NZ_CP086200.1 Protein Homology CDS 3131164 3133077 . + 0 ID=cds-WP_044756781.1;Parent=gene-LLC55_RS14665;Dbxref=Genbank:WP_044756781.1;Name=WP_044756781.1;Ontology_term=GO:0008152,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259272.1;locus_tag=LLC55_RS14665;product=CocE/NonD family hydrolase;protein_id=WP_044756781.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3133058 3134284 . - . ID=gene-LLC55_RS14670;Name=LLC55_RS14670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14670;old_locus_tag=LLC55_14685 NZ_CP086200.1 Protein Homology CDS 3133058 3134284 . - 0 ID=cds-WP_027703616.1;Parent=gene-LLC55_RS14670;Dbxref=Genbank:WP_027703616.1;Name=WP_027703616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157790.1;locus_tag=LLC55_RS14670;product=MFS transporter;protein_id=WP_027703616.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3134408 3134484 . - . ID=gene-LLC55_RS14675;Name=LLC55_RS14675;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS14675;old_locus_tag=LLC55_14690 NZ_CP086200.1 tRNAscan-SE tRNA 3134408 3134484 . - . ID=rna-LLC55_RS14675;Parent=gene-LLC55_RS14675;anticodon=(pos:complement(3134448..3134450));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14675;product=tRNA-Pro NZ_CP086200.1 tRNAscan-SE exon 3134408 3134484 . - . ID=exon-LLC55_RS14675-1;Parent=rna-LLC55_RS14675;anticodon=(pos:complement(3134448..3134450));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14675;product=tRNA-Pro NZ_CP086200.1 RefSeq gene 3134544 3134654 . - . ID=gene-LLC55_RS14680;Name=cydX;gbkey=Gene;gene=cydX;gene_biotype=protein_coding;locus_tag=LLC55_RS14680;old_locus_tag=LLC55_14695 NZ_CP086200.1 Protein Homology CDS 3134544 3134654 . - 0 ID=cds-WP_011259269.1;Parent=gene-LLC55_RS14680;Dbxref=Genbank:WP_011259269.1;Name=WP_011259269.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydX;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573380.1;locus_tag=LLC55_RS14680;product=cytochrome bd-I oxidase subunit CydX;protein_id=WP_011259269.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3134654 3134984 . - . ID=gene-LLC55_RS14685;Name=LLC55_RS14685;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14685;old_locus_tag=LLC55_14700;partial=true;pseudo=true;start_range=.,3134654 NZ_CP086200.1 Protein Homology CDS 3134654 3134984 . - 0 ID=cds-LLC55_RS14685;Parent=gene-LLC55_RS14685;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347694.1;locus_tag=LLC55_RS14685;partial=true;product=cytochrome d ubiquinol oxidase subunit II;pseudo=true;start_range=.,3134654;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3135001 3136445 . - . ID=gene-LLC55_RS14690;Name=LLC55_RS14690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14690;old_locus_tag=LLC55_14705;pseudo=true NZ_CP086200.1 Protein Homology CDS 3135001 3136445 . - 0 ID=cds-LLC55_RS14690;Parent=gene-LLC55_RS14690;Note=frameshifted%3B internal stop;Ontology_term=GO:0019646,GO:0009055,GO:0070069;gbkey=CDS;go_component=cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA;go_process=aerobic electron transport chain|0019646||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163785.1;locus_tag=LLC55_RS14690;product=cytochrome ubiquinol oxidase subunit I;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3136597 3138333 . + . ID=gene-LLC55_RS14695;Name=cydD;gbkey=Gene;gene=cydD;gene_biotype=protein_coding;locus_tag=LLC55_RS14695;old_locus_tag=LLC55_14710 NZ_CP086200.1 Protein Homology CDS 3136597 3138333 . + 0 ID=cds-WP_075239845.1;Parent=gene-LLC55_RS14695;Dbxref=Genbank:WP_075239845.1;Name=WP_075239845.1;Ontology_term=GO:0033228,GO:0005524,GO:0033230,GO:0005886,GO:0055051;gbkey=CDS;gene=cydD;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C integrated substrate binding|0055051||IEA;go_function=ATP binding|0005524||IEA,ABC-type cysteine transporter activity|0033230||IEA;go_process=cysteine export across plasma membrane|0033228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160357.1;locus_tag=LLC55_RS14695;product=thiol reductant ABC exporter subunit CydD;protein_id=WP_075239845.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3138330 3140015 . + . ID=gene-LLC55_RS14700;Name=cydC;gbkey=Gene;gene=cydC;gene_biotype=protein_coding;locus_tag=LLC55_RS14700;old_locus_tag=LLC55_14715 NZ_CP086200.1 Protein Homology CDS 3138330 3140015 . + 0 ID=cds-WP_011408708.1;Parent=gene-LLC55_RS14700;Dbxref=Genbank:WP_011408708.1;Name=WP_011408708.1;Ontology_term=GO:0033228,GO:0005524,GO:0033230,GO:0005886,GO:0055051;gbkey=CDS;gene=cydC;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C integrated substrate binding|0055051||IEA;go_function=ATP binding|0005524||IEA,ABC-type cysteine transporter activity|0033230||IEA;go_process=cysteine export across plasma membrane|0033228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347691.1;locus_tag=LLC55_RS14700;product=thiol reductant ABC exporter subunit CydC;protein_id=WP_011408708.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3140184 3141482 . - . ID=gene-LLC55_RS14705;Name=LLC55_RS14705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14705;old_locus_tag=LLC55_14720 NZ_CP086200.1 Protein Homology CDS 3140184 3141482 . - 0 ID=cds-WP_011408707.1;Parent=gene-LLC55_RS14705;Dbxref=Genbank:WP_011408707.1;Name=WP_011408707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444745.1;locus_tag=LLC55_RS14705;product=IS701-like element ISXo15 family transposase;protein_id=WP_011408707.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3141489 3142454 . - . ID=gene-LLC55_RS14710;Name=LLC55_RS14710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14710;old_locus_tag=LLC55_14725 NZ_CP086200.1 Protein Homology CDS 3141489 3142454 . - 0 ID=cds-WP_228329611.1;Parent=gene-LLC55_RS14710;Dbxref=Genbank:WP_228329611.1;Name=WP_228329611.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS14710;product=IS1595-like element ISXo5 family transposase;protein_id=WP_228329611.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3143247 3143423 . + . ID=gene-LLC55_RS14715;Name=LLC55_RS14715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14715;old_locus_tag=LLC55_14730 NZ_CP086200.1 Protein Homology CDS 3143247 3143423 . + 0 ID=cds-WP_011408705.1;Parent=gene-LLC55_RS14715;Dbxref=Genbank:WP_011408705.1;Name=WP_011408705.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302881.1;locus_tag=LLC55_RS14715;product=hypothetical protein;protein_id=WP_011408705.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3143728 3143803 . - . ID=gene-LLC55_RS14720;Name=LLC55_RS14720;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS14720;old_locus_tag=LLC55_14735 NZ_CP086200.1 tRNAscan-SE tRNA 3143728 3143803 . - . ID=rna-LLC55_RS14720;Parent=gene-LLC55_RS14720;anticodon=(pos:complement(3143767..3143769));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14720;product=tRNA-Glu NZ_CP086200.1 tRNAscan-SE exon 3143728 3143803 . - . ID=exon-LLC55_RS14720-1;Parent=rna-LLC55_RS14720;anticodon=(pos:complement(3143767..3143769));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14720;product=tRNA-Glu NZ_CP086200.1 RefSeq gene 3143851 3143926 . - . ID=gene-LLC55_RS14725;Name=LLC55_RS14725;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS14725;old_locus_tag=LLC55_14740 NZ_CP086200.1 tRNAscan-SE tRNA 3143851 3143926 . - . ID=rna-LLC55_RS14725;Parent=gene-LLC55_RS14725;anticodon=(pos:complement(3143891..3143893));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14725;product=tRNA-Ala NZ_CP086200.1 tRNAscan-SE exon 3143851 3143926 . - . ID=exon-LLC55_RS14725-1;Parent=rna-LLC55_RS14725;anticodon=(pos:complement(3143891..3143893));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14725;product=tRNA-Ala NZ_CP086200.1 RefSeq gene 3144158 3144556 . - . ID=gene-LLC55_RS14730;Name=LLC55_RS14730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14730;old_locus_tag=LLC55_14745 NZ_CP086200.1 GeneMarkS-2+ CDS 3144158 3144556 . - 0 ID=cds-WP_153296779.1;Parent=gene-LLC55_RS14730;Dbxref=Genbank:WP_153296779.1;Name=WP_153296779.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS14730;product=hypothetical protein;protein_id=WP_153296779.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3144686 3144761 . - . ID=gene-LLC55_RS14735;Name=LLC55_RS14735;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS14735;old_locus_tag=LLC55_14750 NZ_CP086200.1 tRNAscan-SE tRNA 3144686 3144761 . - . ID=rna-LLC55_RS14735;Parent=gene-LLC55_RS14735;anticodon=(pos:complement(3144725..3144727));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14735;product=tRNA-Glu NZ_CP086200.1 tRNAscan-SE exon 3144686 3144761 . - . ID=exon-LLC55_RS14735-1;Parent=rna-LLC55_RS14735;anticodon=(pos:complement(3144725..3144727));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14735;product=tRNA-Glu NZ_CP086200.1 RefSeq gene 3144809 3144884 . - . ID=gene-LLC55_RS14740;Name=LLC55_RS14740;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS14740;old_locus_tag=LLC55_14755 NZ_CP086200.1 tRNAscan-SE tRNA 3144809 3144884 . - . ID=rna-LLC55_RS14740;Parent=gene-LLC55_RS14740;anticodon=(pos:complement(3144849..3144851));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14740;product=tRNA-Ala NZ_CP086200.1 tRNAscan-SE exon 3144809 3144884 . - . ID=exon-LLC55_RS14740-1;Parent=rna-LLC55_RS14740;anticodon=(pos:complement(3144849..3144851));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS14740;product=tRNA-Ala NZ_CP086200.1 RefSeq gene 3144977 3145438 . - . ID=gene-LLC55_RS14745;Name=LLC55_RS14745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14745;old_locus_tag=LLC55_14760 NZ_CP086200.1 Protein Homology CDS 3144977 3145438 . - 0 ID=cds-WP_011259261.1;Parent=gene-LLC55_RS14745;Dbxref=Genbank:WP_011259261.1;Name=WP_011259261.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995424.1;locus_tag=LLC55_RS14745;product=cytochrome c;protein_id=WP_011259261.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3145447 3145839 . - . ID=gene-LLC55_RS14750;Name=LLC55_RS14750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14750;old_locus_tag=LLC55_14765 NZ_CP086200.1 Protein Homology CDS 3145447 3145839 . - 0 ID=cds-WP_011259260.1;Parent=gene-LLC55_RS14750;Dbxref=Genbank:WP_011259260.1;Name=WP_011259260.1;Ontology_term=GO:0009055,GO:0020037;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051309.1;locus_tag=LLC55_RS14750;product=c-type cytochrome;protein_id=WP_011259260.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3146044 3147177 . + . ID=gene-LLC55_RS14755;Name=LLC55_RS14755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14755;old_locus_tag=LLC55_14770;pseudo=true NZ_CP086200.1 Protein Homology CDS 3146044 3147177 . + 0 ID=cds-LLC55_RS14755;Parent=gene-LLC55_RS14755;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090235.1;locus_tag=LLC55_RS14755;product=efflux RND transporter periplasmic adaptor subunit;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3147174 3150699 . + . ID=gene-LLC55_RS14760;Name=LLC55_RS14760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14760;old_locus_tag=LLC55_14775;pseudo=true NZ_CP086200.1 Protein Homology CDS 3147174 3150699 . + 0 ID=cds-LLC55_RS14760;Parent=gene-LLC55_RS14760;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482800.1;locus_tag=LLC55_RS14760;product=efflux RND transporter permease subunit;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3150696 3153764 . + . ID=gene-LLC55_RS14765;Name=LLC55_RS14765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14765;old_locus_tag=LLC55_14780;pseudo=true NZ_CP086200.1 Protein Homology CDS 3150696 3153764 . + 0 ID=cds-LLC55_RS14765;Parent=gene-LLC55_RS14765;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503513.1;locus_tag=LLC55_RS14765;product=efflux RND transporter permease subunit;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3153973 3154452 . + . ID=gene-LLC55_RS14770;Name=LLC55_RS14770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14770;old_locus_tag=LLC55_14785 NZ_CP086200.1 GeneMarkS-2+ CDS 3153973 3154452 . + 0 ID=cds-WP_128415342.1;Parent=gene-LLC55_RS14770;Dbxref=Genbank:WP_128415342.1;Name=WP_128415342.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS14770;product=hypothetical protein;protein_id=WP_128415342.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3154559 3155877 . - . ID=gene-LLC55_RS14775;Name=LLC55_RS14775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14775;old_locus_tag=LLC55_14790;pseudo=true NZ_CP086200.1 Protein Homology CDS 3154559 3155877 . - 0 ID=cds-LLC55_RS14775;Parent=gene-LLC55_RS14775;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS14775;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3156077 3157045 . - . ID=gene-LLC55_RS14780;Name=LLC55_RS14780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14780;old_locus_tag=LLC55_14795 NZ_CP086200.1 Protein Homology CDS 3156077 3157045 . - 0 ID=cds-WP_011257031.1-5;Parent=gene-LLC55_RS14780;Dbxref=Genbank:WP_011257031.1;Name=WP_011257031.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS14780;product=IS5-like element ISXo1 family transposase;protein_id=WP_011257031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3157134 3159098 . + . ID=gene-LLC55_RS14785;Name=LLC55_RS14785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14785;old_locus_tag=LLC55_14800 NZ_CP086200.1 GeneMarkS-2+ CDS 3157134 3159098 . + 0 ID=cds-WP_069960219.1;Parent=gene-LLC55_RS14785;Dbxref=Genbank:WP_069960219.1;Name=WP_069960219.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS14785;product=hypothetical protein;protein_id=WP_069960219.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3159109 3160077 . + . ID=gene-LLC55_RS14790;Name=LLC55_RS14790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14790;old_locus_tag=LLC55_14805 NZ_CP086200.1 Protein Homology CDS 3159109 3160077 . + 0 ID=cds-WP_011258802.1-12;Parent=gene-LLC55_RS14790;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS14790;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3160229 3160978 . + . ID=gene-LLC55_RS14795;Name=LLC55_RS14795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14795;old_locus_tag=LLC55_14810 NZ_CP086200.1 GeneMarkS-2+ CDS 3160229 3160978 . + 0 ID=cds-WP_011259257.1;Parent=gene-LLC55_RS14795;Dbxref=Genbank:WP_011259257.1;Name=WP_011259257.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS14795;product=hypothetical protein;protein_id=WP_011259257.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3161008 3166248 . + . ID=gene-LLC55_RS14800;Name=LLC55_RS14800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14800;old_locus_tag=LLC55_14815 NZ_CP086200.1 Protein Homology CDS 3161008 3166248 . + 0 ID=cds-WP_075242299.1;Parent=gene-LLC55_RS14800;Dbxref=Genbank:WP_075242299.1;Name=WP_075242299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259256.1;locus_tag=LLC55_RS14800;product=DUF6531 domain-containing protein;protein_id=WP_075242299.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3166287 3166817 . + . ID=gene-LLC55_RS14805;Name=LLC55_RS14805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14805;old_locus_tag=LLC55_14820 NZ_CP086200.1 Protein Homology CDS 3166287 3166817 . + 0 ID=cds-WP_075242300.1;Parent=gene-LLC55_RS14805;Dbxref=Genbank:WP_075242300.1;Name=WP_075242300.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024287.2;locus_tag=LLC55_RS14805;product=DUF3828 domain-containing protein;protein_id=WP_075242300.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3166912 3167880 . - . ID=gene-LLC55_RS14810;Name=LLC55_RS14810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14810;old_locus_tag=LLC55_14825 NZ_CP086200.1 Protein Homology CDS 3166912 3167880 . - 0 ID=cds-WP_011407175.1-2;Parent=gene-LLC55_RS14810;Dbxref=Genbank:WP_011407175.1;Name=WP_011407175.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS14810;product=IS5-like element ISXo1 family transposase;protein_id=WP_011407175.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3168030 3169349 . - . ID=gene-LLC55_RS14815;Name=LLC55_RS14815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14815;old_locus_tag=LLC55_14830 NZ_CP086200.1 Protein Homology CDS 3168030 3169349 . - 0 ID=cds-WP_115801909.1;Parent=gene-LLC55_RS14815;Dbxref=Genbank:WP_115801909.1;Name=WP_115801909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS14815;product=IS701-like element ISXo15 family transposase;protein_id=WP_115801909.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3169507 3170821 . - . ID=gene-LLC55_RS14820;Name=LLC55_RS14820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14820;old_locus_tag=LLC55_14835;pseudo=true NZ_CP086200.1 Protein Homology CDS 3169507 3170821 . - 0 ID=cds-LLC55_RS14820;Parent=gene-LLC55_RS14820;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS14820;product=IS701 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3171288 3171671 . + . ID=gene-LLC55_RS14825;Name=LLC55_RS14825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14825;old_locus_tag=LLC55_14840 NZ_CP086200.1 GeneMarkS-2+ CDS 3171288 3171671 . + 0 ID=cds-WP_125168755.1;Parent=gene-LLC55_RS14825;Dbxref=Genbank:WP_125168755.1;Name=WP_125168755.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS14825;product=hypothetical protein;protein_id=WP_125168755.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3171770 3172786 . - . ID=gene-LLC55_RS14830;Name=LLC55_RS14830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14830;old_locus_tag=LLC55_14845;pseudo=true NZ_CP086200.1 Protein Homology CDS 3171770 3172786 . - 0 ID=cds-LLC55_RS14830;Parent=gene-LLC55_RS14830;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS14830;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3172835 3173014 . - . ID=gene-LLC55_RS14835;Name=LLC55_RS14835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS14835;old_locus_tag=LLC55_14850;partial=true;pseudo=true;start_range=.,3172835 NZ_CP086200.1 Protein Homology CDS 3172835 3173014 . - 0 ID=cds-LLC55_RS14835;Parent=gene-LLC55_RS14835;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502405.1;locus_tag=LLC55_RS14835;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,3172835;transl_table=11 NZ_CP086200.1 RefSeq gene 3173203 3174861 . - . ID=gene-LLC55_RS14840;Name=LLC55_RS14840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14840;old_locus_tag=LLC55_14855 NZ_CP086200.1 Protein Homology CDS 3173203 3174861 . - 0 ID=cds-WP_011259250.1;Parent=gene-LLC55_RS14840;Dbxref=Genbank:WP_011259250.1;Name=WP_011259250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304939.1;locus_tag=LLC55_RS14840;product=chemotaxis protein CheA;protein_id=WP_011259250.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3174864 3175490 . - . ID=gene-LLC55_RS14845;Name=LLC55_RS14845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14845;old_locus_tag=LLC55_14860 NZ_CP086200.1 Protein Homology CDS 3174864 3175490 . - 0 ID=cds-WP_011259249.1;Parent=gene-LLC55_RS14845;Dbxref=Genbank:WP_011259249.1;Name=WP_011259249.1;Ontology_term=GO:0050920,GO:0003824,GO:0009288;gbkey=CDS;go_component=bacterial-type flagellum|0009288||IEA;go_function=catalytic activity|0003824||IEA;go_process=regulation of chemotaxis|0050920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302999.1;locus_tag=LLC55_RS14845;product=protein phosphatase CheZ;protein_id=WP_011259249.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3175490 3175882 . - . ID=gene-LLC55_RS14850;Name=cheY;gbkey=Gene;gene=cheY;gene_biotype=protein_coding;locus_tag=LLC55_RS14850;old_locus_tag=LLC55_14865 NZ_CP086200.1 Protein Homology CDS 3175490 3175882 . - 0 ID=cds-WP_002813536.1;Parent=gene-LLC55_RS14850;Dbxref=Genbank:WP_002813536.1;Name=WP_002813536.1;Ontology_term=GO:0000160;gbkey=CDS;gene=cheY;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507662.1;locus_tag=LLC55_RS14850;product=chemotaxis response regulator CheY;protein_id=WP_002813536.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3175917 3176672 . - . ID=gene-LLC55_RS14855;Name=LLC55_RS14855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14855;old_locus_tag=LLC55_14870 NZ_CP086200.1 Protein Homology CDS 3175917 3176672 . - 0 ID=cds-WP_011259248.1;Parent=gene-LLC55_RS14855;Dbxref=Genbank:WP_011259248.1;Name=WP_011259248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259248.1;locus_tag=LLC55_RS14855;product=RNA polymerase sigma factor FliA;protein_id=WP_011259248.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3176669 3177553 . - . ID=gene-LLC55_RS14860;Name=LLC55_RS14860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14860;old_locus_tag=LLC55_14875 NZ_CP086200.1 Protein Homology CDS 3176669 3177553 . - 0 ID=cds-WP_005918202.1;Parent=gene-LLC55_RS14860;Dbxref=Genbank:WP_005918202.1;Name=WP_005918202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374294.1;locus_tag=LLC55_RS14860;product=MinD/ParA family protein;protein_id=WP_005918202.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3177540 3179198 . - . ID=gene-LLC55_RS14865;Name=flhF;gbkey=Gene;gene=flhF;gene_biotype=protein_coding;locus_tag=LLC55_RS14865;old_locus_tag=LLC55_14880 NZ_CP086200.1 Protein Homology CDS 3177540 3179198 . - 0 ID=cds-WP_011259247.1;Parent=gene-LLC55_RS14865;Dbxref=Genbank:WP_011259247.1;Name=WP_011259247.1;Ontology_term=GO:0006614,GO:0044781,GO:0003924,GO:0005525;gbkey=CDS;gene=flhF;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=SRP-dependent cotranslational protein targeting to membrane|0006614||IEA,bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154801.1;locus_tag=LLC55_RS14865;product=flagellar biosynthesis protein FlhF;protein_id=WP_011259247.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3179783 3181855 . - . ID=gene-LLC55_RS14870;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=LLC55_RS14870;old_locus_tag=LLC55_14885 NZ_CP086200.1 Protein Homology CDS 3179783 3181855 . - 0 ID=cds-WP_027703548.1;Parent=gene-LLC55_RS14870;Dbxref=Genbank:WP_027703548.1;Name=WP_027703548.1;Ontology_term=GO:0001539,GO:0009288;gbkey=CDS;gene=flhA;go_component=bacterial-type flagellum|0009288||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945277.1;locus_tag=LLC55_RS14870;product=flagellar biosynthesis protein FlhA;protein_id=WP_027703548.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3181873 3183003 . - . ID=gene-LLC55_RS14875;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=LLC55_RS14875;old_locus_tag=LLC55_14890 NZ_CP086200.1 Protein Homology CDS 3181873 3183003 . - 0 ID=cds-WP_011259245.1;Parent=gene-LLC55_RS14875;Dbxref=Genbank:WP_011259245.1;Name=WP_011259245.1;Ontology_term=GO:0001539;gbkey=CDS;gene=flhB;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921357.1;locus_tag=LLC55_RS14875;product=flagellar biosynthesis protein FlhB;protein_id=WP_011259245.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3183247 3185343 . - . ID=gene-LLC55_RS14880;Name=LLC55_RS14880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14880;old_locus_tag=LLC55_14895 NZ_CP086200.1 Protein Homology CDS 3183247 3185343 . - 0 ID=cds-WP_027703547.1;Parent=gene-LLC55_RS14880;Dbxref=Genbank:WP_027703547.1;Name=WP_027703547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408691.1;locus_tag=LLC55_RS14880;product=EAL domain-containing protein;protein_id=WP_027703547.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3185594 3188515 . - . ID=gene-LLC55_RS14885;Name=LLC55_RS14885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14885;old_locus_tag=LLC55_14900 NZ_CP086200.1 Protein Homology CDS 3185594 3188515 . - 0 ID=cds-WP_011259243.1;Parent=gene-LLC55_RS14885;Dbxref=Genbank:WP_011259243.1;Name=WP_011259243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090104.1;locus_tag=LLC55_RS14885;product=ligand-binding sensor domain-containing diguanylate cyclase;protein_id=WP_011259243.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3188874 3191846 . - . ID=gene-LLC55_RS14890;Name=LLC55_RS14890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14890;old_locus_tag=LLC55_14905 NZ_CP086200.1 Protein Homology CDS 3188874 3191846 . - 0 ID=cds-WP_011259242.1;Parent=gene-LLC55_RS14890;Dbxref=Genbank:WP_011259242.1;Name=WP_011259242.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259242.1;locus_tag=LLC55_RS14890;product=ligand-binding sensor domain-containing diguanylate cyclase;protein_id=WP_011259242.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3191941 3192732 . - . ID=gene-LLC55_RS14895;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=LLC55_RS14895;old_locus_tag=LLC55_14910 NZ_CP086200.1 Protein Homology CDS 3191941 3192732 . - 0 ID=cds-WP_011259241.1;Parent=gene-LLC55_RS14895;Dbxref=Genbank:WP_011259241.1;Name=WP_011259241.1;Ontology_term=GO:0006605,GO:0044780,GO:0016020;gbkey=CDS;gene=fliR;go_component=membrane|0016020||IEA;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160558.1;locus_tag=LLC55_RS14895;product=flagellar biosynthetic protein FliR;protein_id=WP_011259241.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3192745 3193014 . - . ID=gene-LLC55_RS14900;Name=LLC55_RS14900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14900;old_locus_tag=LLC55_14915 NZ_CP086200.1 Protein Homology CDS 3192745 3193014 . - 0 ID=cds-WP_005917968.1;Parent=gene-LLC55_RS14900;Dbxref=Genbank:WP_005917968.1;Name=WP_005917968.1;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037081.1;locus_tag=LLC55_RS14900;product=flagellar biosynthetic protein FliQ;protein_id=WP_005917968.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3193433 3194278 . - . ID=gene-LLC55_RS14905;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=LLC55_RS14905;old_locus_tag=LLC55_14920 NZ_CP086200.1 Protein Homology CDS 3193433 3194278 . - 0 ID=cds-WP_011259240.1;Parent=gene-LLC55_RS14905;Dbxref=Genbank:WP_011259240.1;Name=WP_011259240.1;Note=The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly.;Ontology_term=GO:0001539;gbkey=CDS;gene=fliP;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373751.1;locus_tag=LLC55_RS14905;product=flagellar type III secretion system pore protein FliP;protein_id=WP_011259240.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3194280 3194687 . - . ID=gene-LLC55_RS14910;Name=fliO;gbkey=Gene;gene=fliO;gene_biotype=protein_coding;locus_tag=LLC55_RS14910;old_locus_tag=LLC55_14925 NZ_CP086200.1 Protein Homology CDS 3194280 3194687 . - 0 ID=cds-WP_027703545.1;Parent=gene-LLC55_RS14910;Dbxref=Genbank:WP_027703545.1;Name=WP_027703545.1;Ontology_term=GO:0044781;gbkey=CDS;gene=fliO;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158024.1;locus_tag=LLC55_RS14910;product=flagellar biosynthetic protein FliO;protein_id=WP_027703545.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3194693 3195031 . - . ID=gene-LLC55_RS14915;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=LLC55_RS14915;old_locus_tag=LLC55_14930 NZ_CP086200.1 Protein Homology CDS 3194693 3195031 . - 0 ID=cds-WP_011259238.1;Parent=gene-LLC55_RS14915;Dbxref=Genbank:WP_011259238.1;Name=WP_011259238.1;Ontology_term=GO:0001539,GO:0003774,GO:0009288;gbkey=CDS;gene=fliN;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507674.1;locus_tag=LLC55_RS14915;product=flagellar motor switch protein FliN;protein_id=WP_011259238.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3195028 3196041 . - . ID=gene-LLC55_RS14920;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=LLC55_RS14920;old_locus_tag=LLC55_14935 NZ_CP086200.1 Protein Homology CDS 3195028 3196041 . - 0 ID=cds-WP_011259237.1;Parent=gene-LLC55_RS14920;Dbxref=Genbank:WP_011259237.1;Name=WP_011259237.1;Ontology_term=GO:0001539,GO:0009288;gbkey=CDS;gene=fliM;go_component=bacterial-type flagellum|0009288||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302238.1;locus_tag=LLC55_RS14920;product=flagellar motor switch protein FliM;protein_id=WP_011259237.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3196052 3196576 . - . ID=gene-LLC55_RS14925;Name=LLC55_RS14925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14925;old_locus_tag=LLC55_14940 NZ_CP086200.1 Protein Homology CDS 3196052 3196576 . - 0 ID=cds-WP_011259236.1;Parent=gene-LLC55_RS14925;Dbxref=Genbank:WP_011259236.1;Name=WP_011259236.1;Ontology_term=GO:0006935,GO:0071973,GO:0009425;gbkey=CDS;go_component=bacterial-type flagellum basal body|0009425||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917978.1;locus_tag=LLC55_RS14925;product=flagellar basal body-associated FliL family protein;protein_id=WP_011259236.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3196768 3198042 . - . ID=gene-LLC55_RS14930;Name=LLC55_RS14930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14930;old_locus_tag=LLC55_14945 NZ_CP086200.1 Protein Homology CDS 3196768 3198042 . - 0 ID=cds-WP_011408688.1;Parent=gene-LLC55_RS14930;Dbxref=Genbank:WP_011408688.1;Name=WP_011408688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159589.1;locus_tag=LLC55_RS14930;product=flagellar hook-length control protein FliK;protein_id=WP_011408688.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3198039 3198494 . - . ID=gene-LLC55_RS14935;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=LLC55_RS14935;old_locus_tag=LLC55_14950 NZ_CP086200.1 Protein Homology CDS 3198039 3198494 . - 0 ID=cds-WP_011259234.1;Parent=gene-LLC55_RS14935;Dbxref=Genbank:WP_011259234.1;Name=WP_011259234.1;Ontology_term=GO:0006935,GO:0071973,GO:0003774,GO:0009288,GO:0016020;gbkey=CDS;gene=fliJ;go_component=bacterial-type flagellum|0009288||IEA,membrane|0016020||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158028.1;locus_tag=LLC55_RS14935;product=flagellar export protein FliJ;protein_id=WP_011259234.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3198498 3199874 . - . ID=gene-LLC55_RS14940;Name=LLC55_RS14940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14940;old_locus_tag=LLC55_14955 NZ_CP086200.1 Protein Homology CDS 3198498 3199874 . - 0 ID=cds-WP_011259233.1;Parent=gene-LLC55_RS14940;Dbxref=Genbank:WP_011259233.1;Name=WP_011259233.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904676.1;locus_tag=LLC55_RS14940;product=FliI/YscN family ATPase;protein_id=WP_011259233.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3199871 3200491 . - . ID=gene-LLC55_RS14945;Name=LLC55_RS14945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14945;old_locus_tag=LLC55_14960 NZ_CP086200.1 Protein Homology CDS 3199871 3200491 . - 0 ID=cds-WP_011408687.1;Parent=gene-LLC55_RS14945;Dbxref=Genbank:WP_011408687.1;Name=WP_011408687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850279.1;locus_tag=LLC55_RS14945;product=FliH/SctL family protein;protein_id=WP_011408687.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3200488 3201477 . - . ID=gene-LLC55_RS14950;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=LLC55_RS14950;old_locus_tag=LLC55_14965 NZ_CP086200.1 Protein Homology CDS 3200488 3201477 . - 0 ID=cds-WP_011408686.1;Parent=gene-LLC55_RS14950;Dbxref=Genbank:WP_011408686.1;Name=WP_011408686.1;Ontology_term=GO:0001539,GO:0006935,GO:0005198,GO:0009433;gbkey=CDS;gene=fliG;go_component=bacterial-type flagellum basal body%2C C ring|0009433||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA,chemotaxis|0006935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158030.1;locus_tag=LLC55_RS14950;product=flagellar motor switch protein FliG;protein_id=WP_011408686.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3201488 3203212 . - . ID=gene-LLC55_RS14955;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=LLC55_RS14955;old_locus_tag=LLC55_14970 NZ_CP086200.1 Protein Homology CDS 3201488 3203212 . - 0 ID=cds-WP_011259230.1;Parent=gene-LLC55_RS14955;Dbxref=Genbank:WP_011259230.1;Name=WP_011259230.1;Ontology_term=GO:0001539,GO:0005198,GO:0009431;gbkey=CDS;gene=fliF;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158031.1;locus_tag=LLC55_RS14955;product=flagellar basal-body MS-ring/collar protein FliF;protein_id=WP_011259230.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3203226 3203597 . - . ID=gene-LLC55_RS14960;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=LLC55_RS14960;old_locus_tag=LLC55_14975 NZ_CP086200.1 Protein Homology CDS 3203226 3203597 . - 0 ID=cds-WP_012445073.1;Parent=gene-LLC55_RS14960;Dbxref=Genbank:WP_012445073.1;Name=WP_012445073.1;Ontology_term=GO:0001539,GO:0005198;gbkey=CDS;gene=fliE;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997134.1;locus_tag=LLC55_RS14960;product=flagellar hook-basal body complex protein FliE;protein_id=WP_012445073.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3204481 3207978 . - . ID=gene-LLC55_RS14965;Name=LLC55_RS14965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14965;old_locus_tag=LLC55_14980 NZ_CP086200.1 Protein Homology CDS 3204481 3207978 . - 0 ID=cds-WP_173340386.1;Parent=gene-LLC55_RS14965;Dbxref=Genbank:WP_173340386.1;Name=WP_173340386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158033.1;locus_tag=LLC55_RS14965;product=glycosyltransferase;protein_id=WP_173340386.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3208141 3209664 . - . ID=gene-LLC55_RS14970;Name=LLC55_RS14970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14970;old_locus_tag=LLC55_14985 NZ_CP086200.1 Protein Homology CDS 3208141 3209664 . - 0 ID=cds-WP_041182149.1;Parent=gene-LLC55_RS14970;Dbxref=Genbank:WP_041182149.1;Name=WP_041182149.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118762.1;locus_tag=LLC55_RS14970;product=FkbM family methyltransferase;protein_id=WP_041182149.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3209661 3210284 . - . ID=gene-LLC55_RS14975;Name=LLC55_RS14975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14975;old_locus_tag=LLC55_14990 NZ_CP086200.1 Protein Homology CDS 3209661 3210284 . - 0 ID=cds-WP_011259226.1;Parent=gene-LLC55_RS14975;Dbxref=Genbank:WP_011259226.1;Name=WP_011259226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259226.1;locus_tag=LLC55_RS14975;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_011259226.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3210274 3211419 . - . ID=gene-LLC55_RS14980;Name=LLC55_RS14980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14980;old_locus_tag=LLC55_14995 NZ_CP086200.1 Protein Homology CDS 3210274 3211419 . - 0 ID=cds-WP_011259225.1;Parent=gene-LLC55_RS14980;Dbxref=Genbank:WP_011259225.1;Name=WP_011259225.1;Ontology_term=GO:0051537;gbkey=CDS;go_function=2 iron%2C 2 sulfur cluster binding|0051537||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921325.1;locus_tag=LLC55_RS14980;product=Rieske 2Fe-2S domain-containing protein;protein_id=WP_011259225.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3211423 3212073 . - . ID=gene-LLC55_RS14985;Name=LLC55_RS14985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14985;old_locus_tag=LLC55_15000 NZ_CP086200.1 Protein Homology CDS 3211423 3212073 . - 0 ID=cds-WP_011408682.1;Parent=gene-LLC55_RS14985;Dbxref=Genbank:WP_011408682.1;Name=WP_011408682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503303.1;locus_tag=LLC55_RS14985;product=acetyltransferase;protein_id=WP_011408682.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3212073 3212825 . - . ID=gene-LLC55_RS14990;Name=LLC55_RS14990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14990;old_locus_tag=LLC55_15005 NZ_CP086200.1 Protein Homology CDS 3212073 3212825 . - 0 ID=cds-WP_011259224.1;Parent=gene-LLC55_RS14990;Dbxref=Genbank:WP_011259224.1;Name=WP_011259224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302783.1;locus_tag=LLC55_RS14990;product=SDR family oxidoreductase;protein_id=WP_011259224.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3212822 3213595 . - . ID=gene-LLC55_RS14995;Name=LLC55_RS14995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS14995;old_locus_tag=LLC55_15010 NZ_CP086200.1 Protein Homology CDS 3212822 3213595 . - 0 ID=cds-WP_011408681.1;Parent=gene-LLC55_RS14995;Dbxref=Genbank:WP_011408681.1;Name=WP_011408681.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373659.1;locus_tag=LLC55_RS14995;product=SDR family oxidoreductase;protein_id=WP_011408681.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3213592 3214632 . - . ID=gene-LLC55_RS15000;Name=LLC55_RS15000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15000;old_locus_tag=LLC55_15015 NZ_CP086200.1 Protein Homology CDS 3213592 3214632 . - 0 ID=cds-WP_011259222.1;Parent=gene-LLC55_RS15000;Dbxref=Genbank:WP_011259222.1;Name=WP_011259222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003466860.1;locus_tag=LLC55_RS15000;product=ketoacyl-ACP synthase III;protein_id=WP_011259222.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3214638 3214862 . - . ID=gene-LLC55_RS15005;Name=LLC55_RS15005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15005;old_locus_tag=LLC55_15020 NZ_CP086200.1 Protein Homology CDS 3214638 3214862 . - 0 ID=cds-WP_011408679.1;Parent=gene-LLC55_RS15005;Dbxref=Genbank:WP_011408679.1;Name=WP_011408679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302780.1;locus_tag=LLC55_RS15005;product=acyl carrier protein;protein_id=WP_011408679.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3214927 3216036 . - . ID=gene-LLC55_RS15010;Name=LLC55_RS15010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15010;old_locus_tag=LLC55_15025 NZ_CP086200.1 Protein Homology CDS 3214927 3216036 . - 0 ID=cds-WP_041182148.1;Parent=gene-LLC55_RS15010;Dbxref=Genbank:WP_041182148.1;Name=WP_041182148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373650.1;locus_tag=LLC55_RS15010;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_041182148.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3216155 3217639 . - . ID=gene-LLC55_RS15015;Name=LLC55_RS15015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15015;old_locus_tag=LLC55_15030 NZ_CP086200.1 Protein Homology CDS 3216155 3217639 . - 0 ID=cds-WP_011259219.1;Parent=gene-LLC55_RS15015;Dbxref=Genbank:WP_011259219.1;Name=WP_011259219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452274.1;locus_tag=LLC55_RS15015;product=sigma-54 dependent transcriptional regulator;protein_id=WP_011259219.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3217636 3218016 . - . ID=gene-LLC55_RS15020;Name=LLC55_RS15020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15020;old_locus_tag=LLC55_15035 NZ_CP086200.1 Protein Homology CDS 3217636 3218016 . - 0 ID=cds-WP_011259218.1;Parent=gene-LLC55_RS15020;Dbxref=Genbank:WP_011259218.1;Name=WP_011259218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259218.1;locus_tag=LLC55_RS15020;product=response regulator transcription factor;protein_id=WP_011259218.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3218025 3219428 . - . ID=gene-LLC55_RS15025;Name=rpoN;gbkey=Gene;gene=rpoN;gene_biotype=protein_coding;locus_tag=LLC55_RS15025;old_locus_tag=LLC55_15040 NZ_CP086200.1 Protein Homology CDS 3218025 3219428 . - 0 ID=cds-WP_011259217.1;Parent=gene-LLC55_RS15025;Dbxref=Genbank:WP_011259217.1;Name=WP_011259217.1;Ontology_term=GO:0006352,GO:0016987;gbkey=CDS;gene=rpoN;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302731.1;locus_tag=LLC55_RS15025;product=RNA polymerase factor sigma-54;protein_id=WP_011259217.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3219652 3220239 . - . ID=gene-LLC55_RS15030;Name=LLC55_RS15030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15030;old_locus_tag=LLC55_15045 NZ_CP086200.1 Protein Homology CDS 3219652 3220239 . - 0 ID=cds-WP_221205632.1;Parent=gene-LLC55_RS15030;Dbxref=Genbank:WP_221205632.1;Name=WP_221205632.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037101.1;locus_tag=LLC55_RS15030;product=response regulator transcription factor;protein_id=WP_221205632.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3220174 3220311 . + . ID=gene-LLC55_RS15035;Name=LLC55_RS15035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15035;old_locus_tag=LLC55_15050 NZ_CP086200.1 GeneMarkS-2+ CDS 3220174 3220311 . + 0 ID=cds-WP_228329767.1;Parent=gene-LLC55_RS15035;Dbxref=Genbank:WP_228329767.1;Name=WP_228329767.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS15035;product=hypothetical protein;protein_id=WP_228329767.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3220355 3220921 . - . ID=gene-LLC55_RS15040;Name=LLC55_RS15040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15040;old_locus_tag=LLC55_15055 NZ_CP086200.1 Protein Homology CDS 3220355 3220921 . - 0 ID=cds-WP_044756793.1;Parent=gene-LLC55_RS15040;Dbxref=Genbank:WP_044756793.1;Name=WP_044756793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154658.1;locus_tag=LLC55_RS15040;product=PilZ domain-containing protein;protein_id=WP_044756793.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3220921 3221214 . - . ID=gene-LLC55_RS15045;Name=LLC55_RS15045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15045;old_locus_tag=LLC55_15060 NZ_CP086200.1 Protein Homology CDS 3220921 3221214 . - 0 ID=cds-WP_019302728.1;Parent=gene-LLC55_RS15045;Dbxref=Genbank:WP_019302728.1;Name=WP_019302728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154657.1;locus_tag=LLC55_RS15045;product=hypothetical protein;protein_id=WP_019302728.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3221223 3221636 . - . ID=gene-LLC55_RS15050;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=LLC55_RS15050;old_locus_tag=LLC55_15065 NZ_CP086200.1 Protein Homology CDS 3221223 3221636 . - 0 ID=cds-WP_011259214.1;Parent=gene-LLC55_RS15050;Dbxref=Genbank:WP_011259214.1;Name=WP_011259214.1;Ontology_term=GO:0001539,GO:0009288;gbkey=CDS;gene=fliS;go_component=bacterial-type flagellum|0009288||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575950.1;locus_tag=LLC55_RS15050;product=flagellar export chaperone FliS;protein_id=WP_011259214.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3221787 3223112 . - . ID=gene-LLC55_RS15055;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=LLC55_RS15055;old_locus_tag=LLC55_15070 NZ_CP086200.1 Protein Homology CDS 3221787 3223112 . - 0 ID=cds-WP_044756794.1;Parent=gene-LLC55_RS15055;Dbxref=Genbank:WP_044756794.1;Name=WP_044756794.1;Ontology_term=GO:0007155,GO:0009288;gbkey=CDS;gene=fliD;go_component=bacterial-type flagellum|0009288||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380873.1;locus_tag=LLC55_RS15055;product=flagellar filament capping protein FliD;protein_id=WP_044756794.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3223386 3224585 . - . ID=gene-LLC55_RS15060;Name=LLC55_RS15060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15060;old_locus_tag=LLC55_15075 NZ_CP086200.1 Protein Homology CDS 3223386 3224585 . - 0 ID=cds-WP_011408675.1;Parent=gene-LLC55_RS15060;Dbxref=Genbank:WP_011408675.1;Name=WP_011408675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962409.1;locus_tag=LLC55_RS15060;product=flagellin;protein_id=WP_011408675.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3224905 3226110 . - . ID=gene-LLC55_RS15065;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=LLC55_RS15065;old_locus_tag=LLC55_15080 NZ_CP086200.1 Protein Homology CDS 3224905 3226110 . - 0 ID=cds-WP_011259211.1;Parent=gene-LLC55_RS15065;Dbxref=Genbank:WP_011259211.1;Name=WP_011259211.1;Ontology_term=GO:0001539,GO:0005198,GO:0009424;gbkey=CDS;gene=flgL;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154653.1;locus_tag=LLC55_RS15065;product=flagellar hook-associated protein FlgL;protein_id=WP_011259211.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3226110 3227984 . - . ID=gene-LLC55_RS15070;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=LLC55_RS15070;old_locus_tag=LLC55_15085 NZ_CP086200.1 Protein Homology CDS 3226110 3227984 . - 0 ID=cds-WP_069959875.1;Parent=gene-LLC55_RS15070;Dbxref=Genbank:WP_069959875.1;Name=WP_069959875.1;Ontology_term=GO:0001539,GO:0005198,GO:0009424;gbkey=CDS;gene=flgK;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300294.1;locus_tag=LLC55_RS15070;product=flagellar hook-associated protein FlgK;protein_id=WP_069959875.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3227996 3229174 . - . ID=gene-LLC55_RS15075;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=LLC55_RS15075;old_locus_tag=LLC55_15090 NZ_CP086200.1 Protein Homology CDS 3227996 3229174 . - 0 ID=cds-WP_011259209.1;Parent=gene-LLC55_RS15075;Dbxref=Genbank:WP_011259209.1;Name=WP_011259209.1;Ontology_term=GO:0001539,GO:0016798;gbkey=CDS;gene=flgJ;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482966.1;locus_tag=LLC55_RS15075;product=flagellar assembly peptidoglycan hydrolase FlgJ;protein_id=WP_011259209.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3229176 3230294 . - . ID=gene-LLC55_RS15080;Name=LLC55_RS15080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15080;old_locus_tag=LLC55_15095 NZ_CP086200.1 Protein Homology CDS 3229176 3230294 . - 0 ID=cds-WP_011259208.1;Parent=gene-LLC55_RS15080;Dbxref=Genbank:WP_011259208.1;Name=WP_011259208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482965.1;locus_tag=LLC55_RS15080;product=flagellar basal body P-ring protein FlgI;protein_id=WP_011259208.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3230305 3230997 . - . ID=gene-LLC55_RS15085;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=LLC55_RS15085;old_locus_tag=LLC55_15100 NZ_CP086200.1 Protein Homology CDS 3230305 3230997 . - 0 ID=cds-WP_011259207.1;Parent=gene-LLC55_RS15085;Dbxref=Genbank:WP_011259207.1;Name=WP_011259207.1;Ontology_term=GO:0071973,GO:0003774,GO:0009427;gbkey=CDS;gene=flgH;go_component=bacterial-type flagellum basal body%2C distal rod%2C L ring|0009427||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901722.1;locus_tag=LLC55_RS15085;product=flagellar basal body L-ring protein FlgH;protein_id=WP_011259207.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3231035 3231820 . - . ID=gene-LLC55_RS15090;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=LLC55_RS15090;old_locus_tag=LLC55_15105 NZ_CP086200.1 Protein Homology CDS 3231035 3231820 . - 0 ID=cds-WP_011259206.1;Parent=gene-LLC55_RS15090;Dbxref=Genbank:WP_011259206.1;Name=WP_011259206.1;Ontology_term=GO:0071973,GO:0009426;gbkey=CDS;gene=flgG;go_component=bacterial-type flagellum basal body%2C distal rod|0009426||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901723.1;locus_tag=LLC55_RS15090;product=flagellar basal-body rod protein FlgG;protein_id=WP_011259206.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3232401 3233156 . - . ID=gene-LLC55_RS15095;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=protein_coding;locus_tag=LLC55_RS15095;old_locus_tag=LLC55_15110 NZ_CP086200.1 Protein Homology CDS 3232401 3233156 . - 0 ID=cds-WP_011259205.1;Parent=gene-LLC55_RS15095;Dbxref=Genbank:WP_011259205.1;Name=WP_011259205.1;Ontology_term=GO:0001539,GO:0005198;gbkey=CDS;gene=flgF;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154648.1;locus_tag=LLC55_RS15095;product=flagellar basal-body rod protein FlgF;protein_id=WP_011259205.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3233302 3234525 . - . ID=gene-LLC55_RS15100;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=LLC55_RS15100;old_locus_tag=LLC55_15115 NZ_CP086200.1 Protein Homology CDS 3233302 3234525 . - 0 ID=cds-WP_011259204.1;Parent=gene-LLC55_RS15100;Dbxref=Genbank:WP_011259204.1;Name=WP_011259204.1;gbkey=CDS;gene=flgE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159265.1;locus_tag=LLC55_RS15100;product=flagellar hook protein FlgE;protein_id=WP_011259204.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3234557 3235222 . - . ID=gene-LLC55_RS15105;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=LLC55_RS15105;old_locus_tag=LLC55_15120 NZ_CP086200.1 Protein Homology CDS 3234557 3235222 . - 0 ID=cds-WP_011259203.1;Parent=gene-LLC55_RS15105;Dbxref=Genbank:WP_011259203.1;Name=WP_011259203.1;Note=acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod;gbkey=CDS;gene=flgD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117421.1;locus_tag=LLC55_RS15105;product=flagellar basal body rod modification protein FlgD;protein_id=WP_011259203.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3235260 3235667 . - . ID=gene-LLC55_RS15110;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=LLC55_RS15110;old_locus_tag=LLC55_15125 NZ_CP086200.1 Protein Homology CDS 3235260 3235667 . - 0 ID=cds-WP_005914451.1;Parent=gene-LLC55_RS15110;Dbxref=Genbank:WP_005914451.1;Name=WP_005914451.1;Ontology_term=GO:0001539,GO:0005198,GO:0009425;gbkey=CDS;gene=flgC;go_component=bacterial-type flagellum basal body|0009425||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004425624.1;locus_tag=LLC55_RS15110;product=flagellar basal body rod protein FlgC;protein_id=WP_005914451.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3235671 3236069 . - . ID=gene-LLC55_RS15115;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=LLC55_RS15115;old_locus_tag=LLC55_15130 NZ_CP086200.1 Protein Homology CDS 3235671 3236069 . - 0 ID=cds-WP_011259201.1;Parent=gene-LLC55_RS15115;Dbxref=Genbank:WP_011259201.1;Name=WP_011259201.1;Ontology_term=GO:0001539,GO:0005198,GO:0009429;gbkey=CDS;gene=flgB;go_component=bacterial-type flagellum basal body%2C proximal rod|0009429||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482950.1;locus_tag=LLC55_RS15115;product=flagellar basal body rod protein FlgB;protein_id=WP_011259201.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3236384 3237328 . - . ID=gene-LLC55_RS15120;Name=LLC55_RS15120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15120;old_locus_tag=LLC55_15135 NZ_CP086200.1 Protein Homology CDS 3236384 3237328 . - 0 ID=cds-WP_011259200.1;Parent=gene-LLC55_RS15120;Dbxref=Genbank:WP_011259200.1;Name=WP_011259200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813451.1;locus_tag=LLC55_RS15120;product=chemotaxis protein;protein_id=WP_011259200.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3237687 3238331 . + . ID=gene-LLC55_RS15125;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=LLC55_RS15125;old_locus_tag=LLC55_15140 NZ_CP086200.1 Protein Homology CDS 3237687 3238331 . + 0 ID=cds-WP_011259199.1;Parent=gene-LLC55_RS15125;Dbxref=Genbank:WP_011259199.1;Name=WP_011259199.1;Ontology_term=GO:0001539,GO:0005198,GO:0009428;gbkey=CDS;gene=flgA;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373601.1;locus_tag=LLC55_RS15125;product=flagellar basal body P-ring formation chaperone FlgA;protein_id=WP_011259199.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3238398 3238709 . + . ID=gene-LLC55_RS15130;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=LLC55_RS15130;old_locus_tag=LLC55_15145 NZ_CP086200.1 Protein Homology CDS 3238398 3238709 . + 0 ID=cds-WP_011259198.1;Parent=gene-LLC55_RS15130;Dbxref=Genbank:WP_011259198.1;Name=WP_011259198.1;Ontology_term=GO:0045892;gbkey=CDS;gene=flgM;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503328.1;locus_tag=LLC55_RS15130;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=WP_011259198.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3238725 3239057 . + . ID=gene-LLC55_RS15135;Name=LLC55_RS15135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15135;old_locus_tag=LLC55_15150 NZ_CP086200.1 Protein Homology CDS 3238725 3239057 . + 0 ID=cds-WP_010373599.1;Parent=gene-LLC55_RS15135;Dbxref=Genbank:WP_010373599.1;Name=WP_010373599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450202.1;locus_tag=LLC55_RS15135;product=hypothetical protein;protein_id=WP_010373599.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3239223 3240449 . + . ID=gene-LLC55_RS15140;Name=LLC55_RS15140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15140;old_locus_tag=LLC55_15155 NZ_CP086200.1 Protein Homology CDS 3239223 3240449 . + 0 ID=cds-WP_011259197.1;Parent=gene-LLC55_RS15140;Dbxref=Genbank:WP_011259197.1;Name=WP_011259197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304404.1;locus_tag=LLC55_RS15140;product=ATP-binding protein;protein_id=WP_011259197.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3240577 3242298 . - . ID=gene-LLC55_RS15145;Name=LLC55_RS15145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15145;old_locus_tag=LLC55_15160 NZ_CP086200.1 Protein Homology CDS 3240577 3242298 . - 0 ID=cds-WP_011259196.1;Parent=gene-LLC55_RS15145;Dbxref=Genbank:WP_011259196.1;Name=WP_011259196.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154643.1;locus_tag=LLC55_RS15145;product=EAL domain-containing protein;protein_id=WP_011259196.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3242302 3244434 . - . ID=gene-LLC55_RS15150;Name=LLC55_RS15150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15150;old_locus_tag=LLC55_15165 NZ_CP086200.1 Protein Homology CDS 3242302 3244434 . - 0 ID=cds-WP_011259195.1;Parent=gene-LLC55_RS15150;Dbxref=Genbank:WP_011259195.1;Name=WP_011259195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848734.1;locus_tag=LLC55_RS15150;product=PAS domain S-box protein;protein_id=WP_011259195.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3244555 3247341 . + . ID=gene-LLC55_RS15155;Name=LLC55_RS15155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15155;old_locus_tag=LLC55_15170 NZ_CP086200.1 Protein Homology CDS 3244555 3247341 . + 0 ID=cds-WP_027703235.1;Parent=gene-LLC55_RS15155;Dbxref=Genbank:WP_027703235.1;Name=WP_027703235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347293.1;locus_tag=LLC55_RS15155;product=EAL domain-containing protein;protein_id=WP_027703235.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3247812 3248495 . - . ID=gene-LLC55_RS15160;Name=LLC55_RS15160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15160;old_locus_tag=LLC55_15175 NZ_CP086200.1 Protein Homology CDS 3247812 3248495 . - 0 ID=cds-WP_011259193.1;Parent=gene-LLC55_RS15160;Dbxref=Genbank:WP_011259193.1;Name=WP_011259193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259193.1;locus_tag=LLC55_RS15160;product=hypothetical protein;protein_id=WP_011259193.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3248770 3249057 . - . ID=gene-LLC55_RS15165;Name=LLC55_RS15165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15165;old_locus_tag=LLC55_15180 NZ_CP086200.1 Protein Homology CDS 3248770 3249057 . - 0 ID=cds-WP_011259192.1;Parent=gene-LLC55_RS15165;Dbxref=Genbank:WP_011259192.1;Name=WP_011259192.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575786.1;locus_tag=LLC55_RS15165;product=hypothetical protein;protein_id=WP_011259192.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3249143 3250420 . - . ID=gene-LLC55_RS15170;Name=LLC55_RS15170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15170;old_locus_tag=LLC55_15185 NZ_CP086200.1 Protein Homology CDS 3249143 3250420 . - 0 ID=cds-WP_011259191.1;Parent=gene-LLC55_RS15170;Dbxref=Genbank:WP_011259191.1;Name=WP_011259191.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159263.1;locus_tag=LLC55_RS15170;product=methyl-accepting chemotaxis protein;protein_id=WP_011259191.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3250481 3251095 . - . ID=gene-LLC55_RS15175;Name=hflD;gbkey=Gene;gene=hflD;gene_biotype=protein_coding;locus_tag=LLC55_RS15175;old_locus_tag=LLC55_15190 NZ_CP086200.1 Protein Homology CDS 3250481 3251095 . - 0 ID=cds-WP_011408667.1;Parent=gene-LLC55_RS15175;Dbxref=Genbank:WP_011408667.1;Name=WP_011408667.1;gbkey=CDS;gene=hflD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_029217215.1;locus_tag=LLC55_RS15175;product=high frequency lysogenization protein HflD;protein_id=WP_011408667.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3251095 3252231 . - . ID=gene-LLC55_RS15180;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=LLC55_RS15180;old_locus_tag=LLC55_15195 NZ_CP086200.1 Protein Homology CDS 3251095 3252231 . - 0 ID=cds-WP_011259189.1;Parent=gene-LLC55_RS15180;Dbxref=Genbank:WP_011259189.1;Name=WP_011259189.1;Ontology_term=GO:0008033,GO:0016740,GO:0016783;gbkey=CDS;gene=mnmA;go_function=transferase activity|0016740||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575784.1;locus_tag=LLC55_RS15180;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_011259189.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3252228 3252686 . - . ID=gene-LLC55_RS15185;Name=LLC55_RS15185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15185;old_locus_tag=LLC55_15200 NZ_CP086200.1 Protein Homology CDS 3252228 3252686 . - 0 ID=cds-WP_011408665.1;Parent=gene-LLC55_RS15185;Dbxref=Genbank:WP_011408665.1;Name=WP_011408665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964277.1;locus_tag=LLC55_RS15185;product=NUDIX hydrolase;protein_id=WP_011408665.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3252937 3253257 . + . ID=gene-LLC55_RS15190;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=LLC55_RS15190;old_locus_tag=LLC55_15205 NZ_CP086200.1 Protein Homology CDS 3252937 3253257 . + 0 ID=cds-WP_005914463.1;Parent=gene-LLC55_RS15190;Dbxref=Genbank:WP_005914463.1;Name=WP_005914463.1;gbkey=CDS;gene=clpS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914463.1;locus_tag=LLC55_RS15190;product=ATP-dependent Clp protease adapter ClpS;protein_id=WP_005914463.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3253401 3255683 . + . ID=gene-LLC55_RS15195;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=LLC55_RS15195;old_locus_tag=LLC55_15210 NZ_CP086200.1 Protein Homology CDS 3253401 3255683 . + 0 ID=cds-WP_011259186.1;Parent=gene-LLC55_RS15195;Dbxref=Genbank:WP_011259186.1;Name=WP_011259186.1;Ontology_term=GO:0006508,GO:0043335,GO:0004176,GO:0009368;gbkey=CDS;gene=clpA;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA;go_process=proteolysis|0006508||IEA,protein unfolding|0043335||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901749.1;locus_tag=LLC55_RS15195;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_011259186.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3255964 3256182 . - . ID=gene-LLC55_RS15200;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=LLC55_RS15200;old_locus_tag=LLC55_15215 NZ_CP086200.1 Protein Homology CDS 3255964 3256182 . - 0 ID=cds-WP_002813418.1;Parent=gene-LLC55_RS15200;Dbxref=Genbank:WP_002813418.1;Name=WP_002813418.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002553999.1;locus_tag=LLC55_RS15200;product=translation initiation factor IF-1;protein_id=WP_002813418.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3256263 3257060 . - . ID=gene-LLC55_RS15205;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=LLC55_RS15205;old_locus_tag=LLC55_15220 NZ_CP086200.1 Protein Homology CDS 3256263 3257060 . - 0 ID=cds-WP_011259185.1;Parent=gene-LLC55_RS15205;Dbxref=Genbank:WP_011259185.1;Name=WP_011259185.1;Ontology_term=GO:0006508,GO:0008914;gbkey=CDS;gene=aat;go_function=leucyltransferase activity|0008914||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503344.1;locus_tag=LLC55_RS15205;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_011259185.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3257149 3257550 . - . ID=gene-LLC55_RS15210;Name=LLC55_RS15210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15210;old_locus_tag=LLC55_15225 NZ_CP086200.1 GeneMarkS-2+ CDS 3257149 3257550 . - 0 ID=cds-WP_011259184.1;Parent=gene-LLC55_RS15210;Dbxref=Genbank:WP_011259184.1;Name=WP_011259184.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS15210;product=hypothetical protein;protein_id=WP_011259184.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3257584 3257769 . - . ID=gene-LLC55_RS15215;Name=LLC55_RS15215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15215;old_locus_tag=LLC55_15230 NZ_CP086200.1 GeneMarkS-2+ CDS 3257584 3257769 . - 0 ID=cds-WP_228329612.1;Parent=gene-LLC55_RS15215;Dbxref=Genbank:WP_228329612.1;Name=WP_228329612.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS15215;product=hypothetical protein;protein_id=WP_228329612.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3257849 3258181 . - . ID=gene-LLC55_RS15220;Name=LLC55_RS15220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15220;old_locus_tag=LLC55_15235 NZ_CP086200.1 Protein Homology CDS 3257849 3258181 . - 0 ID=cds-WP_069959873.1;Parent=gene-LLC55_RS15220;Dbxref=Genbank:WP_069959873.1;Name=WP_069959873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408663.1;locus_tag=LLC55_RS15220;product=hypothetical protein;protein_id=WP_069959873.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3258443 3259564 . - . ID=gene-LLC55_RS15225;Name=LLC55_RS15225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15225;old_locus_tag=LLC55_15240 NZ_CP086200.1 Protein Homology CDS 3258443 3259564 . - 0 ID=cds-WP_075242218.1;Parent=gene-LLC55_RS15225;Dbxref=Genbank:WP_075242218.1;Name=WP_075242218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300271.1;locus_tag=LLC55_RS15225;product=GNAT family N-acetyltransferase;protein_id=WP_075242218.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3259622 3260590 . - . ID=gene-LLC55_RS15230;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=LLC55_RS15230;old_locus_tag=LLC55_15245 NZ_CP086200.1 Protein Homology CDS 3259622 3260590 . - 0 ID=cds-WP_011259181.1;Parent=gene-LLC55_RS15230;Dbxref=Genbank:WP_011259181.1;Name=WP_011259181.1;Ontology_term=GO:0004791;gbkey=CDS;gene=trxB;go_function=thioredoxin-disulfide reductase activity|0004791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964266.1;locus_tag=LLC55_RS15230;product=thioredoxin-disulfide reductase;protein_id=WP_011259181.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3260874 3263231 . + . ID=gene-LLC55_RS15235;Name=LLC55_RS15235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15235;old_locus_tag=LLC55_15250 NZ_CP086200.1 Protein Homology CDS 3260874 3263231 . + 0 ID=cds-WP_053504269.1;Parent=gene-LLC55_RS15235;Dbxref=Genbank:WP_053504269.1;Name=WP_053504269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172352.1;locus_tag=LLC55_RS15235;product=DNA translocase FtsK;protein_id=WP_053504269.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3263394 3265328 . + . ID=gene-LLC55_RS15240;Name=LLC55_RS15240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15240;old_locus_tag=LLC55_15255 NZ_CP086200.1 Protein Homology CDS 3263394 3265328 . + 0 ID=cds-WP_075242219.1;Parent=gene-LLC55_RS15240;Dbxref=Genbank:WP_075242219.1;Name=WP_075242219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373562.1;locus_tag=LLC55_RS15240;product=DUF3857 and transglutaminase domain-containing protein;protein_id=WP_075242219.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3265393 3266064 . + . ID=gene-LLC55_RS15245;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=LLC55_RS15245;old_locus_tag=LLC55_15260 NZ_CP086200.1 Protein Homology CDS 3265393 3266064 . + 0 ID=cds-WP_027703232.1;Parent=gene-LLC55_RS15245;Dbxref=Genbank:WP_027703232.1;Name=WP_027703232.1;Ontology_term=GO:0009306,GO:0008320;gbkey=CDS;gene=lolA;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301000.1;locus_tag=LLC55_RS15245;product=outer membrane lipoprotein chaperone LolA;protein_id=WP_027703232.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3266177 3270343 . - . ID=gene-LLC55_RS15250;Name=LLC55_RS15250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15250;old_locus_tag=LLC55_15265 NZ_CP086200.1 Protein Homology CDS 3266177 3270343 . - 0 ID=cds-WP_011259177.1;Parent=gene-LLC55_RS15250;Dbxref=Genbank:WP_011259177.1;Name=WP_011259177.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973390.1;locus_tag=LLC55_RS15250;product=XopZ family type III secretion system effector;protein_id=WP_011259177.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3270580 3271956 . + . ID=gene-LLC55_RS15255;Name=LLC55_RS15255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15255;old_locus_tag=LLC55_15270 NZ_CP086200.1 Protein Homology CDS 3270580 3271956 . + 0 ID=cds-WP_075242933.1;Parent=gene-LLC55_RS15255;Dbxref=Genbank:WP_075242933.1;Name=WP_075242933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303930.1;locus_tag=LLC55_RS15255;product=replication-associated recombination protein A;protein_id=WP_075242933.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3271988 3272314 . - . ID=gene-LLC55_RS15260;Name=LLC55_RS15260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15260;old_locus_tag=LLC55_15275 NZ_CP086200.1 Protein Homology CDS 3271988 3272314 . - 0 ID=cds-WP_024710736.1;Parent=gene-LLC55_RS15260;Dbxref=Genbank:WP_024710736.1;Name=WP_024710736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259175.1;locus_tag=LLC55_RS15260;product=DUF190 domain-containing protein;protein_id=WP_024710736.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3272311 3272718 . - . ID=gene-LLC55_RS15265;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=LLC55_RS15265;old_locus_tag=LLC55_15280 NZ_CP086200.1 Protein Homology CDS 3272311 3272718 . - 0 ID=cds-WP_033004667.1;Parent=gene-LLC55_RS15265;Dbxref=Genbank:WP_033004667.1;Name=WP_033004667.1;Ontology_term=GO:0016020;gbkey=CDS;gene=crcB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503356.1;locus_tag=LLC55_RS15265;product=fluoride efflux transporter CrcB;protein_id=WP_033004667.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3272750 3273100 . - . ID=gene-LLC55_RS15270;Name=LLC55_RS15270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15270;old_locus_tag=LLC55_15285 NZ_CP086200.1 Protein Homology CDS 3272750 3273100 . - 0 ID=cds-WP_075242932.1;Parent=gene-LLC55_RS15270;Dbxref=Genbank:WP_075242932.1;Name=WP_075242932.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408659.1;locus_tag=LLC55_RS15270;product=hypothetical protein;protein_id=WP_075242932.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3273097 3274428 . - . ID=gene-LLC55_RS15275;Name=LLC55_RS15275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15275;old_locus_tag=LLC55_15290 NZ_CP086200.1 Protein Homology CDS 3273097 3274428 . - 0 ID=cds-WP_075242931.1;Parent=gene-LLC55_RS15275;Dbxref=Genbank:WP_075242931.1;Name=WP_075242931.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503359.1;locus_tag=LLC55_RS15275;product=voltage-gated chloride channel family protein;protein_id=WP_075242931.1;transl_table=11 NZ_CP086200.1 cmsearch riboswitch 3274515 3274591 . - . ID=id-NZ_CP086200.1:3274515..3274591;Dbxref=RFAM:RF01734;Note=Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride%3B They are found in a wide variety of bacteria and archaea;bound_moiety=fluoride;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP086200.1 RefSeq gene 3274749 3275954 . - . ID=gene-LLC55_RS15280;Name=LLC55_RS15280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15280;old_locus_tag=LLC55_15295 NZ_CP086200.1 Protein Homology CDS 3274749 3275954 . - 0 ID=cds-WP_053504275.1;Parent=gene-LLC55_RS15280;Dbxref=Genbank:WP_053504275.1;Name=WP_053504275.1;Ontology_term=GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812978.1;locus_tag=LLC55_RS15280;product=acetyl-CoA C-acyltransferase;protein_id=WP_053504275.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3276112 3278484 . - . ID=gene-LLC55_RS15285;Name=LLC55_RS15285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15285;old_locus_tag=LLC55_15300 NZ_CP086200.1 Protein Homology CDS 3276112 3278484 . - 0 ID=cds-WP_011259171.1;Parent=gene-LLC55_RS15285;Dbxref=Genbank:WP_011259171.1;Name=WP_011259171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158309.1;locus_tag=LLC55_RS15285;product=3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein;protein_id=WP_011259171.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3278509 3279141 . - . ID=gene-LLC55_RS15290;Name=LLC55_RS15290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15290;old_locus_tag=LLC55_15305 NZ_CP086200.1 Protein Homology CDS 3278509 3279141 . - 0 ID=cds-WP_011259170.1;Parent=gene-LLC55_RS15290;Dbxref=Genbank:WP_011259170.1;Name=WP_011259170.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463154.1;locus_tag=LLC55_RS15290;product=TetR/AcrR family transcriptional regulator;protein_id=WP_011259170.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3279361 3279786 . + . ID=gene-LLC55_RS15295;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=LLC55_RS15295;old_locus_tag=LLC55_15310 NZ_CP086200.1 Protein Homology CDS 3279361 3279786 . + 0 ID=cds-WP_002812972.1;Parent=gene-LLC55_RS15295;Dbxref=Genbank:WP_002812972.1;Name=WP_002812972.1;Ontology_term=GO:0006165,GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;go_process=nucleoside diphosphate phosphorylation|0006165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005409295.1;locus_tag=LLC55_RS15295;product=nucleoside-diphosphate kinase;protein_id=WP_002812972.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3279817 3281010 . + . ID=gene-LLC55_RS15300;Name=rlmN;gbkey=Gene;gene=rlmN;gene_biotype=protein_coding;locus_tag=LLC55_RS15300;old_locus_tag=LLC55_15315 NZ_CP086200.1 Protein Homology CDS 3279817 3281010 . + 0 ID=cds-WP_228329755.1;Parent=gene-LLC55_RS15300;Dbxref=Genbank:WP_228329755.1;Name=WP_228329755.1;Ontology_term=GO:0031167,GO:0008757,GO:0016433;gbkey=CDS;gene=rlmN;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,rRNA (adenine) methyltransferase activity|0016433||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914477.1;locus_tag=LLC55_RS15300;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;protein_id=WP_228329755.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3281021 3281809 . + . ID=gene-LLC55_RS15305;Name=pilW;gbkey=Gene;gene=pilW;gene_biotype=protein_coding;locus_tag=LLC55_RS15305;old_locus_tag=LLC55_15320 NZ_CP086200.1 Protein Homology CDS 3281021 3281809 . + 0 ID=cds-WP_011408658.1;Parent=gene-LLC55_RS15305;Dbxref=Genbank:WP_011408658.1;Name=WP_011408658.1;Ontology_term=GO:0005515;gbkey=CDS;gene=pilW;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158306.1;locus_tag=LLC55_RS15305;product=type IV pilus biogenesis/stability protein PilW;protein_id=WP_011408658.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3281806 3282666 . + . ID=gene-LLC55_RS15310;Name=LLC55_RS15310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15310;old_locus_tag=LLC55_15325 NZ_CP086200.1 Protein Homology CDS 3281806 3282666 . + 0 ID=cds-WP_011259167.1;Parent=gene-LLC55_RS15310;Dbxref=Genbank:WP_011259167.1;Name=WP_011259167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445040.1;locus_tag=LLC55_RS15310;product=helix-turn-helix domain-containing protein;protein_id=WP_011259167.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3282737 3283375 . + . ID=gene-LLC55_RS15315;Name=LLC55_RS15315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15315;old_locus_tag=LLC55_15330 NZ_CP086200.1 Protein Homology CDS 3282737 3283375 . + 0 ID=cds-WP_011259166.1;Parent=gene-LLC55_RS15315;Dbxref=Genbank:WP_011259166.1;Name=WP_011259166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503367.1;locus_tag=LLC55_RS15315;product=tetratricopeptide repeat protein;protein_id=WP_011259166.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3283375 3284592 . + . ID=gene-LLC55_RS15320;Name=bamB;gbkey=Gene;gene=bamB;gene_biotype=protein_coding;locus_tag=LLC55_RS15320;old_locus_tag=LLC55_15335 NZ_CP086200.1 Protein Homology CDS 3283375 3284592 . + 0 ID=cds-WP_011408657.1;Parent=gene-LLC55_RS15320;Dbxref=Genbank:WP_011408657.1;Name=WP_011408657.1;Ontology_term=GO:0005515,GO:0009279;gbkey=CDS;gene=bamB;go_component=cell outer membrane|0009279||IEA;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963809.1;locus_tag=LLC55_RS15320;product=outer membrane protein assembly factor BamB;protein_id=WP_011408657.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3284603 3286000 . + . ID=gene-LLC55_RS15325;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=LLC55_RS15325;old_locus_tag=LLC55_15340 NZ_CP086200.1 Protein Homology CDS 3284603 3286000 . + 0 ID=cds-WP_011259164.1;Parent=gene-LLC55_RS15325;Dbxref=Genbank:WP_011259164.1;Name=WP_011259164.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904421.1;locus_tag=LLC55_RS15325;product=ribosome biogenesis GTPase Der;protein_id=WP_011259164.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3286315 3287535 . + . ID=gene-LLC55_RS15330;Name=LLC55_RS15330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15330;old_locus_tag=LLC55_15345 NZ_CP086200.1 Protein Homology CDS 3286315 3287535 . + 0 ID=cds-WP_011259163.1;Parent=gene-LLC55_RS15330;Dbxref=Genbank:WP_011259163.1;Name=WP_011259163.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160125.1;locus_tag=LLC55_RS15330;product=molybdopterin molybdotransferase MoeA;protein_id=WP_011259163.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3287590 3287666 . - . ID=gene-LLC55_RS15335;Name=LLC55_RS15335;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS15335;old_locus_tag=LLC55_15350 NZ_CP086200.1 cmsearch ncRNA 3287590 3287666 . - . ID=rna-LLC55_RS15335;Parent=gene-LLC55_RS15335;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15335;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3287590 3287666 . - . ID=exon-LLC55_RS15335-1;Parent=rna-LLC55_RS15335;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15335;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3287650 3287723 . + . ID=gene-LLC55_RS15340;Name=LLC55_RS15340;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS15340;old_locus_tag=LLC55_15355 NZ_CP086200.1 cmsearch ncRNA 3287650 3287723 . + . ID=rna-LLC55_RS15340;Parent=gene-LLC55_RS15340;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15340;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3287650 3287723 . + . ID=exon-LLC55_RS15340-1;Parent=rna-LLC55_RS15340;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15340;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 3287732 3288790 . - . ID=gene-LLC55_RS15345;Name=LLC55_RS15345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15345;old_locus_tag=LLC55_15360;pseudo=true NZ_CP086200.1 Protein Homology CDS 3287732 3288790 . - 0 ID=cds-LLC55_RS15345;Parent=gene-LLC55_RS15345;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408016.1;locus_tag=LLC55_RS15345;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3289170 3289334 . + . ID=gene-LLC55_RS15350;Name=LLC55_RS15350;end_range=3289334,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15350;old_locus_tag=LLC55_15365;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3289170 3289334 . + 0 ID=cds-LLC55_RS15350;Parent=gene-LLC55_RS15350;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3289334,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LLC55_RS15350;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3289533 3289811 . + . ID=gene-LLC55_RS15355;Name=LLC55_RS15355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15355;old_locus_tag=LLC55_15370 NZ_CP086200.1 GeneMarkS-2+ CDS 3289533 3289811 . + 0 ID=cds-WP_229001952.1;Parent=gene-LLC55_RS15355;Dbxref=Genbank:WP_229001952.1;Name=WP_229001952.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS15355;product=hypothetical protein;protein_id=WP_229001952.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3289906 3290874 . - . ID=gene-LLC55_RS15360;Name=LLC55_RS15360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15360;old_locus_tag=LLC55_15375 NZ_CP086200.1 Protein Homology CDS 3289906 3290874 . - 0 ID=cds-WP_011257031.1-6;Parent=gene-LLC55_RS15360;Dbxref=Genbank:WP_011257031.1;Name=WP_011257031.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS15360;product=IS5-like element ISXo1 family transposase;protein_id=WP_011257031.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3290939 3291592 . + . ID=gene-LLC55_RS15365;Name=LLC55_RS15365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15365;old_locus_tag=LLC55_15380;partial=true;pseudo=true;start_range=.,3290939 NZ_CP086200.1 Protein Homology CDS 3290939 3291592 . + 0 ID=cds-LLC55_RS15365;Parent=gene-LLC55_RS15365;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS15365;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,3290939;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3291678 3292890 . - . ID=gene-LLC55_RS15370;Name=LLC55_RS15370;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15370;old_locus_tag=LLC55_15385;pseudo=true NZ_CP086200.1 Protein Homology CDS 3291678 3292890 . - 0 ID=cds-LLC55_RS15370;Parent=gene-LLC55_RS15370;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS15370;product=IS4-like element ISXo14 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3293005 3293372 . + . ID=gene-LLC55_RS15375;Name=LLC55_RS15375;end_range=3293372,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15375;old_locus_tag=LLC55_15390;partial=true;pseudo=true;start_range=.,3293005 NZ_CP086200.1 Protein Homology CDS 3293005 3293372 . + 0 ID=cds-LLC55_RS15375;Parent=gene-LLC55_RS15375;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=3293372,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS15375;partial=true;product=transposase;pseudo=true;start_range=.,3293005;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3293498 3294843 . + . ID=gene-LLC55_RS15380;Name=LLC55_RS15380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15380;old_locus_tag=LLC55_15395;pseudo=true NZ_CP086200.1 Protein Homology CDS 3293498 3294843 . + 0 ID=cds-LLC55_RS15380;Parent=gene-LLC55_RS15380;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS15380;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3294867 3295832 . - . ID=gene-LLC55_RS15385;Name=LLC55_RS15385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15385;old_locus_tag=LLC55_15400 NZ_CP086200.1 Protein Homology CDS 3294867 3295832 . - 0 ID=cds-WP_109181957.1;Parent=gene-LLC55_RS15385;Dbxref=Genbank:WP_109181957.1;Name=WP_109181957.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS15385;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181957.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3295921 3296112 . + . ID=gene-LLC55_RS15390;Name=LLC55_RS15390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15390;old_locus_tag=LLC55_15405;partial=true;pseudo=true;start_range=.,3295921 NZ_CP086200.1 Protein Homology CDS 3295921 3296112 . + 0 ID=cds-LLC55_RS15390;Parent=gene-LLC55_RS15390;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS15390;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,3295921;transl_table=11 NZ_CP086200.1 RefSeq gene 3296109 3297248 . - . ID=gene-LLC55_RS15395;Name=moeB;gbkey=Gene;gene=moeB;gene_biotype=protein_coding;locus_tag=LLC55_RS15395;old_locus_tag=LLC55_15410 NZ_CP086200.1 Protein Homology CDS 3296109 3297248 . - 0 ID=cds-WP_011259151.1;Parent=gene-LLC55_RS15395;Dbxref=Genbank:WP_011259151.1;Name=WP_011259151.1;gbkey=CDS;gene=moeB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259151.1;locus_tag=LLC55_RS15395;product=molybdopterin-synthase adenylyltransferase MoeB;protein_id=WP_011259151.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3297500 3298819 . - . ID=gene-LLC55_RS15400;Name=LLC55_RS15400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15400;old_locus_tag=LLC55_15415 NZ_CP086200.1 Protein Homology CDS 3297500 3298819 . - 0 ID=cds-WP_109181956.1;Parent=gene-LLC55_RS15400;Dbxref=Genbank:WP_109181956.1;Name=WP_109181956.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS15400;product=IS701 family transposase;protein_id=WP_109181956.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3298917 3299974 . + . ID=gene-LLC55_RS15405;Name=LLC55_RS15405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15405;old_locus_tag=LLC55_15420 NZ_CP086200.1 Protein Homology CDS 3298917 3299493 . + 0 ID=cds-WP_109181955.1;Parent=gene-LLC55_RS15405;Dbxref=Genbank:WP_109181955.1;Name=WP_109181955.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257047.1;locus_tag=LLC55_RS15405;product=IS630 family transposase;protein_id=WP_109181955.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3299493 3299974 . + 2 ID=cds-WP_109181955.1;Parent=gene-LLC55_RS15405;Dbxref=Genbank:WP_109181955.1;Name=WP_109181955.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257047.1;locus_tag=LLC55_RS15405;product=IS630 family transposase;protein_id=WP_109181955.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3300062 3301966 . - . ID=gene-LLC55_RS15410;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=LLC55_RS15410;old_locus_tag=LLC55_15425 NZ_CP086200.1 Protein Homology CDS 3300062 3301966 . - 0 ID=cds-WP_011408651.1;Parent=gene-LLC55_RS15410;Dbxref=Genbank:WP_011408651.1;Name=WP_011408651.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887,GO:0051082;gbkey=CDS;gene=htpG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303855.1;locus_tag=LLC55_RS15410;product=molecular chaperone HtpG;protein_id=WP_011408651.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3302141 3302827 . + . ID=gene-LLC55_RS15415;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=LLC55_RS15415;old_locus_tag=LLC55_15430 NZ_CP086200.1 Protein Homology CDS 3302141 3302827 . + 0 ID=cds-WP_012444764.1;Parent=gene-LLC55_RS15415;Dbxref=Genbank:WP_012444764.1;Name=WP_012444764.1;Ontology_term=GO:0031167,GO:0052913;gbkey=CDS;gene=rsmD;go_function=16S rRNA (guanine(966)-N(2))-methyltransferase activity|0052913||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157278.1;locus_tag=LLC55_RS15415;product=16S rRNA (guanine(966)-N(2))-methyltransferase RsmD;protein_id=WP_012444764.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3302824 3303330 . + . ID=gene-LLC55_RS15420;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=LLC55_RS15420;old_locus_tag=LLC55_15435 NZ_CP086200.1 Protein Homology CDS 3302824 3303330 . + 0 ID=cds-WP_011259147.1;Parent=gene-LLC55_RS15420;Dbxref=Genbank:WP_011259147.1;Name=WP_011259147.1;Ontology_term=GO:0015937,GO:0004595;gbkey=CDS;gene=coaD;go_function=pantetheine-phosphate adenylyltransferase activity|0004595||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372369.1;locus_tag=LLC55_RS15420;product=pantetheine-phosphate adenylyltransferase;protein_id=WP_011259147.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3303377 3303874 . + . ID=gene-LLC55_RS15425;Name=LLC55_RS15425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15425;old_locus_tag=LLC55_15440 NZ_CP086200.1 Protein Homology CDS 3303377 3303874 . + 0 ID=cds-WP_027703974.1;Parent=gene-LLC55_RS15425;Dbxref=Genbank:WP_027703974.1;Name=WP_027703974.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157277.1;locus_tag=LLC55_RS15425;product=hypothetical protein;protein_id=WP_027703974.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3304106 3304390 . + . ID=gene-LLC55_RS15430;Name=LLC55_RS15430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15430;old_locus_tag=LLC55_15445 NZ_CP086200.1 Protein Homology CDS 3304106 3304390 . + 0 ID=cds-WP_012444765.1;Parent=gene-LLC55_RS15430;Dbxref=Genbank:WP_012444765.1;Name=WP_012444765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502923.1;locus_tag=LLC55_RS15430;product=YfhL family 4Fe-4S dicluster ferredoxin;protein_id=WP_012444765.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3304387 3306180 . + . ID=gene-LLC55_RS15435;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=LLC55_RS15435;old_locus_tag=LLC55_15450 NZ_CP086200.1 Protein Homology CDS 3304387 3306180 . + 0 ID=cds-WP_011408648.1;Parent=gene-LLC55_RS15435;Dbxref=Genbank:WP_011408648.1;Name=WP_011408648.1;Ontology_term=GO:0006750;gbkey=CDS;gene=ggt;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408648.1;locus_tag=LLC55_RS15435;product=gamma-glutamyltransferase;protein_id=WP_011408648.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3306187 3307218 . - . ID=gene-LLC55_RS15440;Name=LLC55_RS15440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15440;old_locus_tag=LLC55_15455 NZ_CP086200.1 Protein Homology CDS 3306187 3307218 . - 0 ID=cds-WP_011259143.1;Parent=gene-LLC55_RS15440;Dbxref=Genbank:WP_011259143.1;Name=WP_011259143.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259143.1;locus_tag=LLC55_RS15440;product=IS630 family transposase;protein_id=WP_011259143.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3307498 3308261 . - . ID=gene-LLC55_RS15445;Name=LLC55_RS15445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15445;old_locus_tag=LLC55_15460 NZ_CP086200.1 Protein Homology CDS 3307946 3308261 . - 0 ID=cds-WP_094187715.1-8;Parent=gene-LLC55_RS15445;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS15445;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3307498 3307946 . - 2 ID=cds-WP_094187715.1-8;Parent=gene-LLC55_RS15445;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS15445;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3308565 3308640 . + . ID=gene-LLC55_RS15450;Name=LLC55_RS15450;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS15450;old_locus_tag=LLC55_15465 NZ_CP086200.1 cmsearch ncRNA 3308565 3308640 . + . ID=rna-LLC55_RS15450;Parent=gene-LLC55_RS15450;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15450;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3308565 3308640 . + . ID=exon-LLC55_RS15450-1;Parent=rna-LLC55_RS15450;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15450;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3308658 3309290 . - . ID=gene-LLC55_RS15455;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=LLC55_RS15455;old_locus_tag=LLC55_15470 NZ_CP086200.1 Protein Homology CDS 3308658 3309290 . - 0 ID=cds-WP_011259142.1;Parent=gene-LLC55_RS15455;Dbxref=Genbank:WP_011259142.1;Name=WP_011259142.1;Ontology_term=GO:0009116,GO:0004845;gbkey=CDS;gene=upp;go_function=uracil phosphoribosyltransferase activity|0004845||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116260.1;locus_tag=LLC55_RS15455;product=uracil phosphoribosyltransferase;protein_id=WP_011259142.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3309441 3309791 . + . ID=gene-LLC55_RS15460;Name=LLC55_RS15460;end_range=3309791,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15460;old_locus_tag=LLC55_15475;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3309441 3309791 . + 0 ID=cds-LLC55_RS15460;Parent=gene-LLC55_RS15460;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3309791,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502926.1;locus_tag=LLC55_RS15460;partial=true;product=TonB-dependent receptor plug domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3309953 3312184 . + . ID=gene-LLC55_RS15465;Name=LLC55_RS15465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15465;old_locus_tag=LLC55_15480;partial=true;pseudo=true;start_range=.,3309953 NZ_CP086200.1 Protein Homology CDS 3309953 3312184 . + 0 ID=cds-LLC55_RS15465;Parent=gene-LLC55_RS15465;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502926.1;locus_tag=LLC55_RS15465;partial=true;product=TonB-dependent receptor;pseudo=true;start_range=.,3309953;transl_table=11 NZ_CP086200.1 RefSeq gene 3312181 3313302 . + . ID=gene-LLC55_RS15470;Name=LLC55_RS15470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15470;old_locus_tag=LLC55_15485 NZ_CP086200.1 Protein Homology CDS 3312181 3313302 . + 0 ID=cds-WP_011259140.1;Parent=gene-LLC55_RS15470;Dbxref=Genbank:WP_011259140.1;Name=WP_011259140.1;Ontology_term=GO:0016158;gbkey=CDS;go_function=3-phytase activity|0016158||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851231.1;locus_tag=LLC55_RS15470;product=phytase;protein_id=WP_011259140.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3313299 3313970 . + . ID=gene-LLC55_RS15475;Name=LLC55_RS15475;end_range=3313970,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15475;old_locus_tag=LLC55_15490;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3313299 3313970 . + 0 ID=cds-LLC55_RS15475;Parent=gene-LLC55_RS15475;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3313970,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051644.1;locus_tag=LLC55_RS15475;partial=true;product=fibronectin type III domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3313990 3315366 . - . ID=gene-LLC55_RS15480;Name=LLC55_RS15480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15480;old_locus_tag=LLC55_15495;pseudo=true NZ_CP086200.1 Protein Homology CDS 3313990 3315366 . - 0 ID=cds-LLC55_RS15480;Parent=gene-LLC55_RS15480;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS15480;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3315484 3316266 . + . ID=gene-LLC55_RS15485;Name=LLC55_RS15485;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15485;old_locus_tag=LLC55_15500;partial=true;pseudo=true;start_range=.,3315484 NZ_CP086200.1 Protein Homology CDS 3315484 3316266 . + 0 ID=cds-LLC55_RS15485;Parent=gene-LLC55_RS15485;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051644.1;locus_tag=LLC55_RS15485;partial=true;product=metallophosphoesterase;pseudo=true;start_range=.,3315484;transl_table=11 NZ_CP086200.1 RefSeq gene 3316657 3317364 . + . ID=gene-LLC55_RS15490;Name=LLC55_RS15490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15490;old_locus_tag=LLC55_15505 NZ_CP086200.1 Protein Homology CDS 3316657 3317364 . + 0 ID=cds-WP_011259129.1;Parent=gene-LLC55_RS15490;Dbxref=Genbank:WP_011259129.1;Name=WP_011259129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157269.1;locus_tag=LLC55_RS15490;product=glycosyltransferase;protein_id=WP_011259129.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3317709 3319205 . - . ID=gene-LLC55_RS15495;Name=LLC55_RS15495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15495;old_locus_tag=LLC55_15510 NZ_CP086200.1 Protein Homology CDS 3317709 3319205 . - 0 ID=cds-WP_011259128.1;Parent=gene-LLC55_RS15495;Dbxref=Genbank:WP_011259128.1;Name=WP_011259128.1;Ontology_term=GO:0008483,GO:0030170;gbkey=CDS;go_function=transaminase activity|0008483||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438074.1;locus_tag=LLC55_RS15495;product=aminotransferase class III-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_011259128.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3319329 3319760 . + . ID=gene-LLC55_RS15500;Name=LLC55_RS15500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15500;old_locus_tag=LLC55_15515 NZ_CP086200.1 Protein Homology CDS 3319329 3319760 . + 0 ID=cds-WP_011259127.1;Parent=gene-LLC55_RS15500;Dbxref=Genbank:WP_011259127.1;Name=WP_011259127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489775.1;locus_tag=LLC55_RS15500;product=Lrp/AsnC family transcriptional regulator;protein_id=WP_011259127.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3319926 3320996 . + . ID=gene-LLC55_RS15505;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=LLC55_RS15505;old_locus_tag=LLC55_15520 NZ_CP086200.1 Protein Homology CDS 3319926 3320996 . + 0 ID=cds-WP_027703908.1;Parent=gene-LLC55_RS15505;Dbxref=Genbank:WP_027703908.1;Name=WP_027703908.1;Ontology_term=GO:0016740,GO:0016853;gbkey=CDS;gene=queA;go_function=transferase activity|0016740||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037521.1;locus_tag=LLC55_RS15505;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=WP_027703908.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3321066 3322211 . + . ID=gene-LLC55_RS15510;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=LLC55_RS15510;old_locus_tag=LLC55_15525 NZ_CP086200.1 Protein Homology CDS 3321066 3322211 . + 0 ID=cds-WP_011259125.1;Parent=gene-LLC55_RS15510;Dbxref=Genbank:WP_011259125.1;Name=WP_011259125.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=queuine tRNA-ribosyltransferase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157264.1;locus_tag=LLC55_RS15510;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_011259125.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3322343 3322696 . + . ID=gene-LLC55_RS15515;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=LLC55_RS15515;old_locus_tag=LLC55_15530 NZ_CP086200.1 Protein Homology CDS 3322343 3322696 . + 0 ID=cds-WP_011259124.1;Parent=gene-LLC55_RS15515;Dbxref=Genbank:WP_011259124.1;Name=WP_011259124.1;Ontology_term=GO:0009306,GO:0015450,GO:0005886;gbkey=CDS;gene=yajC;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157263.1;locus_tag=LLC55_RS15515;product=preprotein translocase subunit YajC;protein_id=WP_011259124.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3322893 3324737 . + . ID=gene-LLC55_RS15520;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=LLC55_RS15520;old_locus_tag=LLC55_15535 NZ_CP086200.1 Protein Homology CDS 3322893 3324737 . + 0 ID=cds-WP_011259123.1;Parent=gene-LLC55_RS15520;Dbxref=Genbank:WP_011259123.1;Name=WP_011259123.1;Ontology_term=GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secD;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917104.1;locus_tag=LLC55_RS15520;product=protein translocase subunit SecD;protein_id=WP_011259123.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3324832 3325800 . + . ID=gene-LLC55_RS15525;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=LLC55_RS15525;old_locus_tag=LLC55_15540 NZ_CP086200.1 Protein Homology CDS 3324832 3325800 . + 0 ID=cds-WP_011259122.1;Parent=gene-LLC55_RS15525;Dbxref=Genbank:WP_011259122.1;Name=WP_011259122.1;Ontology_term=GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secF;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438079.1;locus_tag=LLC55_RS15525;product=protein translocase subunit SecF;protein_id=WP_011259122.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3325881 3326210 . - . ID=gene-LLC55_RS15530;Name=LLC55_RS15530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15530;old_locus_tag=LLC55_15545 NZ_CP086200.1 Protein Homology CDS 3325881 3326210 . - 0 ID=cds-WP_228329613.1;Parent=gene-LLC55_RS15530;Dbxref=Genbank:WP_228329613.1;Name=WP_228329613.1;Ontology_term=GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408636.1;locus_tag=LLC55_RS15530;product=phage integrase N-terminal SAM-like domain-containing protein;protein_id=WP_228329613.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3326511 3327434 . + . ID=gene-LLC55_RS15535;Name=LLC55_RS15535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15535;old_locus_tag=LLC55_15550 NZ_CP086200.1 Protein Homology CDS 3326511 3327434 . + 0 ID=cds-WP_011408635.1;Parent=gene-LLC55_RS15535;Dbxref=Genbank:WP_011408635.1;Name=WP_011408635.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270155.1;locus_tag=LLC55_RS15535;product=IS5 family transposase;protein_id=WP_011408635.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3327683 3328648 . + . ID=gene-LLC55_RS15540;Name=LLC55_RS15540;end_range=3328648,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15540;old_locus_tag=LLC55_15555;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3327683 3328648 . + 0 ID=cds-LLC55_RS15540;Parent=gene-LLC55_RS15540;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=3328648,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011805842.1;locus_tag=LLC55_RS15540;partial=true;product=IS481 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3328648 3328830 . + . ID=gene-LLC55_RS15545;Name=LLC55_RS15545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15545;old_locus_tag=LLC55_15560;partial=true;pseudo=true;start_range=.,3328648 NZ_CP086200.1 Protein Homology CDS 3328648 3328830 . + 0 ID=cds-LLC55_RS15545;Parent=gene-LLC55_RS15545;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS15545;partial=true;product=IS4 family transposase;pseudo=true;start_range=.,3328648;transl_table=11 NZ_CP086200.1 RefSeq gene 3328931 3330250 . - . ID=gene-LLC55_RS15550;Name=LLC55_RS15550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15550;old_locus_tag=LLC55_15565 NZ_CP086200.1 Protein Homology CDS 3328931 3330250 . - 0 ID=cds-WP_109181954.1;Parent=gene-LLC55_RS15550;Dbxref=Genbank:WP_109181954.1;Name=WP_109181954.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS15550;product=IS701 family transposase;protein_id=WP_109181954.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3330500 3331684 . - . ID=gene-LLC55_RS15555;Name=LLC55_RS15555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15555;old_locus_tag=LLC55_15570 NZ_CP086200.1 Protein Homology CDS 3330500 3331684 . - 0 ID=cds-WP_011408397.1-2;Parent=gene-LLC55_RS15555;Dbxref=Genbank:WP_011408397.1;Name=WP_011408397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS15555;product=IS256-like element IS1113 family transposase;protein_id=WP_011408397.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3331735 3332885 . + . ID=gene-LLC55_RS15560;Name=LLC55_RS15560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15560;old_locus_tag=LLC55_15575;pseudo=true NZ_CP086200.1 Protein Homology CDS 3331735 3332885 . + 0 ID=cds-LLC55_RS15560;Parent=gene-LLC55_RS15560;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611322.1;locus_tag=LLC55_RS15560;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3333033 3334352 . - . ID=gene-LLC55_RS15565;Name=LLC55_RS15565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15565;old_locus_tag=LLC55_15580 NZ_CP086200.1 Protein Homology CDS 3333033 3334352 . - 0 ID=cds-WP_011408631.1;Parent=gene-LLC55_RS15565;Dbxref=Genbank:WP_011408631.1;Name=WP_011408631.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS15565;product=IS701-like element ISXo15 family transposase;protein_id=WP_011408631.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3334423 3335058 . - . ID=gene-LLC55_RS15570;Name=rnt;gbkey=Gene;gene=rnt;gene_biotype=protein_coding;locus_tag=LLC55_RS15570;old_locus_tag=LLC55_15585 NZ_CP086200.1 Protein Homology CDS 3334423 3335058 . - 0 ID=cds-WP_075242303.1;Parent=gene-LLC55_RS15570;Dbxref=Genbank:WP_075242303.1;Name=WP_075242303.1;Ontology_term=GO:0006364,GO:0042780,GO:0016896;gbkey=CDS;gene=rnt;go_function=exoribonuclease activity%2C producing 5'-phosphomonoesters|0016896||IEA;go_process=rRNA processing|0006364||IEA,tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036706.1;locus_tag=LLC55_RS15570;product=ribonuclease T;protein_id=WP_075242303.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3335342 3335749 . - . ID=gene-LLC55_RS15575;Name=LLC55_RS15575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15575;old_locus_tag=LLC55_15590 NZ_CP086200.1 Protein Homology CDS 3335342 3335749 . - 0 ID=cds-WP_011259116.1;Parent=gene-LLC55_RS15575;Dbxref=Genbank:WP_011259116.1;Name=WP_011259116.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160317.1;locus_tag=LLC55_RS15575;product=RcnB family protein;protein_id=WP_011259116.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3335882 3336592 . - . ID=gene-LLC55_RS15580;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=LLC55_RS15580;old_locus_tag=LLC55_15595 NZ_CP086200.1 Protein Homology CDS 3335882 3336592 . - 0 ID=cds-WP_011408630.1;Parent=gene-LLC55_RS15580;Dbxref=Genbank:WP_011408630.1;Name=WP_011408630.1;Ontology_term=GO:0051049,GO:0003700;gbkey=CDS;gene=phoU;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transport|0051049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994733.1;locus_tag=LLC55_RS15580;product=phosphate signaling complex protein PhoU;protein_id=WP_011408630.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3336721 3337551 . - . ID=gene-LLC55_RS15585;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=LLC55_RS15585;old_locus_tag=LLC55_15600 NZ_CP086200.1 Protein Homology CDS 3336721 3337551 . - 0 ID=cds-WP_011259114.1;Parent=gene-LLC55_RS15585;Dbxref=Genbank:WP_011259114.1;Name=WP_011259114.1;Ontology_term=GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237787.1;locus_tag=LLC55_RS15585;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_011259114.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3337574 3338443 . - . ID=gene-LLC55_RS15590;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=LLC55_RS15590;old_locus_tag=LLC55_15605 NZ_CP086200.1 Protein Homology CDS 3337574 3338443 . - 0 ID=cds-WP_069959865.1;Parent=gene-LLC55_RS15590;Dbxref=Genbank:WP_069959865.1;Name=WP_069959865.1;Ontology_term=GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstA;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155848.1;locus_tag=LLC55_RS15590;product=phosphate ABC transporter permease PstA;protein_id=WP_069959865.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3338443 3339417 . - . ID=gene-LLC55_RS15595;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=LLC55_RS15595;old_locus_tag=LLC55_15610 NZ_CP086200.1 Protein Homology CDS 3338443 3339417 . - 0 ID=cds-WP_069959864.1;Parent=gene-LLC55_RS15595;Dbxref=Genbank:WP_069959864.1;Name=WP_069959864.1;Ontology_term=GO:0015415,GO:0005886,GO:0055052;gbkey=CDS;gene=pstC;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572163.1;locus_tag=LLC55_RS15595;product=phosphate ABC transporter permease subunit PstC;protein_id=WP_069959864.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3339530 3340621 . - . ID=gene-LLC55_RS15600;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=LLC55_RS15600;old_locus_tag=LLC55_15615 NZ_CP086200.1 Protein Homology CDS 3339530 3340621 . - 0 ID=cds-WP_011408626.1;Parent=gene-LLC55_RS15600;Dbxref=Genbank:WP_011408626.1;Name=WP_011408626.1;Ontology_term=GO:0015415,GO:0042301,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=pstS;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA,phosphate ion binding|0042301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966222.1;locus_tag=LLC55_RS15600;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_011408626.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3340809 3341828 . - . ID=gene-LLC55_RS15605;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=LLC55_RS15605;old_locus_tag=LLC55_15620 NZ_CP086200.1 Protein Homology CDS 3340809 3341828 . - 0 ID=cds-WP_011408625.1;Parent=gene-LLC55_RS15605;Dbxref=Genbank:WP_011408625.1;Name=WP_011408625.1;Ontology_term=GO:0035435,GO:0042301,GO:0043190;gbkey=CDS;gene=pstS;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=phosphate ion binding|0042301||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408625.1;locus_tag=LLC55_RS15605;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_011408625.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3342017 3343267 . - . ID=gene-LLC55_RS15610;Name=LLC55_RS15610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15610;old_locus_tag=LLC55_15625 NZ_CP086200.1 Protein Homology CDS 3342017 3343267 . - 0 ID=cds-WP_011259109.1;Parent=gene-LLC55_RS15610;Dbxref=Genbank:WP_011259109.1;Name=WP_011259109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036714.1;locus_tag=LLC55_RS15610;product=OprO/OprP family phosphate-selective porin;protein_id=WP_011259109.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3343607 3343927 . + . ID=gene-LLC55_RS15615;Name=LLC55_RS15615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15615;old_locus_tag=LLC55_15630 NZ_CP086200.1 Protein Homology CDS 3343607 3343927 . + 0 ID=cds-WP_041182144.1;Parent=gene-LLC55_RS15615;Dbxref=Genbank:WP_041182144.1;Name=WP_041182144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155852.1;locus_tag=LLC55_RS15615;product=hypothetical protein;protein_id=WP_041182144.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3344101 3344474 . + . ID=gene-LLC55_RS15620;Name=LLC55_RS15620;end_range=3344474,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15620;old_locus_tag=LLC55_15635;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3344101 3344474 . + 0 ID=cds-LLC55_RS15620;Parent=gene-LLC55_RS15620;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=3344474,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS15620;partial=true;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3344491 3345726 . - . ID=gene-LLC55_RS15625;Name=LLC55_RS15625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15625;old_locus_tag=LLC55_15640 NZ_CP086200.1 Protein Homology CDS 3344491 3345726 . - 0 ID=cds-WP_011408623.1-2;Parent=gene-LLC55_RS15625;Dbxref=Genbank:WP_011408623.1;Name=WP_011408623.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS15625;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011408623.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3345789 3346184 . + . ID=gene-LLC55_RS15630;Name=LLC55_RS15630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15630;old_locus_tag=LLC55_15645;partial=true;pseudo=true;start_range=.,3345789 NZ_CP086200.1 Protein Homology CDS 3345789 3346184 . + 0 ID=cds-LLC55_RS15630;Parent=gene-LLC55_RS15630;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LLC55_RS15630;partial=true;product=transposase;pseudo=true;start_range=.,3345789;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3346191 3346265 . + . ID=gene-LLC55_RS15635;Name=LLC55_RS15635;end_range=3346265,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15635;old_locus_tag=LLC55_15650;partial=true;pseudo=true;start_range=.,3346191 NZ_CP086200.1 Protein Homology CDS 3346191 3346265 . + 0 ID=cds-LLC55_RS15635;Parent=gene-LLC55_RS15635;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3346265,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366497.1;locus_tag=LLC55_RS15635;partial=true;product=carbonic anhydrase;pseudo=true;start_range=.,3346191;transl_table=11 NZ_CP086200.1 RefSeq gene 3346331 3347299 . + . ID=gene-LLC55_RS15640;Name=LLC55_RS15640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15640;old_locus_tag=LLC55_15655 NZ_CP086200.1 Protein Homology CDS 3346331 3347299 . + 0 ID=cds-WP_011258802.1-13;Parent=gene-LLC55_RS15640;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS15640;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3347429 3348019 . + . ID=gene-LLC55_RS15645;Name=LLC55_RS15645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15645;old_locus_tag=LLC55_15660;partial=true;pseudo=true;start_range=.,3347429 NZ_CP086200.1 Protein Homology CDS 3347429 3348019 . + 0 ID=cds-LLC55_RS15645;Parent=gene-LLC55_RS15645;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366497.1;locus_tag=LLC55_RS15645;partial=true;product=carbonic anhydrase;pseudo=true;start_range=.,3347429;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3348083 3348637 . + . ID=gene-LLC55_RS15650;Name=LLC55_RS15650;end_range=3348637,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15650;old_locus_tag=LLC55_15665;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3348083 3348637 . + 0 ID=cds-LLC55_RS15650;Parent=gene-LLC55_RS15650;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0008272,GO:0015116,GO:0016020;end_range=3348637,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=sulfate transmembrane transporter activity|0015116||IEA;go_process=sulfate transport|0008272||IEA;inference=COORDINATES: protein motif:HMM:NF013109.2;locus_tag=LLC55_RS15650;partial=true;product=SulP family inorganic anion transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3348891 3349127 . + . ID=gene-LLC55_RS15655;Name=LLC55_RS15655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15655;old_locus_tag=LLC55_15670 NZ_CP086200.1 Protein Homology CDS 3348891 3349127 . + 0 ID=cds-WP_229001910.1;Parent=gene-LLC55_RS15655;Dbxref=Genbank:WP_229001910.1;Name=WP_229001910.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024857.2;locus_tag=LLC55_RS15655;product=hypothetical protein;protein_id=WP_229001910.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3349330 3350040 . - . ID=gene-LLC55_RS15660;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=LLC55_RS15660;old_locus_tag=LLC55_15675 NZ_CP086200.1 Protein Homology CDS 3349330 3350040 . - 0 ID=cds-WP_011259107.1;Parent=gene-LLC55_RS15660;Dbxref=Genbank:WP_011259107.1;Name=WP_011259107.1;Ontology_term=GO:0006281,GO:0003906;gbkey=CDS;gene=nth;go_function=DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502811.1;locus_tag=LLC55_RS15660;product=endonuclease III;protein_id=WP_011259107.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3350037 3350417 . - . ID=gene-LLC55_RS15665;Name=LLC55_RS15665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15665;old_locus_tag=LLC55_15680 NZ_CP086200.1 Protein Homology CDS 3350037 3350417 . - 0 ID=cds-WP_011408619.1;Parent=gene-LLC55_RS15665;Dbxref=Genbank:WP_011408619.1;Name=WP_011408619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502812.1;locus_tag=LLC55_RS15665;product=hypothetical protein;protein_id=WP_011408619.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3350426 3351208 . - . ID=gene-LLC55_RS15670;Name=LLC55_RS15670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15670;old_locus_tag=LLC55_15685 NZ_CP086200.1 Protein Homology CDS 3350426 3351208 . - 0 ID=cds-WP_011408618.1;Parent=gene-LLC55_RS15670;Dbxref=Genbank:WP_011408618.1;Name=WP_011408618.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966234.1;locus_tag=LLC55_RS15670;product=enoyl-CoA hydratase-related protein;protein_id=WP_011408618.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3351372 3352070 . + . ID=gene-LLC55_RS15675;Name=LLC55_RS15675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15675;old_locus_tag=LLC55_15690 NZ_CP086200.1 Protein Homology CDS 3351372 3352070 . + 0 ID=cds-WP_011408617.1;Parent=gene-LLC55_RS15675;Dbxref=Genbank:WP_011408617.1;Name=WP_011408617.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804447.1;locus_tag=LLC55_RS15675;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_011408617.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3352063 3352308 . - . ID=gene-LLC55_RS15680;Name=LLC55_RS15680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15680;old_locus_tag=LLC55_15695 NZ_CP086200.1 GeneMarkS-2+ CDS 3352063 3352308 . - 0 ID=cds-WP_113138914.1;Parent=gene-LLC55_RS15680;Dbxref=Genbank:WP_113138914.1;Name=WP_113138914.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS15680;product=hypothetical protein;protein_id=WP_113138914.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3352321 3353028 . + . ID=gene-LLC55_RS15685;Name=LLC55_RS15685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15685;old_locus_tag=LLC55_15700 NZ_CP086200.1 Protein Homology CDS 3352321 3353028 . + 0 ID=cds-WP_229001911.1;Parent=gene-LLC55_RS15685;Dbxref=Genbank:WP_229001911.1;Name=WP_229001911.1;Ontology_term=GO:0000287,GO:0010945;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,CoA pyrophosphatase activity|0010945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502816.1;locus_tag=LLC55_RS15685;product=CoA pyrophosphatase;protein_id=WP_229001911.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3353025 3353897 . + . ID=gene-LLC55_RS15690;Name=LLC55_RS15690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15690;old_locus_tag=LLC55_15705 NZ_CP086200.1 Protein Homology CDS 3353025 3353897 . + 0 ID=cds-WP_011259102.1;Parent=gene-LLC55_RS15690;Dbxref=Genbank:WP_011259102.1;Name=WP_011259102.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926214.1;locus_tag=LLC55_RS15690;product=sulfurtransferase;protein_id=WP_011259102.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3353986 3354939 . + . ID=gene-LLC55_RS15695;Name=LLC55_RS15695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15695;old_locus_tag=LLC55_15710 NZ_CP086200.1 Protein Homology CDS 3353986 3354939 . + 0 ID=cds-WP_011259101.1;Parent=gene-LLC55_RS15695;Dbxref=Genbank:WP_011259101.1;Name=WP_011259101.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004429239.1;locus_tag=LLC55_RS15695;product=DUF1684 domain-containing protein;protein_id=WP_011259101.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3355016 3355591 . - . ID=gene-LLC55_RS15700;Name=LLC55_RS15700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15700;old_locus_tag=LLC55_15715 NZ_CP086200.1 Protein Homology CDS 3355016 3355591 . - 0 ID=cds-WP_011408613.1;Parent=gene-LLC55_RS15700;Dbxref=Genbank:WP_011408613.1;Name=WP_011408613.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302791.1;locus_tag=LLC55_RS15700;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_011408613.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3355615 3356106 . + . ID=gene-LLC55_RS15705;Name=LLC55_RS15705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15705;old_locus_tag=LLC55_15720 NZ_CP086200.1 Protein Homology CDS 3355615 3356106 . + 0 ID=cds-WP_011408612.1;Parent=gene-LLC55_RS15705;Dbxref=Genbank:WP_011408612.1;Name=WP_011408612.1;Ontology_term=GO:0003824,GO:0030151,GO:0030170;gbkey=CDS;go_function=catalytic activity|0003824||IEA,molybdenum ion binding|0030151||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089837.1;locus_tag=LLC55_RS15705;product=MOSC domain-containing protein;protein_id=WP_011408612.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3356103 3356630 . + . ID=gene-LLC55_RS15710;Name=LLC55_RS15710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15710;old_locus_tag=LLC55_15725 NZ_CP086200.1 Protein Homology CDS 3356103 3356630 . + 0 ID=cds-WP_011259099.1;Parent=gene-LLC55_RS15710;Dbxref=Genbank:WP_011259099.1;Name=WP_011259099.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966252.1;locus_tag=LLC55_RS15710;product=alpha/beta hydrolase;protein_id=WP_011259099.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3356671 3357177 . + . ID=gene-LLC55_RS15715;Name=LLC55_RS15715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15715;old_locus_tag=LLC55_15730 NZ_CP086200.1 Protein Homology CDS 3356671 3357177 . + 0 ID=cds-WP_011259098.1;Parent=gene-LLC55_RS15715;Dbxref=Genbank:WP_011259098.1;Name=WP_011259098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004429248.1;locus_tag=LLC55_RS15715;product=N-acetyltransferase;protein_id=WP_011259098.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3357363 3358973 . + . ID=gene-LLC55_RS15720;Name=LLC55_RS15720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15720;old_locus_tag=LLC55_15735;pseudo=true NZ_CP086200.1 Protein Homology CDS 3357363 3358973 . + 0 ID=cds-LLC55_RS15720;Parent=gene-LLC55_RS15720;Note=frameshifted%3B internal stop;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160314.1;locus_tag=LLC55_RS15720;product=ATP-binding cassette domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3358952 3359143 . + . ID=gene-LLC55_RS15725;Name=LLC55_RS15725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15725;old_locus_tag=LLC55_15740 NZ_CP086200.1 Protein Homology CDS 3358952 3359143 . + 0 ID=cds-WP_027703372.1;Parent=gene-LLC55_RS15725;Dbxref=Genbank:WP_027703372.1;Name=WP_027703372.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155866.1;locus_tag=LLC55_RS15725;product=hypothetical protein;protein_id=WP_027703372.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3359140 3361275 . + . ID=gene-LLC55_RS15730;Name=rlmKL;gbkey=Gene;gene=rlmKL;gene_biotype=protein_coding;locus_tag=LLC55_RS15730;old_locus_tag=LLC55_15745 NZ_CP086200.1 Protein Homology CDS 3359140 3361275 . + 0 ID=cds-WP_011408610.1;Parent=gene-LLC55_RS15730;Dbxref=Genbank:WP_011408610.1;Name=WP_011408610.1;Ontology_term=GO:0031167,GO:0003723,GO:0008990;gbkey=CDS;gene=rlmKL;go_function=RNA binding|0003723||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902459.1;locus_tag=LLC55_RS15730;product=bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;protein_id=WP_011408610.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3361485 3361561 . + . ID=gene-LLC55_RS15735;Name=LLC55_RS15735;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS15735;old_locus_tag=LLC55_15750 NZ_CP086200.1 cmsearch ncRNA 3361485 3361561 . + . ID=rna-LLC55_RS15735;Parent=gene-LLC55_RS15735;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15735;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3361485 3361561 . + . ID=exon-LLC55_RS15735-1;Parent=rna-LLC55_RS15735;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15735;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3361759 3362535 . + . ID=gene-LLC55_RS15740;Name=LLC55_RS15740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15740;old_locus_tag=LLC55_15755 NZ_CP086200.1 Protein Homology CDS 3361759 3362535 . + 0 ID=cds-WP_011408609.1;Parent=gene-LLC55_RS15740;Dbxref=Genbank:WP_011408609.1;Name=WP_011408609.1;Ontology_term=GO:0006741,GO:0019674,GO:0003951;gbkey=CDS;go_function=NAD+ kinase activity|0003951||IEA;go_process=NADP biosynthetic process|0006741||IEA,NAD metabolic process|0019674||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919766.1;locus_tag=LLC55_RS15740;product=NAD kinase;protein_id=WP_011408609.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3362703 3363659 . + . ID=gene-LLC55_RS15745;Name=LLC55_RS15745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15745;old_locus_tag=LLC55_15760 NZ_CP086200.1 Protein Homology CDS 3362703 3363659 . + 0 ID=cds-WP_011259093.1;Parent=gene-LLC55_RS15745;Dbxref=Genbank:WP_011259093.1;Name=WP_011259093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366538.1;locus_tag=LLC55_RS15745;product=5'-nucleotidase;protein_id=WP_011259093.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3363680 3364240 . - . ID=gene-LLC55_RS15750;Name=LLC55_RS15750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15750;old_locus_tag=LLC55_15765 NZ_CP086200.1 Protein Homology CDS 3363680 3364240 . - 0 ID=cds-WP_011259092.1;Parent=gene-LLC55_RS15750;Dbxref=Genbank:WP_011259092.1;Name=WP_011259092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259092.1;locus_tag=LLC55_RS15750;product=DUF2939 domain-containing protein;protein_id=WP_011259092.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3364282 3365301 . - . ID=gene-LLC55_RS15755;Name=LLC55_RS15755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15755;old_locus_tag=LLC55_15770 NZ_CP086200.1 Protein Homology CDS 3364282 3365301 . - 0 ID=cds-WP_011259091.1;Parent=gene-LLC55_RS15755;Dbxref=Genbank:WP_011259091.1;Name=WP_011259091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304892.1;locus_tag=LLC55_RS15755;product=aldo/keto reductase;protein_id=WP_011259091.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3365274 3365960 . - . ID=gene-LLC55_RS15760;Name=LLC55_RS15760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15760;old_locus_tag=LLC55_15775 NZ_CP086200.1 Protein Homology CDS 3365274 3365960 . - 0 ID=cds-WP_011259090.1;Parent=gene-LLC55_RS15760;Dbxref=Genbank:WP_011259090.1;Name=WP_011259090.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996685.1;locus_tag=LLC55_RS15760;product=DUF2461 domain-containing protein;protein_id=WP_011259090.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3365957 3367402 . - . ID=gene-LLC55_RS15765;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=LLC55_RS15765;old_locus_tag=LLC55_15780 NZ_CP086200.1 Protein Homology CDS 3365957 3367402 . - 0 ID=cds-WP_011259089.1;Parent=gene-LLC55_RS15765;Dbxref=Genbank:WP_011259089.1;Name=WP_011259089.1;Ontology_term=GO:0006281,GO:0000175,GO:0003676,GO:0008852;gbkey=CDS;gene=sbcB;go_function=3'-5'-exoribonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA,exodeoxyribonuclease I activity|0008852||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366550.1;locus_tag=LLC55_RS15765;product=exodeoxyribonuclease I;protein_id=WP_011259089.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3367706 3369073 . - . ID=gene-LLC55_RS15770;Name=LLC55_RS15770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15770;old_locus_tag=LLC55_15785 NZ_CP086200.1 Protein Homology CDS 3367706 3369073 . - 0 ID=cds-WP_011408607.1;Parent=gene-LLC55_RS15770;Dbxref=Genbank:WP_011408607.1;Name=WP_011408607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576314.1;locus_tag=LLC55_RS15770;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_011408607.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3369245 3370516 . - . ID=gene-LLC55_RS15775;Name=kynU;gbkey=Gene;gene=kynU;gene_biotype=protein_coding;locus_tag=LLC55_RS15775;old_locus_tag=LLC55_15790 NZ_CP086200.1 Protein Homology CDS 3369245 3370516 . - 0 ID=cds-WP_011408606.1;Parent=gene-LLC55_RS15775;Dbxref=Genbank:WP_011408606.1;Name=WP_011408606.1;Ontology_term=GO:0019441,GO:0030429;gbkey=CDS;gene=kynU;go_function=kynureninase activity|0030429||IEA;go_process=tryptophan catabolic process to kynurenine|0019441||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966269.1;locus_tag=LLC55_RS15775;product=kynureninase;protein_id=WP_011408606.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3370550 3372727 . - . ID=gene-LLC55_RS15780;Name=LLC55_RS15780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15780;old_locus_tag=LLC55_15795;pseudo=true NZ_CP086200.1 Protein Homology CDS 3370550 3372727 . - 0 ID=cds-LLC55_RS15780;Parent=gene-LLC55_RS15780;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300684.1;locus_tag=LLC55_RS15780;product=FUSC family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3372740 3373270 . - . ID=gene-LLC55_RS15785;Name=LLC55_RS15785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15785;old_locus_tag=LLC55_15800 NZ_CP086200.1 Protein Homology CDS 3372740 3373270 . - 0 ID=cds-WP_024744799.1;Parent=gene-LLC55_RS15785;Dbxref=Genbank:WP_024744799.1;Name=WP_024744799.1;Ontology_term=GO:0000334,GO:0005506;gbkey=CDS;go_function=3-hydroxyanthranilate 3%2C4-dioxygenase activity|0000334||IEA,iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155876.1;locus_tag=LLC55_RS15785;product=3-hydroxyanthranilate 3%2C4-dioxygenase;protein_id=WP_024744799.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3373359 3374021 . - . ID=gene-LLC55_RS15790;Name=can;gbkey=Gene;gene=can;gene_biotype=protein_coding;locus_tag=LLC55_RS15790;old_locus_tag=LLC55_15805 NZ_CP086200.1 Protein Homology CDS 3373359 3374021 . - 0 ID=cds-WP_011408603.1;Parent=gene-LLC55_RS15790;Dbxref=Genbank:WP_011408603.1;Name=WP_011408603.1;Ontology_term=GO:0015976,GO:0004089,GO:0008270;gbkey=CDS;gene=can;go_function=carbonate dehydratase activity|0004089||IEA,zinc ion binding|0008270||IEA;go_process=carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902447.1;locus_tag=LLC55_RS15790;product=carbonate dehydratase;protein_id=WP_011408603.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3374108 3374746 . - . ID=gene-LLC55_RS15795;Name=LLC55_RS15795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15795;old_locus_tag=LLC55_15810;pseudo=true NZ_CP086200.1 Protein Homology CDS 3374108 3374746 . - 0 ID=cds-LLC55_RS15795;Parent=gene-LLC55_RS15795;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379580.1;locus_tag=LLC55_RS15795;product=FMN-binding negative transcriptional regulator;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3374748 3375074 . - . ID=gene-LLC55_RS15800;Name=LLC55_RS15800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15800;old_locus_tag=LLC55_15815 NZ_CP086200.1 Protein Homology CDS 3374748 3375074 . - 0 ID=cds-WP_011408600.1;Parent=gene-LLC55_RS15800;Dbxref=Genbank:WP_011408600.1;Name=WP_011408600.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158152.1;locus_tag=LLC55_RS15800;product=hypothetical protein;protein_id=WP_011408600.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3375071 3375376 . - . ID=gene-LLC55_RS15805;Name=LLC55_RS15805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15805;old_locus_tag=LLC55_15820 NZ_CP086200.1 Protein Homology CDS 3375071 3375376 . - 0 ID=cds-WP_011408599.1;Parent=gene-LLC55_RS15805;Dbxref=Genbank:WP_011408599.1;Name=WP_011408599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158153.1;locus_tag=LLC55_RS15805;product=hypothetical protein;protein_id=WP_011408599.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3375373 3375630 . - . ID=gene-LLC55_RS15810;Name=LLC55_RS15810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15810;old_locus_tag=LLC55_15825 NZ_CP086200.1 Protein Homology CDS 3375373 3375630 . - 0 ID=cds-WP_011259080.1;Parent=gene-LLC55_RS15810;Dbxref=Genbank:WP_011259080.1;Name=WP_011259080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300679.1;locus_tag=LLC55_RS15810;product=hypothetical protein;protein_id=WP_011259080.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3375632 3377026 . - . ID=gene-LLC55_RS15815;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;locus_tag=LLC55_RS15815;old_locus_tag=LLC55_15830 NZ_CP086200.1 Protein Homology CDS 3375632 3377026 . - 0 ID=cds-WP_011408598.1;Parent=gene-LLC55_RS15815;Dbxref=Genbank:WP_011408598.1;Name=WP_011408598.1;Ontology_term=GO:0006421,GO:0004816,GO:0005524;gbkey=CDS;gene=asnS;go_function=asparagine-tRNA ligase activity|0004816||IEA,ATP binding|0005524||IEA;go_process=asparaginyl-tRNA aminoacylation|0006421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237793.1;locus_tag=LLC55_RS15815;product=asparagine--tRNA ligase;protein_id=WP_011408598.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3377233 3377571 . + . ID=gene-LLC55_RS15820;Name=LLC55_RS15820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15820;old_locus_tag=LLC55_15835 NZ_CP086200.1 Protein Homology CDS 3377233 3377571 . + 0 ID=cds-WP_011408597.1;Parent=gene-LLC55_RS15820;Dbxref=Genbank:WP_011408597.1;Name=WP_011408597.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966300.1;locus_tag=LLC55_RS15820;product=iron-sulfur cluster assembly accessory protein;protein_id=WP_011408597.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3377927 3378358 . + . ID=gene-LLC55_RS15825;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=LLC55_RS15825;old_locus_tag=LLC55_15840 NZ_CP086200.1 Protein Homology CDS 3377927 3378358 . + 0 ID=cds-WP_011259077.1;Parent=gene-LLC55_RS15825;Dbxref=Genbank:WP_011259077.1;Name=WP_011259077.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991245.1;locus_tag=LLC55_RS15825;product=30S ribosomal protein S6;protein_id=WP_011259077.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3378370 3378600 . + . ID=gene-LLC55_RS15830;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=LLC55_RS15830;old_locus_tag=LLC55_15845 NZ_CP086200.1 Protein Homology CDS 3378370 3378600 . + 0 ID=cds-WP_005991243.1;Parent=gene-LLC55_RS15830;Dbxref=Genbank:WP_005991243.1;Name=WP_005991243.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804494.1;locus_tag=LLC55_RS15830;product=30S ribosomal protein S18;protein_id=WP_005991243.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3378853 3379302 . + . ID=gene-LLC55_RS15835;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=LLC55_RS15835;old_locus_tag=LLC55_15850 NZ_CP086200.1 Protein Homology CDS 3378853 3379302 . + 0 ID=cds-WP_011259076.1;Parent=gene-LLC55_RS15835;Dbxref=Genbank:WP_011259076.1;Name=WP_011259076.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplI;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379584.1;locus_tag=LLC55_RS15835;product=50S ribosomal protein L9;protein_id=WP_011259076.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3379512 3383015 . + . ID=gene-LLC55_RS15840;Name=smc;gbkey=Gene;gene=smc;gene_biotype=protein_coding;locus_tag=LLC55_RS15840;old_locus_tag=LLC55_15855 NZ_CP086200.1 Protein Homology CDS 3379512 3383015 . + 0 ID=cds-WP_011408596.1;Parent=gene-LLC55_RS15840;Dbxref=Genbank:WP_011408596.1;Name=WP_011408596.1;Ontology_term=GO:0007059,GO:0030261,GO:0005524;gbkey=CDS;gene=smc;go_function=ATP binding|0005524||IEA;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451583.1;locus_tag=LLC55_RS15840;product=chromosome segregation protein SMC;protein_id=WP_011408596.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3383072 3383803 . + . ID=gene-LLC55_RS15845;Name=zipA;gbkey=Gene;gene=zipA;gene_biotype=protein_coding;locus_tag=LLC55_RS15845;old_locus_tag=LLC55_15860 NZ_CP086200.1 Protein Homology CDS 3383072 3383803 . + 0 ID=cds-WP_011259074.1;Parent=gene-LLC55_RS15845;Dbxref=Genbank:WP_011259074.1;Name=WP_011259074.1;Ontology_term=GO:0000917,GO:0005515;gbkey=CDS;gene=zipA;go_function=protein binding|0005515||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903841.1;locus_tag=LLC55_RS15845;product=cell division protein ZipA;protein_id=WP_011259074.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3383810 3384191 . + . ID=gene-LLC55_RS15850;Name=LLC55_RS15850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15850;old_locus_tag=LLC55_15865;pseudo=true NZ_CP086200.1 Protein Homology CDS 3383810 3384191 . + 0 ID=cds-LLC55_RS15850;Parent=gene-LLC55_RS15850;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158159.1;locus_tag=LLC55_RS15850;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3384362 3384589 . - . ID=gene-LLC55_RS15855;Name=LLC55_RS15855;end_range=3384589,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15855;old_locus_tag=LLC55_15870;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3384362 3384589 . - 0 ID=cds-LLC55_RS15855;Parent=gene-LLC55_RS15855;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=3384589,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159896.1;locus_tag=LLC55_RS15855;partial=true;product=aminotransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3384659 3387184 . + . ID=gene-LLC55_RS15860;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=LLC55_RS15860;old_locus_tag=LLC55_15875 NZ_CP086200.1 Protein Homology CDS 3384659 3387184 . + 0 ID=cds-WP_011408594.1;Parent=gene-LLC55_RS15860;Dbxref=Genbank:WP_011408594.1;Name=WP_011408594.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502845.1;locus_tag=LLC55_RS15860;product=NAD-dependent DNA ligase LigA;protein_id=WP_011408594.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3387181 3388143 . + . ID=gene-LLC55_RS15865;Name=epmA;gbkey=Gene;gene=epmA;gene_biotype=protein_coding;locus_tag=LLC55_RS15865;old_locus_tag=LLC55_15880 NZ_CP086200.1 Protein Homology CDS 3387181 3388143 . + 0 ID=cds-WP_011259071.1;Parent=gene-LLC55_RS15865;Dbxref=Genbank:WP_011259071.1;Name=WP_011259071.1;Ontology_term=GO:0006430,GO:0000166,GO:0004824,GO:0005524;gbkey=CDS;gene=epmA;go_function=nucleotide binding|0000166||IEA,lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158162.1;locus_tag=LLC55_RS15865;product=EF-P lysine aminoacylase EpmA;protein_id=WP_011259071.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3388253 3388939 . + . ID=gene-LLC55_RS15870;Name=LLC55_RS15870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15870;old_locus_tag=LLC55_15885 NZ_CP086200.1 Protein Homology CDS 3388253 3388939 . + 0 ID=cds-WP_041182140.1;Parent=gene-LLC55_RS15870;Dbxref=Genbank:WP_041182140.1;Name=WP_041182140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089862.1;locus_tag=LLC55_RS15870;product=DUF3011 domain-containing protein;protein_id=WP_041182140.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3389002 3389077 . + . ID=gene-LLC55_RS15875;Name=LLC55_RS15875;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS15875;old_locus_tag=LLC55_15890 NZ_CP086200.1 cmsearch ncRNA 3389002 3389077 . + . ID=rna-LLC55_RS15875;Parent=gene-LLC55_RS15875;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15875;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3389002 3389077 . + . ID=exon-LLC55_RS15875-1;Parent=rna-LLC55_RS15875;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS15875;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3389140 3390204 . + . ID=gene-LLC55_RS15880;Name=mtnA;gbkey=Gene;gene=mtnA;gene_biotype=protein_coding;locus_tag=LLC55_RS15880;old_locus_tag=LLC55_15895 NZ_CP086200.1 Protein Homology CDS 3389140 3390204 . + 0 ID=cds-WP_011259069.1;Parent=gene-LLC55_RS15880;Dbxref=Genbank:WP_011259069.1;Name=WP_011259069.1;Ontology_term=GO:0019509,GO:0046523;gbkey=CDS;gene=mtnA;go_function=S-methyl-5-thioribose-1-phosphate isomerase activity|0046523||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051043.1;locus_tag=LLC55_RS15880;product=S-methyl-5-thioribose-1-phosphate isomerase;protein_id=WP_011259069.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3390415 3393111 . + . ID=gene-LLC55_RS15885;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=LLC55_RS15885;old_locus_tag=LLC55_15900 NZ_CP086200.1 Protein Homology CDS 3390415 3393111 . + 0 ID=cds-WP_011259068.1;Parent=gene-LLC55_RS15885;Dbxref=Genbank:WP_011259068.1;Name=WP_011259068.1;Ontology_term=GO:0006259,GO:0006265,GO:0003677,GO:0003916,GO:0003918,GO:0005524;gbkey=CDS;gene=gyrA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA metabolic process|0006259||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158164.1;locus_tag=LLC55_RS15885;product=DNA gyrase subunit A;protein_id=WP_011259068.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3393244 3394025 . + . ID=gene-LLC55_RS15890;Name=LLC55_RS15890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15890;old_locus_tag=LLC55_15905;pseudo=true NZ_CP086200.1 Protein Homology CDS 3393244 3394025 . + 0 ID=cds-LLC55_RS15890;Parent=gene-LLC55_RS15890;Note=frameshifted;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558219.1;locus_tag=LLC55_RS15890;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3394147 3394899 . - . ID=gene-LLC55_RS15895;Name=LLC55_RS15895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15895;old_locus_tag=LLC55_15910 NZ_CP086200.1 Protein Homology CDS 3394147 3394899 . - 0 ID=cds-WP_012444817.1;Parent=gene-LLC55_RS15895;Dbxref=Genbank:WP_012444817.1;Name=WP_012444817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503761.1;locus_tag=LLC55_RS15895;product=hypothetical protein;protein_id=WP_012444817.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3395029 3396123 . - . ID=gene-LLC55_RS15900;Name=LLC55_RS15900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15900;old_locus_tag=LLC55_15915 NZ_CP086200.1 Protein Homology CDS 3395029 3396123 . - 0 ID=cds-WP_011408590.1;Parent=gene-LLC55_RS15900;Dbxref=Genbank:WP_011408590.1;Name=WP_011408590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408590.1;locus_tag=LLC55_RS15900;product=acyltransferase;protein_id=WP_011408590.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3396516 3398183 . - . ID=gene-LLC55_RS15905;Name=LLC55_RS15905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15905;old_locus_tag=LLC55_15920 NZ_CP086200.1 Protein Homology CDS 3396516 3398183 . - 0 ID=cds-WP_011259063.1;Parent=gene-LLC55_RS15905;Dbxref=Genbank:WP_011259063.1;Name=WP_011259063.1;Ontology_term=GO:0016153;gbkey=CDS;go_function=urocanate hydratase activity|0016153||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165198.1;locus_tag=LLC55_RS15905;product=urocanate hydratase;protein_id=WP_011259063.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3398200 3399057 . - . ID=gene-LLC55_RS15910;Name=hutG;gbkey=Gene;gene=hutG;gene_biotype=protein_coding;locus_tag=LLC55_RS15910;old_locus_tag=LLC55_15925 NZ_CP086200.1 Protein Homology CDS 3398200 3399057 . - 0 ID=cds-WP_011259062.1;Parent=gene-LLC55_RS15910;Dbxref=Genbank:WP_011259062.1;Name=WP_011259062.1;Ontology_term=GO:0019557,GO:0050129;gbkey=CDS;gene=hutG;go_function=N-formylglutamate deformylase activity|0050129||IEA;go_process=histidine catabolic process to glutamate and formate|0019557||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485831.1;locus_tag=LLC55_RS15910;product=N-formylglutamate deformylase;protein_id=WP_011259062.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3399236 3400777 . - . ID=gene-LLC55_RS15915;Name=hutH;gbkey=Gene;gene=hutH;gene_biotype=protein_coding;locus_tag=LLC55_RS15915;old_locus_tag=LLC55_15930 NZ_CP086200.1 Protein Homology CDS 3399236 3400777 . - 0 ID=cds-WP_069959863.1;Parent=gene-LLC55_RS15915;Dbxref=Genbank:WP_069959863.1;Name=WP_069959863.1;Ontology_term=GO:0006548,GO:0004397;gbkey=CDS;gene=hutH;go_function=histidine ammonia-lyase activity|0004397||IEA;go_process=histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158168.1;locus_tag=LLC55_RS15915;product=histidine ammonia-lyase;protein_id=WP_069959863.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3400791 3401996 . - . ID=gene-LLC55_RS15920;Name=hutI;gbkey=Gene;gene=hutI;gene_biotype=protein_coding;locus_tag=LLC55_RS15920;old_locus_tag=LLC55_15935 NZ_CP086200.1 Protein Homology CDS 3400791 3401996 . - 0 ID=cds-WP_011259060.1;Parent=gene-LLC55_RS15920;Dbxref=Genbank:WP_011259060.1;Name=WP_011259060.1;Ontology_term=GO:0006548,GO:0050480;gbkey=CDS;gene=hutI;go_function=imidazolonepropionase activity|0050480||IEA;go_process=histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158169.1;locus_tag=LLC55_RS15920;product=imidazolonepropionase;protein_id=WP_011259060.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3402057 3403427 . + . ID=gene-LLC55_RS15925;Name=LLC55_RS15925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15925;old_locus_tag=LLC55_15940 NZ_CP086200.1 Protein Homology CDS 3402057 3403427 . + 0 ID=cds-WP_012444821.1;Parent=gene-LLC55_RS15925;Dbxref=Genbank:WP_012444821.1;Name=WP_012444821.1;Ontology_term=GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159894.1;locus_tag=LLC55_RS15925;product=formimidoylglutamate deiminase;protein_id=WP_012444821.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3403752 3404489 . + . ID=gene-LLC55_RS15930;Name=hutC;gbkey=Gene;gene=hutC;gene_biotype=protein_coding;locus_tag=LLC55_RS15930;old_locus_tag=LLC55_15945 NZ_CP086200.1 Protein Homology CDS 3403752 3404489 . + 0 ID=cds-WP_075242359.1;Parent=gene-LLC55_RS15930;Dbxref=Genbank:WP_075242359.1;Name=WP_075242359.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=hutC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158172.1;locus_tag=LLC55_RS15930;product=histidine utilization repressor;protein_id=WP_075242359.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3404646 3405647 . - . ID=gene-LLC55_RS15935;Name=LLC55_RS15935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15935;old_locus_tag=LLC55_15950 NZ_CP086200.1 Protein Homology CDS 3404646 3405647 . - 0 ID=cds-WP_027703736.1;Parent=gene-LLC55_RS15935;Dbxref=Genbank:WP_027703736.1;Name=WP_027703736.1;Ontology_term=GO:0009307,GO:0003677,GO:0004519;gbkey=CDS;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347042.1;locus_tag=LLC55_RS15935;product=restriction endonuclease;protein_id=WP_027703736.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3406214 3406777 . - . ID=gene-LLC55_RS15940;Name=LLC55_RS15940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15940;old_locus_tag=LLC55_15955 NZ_CP086200.1 Protein Homology CDS 3406214 3406777 . - 0 ID=cds-WP_011259056.1;Parent=gene-LLC55_RS15940;Dbxref=Genbank:WP_011259056.1;Name=WP_011259056.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158174.1;locus_tag=LLC55_RS15940;product=phasin family protein;protein_id=WP_011259056.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3406939 3407214 . - . ID=gene-LLC55_RS15945;Name=LLC55_RS15945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15945;old_locus_tag=LLC55_15960 NZ_CP086200.1 Protein Homology CDS 3406939 3407214 . - 0 ID=cds-WP_011259055.1;Parent=gene-LLC55_RS15945;Dbxref=Genbank:WP_011259055.1;Name=WP_011259055.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503751.1;locus_tag=LLC55_RS15945;product=polyhydroxyalkanoic acid system family protein;protein_id=WP_011259055.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3407455 3408264 . + . ID=gene-LLC55_RS15950;Name=LLC55_RS15950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15950;old_locus_tag=LLC55_15965 NZ_CP086200.1 Protein Homology CDS 3407455 3408264 . + 0 ID=cds-WP_012444823.1;Parent=gene-LLC55_RS15950;Dbxref=Genbank:WP_012444823.1;Name=WP_012444823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904651.1;locus_tag=LLC55_RS15950;product=FHA domain-containing protein;protein_id=WP_012444823.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3408206 3408862 . - . ID=gene-LLC55_RS15955;Name=msrQ;gbkey=Gene;gene=msrQ;gene_biotype=protein_coding;locus_tag=LLC55_RS15955;old_locus_tag=LLC55_15970 NZ_CP086200.1 Protein Homology CDS 3408206 3408862 . - 0 ID=cds-WP_011408583.1;Parent=gene-LLC55_RS15955;Dbxref=Genbank:WP_011408583.1;Name=WP_011408583.1;gbkey=CDS;gene=msrQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036769.1;locus_tag=LLC55_RS15955;product=protein-methionine-sulfoxide reductase heme-binding subunit MsrQ;protein_id=WP_011408583.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3409162 3410130 . - . ID=gene-LLC55_RS15960;Name=msrP;gbkey=Gene;gene=msrP;gene_biotype=protein_coding;locus_tag=LLC55_RS15960;old_locus_tag=LLC55_15975 NZ_CP086200.1 Protein Homology CDS 3409162 3410130 . - 0 ID=cds-WP_011408582.1;Parent=gene-LLC55_RS15960;Dbxref=Genbank:WP_011408582.1;Name=WP_011408582.1;Ontology_term=GO:0030091,GO:0016667,GO:0043546;gbkey=CDS;gene=msrP;go_function=oxidoreductase activity%2C acting on a sulfur group of donors|0016667||IEA,molybdopterin cofactor binding|0043546||IEA;go_process=protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914864.1;locus_tag=LLC55_RS15960;product=protein-methionine-sulfoxide reductase catalytic subunit MsrP;protein_id=WP_011408582.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3410305 3411390 . + . ID=gene-LLC55_RS15965;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=LLC55_RS15965;old_locus_tag=LLC55_15980 NZ_CP086200.1 Protein Homology CDS 3410305 3411390 . + 0 ID=cds-WP_011259052.1;Parent=gene-LLC55_RS15965;Dbxref=Genbank:WP_011259052.1;Name=WP_011259052.1;Ontology_term=GO:0006564,GO:0004648;gbkey=CDS;gene=serC;go_function=O-phospho-L-serine:2-oxoglutarate aminotransferase activity|0004648||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300927.1;locus_tag=LLC55_RS15965;product=phosphoserine transaminase;protein_id=WP_011259052.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3411439 3412647 . + . ID=gene-LLC55_RS15970;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=LLC55_RS15970;old_locus_tag=LLC55_15985 NZ_CP086200.1 Protein Homology CDS 3411439 3412647 . + 0 ID=cds-WP_011259051.1;Parent=gene-LLC55_RS15970;Dbxref=Genbank:WP_011259051.1;Name=WP_011259051.1;Ontology_term=GO:0009094,GO:0004664;gbkey=CDS;gene=pheA;go_function=prephenate dehydratase activity|0004664||IEA;go_process=L-phenylalanine biosynthetic process|0009094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300926.1;locus_tag=LLC55_RS15970;product=prephenate dehydratase;protein_id=WP_011259051.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3412769 3414091 . + . ID=gene-LLC55_RS15975;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=LLC55_RS15975;old_locus_tag=LLC55_15990 NZ_CP086200.1 Protein Homology CDS 3412769 3414091 . + 0 ID=cds-WP_075242985.1;Parent=gene-LLC55_RS15975;Dbxref=Genbank:WP_075242985.1;Name=WP_075242985.1;Ontology_term=GO:0009423,GO:0003866;gbkey=CDS;gene=aroA;go_function=3-phosphoshikimate 1-carboxyvinyltransferase activity|0003866||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259050.1;locus_tag=LLC55_RS15975;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_075242985.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3414115 3414729 . - . ID=gene-LLC55_RS15980;Name=LLC55_RS15980;end_range=3414729,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15980;old_locus_tag=LLC55_15995;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3414115 3414729 . - 0 ID=cds-LLC55_RS15980;Parent=gene-LLC55_RS15980;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=3414729,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS15980;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3414733 3415007 . - . ID=gene-LLC55_RS15985;Name=LLC55_RS15985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15985;old_locus_tag=LLC55_16000;partial=true;pseudo=true;start_range=.,3414733 NZ_CP086200.1 Protein Homology CDS 3414733 3415007 . - 0 ID=cds-LLC55_RS15985;Parent=gene-LLC55_RS15985;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611270.1%2CRefSeq:WP_076612143.1;locus_tag=LLC55_RS15985;partial=true;product=transposase;pseudo=true;start_range=.,3414733;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3415137 3415244 . - . ID=gene-LLC55_RS15990;Name=LLC55_RS15990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS15990;old_locus_tag=LLC55_16005;partial=true;pseudo=true;start_range=.,3415137 NZ_CP086200.1 Protein Homology CDS 3415137 3415244 . - 0 ID=cds-LLC55_RS15990;Parent=gene-LLC55_RS15990;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182294.1;locus_tag=LLC55_RS15990;partial=true;product=IS1595 family transposase;pseudo=true;start_range=.,3415137;transl_table=11 NZ_CP086200.1 RefSeq gene 3415356 3416369 . - . ID=gene-LLC55_RS15995;Name=LLC55_RS15995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS15995;old_locus_tag=LLC55_16010 NZ_CP086200.1 Protein Homology CDS 3415356 3416369 . - 0 ID=cds-WP_011259047.1;Parent=gene-LLC55_RS15995;Dbxref=Genbank:WP_011259047.1;Name=WP_011259047.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038670.1;locus_tag=LLC55_RS15995;product=hypothetical protein;protein_id=WP_011259047.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3416972 3425110 . + . ID=gene-LLC55_RS16000;Name=LLC55_RS16000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16000;old_locus_tag=LLC55_16015 NZ_CP086200.1 Protein Homology CDS 3416972 3425110 . + 0 ID=cds-WP_113085560.1;Parent=gene-LLC55_RS16000;Dbxref=Genbank:WP_113085560.1;Name=WP_113085560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444829.1;locus_tag=LLC55_RS16000;product=autotransporter-associated beta strand repeat-containing protein;protein_id=WP_113085560.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3425387 3425998 . - . ID=gene-LLC55_RS16005;Name=LLC55_RS16005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16005;old_locus_tag=LLC55_16020 NZ_CP086200.1 Protein Homology CDS 3425387 3425998 . - 0 ID=cds-WP_011259043.1;Parent=gene-LLC55_RS16005;Dbxref=Genbank:WP_011259043.1;Name=WP_011259043.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916054.1;locus_tag=LLC55_RS16005;product=response regulator;protein_id=WP_011259043.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3425995 3427017 . - . ID=gene-LLC55_RS16010;Name=LLC55_RS16010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16010;old_locus_tag=LLC55_16025 NZ_CP086200.1 Protein Homology CDS 3425995 3427017 . - 0 ID=cds-WP_027703759.1;Parent=gene-LLC55_RS16010;Dbxref=Genbank:WP_027703759.1;Name=WP_027703759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159768.1;locus_tag=LLC55_RS16010;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_027703759.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3427136 3428620 . - . ID=gene-LLC55_RS16015;Name=LLC55_RS16015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16015;old_locus_tag=LLC55_16030 NZ_CP086200.1 Protein Homology CDS 3427136 3428620 . - 0 ID=cds-WP_011408577.1;Parent=gene-LLC55_RS16015;Dbxref=Genbank:WP_011408577.1;Name=WP_011408577.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159769.1;locus_tag=LLC55_RS16015;product=efflux transporter outer membrane subunit;protein_id=WP_011408577.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3428617 3431709 . - . ID=gene-LLC55_RS16020;Name=LLC55_RS16020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16020;old_locus_tag=LLC55_16035 NZ_CP086200.1 Protein Homology CDS 3428617 3431709 . - 0 ID=cds-WP_011408576.1;Parent=gene-LLC55_RS16020;Dbxref=Genbank:WP_011408576.1;Name=WP_011408576.1;Ontology_term=GO:0051139,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metal cation:proton antiporter activity|0051139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571964.1;locus_tag=LLC55_RS16020;product=CusA/CzcA family heavy metal efflux RND transporter;protein_id=WP_011408576.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3431702 3432817 . - . ID=gene-LLC55_RS16025;Name=LLC55_RS16025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16025;old_locus_tag=LLC55_16040 NZ_CP086200.1 Protein Homology CDS 3431702 3432817 . - 0 ID=cds-WP_011408575.1;Parent=gene-LLC55_RS16025;Dbxref=Genbank:WP_011408575.1;Name=WP_011408575.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373460.1;locus_tag=LLC55_RS16025;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_011408575.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3433316 3436051 . - . ID=gene-LLC55_RS16030;Name=LLC55_RS16030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16030;old_locus_tag=LLC55_16045 NZ_CP086200.1 Protein Homology CDS 3433316 3436051 . - 0 ID=cds-WP_011408573.1;Parent=gene-LLC55_RS16030;Dbxref=Genbank:WP_011408573.1;Name=WP_011408573.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160179.1;locus_tag=LLC55_RS16030;product=S8 family serine peptidase;protein_id=WP_011408573.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3436883 3438259 . + . ID=gene-LLC55_RS16035;Name=LLC55_RS16035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16035;old_locus_tag=LLC55_16050 NZ_CP086200.1 Protein Homology CDS 3436883 3438259 . + 0 ID=cds-WP_069964867.1;Parent=gene-LLC55_RS16035;Dbxref=Genbank:WP_069964867.1;Name=WP_069964867.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS16035;product=IS5 family transposase;protein_id=WP_069964867.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3438284 3438777 . - . ID=gene-LLC55_RS16040;Name=LLC55_RS16040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16040;old_locus_tag=LLC55_16055;partial=true;pseudo=true;start_range=.,3438284 NZ_CP086200.1 Protein Homology CDS 3438284 3438777 . - 0 ID=cds-LLC55_RS16040;Parent=gene-LLC55_RS16040;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611071.1;locus_tag=LLC55_RS16040;partial=true;product=transposase;pseudo=true;start_range=.,3438284;transl_table=11 NZ_CP086200.1 RefSeq gene 3439004 3440479 . + . ID=gene-LLC55_RS16045;Name=LLC55_RS16045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16045;old_locus_tag=LLC55_16060 NZ_CP086200.1 Protein Homology CDS 3439004 3440479 . + 0 ID=cds-WP_069959772.1-2;Parent=gene-LLC55_RS16045;Dbxref=Genbank:WP_069959772.1;Name=WP_069959772.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS16045;product=IS5-like element ISXoo5 family transposase;protein_id=WP_069959772.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3440804 3441982 . + . ID=gene-LLC55_RS16050;Name=LLC55_RS16050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16050;old_locus_tag=LLC55_16065 NZ_CP086200.1 Protein Homology CDS 3440804 3441982 . + 0 ID=cds-WP_011408569.1;Parent=gene-LLC55_RS16050;Dbxref=Genbank:WP_011408569.1;Name=WP_011408569.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051137.1;locus_tag=LLC55_RS16050;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_011408569.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3442020 3442940 . + . ID=gene-LLC55_RS16055;Name=folE2;gbkey=Gene;gene=folE2;gene_biotype=protein_coding;locus_tag=LLC55_RS16055;old_locus_tag=LLC55_16070 NZ_CP086200.1 Protein Homology CDS 3442020 3442940 . + 0 ID=cds-WP_011408568.1;Parent=gene-LLC55_RS16055;Dbxref=Genbank:WP_011408568.1;Name=WP_011408568.1;Ontology_term=GO:0035998,GO:0003933;gbkey=CDS;gene=folE2;go_function=GTP cyclohydrolase activity|0003933||IEA;go_process=7%2C8-dihydroneopterin 3'-triphosphate biosynthetic process|0035998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408568.1;locus_tag=LLC55_RS16055;product=GTP cyclohydrolase FolE2;protein_id=WP_011408568.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3443434 3443508 . - . ID=gene-LLC55_RS16060;Name=LLC55_RS16060;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS16060;old_locus_tag=LLC55_16075 NZ_CP086200.1 tRNAscan-SE tRNA 3443434 3443508 . - . ID=rna-LLC55_RS16060;Parent=gene-LLC55_RS16060;anticodon=(pos:complement(3443473..3443475));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16060;product=tRNA-Glu NZ_CP086200.1 tRNAscan-SE exon 3443434 3443508 . - . ID=exon-LLC55_RS16060-1;Parent=rna-LLC55_RS16060;anticodon=(pos:complement(3443473..3443475));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16060;product=tRNA-Glu NZ_CP086200.1 RefSeq gene 3443556 3444923 . + . ID=gene-LLC55_RS16065;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=LLC55_RS16065;old_locus_tag=LLC55_16080 NZ_CP086200.1 Protein Homology CDS 3443556 3444923 . + 0 ID=cds-WP_011259034.1;Parent=gene-LLC55_RS16065;Dbxref=Genbank:WP_011259034.1;Name=WP_011259034.1;Ontology_term=GO:0006378,GO:0003723,GO:0004652;gbkey=CDS;gene=pcnB;go_function=RNA binding|0003723||IEA,polynucleotide adenylyltransferase activity|0004652||IEA;go_process=mRNA polyadenylation|0006378||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116093.1;locus_tag=LLC55_RS16065;product=polynucleotide adenylyltransferase PcnB;protein_id=WP_011259034.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3444927 3445412 . + . ID=gene-LLC55_RS16070;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=LLC55_RS16070;old_locus_tag=LLC55_16085 NZ_CP086200.1 Protein Homology CDS 3444927 3445412 . + 0 ID=cds-WP_011259033.1;Parent=gene-LLC55_RS16070;Dbxref=Genbank:WP_011259033.1;Name=WP_011259033.1;Ontology_term=GO:0009396,GO:0003848;gbkey=CDS;gene=folK;go_function=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|0003848||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169088.1;locus_tag=LLC55_RS16070;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_011259033.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3445448 3446263 . + . ID=gene-LLC55_RS16075;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=LLC55_RS16075;old_locus_tag=LLC55_16090 NZ_CP086200.1 Protein Homology CDS 3445448 3446263 . + 0 ID=cds-WP_075242310.1;Parent=gene-LLC55_RS16075;Dbxref=Genbank:WP_075242310.1;Name=WP_075242310.1;Ontology_term=GO:0015940,GO:0003864;gbkey=CDS;gene=panB;go_function=3-methyl-2-oxobutanoate hydroxymethyltransferase activity|0003864||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408567.1;locus_tag=LLC55_RS16075;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_075242310.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3446260 3447102 . + . ID=gene-LLC55_RS16080;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=LLC55_RS16080;old_locus_tag=LLC55_16095 NZ_CP086200.1 Protein Homology CDS 3446260 3447102 . + 0 ID=cds-WP_011259031.1;Parent=gene-LLC55_RS16080;Dbxref=Genbank:WP_011259031.1;Name=WP_011259031.1;Ontology_term=GO:0015940,GO:0004592;gbkey=CDS;gene=panC;go_function=pantoate-beta-alanine ligase activity|0004592||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259031.1;locus_tag=LLC55_RS16080;product=pantoate--beta-alanine ligase;protein_id=WP_011259031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3447281 3447661 . + . ID=gene-LLC55_RS16085;Name=LLC55_RS16085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16085;old_locus_tag=LLC55_16100 NZ_CP086200.1 Protein Homology CDS 3447281 3447661 . + 0 ID=cds-WP_011259030.1;Parent=gene-LLC55_RS16085;Dbxref=Genbank:WP_011259030.1;Name=WP_011259030.1;Ontology_term=GO:0006523,GO:0004068;gbkey=CDS;go_function=aspartate 1-decarboxylase activity|0004068||IEA;go_process=alanine biosynthetic process|0006523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036943.1;locus_tag=LLC55_RS16085;product=aspartate 1-decarboxylase;protein_id=WP_011259030.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3447658 3449172 . + . ID=gene-LLC55_RS16090;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=LLC55_RS16090;old_locus_tag=LLC55_16105 NZ_CP086200.1 Protein Homology CDS 3447658 3449172 . + 0 ID=cds-WP_069964869.1;Parent=gene-LLC55_RS16090;Dbxref=Genbank:WP_069964869.1;Name=WP_069964869.1;Ontology_term=GO:0006094,GO:0006096,GO:0004347;gbkey=CDS;gene=pgi;go_function=glucose-6-phosphate isomerase activity|0004347||IEA;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300464.1;locus_tag=LLC55_RS16090;product=glucose-6-phosphate isomerase;protein_id=WP_069964869.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3449331 3449675 . + . ID=gene-LLC55_RS16095;Name=LLC55_RS16095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16095;old_locus_tag=LLC55_16110 NZ_CP086200.1 Protein Homology CDS 3449331 3449675 . + 0 ID=cds-WP_011259028.1;Parent=gene-LLC55_RS16095;Dbxref=Genbank:WP_011259028.1;Name=WP_011259028.1;Ontology_term=GO:0008219;gbkey=CDS;go_process=cell death|0008219||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371400.1;locus_tag=LLC55_RS16095;product=type II toxin-antitoxin system prevent-host-death family antitoxin;protein_id=WP_011259028.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3449679 3450302 . + . ID=gene-LLC55_RS16100;Name=LLC55_RS16100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16100;old_locus_tag=LLC55_16115 NZ_CP086200.1 Protein Homology CDS 3449679 3450302 . + 0 ID=cds-WP_011408564.1;Parent=gene-LLC55_RS16100;Dbxref=Genbank:WP_011408564.1;Name=WP_011408564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408564.1;locus_tag=LLC55_RS16100;product=hypothetical protein;protein_id=WP_011408564.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3450537 3452492 . - . ID=gene-LLC55_RS16105;Name=LLC55_RS16105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16105;old_locus_tag=LLC55_16120 NZ_CP086200.1 Protein Homology CDS 3450537 3452492 . - 0 ID=cds-WP_011408563.1;Parent=gene-LLC55_RS16105;Dbxref=Genbank:WP_011408563.1;Name=WP_011408563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463094.1;locus_tag=LLC55_RS16105;product=DUF839 domain-containing protein;protein_id=WP_011408563.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3452926 3455538 . + . ID=gene-LLC55_RS16110;Name=LLC55_RS16110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16110;old_locus_tag=LLC55_16125 NZ_CP086200.1 Protein Homology CDS 3452926 3455538 . + 0 ID=cds-WP_075243433.1;Parent=gene-LLC55_RS16110;Dbxref=Genbank:WP_075243433.1;Name=WP_075243433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300459.1;locus_tag=LLC55_RS16110;product=exo 1%2C3/1%2C4-beta-D-glucan glucohydrolase;protein_id=WP_075243433.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3455798 3457360 . + . ID=gene-LLC55_RS16115;Name=LLC55_RS16115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16115;old_locus_tag=LLC55_16130 NZ_CP086200.1 Protein Homology CDS 3455798 3457360 . + 0 ID=cds-WP_011408561.1;Parent=gene-LLC55_RS16115;Dbxref=Genbank:WP_011408561.1;Name=WP_011408561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116097.1;locus_tag=LLC55_RS16115;product=sodium/sugar symporter;protein_id=WP_011408561.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3457469 3457543 . - . ID=gene-LLC55_RS16120;Name=LLC55_RS16120;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS16120;old_locus_tag=LLC55_16135 NZ_CP086200.1 cmsearch ncRNA 3457469 3457543 . - . ID=rna-LLC55_RS16120;Parent=gene-LLC55_RS16120;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16120;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3457469 3457543 . - . ID=exon-LLC55_RS16120-1;Parent=rna-LLC55_RS16120;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16120;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3457605 3459461 . - . ID=gene-LLC55_RS16125;Name=LLC55_RS16125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16125;old_locus_tag=LLC55_16140 NZ_CP086200.1 Protein Homology CDS 3457605 3459461 . - 0 ID=cds-WP_027703349.1;Parent=gene-LLC55_RS16125;Dbxref=Genbank:WP_027703349.1;Name=WP_027703349.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158049.1;locus_tag=LLC55_RS16125;product=EAL domain-containing protein;protein_id=WP_027703349.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3459766 3460218 . + . ID=gene-LLC55_RS16130;Name=LLC55_RS16130;end_range=3460218,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16130;old_locus_tag=LLC55_16145;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3459766 3460218 . + 0 ID=cds-LLC55_RS16130;Parent=gene-LLC55_RS16130;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=3460218,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182719.1;locus_tag=LLC55_RS16130;partial=true;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3460561 3460647 . - . ID=gene-LLC55_RS16135;Name=LLC55_RS16135;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS16135;old_locus_tag=LLC55_16150 NZ_CP086200.1 tRNAscan-SE tRNA 3460561 3460647 . - . ID=rna-LLC55_RS16135;Parent=gene-LLC55_RS16135;anticodon=(pos:complement(3460611..3460613));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16135;product=tRNA-Leu NZ_CP086200.1 tRNAscan-SE exon 3460561 3460647 . - . ID=exon-LLC55_RS16135-1;Parent=rna-LLC55_RS16135;anticodon=(pos:complement(3460611..3460613));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16135;product=tRNA-Leu NZ_CP086200.1 RefSeq gene 3460788 3462977 . - . ID=gene-LLC55_RS16140;Name=LLC55_RS16140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16140;old_locus_tag=LLC55_16155 NZ_CP086200.1 Protein Homology CDS 3460788 3462977 . - 0 ID=cds-WP_075243770.1;Parent=gene-LLC55_RS16140;Dbxref=Genbank:WP_075243770.1;Name=WP_075243770.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155718.1;locus_tag=LLC55_RS16140;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=WP_075243770.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3463106 3464884 . - . ID=gene-LLC55_RS16145;Name=LLC55_RS16145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16145;old_locus_tag=LLC55_16160 NZ_CP086200.1 Protein Homology CDS 3463106 3464884 . - 0 ID=cds-WP_044756846.1;Parent=gene-LLC55_RS16145;Dbxref=Genbank:WP_044756846.1;Name=WP_044756846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408559.1;locus_tag=LLC55_RS16145;product=M14 family metallopeptidase;protein_id=WP_044756846.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3465116 3466078 . + . ID=gene-LLC55_RS16150;Name=LLC55_RS16150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16150;old_locus_tag=LLC55_16165;pseudo=true NZ_CP086200.1 Protein Homology CDS 3465116 3466078 . + 0 ID=cds-LLC55_RS16150;Parent=gene-LLC55_RS16150;Note=frameshifted;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160292.1;locus_tag=LLC55_RS16150;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3466086 3466694 . + . ID=gene-LLC55_RS16155;Name=LLC55_RS16155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16155;old_locus_tag=LLC55_16170 NZ_CP086200.1 Protein Homology CDS 3466086 3466694 . + 0 ID=cds-WP_011408557.1;Parent=gene-LLC55_RS16155;Dbxref=Genbank:WP_011408557.1;Name=WP_011408557.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300253.1;locus_tag=LLC55_RS16155;product=rhomboid family intramembrane serine protease;protein_id=WP_011408557.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3467025 3467213 . - . ID=gene-LLC55_RS16160;Name=LLC55_RS16160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16160;old_locus_tag=LLC55_16175 NZ_CP086200.1 Protein Homology CDS 3467025 3467213 . - 0 ID=cds-WP_044756845.1;Parent=gene-LLC55_RS16160;Dbxref=Genbank:WP_044756845.1;Name=WP_044756845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483521.1;locus_tag=LLC55_RS16160;product=hypothetical protein;protein_id=WP_044756845.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3467397 3467711 . + . ID=gene-LLC55_RS16165;Name=LLC55_RS16165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16165;old_locus_tag=LLC55_16180 NZ_CP086200.1 Protein Homology CDS 3467397 3467711 . + 0 ID=cds-WP_011408556.1;Parent=gene-LLC55_RS16165;Dbxref=Genbank:WP_011408556.1;Name=WP_011408556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366253.1;locus_tag=LLC55_RS16165;product=GNAT family N-acetyltransferase;protein_id=WP_011408556.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3467762 3468595 . + . ID=gene-LLC55_RS16170;Name=LLC55_RS16170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16170;old_locus_tag=LLC55_16185 NZ_CP086200.1 Protein Homology CDS 3467762 3468595 . + 0 ID=cds-WP_044756844.1;Parent=gene-LLC55_RS16170;Dbxref=Genbank:WP_044756844.1;Name=WP_044756844.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089774.1;locus_tag=LLC55_RS16170;product=DUF4163 domain-containing protein;protein_id=WP_044756844.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3468662 3469162 . + . ID=gene-LLC55_RS16175;Name=LLC55_RS16175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16175;old_locus_tag=LLC55_16190 NZ_CP086200.1 Protein Homology CDS 3468662 3469162 . + 0 ID=cds-WP_044756843.1;Parent=gene-LLC55_RS16175;Dbxref=Genbank:WP_044756843.1;Name=WP_044756843.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366256.1;locus_tag=LLC55_RS16175;product=MarR family transcriptional regulator;protein_id=WP_044756843.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3469254 3469997 . - . ID=gene-LLC55_RS16180;Name=LLC55_RS16180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16180;old_locus_tag=LLC55_16195 NZ_CP086200.1 Protein Homology CDS 3469254 3469997 . - 0 ID=cds-WP_228329615.1;Parent=gene-LLC55_RS16180;Dbxref=Genbank:WP_228329615.1;Name=WP_228329615.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444863.1;locus_tag=LLC55_RS16180;product=hypothetical protein;protein_id=WP_228329615.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3469994 3470494 . - . ID=gene-LLC55_RS16185;Name=LLC55_RS16185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16185;old_locus_tag=LLC55_16200 NZ_CP086200.1 Protein Homology CDS 3469994 3470494 . - 0 ID=cds-WP_011259013.1;Parent=gene-LLC55_RS16185;Dbxref=Genbank:WP_011259013.1;Name=WP_011259013.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259013.1;locus_tag=LLC55_RS16185;product=RNA polymerase sigma factor;protein_id=WP_011259013.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3470722 3471906 . + . ID=gene-LLC55_RS16190;Name=LLC55_RS16190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16190;old_locus_tag=LLC55_16205 NZ_CP086200.1 Protein Homology CDS 3470722 3471906 . + 0 ID=cds-WP_228329616.1;Parent=gene-LLC55_RS16190;Dbxref=Genbank:WP_228329616.1;Name=WP_228329616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503877.1;locus_tag=LLC55_RS16190;product=S8 family serine peptidase;protein_id=WP_228329616.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3472009 3472722 . + . ID=gene-LLC55_RS16195;Name=LLC55_RS16195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16195;old_locus_tag=LLC55_16210 NZ_CP086200.1 Protein Homology CDS 3472009 3472722 . + 0 ID=cds-WP_069959861.1;Parent=gene-LLC55_RS16195;Dbxref=Genbank:WP_069959861.1;Name=WP_069959861.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117317.1;locus_tag=LLC55_RS16195;product=hypothetical protein;protein_id=WP_069959861.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3473064 3473192 . + . ID=gene-LLC55_RS16200;Name=LLC55_RS16200;end_range=3473192,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16200;old_locus_tag=LLC55_16215;partial=true;pseudo=true;start_range=.,3473064 NZ_CP086200.1 Protein Homology CDS 3473064 3473192 . + 0 ID=cds-LLC55_RS16200;Parent=gene-LLC55_RS16200;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3473192,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257360.1;locus_tag=LLC55_RS16200;partial=true;product=HTH domain-containing protein;pseudo=true;start_range=.,3473064;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3473254 3475428 . - . ID=gene-LLC55_RS16205;Name=LLC55_RS16205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16205;old_locus_tag=LLC55_16220;pseudo=true NZ_CP086200.1 Protein Homology CDS 3473254 3475428 . - 0 ID=cds-LLC55_RS16205;Parent=gene-LLC55_RS16205;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113230.1;locus_tag=LLC55_RS16205;product=M3 family metallopeptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3475670 3476155 . + . ID=gene-LLC55_RS16210;Name=LLC55_RS16210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16210;old_locus_tag=LLC55_16225 NZ_CP086200.1 Protein Homology CDS 3475670 3476155 . + 0 ID=cds-WP_011259009.1;Parent=gene-LLC55_RS16210;Dbxref=Genbank:WP_011259009.1;Name=WP_011259009.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571409.1;locus_tag=LLC55_RS16210;product=glutathione peroxidase;protein_id=WP_011259009.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3476306 3477085 . - . ID=gene-LLC55_RS16215;Name=LLC55_RS16215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16215;old_locus_tag=LLC55_16230 NZ_CP086200.1 Protein Homology CDS 3476306 3477085 . - 0 ID=cds-WP_011408551.1;Parent=gene-LLC55_RS16215;Dbxref=Genbank:WP_011408551.1;Name=WP_011408551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966679.1;locus_tag=LLC55_RS16215;product=ferredoxin--NADP reductase;protein_id=WP_011408551.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3477274 3479154 . - . ID=gene-LLC55_RS16220;Name=LLC55_RS16220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16220;old_locus_tag=LLC55_16235 NZ_CP086200.1 Protein Homology CDS 3477274 3479154 . - 0 ID=cds-WP_012444869.1;Parent=gene-LLC55_RS16220;Dbxref=Genbank:WP_012444869.1;Name=WP_012444869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911790.1;locus_tag=LLC55_RS16220;product=ABC transporter ATP-binding protein;protein_id=WP_012444869.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3479488 3481005 . + . ID=gene-LLC55_RS16225;Name=LLC55_RS16225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16225;old_locus_tag=LLC55_16240 NZ_CP086200.1 Protein Homology CDS 3479488 3481005 . + 0 ID=cds-WP_011259006.1;Parent=gene-LLC55_RS16225;Dbxref=Genbank:WP_011259006.1;Name=WP_011259006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483539.1;locus_tag=LLC55_RS16225;product=fumarate hydratase;protein_id=WP_011259006.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3481142 3481776 . + . ID=gene-LLC55_RS16230;Name=LLC55_RS16230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16230;old_locus_tag=LLC55_16245;pseudo=true NZ_CP086200.1 Protein Homology CDS 3481142 3481776 . + 0 ID=cds-LLC55_RS16230;Parent=gene-LLC55_RS16230;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483541.1;locus_tag=LLC55_RS16230;product=glutathione S-transferase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3482067 3482142 . - . ID=gene-LLC55_RS16235;Name=LLC55_RS16235;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS16235;old_locus_tag=LLC55_16250 NZ_CP086200.1 cmsearch ncRNA 3482067 3482142 . - . ID=rna-LLC55_RS16235;Parent=gene-LLC55_RS16235;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16235;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3482067 3482142 . - . ID=exon-LLC55_RS16235-1;Parent=rna-LLC55_RS16235;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16235;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3482205 3483338 . - . ID=gene-LLC55_RS16240;Name=LLC55_RS16240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16240;old_locus_tag=LLC55_16255 NZ_CP086200.1 Protein Homology CDS 3482205 3483338 . - 0 ID=cds-WP_011408549.1;Parent=gene-LLC55_RS16240;Dbxref=Genbank:WP_011408549.1;Name=WP_011408549.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911798.1;locus_tag=LLC55_RS16240;product=phospholipase A;protein_id=WP_011408549.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3483781 3484389 . + . ID=gene-LLC55_RS23490;Name=LLC55_RS23490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23490 NZ_CP086200.1 Protein Homology CDS 3483781 3484389 . + 0 ID=cds-WP_230455230.1;Parent=gene-LLC55_RS23490;Dbxref=Genbank:WP_230455230.1;Name=WP_230455230.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: protein motif:HMM:NF033545.0;locus_tag=LLC55_RS23490;product=IS630 family transposase;protein_id=WP_230455230.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3484323 3484739 . + . ID=gene-LLC55_RS23495;Name=LLC55_RS23495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23495;partial=true;pseudo=true;start_range=.,3484323 NZ_CP086200.1 Protein Homology CDS 3484323 3484739 . + 0 ID=cds-LLC55_RS23495;Parent=gene-LLC55_RS23495;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033545.0;locus_tag=LLC55_RS23495;partial=true;product=transposase;pseudo=true;start_range=.,3484323;transl_table=11 NZ_CP086200.1 RefSeq gene 3484886 3485920 . + . ID=gene-LLC55_RS16250;Name=xopT;gbkey=Gene;gene=xopT;gene_biotype=protein_coding;locus_tag=LLC55_RS16250;old_locus_tag=LLC55_16265 NZ_CP086200.1 Protein Homology CDS 3484886 3485920 . + 0 ID=cds-WP_196220329.1;Parent=gene-LLC55_RS16250;Dbxref=Genbank:WP_196220329.1;Name=WP_196220329.1;gbkey=CDS;gene=xopT;inference=COORDINATES: similar to AA sequence:RefSeq:WP_199285673.1;locus_tag=LLC55_RS16250;product=hypothetical protein;protein_id=WP_196220329.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3486041 3486628 . + . ID=gene-LLC55_RS16255;Name=LLC55_RS16255;end_range=3486628,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16255;old_locus_tag=LLC55_16270;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3486041 3486628 . + 0 ID=cds-LLC55_RS16255;Parent=gene-LLC55_RS16255;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=3486628,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS16255;partial=true;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3486684 3487658 . - . ID=gene-LLC55_RS16260;Name=LLC55_RS16260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16260;old_locus_tag=LLC55_16275 NZ_CP086200.1 Protein Homology CDS 3486684 3487658 . - 0 ID=cds-WP_011259000.1;Parent=gene-LLC55_RS16260;Dbxref=Genbank:WP_011259000.1;Name=WP_011259000.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503843.1;locus_tag=LLC55_RS16260;product=GGDEF domain-containing protein;protein_id=WP_011259000.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3487774 3488058 . + . ID=gene-LLC55_RS16265;Name=LLC55_RS16265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16265;old_locus_tag=LLC55_16280 NZ_CP086200.1 Protein Homology CDS 3487774 3488058 . + 0 ID=cds-WP_042464872.1;Parent=gene-LLC55_RS16265;Dbxref=Genbank:WP_042464872.1;Name=WP_042464872.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366326.1;locus_tag=LLC55_RS16265;product=hypothetical protein;protein_id=WP_042464872.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3488255 3489908 . - . ID=gene-LLC55_RS16270;Name=LLC55_RS16270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16270;old_locus_tag=LLC55_16285;pseudo=true NZ_CP086200.1 Protein Homology CDS 3488255 3489908 . - 0 ID=cds-LLC55_RS16270;Parent=gene-LLC55_RS16270;Note=frameshifted%3B internal stop;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380255.1;locus_tag=LLC55_RS16270;product=diguanylate cyclase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3489953 3490716 . - . ID=gene-LLC55_RS16275;Name=LLC55_RS16275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16275;old_locus_tag=LLC55_16290 NZ_CP086200.1 Protein Homology CDS 3490401 3490716 . - 0 ID=cds-WP_094187715.1-9;Parent=gene-LLC55_RS16275;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS16275;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3489953 3490401 . - 2 ID=cds-WP_094187715.1-9;Parent=gene-LLC55_RS16275;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS16275;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3490801 3491608 . + . ID=gene-LLC55_RS16280;Name=LLC55_RS16280;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16280;old_locus_tag=LLC55_16295;pseudo=true NZ_CP086200.1 Protein Homology CDS 3490801 3491608 . + 0 ID=cds-LLC55_RS16280;Parent=gene-LLC55_RS16280;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260659.1;locus_tag=LLC55_RS16280;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3492282 3495677 . - . ID=gene-LLC55_RS16285;Name=LLC55_RS16285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16285;old_locus_tag=LLC55_16300 NZ_CP086200.1 Protein Homology CDS 3492282 3495677 . - 0 ID=cds-WP_011408539.1;Parent=gene-LLC55_RS16285;Dbxref=Genbank:WP_011408539.1;Name=WP_011408539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157546.1;locus_tag=LLC55_RS16285;product=PAS domain S-box protein;protein_id=WP_011408539.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3495892 3496272 . - . ID=gene-LLC55_RS16290;Name=LLC55_RS16290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16290;old_locus_tag=LLC55_16305 NZ_CP086200.1 Protein Homology CDS 3495892 3496272 . - 0 ID=cds-WP_011258994.1;Parent=gene-LLC55_RS16290;Dbxref=Genbank:WP_011258994.1;Name=WP_011258994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258994.1;locus_tag=LLC55_RS16290;product=response regulator;protein_id=WP_011258994.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3496411 3496497 . + . ID=gene-LLC55_RS16295;Name=LLC55_RS16295;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS16295;old_locus_tag=LLC55_16310 NZ_CP086200.1 tRNAscan-SE tRNA 3496411 3496497 . + . ID=rna-LLC55_RS16295;Parent=gene-LLC55_RS16295;anticodon=(pos:3496445..3496447);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16295;product=tRNA-Leu NZ_CP086200.1 tRNAscan-SE exon 3496411 3496497 . + . ID=exon-LLC55_RS16295-1;Parent=rna-LLC55_RS16295;anticodon=(pos:3496445..3496447);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16295;product=tRNA-Leu NZ_CP086200.1 RefSeq gene 3496860 3497291 . + . ID=gene-LLC55_RS16300;Name=LLC55_RS16300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16300;old_locus_tag=LLC55_16315 NZ_CP086200.1 Protein Homology CDS 3496860 3497291 . + 0 ID=cds-WP_011408538.1;Parent=gene-LLC55_RS16300;Dbxref=Genbank:WP_011408538.1;Name=WP_011408538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407513.1;locus_tag=LLC55_RS16300;product=hypothetical protein;protein_id=WP_011408538.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3497288 3497491 . + . ID=gene-LLC55_RS16305;Name=LLC55_RS16305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16305;old_locus_tag=LLC55_16320 NZ_CP086200.1 GeneMarkS-2+ CDS 3497288 3497491 . + 0 ID=cds-WP_027703995.1;Parent=gene-LLC55_RS16305;Dbxref=Genbank:WP_027703995.1;Name=WP_027703995.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16305;product=hypothetical protein;protein_id=WP_027703995.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3497515 3498897 . - . ID=gene-LLC55_RS16310;Name=LLC55_RS16310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16310;old_locus_tag=LLC55_16325;pseudo=true NZ_CP086200.1 Protein Homology CDS 3497515 3498897 . - 0 ID=cds-LLC55_RS16310;Parent=gene-LLC55_RS16310;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS16310;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3499118 3499777 . - . ID=gene-LLC55_RS16315;Name=LLC55_RS16315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16315;old_locus_tag=LLC55_16330 NZ_CP086200.1 Protein Homology CDS 3499118 3499777 . - 0 ID=cds-WP_011408535.1;Parent=gene-LLC55_RS16315;Dbxref=Genbank:WP_011408535.1;Name=WP_011408535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482798.1;locus_tag=LLC55_RS16315;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_011408535.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3499833 3501749 . - . ID=gene-LLC55_RS16320;Name=edd;gbkey=Gene;gene=edd;gene_biotype=protein_coding;locus_tag=LLC55_RS16320;old_locus_tag=LLC55_16335 NZ_CP086200.1 Protein Homology CDS 3499833 3501749 . - 0 ID=cds-WP_011258990.1;Parent=gene-LLC55_RS16320;Dbxref=Genbank:WP_011258990.1;Name=WP_011258990.1;Ontology_term=GO:0009255,GO:0004456;gbkey=CDS;gene=edd;go_function=phosphogluconate dehydratase activity|0004456||IEA;go_process=Entner-Doudoroff pathway through 6-phosphogluconate|0009255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472018.1;locus_tag=LLC55_RS16320;product=phosphogluconate dehydratase;protein_id=WP_011258990.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3501852 3502571 . - . ID=gene-LLC55_RS16325;Name=pgl;gbkey=Gene;gene=pgl;gene_biotype=protein_coding;locus_tag=LLC55_RS16325;old_locus_tag=LLC55_16340 NZ_CP086200.1 Protein Homology CDS 3501852 3502571 . - 0 ID=cds-WP_011258989.1;Parent=gene-LLC55_RS16325;Dbxref=Genbank:WP_011258989.1;Name=WP_011258989.1;Ontology_term=GO:0006098,GO:0017057;gbkey=CDS;gene=pgl;go_function=6-phosphogluconolactonase activity|0017057||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258989.1;locus_tag=LLC55_RS16325;product=6-phosphogluconolactonase;protein_id=WP_011258989.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3502568 3503575 . - . ID=gene-LLC55_RS16330;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=LLC55_RS16330;old_locus_tag=LLC55_16345 NZ_CP086200.1 Protein Homology CDS 3502568 3503575 . - 0 ID=cds-WP_011258988.1;Parent=gene-LLC55_RS16330;Dbxref=Genbank:WP_011258988.1;Name=WP_011258988.1;Ontology_term=GO:0005975,GO:0004340;gbkey=CDS;gene=glk;go_function=glucokinase activity|0004340||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802227.1;locus_tag=LLC55_RS16330;product=glucokinase;protein_id=WP_011258988.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3503572 3505002 . - . ID=gene-LLC55_RS16335;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=LLC55_RS16335;old_locus_tag=LLC55_16350 NZ_CP086200.1 Protein Homology CDS 3503572 3505002 . - 0 ID=cds-WP_011408534.1;Parent=gene-LLC55_RS16335;Dbxref=Genbank:WP_011408534.1;Name=WP_011408534.1;Ontology_term=GO:0006098,GO:0004345;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945345.1;locus_tag=LLC55_RS16335;product=glucose-6-phosphate dehydrogenase;protein_id=WP_011408534.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3505440 3506537 . + . ID=gene-LLC55_RS16340;Name=ugpC;gbkey=Gene;gene=ugpC;gene_biotype=protein_coding;locus_tag=LLC55_RS16340;old_locus_tag=LLC55_16355 NZ_CP086200.1 Protein Homology CDS 3505440 3506537 . + 0 ID=cds-WP_011258986.1;Parent=gene-LLC55_RS16340;Dbxref=Genbank:WP_011258986.1;Name=WP_011258986.1;Ontology_term=GO:0005524,GO:0140359;gbkey=CDS;gene=ugpC;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503506.1;locus_tag=LLC55_RS16340;product=sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;protein_id=WP_011258986.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3506587 3506661 . + . ID=gene-LLC55_RS16345;Name=LLC55_RS16345;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS16345;old_locus_tag=LLC55_16360 NZ_CP086200.1 cmsearch ncRNA 3506587 3506661 . + . ID=rna-LLC55_RS16345;Parent=gene-LLC55_RS16345;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16345;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3506587 3506661 . + . ID=exon-LLC55_RS16345-1;Parent=rna-LLC55_RS16345;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16345;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3506666 3507538 . - . ID=gene-LLC55_RS16350;Name=LLC55_RS16350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16350;old_locus_tag=LLC55_16365 NZ_CP086200.1 Protein Homology CDS 3506666 3507538 . - 0 ID=cds-WP_011408533.1;Parent=gene-LLC55_RS16350;Dbxref=Genbank:WP_011408533.1;Name=WP_011408533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300222.1;locus_tag=LLC55_RS16350;product=folate-binding protein YgfZ;protein_id=WP_011408533.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3507440 3507748 . + . ID=gene-LLC55_RS16355;Name=LLC55_RS16355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16355;old_locus_tag=LLC55_16370 NZ_CP086200.1 Protein Homology CDS 3507440 3507748 . + 0 ID=cds-WP_228329617.1;Parent=gene-LLC55_RS16355;Dbxref=Genbank:WP_228329617.1;Name=WP_228329617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090240.1;locus_tag=LLC55_RS16355;product=DUF1674 domain-containing protein;protein_id=WP_228329617.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3507808 3508203 . + . ID=gene-LLC55_RS16360;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;locus_tag=LLC55_RS16360;old_locus_tag=LLC55_16375 NZ_CP086200.1 Protein Homology CDS 3507808 3508203 . + 0 ID=cds-WP_011258985.1;Parent=gene-LLC55_RS16360;Dbxref=Genbank:WP_011258985.1;Name=WP_011258985.1;Ontology_term=GO:0006099,GO:0000104,GO:0045282;gbkey=CDS;gene=sdhC;go_component=plasma membrane succinate dehydrogenase complex|0045282||IEA;go_function=succinate dehydrogenase activity|0000104||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090241.1;locus_tag=LLC55_RS16360;product=succinate dehydrogenase%2C cytochrome b556 subunit;protein_id=WP_011258985.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3508200 3508586 . + . ID=gene-LLC55_RS16365;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=LLC55_RS16365;old_locus_tag=LLC55_16380 NZ_CP086200.1 Protein Homology CDS 3508200 3508586 . + 0 ID=cds-WP_011258984.1;Parent=gene-LLC55_RS16365;Dbxref=Genbank:WP_011258984.1;Name=WP_011258984.1;Ontology_term=GO:0006099,GO:0000104,GO:0045282;gbkey=CDS;gene=sdhD;go_component=plasma membrane succinate dehydrogenase complex|0045282||IEA;go_function=succinate dehydrogenase activity|0000104||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995651.1;locus_tag=LLC55_RS16365;product=succinate dehydrogenase%2C hydrophobic membrane anchor protein;protein_id=WP_011258984.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3508621 3510411 . + . ID=gene-LLC55_RS16370;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=LLC55_RS16370;old_locus_tag=LLC55_16385 NZ_CP086200.1 Protein Homology CDS 3508621 3510411 . + 0 ID=cds-WP_011258983.1;Parent=gene-LLC55_RS16370;Dbxref=Genbank:WP_011258983.1;Name=WP_011258983.1;Ontology_term=GO:0006099,GO:0022900,GO:0016627,GO:0050660;gbkey=CDS;gene=sdhA;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851880.1;locus_tag=LLC55_RS16370;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_011258983.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3510421 3510624 . + . ID=gene-LLC55_RS16375;Name=LLC55_RS16375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16375;old_locus_tag=LLC55_16390 NZ_CP086200.1 Protein Homology CDS 3510421 3510624 . + 0 ID=cds-WP_027703324.1;Parent=gene-LLC55_RS16375;Dbxref=Genbank:WP_027703324.1;Name=WP_027703324.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167450.1;locus_tag=LLC55_RS16375;product=hypothetical protein;protein_id=WP_027703324.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3510641 3511423 . + . ID=gene-LLC55_RS16380;Name=LLC55_RS16380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16380;old_locus_tag=LLC55_16395 NZ_CP086200.1 Protein Homology CDS 3510641 3511423 . + 0 ID=cds-WP_011408532.1;Parent=gene-LLC55_RS16380;Dbxref=Genbank:WP_011408532.1;Name=WP_011408532.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037280.1;locus_tag=LLC55_RS16380;product=succinate dehydrogenase iron-sulfur subunit;protein_id=WP_011408532.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3511534 3511782 . + . ID=gene-LLC55_RS16385;Name=LLC55_RS16385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16385;old_locus_tag=LLC55_16400 NZ_CP086200.1 Protein Homology CDS 3511534 3511782 . + 0 ID=cds-WP_011408531.1;Parent=gene-LLC55_RS16385;Dbxref=Genbank:WP_011408531.1;Name=WP_011408531.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802215.1;locus_tag=LLC55_RS16385;product=succinate dehydrogenase assembly factor 2;protein_id=WP_011408531.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3511733 3512185 . + . ID=gene-LLC55_RS16390;Name=LLC55_RS16390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16390;old_locus_tag=LLC55_16405 NZ_CP086200.1 Protein Homology CDS 3511733 3512185 . + 0 ID=cds-WP_014503500.1;Parent=gene-LLC55_RS16390;Dbxref=Genbank:WP_014503500.1;Name=WP_014503500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156610.1;locus_tag=LLC55_RS16390;product=hypothetical protein;protein_id=WP_014503500.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3512209 3513450 . + . ID=gene-LLC55_RS16395;Name=LLC55_RS16395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16395;old_locus_tag=LLC55_16410 NZ_CP086200.1 Protein Homology CDS 3512209 3513450 . + 0 ID=cds-WP_010378794.1;Parent=gene-LLC55_RS16395;Dbxref=Genbank:WP_010378794.1;Name=WP_010378794.1;Ontology_term=GO:0042953,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902586.1;locus_tag=LLC55_RS16395;product=lipoprotein-releasing ABC transporter permease subunit;protein_id=WP_010378794.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3513443 3514177 . + . ID=gene-LLC55_RS16400;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=LLC55_RS16400;old_locus_tag=LLC55_16415 NZ_CP086200.1 Protein Homology CDS 3513443 3514177 . + 0 ID=cds-WP_011258980.1;Parent=gene-LLC55_RS16400;Dbxref=Genbank:WP_011258980.1;Name=WP_011258980.1;Ontology_term=GO:0042953,GO:0005524,GO:0043190;gbkey=CDS;gene=lolD;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472015.1;locus_tag=LLC55_RS16400;product=lipoprotein-releasing ABC transporter ATP-binding protein LolD;protein_id=WP_011258980.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3514350 3515414 . - . ID=gene-LLC55_RS16405;Name=LLC55_RS16405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16405;old_locus_tag=LLC55_16420;pseudo=true NZ_CP086200.1 Protein Homology CDS 3514350 3515414 . - 0 ID=cds-LLC55_RS16405;Parent=gene-LLC55_RS16405;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303656.1;locus_tag=LLC55_RS16405;product=SDR family oxidoreductase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3515571 3516536 . - . ID=gene-LLC55_RS16410;Name=LLC55_RS16410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16410;old_locus_tag=LLC55_16425 NZ_CP086200.1 Protein Homology CDS 3515571 3516536 . - 0 ID=cds-WP_109181948.1-2;Parent=gene-LLC55_RS16410;Dbxref=Genbank:WP_109181948.1;Name=WP_109181948.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS16410;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181948.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3516790 3519333 . + . ID=gene-LLC55_RS16415;Name=LLC55_RS16415;end_range=3519333,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16415;old_locus_tag=LLC55_16430;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3516790 3519333 . + 0 ID=cds-LLC55_RS16415;Parent=gene-LLC55_RS16415;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0009290,GO:0005215;end_range=3519333,.;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=DNA import into cell involved in transformation|0009290||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167829.1;locus_tag=LLC55_RS16415;partial=true;product=DNA internalization-related competence protein ComEC/Rec2;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3519227 3519889 . + . ID=gene-LLC55_RS16420;Name=LLC55_RS16420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16420;old_locus_tag=LLC55_16435 NZ_CP086200.1 Protein Homology CDS 3519227 3519889 . + 0 ID=cds-WP_011408526.1;Parent=gene-LLC55_RS16420;Dbxref=Genbank:WP_011408526.1;Name=WP_011408526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916730.1;locus_tag=LLC55_RS16420;product=MotA/TolQ/ExbB proton channel family protein;protein_id=WP_011408526.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3519893 3520357 . + . ID=gene-LLC55_RS16425;Name=LLC55_RS16425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16425;old_locus_tag=LLC55_16440 NZ_CP086200.1 Protein Homology CDS 3519893 3520357 . + 0 ID=cds-WP_011258975.1;Parent=gene-LLC55_RS16425;Dbxref=Genbank:WP_011258975.1;Name=WP_011258975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115686.1;locus_tag=LLC55_RS16425;product=biopolymer transporter ExbD;protein_id=WP_011258975.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3520354 3522123 . + . ID=gene-LLC55_RS16430;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=LLC55_RS16430;old_locus_tag=LLC55_16445 NZ_CP086200.1 Protein Homology CDS 3520354 3522123 . + 0 ID=cds-WP_011258974.1;Parent=gene-LLC55_RS16430;Dbxref=Genbank:WP_011258974.1;Name=WP_011258974.1;Ontology_term=GO:0006869,GO:0005319;gbkey=CDS;gene=msbA;go_function=lipid transporter activity|0005319||IEA;go_process=lipid transport|0006869||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158537.1;locus_tag=LLC55_RS16430;product=lipid A export permease/ATP-binding protein MsbA;protein_id=WP_011258974.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3522120 3523160 . + . ID=gene-LLC55_RS16435;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=LLC55_RS16435;old_locus_tag=LLC55_16450 NZ_CP086200.1 Protein Homology CDS 3522120 3523160 . + 0 ID=cds-WP_011258973.1;Parent=gene-LLC55_RS16435;Dbxref=Genbank:WP_011258973.1;Name=WP_011258973.1;Ontology_term=GO:0009245,GO:0009029;gbkey=CDS;gene=lpxK;go_function=tetraacyldisaccharide 4'-kinase activity|0009029||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449592.1;locus_tag=LLC55_RS16435;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_011258973.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3523452 3524231 . + . ID=gene-LLC55_RS16440;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=LLC55_RS16440;old_locus_tag=LLC55_16455 NZ_CP086200.1 Protein Homology CDS 3523452 3524231 . + 0 ID=cds-WP_011258972.1;Parent=gene-LLC55_RS16440;Dbxref=Genbank:WP_011258972.1;Name=WP_011258972.1;Ontology_term=GO:0009244,GO:0008690;gbkey=CDS;gene=kdsB;go_function=3-deoxy-manno-octulosonate cytidylyltransferase activity|0008690||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373332.1;locus_tag=LLC55_RS16440;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_011258972.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3524228 3524692 . + . ID=gene-LLC55_RS16445;Name=LLC55_RS16445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16445;old_locus_tag=LLC55_16460 NZ_CP086200.1 Protein Homology CDS 3524228 3524692 . + 0 ID=cds-WP_011258971.1;Parent=gene-LLC55_RS16445;Dbxref=Genbank:WP_011258971.1;Name=WP_011258971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916712.1;locus_tag=LLC55_RS16445;product=low molecular weight phosphotyrosine protein phosphatase;protein_id=WP_011258971.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3524716 3526134 . + . ID=gene-LLC55_RS16450;Name=LLC55_RS16450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16450;old_locus_tag=LLC55_16465 NZ_CP086200.1 Protein Homology CDS 3524716 3526134 . + 0 ID=cds-WP_011258970.1;Parent=gene-LLC55_RS16450;Dbxref=Genbank:WP_011258970.1;Name=WP_011258970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113177.1;locus_tag=LLC55_RS16450;product=hypothetical protein;protein_id=WP_011258970.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3526131 3527987 . + . ID=gene-LLC55_RS16455;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=LLC55_RS16455;old_locus_tag=LLC55_16470 NZ_CP086200.1 Protein Homology CDS 3526131 3527987 . + 0 ID=cds-WP_011258969.1;Parent=gene-LLC55_RS16455;Dbxref=Genbank:WP_011258969.1;Name=WP_011258969.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237626.1;locus_tag=LLC55_RS16455;product=excinuclease ABC subunit UvrC;protein_id=WP_011258969.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3527987 3528619 . + . ID=gene-LLC55_RS16460;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=LLC55_RS16460;old_locus_tag=LLC55_16475 NZ_CP086200.1 Protein Homology CDS 3527987 3528619 . + 0 ID=cds-WP_011258968.1;Parent=gene-LLC55_RS16460;Dbxref=Genbank:WP_011258968.1;Name=WP_011258968.1;Ontology_term=GO:0008654,GO:0008444;gbkey=CDS;gene=pgsA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995682.1;locus_tag=LLC55_RS16460;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_011258968.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3528656 3528731 . + . ID=gene-LLC55_RS16465;Name=LLC55_RS16465;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS16465;old_locus_tag=LLC55_16480 NZ_CP086200.1 tRNAscan-SE tRNA 3528656 3528731 . + . ID=rna-LLC55_RS16465;Parent=gene-LLC55_RS16465;anticodon=(pos:3528689..3528691);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16465;product=tRNA-Gly NZ_CP086200.1 tRNAscan-SE exon 3528656 3528731 . + . ID=exon-LLC55_RS16465-1;Parent=rna-LLC55_RS16465;anticodon=(pos:3528689..3528691);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16465;product=tRNA-Gly NZ_CP086200.1 RefSeq gene 3528800 3528873 . + . ID=gene-LLC55_RS16470;Name=LLC55_RS16470;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS16470;old_locus_tag=LLC55_16485 NZ_CP086200.1 tRNAscan-SE tRNA 3528800 3528873 . + . ID=rna-LLC55_RS16470;Parent=gene-LLC55_RS16470;anticodon=(pos:3528832..3528834);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16470;product=tRNA-Cys NZ_CP086200.1 tRNAscan-SE exon 3528800 3528873 . + . ID=exon-LLC55_RS16470-1;Parent=rna-LLC55_RS16470;anticodon=(pos:3528832..3528834);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16470;product=tRNA-Cys NZ_CP086200.1 RefSeq gene 3528956 3529031 . + . ID=gene-LLC55_RS16475;Name=LLC55_RS16475;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS16475;old_locus_tag=LLC55_16490 NZ_CP086200.1 tRNAscan-SE tRNA 3528956 3529031 . + . ID=rna-LLC55_RS16475;Parent=gene-LLC55_RS16475;anticodon=(pos:3528989..3528991);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16475;product=tRNA-Gly NZ_CP086200.1 tRNAscan-SE exon 3528956 3529031 . + . ID=exon-LLC55_RS16475-1;Parent=rna-LLC55_RS16475;anticodon=(pos:3528989..3528991);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16475;product=tRNA-Gly NZ_CP086200.1 RefSeq gene 3529094 3529696 . - . ID=gene-LLC55_RS16480;Name=LLC55_RS16480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16480;old_locus_tag=LLC55_16495 NZ_CP086200.1 Protein Homology CDS 3529094 3529696 . - 0 ID=cds-WP_228329618.1;Parent=gene-LLC55_RS16480;Dbxref=Genbank:WP_228329618.1;Name=WP_228329618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444921.1;locus_tag=LLC55_RS16480;product=VOC family protein;protein_id=WP_228329618.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3529767 3530666 . - . ID=gene-LLC55_RS16485;Name=LLC55_RS16485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16485;old_locus_tag=LLC55_16500 NZ_CP086200.1 Protein Homology CDS 3529767 3530666 . - 0 ID=cds-WP_041182131.1;Parent=gene-LLC55_RS16485;Dbxref=Genbank:WP_041182131.1;Name=WP_041182131.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444922.1;locus_tag=LLC55_RS16485;product=IS30 family transposase;protein_id=WP_041182131.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3530717 3531901 . + . ID=gene-LLC55_RS16490;Name=LLC55_RS16490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16490;old_locus_tag=LLC55_16505 NZ_CP086200.1 Protein Homology CDS 3530717 3531901 . + 0 ID=cds-WP_011408522.1;Parent=gene-LLC55_RS16490;Dbxref=Genbank:WP_011408522.1;Name=WP_011408522.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS16490;product=IS256-like element IS1113 family transposase;protein_id=WP_011408522.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3531936 3532037 . - . ID=gene-LLC55_RS16495;Name=LLC55_RS16495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16495;old_locus_tag=LLC55_16510;partial=true;pseudo=true;start_range=.,3531936 NZ_CP086200.1 Protein Homology CDS 3531936 3532037 . - 0 ID=cds-LLC55_RS16495;Parent=gene-LLC55_RS16495;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS16495;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,3531936;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3532299 3533207 . - . ID=gene-LLC55_RS16500;Name=LLC55_RS16500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16500;old_locus_tag=LLC55_16515;partial=true;pseudo=true;start_range=.,3532299 NZ_CP086200.1 Protein Homology CDS 3532299 3533207 . - 0 ID=cds-LLC55_RS16500;Parent=gene-LLC55_RS16500;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612052.1;locus_tag=LLC55_RS16500;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,3532299;transl_table=11 NZ_CP086200.1 RefSeq gene 3533302 3537318 . - . ID=gene-LLC55_RS16505;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS16505;old_locus_tag=LLC55_16520 NZ_CP086200.1 Protein Homology CDS 3533302 3537318 . - 0 ID=cds-WP_228329619.1;Parent=gene-LLC55_RS16505;Dbxref=Genbank:WP_228329619.1;Name=WP_228329619.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS16505;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_228329619.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3537543 3537842 . - . ID=gene-LLC55_RS16510;Name=LLC55_RS16510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16510;old_locus_tag=LLC55_16525 NZ_CP086200.1 Protein Homology CDS 3537543 3537842 . - 0 ID=cds-WP_011408491.1-2;Parent=gene-LLC55_RS16510;Dbxref=Genbank:WP_011408491.1;Name=WP_011408491.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408500.1;locus_tag=LLC55_RS16510;product=hypothetical protein;protein_id=WP_011408491.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3537846 3538040 . - . ID=gene-LLC55_RS16515;Name=LLC55_RS16515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16515;old_locus_tag=LLC55_16530 NZ_CP086200.1 GeneMarkS-2+ CDS 3537846 3538040 . - 0 ID=cds-WP_042464821.1;Parent=gene-LLC55_RS16515;Dbxref=Genbank:WP_042464821.1;Name=WP_042464821.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16515;product=hypothetical protein;protein_id=WP_042464821.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3538271 3539034 . - . ID=gene-LLC55_RS16520;Name=LLC55_RS16520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16520;old_locus_tag=LLC55_16535 NZ_CP086200.1 Protein Homology CDS 3538719 3539034 . - 0 ID=cds-WP_094187715.1-10;Parent=gene-LLC55_RS16520;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS16520;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3538271 3538719 . - 2 ID=cds-WP_094187715.1-10;Parent=gene-LLC55_RS16520;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS16520;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3539124 3542879 . - . ID=gene-LLC55_RS16525;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS16525;old_locus_tag=LLC55_16540 NZ_CP086200.1 Protein Homology CDS 3539124 3542879 . - 0 ID=cds-WP_069964534.1;Parent=gene-LLC55_RS16525;Dbxref=Genbank:WP_069964534.1;Name=WP_069964534.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS16525;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_069964534.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3543103 3543402 . - . ID=gene-LLC55_RS16530;Name=LLC55_RS16530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16530;old_locus_tag=LLC55_16545 NZ_CP086200.1 Protein Homology CDS 3543103 3543402 . - 0 ID=cds-WP_011408491.1-3;Parent=gene-LLC55_RS16530;Dbxref=Genbank:WP_011408491.1;Name=WP_011408491.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408500.1;locus_tag=LLC55_RS16530;product=hypothetical protein;protein_id=WP_011408491.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3543406 3543600 . - . ID=gene-LLC55_RS16535;Name=LLC55_RS16535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16535;old_locus_tag=LLC55_16550 NZ_CP086200.1 GeneMarkS-2+ CDS 3543406 3543600 . - 0 ID=cds-WP_041182100.1-2;Parent=gene-LLC55_RS16535;Dbxref=Genbank:WP_041182100.1;Name=WP_041182100.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16535;product=hypothetical protein;protein_id=WP_041182100.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3543869 3547582 . - . ID=gene-LLC55_RS16540;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS16540;old_locus_tag=LLC55_16555 NZ_CP086200.1 Protein Homology CDS 3543869 3547582 . - 0 ID=cds-WP_011408518.1;Parent=gene-LLC55_RS16540;Dbxref=Genbank:WP_011408518.1;Name=WP_011408518.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS16540;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_011408518.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3547925 3548258 . + . ID=gene-LLC55_RS16545;Name=LLC55_RS16545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16545;old_locus_tag=LLC55_16560;partial=true;pseudo=true;start_range=.,3547925 NZ_CP086200.1 Protein Homology CDS 3547925 3548258 . + 0 ID=cds-LLC55_RS16545;Parent=gene-LLC55_RS16545;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS16545;partial=true;product=transposase;pseudo=true;start_range=.,3547925;transl_table=11 NZ_CP086200.1 RefSeq gene 3548887 3549650 . - . ID=gene-LLC55_RS16550;Name=LLC55_RS16550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16550;old_locus_tag=LLC55_16565 NZ_CP086200.1 Protein Homology CDS 3549335 3549650 . - 0 ID=cds-WP_109181945.1-2;Parent=gene-LLC55_RS16550;Dbxref=Genbank:WP_109181945.1;Name=WP_109181945.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS16550;product=IS5 family transposase;protein_id=WP_109181945.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3548887 3549335 . - 2 ID=cds-WP_109181945.1-2;Parent=gene-LLC55_RS16550;Dbxref=Genbank:WP_109181945.1;Name=WP_109181945.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS16550;product=IS5 family transposase;protein_id=WP_109181945.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3549781 3550293 . + . ID=gene-LLC55_RS16555;Name=LLC55_RS16555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16555;old_locus_tag=LLC55_16570 NZ_CP086200.1 GeneMarkS-2+ CDS 3549781 3550293 . + 0 ID=cds-WP_011408516.1;Parent=gene-LLC55_RS16555;Dbxref=Genbank:WP_011408516.1;Name=WP_011408516.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16555;product=hypothetical protein;protein_id=WP_011408516.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3550907 3551230 . - . ID=gene-LLC55_RS16560;Name=LLC55_RS16560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16560;old_locus_tag=LLC55_16575 NZ_CP086200.1 GeneMarkS-2+ CDS 3550907 3551230 . - 0 ID=cds-WP_125168752.1;Parent=gene-LLC55_RS16560;Dbxref=Genbank:WP_125168752.1;Name=WP_125168752.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16560;product=hypothetical protein;protein_id=WP_125168752.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3551734 3552497 . - . ID=gene-LLC55_RS16565;Name=LLC55_RS16565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16565;old_locus_tag=LLC55_16580 NZ_CP086200.1 Protein Homology CDS 3552182 3552497 . - 0 ID=cds-WP_094187780.1-2;Parent=gene-LLC55_RS16565;Dbxref=Genbank:WP_094187780.1;Name=WP_094187780.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS16565;product=IS5 family transposase;protein_id=WP_094187780.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3551734 3552182 . - 2 ID=cds-WP_094187780.1-2;Parent=gene-LLC55_RS16565;Dbxref=Genbank:WP_094187780.1;Name=WP_094187780.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS16565;product=IS5 family transposase;protein_id=WP_094187780.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3552567 3552878 . + . ID=gene-LLC55_RS16570;Name=LLC55_RS16570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16570;old_locus_tag=LLC55_16585 NZ_CP086200.1 GeneMarkS-2+ CDS 3552567 3552878 . + 0 ID=cds-WP_125168751.1;Parent=gene-LLC55_RS16570;Dbxref=Genbank:WP_125168751.1;Name=WP_125168751.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16570;product=hypothetical protein;protein_id=WP_125168751.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3553000 3553182 . + . ID=gene-LLC55_RS16575;Name=LLC55_RS16575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16575;old_locus_tag=LLC55_16590 NZ_CP086200.1 Protein Homology CDS 3553000 3553182 . + 0 ID=cds-WP_011408511.1;Parent=gene-LLC55_RS16575;Dbxref=Genbank:WP_011408511.1;Name=WP_011408511.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408511.1;locus_tag=LLC55_RS16575;product=hypothetical protein;protein_id=WP_011408511.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3553307 3553936 . - . ID=gene-LLC55_RS16580;Name=LLC55_RS16580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16580;old_locus_tag=LLC55_16595 NZ_CP086200.1 Protein Homology CDS 3553307 3553936 . - 0 ID=cds-WP_069970101.1;Parent=gene-LLC55_RS16580;Dbxref=Genbank:WP_069970101.1;Name=WP_069970101.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023888.2;locus_tag=LLC55_RS16580;product=DUF3693 domain-containing protein;protein_id=WP_069970101.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3554249 3554461 . + . ID=gene-LLC55_RS16585;Name=LLC55_RS16585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16585;old_locus_tag=LLC55_16600 NZ_CP086200.1 Protein Homology CDS 3554249 3554461 . + 0 ID=cds-WP_011408508.1;Parent=gene-LLC55_RS16585;Dbxref=Genbank:WP_011408508.1;Name=WP_011408508.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378733.1;locus_tag=LLC55_RS16585;product=hypothetical protein;protein_id=WP_011408508.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3554442 3554627 . - . ID=gene-LLC55_RS16590;Name=LLC55_RS16590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16590;old_locus_tag=LLC55_16605 NZ_CP086200.1 GeneMarkS-2+ CDS 3554442 3554627 . - 0 ID=cds-WP_134953795.1;Parent=gene-LLC55_RS16590;Dbxref=Genbank:WP_134953795.1;Name=WP_134953795.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16590;product=hypothetical protein;protein_id=WP_134953795.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3554713 3555654 . + . ID=gene-LLC55_RS16595;Name=LLC55_RS16595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16595;old_locus_tag=LLC55_16610 NZ_CP086200.1 Protein Homology CDS 3554713 3555654 . + 0 ID=cds-WP_069959851.1;Parent=gene-LLC55_RS16595;Dbxref=Genbank:WP_069959851.1;Name=WP_069959851.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154894.1;locus_tag=LLC55_RS16595;product=inovirus-type Gp2 protein;protein_id=WP_069959851.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3555666 3555947 . + . ID=gene-LLC55_RS16600;Name=LLC55_RS16600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16600;old_locus_tag=LLC55_16615 NZ_CP086200.1 Protein Homology CDS 3555666 3555947 . + 0 ID=cds-WP_228329620.1;Parent=gene-LLC55_RS16600;Dbxref=Genbank:WP_228329620.1;Name=WP_228329620.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113168.1;locus_tag=LLC55_RS16600;product=G5P family DNA-binding protein;protein_id=WP_228329620.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3555951 3556154 . + . ID=gene-LLC55_RS16605;Name=LLC55_RS16605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16605;old_locus_tag=LLC55_16620 NZ_CP086200.1 Protein Homology CDS 3555951 3556154 . + 0 ID=cds-WP_042464854.1;Parent=gene-LLC55_RS16605;Dbxref=Genbank:WP_042464854.1;Name=WP_042464854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303325.1;locus_tag=LLC55_RS16605;product=hypothetical protein;protein_id=WP_042464854.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3556166 3556396 . + . ID=gene-LLC55_RS16610;Name=LLC55_RS16610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16610;old_locus_tag=LLC55_16625 NZ_CP086200.1 Protein Homology CDS 3556166 3556396 . + 0 ID=cds-WP_011347634.1;Parent=gene-LLC55_RS16610;Dbxref=Genbank:WP_011347634.1;Name=WP_011347634.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347634.1;locus_tag=LLC55_RS16610;product=major capsid protein;protein_id=WP_011347634.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3556977 3557939 . + . ID=gene-LLC55_RS16615;Name=LLC55_RS16615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16615;old_locus_tag=LLC55_16630 NZ_CP086200.1 GeneMarkS-2+ CDS 3556977 3557939 . + 0 ID=cds-WP_228329621.1;Parent=gene-LLC55_RS16615;Dbxref=Genbank:WP_228329621.1;Name=WP_228329621.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16615;product=hypothetical protein;protein_id=WP_228329621.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3557939 3558268 . + . ID=gene-LLC55_RS16620;Name=LLC55_RS16620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16620;old_locus_tag=LLC55_16635 NZ_CP086200.1 Protein Homology CDS 3557939 3558268 . + 0 ID=cds-WP_011408503.1;Parent=gene-LLC55_RS16620;Dbxref=Genbank:WP_011408503.1;Name=WP_011408503.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916429.1;locus_tag=LLC55_RS16620;product=DUF2523 domain-containing protein;protein_id=WP_011408503.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3558319 3559461 . + . ID=gene-LLC55_RS16625;Name=LLC55_RS16625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16625;old_locus_tag=LLC55_16640 NZ_CP086200.1 Protein Homology CDS 3558319 3559461 . + 0 ID=cds-WP_229001913.1;Parent=gene-LLC55_RS16625;Dbxref=Genbank:WP_229001913.1;Name=WP_229001913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969859.1;locus_tag=LLC55_RS16625;product=zonular occludens toxin domain-containing protein;protein_id=WP_229001913.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3559463 3560110 . + . ID=gene-LLC55_RS16630;Name=LLC55_RS16630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16630;old_locus_tag=LLC55_16645 NZ_CP086200.1 Protein Homology CDS 3559463 3560110 . + 0 ID=cds-WP_069959847.1;Parent=gene-LLC55_RS16630;Dbxref=Genbank:WP_069959847.1;Name=WP_069959847.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347630.1;locus_tag=LLC55_RS16630;product=TraX family protein;protein_id=WP_069959847.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3560271 3560564 . + . ID=gene-LLC55_RS16635;Name=LLC55_RS16635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16635;old_locus_tag=LLC55_16650 NZ_CP086200.1 Protein Homology CDS 3560271 3560564 . + 0 ID=cds-WP_069959846.1;Parent=gene-LLC55_RS16635;Dbxref=Genbank:WP_069959846.1;Name=WP_069959846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450393.1;locus_tag=LLC55_RS16635;product=hypothetical protein;protein_id=WP_069959846.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3560620 3560832 . + . ID=gene-LLC55_RS16640;Name=LLC55_RS16640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16640;old_locus_tag=LLC55_16655 NZ_CP086200.1 GeneMarkS-2+ CDS 3560620 3560832 . + 0 ID=cds-WP_113085484.1;Parent=gene-LLC55_RS16640;Dbxref=Genbank:WP_113085484.1;Name=WP_113085484.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16640;product=hypothetical protein;protein_id=WP_113085484.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3560857 3561168 . - . ID=gene-LLC55_RS16645;Name=LLC55_RS16645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16645;old_locus_tag=LLC55_16660 NZ_CP086200.1 Protein Homology CDS 3560857 3561168 . - 0 ID=cds-WP_069959845.1;Parent=gene-LLC55_RS16645;Dbxref=Genbank:WP_069959845.1;Name=WP_069959845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303305.1;locus_tag=LLC55_RS16645;product=chloride channel protein;protein_id=WP_069959845.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3561450 3561833 . - . ID=gene-LLC55_RS16650;Name=LLC55_RS16650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16650;old_locus_tag=LLC55_16665 NZ_CP086200.1 Protein Homology CDS 3561450 3561833 . - 0 ID=cds-WP_075242175.1;Parent=gene-LLC55_RS16650;Dbxref=Genbank:WP_075242175.1;Name=WP_075242175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408500.1;locus_tag=LLC55_RS16650;product=hypothetical protein;protein_id=WP_075242175.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3562033 3562293 . + . ID=gene-LLC55_RS16655;Name=LLC55_RS16655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16655;old_locus_tag=LLC55_16670 NZ_CP086200.1 Protein Homology CDS 3562033 3562293 . + 0 ID=cds-WP_075240059.1;Parent=gene-LLC55_RS16655;Dbxref=Genbank:WP_075240059.1;Name=WP_075240059.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023792.2;locus_tag=LLC55_RS16655;product=DUF3653 domain-containing protein;protein_id=WP_075240059.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3563402 3563572 . - . ID=gene-LLC55_RS16660;Name=LLC55_RS16660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16660;old_locus_tag=LLC55_16675 NZ_CP086200.1 Protein Homology CDS 3563402 3563572 . - 0 ID=cds-WP_080493496.1;Parent=gene-LLC55_RS16660;Dbxref=Genbank:WP_080493496.1;Name=WP_080493496.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017655.2;locus_tag=LLC55_RS16660;product=TraX family protein;protein_id=WP_080493496.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3563627 3564811 . - . ID=gene-LLC55_RS16665;Name=LLC55_RS16665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16665;old_locus_tag=LLC55_16680 NZ_CP086200.1 Protein Homology CDS 3563627 3564811 . - 0 ID=cds-WP_011258954.1;Parent=gene-LLC55_RS16665;Dbxref=Genbank:WP_011258954.1;Name=WP_011258954.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490399.1;locus_tag=LLC55_RS16665;product=hypothetical protein;protein_id=WP_011258954.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3564808 3565128 . - . ID=gene-LLC55_RS16670;Name=LLC55_RS16670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16670;old_locus_tag=LLC55_16685 NZ_CP086200.1 Protein Homology CDS 3564808 3565128 . - 0 ID=cds-WP_041182119.1;Parent=gene-LLC55_RS16670;Dbxref=Genbank:WP_041182119.1;Name=WP_041182119.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022194.2;locus_tag=LLC55_RS16670;product=DUF2523 family protein;protein_id=WP_041182119.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3565130 3566359 . - . ID=gene-LLC55_RS16675;Name=LLC55_RS16675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16675;old_locus_tag=LLC55_16690 NZ_CP086200.1 Protein Homology CDS 3565130 3566359 . - 0 ID=cds-WP_228329623.1;Parent=gene-LLC55_RS16675;Dbxref=Genbank:WP_228329623.1;Name=WP_228329623.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490395.1;locus_tag=LLC55_RS16675;product=hypothetical protein;protein_id=WP_228329623.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3566721 3566960 . - . ID=gene-LLC55_RS16680;Name=LLC55_RS16680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16680;old_locus_tag=LLC55_16695 NZ_CP086200.1 Protein Homology CDS 3566721 3566960 . - 0 ID=cds-WP_011408495.1;Parent=gene-LLC55_RS16680;Dbxref=Genbank:WP_011408495.1;Name=WP_011408495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490393.1;locus_tag=LLC55_RS16680;product=hypothetical protein;protein_id=WP_011408495.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3567324 3567623 . - . ID=gene-LLC55_RS16685;Name=LLC55_RS16685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16685;old_locus_tag=LLC55_16700 NZ_CP086200.1 Protein Homology CDS 3567324 3567623 . - 0 ID=cds-WP_011408494.1;Parent=gene-LLC55_RS16685;Dbxref=Genbank:WP_011408494.1;Name=WP_011408494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408494.1;locus_tag=LLC55_RS16685;product=single-stranded DNA-binding protein;protein_id=WP_011408494.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3567728 3568642 . - . ID=gene-LLC55_RS16690;Name=LLC55_RS16690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16690;old_locus_tag=LLC55_16705 NZ_CP086200.1 Protein Homology CDS 3567728 3568642 . - 0 ID=cds-WP_012444936.1;Parent=gene-LLC55_RS16690;Dbxref=Genbank:WP_012444936.1;Name=WP_012444936.1;Ontology_term=GO:0006270,GO:0003677,GO:0003916;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA replication initiation|0006270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258952.1;locus_tag=LLC55_RS16690;product=replication initiation factor domain-containing protein;protein_id=WP_012444936.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3568937 3569140 . - . ID=gene-LLC55_RS16695;Name=LLC55_RS16695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16695;old_locus_tag=LLC55_16710 NZ_CP086200.1 Protein Homology CDS 3568937 3569140 . - 0 ID=cds-WP_012444935.1;Parent=gene-LLC55_RS16695;Dbxref=Genbank:WP_012444935.1;Name=WP_012444935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408508.1;locus_tag=LLC55_RS16695;product=hypothetical protein;protein_id=WP_012444935.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3569140 3569325 . - . ID=gene-LLC55_RS16700;Name=LLC55_RS16700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16700;old_locus_tag=LLC55_16715 NZ_CP086200.1 Protein Homology CDS 3569140 3569325 . - 0 ID=cds-WP_041182117.1;Parent=gene-LLC55_RS16700;Dbxref=Genbank:WP_041182117.1;Name=WP_041182117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408509.1;locus_tag=LLC55_RS16700;product=hypothetical protein;protein_id=WP_041182117.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3570219 3570998 . + . ID=gene-LLC55_RS16705;Name=LLC55_RS16705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16705;old_locus_tag=LLC55_16725 NZ_CP086200.1 Protein Homology CDS 3570219 3570998 . + 0 ID=cds-WP_011258951.1;Parent=gene-LLC55_RS16705;Dbxref=Genbank:WP_011258951.1;Name=WP_011258951.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258951.1;locus_tag=LLC55_RS16705;product=DUF4990 domain-containing protein;protein_id=WP_011258951.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3571546 3574845 . + . ID=gene-LLC55_RS16710;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS16710;old_locus_tag=LLC55_16730 NZ_CP086200.1 Protein Homology CDS 3571546 3574845 . + 0 ID=cds-WP_069959844.1;Parent=gene-LLC55_RS16710;Dbxref=Genbank:WP_069959844.1;Name=WP_069959844.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS16710;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_069959844.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3575113 3575307 . + . ID=gene-LLC55_RS16715;Name=LLC55_RS16715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16715;old_locus_tag=LLC55_16735 NZ_CP086200.1 GeneMarkS-2+ CDS 3575113 3575307 . + 0 ID=cds-WP_042464821.1-2;Parent=gene-LLC55_RS16715;Dbxref=Genbank:WP_042464821.1;Name=WP_042464821.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16715;product=hypothetical protein;protein_id=WP_042464821.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3575311 3575610 . + . ID=gene-LLC55_RS16720;Name=LLC55_RS16720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16720;old_locus_tag=LLC55_16740 NZ_CP086200.1 Protein Homology CDS 3575311 3575610 . + 0 ID=cds-WP_011408491.1-4;Parent=gene-LLC55_RS16720;Dbxref=Genbank:WP_011408491.1;Name=WP_011408491.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408500.1;locus_tag=LLC55_RS16720;product=hypothetical protein;protein_id=WP_011408491.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3575835 3579689 . + . ID=gene-LLC55_RS16725;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS16725;old_locus_tag=LLC55_16745 NZ_CP086200.1 Protein Homology CDS 3575835 3579689 . + 0 ID=cds-WP_069964532.1;Parent=gene-LLC55_RS16725;Dbxref=Genbank:WP_069964532.1;Name=WP_069964532.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS16725;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_069964532.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3579782 3580105 . - . ID=gene-LLC55_RS16730;Name=LLC55_RS16730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16730;old_locus_tag=LLC55_16750;partial=true;pseudo=true;start_range=.,3579782 NZ_CP086200.1 Protein Homology CDS 3579782 3580105 . - 0 ID=cds-LLC55_RS16730;Parent=gene-LLC55_RS16730;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168443.1;locus_tag=LLC55_RS16730;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3579782;transl_table=11 NZ_CP086200.1 RefSeq gene 3580275 3580895 . - . ID=gene-LLC55_RS16735;Name=hisIE;gbkey=Gene;gene=hisIE;gene_biotype=protein_coding;locus_tag=LLC55_RS16735;old_locus_tag=LLC55_16755 NZ_CP086200.1 Protein Homology CDS 3580275 3580895 . - 0 ID=cds-WP_011258948.1;Parent=gene-LLC55_RS16735;Dbxref=Genbank:WP_011258948.1;Name=WP_011258948.1;Ontology_term=GO:0000105,GO:0004635,GO:0004636;gbkey=CDS;gene=hisIE;go_function=phosphoribosyl-AMP cyclohydrolase activity|0004635||IEA,phosphoribosyl-ATP diphosphatase activity|0004636||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507577.1;locus_tag=LLC55_RS16735;product=bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE;protein_id=WP_011258948.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3580885 3581661 . - . ID=gene-LLC55_RS16740;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=LLC55_RS16740;old_locus_tag=LLC55_16760 NZ_CP086200.1 Protein Homology CDS 3580885 3581661 . - 0 ID=cds-WP_011258947.1;Parent=gene-LLC55_RS16740;Dbxref=Genbank:WP_011258947.1;Name=WP_011258947.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisF;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503177.1;locus_tag=LLC55_RS16740;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_011258947.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3581655 3582389 . - . ID=gene-LLC55_RS16745;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=LLC55_RS16745;old_locus_tag=LLC55_16765 NZ_CP086200.1 Protein Homology CDS 3581655 3582389 . - 0 ID=cds-WP_011258946.1;Parent=gene-LLC55_RS16745;Dbxref=Genbank:WP_011258946.1;Name=WP_011258946.1;Ontology_term=GO:0000105,GO:0003949;gbkey=CDS;gene=hisA;go_function=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|0003949||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155313.1;locus_tag=LLC55_RS16745;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase;protein_id=WP_011258946.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3582386 3582988 . - . ID=gene-LLC55_RS16750;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=LLC55_RS16750;old_locus_tag=LLC55_16770 NZ_CP086200.1 Protein Homology CDS 3582386 3582988 . - 0 ID=cds-WP_011258945.1;Parent=gene-LLC55_RS16750;Dbxref=Genbank:WP_011258945.1;Name=WP_011258945.1;Ontology_term=GO:0000105,GO:0000107,GO:0016884;gbkey=CDS;gene=hisH;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA,carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor|0016884||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302508.1;locus_tag=LLC55_RS16750;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_011258945.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3582985 3584112 . - . ID=gene-LLC55_RS16755;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=LLC55_RS16755;old_locus_tag=LLC55_16775 NZ_CP086200.1 Protein Homology CDS 3582985 3584112 . - 0 ID=cds-WP_011258944.1;Parent=gene-LLC55_RS16755;Dbxref=Genbank:WP_011258944.1;Name=WP_011258944.1;Ontology_term=GO:0000105,GO:0004401,GO:0004424;gbkey=CDS;gene=hisB;go_function=histidinol-phosphatase activity|0004401||IEA,imidazoleglycerol-phosphate dehydratase activity|0004424||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571443.1;locus_tag=LLC55_RS16755;product=bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;protein_id=WP_011258944.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3584109 3585200 . - . ID=gene-LLC55_RS16760;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=LLC55_RS16760;old_locus_tag=LLC55_16780 NZ_CP086200.1 Protein Homology CDS 3584109 3585200 . - 0 ID=cds-WP_011408488.1;Parent=gene-LLC55_RS16760;Dbxref=Genbank:WP_011408488.1;Name=WP_011408488.1;Ontology_term=GO:0000105,GO:0004400;gbkey=CDS;gene=hisC;go_function=histidinol-phosphate transaminase activity|0004400||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090046.1;locus_tag=LLC55_RS16760;product=histidinol-phosphate transaminase;protein_id=WP_011408488.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3585197 3586492 . - . ID=gene-LLC55_RS16765;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=LLC55_RS16765;old_locus_tag=LLC55_16785 NZ_CP086200.1 Protein Homology CDS 3585197 3586492 . - 0 ID=cds-WP_011258942.1;Parent=gene-LLC55_RS16765;Dbxref=Genbank:WP_011258942.1;Name=WP_011258942.1;Ontology_term=GO:0000105,GO:0004399;gbkey=CDS;gene=hisD;go_function=histidinol dehydrogenase activity|0004399||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347185.1;locus_tag=LLC55_RS16765;product=histidinol dehydrogenase;protein_id=WP_011258942.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3586489 3587403 . - . ID=gene-LLC55_RS16770;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=LLC55_RS16770;old_locus_tag=LLC55_16790 NZ_CP086200.1 Protein Homology CDS 3586489 3587403 . - 0 ID=cds-WP_011258941.1;Parent=gene-LLC55_RS16770;Dbxref=Genbank:WP_011258941.1;Name=WP_011258941.1;Ontology_term=GO:0000105,GO:0003879;gbkey=CDS;gene=hisG;go_function=ATP phosphoribosyltransferase activity|0003879||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237692.1;locus_tag=LLC55_RS16770;product=ATP phosphoribosyltransferase;protein_id=WP_011258941.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3587413 3587739 . - . ID=gene-LLC55_RS16775;Name=LLC55_RS16775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16775;old_locus_tag=LLC55_16795 NZ_CP086200.1 Protein Homology CDS 3587413 3587739 . - 0 ID=cds-WP_011258940.1;Parent=gene-LLC55_RS16775;Dbxref=Genbank:WP_011258940.1;Name=WP_011258940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155319.1;locus_tag=LLC55_RS16775;product=YerC/YecD family TrpR-related protein;protein_id=WP_011258940.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3588053 3588851 . + . ID=gene-LLC55_RS16780;Name=LLC55_RS16780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16780;old_locus_tag=LLC55_16800 NZ_CP086200.1 Protein Homology CDS 3588053 3588324 . + 0 ID=cds-WP_094187798.1;Parent=gene-LLC55_RS16780;Dbxref=Genbank:WP_094187798.1;Name=WP_094187798.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS16780;product=IS5 family transposase;protein_id=WP_094187798.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3588323 3588851 . + 1 ID=cds-WP_094187798.1;Parent=gene-LLC55_RS16780;Dbxref=Genbank:WP_094187798.1;Name=WP_094187798.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS16780;product=IS5 family transposase;protein_id=WP_094187798.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3588867 3588943 . - . ID=gene-LLC55_RS16785;Name=LLC55_RS16785;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS16785;old_locus_tag=LLC55_16805 NZ_CP086200.1 cmsearch ncRNA 3588867 3588943 . - . ID=rna-LLC55_RS16785;Parent=gene-LLC55_RS16785;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16785;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3588867 3588943 . - . ID=exon-LLC55_RS16785-1;Parent=rna-LLC55_RS16785;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16785;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3589357 3590769 . - . ID=gene-LLC55_RS16790;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=LLC55_RS16790;old_locus_tag=LLC55_16810 NZ_CP086200.1 Protein Homology CDS 3589357 3590769 . - 0 ID=cds-WP_012444952.1;Parent=gene-LLC55_RS16790;Dbxref=Genbank:WP_012444952.1;Name=WP_012444952.1;Ontology_term=GO:0006427,GO:0004821,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155320.1;locus_tag=LLC55_RS16790;product=histidine--tRNA ligase;protein_id=WP_012444952.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3590967 3591635 . + . ID=gene-LLC55_RS16795;Name=LLC55_RS16795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16795;old_locus_tag=LLC55_16815;pseudo=true NZ_CP086200.1 Protein Homology CDS 3590967 3591635 . + 0 ID=cds-LLC55_RS16795;Parent=gene-LLC55_RS16795;Note=frameshifted;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159460.1;locus_tag=LLC55_RS16795;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3592034 3592777 . - . ID=gene-LLC55_RS16800;Name=LLC55_RS16800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16800;old_locus_tag=LLC55_16820 NZ_CP086200.1 Protein Homology CDS 3592034 3592777 . - 0 ID=cds-WP_041182115.1;Parent=gene-LLC55_RS16800;Dbxref=Genbank:WP_041182115.1;Name=WP_041182115.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155322.1;locus_tag=LLC55_RS16800;product=murein L%2CD-transpeptidase catalytic domain family protein;protein_id=WP_041182115.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3592880 3594184 . - . ID=gene-LLC55_RS16805;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=LLC55_RS16805;old_locus_tag=LLC55_16825 NZ_CP086200.1 Protein Homology CDS 3592880 3594184 . - 0 ID=cds-WP_011258935.1;Parent=gene-LLC55_RS16805;Dbxref=Genbank:WP_011258935.1;Name=WP_011258935.1;Ontology_term=GO:0009088,GO:0004795;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915357.1;locus_tag=LLC55_RS16805;product=threonine synthase;protein_id=WP_011258935.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3594346 3594660 . + . ID=gene-LLC55_RS16810;Name=LLC55_RS16810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16810;old_locus_tag=LLC55_16830 NZ_CP086200.1 Protein Homology CDS 3594346 3594660 . + 0 ID=cds-WP_024710669.1;Parent=gene-LLC55_RS16810;Dbxref=Genbank:WP_024710669.1;Name=WP_024710669.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155324.1;locus_tag=LLC55_RS16810;product=EthD family reductase;protein_id=WP_024710669.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3595384 3597038 . - . ID=gene-LLC55_RS16815;Name=LLC55_RS16815;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16815;old_locus_tag=LLC55_16835;pseudo=true NZ_CP086200.1 Protein Homology CDS 3595384 3597038 . - 0 ID=cds-LLC55_RS16815;Parent=gene-LLC55_RS16815;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155325.1;locus_tag=LLC55_RS16815;product=tannase/feruloyl esterase family alpha/beta hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3597596 3598564 . - . ID=gene-LLC55_RS16820;Name=LLC55_RS16820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16820;old_locus_tag=LLC55_16840 NZ_CP086200.1 Protein Homology CDS 3597596 3598564 . - 0 ID=cds-WP_075242188.1;Parent=gene-LLC55_RS16820;Dbxref=Genbank:WP_075242188.1;Name=WP_075242188.1;Ontology_term=GO:0006566,GO:0004413,GO:0005524;gbkey=CDS;go_function=homoserine kinase activity|0004413||IEA,ATP binding|0005524||IEA;go_process=threonine metabolic process|0006566||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258933.1;locus_tag=LLC55_RS16820;product=homoserine kinase;protein_id=WP_075242188.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3598561 3601068 . - . ID=gene-LLC55_RS16825;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=LLC55_RS16825;old_locus_tag=LLC55_16845 NZ_CP086200.1 Protein Homology CDS 3598561 3601068 . - 0 ID=cds-WP_075242187.1;Parent=gene-LLC55_RS16825;Dbxref=Genbank:WP_075242187.1;Name=WP_075242187.1;Ontology_term=GO:0008652,GO:0009067,GO:0004072,GO:0004412,GO:0050661;gbkey=CDS;gene=thrA;go_function=aspartate kinase activity|0004072||IEA,homoserine dehydrogenase activity|0004412||IEA,NADP binding|0050661||IEA;go_process=amino acid biosynthetic process|0008652||IEA,aspartate family amino acid biosynthetic process|0009067||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113111.1;locus_tag=LLC55_RS16825;product=bifunctional aspartate kinase/homoserine dehydrogenase I;protein_id=WP_075242187.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3601661 3602106 . - . ID=gene-LLC55_RS16830;Name=LLC55_RS16830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16830;old_locus_tag=LLC55_16850;pseudo=true NZ_CP086200.1 Protein Homology CDS 3601661 3602106 . - 0 ID=cds-LLC55_RS16830;Parent=gene-LLC55_RS16830;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115243.1;locus_tag=LLC55_RS16830;product=tryptophan-rich sensory protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3602160 3602236 . - . ID=gene-LLC55_RS16835;Name=LLC55_RS16835;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS16835;old_locus_tag=LLC55_16855 NZ_CP086200.1 tRNAscan-SE tRNA 3602160 3602236 . - . ID=rna-LLC55_RS16835;Parent=gene-LLC55_RS16835;anticodon=(pos:complement(3602200..3602202));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16835;product=tRNA-Arg NZ_CP086200.1 tRNAscan-SE exon 3602160 3602236 . - . ID=exon-LLC55_RS16835-1;Parent=rna-LLC55_RS16835;anticodon=(pos:complement(3602200..3602202));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS16835;product=tRNA-Arg NZ_CP086200.1 RefSeq gene 3602371 3603903 . + . ID=gene-LLC55_RS16840;Name=LLC55_RS16840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16840;old_locus_tag=LLC55_16860 NZ_CP086200.1 Protein Homology CDS 3602371 3603903 . + 0 ID=cds-WP_044756815.1;Parent=gene-LLC55_RS16840;Dbxref=Genbank:WP_044756815.1;Name=WP_044756815.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507550.1;locus_tag=LLC55_RS16840;product=aldehyde dehydrogenase family protein;protein_id=WP_044756815.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3604492 3604776 . + . ID=gene-LLC55_RS16850;Name=LLC55_RS16850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16850;old_locus_tag=LLC55_16870 NZ_CP086200.1 Protein Homology CDS 3604492 3604776 . + 0 ID=cds-WP_011408481.1;Parent=gene-LLC55_RS16850;Dbxref=Genbank:WP_011408481.1;Name=WP_011408481.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916283.1;locus_tag=LLC55_RS16850;product=DUF4190 domain-containing protein;protein_id=WP_011408481.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3604779 3605546 . + . ID=gene-LLC55_RS16855;Name=LLC55_RS16855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16855;old_locus_tag=LLC55_16875 NZ_CP086200.1 Protein Homology CDS 3604779 3605546 . + 0 ID=cds-WP_164994133.1;Parent=gene-LLC55_RS16855;Dbxref=Genbank:WP_164994133.1;Name=WP_164994133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472255.1;locus_tag=LLC55_RS16855;product=class I SAM-dependent methyltransferase;protein_id=WP_164994133.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3605552 3606607 . + . ID=gene-LLC55_RS16860;Name=LLC55_RS16860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16860;old_locus_tag=LLC55_16880 NZ_CP086200.1 Protein Homology CDS 3605552 3606607 . + 0 ID=cds-WP_075242186.1;Parent=gene-LLC55_RS16860;Dbxref=Genbank:WP_075242186.1;Name=WP_075242186.1;Ontology_term=GO:0006222,GO:0004152,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=dihydroorotate dehydrogenase activity|0004152||IEA;go_process=UMP biosynthetic process|0006222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090028.1;locus_tag=LLC55_RS16860;product=quinone-dependent dihydroorotate dehydrogenase;protein_id=WP_075242186.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3606604 3607656 . + . ID=gene-LLC55_RS16865;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=LLC55_RS16865;old_locus_tag=LLC55_16885 NZ_CP086200.1 Protein Homology CDS 3606604 3607656 . + 0 ID=cds-WP_011408479.1;Parent=gene-LLC55_RS16865;Dbxref=Genbank:WP_011408479.1;Name=WP_011408479.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503151.1;locus_tag=LLC55_RS16865;product=UDP-N-acetylmuramate dehydrogenase;protein_id=WP_011408479.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3607650 3608561 . + . ID=gene-LLC55_RS16870;Name=LLC55_RS16870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16870;old_locus_tag=LLC55_16890 NZ_CP086200.1 Protein Homology CDS 3607650 3608561 . + 0 ID=cds-WP_012444967.1;Parent=gene-LLC55_RS16870;Dbxref=Genbank:WP_012444967.1;Name=WP_012444967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813681.1;locus_tag=LLC55_RS16870;product=DMT family transporter;protein_id=WP_012444967.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3608700 3608874 . + . ID=gene-LLC55_RS16875;Name=LLC55_RS16875;end_range=3608874,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16875;old_locus_tag=LLC55_16895;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3608700 3608874 . + 0 ID=cds-LLC55_RS16875;Parent=gene-LLC55_RS16875;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3608874,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851273.1;locus_tag=LLC55_RS16875;partial=true;product=aspartate/glutamate racemase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3609446 3610402 . - . ID=gene-LLC55_RS16880;Name=LLC55_RS16880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16880;old_locus_tag=LLC55_16900 NZ_CP086200.1 Protein Homology CDS 3609446 3610402 . - 0 ID=cds-WP_228329624.1;Parent=gene-LLC55_RS16880;Dbxref=Genbank:WP_228329624.1;Name=WP_228329624.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_082322974.1;locus_tag=LLC55_RS16880;product=IS30 family transposase;protein_id=WP_228329624.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3610550 3611728 . + . ID=gene-LLC55_RS16885;Name=LLC55_RS16885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16885;old_locus_tag=LLC55_16905;partial=true;pseudo=true;start_range=.,3610550 NZ_CP086200.1 Protein Homology CDS 3610550 3611728 . + 0 ID=cds-LLC55_RS16885;Parent=gene-LLC55_RS16885;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300451.1;locus_tag=LLC55_RS16885;partial=true;product=MFS transporter;pseudo=true;start_range=.,3610550;transl_table=11 NZ_CP086200.1 RefSeq gene 3611732 3611807 . - . ID=gene-LLC55_RS16890;Name=LLC55_RS16890;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS16890;old_locus_tag=LLC55_16910 NZ_CP086200.1 cmsearch ncRNA 3611732 3611807 . - . ID=rna-LLC55_RS16890;Parent=gene-LLC55_RS16890;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16890;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3611732 3611807 . - . ID=exon-LLC55_RS16890-1;Parent=rna-LLC55_RS16890;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16890;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3611869 3612600 . - . ID=gene-LLC55_RS16895;Name=LLC55_RS16895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16895;old_locus_tag=LLC55_16915 NZ_CP086200.1 Protein Homology CDS 3611869 3612600 . - 0 ID=cds-WP_069959842.1;Parent=gene-LLC55_RS16895;Dbxref=Genbank:WP_069959842.1;Name=WP_069959842.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571247.1;locus_tag=LLC55_RS16895;product=phosphatase PAP2 family protein;protein_id=WP_069959842.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3612581 3613846 . - . ID=gene-LLC55_RS16900;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;gene_synonym=gcpE;locus_tag=LLC55_RS16900;old_locus_tag=LLC55_16920 NZ_CP086200.1 Protein Homology CDS 3612581 3613846 . - 0 ID=cds-WP_011408474.1;Parent=gene-LLC55_RS16900;Dbxref=Genbank:WP_011408474.1;Name=WP_011408474.1;Ontology_term=GO:0044237,GO:0046429;gbkey=CDS;gene=ispG;go_function=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|0046429||IEA;go_process=cellular metabolic process|0044237||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300453.1;locus_tag=LLC55_RS16900;product=flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;protein_id=WP_011408474.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3613967 3615193 . + . ID=gene-LLC55_RS16905;Name=LLC55_RS16905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16905;old_locus_tag=LLC55_16925 NZ_CP086200.1 Protein Homology CDS 3613967 3615193 . + 0 ID=cds-WP_011408473.1;Parent=gene-LLC55_RS16905;Dbxref=Genbank:WP_011408473.1;Name=WP_011408473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158053.1;locus_tag=LLC55_RS16905;product=ATP-binding protein;protein_id=WP_011408473.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3615190 3615756 . + . ID=gene-LLC55_RS16910;Name=LLC55_RS16910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16910;old_locus_tag=LLC55_16930 NZ_CP086200.1 Protein Homology CDS 3615190 3615756 . + 0 ID=cds-WP_011258919.1;Parent=gene-LLC55_RS16910;Dbxref=Genbank:WP_011258919.1;Name=WP_011258919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347151.1;locus_tag=LLC55_RS16910;product=response regulator transcription factor;protein_id=WP_011258919.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3615808 3616866 . - . ID=gene-LLC55_RS16915;Name=LLC55_RS16915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16915;old_locus_tag=LLC55_16935 NZ_CP086200.1 Protein Homology CDS 3615808 3616866 . - 0 ID=cds-WP_228329625.1;Parent=gene-LLC55_RS16915;Dbxref=Genbank:WP_228329625.1;Name=WP_228329625.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408472.1;locus_tag=LLC55_RS16915;product=IS630 family transposase;protein_id=WP_228329625.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3616997 3617073 . + . ID=gene-LLC55_RS16920;Name=LLC55_RS16920;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS16920;old_locus_tag=LLC55_16940 NZ_CP086200.1 cmsearch ncRNA 3616997 3617073 . + . ID=rna-LLC55_RS16920;Parent=gene-LLC55_RS16920;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16920;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3616997 3617073 . + . ID=exon-LLC55_RS16920-1;Parent=rna-LLC55_RS16920;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS16920;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3617078 3619438 . - . ID=gene-LLC55_RS16925;Name=LLC55_RS16925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16925;old_locus_tag=LLC55_16945 NZ_CP086200.1 Protein Homology CDS 3617078 3619438 . - 0 ID=cds-WP_075239398.1;Parent=gene-LLC55_RS16925;Dbxref=Genbank:WP_075239398.1;Name=WP_075239398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090230.1;locus_tag=LLC55_RS16925;product=Tex family protein;protein_id=WP_075239398.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3619541 3619768 . - . ID=gene-LLC55_RS16930;Name=LLC55_RS16930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16930;old_locus_tag=LLC55_16950 NZ_CP086200.1 Protein Homology CDS 3619541 3619768 . - 0 ID=cds-WP_011408471.1;Parent=gene-LLC55_RS16930;Dbxref=Genbank:WP_011408471.1;Name=WP_011408471.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157548.1;locus_tag=LLC55_RS16930;product=hypothetical protein;protein_id=WP_011408471.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3619958 3621169 . + . ID=gene-LLC55_RS16935;Name=LLC55_RS16935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16935;old_locus_tag=LLC55_16955 NZ_CP086200.1 Protein Homology CDS 3619958 3621169 . + 0 ID=cds-WP_011258915.1;Parent=gene-LLC55_RS16935;Dbxref=Genbank:WP_011258915.1;Name=WP_011258915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258915.1;locus_tag=LLC55_RS16935;product=FAD-dependent oxidoreductase;protein_id=WP_011258915.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3621127 3621558 . - . ID=gene-LLC55_RS16940;Name=LLC55_RS16940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16940;old_locus_tag=LLC55_16960 NZ_CP086200.1 Protein Homology CDS 3621127 3621558 . - 0 ID=cds-WP_228329757.1;Parent=gene-LLC55_RS16940;Dbxref=Genbank:WP_228329757.1;Name=WP_228329757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904408.1;locus_tag=LLC55_RS16940;product=hypothetical protein;protein_id=WP_228329757.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3621612 3621809 . - . ID=gene-LLC55_RS16945;Name=LLC55_RS16945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16945;old_locus_tag=LLC55_16965 NZ_CP086200.1 Protein Homology CDS 3621612 3621809 . - 0 ID=cds-WP_011258914.1;Parent=gene-LLC55_RS16945;Dbxref=Genbank:WP_011258914.1;Name=WP_011258914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482814.1;locus_tag=LLC55_RS16945;product=PspC domain-containing protein;protein_id=WP_011258914.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3621924 3623000 . - . ID=gene-LLC55_RS16950;Name=LLC55_RS16950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16950;old_locus_tag=LLC55_16970 NZ_CP086200.1 Protein Homology CDS 3621924 3623000 . - 0 ID=cds-WP_011258913.1;Parent=gene-LLC55_RS16950;Dbxref=Genbank:WP_011258913.1;Name=WP_011258913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301741.1;locus_tag=LLC55_RS16950;product=class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC;protein_id=WP_011258913.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3622997 3624223 . - . ID=gene-LLC55_RS16955;Name=phaE;gbkey=Gene;gene=phaE;gene_biotype=protein_coding;locus_tag=LLC55_RS16955;old_locus_tag=LLC55_16975 NZ_CP086200.1 Protein Homology CDS 3622997 3624223 . - 0 ID=cds-WP_012444981.1;Parent=gene-LLC55_RS16955;Dbxref=Genbank:WP_012444981.1;Name=WP_012444981.1;gbkey=CDS;gene=phaE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463162.1;locus_tag=LLC55_RS16955;product=class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE;protein_id=WP_012444981.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3624279 3624941 . - . ID=gene-LLC55_RS16960;Name=LLC55_RS16960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16960;old_locus_tag=LLC55_16980 NZ_CP086200.1 Protein Homology CDS 3624279 3624941 . - 0 ID=cds-WP_178380571.1;Parent=gene-LLC55_RS16960;Dbxref=Genbank:WP_178380571.1;Name=WP_178380571.1;Ontology_term=GO:0008654,GO:0016780,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172041.1;locus_tag=LLC55_RS16960;product=CDP-alcohol phosphatidyltransferase family protein;protein_id=WP_178380571.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3625026 3625784 . + . ID=gene-LLC55_RS16965;Name=LLC55_RS16965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16965;old_locus_tag=LLC55_16985 NZ_CP086200.1 Protein Homology CDS 3625026 3625784 . + 0 ID=cds-WP_011258910.1;Parent=gene-LLC55_RS16965;Dbxref=Genbank:WP_011258910.1;Name=WP_011258910.1;Ontology_term=GO:0003858;gbkey=CDS;go_function=3-hydroxybutyrate dehydrogenase activity|0003858||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157555.1;locus_tag=LLC55_RS16965;product=3-hydroxybutyrate dehydrogenase;protein_id=WP_011258910.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3626095 3626259 . + . ID=gene-LLC55_RS16970;Name=LLC55_RS16970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16970;old_locus_tag=LLC55_16990 NZ_CP086200.1 GeneMarkS-2+ CDS 3626095 3626259 . + 0 ID=cds-WP_011258909.1;Parent=gene-LLC55_RS16970;Dbxref=Genbank:WP_011258909.1;Name=WP_011258909.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16970;product=hypothetical protein;protein_id=WP_011258909.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3626326 3627645 . - . ID=gene-LLC55_RS16975;Name=LLC55_RS16975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16975;old_locus_tag=LLC55_16995 NZ_CP086200.1 Protein Homology CDS 3626326 3627645 . - 0 ID=cds-WP_109181940.1;Parent=gene-LLC55_RS16975;Dbxref=Genbank:WP_109181940.1;Name=WP_109181940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS16975;product=IS701-like element ISXo15 family transposase;protein_id=WP_109181940.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3627726 3628133 . - . ID=gene-LLC55_RS16980;Name=LLC55_RS16980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16980;old_locus_tag=LLC55_17000 NZ_CP086200.1 Protein Homology CDS 3627726 3628133 . - 0 ID=cds-WP_069959840.1;Parent=gene-LLC55_RS16980;Dbxref=Genbank:WP_069959840.1;Name=WP_069959840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372294.1;locus_tag=LLC55_RS16980;product=hypothetical protein;protein_id=WP_069959840.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3628254 3628445 . - . ID=gene-LLC55_RS16985;Name=LLC55_RS16985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16985;old_locus_tag=LLC55_17005 NZ_CP086200.1 GeneMarkS-2+ CDS 3628254 3628445 . - 0 ID=cds-WP_075240038.1;Parent=gene-LLC55_RS16985;Dbxref=Genbank:WP_075240038.1;Name=WP_075240038.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS16985;product=hypothetical protein;protein_id=WP_075240038.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3628560 3628695 . + . ID=gene-LLC55_RS16990;Name=LLC55_RS16990;end_range=3628695,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS16990;old_locus_tag=LLC55_17010;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3628560 3628695 . + 0 ID=cds-LLC55_RS16990;Parent=gene-LLC55_RS16990;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3628695,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611322.1;locus_tag=LLC55_RS16990;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3628842 3629330 . - . ID=gene-LLC55_RS16995;Name=LLC55_RS16995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS16995;old_locus_tag=LLC55_17015 NZ_CP086200.1 Protein Homology CDS 3628842 3629330 . - 0 ID=cds-WP_011408466.1;Parent=gene-LLC55_RS16995;Dbxref=Genbank:WP_011408466.1;Name=WP_011408466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444982.1;locus_tag=LLC55_RS16995;product=8-oxo-dGTP diphosphatase;protein_id=WP_011408466.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3629415 3629924 . - . ID=gene-LLC55_RS17000;Name=LLC55_RS17000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17000;old_locus_tag=LLC55_17020 NZ_CP086200.1 Protein Homology CDS 3629415 3629924 . - 0 ID=cds-WP_011258907.1;Parent=gene-LLC55_RS17000;Dbxref=Genbank:WP_011258907.1;Name=WP_011258907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157557.1;locus_tag=LLC55_RS17000;product=DUF1249 domain-containing protein;protein_id=WP_011258907.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3630130 3630951 . - . ID=gene-LLC55_RS17005;Name=LLC55_RS17005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17005;old_locus_tag=LLC55_17025 NZ_CP086200.1 Protein Homology CDS 3630130 3630951 . - 0 ID=cds-WP_011408465.1;Parent=gene-LLC55_RS17005;Dbxref=Genbank:WP_011408465.1;Name=WP_011408465.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037311.1;locus_tag=LLC55_RS17005;product=kinase/pyrophosphorylase;protein_id=WP_011408465.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3631093 3633486 . + . ID=gene-LLC55_RS17010;Name=ppsA;gbkey=Gene;gene=ppsA;gene_biotype=protein_coding;locus_tag=LLC55_RS17010;old_locus_tag=LLC55_17030 NZ_CP086200.1 Protein Homology CDS 3631093 3633486 . + 0 ID=cds-WP_011258905.1;Parent=gene-LLC55_RS17010;Dbxref=Genbank:WP_011258905.1;Name=WP_011258905.1;Ontology_term=GO:0006090,GO:0016310,GO:0005524,GO:0008986,GO:0016772;gbkey=CDS;gene=ppsA;go_function=ATP binding|0005524||IEA,pyruvate%2C water dikinase activity|0008986||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=pyruvate metabolic process|0006090||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118687.1;locus_tag=LLC55_RS17010;product=phosphoenolpyruvate synthase;protein_id=WP_011258905.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3633486 3634472 . + . ID=gene-LLC55_RS17015;Name=LLC55_RS17015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17015;old_locus_tag=LLC55_17035 NZ_CP086200.1 Protein Homology CDS 3633486 3634472 . + 0 ID=cds-WP_011258904.1;Parent=gene-LLC55_RS17015;Dbxref=Genbank:WP_011258904.1;Name=WP_011258904.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157560.1;locus_tag=LLC55_RS17015;product=mechanosensitive ion channel;protein_id=WP_011258904.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3634684 3635268 . - . ID=gene-LLC55_RS17020;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=LLC55_RS17020;old_locus_tag=LLC55_17040 NZ_CP086200.1 Protein Homology CDS 3634684 3635268 . - 0 ID=cds-WP_011258903.1;Parent=gene-LLC55_RS17020;Dbxref=Genbank:WP_011258903.1;Name=WP_011258903.1;Ontology_term=GO:0000175,GO:0003676;gbkey=CDS;gene=orn;go_function=3'-5'-exoribonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373214.1;locus_tag=LLC55_RS17020;product=oligoribonuclease;protein_id=WP_011258903.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3635341 3635853 . - . ID=gene-LLC55_RS17025;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=LLC55_RS17025;old_locus_tag=LLC55_17045 NZ_CP086200.1 Protein Homology CDS 3635341 3635853 . - 0 ID=cds-WP_011258902.1;Parent=gene-LLC55_RS17025;Dbxref=Genbank:WP_011258902.1;Name=WP_011258902.1;Ontology_term=GO:0002100,GO:0008251,GO:0008270;gbkey=CDS;gene=tadA;go_function=tRNA-specific adenosine deaminase activity|0008251||IEA,zinc ion binding|0008270||IEA;go_process=tRNA wobble adenosine to inosine editing|0002100||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577150.1;locus_tag=LLC55_RS17025;product=tRNA adenosine(34) deaminase TadA;protein_id=WP_011258902.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3635850 3636317 . - . ID=gene-LLC55_RS17030;Name=mntR;gbkey=Gene;gene=mntR;gene_biotype=protein_coding;locus_tag=LLC55_RS17030;old_locus_tag=LLC55_17050 NZ_CP086200.1 Protein Homology CDS 3635850 3636317 . - 0 ID=cds-WP_011258901.1;Parent=gene-LLC55_RS17030;Dbxref=Genbank:WP_011258901.1;Name=WP_011258901.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0046914,GO:0046983;gbkey=CDS;gene=mntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transition metal ion binding|0046914||IEA,protein dimerization activity|0046983||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157563.1;locus_tag=LLC55_RS17030;product=manganese-binding transcriptional regulator MntR;protein_id=WP_011258901.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3636461 3637795 . + . ID=gene-LLC55_RS17035;Name=LLC55_RS17035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17035;old_locus_tag=LLC55_17055 NZ_CP086200.1 Protein Homology CDS 3636461 3637795 . + 0 ID=cds-WP_011408462.1;Parent=gene-LLC55_RS17035;Dbxref=Genbank:WP_011408462.1;Name=WP_011408462.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051299.1;locus_tag=LLC55_RS17035;product=Nramp family divalent metal transporter;protein_id=WP_011408462.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3638358 3638558 . + . ID=gene-LLC55_RS17040;Name=LLC55_RS17040;end_range=3638558,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17040;old_locus_tag=LLC55_17060;partial=true;pseudo=true;start_range=.,3638358 NZ_CP086200.1 Protein Homology CDS 3638358 3638558 . + 0 ID=cds-LLC55_RS17040;Parent=gene-LLC55_RS17040;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3638558,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922658.1;locus_tag=LLC55_RS17040;partial=true;product=response regulator transcription factor;pseudo=true;start_range=.,3638358;transl_table=11 NZ_CP086200.1 RefSeq gene 3638829 3639983 . + . ID=gene-LLC55_RS17045;Name=LLC55_RS17045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17045;old_locus_tag=LLC55_17065 NZ_CP086200.1 Protein Homology CDS 3638829 3639983 . + 0 ID=cds-WP_027703561.1;Parent=gene-LLC55_RS17045;Dbxref=Genbank:WP_027703561.1;Name=WP_027703561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347407.1;locus_tag=LLC55_RS17045;product=Cache 3/Cache 2 fusion domain-containing protein;protein_id=WP_027703561.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3640026 3640631 . + . ID=gene-LLC55_RS17050;Name=LLC55_RS17050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17050;old_locus_tag=LLC55_17070 NZ_CP086200.1 Protein Homology CDS 3640026 3640631 . + 0 ID=cds-WP_069959839.1;Parent=gene-LLC55_RS17050;Dbxref=Genbank:WP_069959839.1;Name=WP_069959839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157575.1;locus_tag=LLC55_RS17050;product=hypothetical protein;protein_id=WP_069959839.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3640827 3641750 . - . ID=gene-LLC55_RS17055;Name=LLC55_RS17055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17055;old_locus_tag=LLC55_17075;pseudo=true NZ_CP086200.1 Protein Homology CDS 3640827 3641750 . - 0 ID=cds-LLC55_RS17055;Parent=gene-LLC55_RS17055;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408458.1;locus_tag=LLC55_RS17055;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3641896 3642963 . + . ID=gene-LLC55_RS17060;Name=LLC55_RS17060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17060;old_locus_tag=LLC55_17080 NZ_CP086200.1 Protein Homology CDS 3641896 3642963 . + 0 ID=cds-WP_228329758.1;Parent=gene-LLC55_RS17060;Dbxref=Genbank:WP_228329758.1;Name=WP_228329758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300120.1;locus_tag=LLC55_RS17060;product=YeiH family protein;protein_id=WP_228329758.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3642991 3643266 . - . ID=gene-LLC55_RS17065;Name=LLC55_RS17065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17065;old_locus_tag=LLC55_17085 NZ_CP086200.1 Protein Homology CDS 3642991 3643266 . - 0 ID=cds-WP_052285790.1;Parent=gene-LLC55_RS17065;Dbxref=Genbank:WP_052285790.1;Name=WP_052285790.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF037472.2;locus_tag=LLC55_RS17065;product=Rap1a/Tai family immunity protein;protein_id=WP_052285790.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3643491 3643742 . - . ID=gene-LLC55_RS17070;Name=LLC55_RS17070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17070;old_locus_tag=LLC55_17090 NZ_CP086200.1 Protein Homology CDS 3643491 3643742 . - 0 ID=cds-WP_229001915.1;Parent=gene-LLC55_RS17070;Dbxref=Genbank:WP_229001915.1;Name=WP_229001915.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024950.2;locus_tag=LLC55_RS17070;product=SDR family oxidoreductase;protein_id=WP_229001915.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3643796 3643875 . - . ID=gene-LLC55_RS17075;Name=LLC55_RS17075;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS17075;old_locus_tag=LLC55_17095 NZ_CP086200.1 cmsearch ncRNA 3643796 3643875 . - . ID=rna-LLC55_RS17075;Parent=gene-LLC55_RS17075;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17075;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3643796 3643875 . - . ID=exon-LLC55_RS17075-1;Parent=rna-LLC55_RS17075;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17075;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3643859 3643933 . + . ID=gene-LLC55_RS17080;Name=LLC55_RS17080;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS17080;old_locus_tag=LLC55_17100 NZ_CP086200.1 cmsearch ncRNA 3643859 3643933 . + . ID=rna-LLC55_RS17080;Parent=gene-LLC55_RS17080;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17080;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3643859 3643933 . + . ID=exon-LLC55_RS17080-1;Parent=rna-LLC55_RS17080;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17080;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3643979 3644869 . - . ID=gene-LLC55_RS17085;Name=LLC55_RS17085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17085;old_locus_tag=LLC55_17105 NZ_CP086200.1 Protein Homology CDS 3643979 3644869 . - 0 ID=cds-WP_011408454.1;Parent=gene-LLC55_RS17085;Dbxref=Genbank:WP_011408454.1;Name=WP_011408454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373162.1;locus_tag=LLC55_RS17085;product=LysR family transcriptional regulator;protein_id=WP_011408454.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3644979 3646550 . + . ID=gene-LLC55_RS17090;Name=LLC55_RS17090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17090;old_locus_tag=LLC55_17110 NZ_CP086200.1 Protein Homology CDS 3644979 3646550 . + 0 ID=cds-WP_011258892.1;Parent=gene-LLC55_RS17090;Dbxref=Genbank:WP_011258892.1;Name=WP_011258892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160334.1;locus_tag=LLC55_RS17090;product=proton-conducting transporter membrane subunit;protein_id=WP_011258892.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3646573 3649011 . + . ID=gene-LLC55_RS17095;Name=LLC55_RS17095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17095;old_locus_tag=LLC55_17115 NZ_CP086200.1 Protein Homology CDS 3646573 3649011 . + 0 ID=cds-WP_011408453.1;Parent=gene-LLC55_RS17095;Dbxref=Genbank:WP_011408453.1;Name=WP_011408453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182108.1;locus_tag=LLC55_RS17095;product=DUF2309 domain-containing protein;protein_id=WP_011408453.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3649156 3650721 . - . ID=gene-LLC55_RS17100;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=LLC55_RS17100;old_locus_tag=LLC55_17120 NZ_CP086200.1 Protein Homology CDS 3649156 3650721 . - 0 ID=cds-WP_027703558.1;Parent=gene-LLC55_RS17100;Dbxref=Genbank:WP_027703558.1;Name=WP_027703558.1;Ontology_term=GO:0006177,GO:0003922,GO:0005524,GO:0016462;gbkey=CDS;gene=guaA;go_function=GMP synthase (glutamine-hydrolyzing) activity|0003922||IEA,ATP binding|0005524||IEA,pyrophosphatase activity|0016462||IEA;go_process=GMP biosynthetic process|0006177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012510808.1;locus_tag=LLC55_RS17100;product=glutamine-hydrolyzing GMP synthase;protein_id=WP_027703558.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3650848 3652305 . - . ID=gene-LLC55_RS17105;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=LLC55_RS17105;old_locus_tag=LLC55_17125 NZ_CP086200.1 Protein Homology CDS 3650848 3652305 . - 0 ID=cds-WP_011258889.1;Parent=gene-LLC55_RS17105;Dbxref=Genbank:WP_011258889.1;Name=WP_011258889.1;Ontology_term=GO:0009152,GO:0003938;gbkey=CDS;gene=guaB;go_function=IMP dehydrogenase activity|0003938||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004657166.1;locus_tag=LLC55_RS17105;product=IMP dehydrogenase;protein_id=WP_011258889.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3652494 3653405 . - . ID=gene-LLC55_RS17110;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=LLC55_RS17110;old_locus_tag=LLC55_17130 NZ_CP086200.1 Protein Homology CDS 3652494 3653405 . - 0 ID=cds-WP_011258888.1;Parent=gene-LLC55_RS17110;Dbxref=Genbank:WP_011258888.1;Name=WP_011258888.1;Ontology_term=GO:0004488;gbkey=CDS;gene=folD;go_function=methylenetetrahydrofolate dehydrogenase (NADP+) activity|0004488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157588.1;locus_tag=LLC55_RS17110;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD;protein_id=WP_011258888.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3653455 3653775 . + . ID=gene-LLC55_RS17115;Name=LLC55_RS17115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17115;old_locus_tag=LLC55_17135 NZ_CP086200.1 Protein Homology CDS 3653455 3653775 . + 0 ID=cds-WP_011258887.1;Parent=gene-LLC55_RS17115;Dbxref=Genbank:WP_011258887.1;Name=WP_011258887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258887.1;locus_tag=LLC55_RS17115;product=DUF1244 domain-containing protein;protein_id=WP_011258887.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3654068 3655443 . + . ID=gene-LLC55_RS17120;Name=LLC55_RS17120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17120;old_locus_tag=LLC55_17140;pseudo=true NZ_CP086200.1 Protein Homology CDS 3654068 3655443 . + 0 ID=cds-LLC55_RS17120;Parent=gene-LLC55_RS17120;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS17120;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3655622 3657442 . - . ID=gene-LLC55_RS17125;Name=LLC55_RS17125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17125;old_locus_tag=LLC55_17145;pseudo=true NZ_CP086200.1 Protein Homology CDS 3655622 3657442 . - 0 ID=cds-LLC55_RS17125;Parent=gene-LLC55_RS17125;Note=frameshifted;Ontology_term=GO:0006812,GO:1902600,GO:0005451,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=monovalent cation:proton antiporter activity|0005451||IEA;go_process=cation transport|0006812||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489640.1;locus_tag=LLC55_RS17125;product=monovalent cation:proton antiporter-2 (CPA2) family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3657615 3658508 . - . ID=gene-LLC55_RS17130;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=LLC55_RS17130;old_locus_tag=LLC55_17150 NZ_CP086200.1 Protein Homology CDS 3657615 3658508 . - 0 ID=cds-WP_011258884.1;Parent=gene-LLC55_RS17130;Dbxref=Genbank:WP_011258884.1;Name=WP_011258884.1;Ontology_term=GO:0009225,GO:0003983;gbkey=CDS;gene=galU;go_function=UTP:glucose-1-phosphate uridylyltransferase activity|0003983||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157591.1;locus_tag=LLC55_RS17130;product=UTP--glucose-1-phosphate uridylyltransferase GalU;protein_id=WP_011258884.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3658508 3660415 . - . ID=gene-LLC55_RS17135;Name=LLC55_RS17135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17135;old_locus_tag=LLC55_17155 NZ_CP086200.1 Protein Homology CDS 3658508 3660415 . - 0 ID=cds-WP_011258883.1;Parent=gene-LLC55_RS17135;Dbxref=Genbank:WP_011258883.1;Name=WP_011258883.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300130.1;locus_tag=LLC55_RS17135;product=nucleoside-diphosphate sugar epimerase/dehydratase;protein_id=WP_011258883.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3660429 3661397 . - . ID=gene-LLC55_RS17140;Name=LLC55_RS17140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17140;old_locus_tag=LLC55_17160 NZ_CP086200.1 Protein Homology CDS 3660429 3661397 . - 0 ID=cds-WP_011408448.1;Parent=gene-LLC55_RS17140;Dbxref=Genbank:WP_011408448.1;Name=WP_011408448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572384.1;locus_tag=LLC55_RS17140;product=glycosyltransferase family 4 protein;protein_id=WP_011408448.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3661397 3662575 . - . ID=gene-LLC55_RS17145;Name=lapB;gbkey=Gene;gene=lapB;gene_biotype=protein_coding;locus_tag=LLC55_RS17145;old_locus_tag=LLC55_17165 NZ_CP086200.1 Protein Homology CDS 3661397 3662575 . - 0 ID=cds-WP_011258881.1;Parent=gene-LLC55_RS17145;Dbxref=Genbank:WP_011258881.1;Name=WP_011258881.1;gbkey=CDS;gene=lapB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003468665.1;locus_tag=LLC55_RS17145;product=lipopolysaccharide assembly protein LapB;protein_id=WP_011258881.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3662582 3662887 . - . ID=gene-LLC55_RS17150;Name=LLC55_RS17150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17150;old_locus_tag=LLC55_17170 NZ_CP086200.1 Protein Homology CDS 3662582 3662887 . - 0 ID=cds-WP_011258880.1;Parent=gene-LLC55_RS17150;Dbxref=Genbank:WP_011258880.1;Name=WP_011258880.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451180.1;locus_tag=LLC55_RS17150;product=LapA family protein;protein_id=WP_011258880.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3662955 3663266 . - . ID=gene-LLC55_RS17155;Name=LLC55_RS17155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17155;old_locus_tag=LLC55_17175 NZ_CP086200.1 Protein Homology CDS 3662955 3663266 . - 0 ID=cds-WP_011408447.1;Parent=gene-LLC55_RS17155;Dbxref=Genbank:WP_011408447.1;Name=WP_011408447.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677,GO:0005694;gbkey=CDS;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408447.1;locus_tag=LLC55_RS17155;product=integration host factor subunit beta;protein_id=WP_011408447.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3663355 3665040 . - . ID=gene-LLC55_RS17160;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=LLC55_RS17160;old_locus_tag=LLC55_17180 NZ_CP086200.1 Protein Homology CDS 3663355 3665040 . - 0 ID=cds-WP_011258878.1;Parent=gene-LLC55_RS17160;Dbxref=Genbank:WP_011258878.1;Name=WP_011258878.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsA;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183099.1;locus_tag=LLC55_RS17160;product=30S ribosomal protein S1;protein_id=WP_011258878.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3665224 3665907 . - . ID=gene-LLC55_RS17165;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=LLC55_RS17165;old_locus_tag=LLC55_17185 NZ_CP086200.1 Protein Homology CDS 3665224 3665907 . - 0 ID=cds-WP_011258877.1;Parent=gene-LLC55_RS17165;Dbxref=Genbank:WP_011258877.1;Name=WP_011258877.1;Ontology_term=GO:0015949,GO:0004127;gbkey=CDS;gene=cmk;go_function=cytidylate kinase activity|0004127||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258877.1;locus_tag=LLC55_RS17165;product=(d)CMP kinase;protein_id=WP_011258877.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3666080 3666205 . + . ID=gene-LLC55_RS17170;Name=ykgO;gbkey=Gene;gene=ykgO;gene_biotype=protein_coding;locus_tag=LLC55_RS17170;old_locus_tag=LLC55_17190 NZ_CP086200.1 Protein Homology CDS 3666080 3666205 . + 0 ID=cds-WP_005913193.1;Parent=gene-LLC55_RS17170;Dbxref=Genbank:WP_005913193.1;Name=WP_005913193.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098120.1;locus_tag=LLC55_RS17170;product=type B 50S ribosomal protein L36;protein_id=WP_005913193.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3666472 3666813 . + . ID=gene-LLC55_RS17175;Name=LLC55_RS17175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17175;old_locus_tag=LLC55_17195 NZ_CP086200.1 Protein Homology CDS 3666472 3666813 . + 0 ID=cds-WP_011258876.1;Parent=gene-LLC55_RS17175;Dbxref=Genbank:WP_011258876.1;Name=WP_011258876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489654.1;locus_tag=LLC55_RS17175;product=hypothetical protein;protein_id=WP_011258876.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3667050 3668084 . + . ID=gene-LLC55_RS17180;Name=LLC55_RS17180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17180;old_locus_tag=LLC55_17200 NZ_CP086200.1 Protein Homology CDS 3667050 3668084 . + 0 ID=cds-WP_011408446.1;Parent=gene-LLC55_RS17180;Dbxref=Genbank:WP_011408446.1;Name=WP_011408446.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372979.1;locus_tag=LLC55_RS17180;product=agmatine deiminase family protein;protein_id=WP_011408446.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3668146 3668222 . + . ID=gene-LLC55_RS17185;Name=LLC55_RS17185;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS17185;old_locus_tag=LLC55_17205 NZ_CP086200.1 cmsearch ncRNA 3668146 3668222 . + . ID=rna-LLC55_RS17185;Parent=gene-LLC55_RS17185;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17185;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3668146 3668222 . + . ID=exon-LLC55_RS17185-1;Parent=rna-LLC55_RS17185;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17185;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3668354 3669238 . + . ID=gene-LLC55_RS17190;Name=LLC55_RS17190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17190;old_locus_tag=LLC55_17210 NZ_CP086200.1 Protein Homology CDS 3668354 3669238 . + 0 ID=cds-WP_011408445.1;Parent=gene-LLC55_RS17190;Dbxref=Genbank:WP_011408445.1;Name=WP_011408445.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451810.1;locus_tag=LLC55_RS17190;product=carbon-nitrogen hydrolase;protein_id=WP_011408445.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3669243 3669782 . + . ID=gene-LLC55_RS17195;Name=LLC55_RS17195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17195;old_locus_tag=LLC55_17215 NZ_CP086200.1 Protein Homology CDS 3669243 3669782 . + 0 ID=cds-WP_011258873.1;Parent=gene-LLC55_RS17195;Dbxref=Genbank:WP_011258873.1;Name=WP_011258873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925487.1;locus_tag=LLC55_RS17195;product=GNAT family N-acetyltransferase;protein_id=WP_011258873.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3669775 3670995 . + . ID=gene-LLC55_RS17200;Name=LLC55_RS17200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17200;old_locus_tag=LLC55_17220 NZ_CP086200.1 Protein Homology CDS 3669775 3670995 . + 0 ID=cds-WP_011408444.1;Parent=gene-LLC55_RS17200;Dbxref=Genbank:WP_011408444.1;Name=WP_011408444.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237613.1;locus_tag=LLC55_RS17200;product=TraB/GumN family protein;protein_id=WP_011408444.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3671016 3671387 . - . ID=gene-LLC55_RS17205;Name=LLC55_RS17205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17205;old_locus_tag=LLC55_17225;partial=true;pseudo=true;start_range=.,3671016 NZ_CP086200.1 Protein Homology CDS 3671016 3671387 . - 0 ID=cds-LLC55_RS17205;Parent=gene-LLC55_RS17205;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849191.1;locus_tag=LLC55_RS17205;partial=true;product=endonuclease/exonuclease/phosphatase family protein;pseudo=true;start_range=.,3671016;transl_table=11 NZ_CP086200.1 RefSeq gene 3671459 3674593 . - . ID=gene-LLC55_RS17210;Name=LLC55_RS17210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17210;old_locus_tag=LLC55_17230 NZ_CP086200.1 Protein Homology CDS 3671459 3674593 . - 0 ID=cds-WP_012445001.1;Parent=gene-LLC55_RS17210;Dbxref=Genbank:WP_012445001.1;Name=WP_012445001.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163390.1;locus_tag=LLC55_RS17210;product=discoidin domain-containing protein;protein_id=WP_012445001.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3674620 3675456 . - . ID=gene-LLC55_RS17215;Name=LLC55_RS17215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17215;old_locus_tag=LLC55_17235 NZ_CP086200.1 Protein Homology CDS 3674620 3675456 . - 0 ID=cds-WP_069959834.1;Parent=gene-LLC55_RS17215;Dbxref=Genbank:WP_069959834.1;Name=WP_069959834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017357393.1;locus_tag=LLC55_RS17215;product=carbohydrate ABC transporter permease;protein_id=WP_069959834.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3675453 3676337 . - . ID=gene-LLC55_RS17220;Name=LLC55_RS17220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17220;old_locus_tag=LLC55_17240 NZ_CP086200.1 Protein Homology CDS 3675453 3676337 . - 0 ID=cds-WP_011258869.1;Parent=gene-LLC55_RS17220;Dbxref=Genbank:WP_011258869.1;Name=WP_011258869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157814.1;locus_tag=LLC55_RS17220;product=sugar ABC transporter permease;protein_id=WP_011258869.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3676334 3677704 . - . ID=gene-LLC55_RS17225;Name=LLC55_RS17225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17225;old_locus_tag=LLC55_17245 NZ_CP086200.1 Protein Homology CDS 3676334 3677704 . - 0 ID=cds-WP_011258868.1;Parent=gene-LLC55_RS17225;Dbxref=Genbank:WP_011258868.1;Name=WP_011258868.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157813.1;locus_tag=LLC55_RS17225;product=sugar ABC transporter substrate-binding protein;protein_id=WP_011258868.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3677708 3679327 . - . ID=gene-LLC55_RS17230;Name=LLC55_RS17230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17230;old_locus_tag=LLC55_17250 NZ_CP086200.1 Protein Homology CDS 3677708 3679327 . - 0 ID=cds-WP_069959833.1;Parent=gene-LLC55_RS17230;Dbxref=Genbank:WP_069959833.1;Name=WP_069959833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258867.1;locus_tag=LLC55_RS17230;product=hypothetical protein;protein_id=WP_069959833.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3679430 3682171 . - . ID=gene-LLC55_RS17235;Name=LLC55_RS17235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17235;old_locus_tag=LLC55_17255 NZ_CP086200.1 Protein Homology CDS 3679430 3682171 . - 0 ID=cds-WP_011408439.1;Parent=gene-LLC55_RS17235;Dbxref=Genbank:WP_011408439.1;Name=WP_011408439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172742.1;locus_tag=LLC55_RS17235;product=TonB-dependent receptor;protein_id=WP_011408439.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3682294 3683316 . - . ID=gene-LLC55_RS17240;Name=LLC55_RS17240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17240;old_locus_tag=LLC55_17260 NZ_CP086200.1 Protein Homology CDS 3682294 3683316 . - 0 ID=cds-WP_011408438.1;Parent=gene-LLC55_RS17240;Dbxref=Genbank:WP_011408438.1;Name=WP_011408438.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115157.1;locus_tag=LLC55_RS17240;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_011408438.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3683885 3684205 . - . ID=gene-LLC55_RS17245;Name=LLC55_RS17245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17245;old_locus_tag=LLC55_17265 NZ_CP086200.1 Protein Homology CDS 3683885 3684205 . - 0 ID=cds-WP_011408437.1;Parent=gene-LLC55_RS17245;Dbxref=Genbank:WP_011408437.1;Name=WP_011408437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904540.1;locus_tag=LLC55_RS17245;product=BolA family transcriptional regulator;protein_id=WP_011408437.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3684202 3684501 . - . ID=gene-LLC55_RS17250;Name=LLC55_RS17250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17250;old_locus_tag=LLC55_17270 NZ_CP086200.1 Protein Homology CDS 3684202 3684501 . - 0 ID=cds-WP_011408436.1;Parent=gene-LLC55_RS17250;Dbxref=Genbank:WP_011408436.1;Name=WP_011408436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503597.1;locus_tag=LLC55_RS17250;product=YciI family protein;protein_id=WP_011408436.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3684730 3685758 . + . ID=gene-LLC55_RS17255;Name=LLC55_RS17255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17255;old_locus_tag=LLC55_17275 NZ_CP086200.1 Protein Homology CDS 3684730 3685758 . + 0 ID=cds-WP_024710371.1;Parent=gene-LLC55_RS17255;Dbxref=Genbank:WP_024710371.1;Name=WP_024710371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304898.1;locus_tag=LLC55_RS17255;product=ScpA family protein;protein_id=WP_024710371.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3685772 3686971 . + . ID=gene-LLC55_RS17260;Name=scpB;gbkey=Gene;gene=scpB;gene_biotype=protein_coding;locus_tag=LLC55_RS17260;old_locus_tag=LLC55_17280 NZ_CP086200.1 Protein Homology CDS 3685772 3686971 . + 0 ID=cds-WP_012445010.1;Parent=gene-LLC55_RS17260;Dbxref=Genbank:WP_012445010.1;Name=WP_012445010.1;Ontology_term=GO:0007059,GO:0005515;gbkey=CDS;gene=scpB;go_function=protein binding|0005515||IEA;go_process=chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382202.1;locus_tag=LLC55_RS17260;product=SMC-Scp complex subunit ScpB;protein_id=WP_012445010.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3686964 3688604 . + . ID=gene-LLC55_RS17265;Name=LLC55_RS17265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17265;old_locus_tag=LLC55_17285 NZ_CP086200.1 Protein Homology CDS 3686964 3688604 . + 0 ID=cds-WP_011408433.1;Parent=gene-LLC55_RS17265;Dbxref=Genbank:WP_011408433.1;Name=WP_011408433.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163786.1;locus_tag=LLC55_RS17265;product=pseudouridine synthase;protein_id=WP_011408433.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3688814 3689251 . - . ID=gene-LLC55_RS17270;Name=LLC55_RS17270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17270;old_locus_tag=LLC55_17290 NZ_CP086200.1 Protein Homology CDS 3688814 3689251 . - 0 ID=cds-WP_011258859.1;Parent=gene-LLC55_RS17270;Dbxref=Genbank:WP_011258859.1;Name=WP_011258859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158703.1;locus_tag=LLC55_RS17270;product=hypothetical protein;protein_id=WP_011258859.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3689367 3690185 . + . ID=gene-LLC55_RS17275;Name=LLC55_RS17275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17275;old_locus_tag=LLC55_17295 NZ_CP086200.1 Protein Homology CDS 3689367 3690185 . + 0 ID=cds-WP_011258858.1;Parent=gene-LLC55_RS17275;Dbxref=Genbank:WP_011258858.1;Name=WP_011258858.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157804.1;locus_tag=LLC55_RS17275;product=glutaminyl-peptide cyclotransferase;protein_id=WP_011258858.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3690348 3691313 . + . ID=gene-LLC55_RS17280;Name=LLC55_RS17280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17280;old_locus_tag=LLC55_17300 NZ_CP086200.1 Protein Homology CDS 3690348 3691313 . + 0 ID=cds-WP_109181928.1-4;Parent=gene-LLC55_RS17280;Dbxref=Genbank:WP_109181928.1;Name=WP_109181928.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS17280;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181928.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3691334 3692137 . - . ID=gene-LLC55_RS17285;Name=LLC55_RS17285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17285;old_locus_tag=LLC55_17305 NZ_CP086200.1 Protein Homology CDS 3691334 3692137 . - 0 ID=cds-WP_011408430.1;Parent=gene-LLC55_RS17285;Dbxref=Genbank:WP_011408430.1;Name=WP_011408430.1;Ontology_term=GO:0006807;gbkey=CDS;go_process=nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300016.1;locus_tag=LLC55_RS17285;product=amidohydrolase;protein_id=WP_011408430.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3692277 3693425 . - . ID=gene-LLC55_RS17290;Name=LLC55_RS17290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17290;old_locus_tag=LLC55_17310 NZ_CP086200.1 Protein Homology CDS 3692277 3693425 . - 0 ID=cds-WP_011408429.1;Parent=gene-LLC55_RS17290;Dbxref=Genbank:WP_011408429.1;Name=WP_011408429.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964632.1;locus_tag=LLC55_RS17290;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_011408429.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3693652 3694296 . + . ID=gene-LLC55_RS17295;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=protein_coding;locus_tag=LLC55_RS17295;old_locus_tag=LLC55_17315 NZ_CP086200.1 Protein Homology CDS 3693652 3694296 . + 0 ID=cds-WP_011408428.1;Parent=gene-LLC55_RS17295;Dbxref=Genbank:WP_011408428.1;Name=WP_011408428.1;Ontology_term=GO:0015886,GO:0015439,GO:0043190;gbkey=CDS;gene=ccmA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type heme transporter activity|0015439||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971018.1;locus_tag=LLC55_RS17295;product=heme ABC exporter ATP-binding protein CcmA;protein_id=WP_011408428.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3694293 3694988 . + . ID=gene-LLC55_RS17300;Name=ccmB;gbkey=Gene;gene=ccmB;gene_biotype=protein_coding;locus_tag=LLC55_RS17300;old_locus_tag=LLC55_17320 NZ_CP086200.1 Protein Homology CDS 3694293 3694988 . + 0 ID=cds-WP_011258853.1;Parent=gene-LLC55_RS17300;Dbxref=Genbank:WP_011258853.1;Name=WP_011258853.1;Ontology_term=GO:0015886,GO:0015232;gbkey=CDS;gene=ccmB;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808060.1;locus_tag=LLC55_RS17300;product=heme exporter protein CcmB;protein_id=WP_011258853.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3695083 3695835 . + . ID=gene-LLC55_RS17305;Name=ccmC;gbkey=Gene;gene=ccmC;gene_biotype=protein_coding;locus_tag=LLC55_RS17305;old_locus_tag=LLC55_17325 NZ_CP086200.1 Protein Homology CDS 3695083 3695835 . + 0 ID=cds-WP_011408427.1;Parent=gene-LLC55_RS17305;Dbxref=Genbank:WP_011408427.1;Name=WP_011408427.1;Ontology_term=GO:0015886,GO:0015232,GO:0016020;gbkey=CDS;gene=ccmC;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171667.1;locus_tag=LLC55_RS17305;product=heme ABC transporter permease CcmC;protein_id=WP_011408427.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3695832 3696002 . + . ID=gene-LLC55_RS17310;Name=LLC55_RS17310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17310;old_locus_tag=LLC55_17330 NZ_CP086200.1 Protein Homology CDS 3695832 3696002 . + 0 ID=cds-WP_011258852.1;Parent=gene-LLC55_RS17310;Dbxref=Genbank:WP_011258852.1;Name=WP_011258852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913150.1;locus_tag=LLC55_RS17310;product=heme exporter protein CcmD;protein_id=WP_011258852.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3695999 3696469 . + . ID=gene-LLC55_RS17315;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=LLC55_RS17315;old_locus_tag=LLC55_17335 NZ_CP086200.1 Protein Homology CDS 3695999 3696469 . + 0 ID=cds-WP_011258851.1;Parent=gene-LLC55_RS17315;Dbxref=Genbank:WP_011258851.1;Name=WP_011258851.1;gbkey=CDS;gene=ccmE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503607.1;locus_tag=LLC55_RS17315;product=cytochrome c maturation protein CcmE;protein_id=WP_011258851.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3696638 3698575 . + . ID=gene-LLC55_RS17320;Name=LLC55_RS17320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17320;old_locus_tag=LLC55_17340 NZ_CP086200.1 Protein Homology CDS 3696638 3698575 . + 0 ID=cds-WP_011408426.1;Parent=gene-LLC55_RS17320;Dbxref=Genbank:WP_011408426.1;Name=WP_011408426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171666.1;locus_tag=LLC55_RS17320;product=heme lyase CcmF/NrfE family subunit;protein_id=WP_011408426.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3698568 3699170 . + . ID=gene-LLC55_RS17325;Name=LLC55_RS17325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17325;old_locus_tag=LLC55_17345 NZ_CP086200.1 Protein Homology CDS 3698568 3699170 . + 0 ID=cds-WP_011258849.1;Parent=gene-LLC55_RS17325;Dbxref=Genbank:WP_011258849.1;Name=WP_011258849.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157799.1;locus_tag=LLC55_RS17325;product=DsbE family thiol:disulfide interchange protein;protein_id=WP_011258849.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3699167 3699598 . + . ID=gene-LLC55_RS17330;Name=LLC55_RS17330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17330;old_locus_tag=LLC55_17350 NZ_CP086200.1 Protein Homology CDS 3699167 3699598 . + 0 ID=cds-WP_011258848.1;Parent=gene-LLC55_RS17330;Dbxref=Genbank:WP_011258848.1;Name=WP_011258848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051514.1;locus_tag=LLC55_RS17330;product=cytochrome c-type biogenesis protein CcmH;protein_id=WP_011258848.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3699598 3700611 . + . ID=gene-LLC55_RS17335;Name=LLC55_RS17335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17335;old_locus_tag=LLC55_17355 NZ_CP086200.1 Protein Homology CDS 3699598 3700611 . + 0 ID=cds-WP_041182103.1;Parent=gene-LLC55_RS17335;Dbxref=Genbank:WP_041182103.1;Name=WP_041182103.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971030.1;locus_tag=LLC55_RS17335;product=tetratricopeptide repeat protein;protein_id=WP_041182103.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3700744 3700920 . - . ID=gene-LLC55_RS17340;Name=LLC55_RS17340;end_range=3700920,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17340;old_locus_tag=LLC55_17360;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3700744 3700920 . - 0 ID=cds-LLC55_RS17340;Parent=gene-LLC55_RS17340;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;end_range=3700920,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612183.1;locus_tag=LLC55_RS17340;partial=true;product=integrase core domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3700901 3702772 . - . ID=gene-LLC55_RS17345;Name=LLC55_RS17345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17345;old_locus_tag=LLC55_17365 NZ_CP086200.1 Protein Homology CDS 3700901 3702772 . - 0 ID=cds-WP_011258845.1;Parent=gene-LLC55_RS17345;Dbxref=Genbank:WP_011258845.1;Name=WP_011258845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258845.1;locus_tag=LLC55_RS17345;product=DUF4105 domain-containing protein;protein_id=WP_011258845.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3702769 3703068 . - . ID=gene-LLC55_RS17350;Name=LLC55_RS17350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17350;old_locus_tag=LLC55_17370 NZ_CP086200.1 Protein Homology CDS 3702769 3703068 . - 0 ID=cds-WP_011408424.1;Parent=gene-LLC55_RS17350;Dbxref=Genbank:WP_011408424.1;Name=WP_011408424.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408424.1;locus_tag=LLC55_RS17350;product=DUF2388 domain-containing protein;protein_id=WP_011408424.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3703103 3704521 . - . ID=gene-LLC55_RS17355;Name=LLC55_RS17355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17355;old_locus_tag=LLC55_17375 NZ_CP086200.1 Protein Homology CDS 3703103 3704521 . - 0 ID=cds-WP_011258843.1;Parent=gene-LLC55_RS17355;Dbxref=Genbank:WP_011258843.1;Name=WP_011258843.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155302.1;locus_tag=LLC55_RS17355;product=FAD-binding oxidoreductase;protein_id=WP_011258843.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3704730 3705971 . + . ID=gene-LLC55_RS17360;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=LLC55_RS17360;old_locus_tag=LLC55_17380 NZ_CP086200.1 Protein Homology CDS 3704730 3705971 . + 0 ID=cds-WP_011258842.1;Parent=gene-LLC55_RS17360;Dbxref=Genbank:WP_011258842.1;Name=WP_011258842.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=serA;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915394.1;locus_tag=LLC55_RS17360;product=phosphoglycerate dehydrogenase;protein_id=WP_011258842.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3706127 3706714 . - . ID=gene-LLC55_RS17365;Name=LLC55_RS17365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17365;old_locus_tag=LLC55_17385 NZ_CP086200.1 Protein Homology CDS 3706127 3706714 . - 0 ID=cds-WP_011258841.1;Parent=gene-LLC55_RS17365;Dbxref=Genbank:WP_011258841.1;Name=WP_011258841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367142.1;locus_tag=LLC55_RS17365;product=NUDIX hydrolase;protein_id=WP_011258841.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3706860 3708332 . + . ID=gene-LLC55_RS17370;Name=LLC55_RS17370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17370;old_locus_tag=LLC55_17390 NZ_CP086200.1 Protein Homology CDS 3706860 3708332 . + 0 ID=cds-WP_033013325.1;Parent=gene-LLC55_RS17370;Dbxref=Genbank:WP_033013325.1;Name=WP_033013325.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922595.1;locus_tag=LLC55_RS17370;product=amino acid permease;protein_id=WP_033013325.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3708409 3709839 . + . ID=gene-LLC55_RS17375;Name=LLC55_RS17375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17375;old_locus_tag=LLC55_17395 NZ_CP086200.1 Protein Homology CDS 3708409 3709839 . + 0 ID=cds-WP_069959832.1;Parent=gene-LLC55_RS17375;Dbxref=Genbank:WP_069959832.1;Name=WP_069959832.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486240.1;locus_tag=LLC55_RS17375;product=amino acid permease;protein_id=WP_069959832.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3709928 3710605 . + . ID=gene-LLC55_RS17380;Name=LLC55_RS17380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17380;old_locus_tag=LLC55_17400 NZ_CP086200.1 Protein Homology CDS 3709928 3710605 . + 0 ID=cds-WP_011408418.1;Parent=gene-LLC55_RS17380;Dbxref=Genbank:WP_011408418.1;Name=WP_011408418.1;Ontology_term=GO:0019509,GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258838.1;locus_tag=LLC55_RS17380;product=methylthioribulose 1-phosphate dehydratase;protein_id=WP_011408418.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3710617 3711183 . + . ID=gene-LLC55_RS17385;Name=LLC55_RS17385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17385;old_locus_tag=LLC55_17405 NZ_CP086200.1 Protein Homology CDS 3710617 3711183 . + 0 ID=cds-WP_011408417.1;Parent=gene-LLC55_RS17385;Dbxref=Genbank:WP_011408417.1;Name=WP_011408417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571451.1;locus_tag=LLC55_RS17385;product=acireductone dioxygenase;protein_id=WP_011408417.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3711186 3711884 . + . ID=gene-LLC55_RS17390;Name=mtnC;gbkey=Gene;gene=mtnC;gene_biotype=protein_coding;locus_tag=LLC55_RS17390;old_locus_tag=LLC55_17410 NZ_CP086200.1 Protein Homology CDS 3711186 3711884 . + 0 ID=cds-WP_011408416.1;Parent=gene-LLC55_RS17390;Dbxref=Genbank:WP_011408416.1;Name=WP_011408416.1;Ontology_term=GO:0019509,GO:0016791,GO:0016862;gbkey=CDS;gene=mtnC;go_function=phosphatase activity|0016791||IEA,intramolecular oxidoreductase activity%2C interconverting keto- and enol-groups|0016862||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303202.1;locus_tag=LLC55_RS17390;product=acireductone synthase;protein_id=WP_011408416.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3711943 3712020 . - . ID=gene-LLC55_RS17395;Name=LLC55_RS17395;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS17395;old_locus_tag=LLC55_17415 NZ_CP086200.1 cmsearch ncRNA 3711943 3712020 . - . ID=rna-LLC55_RS17395;Parent=gene-LLC55_RS17395;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17395;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3711943 3712020 . - . ID=exon-LLC55_RS17395-1;Parent=rna-LLC55_RS17395;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17395;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3712212 3713297 . + . ID=gene-LLC55_RS17400;Name=LLC55_RS17400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17400;old_locus_tag=LLC55_17420 NZ_CP086200.1 Protein Homology CDS 3712212 3713297 . + 0 ID=cds-WP_042464827.1;Parent=gene-LLC55_RS17400;Dbxref=Genbank:WP_042464827.1;Name=WP_042464827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503181.1;locus_tag=LLC55_RS17400;product=peptidase C13;protein_id=WP_042464827.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3713745 3715012 . - . ID=gene-LLC55_RS17405;Name=LLC55_RS17405;end_range=3715012,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17405;old_locus_tag=LLC55_17425;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3713745 3715012 . - 0 ID=cds-LLC55_RS17405;Parent=gene-LLC55_RS17405;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=3715012,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168443.1;locus_tag=LLC55_RS17405;partial=true;product=calcineurin-like phosphoesterase C-terminal domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3715129 3716448 . + . ID=gene-LLC55_RS17410;Name=LLC55_RS17410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17410;old_locus_tag=LLC55_17430 NZ_CP086200.1 Protein Homology CDS 3715129 3716448 . + 0 ID=cds-WP_115801889.1;Parent=gene-LLC55_RS17410;Dbxref=Genbank:WP_115801889.1;Name=WP_115801889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17410;product=IS701-like element ISXo15 family transposase;protein_id=WP_115801889.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3716737 3720864 . + . ID=gene-LLC55_RS17415;Name=LLC55_RS17415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17415;old_locus_tag=LLC55_17435 NZ_CP086200.1 Protein Homology CDS 3716737 3720864 . + 0 ID=cds-WP_069959831.1;Parent=gene-LLC55_RS17415;Dbxref=Genbank:WP_069959831.1;Name=WP_069959831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS17415;product=TAL effector protein PthXo1;protein_id=WP_069959831.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3721005 3722480 . + . ID=gene-LLC55_RS17420;Name=LLC55_RS17420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17420;old_locus_tag=LLC55_17440 NZ_CP086200.1 Protein Homology CDS 3721005 3722480 . + 0 ID=cds-WP_069959830.1;Parent=gene-LLC55_RS17420;Dbxref=Genbank:WP_069959830.1;Name=WP_069959830.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS17420;product=IS5 family transposase;protein_id=WP_069959830.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3722630 3723781 . - . ID=gene-LLC55_RS17425;Name=LLC55_RS17425;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17425;old_locus_tag=LLC55_17445;pseudo=true NZ_CP086200.1 Protein Homology CDS 3722630 3723781 . - 0 ID=cds-LLC55_RS17425;Parent=gene-LLC55_RS17425;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612052.1;locus_tag=LLC55_RS17425;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3724116 3727634 . + . ID=gene-LLC55_RS17430;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS17430;old_locus_tag=LLC55_17450 NZ_CP086200.1 Protein Homology CDS 3724116 3727634 . + 0 ID=cds-WP_069959829.1;Parent=gene-LLC55_RS17430;Dbxref=Genbank:WP_069959829.1;Name=WP_069959829.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS17430;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_069959829.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3727903 3728097 . + . ID=gene-LLC55_RS17435;Name=LLC55_RS17435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17435;old_locus_tag=LLC55_17455 NZ_CP086200.1 GeneMarkS-2+ CDS 3727903 3728097 . + 0 ID=cds-WP_042464821.1-3;Parent=gene-LLC55_RS17435;Dbxref=Genbank:WP_042464821.1;Name=WP_042464821.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS17435;product=hypothetical protein;protein_id=WP_042464821.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3728101 3728400 . + . ID=gene-LLC55_RS17440;Name=LLC55_RS17440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17440;old_locus_tag=LLC55_17460 NZ_CP086200.1 Protein Homology CDS 3728101 3728400 . + 0 ID=cds-WP_011408408.1-2;Parent=gene-LLC55_RS17440;Dbxref=Genbank:WP_011408408.1;Name=WP_011408408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450394.1;locus_tag=LLC55_RS17440;product=hypothetical protein;protein_id=WP_011408408.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3728624 3732139 . + . ID=gene-LLC55_RS17445;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS17445;old_locus_tag=LLC55_17465 NZ_CP086200.1 Protein Homology CDS 3728624 3732139 . + 0 ID=cds-WP_228329626.1;Parent=gene-LLC55_RS17445;Dbxref=Genbank:WP_228329626.1;Name=WP_228329626.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS17445;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_228329626.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3732156 3732308 . + . ID=gene-LLC55_RS17450;Name=LLC55_RS17450;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17450;old_locus_tag=LLC55_17470;partial=true;pseudo=true;start_range=.,3732156 NZ_CP086200.1 Protein Homology CDS 3732156 3732308 . + 0 ID=cds-LLC55_RS17450;Parent=gene-LLC55_RS17450;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612052.1;locus_tag=LLC55_RS17450;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,3732156;transl_table=11 NZ_CP086200.1 RefSeq gene 3732552 3732818 . + . ID=gene-LLC55_RS17455;Name=LLC55_RS17455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17455;old_locus_tag=LLC55_17475 NZ_CP086200.1 GeneMarkS-2+ CDS 3732552 3732818 . + 0 ID=cds-WP_153296780.1;Parent=gene-LLC55_RS17455;Dbxref=Genbank:WP_153296780.1;Name=WP_153296780.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS17455;product=hypothetical protein;protein_id=WP_153296780.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3733043 3733132 . - . ID=gene-LLC55_RS17460;Name=LLC55_RS17460;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS17460;old_locus_tag=LLC55_17480 NZ_CP086200.1 tRNAscan-SE tRNA 3733043 3733132 . - . ID=rna-LLC55_RS17460;Parent=gene-LLC55_RS17460;anticodon=(pos:complement(3733096..3733098));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS17460;product=tRNA-Ser NZ_CP086200.1 tRNAscan-SE exon 3733043 3733132 . - . ID=exon-LLC55_RS17460-1;Parent=rna-LLC55_RS17460;anticodon=(pos:complement(3733096..3733098));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS17460;product=tRNA-Ser NZ_CP086200.1 RefSeq gene 3733509 3734522 . - . ID=gene-LLC55_RS17465;Name=LLC55_RS17465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17465;old_locus_tag=LLC55_17485 NZ_CP086200.1 Protein Homology CDS 3733509 3734522 . - 0 ID=cds-WP_011258825.1;Parent=gene-LLC55_RS17465;Dbxref=Genbank:WP_011258825.1;Name=WP_011258825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964080.1;locus_tag=LLC55_RS17465;product=LysR family transcriptional regulator;protein_id=WP_011258825.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3734622 3735218 . + . ID=gene-LLC55_RS17470;Name=LLC55_RS17470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17470;old_locus_tag=LLC55_17490 NZ_CP086200.1 Protein Homology CDS 3734622 3735218 . + 0 ID=cds-WP_069959827.1;Parent=gene-LLC55_RS17470;Dbxref=Genbank:WP_069959827.1;Name=WP_069959827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445099.1;locus_tag=LLC55_RS17470;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_069959827.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3735270 3736238 . + . ID=gene-LLC55_RS17475;Name=LLC55_RS17475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17475;old_locus_tag=LLC55_17495 NZ_CP086200.1 Protein Homology CDS 3735270 3736238 . + 0 ID=cds-WP_011407175.1-3;Parent=gene-LLC55_RS17475;Dbxref=Genbank:WP_011407175.1;Name=WP_011407175.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS17475;product=IS5-like element ISXo1 family transposase;protein_id=WP_011407175.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3736451 3737770 . - . ID=gene-LLC55_RS17480;Name=LLC55_RS17480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17480;old_locus_tag=LLC55_17500 NZ_CP086200.1 Protein Homology CDS 3736451 3737770 . - 0 ID=cds-WP_115801888.1;Parent=gene-LLC55_RS17480;Dbxref=Genbank:WP_115801888.1;Name=WP_115801888.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17480;product=IS701-like element ISXo15 family transposase;protein_id=WP_115801888.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3738210 3739008 . + . ID=gene-LLC55_RS17485;Name=LLC55_RS17485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17485;old_locus_tag=LLC55_17505 NZ_CP086200.1 Protein Homology CDS 3738210 3738481 . + 0 ID=cds-WP_094187763.1-4;Parent=gene-LLC55_RS17485;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS17485;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3738480 3739008 . + 1 ID=cds-WP_094187763.1-4;Parent=gene-LLC55_RS17485;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS17485;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3739024 3739098 . - . ID=gene-LLC55_RS17490;Name=LLC55_RS17490;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS17490;old_locus_tag=LLC55_17510 NZ_CP086200.1 cmsearch ncRNA 3739024 3739098 . - . ID=rna-LLC55_RS17490;Parent=gene-LLC55_RS17490;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17490;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3739024 3739098 . - . ID=exon-LLC55_RS17490-1;Parent=rna-LLC55_RS17490;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17490;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3739158 3740507 . - . ID=gene-LLC55_RS17495;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=LLC55_RS17495;old_locus_tag=LLC55_17515 NZ_CP086200.1 Protein Homology CDS 3739158 3740507 . - 0 ID=cds-WP_011258822.1;Parent=gene-LLC55_RS17495;Dbxref=Genbank:WP_011258822.1;Name=WP_011258822.1;Ontology_term=GO:0006434,GO:0004828,GO:0005737;gbkey=CDS;gene=serS;go_component=cytoplasm|0005737||IEA;go_function=serine-tRNA ligase activity|0004828||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991172.1;locus_tag=LLC55_RS17495;product=serine--tRNA ligase;protein_id=WP_011258822.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3740619 3741278 . + . ID=gene-LLC55_RS17500;Name=LLC55_RS17500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17500;old_locus_tag=LLC55_17520 NZ_CP086200.1 Protein Homology CDS 3740619 3741278 . + 0 ID=cds-WP_012445101.1;Parent=gene-LLC55_RS17500;Dbxref=Genbank:WP_012445101.1;Name=WP_012445101.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089877.1;locus_tag=LLC55_RS17500;product=energy transducer TonB;protein_id=WP_012445101.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3741639 3742106 . + . ID=gene-LLC55_RS17505;Name=LLC55_RS17505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17505;old_locus_tag=LLC55_17525 NZ_CP086200.1 Protein Homology CDS 3741639 3742106 . + 0 ID=cds-WP_027704061.1;Parent=gene-LLC55_RS17505;Dbxref=Genbank:WP_027704061.1;Name=WP_027704061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158182.1;locus_tag=LLC55_RS17505;product=energy transducer TonB;protein_id=WP_027704061.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3742353 3743395 . + . ID=gene-LLC55_RS17510;Name=LLC55_RS17510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17510;old_locus_tag=LLC55_17530 NZ_CP086200.1 Protein Homology CDS 3742353 3742548 . + 0 ID=cds-WP_229001949.1;Parent=gene-LLC55_RS17510;Dbxref=Genbank:WP_229001949.1;Name=WP_229001949.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS17510;product=IS3 family transposase;protein_id=WP_229001949.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3742548 3743395 . + 2 ID=cds-WP_229001949.1;Parent=gene-LLC55_RS17510;Dbxref=Genbank:WP_229001949.1;Name=WP_229001949.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS17510;product=IS3 family transposase;protein_id=WP_229001949.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3743428 3743748 . - . ID=gene-LLC55_RS17515;Name=LLC55_RS17515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17515;old_locus_tag=LLC55_17535;partial=true;pseudo=true;start_range=.,3743428 NZ_CP086200.1 Protein Homology CDS 3743428 3743748 . - 0 ID=cds-LLC55_RS17515;Parent=gene-LLC55_RS17515;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347842.1;locus_tag=LLC55_RS17515;partial=true;product=transposase;pseudo=true;start_range=.,3743428;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3743843 3744445 . + . ID=gene-LLC55_RS17520;Name=LLC55_RS17520;end_range=3744445,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17520;old_locus_tag=LLC55_17540;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3743843 3744445 . + 0 ID=cds-LLC55_RS17520;Parent=gene-LLC55_RS17520;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3744445,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17520;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3744572 3745540 . - . ID=gene-LLC55_RS17525;Name=LLC55_RS17525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17525;old_locus_tag=LLC55_17545 NZ_CP086200.1 Protein Homology CDS 3744572 3745540 . - 0 ID=cds-WP_011257031.1-7;Parent=gene-LLC55_RS17525;Dbxref=Genbank:WP_011257031.1;Name=WP_011257031.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS17525;product=IS5-like element ISXo1 family transposase;protein_id=WP_011257031.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3745603 3745749 . + . ID=gene-LLC55_RS17530;Name=LLC55_RS17530;end_range=3745749,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17530;old_locus_tag=LLC55_17550;partial=true;pseudo=true;start_range=.,3745603 NZ_CP086200.1 Protein Homology CDS 3745603 3745749 . + 0 ID=cds-LLC55_RS17530;Parent=gene-LLC55_RS17530;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3745749,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17530;partial=true;product=transposase;pseudo=true;start_range=.,3745603;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3745745 3746483 . - . ID=gene-LLC55_RS17535;Name=LLC55_RS17535;end_range=3746483,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17535;old_locus_tag=LLC55_17555;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3745745 3746483 . - 0 ID=cds-LLC55_RS17535;Parent=gene-LLC55_RS17535;Note=programmed frameshift%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=3746483,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611838.1;locus_tag=LLC55_RS17535;partial=true;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3746572 3747537 . + . ID=gene-LLC55_RS17540;Name=LLC55_RS17540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17540;old_locus_tag=LLC55_17560 NZ_CP086200.1 Protein Homology CDS 3746572 3747537 . + 0 ID=cds-WP_109181932.1;Parent=gene-LLC55_RS17540;Dbxref=Genbank:WP_109181932.1;Name=WP_109181932.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS17540;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181932.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3747665 3748240 . + . ID=gene-LLC55_RS17545;Name=LLC55_RS17545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17545;old_locus_tag=LLC55_17565;partial=true;pseudo=true;start_range=.,3747665 NZ_CP086200.1 Protein Homology CDS 3747665 3748240 . + 0 ID=cds-LLC55_RS17545;Parent=gene-LLC55_RS17545;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17545;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,3747665;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3748341 3749054 . - . ID=gene-LLC55_RS17550;Name=LLC55_RS17550;end_range=3749054,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17550;old_locus_tag=LLC55_17570;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3748341 3749054 . - 0 ID=cds-LLC55_RS17550;Parent=gene-LLC55_RS17550;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=3749054,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS17550;partial=true;product=IS4 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3749275 3749755 . - . ID=gene-LLC55_RS17555;Name=LLC55_RS17555;end_range=3749755,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17555;old_locus_tag=LLC55_17575;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3749275 3749755 . - 0 ID=cds-LLC55_RS17555;Parent=gene-LLC55_RS17555;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=3749755,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17555;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3749767 3750732 . - . ID=gene-LLC55_RS17560;Name=LLC55_RS17560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17560;old_locus_tag=LLC55_17580 NZ_CP086200.1 Protein Homology CDS 3749767 3750732 . - 0 ID=cds-WP_109181931.1;Parent=gene-LLC55_RS17560;Dbxref=Genbank:WP_109181931.1;Name=WP_109181931.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS17560;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181931.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3750958 3751756 . + . ID=gene-LLC55_RS17565;Name=LLC55_RS17565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17565;old_locus_tag=LLC55_17585 NZ_CP086200.1 Protein Homology CDS 3750958 3751229 . + 0 ID=cds-WP_109181930.1;Parent=gene-LLC55_RS17565;Dbxref=Genbank:WP_109181930.1;Name=WP_109181930.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS17565;product=IS5 family transposase;protein_id=WP_109181930.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3751228 3751756 . + 1 ID=cds-WP_109181930.1;Parent=gene-LLC55_RS17565;Dbxref=Genbank:WP_109181930.1;Name=WP_109181930.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS17565;product=IS5 family transposase;protein_id=WP_109181930.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3751764 3751910 . - . ID=gene-LLC55_RS17570;Name=LLC55_RS17570;end_range=3751910,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17570;old_locus_tag=LLC55_17590;partial=true;pseudo=true;start_range=.,3751764 NZ_CP086200.1 Protein Homology CDS 3751764 3751910 . - 0 ID=cds-LLC55_RS17570;Parent=gene-LLC55_RS17570;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3751910,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17570;partial=true;product=transposase;pseudo=true;start_range=.,3751764;transl_table=11 NZ_CP086200.1 RefSeq gene 3752036 3753004 . - . ID=gene-LLC55_RS17575;Name=LLC55_RS17575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17575;old_locus_tag=LLC55_17595 NZ_CP086200.1 Protein Homology CDS 3752036 3753004 . - 0 ID=cds-WP_011258803.1-5;Parent=gene-LLC55_RS17575;Dbxref=Genbank:WP_011258803.1;Name=WP_011258803.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS17575;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258803.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3753154 3754473 . - . ID=gene-LLC55_RS17580;Name=LLC55_RS17580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17580;old_locus_tag=LLC55_17600 NZ_CP086200.1 Protein Homology CDS 3753154 3754473 . - 0 ID=cds-WP_011407756.1-2;Parent=gene-LLC55_RS17580;Dbxref=Genbank:WP_011407756.1;Name=WP_011407756.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17580;product=IS701 family transposase;protein_id=WP_011407756.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3754673 3755641 . - . ID=gene-LLC55_RS17585;Name=LLC55_RS17585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17585;old_locus_tag=LLC55_17605 NZ_CP086200.1 Protein Homology CDS 3754673 3755641 . - 0 ID=cds-WP_011258802.1-14;Parent=gene-LLC55_RS17585;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS17585;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3755705 3756307 . - . ID=gene-LLC55_RS17590;Name=LLC55_RS17590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17590;old_locus_tag=LLC55_17610;partial=true;pseudo=true;start_range=.,3755705 NZ_CP086200.1 Protein Homology CDS 3755705 3756307 . - 0 ID=cds-LLC55_RS17590;Parent=gene-LLC55_RS17590;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17590;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,3755705;transl_table=11 NZ_CP086200.1 RefSeq gene 3756502 3757701 . + . ID=gene-LLC55_RS17595;Name=LLC55_RS17595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17595;old_locus_tag=LLC55_17615 NZ_CP086200.1 Protein Homology CDS 3756502 3757701 . + 0 ID=cds-WP_011258800.1;Parent=gene-LLC55_RS17595;Dbxref=Genbank:WP_011258800.1;Name=WP_011258800.1;Ontology_term=GO:0009058,GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503612.1;locus_tag=LLC55_RS17595;product=homoserine O-acetyltransferase;protein_id=WP_011258800.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3757850 3758026 . + . ID=gene-LLC55_RS17600;Name=LLC55_RS17600;end_range=3758026,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17600;old_locus_tag=LLC55_17620;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3757850 3758026 . + 0 ID=cds-LLC55_RS17600;Parent=gene-LLC55_RS17600;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003676;end_range=3758026,.;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090331.1;locus_tag=LLC55_RS17600;partial=true;product=cold shock domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3758354 3759829 . + . ID=gene-LLC55_RS17605;Name=LLC55_RS17605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17605;old_locus_tag=LLC55_17625 NZ_CP086200.1 Protein Homology CDS 3758354 3759829 . + 0 ID=cds-WP_011408398.1;Parent=gene-LLC55_RS17605;Dbxref=Genbank:WP_011408398.1;Name=WP_011408398.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS17605;product=IS5-like element ISXoo5 family transposase;protein_id=WP_011408398.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3759884 3761068 . - . ID=gene-LLC55_RS17610;Name=LLC55_RS17610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17610;old_locus_tag=LLC55_17630 NZ_CP086200.1 Protein Homology CDS 3759884 3761068 . - 0 ID=cds-WP_011408397.1-3;Parent=gene-LLC55_RS17610;Dbxref=Genbank:WP_011408397.1;Name=WP_011408397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS17610;product=IS256-like element IS1113 family transposase;protein_id=WP_011408397.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3761233 3761424 . + . ID=gene-LLC55_RS17615;Name=LLC55_RS17615;end_range=3761424,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17615;old_locus_tag=LLC55_17635;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3761233 3761424 . + 0 ID=cds-LLC55_RS17615;Parent=gene-LLC55_RS17615;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3761424,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17615;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3761513 3762478 . + . ID=gene-LLC55_RS17620;Name=LLC55_RS17620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17620;old_locus_tag=LLC55_17640 NZ_CP086200.1 Protein Homology CDS 3761513 3762478 . + 0 ID=cds-WP_133265510.1;Parent=gene-LLC55_RS17620;Dbxref=Genbank:WP_133265510.1;Name=WP_133265510.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS17620;product=IS1595-like element ISXo5 family transposase;protein_id=WP_133265510.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3762485 3763618 . + . ID=gene-LLC55_RS17625;Name=LLC55_RS17625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17625;old_locus_tag=LLC55_17645;partial=true;pseudo=true;start_range=.,3762485 NZ_CP086200.1 Protein Homology CDS 3762485 3763618 . + 0 ID=cds-LLC55_RS17625;Parent=gene-LLC55_RS17625;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17625;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,3762485;transl_table=11 NZ_CP086200.1 RefSeq gene 3763831 3764799 . - . ID=gene-LLC55_RS17630;Name=LLC55_RS17630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17630;old_locus_tag=LLC55_17650 NZ_CP086200.1 Protein Homology CDS 3763831 3764799 . - 0 ID=cds-WP_011258803.1-6;Parent=gene-LLC55_RS17630;Dbxref=Genbank:WP_011258803.1;Name=WP_011258803.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS17630;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258803.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3764958 3765305 . - . ID=gene-LLC55_RS17635;Name=LLC55_RS17635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17635;old_locus_tag=LLC55_17655 NZ_CP086200.1 Protein Homology CDS 3764958 3765305 . - 0 ID=cds-WP_011408388.1;Parent=gene-LLC55_RS17635;Dbxref=Genbank:WP_011408388.1;Name=WP_011408388.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004085601.1;locus_tag=LLC55_RS17635;product=hypothetical protein;protein_id=WP_011408388.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3765307 3766074 . - . ID=gene-LLC55_RS17640;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=LLC55_RS17640;old_locus_tag=LLC55_17660 NZ_CP086200.1 Protein Homology CDS 3765307 3766074 . - 0 ID=cds-WP_011258793.1;Parent=gene-LLC55_RS17640;Dbxref=Genbank:WP_011258793.1;Name=WP_011258793.1;Ontology_term=GO:0009451,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445119.1;locus_tag=LLC55_RS17640;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_011258793.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3766407 3766782 . - . ID=gene-LLC55_RS17645;Name=LLC55_RS17645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17645;old_locus_tag=LLC55_17665;pseudo=true NZ_CP086200.1 Protein Homology CDS 3766407 3766782 . - 0 ID=cds-LLC55_RS17645;Parent=gene-LLC55_RS17645;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572181.1;locus_tag=LLC55_RS17645;product=GFA family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3766962 3767038 . - . ID=gene-LLC55_RS17650;Name=LLC55_RS17650;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS17650;old_locus_tag=LLC55_17670 NZ_CP086200.1 cmsearch ncRNA 3766962 3767038 . - . ID=rna-LLC55_RS17650;Parent=gene-LLC55_RS17650;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17650;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3766962 3767038 . - . ID=exon-LLC55_RS17650-1;Parent=rna-LLC55_RS17650;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17650;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3767145 3767943 . + . ID=gene-LLC55_RS17655;Name=LLC55_RS17655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17655;old_locus_tag=LLC55_17675 NZ_CP086200.1 Protein Homology CDS 3767145 3767416 . + 0 ID=cds-WP_109181926.1;Parent=gene-LLC55_RS17655;Dbxref=Genbank:WP_109181926.1;Name=WP_109181926.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS17655;product=IS5 family transposase;protein_id=WP_109181926.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3767415 3767943 . + 1 ID=cds-WP_109181926.1;Parent=gene-LLC55_RS17655;Dbxref=Genbank:WP_109181926.1;Name=WP_109181926.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS17655;product=IS5 family transposase;protein_id=WP_109181926.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3768154 3770682 . - . ID=gene-LLC55_RS17660;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;locus_tag=LLC55_RS17660;old_locus_tag=LLC55_17680 NZ_CP086200.1 Protein Homology CDS 3768154 3770682 . - 0 ID=cds-WP_011258790.1;Parent=gene-LLC55_RS17660;Dbxref=Genbank:WP_011258790.1;Name=WP_011258790.1;Ontology_term=GO:0006401,GO:0008997;gbkey=CDS;gene=rnr;go_function=ribonuclease R activity|0008997||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445121.1;locus_tag=LLC55_RS17660;product=ribonuclease R;protein_id=WP_011258790.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3770804 3770890 . + . ID=gene-LLC55_RS17665;Name=LLC55_RS17665;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS17665;old_locus_tag=LLC55_17685 NZ_CP086200.1 tRNAscan-SE tRNA 3770804 3770890 . + . ID=rna-LLC55_RS17665;Parent=gene-LLC55_RS17665;anticodon=(pos:3770838..3770840);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS17665;product=tRNA-Leu NZ_CP086200.1 tRNAscan-SE exon 3770804 3770890 . + . ID=exon-LLC55_RS17665-1;Parent=rna-LLC55_RS17665;anticodon=(pos:3770838..3770840);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS17665;product=tRNA-Leu NZ_CP086200.1 RefSeq gene 3771249 3772772 . - . ID=gene-LLC55_RS17670;Name=LLC55_RS17670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17670;old_locus_tag=LLC55_17690 NZ_CP086200.1 Protein Homology CDS 3771249 3772772 . - 0 ID=cds-WP_173340384.1;Parent=gene-LLC55_RS17670;Dbxref=Genbank:WP_173340384.1;Name=WP_173340384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438702.1;locus_tag=LLC55_RS17670;product=platelet-activating factor acetylhydrolase IB subunit;protein_id=WP_173340384.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3772927 3773003 . - . ID=gene-LLC55_RS17675;Name=LLC55_RS17675;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS17675;old_locus_tag=LLC55_17695 NZ_CP086200.1 cmsearch ncRNA 3772927 3773003 . - . ID=rna-LLC55_RS17675;Parent=gene-LLC55_RS17675;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17675;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3772927 3773003 . - . ID=exon-LLC55_RS17675-1;Parent=rna-LLC55_RS17675;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17675;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3773066 3773206 . - . ID=gene-LLC55_RS17680;Name=LLC55_RS17680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17680;old_locus_tag=LLC55_17700 NZ_CP086200.1 Protein Homology CDS 3773066 3773206 . - 0 ID=cds-WP_042464808.1;Parent=gene-LLC55_RS17680;Dbxref=Genbank:WP_042464808.1;Name=WP_042464808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301939.1;locus_tag=LLC55_RS17680;product=acyl-CoA dehydrogenase;protein_id=WP_042464808.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3773206 3774387 . - . ID=gene-LLC55_RS17685;Name=LLC55_RS17685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17685;old_locus_tag=LLC55_17705 NZ_CP086200.1 Protein Homology CDS 3773206 3774387 . - 0 ID=cds-WP_011408383.1;Parent=gene-LLC55_RS17685;Dbxref=Genbank:WP_011408383.1;Name=WP_011408383.1;Ontology_term=GO:0016627;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156817.1;locus_tag=LLC55_RS17685;product=acyl-CoA dehydrogenase family protein;protein_id=WP_011408383.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3774476 3775471 . + . ID=gene-LLC55_RS17690;Name=LLC55_RS17690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17690;old_locus_tag=LLC55_17710 NZ_CP086200.1 Protein Homology CDS 3774476 3775471 . + 0 ID=cds-WP_011258786.1;Parent=gene-LLC55_RS17690;Dbxref=Genbank:WP_011258786.1;Name=WP_011258786.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164067.1;locus_tag=LLC55_RS17690;product=metalloregulator ArsR/SmtB family transcription factor;protein_id=WP_011258786.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3775468 3776607 . + . ID=gene-LLC55_RS17695;Name=LLC55_RS17695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17695;old_locus_tag=LLC55_17715 NZ_CP086200.1 Protein Homology CDS 3775468 3776607 . + 0 ID=cds-WP_011408382.1;Parent=gene-LLC55_RS17695;Dbxref=Genbank:WP_011408382.1;Name=WP_011408382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380164.1;locus_tag=LLC55_RS17695;product=homocysteine S-methyltransferase family protein;protein_id=WP_011408382.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3776750 3779503 . + . ID=gene-LLC55_RS17700;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=LLC55_RS17700;old_locus_tag=LLC55_17720 NZ_CP086200.1 Protein Homology CDS 3776750 3779503 . + 0 ID=cds-WP_011408381.1;Parent=gene-LLC55_RS17700;Dbxref=Genbank:WP_011408381.1;Name=WP_011408381.1;Ontology_term=GO:0009086,GO:0008270,GO:0008705;gbkey=CDS;gene=metH;go_function=zinc ion binding|0008270||IEA,methionine synthase activity|0008705||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160303.1;locus_tag=LLC55_RS17700;product=methionine synthase;protein_id=WP_011408381.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3779890 3781095 . - . ID=gene-LLC55_RS17705;Name=LLC55_RS17705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17705;old_locus_tag=LLC55_17725 NZ_CP086200.1 Protein Homology CDS 3779890 3781095 . - 0 ID=cds-WP_011408380.1;Parent=gene-LLC55_RS17705;Dbxref=Genbank:WP_011408380.1;Name=WP_011408380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258783.1;locus_tag=LLC55_RS17705;product=AGE family epimerase/isomerase;protein_id=WP_011408380.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3781092 3782078 . - . ID=gene-LLC55_RS17710;Name=LLC55_RS17710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17710;old_locus_tag=LLC55_17730 NZ_CP086200.1 Protein Homology CDS 3781092 3782078 . - 0 ID=cds-WP_011408379.1;Parent=gene-LLC55_RS17710;Dbxref=Genbank:WP_011408379.1;Name=WP_011408379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483712.1;locus_tag=LLC55_RS17710;product=carbohydrate kinase;protein_id=WP_011408379.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3782075 3783385 . - . ID=gene-LLC55_RS17715;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=LLC55_RS17715;old_locus_tag=LLC55_17735 NZ_CP086200.1 Protein Homology CDS 3782075 3783385 . - 0 ID=cds-WP_011408378.1;Parent=gene-LLC55_RS17715;Dbxref=Genbank:WP_011408378.1;Name=WP_011408378.1;Ontology_term=GO:0015756,GO:0015535,GO:0005886;gbkey=CDS;gene=fucP;go_component=plasma membrane|0005886||IEA;go_function=fucose:proton symporter activity|0015535||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408378.1;locus_tag=LLC55_RS17715;product=L-fucose:H+ symporter permease;protein_id=WP_011408378.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3783399 3784574 . - . ID=gene-LLC55_RS17720;Name=LLC55_RS17720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17720;old_locus_tag=LLC55_17740 NZ_CP086200.1 Protein Homology CDS 3783399 3784574 . - 0 ID=cds-WP_041182423.1;Parent=gene-LLC55_RS17720;Dbxref=Genbank:WP_041182423.1;Name=WP_041182423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156810.1;locus_tag=LLC55_RS17720;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_041182423.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3784715 3785560 . - . ID=gene-LLC55_RS17725;Name=LLC55_RS17725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17725;old_locus_tag=LLC55_17745 NZ_CP086200.1 Protein Homology CDS 3784715 3785560 . - 0 ID=cds-WP_042464805.1;Parent=gene-LLC55_RS17725;Dbxref=Genbank:WP_042464805.1;Name=WP_042464805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156809.1;locus_tag=LLC55_RS17725;product=transporter;protein_id=WP_042464805.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3785894 3786646 . - . ID=gene-LLC55_RS17730;Name=LLC55_RS17730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17730;old_locus_tag=LLC55_17750 NZ_CP086200.1 Protein Homology CDS 3785894 3786646 . - 0 ID=cds-WP_042464803.1;Parent=gene-LLC55_RS17730;Dbxref=Genbank:WP_042464803.1;Name=WP_042464803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463037.1;locus_tag=LLC55_RS17730;product=DUF2058 family protein;protein_id=WP_042464803.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3786647 3786883 . - . ID=gene-LLC55_RS17735;Name=LLC55_RS17735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17735;old_locus_tag=LLC55_17755 NZ_CP086200.1 Protein Homology CDS 3786647 3786883 . - 0 ID=cds-WP_011258777.1;Parent=gene-LLC55_RS17735;Dbxref=Genbank:WP_011258777.1;Name=WP_011258777.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036690.1;locus_tag=LLC55_RS17735;product=SlyX family protein;protein_id=WP_011258777.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3786876 3788225 . - . ID=gene-LLC55_RS17740;Name=LLC55_RS17740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17740;old_locus_tag=LLC55_17760 NZ_CP086200.1 Protein Homology CDS 3786876 3788225 . - 0 ID=cds-WP_011408374.1;Parent=gene-LLC55_RS17740;Dbxref=Genbank:WP_011408374.1;Name=WP_011408374.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804407.1;locus_tag=LLC55_RS17740;product=UDP-glucose/GDP-mannose dehydrogenase family protein;protein_id=WP_011408374.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3788251 3789177 . - . ID=gene-LLC55_RS17745;Name=LLC55_RS17745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17745;old_locus_tag=LLC55_17765 NZ_CP086200.1 Protein Homology CDS 3788251 3789177 . - 0 ID=cds-WP_228329759.1;Parent=gene-LLC55_RS17745;Dbxref=Genbank:WP_228329759.1;Name=WP_228329759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380182.1;locus_tag=LLC55_RS17745;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_228329759.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3789086 3789307 . - . ID=gene-LLC55_RS17750;Name=LLC55_RS17750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17750;old_locus_tag=LLC55_17770 NZ_CP086200.1 GeneMarkS-2+ CDS 3789086 3789307 . - 0 ID=cds-WP_228329768.1;Parent=gene-LLC55_RS17750;Dbxref=Genbank:WP_228329768.1;Name=WP_228329768.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS17750;product=hypothetical protein;protein_id=WP_228329768.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3789308 3789865 . - . ID=gene-LLC55_RS17755;Name=LLC55_RS17755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17755;old_locus_tag=LLC55_17775 NZ_CP086200.1 Protein Homology CDS 3789308 3789865 . - 0 ID=cds-WP_011408372.1;Parent=gene-LLC55_RS17755;Dbxref=Genbank:WP_011408372.1;Name=WP_011408372.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963377.1;locus_tag=LLC55_RS17755;product=glutathione peroxidase;protein_id=WP_011408372.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3790001 3790249 . + . ID=gene-LLC55_RS17760;Name=LLC55_RS17760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17760;old_locus_tag=LLC55_17780 NZ_CP086200.1 Protein Homology CDS 3790001 3790249 . + 0 ID=cds-WP_042464800.1;Parent=gene-LLC55_RS17760;Dbxref=Genbank:WP_042464800.1;Name=WP_042464800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366438.1;locus_tag=LLC55_RS17760;product=hypothetical protein;protein_id=WP_042464800.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3790252 3790614 . + . ID=gene-LLC55_RS17765;Name=LLC55_RS17765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17765;old_locus_tag=LLC55_17785 NZ_CP086200.1 Protein Homology CDS 3790252 3790614 . + 0 ID=cds-WP_014502778.1;Parent=gene-LLC55_RS17765;Dbxref=Genbank:WP_014502778.1;Name=WP_014502778.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988451.1;locus_tag=LLC55_RS17765;product=GntR family transcriptional regulator;protein_id=WP_014502778.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3790611 3791486 . + . ID=gene-LLC55_RS17770;Name=LLC55_RS17770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17770;old_locus_tag=LLC55_17790 NZ_CP086200.1 Protein Homology CDS 3790611 3791486 . + 0 ID=cds-WP_011258772.1;Parent=gene-LLC55_RS17770;Dbxref=Genbank:WP_011258772.1;Name=WP_011258772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913764.1;locus_tag=LLC55_RS17770;product=ABC transporter ATP-binding protein;protein_id=WP_011258772.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3791483 3792469 . + . ID=gene-LLC55_RS17775;Name=LLC55_RS17775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17775;old_locus_tag=LLC55_17795 NZ_CP086200.1 Protein Homology CDS 3791483 3792469 . + 0 ID=cds-WP_069963848.1;Parent=gene-LLC55_RS17775;Dbxref=Genbank:WP_069963848.1;Name=WP_069963848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036684.1;locus_tag=LLC55_RS17775;product=ABC transporter permease;protein_id=WP_069963848.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3792479 3793309 . + . ID=gene-LLC55_RS17780;Name=LLC55_RS17780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17780;old_locus_tag=LLC55_17800 NZ_CP086200.1 Protein Homology CDS 3792479 3793309 . + 0 ID=cds-WP_012445134.1;Parent=gene-LLC55_RS17780;Dbxref=Genbank:WP_012445134.1;Name=WP_012445134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849098.1;locus_tag=LLC55_RS17780;product=DUF4097 family beta strand repeat-containing protein;protein_id=WP_012445134.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3793365 3793556 . + . ID=gene-LLC55_RS17785;Name=LLC55_RS17785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17785;old_locus_tag=LLC55_17805;partial=true;pseudo=true;start_range=.,3793365 NZ_CP086200.1 Protein Homology CDS 3793365 3793556 . + 0 ID=cds-LLC55_RS17785;Parent=gene-LLC55_RS17785;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578096.1;locus_tag=LLC55_RS17785;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3793365;transl_table=11 NZ_CP086200.1 RefSeq gene 3793942 3794364 . + . ID=gene-LLC55_RS17790;Name=LLC55_RS17790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17790;old_locus_tag=LLC55_17810 NZ_CP086200.1 Protein Homology CDS 3793942 3794364 . + 0 ID=cds-WP_027703710.1;Parent=gene-LLC55_RS17790;Dbxref=Genbank:WP_027703710.1;Name=WP_027703710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159043.1;locus_tag=LLC55_RS17790;product=hypothetical protein;protein_id=WP_027703710.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3794487 3795890 . - . ID=gene-LLC55_RS17795;Name=LLC55_RS17795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17795;old_locus_tag=LLC55_17815 NZ_CP086200.1 Protein Homology CDS 3794487 3795890 . - 0 ID=cds-WP_069963920.1;Parent=gene-LLC55_RS17795;Dbxref=Genbank:WP_069963920.1;Name=WP_069963920.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346974.1;locus_tag=LLC55_RS17795;product=class II fumarate hydratase;protein_id=WP_069963920.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3796013 3797029 . + . ID=gene-LLC55_RS17800;Name=LLC55_RS17800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17800;old_locus_tag=LLC55_17820;pseudo=true NZ_CP086200.1 Protein Homology CDS 3796013 3797029 . + 0 ID=cds-LLC55_RS17800;Parent=gene-LLC55_RS17800;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011229360.1;locus_tag=LLC55_RS17800;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3797342 3798105 . - . ID=gene-LLC55_RS17805;Name=LLC55_RS17805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17805;old_locus_tag=LLC55_17825 NZ_CP086200.1 Protein Homology CDS 3797790 3798105 . - 0 ID=cds-WP_094187715.1-11;Parent=gene-LLC55_RS17805;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS17805;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3797342 3797790 . - 2 ID=cds-WP_094187715.1-11;Parent=gene-LLC55_RS17805;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS17805;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3798120 3799179 . - . ID=gene-LLC55_RS17810;Name=LLC55_RS17810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17810;old_locus_tag=LLC55_17830;pseudo=true NZ_CP086200.1 Protein Homology CDS 3798120 3799179 . - 0 ID=cds-LLC55_RS17810;Parent=gene-LLC55_RS17810;Note=programmed frameshift%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408016.1;locus_tag=LLC55_RS17810;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3799235 3800075 . + . ID=gene-LLC55_RS17815;Name=LLC55_RS17815;end_range=3800075,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17815;old_locus_tag=LLC55_17835;partial=true;pseudo=true;start_range=.,3799235 NZ_CP086200.1 Protein Homology CDS 3799235 3800075 . + 0 ID=cds-LLC55_RS17815;Parent=gene-LLC55_RS17815;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3800075,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156798.1;locus_tag=LLC55_RS17815;partial=true;product=hemolysin family protein;pseudo=true;start_range=.,3799235;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3800077 3800930 . - . ID=gene-LLC55_RS17820;Name=LLC55_RS17820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17820;old_locus_tag=LLC55_17840;partial=true;pseudo=true;start_range=.,3800077 NZ_CP086200.1 Protein Homology CDS 3800077 3800930 . - 0 ID=cds-LLC55_RS17820;Parent=gene-LLC55_RS17820;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118792.1;locus_tag=LLC55_RS17820;partial=true;product=CAP domain-containing protein;pseudo=true;start_range=.,3800077;transl_table=11 NZ_CP086200.1 RefSeq gene 3801128 3802495 . + . ID=gene-LLC55_RS17825;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=LLC55_RS17825;old_locus_tag=LLC55_17845 NZ_CP086200.1 Protein Homology CDS 3801128 3802495 . + 0 ID=cds-WP_011258759.1;Parent=gene-LLC55_RS17825;Dbxref=Genbank:WP_011258759.1;Name=WP_011258759.1;Ontology_term=GO:0006188,GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=IMP biosynthetic process|0006188||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156796.1;locus_tag=LLC55_RS17825;product=adenylosuccinate lyase;protein_id=WP_011258759.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3802737 3803237 . + . ID=gene-LLC55_RS17830;Name=LLC55_RS17830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17830;old_locus_tag=LLC55_17850 NZ_CP086200.1 Protein Homology CDS 3802737 3803237 . + 0 ID=cds-WP_011258758.1;Parent=gene-LLC55_RS17830;Dbxref=Genbank:WP_011258758.1;Name=WP_011258758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346970.1;locus_tag=LLC55_RS17830;product=DUF3060 domain-containing protein;protein_id=WP_011258758.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3803425 3803500 . + . ID=gene-LLC55_RS17835;Name=LLC55_RS17835;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS17835;old_locus_tag=LLC55_17855 NZ_CP086200.1 cmsearch ncRNA 3803425 3803500 . + . ID=rna-LLC55_RS17835;Parent=gene-LLC55_RS17835;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17835;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3803425 3803500 . + . ID=exon-LLC55_RS17835-1;Parent=rna-LLC55_RS17835;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17835;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3803517 3803780 . - . ID=gene-LLC55_RS17840;Name=LLC55_RS17840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17840;old_locus_tag=LLC55_17860 NZ_CP086200.1 Protein Homology CDS 3803517 3803780 . - 0 ID=cds-WP_041182090.1;Parent=gene-LLC55_RS17840;Dbxref=Genbank:WP_041182090.1;Name=WP_041182090.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156794.1;locus_tag=LLC55_RS17840;product=PDZ domain-containing protein;protein_id=WP_041182090.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3804119 3805618 . + . ID=gene-LLC55_RS17845;Name=LLC55_RS17845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17845;old_locus_tag=LLC55_17865 NZ_CP086200.1 Protein Homology CDS 3804119 3805618 . + 0 ID=cds-WP_011408362.1;Parent=gene-LLC55_RS17845;Dbxref=Genbank:WP_011408362.1;Name=WP_011408362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118789.1;locus_tag=LLC55_RS17845;product=cupin domain-containing protein;protein_id=WP_011408362.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3805615 3806547 . + . ID=gene-LLC55_RS17850;Name=LLC55_RS17850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17850;old_locus_tag=LLC55_17870 NZ_CP086200.1 Protein Homology CDS 3805615 3806547 . + 0 ID=cds-WP_011408361.1;Parent=gene-LLC55_RS17850;Dbxref=Genbank:WP_011408361.1;Name=WP_011408361.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571998.1;locus_tag=LLC55_RS17850;product=GNAT family N-acetyltransferase;protein_id=WP_011408361.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3806728 3809556 . + . ID=gene-LLC55_RS17855;Name=LLC55_RS17855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17855;old_locus_tag=LLC55_17875 NZ_CP086200.1 Protein Homology CDS 3806728 3809556 . + 0 ID=cds-WP_011258754.1;Parent=gene-LLC55_RS17855;Dbxref=Genbank:WP_011258754.1;Name=WP_011258754.1;Ontology_term=GO:0006099,GO:0004591,GO:0030976;gbkey=CDS;go_function=oxoglutarate dehydrogenase (succinyl-transferring) activity|0004591||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507330.1;locus_tag=LLC55_RS17855;product=2-oxoglutarate dehydrogenase E1 component;protein_id=WP_011258754.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3809599 3810801 . + . ID=gene-LLC55_RS17860;Name=sucB;gbkey=Gene;gene=sucB;gene_biotype=protein_coding;locus_tag=LLC55_RS17860;old_locus_tag=LLC55_17880 NZ_CP086200.1 Protein Homology CDS 3809599 3810801 . + 0 ID=cds-WP_011258753.1;Parent=gene-LLC55_RS17860;Dbxref=Genbank:WP_011258753.1;Name=WP_011258753.1;Ontology_term=GO:0006099,GO:0006554,GO:0004149,GO:0045252;gbkey=CDS;gene=sucB;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=dihydrolipoyllysine-residue succinyltransferase activity|0004149||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,lysine catabolic process|0006554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572000.1;locus_tag=LLC55_RS17860;product=dihydrolipoyllysine-residue succinyltransferase;protein_id=WP_011258753.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3811043 3812479 . + . ID=gene-LLC55_RS17865;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=LLC55_RS17865;old_locus_tag=LLC55_17885 NZ_CP086200.1 Protein Homology CDS 3811043 3812479 . + 0 ID=cds-WP_011258752.1;Parent=gene-LLC55_RS17865;Dbxref=Genbank:WP_011258752.1;Name=WP_011258752.1;Ontology_term=GO:0006096,GO:0045454,GO:0051068,GO:0004148;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA;go_process=glycolytic process|0006096||IEA,cell redox homeostasis|0045454||IEA,dihydrolipoamide metabolic process|0051068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988423.1;locus_tag=LLC55_RS17865;product=dihydrolipoyl dehydrogenase;protein_id=WP_011258752.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3812678 3813271 . + . ID=gene-LLC55_RS17870;Name=LLC55_RS17870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17870;old_locus_tag=LLC55_17890 NZ_CP086200.1 Protein Homology CDS 3812678 3813271 . + 0 ID=cds-WP_011258751.1;Parent=gene-LLC55_RS17870;Dbxref=Genbank:WP_011258751.1;Name=WP_011258751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366391.1;locus_tag=LLC55_RS17870;product=TIGR00730 family Rossman fold protein;protein_id=WP_011258751.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3813530 3814132 . + . ID=gene-LLC55_RS17875;Name=LLC55_RS17875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17875;old_locus_tag=LLC55_17895 NZ_CP086200.1 Protein Homology CDS 3813530 3814132 . + 0 ID=cds-WP_027703751.1;Parent=gene-LLC55_RS17875;Dbxref=Genbank:WP_027703751.1;Name=WP_027703751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156787.1;locus_tag=LLC55_RS17875;product=IMPACT family protein;protein_id=WP_027703751.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3814129 3815898 . + . ID=gene-LLC55_RS17880;Name=LLC55_RS17880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17880;old_locus_tag=LLC55_17900 NZ_CP086200.1 Protein Homology CDS 3814129 3815898 . + 0 ID=cds-WP_075243526.1;Parent=gene-LLC55_RS17880;Dbxref=Genbank:WP_075243526.1;Name=WP_075243526.1;Ontology_term=GO:0055085,GO:0005524,GO:0042626,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156786.1;locus_tag=LLC55_RS17880;product=ABC transporter transmembrane domain-containing protein;protein_id=WP_075243526.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3815999 3816073 . + . ID=gene-LLC55_RS17885;Name=LLC55_RS17885;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS17885;old_locus_tag=LLC55_17905 NZ_CP086200.1 cmsearch ncRNA 3815999 3816073 . + . ID=rna-LLC55_RS17885;Parent=gene-LLC55_RS17885;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17885;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3815999 3816073 . + . ID=exon-LLC55_RS17885-1;Parent=rna-LLC55_RS17885;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS17885;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 3816140 3816788 . + . ID=gene-LLC55_RS17890;Name=LLC55_RS17890;end_range=3816788,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17890;old_locus_tag=LLC55_17910;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3816140 3816788 . + 0 ID=cds-LLC55_RS17890;Parent=gene-LLC55_RS17890;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3816788,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964693.1;locus_tag=LLC55_RS17890;partial=true;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3816786 3817898 . + . ID=gene-LLC55_RS17895;Name=LLC55_RS17895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17895;old_locus_tag=LLC55_17915;partial=true;pseudo=true;start_range=.,3816786 NZ_CP086200.1 Protein Homology CDS 3816786 3817898 . + 0 ID=cds-LLC55_RS17895;Parent=gene-LLC55_RS17895;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380228.1;locus_tag=LLC55_RS17895;partial=true;product=TolC family protein;pseudo=true;start_range=.,3816786;transl_table=11 NZ_CP086200.1 RefSeq gene 3818233 3819552 . + . ID=gene-LLC55_RS17900;Name=LLC55_RS17900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17900;old_locus_tag=LLC55_17920 NZ_CP086200.1 Protein Homology CDS 3818233 3819552 . + 0 ID=cds-WP_115801887.1;Parent=gene-LLC55_RS17900;Dbxref=Genbank:WP_115801887.1;Name=WP_115801887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS17900;product=IS701-like element ISXo15 family transposase;protein_id=WP_115801887.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3819922 3821043 . - . ID=gene-LLC55_RS17905;Name=LLC55_RS17905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17905;old_locus_tag=LLC55_17925 NZ_CP086200.1 Protein Homology CDS 3819922 3821043 . - 0 ID=cds-WP_011408356.1;Parent=gene-LLC55_RS17905;Dbxref=Genbank:WP_011408356.1;Name=WP_011408356.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502753.1;locus_tag=LLC55_RS17905;product=prephenate dehydrogenase;protein_id=WP_011408356.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3821040 3821948 . - . ID=gene-LLC55_RS17910;Name=pdxY;gbkey=Gene;gene=pdxY;gene_biotype=protein_coding;locus_tag=LLC55_RS17910;old_locus_tag=LLC55_17930 NZ_CP086200.1 Protein Homology CDS 3821040 3821948 . - 0 ID=cds-WP_011408355.1;Parent=gene-LLC55_RS17910;Dbxref=Genbank:WP_011408355.1;Name=WP_011408355.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxY;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804365.1;locus_tag=LLC55_RS17910;product=pyridoxal kinase;protein_id=WP_011408355.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3822477 3823607 . - . ID=gene-LLC55_RS17915;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=LLC55_RS17915;old_locus_tag=LLC55_17935 NZ_CP086200.1 Protein Homology CDS 3822477 3823607 . - 0 ID=cds-WP_011258743.1;Parent=gene-LLC55_RS17915;Dbxref=Genbank:WP_011258743.1;Name=WP_011258743.1;Ontology_term=GO:0006457,GO:0009408,GO:0005515;gbkey=CDS;gene=dnaJ;go_function=protein binding|0005515||IEA;go_process=protein folding|0006457||IEA,response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438731.1;locus_tag=LLC55_RS17915;product=molecular chaperone DnaJ;protein_id=WP_011258743.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3823767 3825692 . - . ID=gene-LLC55_RS17920;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=LLC55_RS17920;old_locus_tag=LLC55_17940 NZ_CP086200.1 Protein Homology CDS 3823767 3825692 . - 0 ID=cds-WP_011408354.1;Parent=gene-LLC55_RS17920;Dbxref=Genbank:WP_011408354.1;Name=WP_011408354.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380232.1;locus_tag=LLC55_RS17920;product=molecular chaperone DnaK;protein_id=WP_011408354.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3825834 3826352 . - . ID=gene-LLC55_RS17925;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=LLC55_RS17925;old_locus_tag=LLC55_17945 NZ_CP086200.1 Protein Homology CDS 3825834 3826352 . - 0 ID=cds-WP_011258741.1;Parent=gene-LLC55_RS17925;Dbxref=Genbank:WP_011258741.1;Name=WP_011258741.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483633.1;locus_tag=LLC55_RS17925;product=nucleotide exchange factor GrpE;protein_id=WP_011258741.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3826453 3827484 . - . ID=gene-LLC55_RS17930;Name=hrcA;gbkey=Gene;gene=hrcA;gene_biotype=protein_coding;locus_tag=LLC55_RS17930;old_locus_tag=LLC55_17950 NZ_CP086200.1 Protein Homology CDS 3826453 3827484 . - 0 ID=cds-WP_012445153.1;Parent=gene-LLC55_RS17930;Dbxref=Genbank:WP_012445153.1;Name=WP_012445153.1;Ontology_term=GO:0009408,GO:0005737;gbkey=CDS;gene=hrcA;go_component=cytoplasm|0005737||IEA;go_process=response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483631.1;locus_tag=LLC55_RS17930;product=heat-inducible transcriptional repressor HrcA;protein_id=WP_012445153.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3827622 3829286 . + . ID=gene-LLC55_RS17935;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=LLC55_RS17935;old_locus_tag=LLC55_17955 NZ_CP086200.1 Protein Homology CDS 3827622 3829286 . + 0 ID=cds-WP_011408352.1;Parent=gene-LLC55_RS17935;Dbxref=Genbank:WP_011408352.1;Name=WP_011408352.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445154.1;locus_tag=LLC55_RS17935;product=DNA repair protein RecN;protein_id=WP_011408352.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3829729 3830139 . - . ID=gene-LLC55_RS17940;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=LLC55_RS17940;old_locus_tag=LLC55_17960 NZ_CP086200.1 Protein Homology CDS 3829729 3830139 . - 0 ID=cds-WP_011408351.1;Parent=gene-LLC55_RS17940;Dbxref=Genbank:WP_011408351.1;Name=WP_011408351.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=fur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804358.1;locus_tag=LLC55_RS17940;product=ferric iron uptake transcriptional regulator;protein_id=WP_011408351.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3830244 3830639 . + . ID=gene-LLC55_RS17945;Name=bamE;gbkey=Gene;gene=bamE;gene_biotype=protein_coding;locus_tag=LLC55_RS17945;old_locus_tag=LLC55_17965 NZ_CP086200.1 Protein Homology CDS 3830244 3830639 . + 0 ID=cds-WP_011258737.1;Parent=gene-LLC55_RS17945;Dbxref=Genbank:WP_011258737.1;Name=WP_011258737.1;Ontology_term=GO:0019867;gbkey=CDS;gene=bamE;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449455.1;locus_tag=LLC55_RS17945;product=outer membrane protein assembly factor BamE;protein_id=WP_011258737.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3830986 3831261 . - . ID=gene-LLC55_RS17950;Name=LLC55_RS17950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17950;old_locus_tag=LLC55_17970 NZ_CP086200.1 Protein Homology CDS 3830986 3831261 . - 0 ID=cds-WP_011408349.1;Parent=gene-LLC55_RS17950;Dbxref=Genbank:WP_011408349.1;Name=WP_011408349.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258736.1;locus_tag=LLC55_RS17950;product=RnfH family protein;protein_id=WP_011408349.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3831275 3831706 . - . ID=gene-LLC55_RS17955;Name=LLC55_RS17955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17955;old_locus_tag=LLC55_17975 NZ_CP086200.1 Protein Homology CDS 3831275 3831706 . - 0 ID=cds-WP_011258735.1;Parent=gene-LLC55_RS17955;Dbxref=Genbank:WP_011258735.1;Name=WP_011258735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901567.1;locus_tag=LLC55_RS17955;product=type II toxin-antitoxin system RatA family toxin;protein_id=WP_011258735.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3831767 3832270 . + . ID=gene-LLC55_RS17960;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=LLC55_RS17960;old_locus_tag=LLC55_17980 NZ_CP086200.1 Protein Homology CDS 3831767 3832270 . + 0 ID=cds-WP_011408348.1;Parent=gene-LLC55_RS17960;Dbxref=Genbank:WP_011408348.1;Name=WP_011408348.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050971.1;locus_tag=LLC55_RS17960;product=SsrA-binding protein SmpB;protein_id=WP_011408348.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3832414 3832938 . - . ID=gene-LLC55_RS17965;Name=LLC55_RS17965;end_range=3832938,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17965;old_locus_tag=LLC55_17985;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3832414 3832938 . - 0 ID=cds-LLC55_RS17965;Parent=gene-LLC55_RS17965;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006508,GO:0008236;end_range=3832938,.;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163234.1;locus_tag=LLC55_RS17965;partial=true;product=S8 family serine peptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3832983 3833459 . + . ID=gene-LLC55_RS17970;Name=LLC55_RS17970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17970;old_locus_tag=LLC55_17990 NZ_CP086200.1 Protein Homology CDS 3832983 3833459 . + 0 ID=cds-WP_011258733.1;Parent=gene-LLC55_RS17970;Dbxref=Genbank:WP_011258733.1;Name=WP_011258733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448491.1;locus_tag=LLC55_RS17970;product=LEA type 2 family protein;protein_id=WP_011258733.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3833497 3835290 . + . ID=gene-LLC55_RS17975;Name=LLC55_RS17975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17975;old_locus_tag=LLC55_17995 NZ_CP086200.1 Protein Homology CDS 3833497 3835290 . + 0 ID=cds-WP_011258732.1;Parent=gene-LLC55_RS17975;Dbxref=Genbank:WP_011258732.1;Name=WP_011258732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258732.1;locus_tag=LLC55_RS17975;product=acyl-CoA dehydrogenase C-terminal domain-containing protein;protein_id=WP_011258732.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3835556 3836245 . + . ID=gene-LLC55_RS17980;Name=LLC55_RS17980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS17980;old_locus_tag=LLC55_18000 NZ_CP086200.1 Protein Homology CDS 3835556 3836245 . + 0 ID=cds-WP_011258731.1;Parent=gene-LLC55_RS17980;Dbxref=Genbank:WP_011258731.1;Name=WP_011258731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408346.1;locus_tag=LLC55_RS17980;product=HNH endonuclease;protein_id=WP_011258731.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3836643 3838559 . + . ID=gene-LLC55_RS17985;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=LLC55_RS17985;old_locus_tag=LLC55_18005 NZ_CP086200.1 Protein Homology CDS 3836643 3838559 . + 0 ID=cds-WP_011258730.1;Parent=gene-LLC55_RS17985;Dbxref=Genbank:WP_011258730.1;Name=WP_011258730.1;Ontology_term=GO:0008615,GO:0009228,GO:0009240,GO:0008661,GO:0005737;gbkey=CDS;gene=dxs;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate synthase activity|0008661||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA,thiamine biosynthetic process|0009228||IEA,isopentenyl diphosphate biosynthetic process|0009240||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037575.1;locus_tag=LLC55_RS17985;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_011258730.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3838596 3839841 . - . ID=gene-LLC55_RS17990;Name=LLC55_RS17990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17990;old_locus_tag=LLC55_18010;pseudo=true NZ_CP086200.1 Protein Homology CDS 3838596 3839841 . - 0 ID=cds-LLC55_RS17990;Parent=gene-LLC55_RS17990;Note=frameshifted%3B internal stop;Ontology_term=GO:0016758;gbkey=CDS;go_function=hexosyltransferase activity|0016758||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848791.1;locus_tag=LLC55_RS17990;product=glycosyltransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3839831 3840097 . - . ID=gene-LLC55_RS17995;Name=LLC55_RS17995;end_range=3840097,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS17995;old_locus_tag=LLC55_18015;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3839831 3840097 . - 0 ID=cds-LLC55_RS17995;Parent=gene-LLC55_RS17995;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=3840097,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363506.1;locus_tag=LLC55_RS17995;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3840151 3841116 . + . ID=gene-LLC55_RS18000;Name=LLC55_RS18000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18000;old_locus_tag=LLC55_18020;pseudo=true NZ_CP086200.1 Protein Homology CDS 3840151 3841116 . + 0 ID=cds-LLC55_RS18000;Parent=gene-LLC55_RS18000;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011229360.1;locus_tag=LLC55_RS18000;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3841195 3842160 . + . ID=gene-LLC55_RS18005;Name=LLC55_RS18005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18005;old_locus_tag=LLC55_18025;pseudo=true NZ_CP086200.1 Protein Homology CDS 3841195 3842160 . + 0 ID=cds-LLC55_RS18005;Parent=gene-LLC55_RS18005;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS18005;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3842243 3843250 . + . ID=gene-LLC55_RS18010;Name=LLC55_RS18010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18010;old_locus_tag=LLC55_18030;partial=true;pseudo=true;start_range=.,3842243 NZ_CP086200.1 Protein Homology CDS 3842243 3843250 . + 0 ID=cds-LLC55_RS18010;Parent=gene-LLC55_RS18010;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612183.1;locus_tag=LLC55_RS18010;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,3842243;transl_table=11 NZ_CP086200.1 RefSeq gene 3843606 3843854 . - . ID=gene-LLC55_RS18015;Name=LLC55_RS18015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18015;old_locus_tag=LLC55_18035 NZ_CP086200.1 Protein Homology CDS 3843606 3843854 . - 0 ID=cds-WP_011258724.1;Parent=gene-LLC55_RS18015;Dbxref=Genbank:WP_011258724.1;Name=WP_011258724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155755.1;locus_tag=LLC55_RS18015;product=hypothetical protein;protein_id=WP_011258724.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3844049 3844813 . + . ID=gene-LLC55_RS18020;Name=LLC55_RS18020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18020;old_locus_tag=LLC55_18040;pseudo=true NZ_CP086200.1 Protein Homology CDS 3844049 3844813 . + 0 ID=cds-LLC55_RS18020;Parent=gene-LLC55_RS18020;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=LLC55_RS18020;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3844810 3845544 . - . ID=gene-LLC55_RS18025;Name=LLC55_RS18025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18025;old_locus_tag=LLC55_18045 NZ_CP086200.1 Protein Homology CDS 3844810 3845544 . - 0 ID=cds-WP_011258723.1;Parent=gene-LLC55_RS18025;Dbxref=Genbank:WP_011258723.1;Name=WP_011258723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258723.1;locus_tag=LLC55_RS18025;product=serine hydrolase domain-containing protein;protein_id=WP_011258723.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3845595 3847175 . - . ID=gene-LLC55_RS18030;Name=LLC55_RS18030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18030;old_locus_tag=LLC55_18050 NZ_CP086200.1 Protein Homology CDS 3845595 3847175 . - 0 ID=cds-WP_011258722.1;Parent=gene-LLC55_RS18030;Dbxref=Genbank:WP_011258722.1;Name=WP_011258722.1;Ontology_term=GO:0006855,GO:0009410,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=xenobiotic transmembrane transport|0006855||IEA,response to xenobiotic stimulus|0009410||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919973.1;locus_tag=LLC55_RS18030;product=DHA2 family efflux MFS transporter permease subunit;protein_id=WP_011258722.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3847182 3848375 . - . ID=gene-LLC55_RS18035;Name=LLC55_RS18035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18035;old_locus_tag=LLC55_18055 NZ_CP086200.1 Protein Homology CDS 3847182 3848375 . - 0 ID=cds-WP_011408343.1;Parent=gene-LLC55_RS18035;Dbxref=Genbank:WP_011408343.1;Name=WP_011408343.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168701.1;locus_tag=LLC55_RS18035;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_011408343.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3848386 3849858 . - . ID=gene-LLC55_RS18040;Name=LLC55_RS18040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18040;old_locus_tag=LLC55_18060 NZ_CP086200.1 Protein Homology CDS 3848386 3849858 . - 0 ID=cds-WP_173340396.1;Parent=gene-LLC55_RS18040;Dbxref=Genbank:WP_173340396.1;Name=WP_173340396.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117698.1;locus_tag=LLC55_RS18040;product=AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor;protein_id=WP_173340396.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3849900 3850340 . - . ID=gene-LLC55_RS18045;Name=LLC55_RS18045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18045;old_locus_tag=LLC55_18065 NZ_CP086200.1 Protein Homology CDS 3849900 3850340 . - 0 ID=cds-WP_011408341.1;Parent=gene-LLC55_RS18045;Dbxref=Genbank:WP_011408341.1;Name=WP_011408341.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089765.1;locus_tag=LLC55_RS18045;product=MarR family transcriptional regulator;protein_id=WP_011408341.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3850462 3851309 . + . ID=gene-LLC55_RS18050;Name=LLC55_RS18050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18050;old_locus_tag=LLC55_18070;pseudo=true NZ_CP086200.1 Protein Homology CDS 3850462 3851309 . + 0 ID=cds-LLC55_RS18050;Parent=gene-LLC55_RS18050;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463002.1;locus_tag=LLC55_RS18050;product=helix-turn-helix transcriptional regulator;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3851370 3853613 . + . ID=gene-LLC55_RS18055;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=LLC55_RS18055;old_locus_tag=LLC55_18075 NZ_CP086200.1 Protein Homology CDS 3851370 3853613 . + 0 ID=cds-WP_011408339.1;Parent=gene-LLC55_RS18055;Dbxref=Genbank:WP_011408339.1;Name=WP_011408339.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parC;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483492.1;locus_tag=LLC55_RS18055;product=DNA topoisomerase IV subunit A;protein_id=WP_011408339.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3854069 3854554 . - . ID=gene-LLC55_RS18060;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=LLC55_RS18060;old_locus_tag=LLC55_18080 NZ_CP086200.1 Protein Homology CDS 3854069 3854554 . - 0 ID=cds-WP_011408338.1;Parent=gene-LLC55_RS18060;Dbxref=Genbank:WP_011408338.1;Name=WP_011408338.1;Ontology_term=GO:0006880,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular sequestering of iron ion|0006880||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911751.1;locus_tag=LLC55_RS18060;product=bacterioferritin;protein_id=WP_011408338.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3854701 3857118 . + . ID=gene-LLC55_RS18065;Name=LLC55_RS18065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18065;old_locus_tag=LLC55_18085 NZ_CP086200.1 Protein Homology CDS 3854701 3857118 . + 0 ID=cds-WP_012445169.1;Parent=gene-LLC55_RS18065;Dbxref=Genbank:WP_012445169.1;Name=WP_012445169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300242.1;locus_tag=LLC55_RS18065;product=penicillin acylase family protein;protein_id=WP_012445169.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3857681 3859807 . + . ID=gene-LLC55_RS18070;Name=LLC55_RS18070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18070;old_locus_tag=LLC55_18090 NZ_CP086200.1 Protein Homology CDS 3857681 3859807 . + 0 ID=cds-WP_011258714.1;Parent=gene-LLC55_RS18070;Dbxref=Genbank:WP_011258714.1;Name=WP_011258714.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore-iron transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925026.1;locus_tag=LLC55_RS18070;product=TonB-dependent siderophore receptor;protein_id=WP_011258714.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3860159 3861290 . + . ID=gene-LLC55_RS18075;Name=LLC55_RS18075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18075;old_locus_tag=LLC55_18095;pseudo=true NZ_CP086200.1 Protein Homology CDS 3860159 3861290 . + 0 ID=cds-LLC55_RS18075;Parent=gene-LLC55_RS18075;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155705.1;locus_tag=LLC55_RS18075;product=right-handed parallel beta-helix repeat-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3861359 3863053 . - . ID=gene-LLC55_RS18080;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=LLC55_RS18080;old_locus_tag=LLC55_18100 NZ_CP086200.1 Protein Homology CDS 3861359 3863053 . - 0 ID=cds-WP_011258712.1;Parent=gene-LLC55_RS18080;Dbxref=Genbank:WP_011258712.1;Name=WP_011258712.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988264.1;locus_tag=LLC55_RS18080;product=asparagine synthase B;protein_id=WP_011258712.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3863348 3864478 . - . ID=gene-LLC55_RS18085;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=LLC55_RS18085;old_locus_tag=LLC55_18105 NZ_CP086200.1 Protein Homology CDS 3863348 3864478 . - 0 ID=cds-WP_011408336.1;Parent=gene-LLC55_RS18085;Dbxref=Genbank:WP_011408336.1;Name=WP_011408336.1;Ontology_term=GO:0009089,GO:0009014;gbkey=CDS;gene=dapE;go_function=succinyl-diaminopimelate desuccinylase activity|0009014||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346903.1;locus_tag=LLC55_RS18085;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_011408336.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3864483 3864983 . - . ID=gene-LLC55_RS18090;Name=LLC55_RS18090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18090;old_locus_tag=LLC55_18110 NZ_CP086200.1 Protein Homology CDS 3864483 3864983 . - 0 ID=cds-WP_011408335.1;Parent=gene-LLC55_RS18090;Dbxref=Genbank:WP_011408335.1;Name=WP_011408335.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301347.1;locus_tag=LLC55_RS18090;product=GNAT family N-acetyltransferase;protein_id=WP_011408335.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3864980 3865336 . - . ID=gene-LLC55_RS18095;Name=LLC55_RS18095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18095;old_locus_tag=LLC55_18115 NZ_CP086200.1 Protein Homology CDS 3864980 3865336 . - 0 ID=cds-WP_011408334.1;Parent=gene-LLC55_RS18095;Dbxref=Genbank:WP_011408334.1;Name=WP_011408334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115327.1;locus_tag=LLC55_RS18095;product=Spx/MgsR family RNA polymerase-binding regulatory protein;protein_id=WP_011408334.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3865396 3865716 . - . ID=gene-LLC55_RS18100;Name=LLC55_RS18100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18100;old_locus_tag=LLC55_18120 NZ_CP086200.1 Protein Homology CDS 3865396 3865716 . - 0 ID=cds-WP_011408333.1;Parent=gene-LLC55_RS18100;Dbxref=Genbank:WP_011408333.1;Name=WP_011408333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408333.1;locus_tag=LLC55_RS18100;product=hypothetical protein;protein_id=WP_011408333.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3865799 3866995 . - . ID=gene-LLC55_RS18105;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=LLC55_RS18105;old_locus_tag=LLC55_18125 NZ_CP086200.1 Protein Homology CDS 3865799 3866995 . - 0 ID=cds-WP_012445174.1;Parent=gene-LLC55_RS18105;Dbxref=Genbank:WP_012445174.1;Name=WP_012445174.1;Ontology_term=GO:0009089,GO:0008666;gbkey=CDS;gene=dapD;go_function=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase activity|0008666||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576699.1;locus_tag=LLC55_RS18105;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_012445174.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3867012 3869621 . - . ID=gene-LLC55_RS18110;Name=LLC55_RS18110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18110;old_locus_tag=LLC55_18130 NZ_CP086200.1 Protein Homology CDS 3867012 3869621 . - 0 ID=cds-WP_011408332.1;Parent=gene-LLC55_RS18110;Dbxref=Genbank:WP_011408332.1;Name=WP_011408332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576698.1;locus_tag=LLC55_RS18110;product=[protein-PII] uridylyltransferase;protein_id=WP_011408332.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3869618 3870394 . - . ID=gene-LLC55_RS18115;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=LLC55_RS18115;old_locus_tag=LLC55_18135 NZ_CP086200.1 Protein Homology CDS 3869618 3870394 . - 0 ID=cds-WP_011258707.1;Parent=gene-LLC55_RS18115;Dbxref=Genbank:WP_011258707.1;Name=WP_011258707.1;Ontology_term=GO:0036211;gbkey=CDS;gene=map;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366184.1;locus_tag=LLC55_RS18115;product=type I methionyl aminopeptidase;protein_id=WP_011258707.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3870687 3871238 . + . ID=gene-LLC55_RS18120;Name=LLC55_RS18120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18120;old_locus_tag=LLC55_18140 NZ_CP086200.1 Protein Homology CDS 3870687 3871238 . + 0 ID=cds-WP_099051284.1;Parent=gene-LLC55_RS18120;Dbxref=Genbank:WP_099051284.1;Name=WP_099051284.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576696.1;locus_tag=LLC55_RS18120;product=spore coat U domain-containing protein;protein_id=WP_099051284.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3871247 3872017 . + . ID=gene-LLC55_RS18125;Name=LLC55_RS18125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18125;old_locus_tag=LLC55_18145 NZ_CP086200.1 Protein Homology CDS 3871247 3872017 . + 0 ID=cds-WP_011408330.1;Parent=gene-LLC55_RS18125;Dbxref=Genbank:WP_011408330.1;Name=WP_011408330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089755.1;locus_tag=LLC55_RS18125;product=molecular chaperone;protein_id=WP_011408330.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3872034 3874385 . + . ID=gene-LLC55_RS18130;Name=LLC55_RS18130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18130;old_locus_tag=LLC55_18150 NZ_CP086200.1 Protein Homology CDS 3872034 3874385 . + 0 ID=cds-WP_011258704.1;Parent=gene-LLC55_RS18130;Dbxref=Genbank:WP_011258704.1;Name=WP_011258704.1;Ontology_term=GO:0009297,GO:0015473,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169461.1;locus_tag=LLC55_RS18130;product=fimbria/pilus outer membrane usher protein;protein_id=WP_011258704.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3874382 3875416 . + . ID=gene-LLC55_RS18135;Name=LLC55_RS18135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18135;old_locus_tag=LLC55_18155 NZ_CP086200.1 Protein Homology CDS 3874382 3875416 . + 0 ID=cds-WP_011258703.1;Parent=gene-LLC55_RS18135;Dbxref=Genbank:WP_011258703.1;Name=WP_011258703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155696.1;locus_tag=LLC55_RS18135;product=spore coat U domain-containing protein;protein_id=WP_011258703.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3875463 3875795 . + . ID=gene-LLC55_RS18140;Name=LLC55_RS18140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18140;old_locus_tag=LLC55_18160 NZ_CP086200.1 Protein Homology CDS 3875463 3875795 . + 0 ID=cds-WP_041182086.1;Parent=gene-LLC55_RS18140;Dbxref=Genbank:WP_041182086.1;Name=WP_041182086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849735.1;locus_tag=LLC55_RS18140;product=hypothetical protein;protein_id=WP_041182086.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3875798 3876523 . + . ID=gene-LLC55_RS18145;Name=LLC55_RS18145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18145;old_locus_tag=LLC55_18165 NZ_CP086200.1 Protein Homology CDS 3875798 3876523 . + 0 ID=cds-WP_011408326.1;Parent=gene-LLC55_RS18145;Dbxref=Genbank:WP_011408326.1;Name=WP_011408326.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921629.1;locus_tag=LLC55_RS18145;product=fimbria/pilus periplasmic chaperone;protein_id=WP_011408326.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3876899 3877702 . + . ID=gene-LLC55_RS18150;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=LLC55_RS18150;old_locus_tag=LLC55_18170 NZ_CP086200.1 Protein Homology CDS 3876899 3877702 . + 0 ID=cds-WP_011258701.1;Parent=gene-LLC55_RS18150;Dbxref=Genbank:WP_011258701.1;Name=WP_011258701.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsB;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258701.1;locus_tag=LLC55_RS18150;product=30S ribosomal protein S2;protein_id=WP_011258701.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3877872 3878750 . + . ID=gene-LLC55_RS18155;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=LLC55_RS18155;old_locus_tag=LLC55_18175 NZ_CP086200.1 Protein Homology CDS 3877872 3878750 . + 0 ID=cds-WP_011258700.1;Parent=gene-LLC55_RS18155;Dbxref=Genbank:WP_011258700.1;Name=WP_011258700.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962895.1;locus_tag=LLC55_RS18155;product=translation elongation factor Ts;protein_id=WP_011258700.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3879013 3879198 . + . ID=gene-LLC55_RS18160;Name=LLC55_RS18160;end_range=3879198,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18160;old_locus_tag=LLC55_18180;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3879013 3879198 . + 0 ID=cds-LLC55_RS18160;Parent=gene-LLC55_RS18160;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3879198,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366167.1;locus_tag=LLC55_RS18160;partial=true;product=HDOD domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3879312 3880034 . + . ID=gene-LLC55_RS18165;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=LLC55_RS18165;old_locus_tag=LLC55_18185 NZ_CP086200.1 Protein Homology CDS 3879312 3880034 . + 0 ID=cds-WP_011258698.1;Parent=gene-LLC55_RS18165;Dbxref=Genbank:WP_011258698.1;Name=WP_011258698.1;Ontology_term=GO:0015949,GO:0033862;gbkey=CDS;gene=pyrH;go_function=UMP kinase activity|0033862||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366166.1;locus_tag=LLC55_RS18165;product=UMP kinase;protein_id=WP_011258698.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3880215 3880772 . + . ID=gene-LLC55_RS18170;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=LLC55_RS18170;old_locus_tag=LLC55_18190 NZ_CP086200.1 Protein Homology CDS 3880215 3880772 . + 0 ID=cds-WP_011258697.1;Parent=gene-LLC55_RS18170;Dbxref=Genbank:WP_011258697.1;Name=WP_011258697.1;Ontology_term=GO:0006412,GO:0008135,GO:0005737;gbkey=CDS;gene=frr;go_component=cytoplasm|0005737||IEA;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036562.1;locus_tag=LLC55_RS18170;product=ribosome recycling factor;protein_id=WP_011258697.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3880790 3881551 . + . ID=gene-LLC55_RS18175;Name=uppS;gbkey=Gene;gene=uppS;gene_biotype=protein_coding;locus_tag=LLC55_RS18175;old_locus_tag=LLC55_18195 NZ_CP086200.1 Protein Homology CDS 3880790 3881551 . + 0 ID=cds-WP_027703358.1;Parent=gene-LLC55_RS18175;Dbxref=Genbank:WP_027703358.1;Name=WP_027703358.1;Ontology_term=GO:0009252,GO:0005737;gbkey=CDS;gene=uppS;go_component=cytoplasm|0005737||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346894.1;locus_tag=LLC55_RS18175;product=polyprenyl diphosphate synthase;protein_id=WP_027703358.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3881548 3882375 . + . ID=gene-LLC55_RS18180;Name=LLC55_RS18180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18180;old_locus_tag=LLC55_18200 NZ_CP086200.1 Protein Homology CDS 3881548 3882375 . + 0 ID=cds-WP_011258695.1;Parent=gene-LLC55_RS18180;Dbxref=Genbank:WP_011258695.1;Name=WP_011258695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258695.1;locus_tag=LLC55_RS18180;product=phosphatidate cytidylyltransferase;protein_id=WP_011258695.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3882378 3883568 . + . ID=gene-LLC55_RS18185;Name=LLC55_RS18185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18185;old_locus_tag=LLC55_18205 NZ_CP086200.1 Protein Homology CDS 3882378 3883568 . + 0 ID=cds-WP_011258694.1;Parent=gene-LLC55_RS18185;Dbxref=Genbank:WP_011258694.1;Name=WP_011258694.1;Ontology_term=GO:0008299,GO:0005515,GO:0030604,GO:0046872,GO:0070402;gbkey=CDS;go_function=protein binding|0005515||IEA,1-deoxy-D-xylulose-5-phosphate reductoisomerase activity|0030604||IEA,metal ion binding|0046872||IEA,NADPH binding|0070402||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485371.1;locus_tag=LLC55_RS18185;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=WP_011258694.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3883595 3884941 . + . ID=gene-LLC55_RS18190;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=LLC55_RS18190;old_locus_tag=LLC55_18210 NZ_CP086200.1 Protein Homology CDS 3883595 3884941 . + 0 ID=cds-WP_011408324.1;Parent=gene-LLC55_RS18190;Dbxref=Genbank:WP_011408324.1;Name=WP_011408324.1;Ontology_term=GO:0006508,GO:0004222,GO:0016020;gbkey=CDS;gene=rseP;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304858.1;locus_tag=LLC55_RS18190;product=RIP metalloprotease RseP;protein_id=WP_011408324.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3885025 3887391 . + . ID=gene-LLC55_RS18195;Name=bamA;gbkey=Gene;gene=bamA;gene_biotype=protein_coding;locus_tag=LLC55_RS18195;old_locus_tag=LLC55_18215 NZ_CP086200.1 Protein Homology CDS 3885025 3887391 . + 0 ID=cds-WP_012445188.1;Parent=gene-LLC55_RS18195;Dbxref=Genbank:WP_012445188.1;Name=WP_012445188.1;Ontology_term=GO:0009279;gbkey=CDS;gene=bamA;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117511.1;locus_tag=LLC55_RS18195;product=outer membrane protein assembly factor BamA;protein_id=WP_012445188.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3887469 3887663 . - . ID=gene-LLC55_RS18200;Name=LLC55_RS18200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18200;old_locus_tag=LLC55_18220;pseudo=true NZ_CP086200.1 Protein Homology CDS 3887469 3887663 . - 0 ID=cds-LLC55_RS18200;Parent=gene-LLC55_RS18200;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159402.1;locus_tag=LLC55_RS18200;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3887791 3888804 . + . ID=gene-LLC55_RS18205;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=LLC55_RS18205;old_locus_tag=LLC55_18225 NZ_CP086200.1 Protein Homology CDS 3887791 3888804 . + 0 ID=cds-WP_069959820.1;Parent=gene-LLC55_RS18205;Dbxref=Genbank:WP_069959820.1;Name=WP_069959820.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;gene=lpxD;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965614.1;locus_tag=LLC55_RS18205;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_069959820.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3888801 3889262 . + . ID=gene-LLC55_RS18210;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=LLC55_RS18210;old_locus_tag=LLC55_18230 NZ_CP086200.1 Protein Homology CDS 3888801 3889262 . + 0 ID=cds-WP_011258690.1;Parent=gene-LLC55_RS18210;Dbxref=Genbank:WP_011258690.1;Name=WP_011258690.1;Ontology_term=GO:0006633,GO:0016836;gbkey=CDS;gene=fabZ;go_function=hydro-lyase activity|0016836||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036554.1;locus_tag=LLC55_RS18210;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_011258690.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3889286 3890077 . + . ID=gene-LLC55_RS18215;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=LLC55_RS18215;old_locus_tag=LLC55_18235 NZ_CP086200.1 Protein Homology CDS 3889286 3890077 . + 0 ID=cds-WP_011258689.1;Parent=gene-LLC55_RS18215;Dbxref=Genbank:WP_011258689.1;Name=WP_011258689.1;Ontology_term=GO:0008610,GO:0008780;gbkey=CDS;gene=lpxA;go_function=acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|0008780||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507232.1;locus_tag=LLC55_RS18215;product=acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_011258689.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3890074 3891372 . + . ID=gene-LLC55_RS18220;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=LLC55_RS18220;old_locus_tag=LLC55_18240 NZ_CP086200.1 Protein Homology CDS 3890074 3891372 . + 0 ID=cds-WP_011258688.1;Parent=gene-LLC55_RS18220;Dbxref=Genbank:WP_011258688.1;Name=WP_011258688.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;gene=lpxB;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258688.1;locus_tag=LLC55_RS18220;product=lipid-A-disaccharide synthase;protein_id=WP_011258688.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3891369 3892109 . + . ID=gene-LLC55_RS18225;Name=LLC55_RS18225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18225;old_locus_tag=LLC55_18245 NZ_CP086200.1 Protein Homology CDS 3891369 3892109 . + 0 ID=cds-WP_011408322.1;Parent=gene-LLC55_RS18225;Dbxref=Genbank:WP_011408322.1;Name=WP_011408322.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408322.1;locus_tag=LLC55_RS18225;product=ribonuclease HII;protein_id=WP_011408322.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3892567 3896157 . + . ID=gene-LLC55_RS18230;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=LLC55_RS18230;old_locus_tag=LLC55_18250 NZ_CP086200.1 Protein Homology CDS 3892567 3896157 . + 0 ID=cds-WP_011408321.1;Parent=gene-LLC55_RS18230;Dbxref=Genbank:WP_011408321.1;Name=WP_011408321.1;Ontology_term=GO:0006260,GO:0003676,GO:0008408;gbkey=CDS;gene=dnaE;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902404.1;locus_tag=LLC55_RS18230;product=DNA polymerase III subunit alpha;protein_id=WP_011408321.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3896333 3897292 . + . ID=gene-LLC55_RS18235;Name=LLC55_RS18235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18235;old_locus_tag=LLC55_18255 NZ_CP086200.1 Protein Homology CDS 3896333 3897292 . + 0 ID=cds-WP_011258685.1;Parent=gene-LLC55_RS18235;Dbxref=Genbank:WP_011258685.1;Name=WP_011258685.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258685.1;locus_tag=LLC55_RS18235;product=acetyl-CoA carboxylase carboxyltransferase subunit alpha;protein_id=WP_011258685.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3897403 3897853 . - . ID=gene-LLC55_RS18240;Name=LLC55_RS18240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18240;old_locus_tag=LLC55_18260;partial=true;pseudo=true;start_range=.,3897403 NZ_CP086200.1 Protein Homology CDS 3897403 3897853 . - 0 ID=cds-LLC55_RS18240;Parent=gene-LLC55_RS18240;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS18240;partial=true;product=transposase;pseudo=true;start_range=.,3897403;transl_table=11 NZ_CP086200.1 RefSeq gene 3898162 3900312 . + . ID=gene-LLC55_RS18245;Name=LLC55_RS18245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18245;old_locus_tag=LLC55_18265 NZ_CP086200.1 Protein Homology CDS 3898162 3900312 . + 0 ID=cds-WP_228329628.1;Parent=gene-LLC55_RS18245;Dbxref=Genbank:WP_228329628.1;Name=WP_228329628.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445192.1;locus_tag=LLC55_RS18245;product=TonB-dependent receptor;protein_id=WP_228329628.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3900312 3901049 . + . ID=gene-LLC55_RS18250;Name=LLC55_RS18250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18250;old_locus_tag=LLC55_18270 NZ_CP086200.1 Protein Homology CDS 3900312 3901049 . + 0 ID=cds-WP_011258682.1;Parent=gene-LLC55_RS18250;Dbxref=Genbank:WP_011258682.1;Name=WP_011258682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258682.1;locus_tag=LLC55_RS18250;product=ABC transporter ATP-binding protein;protein_id=WP_011258682.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3901046 3902458 . + . ID=gene-LLC55_RS18255;Name=LLC55_RS18255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18255;old_locus_tag=LLC55_18275 NZ_CP086200.1 Protein Homology CDS 3901046 3902458 . + 0 ID=cds-WP_044756910.1;Parent=gene-LLC55_RS18255;Dbxref=Genbank:WP_044756910.1;Name=WP_044756910.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258681.1;locus_tag=LLC55_RS18255;product=DUF3526 domain-containing protein;protein_id=WP_044756910.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3902521 3903228 . + . ID=gene-LLC55_RS18260;Name=LLC55_RS18260;end_range=3903228,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18260;old_locus_tag=LLC55_18280;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3902521 3903228 . + 0 ID=cds-LLC55_RS18260;Parent=gene-LLC55_RS18260;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3903228,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024091.2;locus_tag=LLC55_RS18260;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3903295 3904209 . + . ID=gene-LLC55_RS18265;Name=LLC55_RS18265;end_range=3904209,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18265;old_locus_tag=LLC55_18285;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3903295 3904209 . + 0 ID=cds-LLC55_RS18265;Parent=gene-LLC55_RS18265;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3904209,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408129.1;locus_tag=LLC55_RS18265;partial=true;product=DUF3526 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3904596 3904826 . + . ID=gene-LLC55_RS18270;Name=LLC55_RS18270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18270;old_locus_tag=LLC55_18290 NZ_CP086200.1 GeneMarkS-2+ CDS 3904596 3904826 . + 0 ID=cds-WP_075244058.1;Parent=gene-LLC55_RS18270;Dbxref=Genbank:WP_075244058.1;Name=WP_075244058.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS18270;product=hypothetical protein;protein_id=WP_075244058.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3904904 3905350 . - . ID=gene-LLC55_RS18275;Name=LLC55_RS18275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18275;old_locus_tag=LLC55_18295 NZ_CP086200.1 Protein Homology CDS 3904904 3905350 . - 0 ID=cds-WP_011408317.1;Parent=gene-LLC55_RS18275;Dbxref=Genbank:WP_011408317.1;Name=WP_011408317.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902407.1;locus_tag=LLC55_RS18275;product=CopD family protein;protein_id=WP_011408317.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3905424 3906026 . + . ID=gene-LLC55_RS18280;Name=LLC55_RS18280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18280;old_locus_tag=LLC55_18300 NZ_CP086200.1 Protein Homology CDS 3905424 3906026 . + 0 ID=cds-WP_011408316.1;Parent=gene-LLC55_RS18280;Dbxref=Genbank:WP_011408316.1;Name=WP_011408316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258678.1;locus_tag=LLC55_RS18280;product=class I SAM-dependent methyltransferase;protein_id=WP_011408316.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3906167 3907510 . + . ID=gene-LLC55_RS18285;Name=LLC55_RS18285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18285;old_locus_tag=LLC55_18305 NZ_CP086200.1 Protein Homology CDS 3906167 3907510 . + 0 ID=cds-WP_012445197.1;Parent=gene-LLC55_RS18285;Dbxref=Genbank:WP_012445197.1;Name=WP_012445197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472356.1;locus_tag=LLC55_RS18285;product=polyhydroxyalkanoate depolymerase;protein_id=WP_012445197.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3907578 3907654 . + . ID=gene-LLC55_RS18290;Name=LLC55_RS18290;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS18290;old_locus_tag=LLC55_18310 NZ_CP086200.1 cmsearch ncRNA 3907578 3907654 . + . ID=rna-LLC55_RS18290;Parent=gene-LLC55_RS18290;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18290;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3907578 3907654 . + . ID=exon-LLC55_RS18290-1;Parent=rna-LLC55_RS18290;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18290;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 3907977 3908453 . + . ID=gene-LLC55_RS18295;Name=LLC55_RS18295;end_range=3908453,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18295;old_locus_tag=LLC55_18315;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3907977 3908453 . + 0 ID=cds-LLC55_RS18295;Parent=gene-LLC55_RS18295;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3908453,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904273.1;locus_tag=LLC55_RS18295;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3908565 3909005 . + . ID=gene-LLC55_RS18300;Name=LLC55_RS18300;end_range=3909005,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18300;old_locus_tag=LLC55_18320;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 3908565 3909005 . + 0 ID=cds-LLC55_RS18300;Parent=gene-LLC55_RS18300;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3909005,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS18300;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3909012 3909978 . - . ID=gene-LLC55_RS18305;Name=LLC55_RS18305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18305;old_locus_tag=LLC55_18325;pseudo=true NZ_CP086200.1 Protein Homology CDS 3909012 3909978 . - 0 ID=cds-LLC55_RS18305;Parent=gene-LLC55_RS18305;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS18305;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3910067 3911113 . + . ID=gene-LLC55_RS18310;Name=LLC55_RS18310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18310;old_locus_tag=LLC55_18330;partial=true;pseudo=true;start_range=.,3910067 NZ_CP086200.1 Protein Homology CDS 3910067 3911113 . + 0 ID=cds-LLC55_RS18310;Parent=gene-LLC55_RS18310;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS18310;partial=true;product=IS5-like element ISXoo5 family transposase;pseudo=true;start_range=.,3910067;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3911126 3911365 . + . ID=gene-LLC55_RS18315;Name=LLC55_RS18315;end_range=3911365,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18315;old_locus_tag=LLC55_18335;partial=true;pseudo=true;start_range=.,3911126 NZ_CP086200.1 Protein Homology CDS 3911126 3911365 . + 0 ID=cds-LLC55_RS18315;Parent=gene-LLC55_RS18315;Note=in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa%3B catalyzes formation of activated sulfate intermediate%3B converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate%3B the activated intermediate is transferred to the nodulation factors by NodH%3B may interact with NodP and NodQ%3B similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3911365,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477182.1;locus_tag=LLC55_RS18315;partial=true;product=adenylyl-sulfate kinase;pseudo=true;start_range=.,3911126;transl_table=11 NZ_CP086200.1 RefSeq gene 3911356 3911517 . - . ID=gene-LLC55_RS18320;Name=LLC55_RS18320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18320;old_locus_tag=LLC55_18340 NZ_CP086200.1 GeneMarkS-2+ CDS 3911356 3911517 . - 0 ID=cds-WP_228329769.1;Parent=gene-LLC55_RS18320;Dbxref=Genbank:WP_228329769.1;Name=WP_228329769.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS18320;product=hypothetical protein;protein_id=WP_228329769.1;transl_table=11 NZ_CP086200.1 cmsearch riboswitch 3911735 3911910 . + . ID=id-NZ_CP086200.1:3911735..3911910;Dbxref=RFAM:RF00050;Note=FMN riboswitch;bound_moiety=flavin mononucleotide;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP086200.1 RefSeq gene 3912078 3912680 . + . ID=gene-LLC55_RS18325;Name=LLC55_RS18325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18325;old_locus_tag=LLC55_18345 NZ_CP086200.1 Protein Homology CDS 3912078 3912680 . + 0 ID=cds-WP_011260257.1;Parent=gene-LLC55_RS18325;Dbxref=Genbank:WP_011260257.1;Name=WP_011260257.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576782.1;locus_tag=LLC55_RS18325;product=riboflavin synthase;protein_id=WP_011260257.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3912677 3913816 . + . ID=gene-LLC55_RS18330;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=LLC55_RS18330;old_locus_tag=LLC55_18350 NZ_CP086200.1 Protein Homology CDS 3912677 3913816 . + 0 ID=cds-WP_011260256.1;Parent=gene-LLC55_RS18330;Dbxref=Genbank:WP_011260256.1;Name=WP_011260256.1;Ontology_term=GO:0008686;gbkey=CDS;gene=ribB;go_function=3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity|0008686||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444173.1;locus_tag=LLC55_RS18330;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=WP_011260256.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3914130 3914594 . + . ID=gene-LLC55_RS18335;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=LLC55_RS18335;old_locus_tag=LLC55_18355 NZ_CP086200.1 Protein Homology CDS 3914130 3914594 . + 0 ID=cds-WP_011409394.1;Parent=gene-LLC55_RS18335;Dbxref=Genbank:WP_011409394.1;Name=WP_011409394.1;Ontology_term=GO:0000906,GO:0009349;gbkey=CDS;gene=ribH;go_component=riboflavin synthase complex|0009349||IEA;go_function=6%2C7-dimethyl-8-ribityllumazine synthase activity|0000906||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409394.1;locus_tag=LLC55_RS18335;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_011409394.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3914591 3915061 . + . ID=gene-LLC55_RS18340;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=LLC55_RS18340;old_locus_tag=LLC55_18360 NZ_CP086200.1 Protein Homology CDS 3914591 3915061 . + 0 ID=cds-WP_011260254.1;Parent=gene-LLC55_RS18340;Dbxref=Genbank:WP_011260254.1;Name=WP_011260254.1;Ontology_term=GO:0006355;gbkey=CDS;gene=nusB;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968663.1;locus_tag=LLC55_RS18340;product=transcription antitermination factor NusB;protein_id=WP_011260254.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3915282 3916256 . + . ID=gene-LLC55_RS18345;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=LLC55_RS18345;old_locus_tag=LLC55_18365 NZ_CP086200.1 Protein Homology CDS 3915282 3916256 . + 0 ID=cds-WP_011409393.1;Parent=gene-LLC55_RS18345;Dbxref=Genbank:WP_011409393.1;Name=WP_011409393.1;Ontology_term=GO:0009228,GO:0009030;gbkey=CDS;gene=thiL;go_function=thiamine-phosphate kinase activity|0009030||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925283.1;locus_tag=LLC55_RS18345;product=thiamine-phosphate kinase;protein_id=WP_011409393.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3916555 3917579 . + . ID=gene-LLC55_RS18350;Name=LLC55_RS18350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18350;old_locus_tag=LLC55_18370;pseudo=true NZ_CP086200.1 Protein Homology CDS 3916555 3917579 . + 0 ID=cds-LLC55_RS18350;Parent=gene-LLC55_RS18350;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501973.1;locus_tag=LLC55_RS18350;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3917863 3918903 . + . ID=gene-LLC55_RS18355;Name=LLC55_RS18355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18355;old_locus_tag=LLC55_18375;partial=true;pseudo=true;start_range=.,3917863 NZ_CP086200.1 Protein Homology CDS 3917863 3918903 . + 0 ID=cds-LLC55_RS18355;Parent=gene-LLC55_RS18355;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501974.1;locus_tag=LLC55_RS18355;partial=true;product=F-box domain-containing protein;pseudo=true;start_range=.,3917863;transl_table=11 NZ_CP086200.1 RefSeq gene 3919353 3919445 . + . ID=gene-LLC55_RS18360;Name=LLC55_RS18360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18360;old_locus_tag=LLC55_18380 NZ_CP086200.1 Protein Homology CDS 3919353 3919445 . + 0 ID=cds-WP_006452907.1;Parent=gene-LLC55_RS18360;Dbxref=Genbank:WP_006452907.1;Name=WP_006452907.1;Ontology_term=GO:0043462,GO:0008556,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=regulation of ATP-dependent activity|0043462||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452907.1;locus_tag=LLC55_RS18360;product=potassium-transporting ATPase subunit F;protein_id=WP_006452907.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3919461 3921254 . + . ID=gene-LLC55_RS18365;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=protein_coding;locus_tag=LLC55_RS18365;old_locus_tag=LLC55_18385 NZ_CP086200.1 Protein Homology CDS 3919461 3921254 . + 0 ID=cds-WP_069963895.1;Parent=gene-LLC55_RS18365;Dbxref=Genbank:WP_069963895.1;Name=WP_069963895.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpA;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490514.1;locus_tag=LLC55_RS18365;product=potassium-transporting ATPase subunit KdpA;protein_id=WP_069963895.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3921267 3923315 . + . ID=gene-LLC55_RS18370;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=LLC55_RS18370;old_locus_tag=LLC55_18390 NZ_CP086200.1 Protein Homology CDS 3921267 3923315 . + 0 ID=cds-WP_011260249.1;Parent=gene-LLC55_RS18370;Dbxref=Genbank:WP_011260249.1;Name=WP_011260249.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpB;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260249.1;locus_tag=LLC55_RS18370;product=potassium-transporting ATPase subunit KdpB;protein_id=WP_011260249.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3923356 3923985 . + . ID=gene-LLC55_RS18375;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=protein_coding;locus_tag=LLC55_RS18375;old_locus_tag=LLC55_18395 NZ_CP086200.1 Protein Homology CDS 3923356 3923985 . + 0 ID=cds-WP_011409390.1;Parent=gene-LLC55_RS18375;Dbxref=Genbank:WP_011409390.1;Name=WP_011409390.1;Ontology_term=GO:0006813,GO:0008556,GO:0016020;gbkey=CDS;gene=kdpC;go_component=membrane|0016020||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490511.1;locus_tag=LLC55_RS18375;product=potassium-transporting ATPase subunit KdpC;protein_id=WP_011409390.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3924037 3926697 . + . ID=gene-LLC55_RS18380;Name=LLC55_RS18380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18380;old_locus_tag=LLC55_18400 NZ_CP086200.1 Protein Homology CDS 3924037 3926697 . + 0 ID=cds-WP_011260247.1;Parent=gene-LLC55_RS18380;Dbxref=Genbank:WP_011260247.1;Name=WP_011260247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849531.1;locus_tag=LLC55_RS18380;product=sensor histidine kinase KdpD;protein_id=WP_011260247.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3926687 3927403 . + . ID=gene-LLC55_RS18385;Name=LLC55_RS18385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18385;old_locus_tag=LLC55_18405 NZ_CP086200.1 Protein Homology CDS 3926687 3927403 . + 0 ID=cds-WP_011409389.1;Parent=gene-LLC55_RS18385;Dbxref=Genbank:WP_011409389.1;Name=WP_011409389.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158836.1;locus_tag=LLC55_RS18385;product=response regulator;protein_id=WP_011409389.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3927417 3928802 . - . ID=gene-LLC55_RS18390;Name=LLC55_RS18390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18390;old_locus_tag=LLC55_18410 NZ_CP086200.1 Protein Homology CDS 3927417 3928802 . - 0 ID=cds-WP_011409388.1;Parent=gene-LLC55_RS18390;Dbxref=Genbank:WP_011409388.1;Name=WP_011409388.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115489.1;locus_tag=LLC55_RS18390;product=FAD-binding protein;protein_id=WP_011409388.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3928799 3929338 . - . ID=gene-LLC55_RS18395;Name=LLC55_RS18395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18395;old_locus_tag=LLC55_18415 NZ_CP086200.1 Protein Homology CDS 3928799 3929338 . - 0 ID=cds-WP_011409387.1;Parent=gene-LLC55_RS18395;Dbxref=Genbank:WP_011409387.1;Name=WP_011409387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005910944.1;locus_tag=LLC55_RS18395;product=metal-dependent hydrolase;protein_id=WP_011409387.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3929368 3929736 . - . ID=gene-LLC55_RS18400;Name=LLC55_RS18400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18400;old_locus_tag=LLC55_18420 NZ_CP086200.1 Protein Homology CDS 3929368 3929736 . - 0 ID=cds-WP_011409386.1;Parent=gene-LLC55_RS18400;Dbxref=Genbank:WP_011409386.1;Name=WP_011409386.1;Ontology_term=GO:0003676,GO:0004518;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571510.1;locus_tag=LLC55_RS18400;product=YraN family protein;protein_id=WP_011409386.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3929741 3931432 . - . ID=gene-LLC55_RS18405;Name=LLC55_RS18405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18405;old_locus_tag=LLC55_18425 NZ_CP086200.1 Protein Homology CDS 3929741 3931432 . - 0 ID=cds-WP_027703224.1;Parent=gene-LLC55_RS18405;Dbxref=Genbank:WP_027703224.1;Name=WP_027703224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160278.1;locus_tag=LLC55_RS18405;product=penicillin-binding protein activator;protein_id=WP_027703224.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3931553 3932374 . + . ID=gene-LLC55_RS18410;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=LLC55_RS18410;old_locus_tag=LLC55_18430 NZ_CP086200.1 Protein Homology CDS 3931553 3932374 . + 0 ID=cds-WP_011409385.1;Parent=gene-LLC55_RS18410;Dbxref=Genbank:WP_011409385.1;Name=WP_011409385.1;Ontology_term=GO:0000451,GO:0008649,GO:0008757;gbkey=CDS;gene=rsmI;go_function=rRNA methyltransferase activity|0008649||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=rRNA 2'-O-methylation|0000451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035951.1;locus_tag=LLC55_RS18410;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_011409385.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3932521 3932870 . + . ID=gene-LLC55_RS18415;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=LLC55_RS18415;old_locus_tag=LLC55_18435 NZ_CP086200.1 cmsearch RNase_P_RNA 3932521 3932870 . + . ID=rna-LLC55_RS18415;Parent=gene-LLC55_RS18415;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18415;product=RNase P RNA component class A NZ_CP086200.1 cmsearch exon 3932521 3932870 . + . ID=exon-LLC55_RS18415-1;Parent=rna-LLC55_RS18415;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18415;product=RNase P RNA component class A NZ_CP086200.1 RefSeq pseudogene 3932987 3933202 . - . ID=gene-LLC55_RS18420;Name=LLC55_RS18420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18420;old_locus_tag=LLC55_18440;partial=true;pseudo=true;start_range=.,3932987 NZ_CP086200.1 Protein Homology CDS 3932987 3933202 . - 0 ID=cds-LLC55_RS18420;Parent=gene-LLC55_RS18420;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988736.1;locus_tag=LLC55_RS18420;partial=true;product=type II toxin-antitoxin system CcdA family antitoxin;pseudo=true;start_range=.,3932987;transl_table=11 NZ_CP086200.1 RefSeq gene 3933251 3934018 . - . ID=gene-LLC55_RS18425;Name=LLC55_RS18425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18425;old_locus_tag=LLC55_18445 NZ_CP086200.1 Protein Homology CDS 3933251 3934018 . - 0 ID=cds-WP_075242170.1;Parent=gene-LLC55_RS18425;Dbxref=Genbank:WP_075242170.1;Name=WP_075242170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485298.1;locus_tag=LLC55_RS18425;product=NRDE family protein;protein_id=WP_075242170.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3934333 3934788 . + . ID=gene-LLC55_RS18430;Name=mraZ;gbkey=Gene;gene=mraZ;gene_biotype=protein_coding;locus_tag=LLC55_RS18430;old_locus_tag=LLC55_18450 NZ_CP086200.1 Protein Homology CDS 3934333 3934788 . + 0 ID=cds-WP_011260238.1;Parent=gene-LLC55_RS18430;Dbxref=Genbank:WP_011260238.1;Name=WP_011260238.1;Ontology_term=GO:0051302,GO:0043565;gbkey=CDS;gene=mraZ;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of cell division|0051302||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367651.1;locus_tag=LLC55_RS18430;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=WP_011260238.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3934804 3935847 . + . ID=gene-LLC55_RS18435;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=LLC55_RS18435;old_locus_tag=LLC55_18455 NZ_CP086200.1 Protein Homology CDS 3934804 3935847 . + 0 ID=cds-WP_011409381.1;Parent=gene-LLC55_RS18435;Dbxref=Genbank:WP_011409381.1;Name=WP_011409381.1;Ontology_term=GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299913.1;locus_tag=LLC55_RS18435;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=WP_011409381.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3935844 3936107 . + . ID=gene-LLC55_RS18440;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;locus_tag=LLC55_RS18440;old_locus_tag=LLC55_18460 NZ_CP086200.1 Protein Homology CDS 3935844 3936107 . + 0 ID=cds-WP_011409380.1;Parent=gene-LLC55_RS18440;Dbxref=Genbank:WP_011409380.1;Name=WP_011409380.1;Ontology_term=GO:0000910,GO:0016020;gbkey=CDS;gene=ftsL;go_component=membrane|0016020||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010344441.1;locus_tag=LLC55_RS18440;product=cell division protein FtsL;protein_id=WP_011409380.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3936247 3938115 . + . ID=gene-LLC55_RS18445;Name=LLC55_RS18445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18445;old_locus_tag=LLC55_18465 NZ_CP086200.1 Protein Homology CDS 3936247 3938115 . + 0 ID=cds-WP_011409379.1;Parent=gene-LLC55_RS18445;Dbxref=Genbank:WP_011409379.1;Name=WP_011409379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381784.1;locus_tag=LLC55_RS18445;product=penicillin-binding protein 2;protein_id=WP_011409379.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3938124 3939599 . + . ID=gene-LLC55_RS18450;Name=LLC55_RS18450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18450;old_locus_tag=LLC55_18470 NZ_CP086200.1 Protein Homology CDS 3938124 3939599 . + 0 ID=cds-WP_080493528.1;Parent=gene-LLC55_RS18450;Dbxref=Genbank:WP_080493528.1;Name=WP_080493528.1;Ontology_term=GO:0008360,GO:0009058,GO:0051301,GO:0005524,GO:0016881;gbkey=CDS;go_function=ATP binding|0005524||IEA,acid-amino acid ligase activity|0016881||IEA;go_process=regulation of cell shape|0008360||IEA,biosynthetic process|0009058||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346420.1;locus_tag=LLC55_RS18450;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=WP_080493528.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3939596 3941107 . + . ID=gene-LLC55_RS18455;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=LLC55_RS18455;old_locus_tag=LLC55_18475 NZ_CP086200.1 Protein Homology CDS 3939596 3941107 . + 0 ID=cds-WP_011409378.1;Parent=gene-LLC55_RS18455;Dbxref=Genbank:WP_011409378.1;Name=WP_011409378.1;Ontology_term=GO:0009252,GO:0047480;gbkey=CDS;gene=murF;go_function=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485287.1;locus_tag=LLC55_RS18455;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_011409378.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3941097 3942182 . + . ID=gene-LLC55_RS18460;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=LLC55_RS18460;old_locus_tag=LLC55_18480 NZ_CP086200.1 Protein Homology CDS 3941097 3942182 . + 0 ID=cds-WP_011260232.1;Parent=gene-LLC55_RS18460;Dbxref=Genbank:WP_011260232.1;Name=WP_011260232.1;Ontology_term=GO:0009252,GO:0008963;gbkey=CDS;gene=mraY;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452808.1;locus_tag=LLC55_RS18460;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_011260232.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3942182 3943555 . + . ID=gene-LLC55_RS18465;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=LLC55_RS18465;old_locus_tag=LLC55_18485 NZ_CP086200.1 Protein Homology CDS 3942182 3943555 . + 0 ID=cds-WP_011409377.1;Parent=gene-LLC55_RS18465;Dbxref=Genbank:WP_011409377.1;Name=WP_011409377.1;Ontology_term=GO:0009252,GO:0051301,GO:0003674,GO:0016020;gbkey=CDS;gene=ftsW;go_component=membrane|0016020||IEA;go_function=molecular_function|0003674||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155392.1;locus_tag=LLC55_RS18465;product=putative lipid II flippase FtsW;protein_id=WP_011409377.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3943552 3944877 . + . ID=gene-LLC55_RS18470;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=LLC55_RS18470;old_locus_tag=LLC55_18490 NZ_CP086200.1 Protein Homology CDS 3943552 3944877 . + 0 ID=cds-WP_011260230.1;Parent=gene-LLC55_RS18470;Dbxref=Genbank:WP_011260230.1;Name=WP_011260230.1;Ontology_term=GO:0009252,GO:0050511;gbkey=CDS;gene=murG;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260230.1;locus_tag=LLC55_RS18470;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=WP_011260230.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3944874 3946307 . + . ID=gene-LLC55_RS18475;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=LLC55_RS18475;old_locus_tag=LLC55_18495 NZ_CP086200.1 Protein Homology CDS 3944874 3946307 . + 0 ID=cds-WP_011409375.1;Parent=gene-LLC55_RS18475;Dbxref=Genbank:WP_011409375.1;Name=WP_011409375.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165008.1;locus_tag=LLC55_RS18475;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_011409375.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3946304 3947260 . + . ID=gene-LLC55_RS18480;Name=LLC55_RS18480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18480;old_locus_tag=LLC55_18500 NZ_CP086200.1 Protein Homology CDS 3946304 3947260 . + 0 ID=cds-WP_012444189.1;Parent=gene-LLC55_RS18480;Dbxref=Genbank:WP_012444189.1;Name=WP_012444189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485275.1;locus_tag=LLC55_RS18480;product=D-alanine--D-alanine ligase;protein_id=WP_012444189.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3947385 3948206 . + . ID=gene-LLC55_RS18485;Name=LLC55_RS18485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18485;old_locus_tag=LLC55_18505 NZ_CP086200.1 Protein Homology CDS 3947385 3948206 . + 0 ID=cds-WP_069959993.1;Parent=gene-LLC55_RS18485;Dbxref=Genbank:WP_069959993.1;Name=WP_069959993.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501996.1;locus_tag=LLC55_RS18485;product=cell division protein FtsQ/DivIB;protein_id=WP_069959993.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3948210 3949445 . + . ID=gene-LLC55_RS18490;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=LLC55_RS18490;old_locus_tag=LLC55_18510 NZ_CP086200.1 Protein Homology CDS 3948210 3949445 . + 0 ID=cds-WP_012444190.1;Parent=gene-LLC55_RS18490;Dbxref=Genbank:WP_012444190.1;Name=WP_012444190.1;Ontology_term=GO:0043093,GO:0005515,GO:0005524;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019398559.1;locus_tag=LLC55_RS18490;product=cell division protein FtsA;protein_id=WP_012444190.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3949748 3950992 . + . ID=gene-LLC55_RS18495;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=LLC55_RS18495;old_locus_tag=LLC55_18515 NZ_CP086200.1 Protein Homology CDS 3949748 3950992 . + 0 ID=cds-WP_011260226.1;Parent=gene-LLC55_RS18495;Dbxref=Genbank:WP_011260226.1;Name=WP_011260226.1;Ontology_term=GO:0000910,GO:0003924;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017170527.1;locus_tag=LLC55_RS18495;product=cell division protein FtsZ;protein_id=WP_011260226.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3951234 3952145 . + . ID=gene-LLC55_RS18500;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=LLC55_RS18500;old_locus_tag=LLC55_18520 NZ_CP086200.1 Protein Homology CDS 3951234 3952145 . + 0 ID=cds-WP_011260225.1;Parent=gene-LLC55_RS18500;Dbxref=Genbank:WP_011260225.1;Name=WP_011260225.1;Ontology_term=GO:0009245,GO:0008759;gbkey=CDS;gene=lpxC;go_function=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|0008759||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237961.1;locus_tag=LLC55_RS18500;product=UDP-3-O-acyl-N-acetylglucosamine deacetylase;protein_id=WP_011260225.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3952332 3952778 . - . ID=gene-LLC55_RS18505;Name=LLC55_RS18505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18505;old_locus_tag=LLC55_18525 NZ_CP086200.1 Protein Homology CDS 3952332 3952778 . - 0 ID=cds-WP_069959992.1;Parent=gene-LLC55_RS18505;Dbxref=Genbank:WP_069959992.1;Name=WP_069959992.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571812.1;locus_tag=LLC55_RS18505;product=DUF721 domain-containing protein;protein_id=WP_069959992.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3952779 3953720 . + . ID=gene-LLC55_RS18510;Name=LLC55_RS18510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18510;old_locus_tag=LLC55_18530 NZ_CP086200.1 Protein Homology CDS 3952779 3953720 . + 0 ID=cds-WP_011409372.1;Parent=gene-LLC55_RS18510;Dbxref=Genbank:WP_011409372.1;Name=WP_011409372.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158828.1;locus_tag=LLC55_RS18510;product=M23 family metallopeptidase;protein_id=WP_011409372.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3953877 3956615 . + . ID=gene-LLC55_RS18515;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=LLC55_RS18515;old_locus_tag=LLC55_18535 NZ_CP086200.1 Protein Homology CDS 3953877 3956615 . + 0 ID=cds-WP_011260222.1;Parent=gene-LLC55_RS18515;Dbxref=Genbank:WP_011260222.1;Name=WP_011260222.1;Ontology_term=GO:0006605,GO:0006886,GO:0017038,GO:0005524;gbkey=CDS;gene=secA;go_function=ATP binding|0005524||IEA;go_process=protein targeting|0006605||IEA,intracellular protein transport|0006886||IEA,protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112773.1;locus_tag=LLC55_RS18515;product=preprotein translocase subunit SecA;protein_id=WP_011260222.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3957080 3957448 . + . ID=gene-LLC55_RS18520;Name=LLC55_RS18520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18520;old_locus_tag=LLC55_18540 NZ_CP086200.1 Protein Homology CDS 3957080 3957448 . + 0 ID=cds-WP_011409371.1;Parent=gene-LLC55_RS18520;Dbxref=Genbank:WP_011409371.1;Name=WP_011409371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506680.1;locus_tag=LLC55_RS18520;product=glyoxalase;protein_id=WP_011409371.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3957589 3958536 . + . ID=gene-LLC55_RS18525;Name=LLC55_RS18525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18525;old_locus_tag=LLC55_18545 NZ_CP086200.1 Protein Homology CDS 3957589 3958536 . + 0 ID=cds-WP_011260220.1;Parent=gene-LLC55_RS18525;Dbxref=Genbank:WP_011260220.1;Name=WP_011260220.1;Ontology_term=GO:0008413;gbkey=CDS;go_function=8-oxo-7%2C8-dihydroguanosine triphosphate pyrophosphatase activity|0008413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005910877.1;locus_tag=LLC55_RS18525;product=Nudix family hydrolase;protein_id=WP_011260220.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3958722 3959309 . - . ID=gene-LLC55_RS18530;Name=LLC55_RS18530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18530;old_locus_tag=LLC55_18550 NZ_CP086200.1 Protein Homology CDS 3958722 3959309 . - 0 ID=cds-WP_011260218.1;Parent=gene-LLC55_RS18530;Dbxref=Genbank:WP_011260218.1;Name=WP_011260218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155380.1;locus_tag=LLC55_RS18530;product=hypothetical protein;protein_id=WP_011260218.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3959423 3959499 . - . ID=gene-LLC55_RS18535;Name=LLC55_RS18535;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS18535;old_locus_tag=LLC55_18555 NZ_CP086200.1 cmsearch ncRNA 3959423 3959499 . - . ID=rna-LLC55_RS18535;Parent=gene-LLC55_RS18535;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18535;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3959423 3959499 . - . ID=exon-LLC55_RS18535-1;Parent=rna-LLC55_RS18535;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18535;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3959682 3960509 . - . ID=gene-LLC55_RS18540;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=LLC55_RS18540;old_locus_tag=LLC55_18560 NZ_CP086200.1 Protein Homology CDS 3959682 3960509 . - 0 ID=cds-WP_011260216.1;Parent=gene-LLC55_RS18540;Dbxref=Genbank:WP_011260216.1;Name=WP_011260216.1;Ontology_term=GO:0009086,GO:0004489;gbkey=CDS;gene=metF;go_function=methylenetetrahydrofolate reductase (NAD(P)H) activity|0004489||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155379.1;locus_tag=LLC55_RS18540;product=methylenetetrahydrofolate reductase [NAD(P)H];protein_id=WP_011260216.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3960549 3961931 . - . ID=gene-LLC55_RS18545;Name=LLC55_RS18545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18545;old_locus_tag=LLC55_18565 NZ_CP086200.1 Protein Homology CDS 3960549 3961931 . - 0 ID=cds-WP_075242169.1;Parent=gene-LLC55_RS18545;Dbxref=Genbank:WP_075242169.1;Name=WP_075242169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346430.1;locus_tag=LLC55_RS18545;product=hypothetical protein;protein_id=WP_075242169.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3962422 3963399 . + . ID=gene-LLC55_RS18550;Name=LLC55_RS18550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18550;old_locus_tag=LLC55_18570 NZ_CP086200.1 Protein Homology CDS 3962422 3963399 . + 0 ID=cds-WP_011260213.1;Parent=gene-LLC55_RS18550;Dbxref=Genbank:WP_011260213.1;Name=WP_011260213.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812340.1;locus_tag=LLC55_RS18550;product=NAD(P)H-quinone oxidoreductase;protein_id=WP_011260213.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3963696 3964226 . + . ID=gene-LLC55_RS18555;Name=LLC55_RS18555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18555;old_locus_tag=LLC55_18575;partial=true;pseudo=true;start_range=.,3963696 NZ_CP086200.1 Protein Homology CDS 3963696 3964226 . + 0 ID=cds-LLC55_RS18555;Parent=gene-LLC55_RS18555;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160284.1;locus_tag=LLC55_RS18555;partial=true;product=S8 family serine peptidase;pseudo=true;start_range=.,3963696;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3964306 3964709 . - . ID=gene-LLC55_RS18560;Name=LLC55_RS18560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18560;old_locus_tag=LLC55_18580;pseudo=true NZ_CP086200.1 Protein Homology CDS 3964306 3964709 . - 0 ID=cds-LLC55_RS18560;Parent=gene-LLC55_RS18560;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968728.1;locus_tag=LLC55_RS18560;product=VOC family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 3965087 3966022 . + . ID=gene-LLC55_RS18565;Name=LLC55_RS18565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18565;old_locus_tag=LLC55_18585 NZ_CP086200.1 Protein Homology CDS 3965087 3966022 . + 0 ID=cds-WP_069959991.1;Parent=gene-LLC55_RS18565;Dbxref=Genbank:WP_069959991.1;Name=WP_069959991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485244.1;locus_tag=LLC55_RS18565;product=Gfo/Idh/MocA family oxidoreductase;protein_id=WP_069959991.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3966463 3966539 . + . ID=gene-LLC55_RS18570;Name=LLC55_RS18570;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS18570;old_locus_tag=LLC55_18590 NZ_CP086200.1 cmsearch ncRNA 3966463 3966539 . + . ID=rna-LLC55_RS18570;Parent=gene-LLC55_RS18570;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18570;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3966463 3966539 . + . ID=exon-LLC55_RS18570-1;Parent=rna-LLC55_RS18570;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18570;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3967358 3967903 . + . ID=gene-LLC55_RS18575;Name=LLC55_RS18575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18575;old_locus_tag=LLC55_18595 NZ_CP086200.1 Protein Homology CDS 3967358 3967903 . + 0 ID=cds-WP_011260209.1;Parent=gene-LLC55_RS18575;Dbxref=Genbank:WP_011260209.1;Name=WP_011260209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260209.1;locus_tag=LLC55_RS18575;product=DUF2058 domain-containing protein;protein_id=WP_011260209.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3968132 3968689 . + . ID=gene-LLC55_RS18580;Name=LLC55_RS18580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18580;old_locus_tag=LLC55_18600 NZ_CP086200.1 Protein Homology CDS 3968132 3968689 . + 0 ID=cds-WP_075242167.1;Parent=gene-LLC55_RS18580;Dbxref=Genbank:WP_075242167.1;Name=WP_075242167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158826.1;locus_tag=LLC55_RS18580;product=DUF3228 family protein;protein_id=WP_075242167.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3968840 3969526 . + . ID=gene-LLC55_RS18585;Name=LLC55_RS18585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18585;old_locus_tag=LLC55_18605 NZ_CP086200.1 Protein Homology CDS 3968840 3969526 . + 0 ID=cds-WP_014502013.1;Parent=gene-LLC55_RS18585;Dbxref=Genbank:WP_014502013.1;Name=WP_014502013.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155370.1;locus_tag=LLC55_RS18585;product=hypothetical protein;protein_id=WP_014502013.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3970017 3970949 . + . ID=gene-LLC55_RS18590;Name=LLC55_RS18590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18590;old_locus_tag=LLC55_18610 NZ_CP086200.1 Protein Homology CDS 3970017 3970949 . + 0 ID=cds-WP_011260206.1;Parent=gene-LLC55_RS18590;Dbxref=Genbank:WP_011260206.1;Name=WP_011260206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155369.1;locus_tag=LLC55_RS18590;product=sulfotransferase domain-containing protein;protein_id=WP_011260206.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3971046 3971213 . - . ID=gene-LLC55_RS18595;Name=LLC55_RS18595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18595;old_locus_tag=LLC55_18615 NZ_CP086200.1 GeneMarkS-2+ CDS 3971046 3971213 . - 0 ID=cds-WP_228329770.1;Parent=gene-LLC55_RS18595;Dbxref=Genbank:WP_228329770.1;Name=WP_228329770.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS18595;product=hypothetical protein;protein_id=WP_228329770.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3971143 3971766 . + . ID=gene-LLC55_RS18600;Name=LLC55_RS18600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18600;old_locus_tag=LLC55_18620 NZ_CP086200.1 Protein Homology CDS 3971143 3971766 . + 0 ID=cds-WP_228329760.1;Parent=gene-LLC55_RS18600;Dbxref=Genbank:WP_228329760.1;Name=WP_228329760.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160285.1;locus_tag=LLC55_RS18600;product=class I SAM-dependent methyltransferase;protein_id=WP_228329760.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3971998 3973440 . - . ID=gene-LLC55_RS18605;Name=ahcY;gbkey=Gene;gene=ahcY;gene_biotype=protein_coding;locus_tag=LLC55_RS18605;old_locus_tag=LLC55_18625 NZ_CP086200.1 Protein Homology CDS 3971998 3973440 . - 0 ID=cds-WP_011260204.1;Parent=gene-LLC55_RS18605;Dbxref=Genbank:WP_011260204.1;Name=WP_011260204.1;Ontology_term=GO:0006730,GO:0004013;gbkey=CDS;gene=ahcY;go_function=adenosylhomocysteinase activity|0004013||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035988.1;locus_tag=LLC55_RS18605;product=adenosylhomocysteinase;protein_id=WP_011260204.1;transl_table=11 NZ_CP086200.1 cmsearch riboswitch 3973473 3973588 . - . ID=id-NZ_CP086200.1:3973473..3973588;Dbxref=RFAM:RF01057;Note=S-adenosyl-L-homocysteine riboswitch;bound_moiety=S-adenosyl-L-homocysteine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP086200.1 RefSeq pseudogene 3973841 3974164 . + . ID=gene-LLC55_RS18610;Name=LLC55_RS18610;end_range=3974164,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18610;old_locus_tag=LLC55_18630;partial=true;pseudo=true;start_range=.,3973841 NZ_CP086200.1 Protein Homology CDS 3973841 3974164 . + 0 ID=cds-LLC55_RS18610;Parent=gene-LLC55_RS18610;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006508,GO:0008236;end_range=3974164,.;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158615.1;locus_tag=LLC55_RS18610;partial=true;product=prolyl oligopeptidase family serine peptidase;pseudo=true;start_range=.,3973841;transl_table=11 NZ_CP086200.1 RefSeq gene 3974493 3977207 . + . ID=gene-LLC55_RS18615;Name=ppc;gbkey=Gene;gene=ppc;gene_biotype=protein_coding;locus_tag=LLC55_RS18615;old_locus_tag=LLC55_18635 NZ_CP086200.1 Protein Homology CDS 3974493 3977207 . + 0 ID=cds-WP_044756465.1;Parent=gene-LLC55_RS18615;Dbxref=Genbank:WP_044756465.1;Name=WP_044756465.1;Ontology_term=GO:0006099,GO:0015977,GO:0008964;gbkey=CDS;gene=ppc;go_function=phosphoenolpyruvate carboxylase activity|0008964||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,carbon fixation|0015977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155365.1;locus_tag=LLC55_RS18615;product=phosphoenolpyruvate carboxylase;protein_id=WP_044756465.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3977345 3977902 . + . ID=gene-LLC55_RS18620;Name=LLC55_RS18620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18620;old_locus_tag=LLC55_18640 NZ_CP086200.1 Protein Homology CDS 3977345 3977902 . + 0 ID=cds-WP_024710449.1;Parent=gene-LLC55_RS18620;Dbxref=Genbank:WP_024710449.1;Name=WP_024710449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112764.1;locus_tag=LLC55_RS18620;product=TetR/AcrR family transcriptional regulator;protein_id=WP_024710449.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3977966 3978253 . - . ID=gene-LLC55_RS18625;Name=LLC55_RS18625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18625;old_locus_tag=LLC55_18645 NZ_CP086200.1 GeneMarkS-2+ CDS 3977966 3978253 . - 0 ID=cds-WP_228329629.1;Parent=gene-LLC55_RS18625;Dbxref=Genbank:WP_228329629.1;Name=WP_228329629.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS18625;product=hypothetical protein;protein_id=WP_228329629.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3978417 3979736 . - . ID=gene-LLC55_RS18630;Name=LLC55_RS18630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18630;old_locus_tag=LLC55_18650 NZ_CP086200.1 Protein Homology CDS 3978417 3979736 . - 0 ID=cds-WP_109182117.1;Parent=gene-LLC55_RS18630;Dbxref=Genbank:WP_109182117.1;Name=WP_109182117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS18630;product=IS701-like element ISXo15 family transposase;protein_id=WP_109182117.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3980655 3980879 . - . ID=gene-LLC55_RS18635;Name=LLC55_RS18635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18635;old_locus_tag=LLC55_18655;partial=true;pseudo=true;start_range=.,3980655 NZ_CP086200.1 Protein Homology CDS 3980655 3980879 . - 0 ID=cds-LLC55_RS18635;Parent=gene-LLC55_RS18635;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155362.1;locus_tag=LLC55_RS18635;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3980655;transl_table=11 NZ_CP086200.1 RefSeq gene 3980878 3983634 . + . ID=gene-LLC55_RS18640;Name=LLC55_RS18640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18640;old_locus_tag=LLC55_18660 NZ_CP086200.1 Protein Homology CDS 3980878 3983634 . + 0 ID=cds-WP_011409360.1;Parent=gene-LLC55_RS18640;Dbxref=Genbank:WP_011409360.1;Name=WP_011409360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005910823.1;locus_tag=LLC55_RS18640;product=TonB-dependent receptor;protein_id=WP_011409360.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3983624 3985222 . + . ID=gene-LLC55_RS18645;Name=LLC55_RS18645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18645;old_locus_tag=LLC55_18665 NZ_CP086200.1 Protein Homology CDS 3983624 3985222 . + 0 ID=cds-WP_011260198.1;Parent=gene-LLC55_RS18645;Dbxref=Genbank:WP_011260198.1;Name=WP_011260198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159806.1;locus_tag=LLC55_RS18645;product=histidine-type phosphatase;protein_id=WP_011260198.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3985274 3986037 . + . ID=gene-LLC55_RS18650;Name=LLC55_RS18650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18650;old_locus_tag=LLC55_18670 NZ_CP086200.1 Protein Homology CDS 3985274 3985589 . + 0 ID=cds-WP_094187715.1-12;Parent=gene-LLC55_RS18650;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS18650;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 3985589 3986037 . + 2 ID=cds-WP_094187715.1-12;Parent=gene-LLC55_RS18650;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS18650;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3986383 3987594 . - . ID=gene-LLC55_RS18655;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=LLC55_RS18655;old_locus_tag=LLC55_18675 NZ_CP086200.1 Protein Homology CDS 3986383 3987594 . - 0 ID=cds-WP_005910819.1;Parent=gene-LLC55_RS18655;Dbxref=Genbank:WP_005910819.1;Name=WP_005910819.1;Ontology_term=GO:0006556,GO:0004478;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083625.1;locus_tag=LLC55_RS18655;product=methionine adenosyltransferase;protein_id=WP_005910819.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3987840 3988936 . + . ID=gene-LLC55_RS18660;Name=LLC55_RS18660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18660;old_locus_tag=LLC55_18680;pseudo=true NZ_CP086200.1 Protein Homology CDS 3987840 3988936 . + 0 ID=cds-LLC55_RS18660;Parent=gene-LLC55_RS18660;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970626.1;locus_tag=LLC55_RS18660;product=metal-dependent hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 3988933 3989755 . - . ID=gene-LLC55_RS18665;Name=LLC55_RS18665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18665;old_locus_tag=LLC55_18685;partial=true;pseudo=true;start_range=.,3988933 NZ_CP086200.1 Protein Homology CDS 3988933 3989755 . - 0 ID=cds-LLC55_RS18665;Parent=gene-LLC55_RS18665;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485197.1;locus_tag=LLC55_RS18665;partial=true;product=methyltransferase domain-containing protein;pseudo=true;start_range=.,3988933;transl_table=11 NZ_CP086200.1 RefSeq gene 3989783 3990781 . - . ID=gene-LLC55_RS18670;Name=dusB;gbkey=Gene;gene=dusB;gene_biotype=protein_coding;locus_tag=LLC55_RS18670;old_locus_tag=LLC55_18690 NZ_CP086200.1 Protein Homology CDS 3989783 3990781 . - 0 ID=cds-WP_011260196.1;Parent=gene-LLC55_RS18670;Dbxref=Genbank:WP_011260196.1;Name=WP_011260196.1;Ontology_term=GO:0008033,GO:0003824,GO:0016491,GO:0017150,GO:0050660;gbkey=CDS;gene=dusB;go_function=catalytic activity|0003824||IEA,oxidoreductase activity|0016491||IEA,tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050554.1;locus_tag=LLC55_RS18670;product=tRNA dihydrouridine synthase DusB;protein_id=WP_011260196.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3990891 3992984 . - . ID=gene-LLC55_RS18675;Name=LLC55_RS18675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18675;old_locus_tag=LLC55_18695 NZ_CP086200.1 Protein Homology CDS 3990891 3992984 . - 0 ID=cds-WP_027704209.1;Parent=gene-LLC55_RS18675;Dbxref=Genbank:WP_027704209.1;Name=WP_027704209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930931.1;locus_tag=LLC55_RS18675;product=carbohydrate-binding protein;protein_id=WP_027704209.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3993665 3994615 . - . ID=gene-LLC55_RS18680;Name=LLC55_RS18680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18680;old_locus_tag=LLC55_18700 NZ_CP086200.1 Protein Homology CDS 3993665 3994615 . - 0 ID=cds-WP_011409356.1;Parent=gene-LLC55_RS18680;Dbxref=Genbank:WP_011409356.1;Name=WP_011409356.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167865.1;locus_tag=LLC55_RS18680;product=ribokinase;protein_id=WP_011409356.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3994707 3996005 . - . ID=gene-LLC55_RS18685;Name=LLC55_RS18685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18685;old_locus_tag=LLC55_18705 NZ_CP086200.1 Protein Homology CDS 3994707 3996005 . - 0 ID=cds-WP_011409355.1;Parent=gene-LLC55_RS18685;Dbxref=Genbank:WP_011409355.1;Name=WP_011409355.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304462.1;locus_tag=LLC55_RS18685;product=nucleoside transporter NupC;protein_id=WP_011409355.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3996305 3996679 . - . ID=gene-LLC55_RS18690;Name=LLC55_RS18690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18690;old_locus_tag=LLC55_18710 NZ_CP086200.1 GeneMarkS-2+ CDS 3996305 3996679 . - 0 ID=cds-WP_153303323.1;Parent=gene-LLC55_RS18690;Dbxref=Genbank:WP_153303323.1;Name=WP_153303323.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS18690;product=hypothetical protein;protein_id=WP_153303323.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3997204 3998172 . + . ID=gene-LLC55_RS18695;Name=LLC55_RS18695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18695;old_locus_tag=LLC55_18715 NZ_CP086200.1 Protein Homology CDS 3997204 3998172 . + 0 ID=cds-WP_011409354.1;Parent=gene-LLC55_RS18695;Dbxref=Genbank:WP_011409354.1;Name=WP_011409354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930920.1;locus_tag=LLC55_RS18695;product=aldo/keto reductase;protein_id=WP_011409354.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3998553 3998792 . + . ID=gene-LLC55_RS18700;Name=LLC55_RS18700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18700;old_locus_tag=LLC55_18720 NZ_CP086200.1 Protein Homology CDS 3998553 3998792 . + 0 ID=cds-WP_027704205.1;Parent=gene-LLC55_RS18700;Dbxref=Genbank:WP_027704205.1;Name=WP_027704205.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269995.1;locus_tag=LLC55_RS18700;product=hemin uptake protein HemP;protein_id=WP_027704205.1;transl_table=11 NZ_CP086200.1 RefSeq gene 3998816 3998892 . - . ID=gene-LLC55_RS18705;Name=LLC55_RS18705;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS18705;old_locus_tag=LLC55_18725 NZ_CP086200.1 cmsearch ncRNA 3998816 3998892 . - . ID=rna-LLC55_RS18705;Parent=gene-LLC55_RS18705;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18705;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 3998816 3998892 . - . ID=exon-LLC55_RS18705-1;Parent=rna-LLC55_RS18705;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18705;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 3999429 4000076 . + . ID=gene-LLC55_RS18710;Name=LLC55_RS18710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18710;old_locus_tag=LLC55_18730 NZ_CP086200.1 Protein Homology CDS 3999429 4000076 . + 0 ID=cds-WP_011409353.1;Parent=gene-LLC55_RS18710;Dbxref=Genbank:WP_011409353.1;Name=WP_011409353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409353.1;locus_tag=LLC55_RS18710;product=hypothetical protein;protein_id=WP_011409353.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4000139 4000215 . + . ID=gene-LLC55_RS18715;Name=LLC55_RS18715;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS18715;old_locus_tag=LLC55_18735 NZ_CP086200.1 cmsearch ncRNA 4000139 4000215 . + . ID=rna-LLC55_RS18715;Parent=gene-LLC55_RS18715;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18715;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4000139 4000215 . + . ID=exon-LLC55_RS18715-1;Parent=rna-LLC55_RS18715;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18715;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4000235 4000309 . - . ID=gene-LLC55_RS18720;Name=LLC55_RS18720;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS18720;old_locus_tag=LLC55_18740 NZ_CP086200.1 cmsearch ncRNA 4000235 4000309 . - . ID=rna-LLC55_RS18720;Parent=gene-LLC55_RS18720;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18720;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4000235 4000309 . - . ID=exon-LLC55_RS18720-1;Parent=rna-LLC55_RS18720;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18720;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4000378 4000731 . - . ID=gene-LLC55_RS18725;Name=LLC55_RS18725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18725;old_locus_tag=LLC55_18745 NZ_CP086200.1 Protein Homology CDS 4000378 4000731 . - 0 ID=cds-WP_011260188.1;Parent=gene-LLC55_RS18725;Dbxref=Genbank:WP_011260188.1;Name=WP_011260188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303348.1;locus_tag=LLC55_RS18725;product=DMT family protein;protein_id=WP_011260188.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4000814 4001699 . - . ID=gene-LLC55_RS18730;Name=LLC55_RS18730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18730;old_locus_tag=LLC55_18750;pseudo=true NZ_CP086200.1 Protein Homology CDS 4000814 4001699 . - 0 ID=cds-LLC55_RS18730;Parent=gene-LLC55_RS18730;Note=frameshifted;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160361.1;locus_tag=LLC55_RS18730;product=ABC transporter permease subunit;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4001696 4002528 . - . ID=gene-LLC55_RS18735;Name=LLC55_RS18735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18735;old_locus_tag=LLC55_18755;pseudo=true NZ_CP086200.1 Protein Homology CDS 4001696 4002528 . - 0 ID=cds-LLC55_RS18735;Parent=gene-LLC55_RS18735;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972117.1;locus_tag=LLC55_RS18735;product=ABC transporter ATP-binding protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4002532 4003578 . - . ID=gene-LLC55_RS18740;Name=LLC55_RS18740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18740;old_locus_tag=LLC55_18760;pseudo=true NZ_CP086200.1 Protein Homology CDS 4002532 4003578 . - 0 ID=cds-LLC55_RS18740;Parent=gene-LLC55_RS18740;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346464.1;locus_tag=LLC55_RS18740;product=ABC transporter substrate-binding protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4003620 4004537 . - . ID=gene-LLC55_RS18745;Name=LLC55_RS18745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18745;old_locus_tag=LLC55_18765 NZ_CP086200.1 Protein Homology CDS 4003620 4004537 . - 0 ID=cds-WP_011409349.1;Parent=gene-LLC55_RS18745;Dbxref=Genbank:WP_011409349.1;Name=WP_011409349.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409349.1;locus_tag=LLC55_RS18745;product=TauD/TfdA family dioxygenase;protein_id=WP_011409349.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4004851 4007334 . - . ID=gene-LLC55_RS18750;Name=LLC55_RS18750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18750;old_locus_tag=LLC55_18770 NZ_CP086200.1 Protein Homology CDS 4004851 4007334 . - 0 ID=cds-WP_069959987.1;Parent=gene-LLC55_RS18750;Dbxref=Genbank:WP_069959987.1;Name=WP_069959987.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485158.1;locus_tag=LLC55_RS18750;product=FtsX-like permease family protein;protein_id=WP_069959987.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4007331 4007930 . - . ID=gene-LLC55_RS18755;Name=LLC55_RS18755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18755;old_locus_tag=LLC55_18775 NZ_CP086200.1 Protein Homology CDS 4007331 4007930 . - 0 ID=cds-WP_011260185.1;Parent=gene-LLC55_RS18755;Dbxref=Genbank:WP_011260185.1;Name=WP_011260185.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811879.1;locus_tag=LLC55_RS18755;product=ATP-binding cassette domain-containing protein;protein_id=WP_011260185.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4008040 4008708 . + . ID=gene-LLC55_RS18760;Name=LLC55_RS18760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18760;old_locus_tag=LLC55_18780 NZ_CP086200.1 Protein Homology CDS 4008040 4008708 . + 0 ID=cds-WP_011260184.1;Parent=gene-LLC55_RS18760;Dbxref=Genbank:WP_011260184.1;Name=WP_011260184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260184.1;locus_tag=LLC55_RS18760;product=arylesterase;protein_id=WP_011260184.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4008800 4009513 . + . ID=gene-LLC55_RS18765;Name=LLC55_RS18765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18765;old_locus_tag=LLC55_18785 NZ_CP086200.1 Protein Homology CDS 4008800 4009513 . + 0 ID=cds-WP_002811889.1;Parent=gene-LLC55_RS18765;Dbxref=Genbank:WP_002811889.1;Name=WP_002811889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019661106.1;locus_tag=LLC55_RS18765;product=response regulator transcription factor;protein_id=WP_002811889.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4009656 4010927 . + . ID=gene-LLC55_RS18770;Name=LLC55_RS18770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18770;old_locus_tag=LLC55_18790 NZ_CP086200.1 Protein Homology CDS 4009656 4010927 . + 0 ID=cds-WP_011409346.1;Parent=gene-LLC55_RS18770;Dbxref=Genbank:WP_011409346.1;Name=WP_011409346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900779.1;locus_tag=LLC55_RS18770;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_011409346.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4011285 4011361 . + . ID=gene-LLC55_RS18775;Name=LLC55_RS18775;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS18775;old_locus_tag=LLC55_18795 NZ_CP086200.1 cmsearch ncRNA 4011285 4011361 . + . ID=rna-LLC55_RS18775;Parent=gene-LLC55_RS18775;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18775;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4011285 4011361 . + . ID=exon-LLC55_RS18775-1;Parent=rna-LLC55_RS18775;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18775;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 4011501 4012202 . - . ID=gene-LLC55_RS18780;Name=LLC55_RS18780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18780;old_locus_tag=LLC55_18800;pseudo=true NZ_CP086200.1 Protein Homology CDS 4011501 4012202 . - 0 ID=cds-LLC55_RS18780;Parent=gene-LLC55_RS18780;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157323.1;locus_tag=LLC55_RS18780;product=SGNH/GDSL hydrolase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4012385 4012765 . + . ID=gene-LLC55_RS18785;Name=LLC55_RS18785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18785;old_locus_tag=LLC55_18805 NZ_CP086200.1 Protein Homology CDS 4012385 4012765 . + 0 ID=cds-WP_011409344.1;Parent=gene-LLC55_RS18785;Dbxref=Genbank:WP_011409344.1;Name=WP_011409344.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573596.1;locus_tag=LLC55_RS18785;product=diacylglycerol kinase;protein_id=WP_011409344.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4012861 4013499 . + . ID=gene-LLC55_RS18790;Name=LLC55_RS18790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18790;old_locus_tag=LLC55_18810 NZ_CP086200.1 Protein Homology CDS 4012861 4013499 . + 0 ID=cds-WP_041182264.1;Parent=gene-LLC55_RS18790;Dbxref=Genbank:WP_041182264.1;Name=WP_041182264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381647.1;locus_tag=LLC55_RS18790;product=LemA family protein;protein_id=WP_041182264.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4013837 4014727 . + . ID=gene-LLC55_RS18795;Name=LLC55_RS18795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18795;old_locus_tag=LLC55_18815 NZ_CP086200.1 Protein Homology CDS 4013837 4014727 . + 0 ID=cds-WP_027704105.1;Parent=gene-LLC55_RS18795;Dbxref=Genbank:WP_027704105.1;Name=WP_027704105.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472553.1;locus_tag=LLC55_RS18795;product=TPM domain-containing protein;protein_id=WP_027704105.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4014727 4015218 . + . ID=gene-LLC55_RS18800;Name=LLC55_RS18800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18800;old_locus_tag=LLC55_18820 NZ_CP086200.1 Protein Homology CDS 4014727 4015218 . + 0 ID=cds-WP_011260174.1;Parent=gene-LLC55_RS18800;Dbxref=Genbank:WP_011260174.1;Name=WP_011260174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972126.1;locus_tag=LLC55_RS18800;product=TPM domain-containing protein;protein_id=WP_011260174.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4015273 4016163 . + . ID=gene-LLC55_RS18805;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=LLC55_RS18805;old_locus_tag=LLC55_18825 NZ_CP086200.1 Protein Homology CDS 4015273 4016163 . + 0 ID=cds-WP_011260173.1;Parent=gene-LLC55_RS18805;Dbxref=Genbank:WP_011260173.1;Name=WP_011260173.1;Ontology_term=GO:0009249,GO:0008961,GO:0016020;gbkey=CDS;gene=lgt;go_component=membrane|0016020||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945080.1;locus_tag=LLC55_RS18805;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_011260173.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4016160 4016954 . + . ID=gene-LLC55_RS18810;Name=LLC55_RS18810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18810;old_locus_tag=LLC55_18830 NZ_CP086200.1 Protein Homology CDS 4016160 4016954 . + 0 ID=cds-WP_011260172.1;Parent=gene-LLC55_RS18810;Dbxref=Genbank:WP_011260172.1;Name=WP_011260172.1;Ontology_term=GO:0006231,GO:0004799;gbkey=CDS;go_function=thymidylate synthase activity|0004799||IEA;go_process=dTMP biosynthetic process|0006231||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260172.1;locus_tag=LLC55_RS18810;product=thymidylate synthase;protein_id=WP_011260172.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4017021 4017308 . + . ID=gene-LLC55_RS18815;Name=LLC55_RS18815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18815;old_locus_tag=LLC55_18835 NZ_CP086200.1 Protein Homology CDS 4017021 4017308 . + 0 ID=cds-WP_027704106.1;Parent=gene-LLC55_RS18815;Dbxref=Genbank:WP_027704106.1;Name=WP_027704106.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303563.1;locus_tag=LLC55_RS18815;product=hypothetical protein;protein_id=WP_027704106.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4017305 4017799 . + . ID=gene-LLC55_RS18820;Name=LLC55_RS18820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18820;old_locus_tag=LLC55_18840 NZ_CP086200.1 Protein Homology CDS 4017305 4017799 . + 0 ID=cds-WP_011260171.1;Parent=gene-LLC55_RS18820;Dbxref=Genbank:WP_011260171.1;Name=WP_011260171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157316.1;locus_tag=LLC55_RS18820;product=dihydrofolate reductase;protein_id=WP_011260171.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4017853 4018809 . - . ID=gene-LLC55_RS18825;Name=LLC55_RS18825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18825;old_locus_tag=LLC55_18845 NZ_CP086200.1 Protein Homology CDS 4017853 4018809 . - 0 ID=cds-WP_011260170.1;Parent=gene-LLC55_RS18825;Dbxref=Genbank:WP_011260170.1;Name=WP_011260170.1;Ontology_term=GO:0008803;gbkey=CDS;go_function=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity|0008803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444234.1;locus_tag=LLC55_RS18825;product=symmetrical bis(5'-nucleosyl)-tetraphosphatase;protein_id=WP_011260170.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4018838 4019221 . - . ID=gene-LLC55_RS18830;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=LLC55_RS18830;old_locus_tag=LLC55_18850 NZ_CP086200.1 Protein Homology CDS 4018838 4019221 . - 0 ID=cds-WP_011260169.1;Parent=gene-LLC55_RS18830;Dbxref=Genbank:WP_011260169.1;Name=WP_011260169.1;gbkey=CDS;gene=apaG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451488.1;locus_tag=LLC55_RS18830;product=Co2+/Mg2+ efflux protein ApaG;protein_id=WP_011260169.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4019258 4020046 . - . ID=gene-LLC55_RS18835;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=LLC55_RS18835;old_locus_tag=LLC55_18855 NZ_CP086200.1 Protein Homology CDS 4019258 4020046 . - 0 ID=cds-WP_011260168.1;Parent=gene-LLC55_RS18835;Dbxref=Genbank:WP_011260168.1;Name=WP_011260168.1;Ontology_term=GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260168.1;locus_tag=LLC55_RS18835;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=WP_011260168.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4020104 4020179 . - . ID=gene-LLC55_RS18840;Name=LLC55_RS18840;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS18840;old_locus_tag=LLC55_18860 NZ_CP086200.1 cmsearch ncRNA 4020104 4020179 . - . ID=rna-LLC55_RS18840;Parent=gene-LLC55_RS18840;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18840;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4020104 4020179 . - . ID=exon-LLC55_RS18840-1;Parent=rna-LLC55_RS18840;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18840;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4020303 4021274 . - . ID=gene-LLC55_RS18845;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=LLC55_RS18845;old_locus_tag=LLC55_18865 NZ_CP086200.1 Protein Homology CDS 4020303 4021274 . - 0 ID=cds-WP_011260167.1;Parent=gene-LLC55_RS18845;Dbxref=Genbank:WP_011260167.1;Name=WP_011260167.1;Ontology_term=GO:0008615,GO:0050570;gbkey=CDS;gene=pdxA;go_function=4-hydroxythreonine-4-phosphate dehydrogenase activity|0050570||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157313.1;locus_tag=LLC55_RS18845;product=4-hydroxythreonine-4-phosphate dehydrogenase PdxA;protein_id=WP_011260167.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4021295 4022686 . - . ID=gene-LLC55_RS18850;Name=LLC55_RS18850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18850;old_locus_tag=LLC55_18870 NZ_CP086200.1 Protein Homology CDS 4021295 4022686 . - 0 ID=cds-WP_011260166.1;Parent=gene-LLC55_RS18850;Dbxref=Genbank:WP_011260166.1;Name=WP_011260166.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157312.1;locus_tag=LLC55_RS18850;product=peptidylprolyl isomerase;protein_id=WP_011260166.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4022683 4025124 . - . ID=gene-LLC55_RS18855;Name=lptD;gbkey=Gene;gene=lptD;gene_biotype=protein_coding;locus_tag=LLC55_RS18855;old_locus_tag=LLC55_18875 NZ_CP086200.1 Protein Homology CDS 4022683 4025124 . - 0 ID=cds-WP_011409337.1;Parent=gene-LLC55_RS18855;Dbxref=Genbank:WP_011409337.1;Name=WP_011409337.1;gbkey=CDS;gene=lptD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036030.1;locus_tag=LLC55_RS18855;product=LPS-assembly protein LptD;protein_id=WP_011409337.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4025252 4026160 . - . ID=gene-LLC55_RS18860;Name=LLC55_RS18860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18860;old_locus_tag=LLC55_18880 NZ_CP086200.1 Protein Homology CDS 4025252 4026160 . - 0 ID=cds-WP_027704107.1;Parent=gene-LLC55_RS18860;Dbxref=Genbank:WP_027704107.1;Name=WP_027704107.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900762.1;locus_tag=LLC55_RS18860;product=histone deacetylase family protein;protein_id=WP_027704107.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4026198 4026755 . - . ID=gene-LLC55_RS18865;Name=LLC55_RS18865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18865;old_locus_tag=LLC55_18885 NZ_CP086200.1 Protein Homology CDS 4026198 4026755 . - 0 ID=cds-WP_011260163.1;Parent=gene-LLC55_RS18865;Dbxref=Genbank:WP_011260163.1;Name=WP_011260163.1;Ontology_term=GO:0009236,GO:0008817;gbkey=CDS;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502064.1;locus_tag=LLC55_RS18865;product=cob(I)yrinic acid a%2Cc-diamide adenosyltransferase;protein_id=WP_011260163.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4026759 4027337 . - . ID=gene-LLC55_RS18870;Name=LLC55_RS18870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18870;old_locus_tag=LLC55_18890 NZ_CP086200.1 Protein Homology CDS 4026759 4027337 . - 0 ID=cds-WP_011409335.1;Parent=gene-LLC55_RS18870;Dbxref=Genbank:WP_011409335.1;Name=WP_011409335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159102.1;locus_tag=LLC55_RS18870;product=hypothetical protein;protein_id=WP_011409335.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4027636 4028844 . + . ID=gene-LLC55_RS18875;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;gene_synonym=visB;locus_tag=LLC55_RS18875;old_locus_tag=LLC55_18895 NZ_CP086200.1 Protein Homology CDS 4027636 4028844 . + 0 ID=cds-WP_011409334.1;Parent=gene-LLC55_RS18875;Dbxref=Genbank:WP_011409334.1;Name=WP_011409334.1;Ontology_term=GO:0006744,GO:0008681,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiH;go_function=2-octaprenyl-6-methoxyphenol hydroxylase activity|0008681||IEA,oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171680.1;locus_tag=LLC55_RS18875;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_011409334.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4028841 4030022 . + . ID=gene-LLC55_RS18880;Name=LLC55_RS18880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18880;old_locus_tag=LLC55_18900 NZ_CP086200.1 Protein Homology CDS 4028841 4030022 . + 0 ID=cds-WP_011409333.1;Parent=gene-LLC55_RS18880;Dbxref=Genbank:WP_011409333.1;Name=WP_011409333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157306.1;locus_tag=LLC55_RS18880;product=UbiH/UbiF family hydroxylase;protein_id=WP_011409333.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4030150 4030873 . + . ID=gene-LLC55_RS18885;Name=LLC55_RS18885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18885;old_locus_tag=LLC55_18905;pseudo=true NZ_CP086200.1 Protein Homology CDS 4030150 4030873 . + 0 ID=cds-LLC55_RS18885;Parent=gene-LLC55_RS18885;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089440.1;locus_tag=LLC55_RS18885;product=alpha/beta fold hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4030990 4031511 . + . ID=gene-LLC55_RS18890;Name=LLC55_RS18890;end_range=4031511,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18890;old_locus_tag=LLC55_18910;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4030990 4031511 . + 0 ID=cds-LLC55_RS18890;Parent=gene-LLC55_RS18890;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4031511,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445209.1;locus_tag=LLC55_RS18890;partial=true;product=winged helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4031599 4032564 . + . ID=gene-LLC55_RS18895;Name=LLC55_RS18895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18895;old_locus_tag=LLC55_18915 NZ_CP086200.1 Protein Homology CDS 4031599 4032564 . + 0 ID=cds-WP_109182027.1-3;Parent=gene-LLC55_RS18895;Dbxref=Genbank:WP_109182027.1;Name=WP_109182027.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS18895;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182027.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4032569 4032952 . + . ID=gene-LLC55_RS18900;Name=LLC55_RS18900;end_range=4032952,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18900;old_locus_tag=LLC55_18920;partial=true;pseudo=true;start_range=.,4032569 NZ_CP086200.1 Protein Homology CDS 4032569 4032952 . + 0 ID=cds-LLC55_RS18900;Parent=gene-LLC55_RS18900;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0004803;end_range=4032952,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260016.1;locus_tag=LLC55_RS18900;partial=true;product=IS630 family transposase;pseudo=true;start_range=.,4032569;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4032949 4033411 . - . ID=gene-LLC55_RS18905;Name=LLC55_RS18905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18905;old_locus_tag=LLC55_18925;partial=true;pseudo=true;start_range=.,4032949 NZ_CP086200.1 Protein Homology CDS 4032949 4033411 . - 0 ID=cds-LLC55_RS18905;Parent=gene-LLC55_RS18905;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157302.1;locus_tag=LLC55_RS18905;partial=true;product=GntR family transcriptional regulator;pseudo=true;start_range=.,4032949;transl_table=11 NZ_CP086200.1 RefSeq gene 4033648 4034544 . + . ID=gene-LLC55_RS18910;Name=LLC55_RS18910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18910;old_locus_tag=LLC55_18930 NZ_CP086200.1 Protein Homology CDS 4033648 4034544 . + 0 ID=cds-WP_011260154.1;Parent=gene-LLC55_RS18910;Dbxref=Genbank:WP_011260154.1;Name=WP_011260154.1;Ontology_term=GO:0006725,GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;go_process=cellular aromatic compound metabolic process|0006725||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157301.1;locus_tag=LLC55_RS18910;product=gallate dioxygenase;protein_id=WP_011260154.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4034555 4034915 . + . ID=gene-LLC55_RS18915;Name=LLC55_RS18915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18915;old_locus_tag=LLC55_18935;pseudo=true NZ_CP086200.1 Protein Homology CDS 4034555 4034915 . + 0 ID=cds-LLC55_RS18915;Parent=gene-LLC55_RS18915;Note=extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols%3B part of the bacterial aromatic compound degradation pathway%3B frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157300.1;locus_tag=LLC55_RS18915;product=protocatechuate 3%2C4-dioxygenase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4034981 4035982 . + . ID=gene-LLC55_RS18920;Name=LLC55_RS18920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18920;old_locus_tag=LLC55_18940 NZ_CP086200.1 Protein Homology CDS 4034981 4035982 . + 0 ID=cds-WP_011409327.1;Parent=gene-LLC55_RS18920;Dbxref=Genbank:WP_011409327.1;Name=WP_011409327.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970087.1;locus_tag=LLC55_RS18920;product=LysR substrate-binding domain-containing protein;protein_id=WP_011409327.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4036167 4037645 . - . ID=gene-LLC55_RS18925;Name=LLC55_RS18925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18925;old_locus_tag=LLC55_18945 NZ_CP086200.1 Protein Homology CDS 4036167 4037645 . - 0 ID=cds-WP_011409326.1;Parent=gene-LLC55_RS18925;Dbxref=Genbank:WP_011409326.1;Name=WP_011409326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367439.1;locus_tag=LLC55_RS18925;product=AMP-binding protein;protein_id=WP_011409326.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4037848 4039317 . - . ID=gene-LLC55_RS18930;Name=LLC55_RS18930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18930;old_locus_tag=LLC55_18950 NZ_CP086200.1 Protein Homology CDS 4037848 4039317 . - 0 ID=cds-WP_011409325.1;Parent=gene-LLC55_RS18930;Dbxref=Genbank:WP_011409325.1;Name=WP_011409325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014077148.1;locus_tag=LLC55_RS18930;product=aldehyde dehydrogenase;protein_id=WP_011409325.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4039401 4040228 . - . ID=gene-LLC55_RS18935;Name=LLC55_RS18935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18935;old_locus_tag=LLC55_18955 NZ_CP086200.1 Protein Homology CDS 4039401 4040228 . - 0 ID=cds-WP_011409324.1;Parent=gene-LLC55_RS18935;Dbxref=Genbank:WP_011409324.1;Name=WP_011409324.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572593.1;locus_tag=LLC55_RS18935;product=p-hydroxycinnamoyl CoA hydratase/lyase;protein_id=WP_011409324.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4040274 4040747 . - . ID=gene-LLC55_RS18940;Name=LLC55_RS18940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18940;old_locus_tag=LLC55_18960 NZ_CP086200.1 Protein Homology CDS 4040274 4040747 . - 0 ID=cds-WP_011260149.1;Parent=gene-LLC55_RS18940;Dbxref=Genbank:WP_011260149.1;Name=WP_011260149.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157297.1;locus_tag=LLC55_RS18940;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_011260149.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4040875 4041282 . - . ID=gene-LLC55_RS18945;Name=LLC55_RS18945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18945;old_locus_tag=LLC55_18965 NZ_CP086200.1 Protein Homology CDS 4040875 4041282 . - 0 ID=cds-WP_011409323.1;Parent=gene-LLC55_RS18945;Dbxref=Genbank:WP_011409323.1;Name=WP_011409323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157296.1;locus_tag=LLC55_RS18945;product=hypothetical protein;protein_id=WP_011409323.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4041482 4042204 . - . ID=gene-LLC55_RS18950;Name=LLC55_RS18950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18950;old_locus_tag=LLC55_18970 NZ_CP086200.1 Protein Homology CDS 4041482 4042204 . - 0 ID=cds-WP_027703838.1;Parent=gene-LLC55_RS18950;Dbxref=Genbank:WP_027703838.1;Name=WP_027703838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449576.1;locus_tag=LLC55_RS18950;product=hypothetical protein;protein_id=WP_027703838.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4042287 4043192 . - . ID=gene-LLC55_RS18955;Name=LLC55_RS18955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18955;old_locus_tag=LLC55_18975 NZ_CP086200.1 Protein Homology CDS 4042287 4043192 . - 0 ID=cds-WP_011409321.1;Parent=gene-LLC55_RS18955;Dbxref=Genbank:WP_011409321.1;Name=WP_011409321.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157294.1;locus_tag=LLC55_RS18955;product=SMP-30/gluconolactonase/LRE family protein;protein_id=WP_011409321.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4043387 4044496 . + . ID=gene-LLC55_RS18960;Name=LLC55_RS18960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18960;old_locus_tag=LLC55_18980 NZ_CP086200.1 Protein Homology CDS 4043387 4044496 . + 0 ID=cds-WP_012444247.1;Parent=gene-LLC55_RS18960;Dbxref=Genbank:WP_012444247.1;Name=WP_012444247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300569.1;locus_tag=LLC55_RS18960;product=Gfo/Idh/MocA family oxidoreductase;protein_id=WP_012444247.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4044818 4045861 . - . ID=gene-LLC55_RS18965;Name=rlmM;gbkey=Gene;gene=rlmM;gene_biotype=protein_coding;locus_tag=LLC55_RS18965;old_locus_tag=LLC55_18985 NZ_CP086200.1 Protein Homology CDS 4044818 4045861 . - 0 ID=cds-WP_011409319.1;Parent=gene-LLC55_RS18965;Dbxref=Genbank:WP_011409319.1;Name=WP_011409319.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmM;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260144.1;locus_tag=LLC55_RS18965;product=23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM;protein_id=WP_011409319.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4045898 4046458 . - . ID=gene-LLC55_RS18970;Name=LLC55_RS18970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18970;old_locus_tag=LLC55_18990 NZ_CP086200.1 Protein Homology CDS 4045898 4046458 . - 0 ID=cds-WP_011409318.1;Parent=gene-LLC55_RS18970;Dbxref=Genbank:WP_011409318.1;Name=WP_011409318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572602.1;locus_tag=LLC55_RS18970;product=nucleoside deaminase;protein_id=WP_011409318.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4046458 4046868 . - . ID=gene-LLC55_RS18975;Name=LLC55_RS18975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS18975;old_locus_tag=LLC55_18995 NZ_CP086200.1 Protein Homology CDS 4046458 4046868 . - 0 ID=cds-WP_011409317.1;Parent=gene-LLC55_RS18975;Dbxref=Genbank:WP_011409317.1;Name=WP_011409317.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112744.1;locus_tag=LLC55_RS18975;product=hypothetical protein;protein_id=WP_011409317.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4047105 4047187 . + . ID=gene-LLC55_RS18980;Name=LLC55_RS18980;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS18980;old_locus_tag=LLC55_19000 NZ_CP086200.1 cmsearch ncRNA 4047105 4047187 . + . ID=rna-LLC55_RS18980;Parent=gene-LLC55_RS18980;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18980;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4047105 4047187 . + . ID=exon-LLC55_RS18980-1;Parent=rna-LLC55_RS18980;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS18980;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 4047552 4048398 . - . ID=gene-LLC55_RS18985;Name=LLC55_RS18985;end_range=4048398,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18985;old_locus_tag=LLC55_19005;partial=true;pseudo=true;start_range=.,4047552 NZ_CP086200.1 Protein Homology CDS 4047552 4048398 . - 0 ID=cds-LLC55_RS18985;Parent=gene-LLC55_RS18985;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=4048398,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965281.1;locus_tag=LLC55_RS18985;partial=true;product=DMT family transporter;pseudo=true;start_range=.,4047552;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4048439 4049238 . + . ID=gene-LLC55_RS18990;Name=LLC55_RS18990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18990;old_locus_tag=LLC55_19010;pseudo=true NZ_CP086200.1 Protein Homology CDS 4048439 4049238 . + 0 ID=cds-LLC55_RS18990;Parent=gene-LLC55_RS18990;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS18990;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4049249 4049344 . - . ID=gene-LLC55_RS18995;Name=LLC55_RS18995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS18995;old_locus_tag=LLC55_19015;partial=true;pseudo=true;start_range=.,4049249 NZ_CP086200.1 Protein Homology CDS 4049249 4049344 . - 0 ID=cds-LLC55_RS18995;Parent=gene-LLC55_RS18995;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340020.1;locus_tag=LLC55_RS18995;partial=true;product=EamA/RhaT family transporter;pseudo=true;start_range=.,4049249;transl_table=11 NZ_CP086200.1 RefSeq gene 4049446 4049607 . + . ID=gene-LLC55_RS19000;Name=LLC55_RS19000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19000;old_locus_tag=LLC55_19020 NZ_CP086200.1 Protein Homology CDS 4049446 4049607 . + 0 ID=cds-WP_115844438.1;Parent=gene-LLC55_RS19000;Dbxref=Genbank:WP_115844438.1;Name=WP_115844438.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025304.2;locus_tag=LLC55_RS19000;product=helix-turn-helix domain-containing protein;protein_id=WP_115844438.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4049812 4050575 . + . ID=gene-LLC55_RS19005;Name=LLC55_RS19005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19005;old_locus_tag=LLC55_19025 NZ_CP086200.1 Protein Homology CDS 4049812 4050127 . + 0 ID=cds-WP_094187736.1;Parent=gene-LLC55_RS19005;Dbxref=Genbank:WP_094187736.1;Name=WP_094187736.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS19005;product=IS5 family transposase;protein_id=WP_094187736.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4050127 4050575 . + 2 ID=cds-WP_094187736.1;Parent=gene-LLC55_RS19005;Dbxref=Genbank:WP_094187736.1;Name=WP_094187736.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS19005;product=IS5 family transposase;protein_id=WP_094187736.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4050584 4051237 . + . ID=gene-LLC55_RS19010;Name=LLC55_RS19010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19010;old_locus_tag=LLC55_19030;partial=true;pseudo=true;start_range=.,4050584 NZ_CP086200.1 Protein Homology CDS 4050584 4051237 . + 0 ID=cds-LLC55_RS19010;Parent=gene-LLC55_RS19010;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS19010;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,4050584;transl_table=11 NZ_CP086200.1 RefSeq gene 4051287 4051472 . - . ID=gene-LLC55_RS19015;Name=LLC55_RS19015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19015;old_locus_tag=LLC55_19035 NZ_CP086200.1 Protein Homology CDS 4051287 4051472 . - 0 ID=cds-WP_059317428.1;Parent=gene-LLC55_RS19015;Dbxref=Genbank:WP_059317428.1;Name=WP_059317428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502089.1;locus_tag=LLC55_RS19015;product=hypothetical protein;protein_id=WP_059317428.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4051665 4053404 . - . ID=gene-LLC55_RS19020;Name=LLC55_RS19020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19020;old_locus_tag=LLC55_19040 NZ_CP086200.1 Protein Homology CDS 4051665 4053404 . - 0 ID=cds-WP_011260138.1;Parent=gene-LLC55_RS19020;Dbxref=Genbank:WP_011260138.1;Name=WP_011260138.1;Ontology_term=GO:0006425,GO:0000166,GO:0004819,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,glutamine-tRNA ligase activity|0004819||IEA,ATP binding|0005524||IEA;go_process=glutaminyl-tRNA aminoacylation|0006425||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449568.1;locus_tag=LLC55_RS19020;product=glutamine--tRNA ligase/YqeY domain fusion protein;protein_id=WP_011260138.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4053809 4054450 . + . ID=gene-LLC55_RS19025;Name=LLC55_RS19025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19025;old_locus_tag=LLC55_19045 NZ_CP086200.1 Protein Homology CDS 4053809 4054450 . + 0 ID=cds-WP_011260137.1;Parent=gene-LLC55_RS19025;Dbxref=Genbank:WP_011260137.1;Name=WP_011260137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381590.1;locus_tag=LLC55_RS19025;product=glutathione S-transferase family protein;protein_id=WP_011260137.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4054452 4054688 . + . ID=gene-LLC55_RS19030;Name=LLC55_RS19030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19030;old_locus_tag=LLC55_19050 NZ_CP086200.1 Protein Homology CDS 4054452 4054688 . + 0 ID=cds-WP_012444257.1;Parent=gene-LLC55_RS19030;Dbxref=Genbank:WP_012444257.1;Name=WP_012444257.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444257.1;locus_tag=LLC55_RS19030;product=DUF2007 domain-containing protein;protein_id=WP_012444257.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4054803 4055267 . - . ID=gene-LLC55_RS19035;Name=LLC55_RS19035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19035;old_locus_tag=LLC55_19055 NZ_CP086200.1 Protein Homology CDS 4054803 4055267 . - 0 ID=cds-WP_011409313.1;Parent=gene-LLC55_RS19035;Dbxref=Genbank:WP_011409313.1;Name=WP_011409313.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367413.1;locus_tag=LLC55_RS19035;product=response regulator;protein_id=WP_011409313.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4055264 4056181 . - . ID=gene-LLC55_RS19040;Name=LLC55_RS19040;end_range=4056181,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19040;old_locus_tag=LLC55_19060;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4055264 4056181 . - 0 ID=cds-LLC55_RS19040;Parent=gene-LLC55_RS19040;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4056181,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900734.1;locus_tag=LLC55_RS19040;partial=true;product=ATP-binding protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4056091 4056567 . - . ID=gene-LLC55_RS19045;Name=LLC55_RS19045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19045;old_locus_tag=LLC55_19065 NZ_CP086200.1 GeneMarkS-2+ CDS 4056091 4056567 . - 0 ID=cds-WP_011257704.1;Parent=gene-LLC55_RS19045;Dbxref=Genbank:WP_011257704.1;Name=WP_011257704.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS19045;product=IS5 family transposase;protein_id=WP_011257704.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4056533 4056889 . - . ID=gene-LLC55_RS19050;Name=LLC55_RS19050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19050;old_locus_tag=LLC55_19070 NZ_CP086200.1 GeneMarkS-2+ CDS 4056533 4056889 . - 0 ID=cds-WP_011407260.1;Parent=gene-LLC55_RS19050;Dbxref=Genbank:WP_011407260.1;Name=WP_011407260.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS19050;product=IS5 family transposase;protein_id=WP_011407260.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4056933 4057403 . + . ID=gene-LLC55_RS19055;Name=LLC55_RS19055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19055;old_locus_tag=LLC55_19075;partial=true;pseudo=true;start_range=.,4056933 NZ_CP086200.1 Protein Homology CDS 4056933 4057403 . + 0 ID=cds-LLC55_RS19055;Parent=gene-LLC55_RS19055;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409568.1;locus_tag=LLC55_RS19055;partial=true;product=IS701 family transposase;pseudo=true;start_range=.,4056933;transl_table=11 NZ_CP086200.1 RefSeq gene 4057342 4057668 . - . ID=gene-LLC55_RS19060;Name=LLC55_RS19060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19060;old_locus_tag=LLC55_19080 NZ_CP086200.1 GeneMarkS-2+ CDS 4057342 4057668 . - 0 ID=cds-WP_075240877.1;Parent=gene-LLC55_RS19060;Dbxref=Genbank:WP_075240877.1;Name=WP_075240877.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS19060;product=hypothetical protein;protein_id=WP_075240877.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4057631 4058272 . - . ID=gene-LLC55_RS19065;Name=LLC55_RS19065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19065;old_locus_tag=LLC55_19085 NZ_CP086200.1 Protein Homology CDS 4057631 4058272 . - 0 ID=cds-WP_011409312.1;Parent=gene-LLC55_RS19065;Dbxref=Genbank:WP_011409312.1;Name=WP_011409312.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300708.1;locus_tag=LLC55_RS19065;product=hypothetical protein;protein_id=WP_011409312.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4058335 4058841 . - . ID=gene-LLC55_RS19070;Name=LLC55_RS19070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19070;old_locus_tag=LLC55_19090 NZ_CP086200.1 Protein Homology CDS 4058335 4058841 . - 0 ID=cds-WP_011409311.1;Parent=gene-LLC55_RS19070;Dbxref=Genbank:WP_011409311.1;Name=WP_011409311.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019335.2;locus_tag=LLC55_RS19070;product=TonB-dependent receptor plug domain-containing protein;protein_id=WP_011409311.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4058892 4059934 . - . ID=gene-LLC55_RS19075;Name=LLC55_RS19075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19075;old_locus_tag=LLC55_19095;pseudo=true NZ_CP086200.1 Protein Homology CDS 4058892 4059934 . - 0 ID=cds-LLC55_RS19075;Parent=gene-LLC55_RS19075;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS19075;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4060043 4061350 . - . ID=gene-LLC55_RS19080;Name=LLC55_RS19080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19080;old_locus_tag=LLC55_19100 NZ_CP086200.1 Protein Homology CDS 4060043 4061350 . - 0 ID=cds-WP_041182257.1;Parent=gene-LLC55_RS19080;Dbxref=Genbank:WP_041182257.1;Name=WP_041182257.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260131.1;locus_tag=LLC55_RS19080;product=MFS transporter;protein_id=WP_041182257.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4061512 4063551 . - . ID=gene-LLC55_RS19085;Name=LLC55_RS19085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19085;old_locus_tag=LLC55_19105 NZ_CP086200.1 Protein Homology CDS 4061512 4063551 . - 0 ID=cds-WP_011260130.1;Parent=gene-LLC55_RS19085;Dbxref=Genbank:WP_011260130.1;Name=WP_011260130.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300705.1;locus_tag=LLC55_RS19085;product=NADPH-dependent 2%2C4-dienoyl-CoA reductase;protein_id=WP_011260130.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4063759 4064781 . - . ID=gene-LLC55_RS19090;Name=LLC55_RS19090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19090;old_locus_tag=LLC55_19110 NZ_CP086200.1 Protein Homology CDS 4063759 4064781 . - 0 ID=cds-WP_011260129.1;Parent=gene-LLC55_RS19090;Dbxref=Genbank:WP_011260129.1;Name=WP_011260129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005998400.1;locus_tag=LLC55_RS19090;product=zinc-binding alcohol dehydrogenase family protein;protein_id=WP_011260129.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4065197 4066294 . + . ID=gene-LLC55_RS19095;Name=LLC55_RS19095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19095;old_locus_tag=LLC55_19115 NZ_CP086200.1 Protein Homology CDS 4065197 4066294 . + 0 ID=cds-WP_011409308.1;Parent=gene-LLC55_RS19095;Dbxref=Genbank:WP_011409308.1;Name=WP_011409308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171142.1;locus_tag=LLC55_RS19095;product=OmpA family protein;protein_id=WP_011409308.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4066487 4066996 . + . ID=gene-LLC55_RS19100;Name=LLC55_RS19100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19100;old_locus_tag=LLC55_19120 NZ_CP086200.1 Protein Homology CDS 4066487 4066996 . + 0 ID=cds-WP_011260127.1;Parent=gene-LLC55_RS19100;Dbxref=Genbank:WP_011260127.1;Name=WP_011260127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156231.1;locus_tag=LLC55_RS19100;product=hypothetical protein;protein_id=WP_011260127.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4067016 4067876 . + . ID=gene-LLC55_RS19105;Name=LLC55_RS19105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19105;old_locus_tag=LLC55_19125 NZ_CP086200.1 Protein Homology CDS 4067016 4067876 . + 0 ID=cds-WP_011260126.1;Parent=gene-LLC55_RS19105;Dbxref=Genbank:WP_011260126.1;Name=WP_011260126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156232.1;locus_tag=LLC55_RS19105;product=pseudouridine synthase;protein_id=WP_011260126.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4067827 4068219 . - . ID=gene-LLC55_RS19110;Name=LLC55_RS19110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19110;old_locus_tag=LLC55_19130 NZ_CP086200.1 Protein Homology CDS 4067827 4068219 . - 0 ID=cds-WP_011409307.1;Parent=gene-LLC55_RS19110;Dbxref=Genbank:WP_011409307.1;Name=WP_011409307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156233.1;locus_tag=LLC55_RS19110;product=hypothetical protein;protein_id=WP_011409307.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4068222 4069430 . - . ID=gene-LLC55_RS19115;Name=kbl;gbkey=Gene;gene=kbl;gene_biotype=protein_coding;locus_tag=LLC55_RS19115;old_locus_tag=LLC55_19135 NZ_CP086200.1 Protein Homology CDS 4068222 4069430 . - 0 ID=cds-WP_011260125.1;Parent=gene-LLC55_RS19115;Dbxref=Genbank:WP_011260125.1;Name=WP_011260125.1;Ontology_term=GO:0006567,GO:0008890;gbkey=CDS;gene=kbl;go_function=glycine C-acetyltransferase activity|0008890||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156234.1;locus_tag=LLC55_RS19115;product=glycine C-acetyltransferase;protein_id=WP_011260125.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4069521 4070618 . + . ID=gene-LLC55_RS19120;Name=LLC55_RS19120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19120;old_locus_tag=LLC55_19140 NZ_CP086200.1 Protein Homology CDS 4069521 4070618 . + 0 ID=cds-WP_011260124.1;Parent=gene-LLC55_RS19120;Dbxref=Genbank:WP_011260124.1;Name=WP_011260124.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089499.1;locus_tag=LLC55_RS19120;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_011260124.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4070622 4071482 . + . ID=gene-LLC55_RS19125;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=LLC55_RS19125;old_locus_tag=LLC55_19145 NZ_CP086200.1 Protein Homology CDS 4070622 4071482 . + 0 ID=cds-WP_011260123.1;Parent=gene-LLC55_RS19125;Dbxref=Genbank:WP_011260123.1;Name=WP_011260123.1;Ontology_term=GO:0008272,GO:0015419,GO:0005886,GO:0055052;gbkey=CDS;gene=cysT;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transport|0008272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036155.1;locus_tag=LLC55_RS19125;product=sulfate ABC transporter permease subunit CysT;protein_id=WP_011260123.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4071479 4072432 . + . ID=gene-LLC55_RS19130;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=LLC55_RS19130;old_locus_tag=LLC55_19150 NZ_CP086200.1 Protein Homology CDS 4071479 4072432 . + 0 ID=cds-WP_011260122.1;Parent=gene-LLC55_RS19130;Dbxref=Genbank:WP_011260122.1;Name=WP_011260122.1;Ontology_term=GO:0008272,GO:0015419,GO:0005886,GO:0055052;gbkey=CDS;gene=cysW;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transport|0008272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158531.1;locus_tag=LLC55_RS19130;product=sulfate ABC transporter permease subunit CysW;protein_id=WP_011260122.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4072440 4073474 . + . ID=gene-LLC55_RS19135;Name=LLC55_RS19135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19135;old_locus_tag=LLC55_19155 NZ_CP086200.1 Protein Homology CDS 4072440 4073474 . + 0 ID=cds-WP_027703808.1;Parent=gene-LLC55_RS19135;Dbxref=Genbank:WP_027703808.1;Name=WP_027703808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305108.1;locus_tag=LLC55_RS19135;product=sulfate/molybdate ABC transporter ATP-binding protein;protein_id=WP_027703808.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4073828 4074541 . + . ID=gene-LLC55_RS19140;Name=LLC55_RS19140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19140;old_locus_tag=LLC55_19160 NZ_CP086200.1 Protein Homology CDS 4073828 4074541 . + 0 ID=cds-WP_011409306.1;Parent=gene-LLC55_RS19140;Dbxref=Genbank:WP_011409306.1;Name=WP_011409306.1;Ontology_term=GO:0015288;gbkey=CDS;go_function=porin activity|0015288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159554.1;locus_tag=LLC55_RS19140;product=TorF family putative porin;protein_id=WP_011409306.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4074611 4075645 . - . ID=gene-LLC55_RS19145;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=LLC55_RS19145;old_locus_tag=LLC55_19165 NZ_CP086200.1 Protein Homology CDS 4074611 4075645 . - 0 ID=cds-WP_011260119.1;Parent=gene-LLC55_RS19145;Dbxref=Genbank:WP_011260119.1;Name=WP_011260119.1;Ontology_term=GO:0006567,GO:0008743;gbkey=CDS;gene=tdh;go_function=L-threonine 3-dehydrogenase activity|0008743||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164734.1;locus_tag=LLC55_RS19145;product=L-threonine 3-dehydrogenase;protein_id=WP_011260119.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4076148 4078481 . - . ID=gene-LLC55_RS19150;Name=LLC55_RS19150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19150;old_locus_tag=LLC55_19170 NZ_CP086200.1 Protein Homology CDS 4076148 4078481 . - 0 ID=cds-WP_075242295.1;Parent=gene-LLC55_RS19150;Dbxref=Genbank:WP_075242295.1;Name=WP_075242295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571636.1;locus_tag=LLC55_RS19150;product=TonB-dependent receptor;protein_id=WP_075242295.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4078537 4080526 . + . ID=gene-LLC55_RS19155;Name=LLC55_RS19155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19155;old_locus_tag=LLC55_19175;partial=true;pseudo=true;start_range=.,4078537 NZ_CP086200.1 Protein Homology CDS 4078537 4080526 . + 0 ID=cds-LLC55_RS19155;Parent=gene-LLC55_RS19155;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004629;gbkey=CDS;go_function=phospholipase C activity|0004629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115285.1;locus_tag=LLC55_RS19155;partial=true;product=phospholipase C%2C phosphocholine-specific;pseudo=true;start_range=.,4078537;transl_table=11 NZ_CP086200.1 RefSeq gene 4080768 4082843 . + . ID=gene-LLC55_RS19160;Name=LLC55_RS19160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19160;old_locus_tag=LLC55_19180 NZ_CP086200.1 Protein Homology CDS 4080768 4082843 . + 0 ID=cds-WP_027703644.1;Parent=gene-LLC55_RS19160;Dbxref=Genbank:WP_027703644.1;Name=WP_027703644.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156243.1;locus_tag=LLC55_RS19160;product=S46 family peptidase;protein_id=WP_027703644.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4082935 4083579 . + . ID=gene-LLC55_RS19165;Name=LLC55_RS19165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19165;old_locus_tag=LLC55_19185 NZ_CP086200.1 Protein Homology CDS 4082935 4083579 . + 0 ID=cds-WP_011409301.1;Parent=gene-LLC55_RS19165;Dbxref=Genbank:WP_011409301.1;Name=WP_011409301.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910762.1;locus_tag=LLC55_RS19165;product=histidine phosphatase family protein;protein_id=WP_011409301.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4084293 4084369 . - . ID=gene-LLC55_RS19170;Name=LLC55_RS19170;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS19170;old_locus_tag=LLC55_19190 NZ_CP086200.1 cmsearch ncRNA 4084293 4084369 . - . ID=rna-LLC55_RS19170;Parent=gene-LLC55_RS19170;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS19170;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4084293 4084369 . - . ID=exon-LLC55_RS19170-1;Parent=rna-LLC55_RS19170;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS19170;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4084552 4085850 . + . ID=gene-LLC55_RS19175;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=LLC55_RS19175;old_locus_tag=LLC55_19195 NZ_CP086200.1 Protein Homology CDS 4084552 4085850 . + 0 ID=cds-WP_011409300.1;Parent=gene-LLC55_RS19175;Dbxref=Genbank:WP_011409300.1;Name=WP_011409300.1;Ontology_term=GO:0009396,GO:0004326,GO:0005524,GO:0016874;gbkey=CDS;gene=folC;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409300.1;locus_tag=LLC55_RS19175;product=bifunctional tetrahydrofolate synthase/dihydrofolate synthase;protein_id=WP_011409300.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4085918 4087000 . + . ID=gene-LLC55_RS19180;Name=LLC55_RS19180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19180;old_locus_tag=LLC55_19200 NZ_CP086200.1 Protein Homology CDS 4085918 4087000 . + 0 ID=cds-WP_011260113.1;Parent=gene-LLC55_RS19180;Dbxref=Genbank:WP_011260113.1;Name=WP_011260113.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301876.1;locus_tag=LLC55_RS19180;product=SPOR domain-containing protein;protein_id=WP_011260113.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4087215 4087961 . + . ID=gene-LLC55_RS19185;Name=LLC55_RS19185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19185;old_locus_tag=LLC55_19205 NZ_CP086200.1 Protein Homology CDS 4087215 4087961 . + 0 ID=cds-WP_011409299.1;Parent=gene-LLC55_RS19185;Dbxref=Genbank:WP_011409299.1;Name=WP_011409299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301875.1;locus_tag=LLC55_RS19185;product=CvpA family protein;protein_id=WP_011409299.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4087992 4089458 . + . ID=gene-LLC55_RS19190;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=LLC55_RS19190;old_locus_tag=LLC55_19210 NZ_CP086200.1 Protein Homology CDS 4087992 4089458 . + 0 ID=cds-WP_011409298.1;Parent=gene-LLC55_RS19190;Dbxref=Genbank:WP_011409298.1;Name=WP_011409298.1;Ontology_term=GO:0009152,GO:0004044;gbkey=CDS;gene=purF;go_function=amidophosphoribosyltransferase activity|0004044||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806604.1;locus_tag=LLC55_RS19190;product=amidophosphoribosyltransferase;protein_id=WP_011409298.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4089597 4090421 . + . ID=gene-LLC55_RS19195;Name=LLC55_RS19195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19195;old_locus_tag=LLC55_19215 NZ_CP086200.1 Protein Homology CDS 4089597 4090421 . + 0 ID=cds-WP_011409297.1;Parent=gene-LLC55_RS19195;Dbxref=Genbank:WP_011409297.1;Name=WP_011409297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115654.1;locus_tag=LLC55_RS19195;product=ferritin-like domain-containing protein;protein_id=WP_011409297.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4090456 4090533 . - . ID=gene-LLC55_RS19200;Name=LLC55_RS19200;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS19200;old_locus_tag=LLC55_19220 NZ_CP086200.1 cmsearch ncRNA 4090456 4090533 . - . ID=rna-LLC55_RS19200;Parent=gene-LLC55_RS19200;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS19200;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4090456 4090533 . - . ID=exon-LLC55_RS19200-1;Parent=rna-LLC55_RS19200;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS19200;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 4091098 4091223 . + . ID=gene-LLC55_RS19205;Name=LLC55_RS19205;end_range=4091223,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19205;old_locus_tag=LLC55_19225;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4091098 4091223 . + 0 ID=cds-LLC55_RS19205;Parent=gene-LLC55_RS19205;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4091223,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506851.1;locus_tag=LLC55_RS19205;partial=true;product=peptidyl-Asp metalloendopeptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4091490 4091909 . + . ID=gene-LLC55_RS19210;Name=LLC55_RS19210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19210;old_locus_tag=LLC55_19230 NZ_CP086200.1 Protein Homology CDS 4091490 4091909 . + 0 ID=cds-WP_011260109.1;Parent=gene-LLC55_RS19210;Dbxref=Genbank:WP_011260109.1;Name=WP_011260109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368563.1;locus_tag=LLC55_RS19210;product=hypothetical protein;protein_id=WP_011260109.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4092089 4092832 . - . ID=gene-LLC55_RS19215;Name=lpxH;gbkey=Gene;gene=lpxH;gene_biotype=protein_coding;locus_tag=LLC55_RS19215;old_locus_tag=LLC55_19235 NZ_CP086200.1 Protein Homology CDS 4092089 4092832 . - 0 ID=cds-WP_011260108.1;Parent=gene-LLC55_RS19215;Dbxref=Genbank:WP_011260108.1;Name=WP_011260108.1;Ontology_term=GO:0009245,GO:0008758;gbkey=CDS;gene=lpxH;go_function=UDP-2%2C3-diacylglucosamine hydrolase activity|0008758||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439087.1;locus_tag=LLC55_RS19215;product=UDP-2%2C3-diacylglucosamine diphosphatase;protein_id=WP_011260108.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4093480 4094022 . - . ID=gene-LLC55_RS19220;Name=LLC55_RS19220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19220;old_locus_tag=LLC55_19240 NZ_CP086200.1 Protein Homology CDS 4093480 4094022 . - 0 ID=cds-WP_011409295.1;Parent=gene-LLC55_RS19220;Dbxref=Genbank:WP_011409295.1;Name=WP_011409295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409295.1;locus_tag=LLC55_RS19220;product=phosphatase PAP2 family protein;protein_id=WP_011409295.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4094003 4095139 . - . ID=gene-LLC55_RS19225;Name=LLC55_RS19225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19225;old_locus_tag=LLC55_19245 NZ_CP086200.1 Protein Homology CDS 4094003 4095139 . - 0 ID=cds-WP_075242294.1;Parent=gene-LLC55_RS19225;Dbxref=Genbank:WP_075242294.1;Name=WP_075242294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922250.1;locus_tag=LLC55_RS19225;product=glycosyltransferase family 1 protein;protein_id=WP_075242294.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4095344 4096864 . - . ID=gene-LLC55_RS19230;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=LLC55_RS19230;old_locus_tag=LLC55_19250 NZ_CP086200.1 Protein Homology CDS 4095344 4096864 . - 0 ID=cds-WP_012445948.1;Parent=gene-LLC55_RS19230;Dbxref=Genbank:WP_012445948.1;Name=WP_012445948.1;Ontology_term=GO:0006798,GO:0000287,GO:0004309;gbkey=CDS;gene=ppx;go_function=magnesium ion binding|0000287||IEA,exopolyphosphatase activity|0004309||IEA;go_process=polyphosphate catabolic process|0006798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304895.1;locus_tag=LLC55_RS19230;product=exopolyphosphatase;protein_id=WP_012445948.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4097042 4099144 . - . ID=gene-LLC55_RS19235;Name=ppk1;gbkey=Gene;gene=ppk1;gene_biotype=protein_coding;locus_tag=LLC55_RS19235;old_locus_tag=LLC55_19255 NZ_CP086200.1 Protein Homology CDS 4097042 4099144 . - 0 ID=cds-WP_011260104.1;Parent=gene-LLC55_RS19235;Dbxref=Genbank:WP_011260104.1;Name=WP_011260104.1;Ontology_term=GO:0006799,GO:0008976,GO:0009358;gbkey=CDS;gene=ppk1;go_component=polyphosphate kinase complex|0009358||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=polyphosphate biosynthetic process|0006799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483747.1;locus_tag=LLC55_RS19235;product=polyphosphate kinase 1;protein_id=WP_011260104.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4099260 4100588 . - . ID=gene-LLC55_RS19240;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=LLC55_RS19240;old_locus_tag=LLC55_19260 NZ_CP086200.1 Protein Homology CDS 4099260 4100588 . - 0 ID=cds-WP_012445946.1;Parent=gene-LLC55_RS19240;Dbxref=Genbank:WP_012445946.1;Name=WP_012445946.1;Ontology_term=GO:0000160,GO:0006796,GO:0000155;gbkey=CDS;gene=phoR;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158112.1;locus_tag=LLC55_RS19240;product=phosphate regulon sensor histidine kinase PhoR;protein_id=WP_012445946.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4100661 4101350 . - . ID=gene-LLC55_RS19245;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=LLC55_RS19245;old_locus_tag=LLC55_19265 NZ_CP086200.1 Protein Homology CDS 4100661 4101350 . - 0 ID=cds-WP_011260102.1;Parent=gene-LLC55_RS19245;Dbxref=Genbank:WP_011260102.1;Name=WP_011260102.1;Ontology_term=GO:0000160,GO:0006355,GO:0006796,GO:0000156,GO:0003700;gbkey=CDS;gene=phoB;go_function=phosphorelay response regulator activity|0000156||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806631.1;locus_tag=LLC55_RS19245;product=phosphate regulon transcriptional regulator PhoB;protein_id=WP_011260102.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4101531 4103237 . - . ID=gene-LLC55_RS19250;Name=LLC55_RS19250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19250;old_locus_tag=LLC55_19270 NZ_CP086200.1 Protein Homology CDS 4101531 4103237 . - 0 ID=cds-WP_027703647.1;Parent=gene-LLC55_RS19250;Dbxref=Genbank:WP_027703647.1;Name=WP_027703647.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378377.1;locus_tag=LLC55_RS19250;product=M48 family metalloprotease;protein_id=WP_027703647.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4103327 4103635 . + . ID=gene-LLC55_RS19255;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=LLC55_RS19255;old_locus_tag=LLC55_19275 NZ_CP086200.1 Protein Homology CDS 4103327 4103635 . + 0 ID=cds-WP_012445944.1;Parent=gene-LLC55_RS19255;Dbxref=Genbank:WP_012445944.1;Name=WP_012445944.1;Ontology_term=GO:0015036;gbkey=CDS;gene=grxC;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927845.1;locus_tag=LLC55_RS19255;product=glutaredoxin 3;protein_id=WP_012445944.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4103632 4104027 . + . ID=gene-LLC55_RS19260;Name=LLC55_RS19260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19260;old_locus_tag=LLC55_19280 NZ_CP086200.1 Protein Homology CDS 4103632 4104027 . + 0 ID=cds-WP_011260099.1;Parent=gene-LLC55_RS19260;Dbxref=Genbank:WP_011260099.1;Name=WP_011260099.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483760.1;locus_tag=LLC55_RS19260;product=carboxymuconolactone decarboxylase family protein;protein_id=WP_011260099.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4104178 4104947 . + . ID=gene-LLC55_RS19265;Name=LLC55_RS19265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19265;old_locus_tag=LLC55_19285;pseudo=true NZ_CP086200.1 Protein Homology CDS 4104178 4104947 . + 0 ID=cds-LLC55_RS19265;Parent=gene-LLC55_RS19265;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS19265;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4104957 4105532 . + . ID=gene-LLC55_RS19270;Name=LLC55_RS19270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19270;old_locus_tag=LLC55_19290;partial=true;pseudo=true;start_range=.,4104957 NZ_CP086200.1 Protein Homology CDS 4104957 4105532 . + 0 ID=cds-LLC55_RS19270;Parent=gene-LLC55_RS19270;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS19270;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;start_range=.,4104957;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4105606 4106187 . - . ID=gene-LLC55_RS19275;Name=LLC55_RS19275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19275;old_locus_tag=LLC55_19295;partial=true;pseudo=true;start_range=.,4105606 NZ_CP086200.1 Protein Homology CDS 4105606 4106187 . - 0 ID=cds-LLC55_RS19275;Parent=gene-LLC55_RS19275;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994157.1;locus_tag=LLC55_RS19275;partial=true;product=DNA-binding response regulator;pseudo=true;start_range=.,4105606;transl_table=11 NZ_CP086200.1 RefSeq gene 4106312 4106827 . + . ID=gene-LLC55_RS19280;Name=LLC55_RS19280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19280;old_locus_tag=LLC55_19300 NZ_CP086200.1 Protein Homology CDS 4106312 4106827 . + 0 ID=cds-WP_011409289.1;Parent=gene-LLC55_RS19280;Dbxref=Genbank:WP_011409289.1;Name=WP_011409289.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160446.1;locus_tag=LLC55_RS19280;product=SgcJ/EcaC family oxidoreductase;protein_id=WP_011409289.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4106923 4107573 . + . ID=gene-LLC55_RS19285;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=LLC55_RS19285;old_locus_tag=LLC55_19305 NZ_CP086200.1 Protein Homology CDS 4106923 4107573 . + 0 ID=cds-WP_069959982.1;Parent=gene-LLC55_RS19285;Dbxref=Genbank:WP_069959982.1;Name=WP_069959982.1;Ontology_term=GO:0006979,GO:0030091,GO:0008113,GO:0033744;gbkey=CDS;gene=msrA;go_function=peptide-methionine (S)-S-oxide reductase activity|0008113||IEA,L-methionine:thioredoxin-disulfide S-oxidoreductase activity|0033744||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089456.1;locus_tag=LLC55_RS19285;product=peptide-methionine (S)-S-oxide reductase MsrA;protein_id=WP_069959982.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4107989 4108567 . - . ID=gene-LLC55_RS19290;Name=LLC55_RS19290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19290;old_locus_tag=LLC55_19310 NZ_CP086200.1 Protein Homology CDS 4107989 4108567 . - 0 ID=cds-WP_011260092.1;Parent=gene-LLC55_RS19290;Dbxref=Genbank:WP_011260092.1;Name=WP_011260092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156974.1;locus_tag=LLC55_RS19290;product=glutamine amidotransferase;protein_id=WP_011260092.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4108779 4109912 . - . ID=gene-LLC55_RS19295;Name=LLC55_RS19295;end_range=4109912,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19295;old_locus_tag=LLC55_19315;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4108779 4109912 . - 0 ID=cds-LLC55_RS19295;Parent=gene-LLC55_RS19295;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4109912,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS19295;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4110001 4110966 . + . ID=gene-LLC55_RS19300;Name=LLC55_RS19300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19300;old_locus_tag=LLC55_19320 NZ_CP086200.1 Protein Homology CDS 4110001 4110966 . + 0 ID=cds-WP_109181970.1;Parent=gene-LLC55_RS19300;Dbxref=Genbank:WP_109181970.1;Name=WP_109181970.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS19300;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181970.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4110973 4111164 . - . ID=gene-LLC55_RS19305;Name=LLC55_RS19305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19305;old_locus_tag=LLC55_19325;partial=true;pseudo=true;start_range=.,4110973 NZ_CP086200.1 Protein Homology CDS 4110973 4111164 . - 0 ID=cds-LLC55_RS19305;Parent=gene-LLC55_RS19305;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS19305;partial=true;product=transposase;pseudo=true;start_range=.,4110973;transl_table=11 NZ_CP086200.1 RefSeq gene 4111630 4112598 . - . ID=gene-LLC55_RS19310;Name=LLC55_RS19310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19310;old_locus_tag=LLC55_19330 NZ_CP086200.1 Protein Homology CDS 4111630 4112598 . - 0 ID=cds-WP_012444266.1;Parent=gene-LLC55_RS19310;Dbxref=Genbank:WP_012444266.1;Name=WP_012444266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089458.1;locus_tag=LLC55_RS19310;product=transaldolase;protein_id=WP_012444266.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4112661 4113092 . - . ID=gene-LLC55_RS19315;Name=rnk;gbkey=Gene;gene=rnk;gene_biotype=protein_coding;locus_tag=LLC55_RS19315;old_locus_tag=LLC55_19335 NZ_CP086200.1 Protein Homology CDS 4112661 4113092 . - 0 ID=cds-WP_011409284.1;Parent=gene-LLC55_RS19315;Dbxref=Genbank:WP_011409284.1;Name=WP_011409284.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=rnk;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381561.1;locus_tag=LLC55_RS19315;product=nucleoside diphosphate kinase regulator;protein_id=WP_011409284.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4113519 4114460 . - . ID=gene-LLC55_RS19320;Name=LLC55_RS19320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19320;old_locus_tag=LLC55_19340 NZ_CP086200.1 Protein Homology CDS 4113519 4114460 . - 0 ID=cds-WP_012444268.1;Parent=gene-LLC55_RS19320;Dbxref=Genbank:WP_012444268.1;Name=WP_012444268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811807.1;locus_tag=LLC55_RS19320;product=LysR substrate-binding domain-containing protein;protein_id=WP_012444268.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4114552 4116144 . - . ID=gene-LLC55_RS19325;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=LLC55_RS19325;old_locus_tag=LLC55_19345 NZ_CP086200.1 Protein Homology CDS 4114552 4116144 . - 0 ID=cds-WP_011409282.1;Parent=gene-LLC55_RS19325;Dbxref=Genbank:WP_011409282.1;Name=WP_011409282.1;Ontology_term=GO:0006805,GO:0009398,GO:0016668;gbkey=CDS;gene=ahpF;go_function=oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD(P) as acceptor|0016668||IEA;go_process=xenobiotic metabolic process|0006805||IEA,FMN biosynthetic process|0009398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488827.1;locus_tag=LLC55_RS19325;product=alkyl hydroperoxide reductase subunit F;protein_id=WP_011409282.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4116335 4116898 . - . ID=gene-LLC55_RS19330;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=LLC55_RS19330;old_locus_tag=LLC55_19350 NZ_CP086200.1 Protein Homology CDS 4116335 4116898 . - 0 ID=cds-WP_010381556.1;Parent=gene-LLC55_RS19330;Dbxref=Genbank:WP_010381556.1;Name=WP_010381556.1;Ontology_term=GO:0006979,GO:0102039;gbkey=CDS;gene=ahpC;go_function=NADH-dependent peroxiredoxin activity|0102039||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114658.1;locus_tag=LLC55_RS19330;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_010381556.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4117100 4117945 . + . ID=gene-LLC55_RS19335;Name=prmC;gbkey=Gene;gene=prmC;gene_biotype=protein_coding;locus_tag=LLC55_RS19335;old_locus_tag=LLC55_19355 NZ_CP086200.1 Protein Homology CDS 4117100 4117945 . + 0 ID=cds-WP_011260084.1;Parent=gene-LLC55_RS19335;Dbxref=Genbank:WP_011260084.1;Name=WP_011260084.1;Ontology_term=GO:0006412,GO:0018364,GO:0008757;gbkey=CDS;gene=prmC;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=translation|0006412||IEA,peptidyl-glutamine methylation|0018364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304655.1;locus_tag=LLC55_RS19335;product=peptide chain release factor N(5)-glutamine methyltransferase;protein_id=WP_011260084.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4118004 4118960 . - . ID=gene-LLC55_RS19340;Name=LLC55_RS19340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19340;old_locus_tag=LLC55_19360 NZ_CP086200.1 Protein Homology CDS 4118004 4118960 . - 0 ID=cds-WP_042465726.1;Parent=gene-LLC55_RS19340;Dbxref=Genbank:WP_042465726.1;Name=WP_042465726.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182719.1;locus_tag=LLC55_RS19340;product=IS30-like element IS1112b family transposase;protein_id=WP_042465726.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4118954 4119313 . + . ID=gene-LLC55_RS19345;Name=LLC55_RS19345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19345;old_locus_tag=LLC55_19365 NZ_CP086200.1 GeneMarkS-2+ CDS 4118954 4119313 . + 0 ID=cds-WP_075243232.1;Parent=gene-LLC55_RS19345;Dbxref=Genbank:WP_075243232.1;Name=WP_075243232.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS19345;product=hypothetical protein;protein_id=WP_075243232.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4119310 4119639 . + . ID=gene-LLC55_RS19350;Name=LLC55_RS19350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19350;old_locus_tag=LLC55_19370 NZ_CP086200.1 Protein Homology CDS 4119310 4119639 . + 0 ID=cds-WP_228329630.1;Parent=gene-LLC55_RS19350;Dbxref=Genbank:WP_228329630.1;Name=WP_228329630.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260083.1;locus_tag=LLC55_RS19350;product=hypothetical protein;protein_id=WP_228329630.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4119683 4120009 . + . ID=gene-LLC55_RS19355;Name=LLC55_RS19355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19355;old_locus_tag=LLC55_19375 NZ_CP086200.1 Protein Homology CDS 4119683 4120009 . + 0 ID=cds-WP_011260082.1;Parent=gene-LLC55_RS19355;Dbxref=Genbank:WP_011260082.1;Name=WP_011260082.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260082.1;locus_tag=LLC55_RS19355;product=hypothetical protein;protein_id=WP_011260082.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4120020 4120298 . - . ID=gene-LLC55_RS19360;Name=LLC55_RS19360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19360;old_locus_tag=LLC55_19380 NZ_CP086200.1 GeneMarkS-2+ CDS 4120020 4120298 . - 0 ID=cds-WP_228329631.1;Parent=gene-LLC55_RS19360;Dbxref=Genbank:WP_228329631.1;Name=WP_228329631.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS19360;product=hypothetical protein;protein_id=WP_228329631.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4120511 4120816 . - . ID=gene-LLC55_RS19365;Name=LLC55_RS19365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19365;old_locus_tag=LLC55_19385 NZ_CP086200.1 Protein Homology CDS 4120511 4120816 . - 0 ID=cds-WP_011409278.1;Parent=gene-LLC55_RS19365;Dbxref=Genbank:WP_011409278.1;Name=WP_011409278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304656.1;locus_tag=LLC55_RS19365;product=hypothetical protein;protein_id=WP_011409278.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4120905 4121846 . + . ID=gene-LLC55_RS19370;Name=pip;gbkey=Gene;gene=pip;gene_biotype=protein_coding;locus_tag=LLC55_RS19370;old_locus_tag=LLC55_19390 NZ_CP086200.1 Protein Homology CDS 4120905 4121846 . + 0 ID=cds-WP_011260081.1;Parent=gene-LLC55_RS19370;Dbxref=Genbank:WP_011260081.1;Name=WP_011260081.1;Ontology_term=GO:0030163,GO:0004177;gbkey=CDS;gene=pip;go_function=aminopeptidase activity|0004177||IEA;go_process=protein catabolic process|0030163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811802.1;locus_tag=LLC55_RS19370;product=prolyl aminopeptidase;protein_id=WP_011260081.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4122047 4122844 . - . ID=gene-LLC55_RS19375;Name=LLC55_RS19375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19375;old_locus_tag=LLC55_19395 NZ_CP086200.1 Protein Homology CDS 4122047 4122844 . - 0 ID=cds-WP_011260080.1;Parent=gene-LLC55_RS19375;Dbxref=Genbank:WP_011260080.1;Name=WP_011260080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260080.1;locus_tag=LLC55_RS19375;product=N-formylglutamate amidohydrolase;protein_id=WP_011260080.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4122825 4123376 . - . ID=gene-LLC55_RS19380;Name=LLC55_RS19380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19380;old_locus_tag=LLC55_19400 NZ_CP086200.1 Protein Homology CDS 4122825 4123376 . - 0 ID=cds-WP_011260079.1;Parent=gene-LLC55_RS19380;Dbxref=Genbank:WP_011260079.1;Name=WP_011260079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472542.1;locus_tag=LLC55_RS19380;product=NUDIX hydrolase;protein_id=WP_011260079.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4123373 4124359 . - . ID=gene-LLC55_RS19385;Name=LLC55_RS19385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19385;old_locus_tag=LLC55_19405 NZ_CP086200.1 Protein Homology CDS 4123373 4124359 . - 0 ID=cds-WP_011260078.1;Parent=gene-LLC55_RS19385;Dbxref=Genbank:WP_011260078.1;Name=WP_011260078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156966.1;locus_tag=LLC55_RS19385;product=exodeoxyribonuclease IX;protein_id=WP_011260078.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4124356 4124931 . - . ID=gene-LLC55_RS19390;Name=LLC55_RS19390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19390;old_locus_tag=LLC55_19410 NZ_CP086200.1 Protein Homology CDS 4124356 4124931 . - 0 ID=cds-WP_011409277.1;Parent=gene-LLC55_RS19390;Dbxref=Genbank:WP_011409277.1;Name=WP_011409277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915539.1;locus_tag=LLC55_RS19390;product=nitroreductase;protein_id=WP_011409277.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4125299 4127638 . + . ID=gene-LLC55_RS19395;Name=LLC55_RS19395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19395;old_locus_tag=LLC55_19415 NZ_CP086200.1 Protein Homology CDS 4125299 4127638 . + 0 ID=cds-WP_011260076.1;Parent=gene-LLC55_RS19395;Dbxref=Genbank:WP_011260076.1;Name=WP_011260076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915543.1;locus_tag=LLC55_RS19395;product=DUF1631 domain-containing protein;protein_id=WP_011260076.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4127784 4128881 . + . ID=gene-LLC55_RS19400;Name=LLC55_RS19400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19400;old_locus_tag=LLC55_19420 NZ_CP086200.1 Protein Homology CDS 4127784 4128881 . + 0 ID=cds-WP_011409276.1;Parent=gene-LLC55_RS19400;Dbxref=Genbank:WP_011409276.1;Name=WP_011409276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488800.1;locus_tag=LLC55_RS19400;product=NAD(P) transhydrogenase subunit alpha;protein_id=WP_011409276.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4129279 4129764 . - . ID=gene-LLC55_RS19405;Name=LLC55_RS19405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19405;old_locus_tag=LLC55_19425 NZ_CP086200.1 Protein Homology CDS 4129279 4129764 . - 0 ID=cds-WP_027703741.1;Parent=gene-LLC55_RS19405;Dbxref=Genbank:WP_027703741.1;Name=WP_027703741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156962.1;locus_tag=LLC55_RS19405;product=DUF3106 domain-containing protein;protein_id=WP_027703741.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4129770 4130120 . - . ID=gene-LLC55_RS19410;Name=LLC55_RS19410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19410;old_locus_tag=LLC55_19430 NZ_CP086200.1 Protein Homology CDS 4129770 4130120 . - 0 ID=cds-WP_011260071.1;Parent=gene-LLC55_RS19410;Dbxref=Genbank:WP_011260071.1;Name=WP_011260071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578132.1;locus_tag=LLC55_RS19410;product=hypothetical protein;protein_id=WP_011260071.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4130117 4130698 . - . ID=gene-LLC55_RS19415;Name=LLC55_RS19415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19415;old_locus_tag=LLC55_19435 NZ_CP086200.1 Protein Homology CDS 4130117 4130698 . - 0 ID=cds-WP_069965062.1;Parent=gene-LLC55_RS19415;Dbxref=Genbank:WP_069965062.1;Name=WP_069965062.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156960.1;locus_tag=LLC55_RS19415;product=RNA polymerase sigma factor;protein_id=WP_069965062.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4130822 4131127 . + . ID=gene-LLC55_RS19420;Name=LLC55_RS19420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19420;old_locus_tag=LLC55_19440 NZ_CP086200.1 Protein Homology CDS 4130822 4131127 . + 0 ID=cds-WP_011409274.1;Parent=gene-LLC55_RS19420;Dbxref=Genbank:WP_011409274.1;Name=WP_011409274.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488789.1;locus_tag=LLC55_RS19420;product=NAD(P) transhydrogenase subunit alpha;protein_id=WP_011409274.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4131124 4132623 . + . ID=gene-LLC55_RS19425;Name=LLC55_RS19425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19425;old_locus_tag=LLC55_19445 NZ_CP086200.1 Protein Homology CDS 4131124 4132623 . + 0 ID=cds-WP_069964594.1;Parent=gene-LLC55_RS19425;Dbxref=Genbank:WP_069964594.1;Name=WP_069964594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260068.1;locus_tag=LLC55_RS19425;product=NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta;protein_id=WP_069964594.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4132537 4133335 . - . ID=gene-LLC55_RS19430;Name=LLC55_RS19430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19430;old_locus_tag=LLC55_19450 NZ_CP086200.1 Protein Homology CDS 4133064 4133335 . - 0 ID=cds-WP_094187731.1-2;Parent=gene-LLC55_RS19430;Dbxref=Genbank:WP_094187731.1;Name=WP_094187731.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS19430;product=IS5 family transposase;protein_id=WP_094187731.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4132537 4133065 . - 1 ID=cds-WP_094187731.1-2;Parent=gene-LLC55_RS19430;Dbxref=Genbank:WP_094187731.1;Name=WP_094187731.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS19430;product=IS5 family transposase;protein_id=WP_094187731.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4133539 4133763 . + . ID=gene-LLC55_RS19435;Name=LLC55_RS19435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19435;old_locus_tag=LLC55_19455 NZ_CP086200.1 Protein Homology CDS 4133539 4133763 . + 0 ID=cds-WP_027703428.1;Parent=gene-LLC55_RS19435;Dbxref=Genbank:WP_027703428.1;Name=WP_027703428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304579.1;locus_tag=LLC55_RS19435;product=hypothetical protein;protein_id=WP_027703428.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4133878 4134297 . - . ID=gene-LLC55_RS19440;Name=LLC55_RS19440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19440;old_locus_tag=LLC55_19460 NZ_CP086200.1 Protein Homology CDS 4133878 4134297 . - 0 ID=cds-WP_011409271.1;Parent=gene-LLC55_RS19440;Dbxref=Genbank:WP_011409271.1;Name=WP_011409271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156959.1;locus_tag=LLC55_RS19440;product=hypothetical protein;protein_id=WP_011409271.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4134484 4135038 . + . ID=gene-LLC55_RS19445;Name=sufT;gbkey=Gene;gene=sufT;gene_biotype=protein_coding;locus_tag=LLC55_RS19445;old_locus_tag=LLC55_19465 NZ_CP086200.1 Protein Homology CDS 4134484 4135038 . + 0 ID=cds-WP_011260066.1;Parent=gene-LLC55_RS19445;Dbxref=Genbank:WP_011260066.1;Name=WP_011260066.1;Ontology_term=GO:0016226,GO:0003674;gbkey=CDS;gene=sufT;go_function=molecular_function|0003674||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488784.1;locus_tag=LLC55_RS19445;product=putative Fe-S cluster assembly protein SufT;protein_id=WP_011260066.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4135103 4136188 . + . ID=gene-LLC55_RS19450;Name=LLC55_RS19450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19450;old_locus_tag=LLC55_19470 NZ_CP086200.1 Protein Homology CDS 4135103 4136188 . + 0 ID=cds-WP_011260065.1;Parent=gene-LLC55_RS19450;Dbxref=Genbank:WP_011260065.1;Name=WP_011260065.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036086.1;locus_tag=LLC55_RS19450;product=branched-chain amino acid aminotransferase;protein_id=WP_011260065.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4136505 4137659 . + . ID=gene-LLC55_RS19455;Name=LLC55_RS19455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19455;old_locus_tag=LLC55_19475;partial=true;pseudo=true;start_range=.,4136505 NZ_CP086200.1 Protein Homology CDS 4136505 4137659 . + 0 ID=cds-LLC55_RS19455;Parent=gene-LLC55_RS19455;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972507.1;locus_tag=LLC55_RS19455;partial=true;product=S8 family serine peptidase;pseudo=true;start_range=.,4136505;transl_table=11 NZ_CP086200.1 RefSeq gene 4137867 4138340 . - . ID=gene-LLC55_RS19460;Name=ybaK;gbkey=Gene;gene=ybaK;gene_biotype=protein_coding;locus_tag=LLC55_RS19460;old_locus_tag=LLC55_19480 NZ_CP086200.1 Protein Homology CDS 4137867 4138340 . - 0 ID=cds-WP_011409268.1;Parent=gene-LLC55_RS19460;Dbxref=Genbank:WP_011409268.1;Name=WP_011409268.1;Ontology_term=GO:0043039,GO:0002161;gbkey=CDS;gene=ybaK;go_function=aminoacyl-tRNA editing activity|0002161||IEA;go_process=tRNA aminoacylation|0043039||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988832.1;locus_tag=LLC55_RS19460;product=Cys-tRNA(Pro) deacylase;protein_id=WP_011409268.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4138345 4138830 . - . ID=gene-LLC55_RS19465;Name=LLC55_RS19465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19465;old_locus_tag=LLC55_19485 NZ_CP086200.1 Protein Homology CDS 4138345 4138830 . - 0 ID=cds-WP_011409267.1;Parent=gene-LLC55_RS19465;Dbxref=Genbank:WP_011409267.1;Name=WP_011409267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488754.1;locus_tag=LLC55_RS19465;product=asparaginase domain-containing protein;protein_id=WP_011409267.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4139344 4140564 . + . ID=gene-LLC55_RS19470;Name=LLC55_RS19470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19470;old_locus_tag=LLC55_19490 NZ_CP086200.1 Protein Homology CDS 4139344 4140564 . + 0 ID=cds-WP_011409266.1;Parent=gene-LLC55_RS19470;Dbxref=Genbank:WP_011409266.1;Name=WP_011409266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158669.1;locus_tag=LLC55_RS19470;product=xylanase;protein_id=WP_011409266.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4140569 4140643 . - . ID=gene-LLC55_RS19475;Name=LLC55_RS19475;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS19475;old_locus_tag=LLC55_19495 NZ_CP086200.1 cmsearch ncRNA 4140569 4140643 . - . ID=rna-LLC55_RS19475;Parent=gene-LLC55_RS19475;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS19475;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4140569 4140643 . - . ID=exon-LLC55_RS19475-1;Parent=rna-LLC55_RS19475;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS19475;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4140773 4141120 . - . ID=gene-LLC55_RS19480;Name=LLC55_RS19480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19480;old_locus_tag=LLC55_19500 NZ_CP086200.1 Protein Homology CDS 4140773 4141120 . - 0 ID=cds-WP_041182600.1;Parent=gene-LLC55_RS19480;Dbxref=Genbank:WP_041182600.1;Name=WP_041182600.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502128.1;locus_tag=LLC55_RS19480;product=DUF2069 domain-containing protein;protein_id=WP_041182600.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4141117 4141713 . - . ID=gene-LLC55_RS19485;Name=wrbA;gbkey=Gene;gene=wrbA;gene_biotype=protein_coding;locus_tag=LLC55_RS19485;old_locus_tag=LLC55_19505 NZ_CP086200.1 Protein Homology CDS 4141117 4141713 . - 0 ID=cds-WP_005925984.1;Parent=gene-LLC55_RS19485;Dbxref=Genbank:WP_005925984.1;Name=WP_005925984.1;Ontology_term=GO:0003955,GO:0010181;gbkey=CDS;gene=wrbA;go_function=NAD(P)H dehydrogenase (quinone) activity|0003955||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367335.1;locus_tag=LLC55_RS19485;product=NAD(P)H:quinone oxidoreductase;protein_id=WP_005925984.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4141825 4143102 . + . ID=gene-LLC55_RS19490;Name=LLC55_RS19490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19490;old_locus_tag=LLC55_19510 NZ_CP086200.1 Protein Homology CDS 4141825 4143102 . + 0 ID=cds-WP_075242243.1;Parent=gene-LLC55_RS19490;Dbxref=Genbank:WP_075242243.1;Name=WP_075242243.1;Ontology_term=GO:0008150,GO:0003674,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036096.1;locus_tag=LLC55_RS19490;product=YihY family inner membrane protein;protein_id=WP_075242243.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4143099 4143701 . + . ID=gene-LLC55_RS19495;Name=LLC55_RS19495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19495;old_locus_tag=LLC55_19515 NZ_CP086200.1 Protein Homology CDS 4143099 4143701 . + 0 ID=cds-WP_011260055.1;Parent=gene-LLC55_RS19495;Dbxref=Genbank:WP_011260055.1;Name=WP_011260055.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346527.1;locus_tag=LLC55_RS19495;product=TlpA disulfide reductase family protein;protein_id=WP_011260055.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4143701 4143967 . + . ID=gene-LLC55_RS19500;Name=LLC55_RS19500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19500;old_locus_tag=LLC55_19520 NZ_CP086200.1 Protein Homology CDS 4143701 4143967 . + 0 ID=cds-WP_011409264.1;Parent=gene-LLC55_RS19500;Dbxref=Genbank:WP_011409264.1;Name=WP_011409264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112879.1;locus_tag=LLC55_RS19500;product=acylphosphatase;protein_id=WP_011409264.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4144053 4145282 . + . ID=gene-LLC55_RS19505;Name=LLC55_RS19505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19505;old_locus_tag=LLC55_19525 NZ_CP086200.1 Protein Homology CDS 4144053 4145282 . + 0 ID=cds-WP_011260053.1;Parent=gene-LLC55_RS19505;Dbxref=Genbank:WP_011260053.1;Name=WP_011260053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925993.1;locus_tag=LLC55_RS19505;product=hypothetical protein;protein_id=WP_011260053.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4145264 4146046 . - . ID=gene-LLC55_RS19510;Name=ppk2;gbkey=Gene;gene=ppk2;gene_biotype=protein_coding;locus_tag=LLC55_RS19510;old_locus_tag=LLC55_19530 NZ_CP086200.1 Protein Homology CDS 4145264 4146046 . - 0 ID=cds-WP_011260052.1;Parent=gene-LLC55_RS19510;Dbxref=Genbank:WP_011260052.1;Name=WP_011260052.1;Ontology_term=GO:0006793,GO:0008976,GO:0005575;gbkey=CDS;gene=ppk2;go_component=cellular_component|0005575||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=phosphorus metabolic process|0006793||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965859.1;locus_tag=LLC55_RS19510;product=polyphosphate kinase 2;protein_id=WP_011260052.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4146079 4146597 . - . ID=gene-LLC55_RS19515;Name=moaB;gbkey=Gene;gene=moaB;gene_biotype=protein_coding;locus_tag=LLC55_RS19515;old_locus_tag=LLC55_19535 NZ_CP086200.1 Protein Homology CDS 4146079 4146597 . - 0 ID=cds-WP_011260051.1;Parent=gene-LLC55_RS19515;Dbxref=Genbank:WP_011260051.1;Name=WP_011260051.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=moaB;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346528.1;locus_tag=LLC55_RS19515;product=molybdenum cofactor biosynthesis protein B;protein_id=WP_011260051.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4147063 4148769 . - . ID=gene-LLC55_RS19520;Name=LLC55_RS19520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19520;old_locus_tag=LLC55_19540 NZ_CP086200.1 Protein Homology CDS 4147063 4148769 . - 0 ID=cds-WP_011260050.1;Parent=gene-LLC55_RS19520;Dbxref=Genbank:WP_011260050.1;Name=WP_011260050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118468.1;locus_tag=LLC55_RS19520;product=tetratricopeptide repeat protein;protein_id=WP_011260050.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4148766 4149851 . - . ID=gene-LLC55_RS19525;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=LLC55_RS19525;old_locus_tag=LLC55_19545 NZ_CP086200.1 Protein Homology CDS 4148766 4149851 . - 0 ID=cds-WP_011260049.1;Parent=gene-LLC55_RS19525;Dbxref=Genbank:WP_011260049.1;Name=WP_011260049.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfA;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300176.1;locus_tag=LLC55_RS19525;product=peptide chain release factor 1;protein_id=WP_011260049.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4149829 4151127 . - . ID=gene-LLC55_RS19530;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=LLC55_RS19530;old_locus_tag=LLC55_19550 NZ_CP086200.1 Protein Homology CDS 4149829 4151127 . - 0 ID=cds-WP_011409263.1;Parent=gene-LLC55_RS19530;Dbxref=Genbank:WP_011409263.1;Name=WP_011409263.1;Ontology_term=GO:0006779,GO:0008883,GO:0005737;gbkey=CDS;gene=hemA;go_component=cytoplasm|0005737||IEA;go_function=glutamyl-tRNA reductase activity|0008883||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450610.1;locus_tag=LLC55_RS19530;product=glutamyl-tRNA reductase;protein_id=WP_011409263.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4151193 4152881 . + . ID=gene-LLC55_RS19535;Name=LLC55_RS19535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19535;old_locus_tag=LLC55_19555 NZ_CP086200.1 Protein Homology CDS 4151193 4152881 . + 0 ID=cds-WP_011409262.1;Parent=gene-LLC55_RS19535;Dbxref=Genbank:WP_011409262.1;Name=WP_011409262.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972526.1;locus_tag=LLC55_RS19535;product=tetratricopeptide repeat protein;protein_id=WP_011409262.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4152878 4153531 . + . ID=gene-LLC55_RS19540;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=LLC55_RS19540;old_locus_tag=LLC55_19560 NZ_CP086200.1 Protein Homology CDS 4152878 4153531 . + 0 ID=cds-WP_011260046.1;Parent=gene-LLC55_RS19540;Dbxref=Genbank:WP_011260046.1;Name=WP_011260046.1;Ontology_term=GO:0009306,GO:0008320;gbkey=CDS;gene=lolB;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172004.1;locus_tag=LLC55_RS19540;product=lipoprotein insertase outer membrane protein LolB;protein_id=WP_011260046.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4153513 4154400 . + . ID=gene-LLC55_RS19545;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=LLC55_RS19545;old_locus_tag=LLC55_19565 NZ_CP086200.1 Protein Homology CDS 4153513 4154400 . + 0 ID=cds-WP_011260045.1;Parent=gene-LLC55_RS19545;Dbxref=Genbank:WP_011260045.1;Name=WP_011260045.1;Ontology_term=GO:0016114,GO:0050515;gbkey=CDS;gene=ispE;go_function=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity|0050515||IEA;go_process=terpenoid biosynthetic process|0016114||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346534.1;locus_tag=LLC55_RS19545;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=WP_011260045.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4154404 4154480 . + . ID=gene-LLC55_RS19550;Name=LLC55_RS19550;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS19550;old_locus_tag=LLC55_19570 NZ_CP086200.1 tRNAscan-SE tRNA 4154404 4154480 . + . ID=rna-LLC55_RS19550;Parent=gene-LLC55_RS19550;anticodon=(pos:4154438..4154440);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19550;product=tRNA-Gln NZ_CP086200.1 tRNAscan-SE exon 4154404 4154480 . + . ID=exon-LLC55_RS19550-1;Parent=rna-LLC55_RS19550;anticodon=(pos:4154438..4154440);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19550;product=tRNA-Gln NZ_CP086200.1 RefSeq gene 4154608 4155567 . + . ID=gene-LLC55_RS19555;Name=LLC55_RS19555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19555;old_locus_tag=LLC55_19575 NZ_CP086200.1 Protein Homology CDS 4154608 4155567 . + 0 ID=cds-WP_011409260.1;Parent=gene-LLC55_RS19555;Dbxref=Genbank:WP_011409260.1;Name=WP_011409260.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF003428.0;locus_tag=LLC55_RS19555;product=ribose-phosphate diphosphokinase;protein_id=WP_011409260.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4155677 4156312 . + . ID=gene-LLC55_RS19560;Name=LLC55_RS19560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19560;old_locus_tag=LLC55_19580 NZ_CP086200.1 Protein Homology CDS 4155677 4156312 . + 0 ID=cds-WP_011260043.1;Parent=gene-LLC55_RS19560;Dbxref=Genbank:WP_011260043.1;Name=WP_011260043.1;Ontology_term=GO:0006412,GO:0003735,GO:0008097;gbkey=CDS;go_function=structural constituent of ribosome|0003735||IEA,5S rRNA binding|0008097||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486759.1;locus_tag=LLC55_RS19560;product=50S ribosomal protein L25/general stress protein Ctc;protein_id=WP_011260043.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4156364 4156948 . + . ID=gene-LLC55_RS19565;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=LLC55_RS19565;old_locus_tag=LLC55_19585 NZ_CP086200.1 Protein Homology CDS 4156364 4156948 . + 0 ID=cds-WP_044756498.1;Parent=gene-LLC55_RS19565;Dbxref=Genbank:WP_044756498.1;Name=WP_044756498.1;Ontology_term=GO:0006412,GO:0004045;gbkey=CDS;gene=pth;go_function=aminoacyl-tRNA hydrolase activity|0004045||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968854.1;locus_tag=LLC55_RS19565;product=aminoacyl-tRNA hydrolase;protein_id=WP_044756498.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4157023 4158114 . + . ID=gene-LLC55_RS19570;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=LLC55_RS19570;old_locus_tag=LLC55_19590 NZ_CP086200.1 Protein Homology CDS 4157023 4158114 . + 0 ID=cds-WP_011260041.1;Parent=gene-LLC55_RS19570;Dbxref=Genbank:WP_011260041.1;Name=WP_011260041.1;Ontology_term=GO:0005525;gbkey=CDS;gene=ychF;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000506572.1;locus_tag=LLC55_RS19570;product=redox-regulated ATPase YchF;protein_id=WP_011260041.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4158268 4158353 . + . ID=gene-LLC55_RS19575;Name=LLC55_RS19575;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS19575;old_locus_tag=LLC55_19595 NZ_CP086200.1 tRNAscan-SE tRNA 4158268 4158353 . + . ID=rna-LLC55_RS19575;Parent=gene-LLC55_RS19575;anticodon=(pos:4158302..4158304);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19575;product=tRNA-Tyr NZ_CP086200.1 tRNAscan-SE exon 4158268 4158353 . + . ID=exon-LLC55_RS19575-1;Parent=rna-LLC55_RS19575;anticodon=(pos:4158302..4158304);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19575;product=tRNA-Tyr NZ_CP086200.1 RefSeq gene 4158383 4158456 . + . ID=gene-LLC55_RS19580;Name=LLC55_RS19580;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS19580;old_locus_tag=LLC55_19600 NZ_CP086200.1 tRNAscan-SE tRNA 4158383 4158456 . + . ID=rna-LLC55_RS19580;Parent=gene-LLC55_RS19580;anticodon=(pos:4158415..4158417);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19580;product=tRNA-Gly NZ_CP086200.1 tRNAscan-SE exon 4158383 4158456 . + . ID=exon-LLC55_RS19580-1;Parent=rna-LLC55_RS19580;anticodon=(pos:4158415..4158417);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19580;product=tRNA-Gly NZ_CP086200.1 RefSeq gene 4158491 4158566 . + . ID=gene-LLC55_RS19585;Name=LLC55_RS19585;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS19585;old_locus_tag=LLC55_19605 NZ_CP086200.1 tRNAscan-SE tRNA 4158491 4158566 . + . ID=rna-LLC55_RS19585;Parent=gene-LLC55_RS19585;anticodon=(pos:4158524..4158526);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19585;product=tRNA-Thr NZ_CP086200.1 tRNAscan-SE exon 4158491 4158566 . + . ID=exon-LLC55_RS19585-1;Parent=rna-LLC55_RS19585;anticodon=(pos:4158524..4158526);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19585;product=tRNA-Thr NZ_CP086200.1 RefSeq gene 4158613 4159803 . + . ID=gene-LLC55_RS19590;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=LLC55_RS19590;old_locus_tag=LLC55_19610 NZ_CP086200.1 Protein Homology CDS 4158613 4159803 . + 0 ID=cds-WP_011260030.1;Parent=gene-LLC55_RS19590;Dbxref=Genbank:WP_011260030.1;Name=WP_011260030.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486726.1;locus_tag=LLC55_RS19590;product=elongation factor Tu;protein_id=WP_011260030.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4159909 4159984 . + . ID=gene-LLC55_RS19595;Name=LLC55_RS19595;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS19595;old_locus_tag=LLC55_19615 NZ_CP086200.1 tRNAscan-SE tRNA 4159909 4159984 . + . ID=rna-LLC55_RS19595;Parent=gene-LLC55_RS19595;anticodon=(pos:4159942..4159944);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19595;product=tRNA-Trp NZ_CP086200.1 tRNAscan-SE exon 4159909 4159984 . + . ID=exon-LLC55_RS19595-1;Parent=rna-LLC55_RS19595;anticodon=(pos:4159942..4159944);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS19595;product=tRNA-Trp NZ_CP086200.1 RefSeq gene 4160034 4160444 . + . ID=gene-LLC55_RS19600;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=LLC55_RS19600;old_locus_tag=LLC55_19620 NZ_CP086200.1 Protein Homology CDS 4160034 4160444 . + 0 ID=cds-WP_011260040.1;Parent=gene-LLC55_RS19600;Dbxref=Genbank:WP_011260040.1;Name=WP_011260040.1;gbkey=CDS;gene=secE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993330.1;locus_tag=LLC55_RS19600;product=preprotein translocase subunit SecE;protein_id=WP_011260040.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4160458 4161015 . + . ID=gene-LLC55_RS19605;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=LLC55_RS19605;old_locus_tag=LLC55_19625 NZ_CP086200.1 Protein Homology CDS 4160458 4161015 . + 0 ID=cds-WP_011409259.1;Parent=gene-LLC55_RS19605;Dbxref=Genbank:WP_011409259.1;Name=WP_011409259.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusG;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162956.1;locus_tag=LLC55_RS19605;product=transcription termination/antitermination protein NusG;protein_id=WP_011409259.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4161212 4161640 . + . ID=gene-LLC55_RS19610;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=LLC55_RS19610;old_locus_tag=LLC55_19630 NZ_CP086200.1 Protein Homology CDS 4161212 4161640 . + 0 ID=cds-WP_011260038.1;Parent=gene-LLC55_RS19610;Dbxref=Genbank:WP_011260038.1;Name=WP_011260038.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplK;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993334.1;locus_tag=LLC55_RS19610;product=50S ribosomal protein L11;protein_id=WP_011260038.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4161644 4162342 . + . ID=gene-LLC55_RS19615;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=LLC55_RS19615;old_locus_tag=LLC55_19635 NZ_CP086200.1 Protein Homology CDS 4161644 4162342 . + 0 ID=cds-WP_011409258.1;Parent=gene-LLC55_RS19615;Dbxref=Genbank:WP_011409258.1;Name=WP_011409258.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplA;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341341.1;locus_tag=LLC55_RS19615;product=50S ribosomal protein L1;protein_id=WP_011409258.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4162888 4163421 . + . ID=gene-LLC55_RS19620;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=LLC55_RS19620;old_locus_tag=LLC55_19640 NZ_CP086200.1 Protein Homology CDS 4162888 4163421 . + 0 ID=cds-WP_014502152.1;Parent=gene-LLC55_RS19620;Dbxref=Genbank:WP_014502152.1;Name=WP_014502152.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036116.1;locus_tag=LLC55_RS19620;product=50S ribosomal protein L10;protein_id=WP_014502152.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4163476 4163841 . + . ID=gene-LLC55_RS19625;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=LLC55_RS19625;old_locus_tag=LLC55_19645 NZ_CP086200.1 Protein Homology CDS 4163476 4163841 . + 0 ID=cds-WP_053502914.1;Parent=gene-LLC55_RS19625;Dbxref=Genbank:WP_053502914.1;Name=WP_053502914.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplL;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574194.1;locus_tag=LLC55_RS19625;product=50S ribosomal protein L7/L12;protein_id=WP_053502914.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4164154 4168305 . + . ID=gene-LLC55_RS19630;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=LLC55_RS19630;old_locus_tag=LLC55_19650 NZ_CP086200.1 Protein Homology CDS 4164154 4168305 . + 0 ID=cds-WP_011260034.1;Parent=gene-LLC55_RS19630;Dbxref=Genbank:WP_011260034.1;Name=WP_011260034.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoB;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930752.1;locus_tag=LLC55_RS19630;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_011260034.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4168456 4172673 . + . ID=gene-LLC55_RS19635;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=LLC55_RS19635;old_locus_tag=LLC55_19655 NZ_CP086200.1 Protein Homology CDS 4168456 4172673 . + 0 ID=cds-WP_011260033.1;Parent=gene-LLC55_RS19635;Dbxref=Genbank:WP_011260033.1;Name=WP_011260033.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoC;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036119.1;locus_tag=LLC55_RS19635;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_011260033.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4172892 4173266 . + . ID=gene-LLC55_RS19640;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=LLC55_RS19640;old_locus_tag=LLC55_19660 NZ_CP086200.1 Protein Homology CDS 4172892 4173266 . + 0 ID=cds-WP_002811712.1;Parent=gene-LLC55_RS19640;Dbxref=Genbank:WP_002811712.1;Name=WP_002811712.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsL;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003469157.1;locus_tag=LLC55_RS19640;product=30S ribosomal protein S12;protein_id=WP_002811712.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4173279 4173746 . + . ID=gene-LLC55_RS19645;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=LLC55_RS19645;old_locus_tag=LLC55_19665 NZ_CP086200.1 Protein Homology CDS 4173279 4173746 . + 0 ID=cds-WP_011260032.1;Parent=gene-LLC55_RS19645;Dbxref=Genbank:WP_011260032.1;Name=WP_011260032.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsG;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450629.1;locus_tag=LLC55_RS19645;product=30S ribosomal protein S7;protein_id=WP_011260032.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4173885 4176002 . + . ID=gene-LLC55_RS19650;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=LLC55_RS19650;old_locus_tag=LLC55_19670 NZ_CP086200.1 Protein Homology CDS 4173885 4176002 . + 0 ID=cds-WP_011260031.1;Parent=gene-LLC55_RS19650;Dbxref=Genbank:WP_011260031.1;Name=WP_011260031.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156211.1;locus_tag=LLC55_RS19650;product=elongation factor G;protein_id=WP_011260031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4176052 4177242 . + . ID=gene-LLC55_RS19655;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=LLC55_RS19655;old_locus_tag=LLC55_19675 NZ_CP086200.1 Protein Homology CDS 4176052 4177242 . + 0 ID=cds-WP_011260030.1-2;Parent=gene-LLC55_RS19655;Dbxref=Genbank:WP_011260030.1;Name=WP_011260030.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486726.1;locus_tag=LLC55_RS19655;product=elongation factor Tu;protein_id=WP_011260030.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4177558 4178232 . - . ID=gene-LLC55_RS19660;Name=LLC55_RS19660;end_range=4178232,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19660;old_locus_tag=LLC55_19680;partial=true;pseudo=true;start_range=.,4177558 NZ_CP086200.1 Protein Homology CDS 4177558 4178232 . - 0 ID=cds-LLC55_RS19660;Parent=gene-LLC55_RS19660;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0004803;end_range=4178232,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=LLC55_RS19660;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,4177558;transl_table=11 NZ_CP086200.1 RefSeq gene 4179022 4179336 . + . ID=gene-LLC55_RS19665;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=LLC55_RS19665;old_locus_tag=LLC55_19685 NZ_CP086200.1 Protein Homology CDS 4179022 4179336 . + 0 ID=cds-WP_011409257.1;Parent=gene-LLC55_RS19665;Dbxref=Genbank:WP_011409257.1;Name=WP_011409257.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160477.1;locus_tag=LLC55_RS19665;product=30S ribosomal protein S10;protein_id=WP_011409257.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4179348 4179998 . + . ID=gene-LLC55_RS19670;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=LLC55_RS19670;old_locus_tag=LLC55_19690 NZ_CP086200.1 Protein Homology CDS 4179348 4179998 . + 0 ID=cds-WP_011260029.1;Parent=gene-LLC55_RS19670;Dbxref=Genbank:WP_011260029.1;Name=WP_011260029.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036123.1;locus_tag=LLC55_RS19670;product=50S ribosomal protein L3;protein_id=WP_011260029.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4180011 4180616 . + . ID=gene-LLC55_RS19675;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=LLC55_RS19675;old_locus_tag=LLC55_19695 NZ_CP086200.1 Protein Homology CDS 4180011 4180616 . + 0 ID=cds-WP_011260028.1;Parent=gene-LLC55_RS19675;Dbxref=Genbank:WP_011260028.1;Name=WP_011260028.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371054.1;locus_tag=LLC55_RS19675;product=50S ribosomal protein L4;protein_id=WP_011260028.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4180613 4180912 . + . ID=gene-LLC55_RS19680;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=LLC55_RS19680;old_locus_tag=LLC55_19700 NZ_CP086200.1 Protein Homology CDS 4180613 4180912 . + 0 ID=cds-WP_003486717.1;Parent=gene-LLC55_RS19680;Dbxref=Genbank:WP_003486717.1;Name=WP_003486717.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplW;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004145338.1;locus_tag=LLC55_RS19680;product=50S ribosomal protein L23;protein_id=WP_003486717.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4180923 4181750 . + . ID=gene-LLC55_RS19685;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=LLC55_RS19685;old_locus_tag=LLC55_19705 NZ_CP086200.1 Protein Homology CDS 4180923 4181750 . + 0 ID=cds-WP_011260027.1;Parent=gene-LLC55_RS19685;Dbxref=Genbank:WP_011260027.1;Name=WP_011260027.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplB;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009607340.1;locus_tag=LLC55_RS19685;product=50S ribosomal protein L2;protein_id=WP_011260027.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4181757 4182026 . + . ID=gene-LLC55_RS19690;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=LLC55_RS19690;old_locus_tag=LLC55_19710 NZ_CP086200.1 Protein Homology CDS 4181757 4182026 . + 0 ID=cds-WP_005993369.1;Parent=gene-LLC55_RS19690;Dbxref=Genbank:WP_005993369.1;Name=WP_005993369.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsS;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341594.1;locus_tag=LLC55_RS19690;product=30S ribosomal protein S19;protein_id=WP_005993369.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4182039 4182374 . + . ID=gene-LLC55_RS19695;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=LLC55_RS19695;old_locus_tag=LLC55_19715 NZ_CP086200.1 Protein Homology CDS 4182039 4182374 . + 0 ID=cds-WP_002811686.1;Parent=gene-LLC55_RS19695;Dbxref=Genbank:WP_002811686.1;Name=WP_002811686.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplV;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486710.1;locus_tag=LLC55_RS19695;product=50S ribosomal protein L22;protein_id=WP_002811686.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4182392 4183126 . + . ID=gene-LLC55_RS19700;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=LLC55_RS19700;old_locus_tag=LLC55_19720 NZ_CP086200.1 Protein Homology CDS 4182392 4183126 . + 0 ID=cds-WP_005993372.1;Parent=gene-LLC55_RS19700;Dbxref=Genbank:WP_005993372.1;Name=WP_005993372.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsC;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811684.1;locus_tag=LLC55_RS19700;product=30S ribosomal protein S3;protein_id=WP_005993372.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4183132 4183545 . + . ID=gene-LLC55_RS19705;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=LLC55_RS19705;old_locus_tag=LLC55_19725 NZ_CP086200.1 Protein Homology CDS 4183132 4183545 . + 0 ID=cds-WP_003486706.1;Parent=gene-LLC55_RS19705;Dbxref=Genbank:WP_003486706.1;Name=WP_003486706.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplP;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003479591.1;locus_tag=LLC55_RS19705;product=50S ribosomal protein L16;protein_id=WP_003486706.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4183545 4183730 . + . ID=gene-LLC55_RS19710;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=LLC55_RS19710;old_locus_tag=LLC55_19730 NZ_CP086200.1 Protein Homology CDS 4183545 4183730 . + 0 ID=cds-WP_003486703.1;Parent=gene-LLC55_RS19710;Dbxref=Genbank:WP_003486703.1;Name=WP_003486703.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmC;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050639.1;locus_tag=LLC55_RS19710;product=50S ribosomal protein L29;protein_id=WP_003486703.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4183742 4184011 . + . ID=gene-LLC55_RS19715;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=LLC55_RS19715;old_locus_tag=LLC55_19735 NZ_CP086200.1 Protein Homology CDS 4183742 4184011 . + 0 ID=cds-WP_003486701.1;Parent=gene-LLC55_RS19715;Dbxref=Genbank:WP_003486701.1;Name=WP_003486701.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004154489.1;locus_tag=LLC55_RS19715;product=30S ribosomal protein S17;protein_id=WP_003486701.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4184026 4184394 . + . ID=gene-LLC55_RS19720;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=LLC55_RS19720;old_locus_tag=LLC55_19740 NZ_CP086200.1 Protein Homology CDS 4184026 4184394 . + 0 ID=cds-WP_011260026.1;Parent=gene-LLC55_RS19720;Dbxref=Genbank:WP_011260026.1;Name=WP_011260026.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplN;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1;locus_tag=LLC55_RS19720;product=50S ribosomal protein L14;protein_id=WP_011260026.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4184410 4184727 . + . ID=gene-LLC55_RS19725;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=LLC55_RS19725;old_locus_tag=LLC55_19745 NZ_CP086200.1 Protein Homology CDS 4184410 4184727 . + 0 ID=cds-WP_011260025.1;Parent=gene-LLC55_RS19725;Dbxref=Genbank:WP_011260025.1;Name=WP_011260025.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplX;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260025.1;locus_tag=LLC55_RS19725;product=50S ribosomal protein L24;protein_id=WP_011260025.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4184739 4185281 . + . ID=gene-LLC55_RS19730;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=LLC55_RS19730;old_locus_tag=LLC55_19750 NZ_CP086200.1 Protein Homology CDS 4184739 4185281 . + 0 ID=cds-WP_011260024.1;Parent=gene-LLC55_RS19730;Dbxref=Genbank:WP_011260024.1;Name=WP_011260024.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486694.1;locus_tag=LLC55_RS19730;product=50S ribosomal protein L5;protein_id=WP_011260024.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4185300 4185605 . + . ID=gene-LLC55_RS19735;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=LLC55_RS19735;old_locus_tag=LLC55_19755 NZ_CP086200.1 Protein Homology CDS 4185300 4185605 . + 0 ID=cds-WP_005917137.1;Parent=gene-LLC55_RS19735;Dbxref=Genbank:WP_005917137.1;Name=WP_005917137.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917137.1;locus_tag=LLC55_RS19735;product=30S ribosomal protein S14;protein_id=WP_005917137.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4185811 4186209 . + . ID=gene-LLC55_RS19740;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=LLC55_RS19740;old_locus_tag=LLC55_19760 NZ_CP086200.1 Protein Homology CDS 4185811 4186209 . + 0 ID=cds-WP_011260023.1;Parent=gene-LLC55_RS19740;Dbxref=Genbank:WP_011260023.1;Name=WP_011260023.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932726.1;locus_tag=LLC55_RS19740;product=30S ribosomal protein S8;protein_id=WP_011260023.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4186225 4186752 . + . ID=gene-LLC55_RS19745;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=LLC55_RS19745;old_locus_tag=LLC55_19765 NZ_CP086200.1 Protein Homology CDS 4186225 4186752 . + 0 ID=cds-WP_011260022.1;Parent=gene-LLC55_RS19745;Dbxref=Genbank:WP_011260022.1;Name=WP_011260022.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0022625;gbkey=CDS;gene=rplF;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450642.1;locus_tag=LLC55_RS19745;product=50S ribosomal protein L6;protein_id=WP_011260022.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4186841 4187200 . + . ID=gene-LLC55_RS19750;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=LLC55_RS19750;old_locus_tag=LLC55_19770 NZ_CP086200.1 Protein Homology CDS 4186841 4187200 . + 0 ID=cds-WP_010371104.1;Parent=gene-LLC55_RS19750;Dbxref=Genbank:WP_010371104.1;Name=WP_010371104.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplR;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811659.1;locus_tag=LLC55_RS19750;product=50S ribosomal protein L18;protein_id=WP_010371104.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4187359 4187901 . + . ID=gene-LLC55_RS19755;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=LLC55_RS19755;old_locus_tag=LLC55_19775 NZ_CP086200.1 Protein Homology CDS 4187359 4187901 . + 0 ID=cds-WP_003486682.1;Parent=gene-LLC55_RS19755;Dbxref=Genbank:WP_003486682.1;Name=WP_003486682.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsE;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004145411.1;locus_tag=LLC55_RS19755;product=30S ribosomal protein S5;protein_id=WP_003486682.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4187894 4188085 . + . ID=gene-LLC55_RS19760;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=LLC55_RS19760;old_locus_tag=LLC55_19780 NZ_CP086200.1 Protein Homology CDS 4187894 4188085 . + 0 ID=cds-WP_003486678.1;Parent=gene-LLC55_RS19760;Dbxref=Genbank:WP_003486678.1;Name=WP_003486678.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmD;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486678.1;locus_tag=LLC55_RS19760;product=50S ribosomal protein L30;protein_id=WP_003486678.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4188090 4188533 . + . ID=gene-LLC55_RS19765;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=LLC55_RS19765;old_locus_tag=LLC55_19785 NZ_CP086200.1 Protein Homology CDS 4188090 4188533 . + 0 ID=cds-WP_011260021.1;Parent=gene-LLC55_RS19765;Dbxref=Genbank:WP_011260021.1;Name=WP_011260021.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplO;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486676.1;locus_tag=LLC55_RS19765;product=50S ribosomal protein L15;protein_id=WP_011260021.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4188541 4189905 . + . ID=gene-LLC55_RS19770;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=LLC55_RS19770;old_locus_tag=LLC55_19790 NZ_CP086200.1 Protein Homology CDS 4188541 4189905 . + 0 ID=cds-WP_011409256.1;Parent=gene-LLC55_RS19770;Dbxref=Genbank:WP_011409256.1;Name=WP_011409256.1;Ontology_term=GO:0043952,GO:0015450,GO:0005886;gbkey=CDS;gene=secY;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486674.1;locus_tag=LLC55_RS19770;product=preprotein translocase subunit SecY;protein_id=WP_011409256.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4190238 4190594 . + . ID=gene-LLC55_RS19775;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=LLC55_RS19775;old_locus_tag=LLC55_19795 NZ_CP086200.1 Protein Homology CDS 4190238 4190594 . + 0 ID=cds-WP_003486672.1;Parent=gene-LLC55_RS19775;Dbxref=Genbank:WP_003486672.1;Name=WP_003486672.1;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;gene=rpsM;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004154500.1;locus_tag=LLC55_RS19775;product=30S ribosomal protein S13;protein_id=WP_003486672.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4190605 4190997 . + . ID=gene-LLC55_RS19780;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=LLC55_RS19780;old_locus_tag=LLC55_19800 NZ_CP086200.1 Protein Homology CDS 4190605 4190997 . + 0 ID=cds-WP_011260019.1;Parent=gene-LLC55_RS19780;Dbxref=Genbank:WP_011260019.1;Name=WP_011260019.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_004996786.1;locus_tag=LLC55_RS19780;product=30S ribosomal protein S11;protein_id=WP_011260019.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4191013 4191639 . + . ID=gene-LLC55_RS19785;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=LLC55_RS19785;old_locus_tag=LLC55_19805 NZ_CP086200.1 Protein Homology CDS 4191013 4191639 . + 0 ID=cds-WP_044756501.1;Parent=gene-LLC55_RS19785;Dbxref=Genbank:WP_044756501.1;Name=WP_044756501.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004145446.1;locus_tag=LLC55_RS19785;product=30S ribosomal protein S4;protein_id=WP_044756501.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4191693 4192691 . + . ID=gene-LLC55_RS19790;Name=rpoA;gbkey=Gene;gene=rpoA;gene_biotype=protein_coding;locus_tag=LLC55_RS19790;old_locus_tag=LLC55_19810 NZ_CP086200.1 Protein Homology CDS 4191693 4192691 . + 0 ID=cds-WP_002811635.1;Parent=gene-LLC55_RS19790;Dbxref=Genbank:WP_002811635.1;Name=WP_002811635.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899,GO:0046983;gbkey=CDS;gene=rpoA;go_function=DNA binding|0003677||IEA,DNA-directed 5'-3' RNA polymerase activity|0003899||IEA,protein dimerization activity|0046983||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852431.1;locus_tag=LLC55_RS19790;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_002811635.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4192873 4193256 . + . ID=gene-LLC55_RS19795;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=LLC55_RS19795;old_locus_tag=LLC55_19815 NZ_CP086200.1 Protein Homology CDS 4192873 4193256 . + 0 ID=cds-WP_003486665.1;Parent=gene-LLC55_RS19795;Dbxref=Genbank:WP_003486665.1;Name=WP_003486665.1;Ontology_term=GO:0006412,GO:0003735,GO:0005762,GO:0022625;gbkey=CDS;gene=rplQ;go_component=mitochondrial large ribosomal subunit|0005762||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340456.1;locus_tag=LLC55_RS19795;product=50S ribosomal protein L17;protein_id=WP_003486665.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4193390 4194448 . - . ID=gene-LLC55_RS19800;Name=LLC55_RS19800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19800;old_locus_tag=LLC55_19820 NZ_CP086200.1 Protein Homology CDS 4193390 4194448 . - 0 ID=cds-WP_228329632.1;Parent=gene-LLC55_RS19800;Dbxref=Genbank:WP_228329632.1;Name=WP_228329632.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409255.1;locus_tag=LLC55_RS19800;product=IS630 family transposase;protein_id=WP_228329632.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4194630 4195393 . - . ID=gene-LLC55_RS19805;Name=LLC55_RS19805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19805;old_locus_tag=LLC55_19825 NZ_CP086200.1 Protein Homology CDS 4195078 4195393 . - 0 ID=cds-WP_094187715.1-13;Parent=gene-LLC55_RS19805;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS19805;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4194630 4195078 . - 2 ID=cds-WP_094187715.1-13;Parent=gene-LLC55_RS19805;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS19805;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4195550 4196506 . + . ID=gene-LLC55_RS19810;Name=LLC55_RS19810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19810;old_locus_tag=LLC55_19830 NZ_CP086200.1 Protein Homology CDS 4195550 4196506 . + 0 ID=cds-WP_228329633.1;Parent=gene-LLC55_RS19810;Dbxref=Genbank:WP_228329633.1;Name=WP_228329633.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS19810;product=IS30-like element IS1112a family transposase;protein_id=WP_228329633.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4196605 4197646 . + . ID=gene-LLC55_RS19815;Name=LLC55_RS19815;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19815;old_locus_tag=LLC55_19835;pseudo=true NZ_CP086200.1 Protein Homology CDS 4196605 4197646 . + 0 ID=cds-LLC55_RS19815;Parent=gene-LLC55_RS19815;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS19815;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4197678 4197761 . - . ID=gene-LLC55_RS19820;Name=LLC55_RS19820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19820;old_locus_tag=LLC55_19840;partial=true;pseudo=true;start_range=.,4197678 NZ_CP086200.1 Protein Homology CDS 4197678 4197761 . - 0 ID=cds-LLC55_RS19820;Parent=gene-LLC55_RS19820;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS19820;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,4197678;transl_table=11 NZ_CP086200.1 RefSeq gene 4197907 4198992 . - . ID=gene-LLC55_RS19825;Name=LLC55_RS19825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19825;old_locus_tag=LLC55_19845 NZ_CP086200.1 Protein Homology CDS 4197907 4198992 . - 0 ID=cds-WP_011409252.1;Parent=gene-LLC55_RS19825;Dbxref=Genbank:WP_011409252.1;Name=WP_011409252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305349.1;locus_tag=LLC55_RS19825;product=DUF3396 domain-containing protein;protein_id=WP_011409252.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4198989 4200059 . - . ID=gene-LLC55_RS19830;Name=LLC55_RS19830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19830;old_locus_tag=LLC55_19850 NZ_CP086200.1 Protein Homology CDS 4198989 4200059 . - 0 ID=cds-WP_011409251.1;Parent=gene-LLC55_RS19830;Dbxref=Genbank:WP_011409251.1;Name=WP_011409251.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409251.1;locus_tag=LLC55_RS19830;product=DUF3396 domain-containing protein;protein_id=WP_011409251.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4200067 4200762 . - . ID=gene-LLC55_RS19835;Name=LLC55_RS19835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19835;old_locus_tag=LLC55_19855 NZ_CP086200.1 Protein Homology CDS 4200067 4200762 . - 0 ID=cds-WP_011409250.1;Parent=gene-LLC55_RS19835;Dbxref=Genbank:WP_011409250.1;Name=WP_011409250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409250.1;locus_tag=LLC55_RS19835;product=VRR-NUC domain-containing protein;protein_id=WP_011409250.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4200759 4201208 . - . ID=gene-LLC55_RS19840;Name=LLC55_RS19840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19840;old_locus_tag=LLC55_19860 NZ_CP086200.1 Protein Homology CDS 4200759 4201208 . - 0 ID=cds-WP_011409249.1;Parent=gene-LLC55_RS19840;Dbxref=Genbank:WP_011409249.1;Name=WP_011409249.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409249.1;locus_tag=LLC55_RS19840;product=hypothetical protein;protein_id=WP_011409249.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4201538 4204492 . - . ID=gene-LLC55_RS19845;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=LLC55_RS19845;old_locus_tag=LLC55_19865 NZ_CP086200.1 Protein Homology CDS 4201538 4204492 . - 0 ID=cds-WP_069965063.1;Parent=gene-LLC55_RS19845;Dbxref=Genbank:WP_069965063.1;Name=WP_069965063.1;Ontology_term=GO:0019464,GO:0004375;gbkey=CDS;gene=gcvP;go_function=glycine dehydrogenase (decarboxylating) activity|0004375||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050782.1;locus_tag=LLC55_RS19845;product=aminomethyl-transferring glycine dehydrogenase;protein_id=WP_069965063.1;transl_table=11 NZ_CP086200.1 cmsearch riboswitch 4204592 4204706 . - . ID=id-NZ_CP086200.1:4204592..4204706;Dbxref=RFAM:RF00504;Note=glycine riboswitch;bound_moiety=glycine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch NZ_CP086200.1 RefSeq gene 4204960 4205142 . - . ID=gene-LLC55_RS19850;Name=raxX;gbkey=Gene;gene=raxX;gene_biotype=protein_coding;locus_tag=LLC55_RS19850;old_locus_tag=LLC55_19870 NZ_CP086200.1 Protein Homology CDS 4204960 4205142 . - 0 ID=cds-WP_027703308.1;Parent=gene-LLC55_RS19850;Dbxref=Genbank:WP_027703308.1;Name=WP_027703308.1;gbkey=CDS;gene=raxX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154694.1;locus_tag=LLC55_RS19850;product=RaxX family RiPP;protein_id=WP_027703308.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4205573 4206376 . + . ID=gene-LLC55_RS19855;Name=raxST;gbkey=Gene;gene=raxST;gene_biotype=protein_coding;locus_tag=LLC55_RS19855;old_locus_tag=LLC55_19875 NZ_CP086200.1 Protein Homology CDS 4205573 4206376 . + 0 ID=cds-WP_027703307.1;Parent=gene-LLC55_RS19855;Dbxref=Genbank:WP_027703307.1;Name=WP_027703307.1;gbkey=CDS;gene=raxST;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160223.1;locus_tag=LLC55_RS19855;product=RiPP modification sulfotransferase RaxST;protein_id=WP_027703307.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4206357 4207676 . + . ID=gene-LLC55_RS19860;Name=LLC55_RS19860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19860;old_locus_tag=LLC55_19880 NZ_CP086200.1 Protein Homology CDS 4206357 4207676 . + 0 ID=cds-WP_011260007.1;Parent=gene-LLC55_RS19860;Dbxref=Genbank:WP_011260007.1;Name=WP_011260007.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154692.1;locus_tag=LLC55_RS19860;product=HlyD family efflux transporter periplasmic adaptor subunit;protein_id=WP_011260007.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4207673 4209832 . + . ID=gene-LLC55_RS19865;Name=raxB;gbkey=Gene;gene=raxB;gene_biotype=protein_coding;locus_tag=LLC55_RS19865;old_locus_tag=LLC55_19885 NZ_CP086200.1 Protein Homology CDS 4207673 4209832 . + 0 ID=cds-WP_011409245.1;Parent=gene-LLC55_RS19865;Dbxref=Genbank:WP_011409245.1;Name=WP_011409245.1;Note=Cleaves RaxX at a Gly-Gly motif on export.;gbkey=CDS;gene=raxB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302887.1;locus_tag=LLC55_RS19865;product=peptidase domain-containing ABC transporter RaxB;protein_id=WP_011409245.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4210127 4211157 . + . ID=gene-LLC55_RS19870;Name=LLC55_RS19870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19870;old_locus_tag=LLC55_19890;pseudo=true NZ_CP086200.1 Protein Homology CDS 4210127 4211157 . + 0 ID=cds-LLC55_RS19870;Parent=gene-LLC55_RS19870;Note=frameshifted;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930283.1;locus_tag=LLC55_RS19870;product=MFS transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4211174 4211578 . + . ID=gene-LLC55_RS19875;Name=LLC55_RS19875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19875;old_locus_tag=LLC55_19895 NZ_CP086200.1 Protein Homology CDS 4211174 4211578 . + 0 ID=cds-WP_011260005.1;Parent=gene-LLC55_RS19875;Dbxref=Genbank:WP_011260005.1;Name=WP_011260005.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154690.1;locus_tag=LLC55_RS19875;product=hypothetical protein;protein_id=WP_011260005.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4211660 4213678 . - . ID=gene-LLC55_RS19880;Name=LLC55_RS19880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19880;old_locus_tag=LLC55_19900 NZ_CP086200.1 Protein Homology CDS 4211660 4213678 . - 0 ID=cds-WP_075242315.1;Parent=gene-LLC55_RS19880;Dbxref=Genbank:WP_075242315.1;Name=WP_075242315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484383.1;locus_tag=LLC55_RS19880;product=M2 family metallopeptidase;protein_id=WP_075242315.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4213790 4215460 . - . ID=gene-LLC55_RS19885;Name=LLC55_RS19885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19885;old_locus_tag=LLC55_19905 NZ_CP086200.1 Protein Homology CDS 4213790 4215460 . - 0 ID=cds-WP_011409242.1;Parent=gene-LLC55_RS19885;Dbxref=Genbank:WP_011409242.1;Name=WP_011409242.1;Ontology_term=GO:0016772;gbkey=CDS;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577029.1;locus_tag=LLC55_RS19885;product=phosphoethanolamine--lipid A transferase;protein_id=WP_011409242.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4215457 4216221 . - . ID=gene-LLC55_RS19890;Name=LLC55_RS19890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19890;old_locus_tag=LLC55_19910 NZ_CP086200.1 Protein Homology CDS 4215457 4216221 . - 0 ID=cds-WP_011409241.1;Parent=gene-LLC55_RS19890;Dbxref=Genbank:WP_011409241.1;Name=WP_011409241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089620.1;locus_tag=LLC55_RS19890;product=phosphatase PAP2 family protein;protein_id=WP_011409241.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4216321 4218054 . - . ID=gene-LLC55_RS19895;Name=LLC55_RS19895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19895;old_locus_tag=LLC55_19915 NZ_CP086200.1 Protein Homology CDS 4216321 4218054 . - 0 ID=cds-WP_041182250.1;Parent=gene-LLC55_RS19895;Dbxref=Genbank:WP_041182250.1;Name=WP_041182250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930293.1;locus_tag=LLC55_RS19895;product=glycosyltransferase family 39 protein;protein_id=WP_041182250.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4218273 4218989 . + . ID=gene-LLC55_RS19900;Name=LLC55_RS19900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19900;old_locus_tag=LLC55_19920 NZ_CP086200.1 Protein Homology CDS 4218273 4218989 . + 0 ID=cds-WP_011409239.1;Parent=gene-LLC55_RS19900;Dbxref=Genbank:WP_011409239.1;Name=WP_011409239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484375.1;locus_tag=LLC55_RS19900;product=response regulator transcription factor;protein_id=WP_011409239.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4218982 4220274 . + . ID=gene-LLC55_RS19905;Name=LLC55_RS19905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19905;old_locus_tag=LLC55_19925 NZ_CP086200.1 Protein Homology CDS 4218982 4220274 . + 0 ID=cds-WP_011409238.1;Parent=gene-LLC55_RS19905;Dbxref=Genbank:WP_011409238.1;Name=WP_011409238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303739.1;locus_tag=LLC55_RS19905;product=HAMP domain-containing sensor histidine kinase;protein_id=WP_011409238.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4220426 4220917 . - . ID=gene-LLC55_RS19910;Name=LLC55_RS19910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19910;old_locus_tag=LLC55_19930 NZ_CP086200.1 Protein Homology CDS 4220426 4220917 . - 0 ID=cds-WP_027703304.1;Parent=gene-LLC55_RS19910;Dbxref=Genbank:WP_027703304.1;Name=WP_027703304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484372.1;locus_tag=LLC55_RS19910;product=hypothetical protein;protein_id=WP_027703304.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4220986 4221243 . - . ID=gene-LLC55_RS19915;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=LLC55_RS19915;old_locus_tag=LLC55_19935 NZ_CP086200.1 Protein Homology CDS 4220986 4221243 . - 0 ID=cds-WP_003484370.1;Parent=gene-LLC55_RS19915;Dbxref=Genbank:WP_003484370.1;Name=WP_003484370.1;Ontology_term=GO:0032955;gbkey=CDS;gene=minE;go_process=regulation of division septum assembly|0032955||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036323.1;locus_tag=LLC55_RS19915;product=cell division topological specificity factor MinE;protein_id=WP_003484370.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4221246 4222055 . - . ID=gene-LLC55_RS19920;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=LLC55_RS19920;old_locus_tag=LLC55_19940 NZ_CP086200.1 Protein Homology CDS 4221246 4222055 . - 0 ID=cds-WP_012444318.1;Parent=gene-LLC55_RS19920;Dbxref=Genbank:WP_012444318.1;Name=WP_012444318.1;Ontology_term=GO:0000918,GO:0016887;gbkey=CDS;gene=minD;go_function=ATP hydrolysis activity|0016887||IEA;go_process=division septum site selection|0000918||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006424120.1;locus_tag=LLC55_RS19920;product=septum site-determining protein MinD;protein_id=WP_012444318.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4222091 4222831 . - . ID=gene-LLC55_RS19925;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=LLC55_RS19925;old_locus_tag=LLC55_19945 NZ_CP086200.1 Protein Homology CDS 4222091 4222831 . - 0 ID=cds-WP_011409235.1;Parent=gene-LLC55_RS19925;Dbxref=Genbank:WP_011409235.1;Name=WP_011409235.1;Ontology_term=GO:0000918,GO:0004857;gbkey=CDS;gene=minC;go_function=enzyme inhibitor activity|0004857||IEA;go_process=division septum site selection|0000918||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973818.1;locus_tag=LLC55_RS19925;product=septum site-determining protein MinC;protein_id=WP_011409235.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4222836 4223432 . - . ID=gene-LLC55_RS19930;Name=LLC55_RS19930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19930;old_locus_tag=LLC55_19950 NZ_CP086200.1 Protein Homology CDS 4222836 4223432 . - 0 ID=cds-WP_011259995.1;Parent=gene-LLC55_RS19930;Dbxref=Genbank:WP_011259995.1;Name=WP_011259995.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156556.1;locus_tag=LLC55_RS19930;product=GNAT family N-acetyltransferase;protein_id=WP_011259995.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4223677 4224873 . + . ID=gene-LLC55_RS19935;Name=LLC55_RS19935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19935;old_locus_tag=LLC55_19955 NZ_CP086200.1 Protein Homology CDS 4223677 4224873 . + 0 ID=cds-WP_011259994.1;Parent=gene-LLC55_RS19935;Dbxref=Genbank:WP_011259994.1;Name=WP_011259994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171659.1;locus_tag=LLC55_RS19935;product=sensor histidine kinase;protein_id=WP_011259994.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4224873 4225514 . + . ID=gene-LLC55_RS19940;Name=LLC55_RS19940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19940;old_locus_tag=LLC55_19960 NZ_CP086200.1 Protein Homology CDS 4224873 4225514 . + 0 ID=cds-WP_010371538.1;Parent=gene-LLC55_RS19940;Dbxref=Genbank:WP_010371538.1;Name=WP_010371538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807809.1;locus_tag=LLC55_RS19940;product=response regulator transcription factor;protein_id=WP_010371538.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4225865 4227046 . + . ID=gene-LLC55_RS19945;Name=LLC55_RS19945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19945;old_locus_tag=LLC55_19965 NZ_CP086200.1 Protein Homology CDS 4225865 4227046 . + 0 ID=cds-WP_011259992.1;Parent=gene-LLC55_RS19945;Dbxref=Genbank:WP_011259992.1;Name=WP_011259992.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117313.1;locus_tag=LLC55_RS19945;product=SRPBCC family protein;protein_id=WP_011259992.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4227128 4227514 . + . ID=gene-LLC55_RS19950;Name=LLC55_RS19950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19950;old_locus_tag=LLC55_19970 NZ_CP086200.1 Protein Homology CDS 4227128 4227514 . + 0 ID=cds-WP_027703302.1;Parent=gene-LLC55_RS19950;Dbxref=Genbank:WP_027703302.1;Name=WP_027703302.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259991.1;locus_tag=LLC55_RS19950;product=DUF423 domain-containing protein;protein_id=WP_027703302.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4227517 4228191 . + . ID=gene-LLC55_RS19955;Name=LLC55_RS19955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19955;old_locus_tag=LLC55_19975 NZ_CP086200.1 Protein Homology CDS 4227517 4228191 . + 0 ID=cds-WP_011259990.1;Parent=gene-LLC55_RS19955;Dbxref=Genbank:WP_011259990.1;Name=WP_011259990.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574704.1;locus_tag=LLC55_RS19955;product=DNA-3-methyladenine glycosylase;protein_id=WP_011259990.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4228255 4229052 . - . ID=gene-LLC55_RS19960;Name=LLC55_RS19960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19960;old_locus_tag=LLC55_19980 NZ_CP086200.1 Protein Homology CDS 4228255 4229052 . - 0 ID=cds-WP_069959977.1;Parent=gene-LLC55_RS19960;Dbxref=Genbank:WP_069959977.1;Name=WP_069959977.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259989.1;locus_tag=LLC55_RS19960;product=D-alanyl-D-alanine carboxypeptidase family protein;protein_id=WP_069959977.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4229183 4229362 . - . ID=gene-LLC55_RS19965;Name=LLC55_RS19965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19965;old_locus_tag=LLC55_19985 NZ_CP086200.1 Protein Homology CDS 4229183 4229362 . - 0 ID=cds-WP_011259988.1;Parent=gene-LLC55_RS19965;Dbxref=Genbank:WP_011259988.1;Name=WP_011259988.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302659.1;locus_tag=LLC55_RS19965;product=Arc family DNA-binding protein;protein_id=WP_011259988.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4229359 4229643 . - . ID=gene-LLC55_RS19970;Name=LLC55_RS19970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19970;old_locus_tag=LLC55_19990 NZ_CP086200.1 Protein Homology CDS 4229359 4229643 . - 0 ID=cds-WP_011259987.1;Parent=gene-LLC55_RS19970;Dbxref=Genbank:WP_011259987.1;Name=WP_011259987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156562.1;locus_tag=LLC55_RS19970;product=hypothetical protein;protein_id=WP_011259987.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4229653 4230060 . - . ID=gene-LLC55_RS19975;Name=LLC55_RS19975;end_range=4230060,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS19975;old_locus_tag=LLC55_19995;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4229653 4230060 . - 0 ID=cds-LLC55_RS19975;Parent=gene-LLC55_RS19975;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4230060,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507017.1;locus_tag=LLC55_RS19975;partial=true;product=SPFH domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4230260 4231462 . + . ID=gene-LLC55_RS19980;Name=purT;gbkey=Gene;gene=purT;gene_biotype=protein_coding;locus_tag=LLC55_RS19980;old_locus_tag=LLC55_20000 NZ_CP086200.1 Protein Homology CDS 4230260 4231462 . + 0 ID=cds-WP_048483117.1;Parent=gene-LLC55_RS19980;Dbxref=Genbank:WP_048483117.1;Name=WP_048483117.1;Ontology_term=GO:0009152,GO:0000287,GO:0004644,GO:0005524;gbkey=CDS;gene=purT;go_function=magnesium ion binding|0000287||IEA,phosphoribosylglycinamide formyltransferase activity|0004644||IEA,ATP binding|0005524||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472403.1;locus_tag=LLC55_RS19980;product=formate-dependent phosphoribosylglycinamide formyltransferase;protein_id=WP_048483117.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4231662 4232060 . - . ID=gene-LLC55_RS19985;Name=LLC55_RS19985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19985;old_locus_tag=LLC55_20005 NZ_CP086200.1 Protein Homology CDS 4231662 4232060 . - 0 ID=cds-WP_143704877.1;Parent=gene-LLC55_RS19985;Dbxref=Genbank:WP_143704877.1;Name=WP_143704877.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013752.2;locus_tag=LLC55_RS19985;product=transposase;protein_id=WP_143704877.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4232046 4232216 . - . ID=gene-LLC55_RS23390;Name=LLC55_RS23390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23390;partial=true;pseudo=true;start_range=.,4232046 NZ_CP086200.1 Protein Homology CDS 4232046 4232216 . - 0 ID=cds-LLC55_RS23390;Parent=gene-LLC55_RS23390;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612143.1;locus_tag=LLC55_RS23390;partial=true;product=transposase;pseudo=true;start_range=.,4232046;transl_table=11 NZ_CP086200.1 RefSeq gene 4232479 4233144 . - . ID=gene-LLC55_RS19990;Name=LLC55_RS19990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19990;old_locus_tag=LLC55_20010 NZ_CP086200.1 Protein Homology CDS 4232479 4233144 . - 0 ID=cds-WP_228329761.1;Parent=gene-LLC55_RS19990;Dbxref=Genbank:WP_228329761.1;Name=WP_228329761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502379.1;locus_tag=LLC55_RS19990;product=hypothetical protein;protein_id=WP_228329761.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4233419 4234297 . + . ID=gene-LLC55_RS19995;Name=LLC55_RS19995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS19995;old_locus_tag=LLC55_20015 NZ_CP086200.1 Protein Homology CDS 4233419 4234297 . + 0 ID=cds-WP_011259982.1;Parent=gene-LLC55_RS19995;Dbxref=Genbank:WP_011259982.1;Name=WP_011259982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801819.1;locus_tag=LLC55_RS19995;product=M15 family metallopeptidase;protein_id=WP_011259982.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4234407 4234667 . + . ID=gene-LLC55_RS20000;Name=LLC55_RS20000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20000;old_locus_tag=LLC55_20020 NZ_CP086200.1 Protein Homology CDS 4234407 4234667 . + 0 ID=cds-WP_011409228.1;Parent=gene-LLC55_RS20000;Dbxref=Genbank:WP_011409228.1;Name=WP_011409228.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003471049.1;locus_tag=LLC55_RS20000;product=PAAR domain-containing protein;protein_id=WP_011409228.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4234727 4236208 . + . ID=gene-LLC55_RS20005;Name=LLC55_RS20005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20005;old_locus_tag=LLC55_20025 NZ_CP086200.1 Protein Homology CDS 4234727 4236208 . + 0 ID=cds-WP_059317431.1;Parent=gene-LLC55_RS20005;Dbxref=Genbank:WP_059317431.1;Name=WP_059317431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444329.1;locus_tag=LLC55_RS20005;product=hypothetical protein;protein_id=WP_059317431.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4236224 4239961 . + . ID=gene-LLC55_RS20010;Name=tssM;gbkey=Gene;gene=tssM;gene_biotype=protein_coding;locus_tag=LLC55_RS20010;old_locus_tag=LLC55_20030 NZ_CP086200.1 Protein Homology CDS 4236224 4239961 . + 0 ID=cds-WP_069964588.1;Parent=gene-LLC55_RS20010;Dbxref=Genbank:WP_069964588.1;Name=WP_069964588.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssM;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801812.1;locus_tag=LLC55_RS20010;product=type VI secretion system membrane subunit TssM;protein_id=WP_069964588.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4239958 4240941 . + . ID=gene-LLC55_RS20015;Name=tagF;gbkey=Gene;gene=tagF;gene_biotype=protein_coding;locus_tag=LLC55_RS20015;old_locus_tag=LLC55_20035 NZ_CP086200.1 Protein Homology CDS 4239958 4240941 . + 0 ID=cds-WP_011259979.1;Parent=gene-LLC55_RS20015;Dbxref=Genbank:WP_011259979.1;Name=WP_011259979.1;gbkey=CDS;gene=tagF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259979.1;locus_tag=LLC55_RS20015;product=type VI secretion system-associated protein TagF;protein_id=WP_011259979.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4240938 4241768 . + . ID=gene-LLC55_RS20020;Name=LLC55_RS20020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20020;old_locus_tag=LLC55_20040 NZ_CP086200.1 Protein Homology CDS 4240938 4241768 . + 0 ID=cds-WP_044756514.1;Parent=gene-LLC55_RS20020;Dbxref=Genbank:WP_044756514.1;Name=WP_044756514.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444331.1;locus_tag=LLC55_RS20020;product=OmpA family protein;protein_id=WP_044756514.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4241821 4242894 . - . ID=gene-LLC55_RS20025;Name=tssA;gbkey=Gene;gene=tssA;gene_biotype=protein_coding;locus_tag=LLC55_RS20025;old_locus_tag=LLC55_20045 NZ_CP086200.1 Protein Homology CDS 4241821 4242894 . - 0 ID=cds-WP_011409224.1;Parent=gene-LLC55_RS20025;Dbxref=Genbank:WP_011409224.1;Name=WP_011409224.1;gbkey=CDS;gene=tssA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003471063.1;locus_tag=LLC55_RS20025;product=type VI secretion system protein TssA;protein_id=WP_011409224.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4243505 4243723 . + . ID=gene-LLC55_RS20030;Name=LLC55_RS20030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20030;old_locus_tag=LLC55_20050 NZ_CP086200.1 GeneMarkS-2+ CDS 4243505 4243723 . + 0 ID=cds-WP_228329634.1;Parent=gene-LLC55_RS20030;Dbxref=Genbank:WP_228329634.1;Name=WP_228329634.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20030;product=hypothetical protein;protein_id=WP_228329634.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4243844 4246819 . + . ID=gene-LLC55_RS20035;Name=LLC55_RS20035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20035;old_locus_tag=LLC55_20055 NZ_CP086200.1 Protein Homology CDS 4243844 4246819 . + 0 ID=cds-WP_228329635.1;Parent=gene-LLC55_RS20035;Dbxref=Genbank:WP_228329635.1;Name=WP_228329635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444332.1;locus_tag=LLC55_RS20035;product=type VI secretion system Vgr family protein;protein_id=WP_228329635.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4246923 4249871 . + . ID=gene-LLC55_RS20040;Name=LLC55_RS20040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20040;old_locus_tag=LLC55_20060 NZ_CP086200.1 Protein Homology CDS 4246923 4249871 . + 0 ID=cds-WP_228329636.1;Parent=gene-LLC55_RS20040;Dbxref=Genbank:WP_228329636.1;Name=WP_228329636.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801754.1;locus_tag=LLC55_RS20040;product=DNA repair protein;protein_id=WP_228329636.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4250019 4250978 . - . ID=gene-LLC55_RS20045;Name=LLC55_RS20045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20045;old_locus_tag=LLC55_20065 NZ_CP086200.1 Protein Homology CDS 4250019 4250978 . - 0 ID=cds-WP_044756518.1;Parent=gene-LLC55_RS20045;Dbxref=Genbank:WP_044756518.1;Name=WP_044756518.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444336.1;locus_tag=LLC55_RS20045;product=SUMF1/EgtB/PvdO family nonheme iron enzyme;protein_id=WP_044756518.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4251037 4251612 . + . ID=gene-LLC55_RS20050;Name=LLC55_RS20050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20050;old_locus_tag=LLC55_20070 NZ_CP086200.1 Protein Homology CDS 4251037 4251612 . + 0 ID=cds-WP_044756519.1;Parent=gene-LLC55_RS20050;Dbxref=Genbank:WP_044756519.1;Name=WP_044756519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444337.1;locus_tag=LLC55_RS20050;product=hypothetical protein;protein_id=WP_044756519.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4251669 4252625 . - . ID=gene-LLC55_RS20055;Name=LLC55_RS20055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20055;old_locus_tag=LLC55_20075 NZ_CP086200.1 Protein Homology CDS 4251669 4252625 . - 0 ID=cds-WP_059317432.1;Parent=gene-LLC55_RS20055;Dbxref=Genbank:WP_059317432.1;Name=WP_059317432.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444336.1;locus_tag=LLC55_RS20055;product=SUMF1/EgtB/PvdO family nonheme iron enzyme;protein_id=WP_059317432.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4253045 4255474 . + . ID=gene-LLC55_RS20060;Name=LLC55_RS20060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20060;old_locus_tag=LLC55_20080;partial=true;pseudo=true;start_range=.,4253045 NZ_CP086200.1 Protein Homology CDS 4253045 4255474 . + 0 ID=cds-LLC55_RS20060;Parent=gene-LLC55_RS20060;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008264699.1;locus_tag=LLC55_RS20060;partial=true;product=type VI secretion system Vgr family protein;pseudo=true;start_range=.,4253045;transl_table=11 NZ_CP086200.1 RefSeq gene 4255489 4256370 . + . ID=gene-LLC55_RS20065;Name=LLC55_RS20065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20065;old_locus_tag=LLC55_20085 NZ_CP086200.1 Protein Homology CDS 4255489 4256370 . + 0 ID=cds-WP_229001898.1;Parent=gene-LLC55_RS20065;Dbxref=Genbank:WP_229001898.1;Name=WP_229001898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801745.1;locus_tag=LLC55_RS20065;product=DUF4123 domain-containing protein;protein_id=WP_229001898.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4256367 4256831 . + . ID=gene-LLC55_RS20070;Name=LLC55_RS20070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20070;old_locus_tag=LLC55_20090 NZ_CP086200.1 Protein Homology CDS 4256367 4256831 . + 0 ID=cds-WP_011409220.1;Parent=gene-LLC55_RS20070;Dbxref=Genbank:WP_011409220.1;Name=WP_011409220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259972.1;locus_tag=LLC55_RS20070;product=DUF3304 domain-containing protein;protein_id=WP_011409220.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4256855 4257334 . + . ID=gene-LLC55_RS20075;Name=LLC55_RS20075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20075;old_locus_tag=LLC55_20095 NZ_CP086200.1 Protein Homology CDS 4256855 4257334 . + 0 ID=cds-WP_011409219.1;Parent=gene-LLC55_RS20075;Dbxref=Genbank:WP_011409219.1;Name=WP_011409219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409219.1;locus_tag=LLC55_RS20075;product=DUF3304 domain-containing protein;protein_id=WP_011409219.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4257331 4257654 . + . ID=gene-LLC55_RS20080;Name=LLC55_RS20080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20080;old_locus_tag=LLC55_20100 NZ_CP086200.1 GeneMarkS-2+ CDS 4257331 4257654 . + 0 ID=cds-WP_048485619.1;Parent=gene-LLC55_RS20080;Dbxref=Genbank:WP_048485619.1;Name=WP_048485619.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20080;product=hypothetical protein;protein_id=WP_048485619.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4257651 4258115 . + . ID=gene-LLC55_RS20085;Name=LLC55_RS20085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20085;old_locus_tag=LLC55_20105 NZ_CP086200.1 Protein Homology CDS 4257651 4258115 . + 0 ID=cds-WP_011259972.1;Parent=gene-LLC55_RS20085;Dbxref=Genbank:WP_011259972.1;Name=WP_011259972.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259972.1;locus_tag=LLC55_RS20085;product=DUF3304 domain-containing protein;protein_id=WP_011259972.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4258139 4258618 . + . ID=gene-LLC55_RS20090;Name=LLC55_RS20090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20090;old_locus_tag=LLC55_20110 NZ_CP086200.1 Protein Homology CDS 4258139 4258618 . + 0 ID=cds-WP_011409218.1;Parent=gene-LLC55_RS20090;Dbxref=Genbank:WP_011409218.1;Name=WP_011409218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409219.1;locus_tag=LLC55_RS20090;product=DUF3304 domain-containing protein;protein_id=WP_011409218.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4258615 4259109 . + . ID=gene-LLC55_RS20095;Name=LLC55_RS20095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20095;old_locus_tag=LLC55_20115 NZ_CP086200.1 Protein Homology CDS 4258615 4259109 . + 0 ID=cds-WP_219724822.1;Parent=gene-LLC55_RS20095;Dbxref=Genbank:WP_219724822.1;Name=WP_219724822.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021508.2;locus_tag=LLC55_RS20095;product=DUF2235 domain-containing protein;protein_id=WP_219724822.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4259154 4260389 . + . ID=gene-LLC55_RS20100;Name=LLC55_RS20100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20100;old_locus_tag=LLC55_20120 NZ_CP086200.1 Protein Homology CDS 4259154 4260389 . + 0 ID=cds-WP_011409439.1;Parent=gene-LLC55_RS20100;Dbxref=Genbank:WP_011409439.1;Name=WP_011409439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS20100;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011409439.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4260370 4261767 . + . ID=gene-LLC55_RS20105;Name=LLC55_RS20105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20105;old_locus_tag=LLC55_20125 NZ_CP086200.1 Protein Homology CDS 4260370 4261767 . + 0 ID=cds-WP_228329637.1;Parent=gene-LLC55_RS20105;Dbxref=Genbank:WP_228329637.1;Name=WP_228329637.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409217.1;locus_tag=LLC55_RS20105;product=DUF2235 domain-containing protein;protein_id=WP_228329637.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4261790 4262394 . + . ID=gene-LLC55_RS20110;Name=LLC55_RS20110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20110;old_locus_tag=LLC55_20130;partial=true;pseudo=true;start_range=.,4261790 NZ_CP086200.1 Protein Homology CDS 4261790 4262394 . + 0 ID=cds-LLC55_RS20110;Parent=gene-LLC55_RS20110;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444332.1;locus_tag=LLC55_RS20110;partial=true;product=DUF2345 domain-containing protein;pseudo=true;start_range=.,4261790;transl_table=11 NZ_CP086200.1 RefSeq gene 4262498 4265446 . + . ID=gene-LLC55_RS20115;Name=LLC55_RS20115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20115;old_locus_tag=LLC55_20135 NZ_CP086200.1 Protein Homology CDS 4262498 4265446 . + 0 ID=cds-WP_228329638.1;Parent=gene-LLC55_RS20115;Dbxref=Genbank:WP_228329638.1;Name=WP_228329638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801754.1;locus_tag=LLC55_RS20115;product=DNA repair protein;protein_id=WP_228329638.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4265499 4266461 . - . ID=gene-LLC55_RS20120;Name=LLC55_RS20120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20120;old_locus_tag=LLC55_20140 NZ_CP086200.1 Protein Homology CDS 4265499 4266461 . - 0 ID=cds-WP_011409215.1;Parent=gene-LLC55_RS20120;Dbxref=Genbank:WP_011409215.1;Name=WP_011409215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444336.1;locus_tag=LLC55_RS20120;product=SUMF1/EgtB/PvdO family nonheme iron enzyme;protein_id=WP_011409215.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4266647 4269316 . + . ID=gene-LLC55_RS20125;Name=tssI;gbkey=Gene;gene=tssI;gene_biotype=protein_coding;locus_tag=LLC55_RS20125;old_locus_tag=LLC55_20145 NZ_CP086200.1 Protein Homology CDS 4266647 4269316 . + 0 ID=cds-WP_228329639.1;Parent=gene-LLC55_RS20125;Dbxref=Genbank:WP_228329639.1;Name=WP_228329639.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssI;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409214.1;locus_tag=LLC55_RS20125;product=type VI secretion system tip protein TssI/VgrG;protein_id=WP_228329639.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4269322 4270137 . + . ID=gene-LLC55_RS20130;Name=LLC55_RS20130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20130;old_locus_tag=LLC55_20150 NZ_CP086200.1 Protein Homology CDS 4269322 4270137 . + 0 ID=cds-WP_228329640.1;Parent=gene-LLC55_RS20130;Dbxref=Genbank:WP_228329640.1;Name=WP_228329640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009604057.1;locus_tag=LLC55_RS20130;product=DUF4123 domain-containing protein;protein_id=WP_228329640.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4270130 4270726 . + . ID=gene-LLC55_RS20135;Name=LLC55_RS20135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20135;old_locus_tag=LLC55_20155 NZ_CP086200.1 Protein Homology CDS 4270130 4270726 . + 0 ID=cds-WP_011409212.1;Parent=gene-LLC55_RS20135;Dbxref=Genbank:WP_011409212.1;Name=WP_011409212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409212.1;locus_tag=LLC55_RS20135;product=DUF3304 domain-containing protein;protein_id=WP_011409212.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4270726 4272957 . + . ID=gene-LLC55_RS20140;Name=LLC55_RS20140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20140;old_locus_tag=LLC55_20160 NZ_CP086200.1 Protein Homology CDS 4270726 4272957 . + 0 ID=cds-WP_011409211.1;Parent=gene-LLC55_RS20140;Dbxref=Genbank:WP_011409211.1;Name=WP_011409211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009604062.1;locus_tag=LLC55_RS20140;product=DUF2235 domain-containing protein;protein_id=WP_011409211.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4272938 4273327 . + . ID=gene-LLC55_RS20145;Name=LLC55_RS20145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20145;old_locus_tag=LLC55_20165 NZ_CP086200.1 Protein Homology CDS 4272938 4273327 . + 0 ID=cds-WP_011259961.1;Parent=gene-LLC55_RS20145;Dbxref=Genbank:WP_011259961.1;Name=WP_011259961.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259961.1;locus_tag=LLC55_RS20145;product=DUF2345 domain-containing protein;protein_id=WP_011259961.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4273362 4275701 . - . ID=gene-LLC55_RS20150;Name=LLC55_RS20150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20150;old_locus_tag=LLC55_20170 NZ_CP086200.1 Protein Homology CDS 4273362 4275701 . - 0 ID=cds-WP_082323408.1;Parent=gene-LLC55_RS20150;Dbxref=Genbank:WP_082323408.1;Name=WP_082323408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259949.1;locus_tag=LLC55_RS20150;product=type VI secretion system Vgr family protein;protein_id=WP_082323408.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4275712 4276503 . - . ID=gene-LLC55_RS20155;Name=icmH;gbkey=Gene;gene=icmH;gene_biotype=protein_coding;locus_tag=LLC55_RS20155;old_locus_tag=LLC55_20175 NZ_CP086200.1 Protein Homology CDS 4275712 4276503 . - 0 ID=cds-WP_178383471.1;Parent=gene-LLC55_RS20155;Dbxref=Genbank:WP_178383471.1;Name=WP_178383471.1;gbkey=CDS;gene=icmH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304316.1;locus_tag=LLC55_RS20155;product=type IVB secretion system protein IcmH/DotU;protein_id=WP_178383471.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4276500 4277438 . - . ID=gene-LLC55_RS20160;Name=tssK;gbkey=Gene;gene=tssK;gene_biotype=protein_coding;locus_tag=LLC55_RS20160;old_locus_tag=LLC55_20180 NZ_CP086200.1 Protein Homology CDS 4276500 4277438 . - 0 ID=cds-WP_229001946.1;Parent=gene-LLC55_RS20160;Dbxref=Genbank:WP_229001946.1;Name=WP_229001946.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssK;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: protein motif:HMM:TIGR03353.2;locus_tag=LLC55_RS20160;product=type VI secretion system baseplate subunit TssK;protein_id=WP_229001946.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4277485 4278564 . - . ID=gene-LLC55_RS20165;Name=LLC55_RS20165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20165;old_locus_tag=LLC55_20185 NZ_CP086200.1 Protein Homology CDS 4277485 4278564 . - 0 ID=cds-WP_069959972.1;Parent=gene-LLC55_RS20165;Dbxref=Genbank:WP_069959972.1;Name=WP_069959972.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812861.1;locus_tag=LLC55_RS20165;product=Imm71 family immunity protein;protein_id=WP_069959972.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4278561 4278866 . - . ID=gene-LLC55_RS20170;Name=LLC55_RS20170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20170;old_locus_tag=LLC55_20190 NZ_CP086200.1 Protein Homology CDS 4278561 4278866 . - 0 ID=cds-WP_069959971.1;Parent=gene-LLC55_RS20170;Dbxref=Genbank:WP_069959971.1;Name=WP_069959971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812779.1;locus_tag=LLC55_RS20170;product=hypothetical protein;protein_id=WP_069959971.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4278975 4279520 . - . ID=gene-LLC55_RS20175;Name=LLC55_RS20175;end_range=4279520,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20175;old_locus_tag=LLC55_20195;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4278975 4279520 . - 0 ID=cds-LLC55_RS20175;Parent=gene-LLC55_RS20175;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4279520,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812861.1;locus_tag=LLC55_RS20175;partial=true;product=Imm72 family immunity protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4279541 4280755 . - . ID=gene-LLC55_RS20180;Name=LLC55_RS20180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20180;old_locus_tag=LLC55_20200 NZ_CP086200.1 Protein Homology CDS 4279541 4280755 . - 0 ID=cds-WP_041182240.1;Parent=gene-LLC55_RS20180;Dbxref=Genbank:WP_041182240.1;Name=WP_041182240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS20180;product=IS4-like element ISXo14 family transposase;protein_id=WP_041182240.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4280872 4281414 . - . ID=gene-LLC55_RS20185;Name=LLC55_RS20185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20185;old_locus_tag=LLC55_20205;partial=true;pseudo=true;start_range=.,4280872 NZ_CP086200.1 Protein Homology CDS 4280872 4281414 . - 0 ID=cds-LLC55_RS20185;Parent=gene-LLC55_RS20185;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812861.1;locus_tag=LLC55_RS20185;partial=true;product=Imm71 family immunity protein;pseudo=true;start_range=.,4280872;transl_table=11 NZ_CP086200.1 RefSeq gene 4281411 4281812 . - . ID=gene-LLC55_RS20190;Name=LLC55_RS20190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20190;old_locus_tag=LLC55_20210 NZ_CP086200.1 Protein Homology CDS 4281411 4281812 . - 0 ID=cds-WP_228329641.1;Parent=gene-LLC55_RS20190;Dbxref=Genbank:WP_228329641.1;Name=WP_228329641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812779.1;locus_tag=LLC55_RS20190;product=hypothetical protein;protein_id=WP_228329641.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4282028 4282996 . - . ID=gene-LLC55_RS20195;Name=LLC55_RS20195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20195;old_locus_tag=LLC55_20215 NZ_CP086200.1 Protein Homology CDS 4282028 4282996 . - 0 ID=cds-WP_011258803.1-7;Parent=gene-LLC55_RS20195;Dbxref=Genbank:WP_011258803.1;Name=WP_011258803.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS20195;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258803.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4283048 4284055 . - . ID=gene-LLC55_RS20200;Name=LLC55_RS20200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20200;old_locus_tag=LLC55_20220 NZ_CP086200.1 GeneMarkS-2+ CDS 4283048 4284055 . - 0 ID=cds-WP_228329642.1;Parent=gene-LLC55_RS20200;Dbxref=Genbank:WP_228329642.1;Name=WP_228329642.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20200;product=hypothetical protein;protein_id=WP_228329642.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4284115 4286367 . - . ID=gene-LLC55_RS20205;Name=LLC55_RS20205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20205;old_locus_tag=LLC55_20225 NZ_CP086200.1 Protein Homology CDS 4284115 4286367 . - 0 ID=cds-WP_082323406.1;Parent=gene-LLC55_RS20205;Dbxref=Genbank:WP_082323406.1;Name=WP_082323406.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008264661.1;locus_tag=LLC55_RS20205;product=type VI secretion system Vgr family protein;protein_id=WP_082323406.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4286409 4286954 . - . ID=gene-LLC55_RS20210;Name=LLC55_RS20210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20210;old_locus_tag=LLC55_20230 NZ_CP086200.1 GeneMarkS-2+ CDS 4286409 4286954 . - 0 ID=cds-WP_128415298.1;Parent=gene-LLC55_RS20210;Dbxref=Genbank:WP_128415298.1;Name=WP_128415298.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20210;product=hypothetical protein;protein_id=WP_128415298.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4287632 4289008 . + . ID=gene-LLC55_RS20215;Name=LLC55_RS20215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20215;old_locus_tag=LLC55_20235 NZ_CP086200.1 Protein Homology CDS 4287632 4289008 . + 0 ID=cds-WP_228329749.1-2;Parent=gene-LLC55_RS20215;Dbxref=Genbank:WP_228329749.1;Name=WP_228329749.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS20215;product=IS5-like element ISXo4 family transposase;protein_id=WP_228329749.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4289018 4290694 . - . ID=gene-LLC55_RS20220;Name=LLC55_RS20220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20220;old_locus_tag=LLC55_20240 NZ_CP086200.1 GeneMarkS-2+ CDS 4289018 4290694 . - 0 ID=cds-WP_228329643.1;Parent=gene-LLC55_RS20220;Dbxref=Genbank:WP_228329643.1;Name=WP_228329643.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20220;product=M23 family metallopeptidase;protein_id=WP_228329643.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4290707 4292872 . - . ID=gene-LLC55_RS20225;Name=LLC55_RS20225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20225;old_locus_tag=LLC55_20245 NZ_CP086200.1 Protein Homology CDS 4290707 4292872 . - 0 ID=cds-WP_228329644.1;Parent=gene-LLC55_RS20225;Dbxref=Genbank:WP_228329644.1;Name=WP_228329644.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259949.1;locus_tag=LLC55_RS20225;product=type VI secretion system Vgr family protein;protein_id=WP_228329644.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4292881 4293456 . - . ID=gene-LLC55_RS20230;Name=LLC55_RS20230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20230;old_locus_tag=LLC55_20250 NZ_CP086200.1 GeneMarkS-2+ CDS 4292881 4293456 . - 0 ID=cds-WP_125168764.1;Parent=gene-LLC55_RS20230;Dbxref=Genbank:WP_125168764.1;Name=WP_125168764.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20230;product=hypothetical protein;protein_id=WP_125168764.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4293431 4294408 . - . ID=gene-LLC55_RS20235;Name=LLC55_RS20235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20235;old_locus_tag=LLC55_20255 NZ_CP086200.1 GeneMarkS-2+ CDS 4293431 4294408 . - 0 ID=cds-WP_075242365.1;Parent=gene-LLC55_RS20235;Dbxref=Genbank:WP_075242365.1;Name=WP_075242365.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20235;product=hypothetical protein;protein_id=WP_075242365.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4294405 4296681 . - . ID=gene-LLC55_RS20240;Name=LLC55_RS20240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20240;old_locus_tag=LLC55_20260 NZ_CP086200.1 Protein Homology CDS 4294405 4296681 . - 0 ID=cds-WP_229001901.1;Parent=gene-LLC55_RS20240;Dbxref=Genbank:WP_229001901.1;Name=WP_229001901.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409209.1;locus_tag=LLC55_RS20240;product=type VI secretion system Vgr family protein;protein_id=WP_229001901.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4296883 4297368 . - . ID=gene-LLC55_RS20245;Name=LLC55_RS20245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20245;old_locus_tag=LLC55_20265 NZ_CP086200.1 GeneMarkS-2+ CDS 4296883 4297368 . - 0 ID=cds-WP_133260576.1;Parent=gene-LLC55_RS20245;Dbxref=Genbank:WP_133260576.1;Name=WP_133260576.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20245;product=hypothetical protein;protein_id=WP_133260576.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4297797 4298399 . - . ID=gene-LLC55_RS20250;Name=LLC55_RS20250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20250;old_locus_tag=LLC55_20270 NZ_CP086200.1 GeneMarkS-2+ CDS 4297797 4298399 . - 0 ID=cds-WP_133260575.1;Parent=gene-LLC55_RS20250;Dbxref=Genbank:WP_133260575.1;Name=WP_133260575.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20250;product=hypothetical protein;protein_id=WP_133260575.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4298396 4300564 . - . ID=gene-LLC55_RS20255;Name=LLC55_RS20255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20255;old_locus_tag=LLC55_20275 NZ_CP086200.1 Protein Homology CDS 4298396 4300564 . - 0 ID=cds-WP_075242360.1;Parent=gene-LLC55_RS20255;Dbxref=Genbank:WP_075242360.1;Name=WP_075242360.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013700.2;locus_tag=LLC55_RS20255;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=WP_075242360.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4300569 4303103 . - . ID=gene-LLC55_RS20260;Name=LLC55_RS20260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20260;old_locus_tag=LLC55_20280 NZ_CP086200.1 Protein Homology CDS 4300569 4303103 . - 0 ID=cds-WP_228329645.1;Parent=gene-LLC55_RS20260;Dbxref=Genbank:WP_228329645.1;Name=WP_228329645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008264661.1;locus_tag=LLC55_RS20260;product=type VI secretion system Vgr family protein;protein_id=WP_228329645.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4303114 4303905 . - . ID=gene-LLC55_RS20265;Name=icmH;gbkey=Gene;gene=icmH;gene_biotype=protein_coding;locus_tag=LLC55_RS20265;old_locus_tag=LLC55_20285 NZ_CP086200.1 Protein Homology CDS 4303114 4303905 . - 0 ID=cds-WP_014502417.1;Parent=gene-LLC55_RS20265;Dbxref=Genbank:WP_014502417.1;Name=WP_014502417.1;gbkey=CDS;gene=icmH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304316.1;locus_tag=LLC55_RS20265;product=type IVB secretion system protein IcmH/DotU;protein_id=WP_014502417.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4303902 4304840 . - . ID=gene-LLC55_RS20270;Name=tssK;gbkey=Gene;gene=tssK;gene_biotype=protein_coding;locus_tag=LLC55_RS20270;old_locus_tag=LLC55_20290 NZ_CP086200.1 Protein Homology CDS 4303902 4304840 . - 0 ID=cds-WP_229001946.1-2;Parent=gene-LLC55_RS20270;Dbxref=Genbank:WP_229001946.1;Name=WP_229001946.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssK;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: protein motif:HMM:TIGR03353.2;locus_tag=LLC55_RS20270;product=type VI secretion system baseplate subunit TssK;protein_id=WP_229001946.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4304887 4305966 . - . ID=gene-LLC55_RS20275;Name=LLC55_RS20275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20275;old_locus_tag=LLC55_20295 NZ_CP086200.1 Protein Homology CDS 4304887 4305966 . - 0 ID=cds-WP_075243562.1;Parent=gene-LLC55_RS20275;Dbxref=Genbank:WP_075243562.1;Name=WP_075243562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812861.1;locus_tag=LLC55_RS20275;product=Imm71 family immunity protein;protein_id=WP_075243562.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4305963 4307369 . - . ID=gene-LLC55_RS20280;Name=LLC55_RS20280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20280;old_locus_tag=LLC55_20300 NZ_CP086200.1 Protein Homology CDS 4305963 4307369 . - 0 ID=cds-WP_228329646.1;Parent=gene-LLC55_RS20280;Dbxref=Genbank:WP_228329646.1;Name=WP_228329646.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502402.1;locus_tag=LLC55_RS20280;product=hypothetical protein;protein_id=WP_228329646.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4307510 4310338 . - . ID=gene-LLC55_RS20285;Name=LLC55_RS20285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20285;old_locus_tag=LLC55_20305 NZ_CP086200.1 Protein Homology CDS 4307510 4310338 . - 0 ID=cds-WP_228329647.1;Parent=gene-LLC55_RS20285;Dbxref=Genbank:WP_228329647.1;Name=WP_228329647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008264661.1;locus_tag=LLC55_RS20285;product=type VI secretion system Vgr family protein;protein_id=WP_228329647.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4310349 4311140 . - . ID=gene-LLC55_RS20290;Name=icmH;gbkey=Gene;gene=icmH;gene_biotype=protein_coding;locus_tag=LLC55_RS20290;old_locus_tag=LLC55_20310 NZ_CP086200.1 Protein Homology CDS 4310349 4311140 . - 0 ID=cds-WP_014502417.1-2;Parent=gene-LLC55_RS20290;Dbxref=Genbank:WP_014502417.1;Name=WP_014502417.1;gbkey=CDS;gene=icmH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304316.1;locus_tag=LLC55_RS20290;product=type IVB secretion system protein IcmH/DotU;protein_id=WP_014502417.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4311137 4312564 . - . ID=gene-LLC55_RS20295;Name=tssK;gbkey=Gene;gene=tssK;gene_biotype=protein_coding;locus_tag=LLC55_RS20295;old_locus_tag=LLC55_20315 NZ_CP086200.1 Protein Homology CDS 4311137 4312564 . - 0 ID=cds-WP_228329648.1;Parent=gene-LLC55_RS20295;Dbxref=Genbank:WP_228329648.1;Name=WP_228329648.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssK;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008209983.1;locus_tag=LLC55_RS20295;product=type VI secretion system baseplate subunit TssK;protein_id=WP_228329648.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4312623 4313231 . - . ID=gene-LLC55_RS20300;Name=tssJ;gbkey=Gene;gene=tssJ;gene_biotype=protein_coding;locus_tag=LLC55_RS20300;old_locus_tag=LLC55_20320 NZ_CP086200.1 Protein Homology CDS 4312623 4313231 . - 0 ID=cds-WP_044750743.1;Parent=gene-LLC55_RS20300;Dbxref=Genbank:WP_044750743.1;Name=WP_044750743.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssJ;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302181.1;locus_tag=LLC55_RS20300;product=type VI secretion system lipoprotein TssJ;protein_id=WP_044750743.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4313531 4314106 . + . ID=gene-LLC55_RS20305;Name=LLC55_RS20305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20305;old_locus_tag=LLC55_20325 NZ_CP086200.1 Protein Homology CDS 4313531 4314106 . + 0 ID=cds-WP_228329649.1;Parent=gene-LLC55_RS20305;Dbxref=Genbank:WP_228329649.1;Name=WP_228329649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017356834.1;locus_tag=LLC55_RS20305;product=hypothetical protein;protein_id=WP_228329649.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4314153 4314653 . + . ID=gene-LLC55_RS20310;Name=tssB;gbkey=Gene;gene=tssB;gene_biotype=protein_coding;locus_tag=LLC55_RS20310;old_locus_tag=LLC55_20330 NZ_CP086200.1 Protein Homology CDS 4314153 4314653 . + 0 ID=cds-WP_003467601.1;Parent=gene-LLC55_RS20310;Dbxref=Genbank:WP_003467601.1;Name=WP_003467601.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssB;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304314.1;locus_tag=LLC55_RS20310;product=type VI secretion system contractile sheath small subunit;protein_id=WP_003467601.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4314657 4316153 . + . ID=gene-LLC55_RS20315;Name=tssC;gbkey=Gene;gene=tssC;gene_biotype=protein_coding;locus_tag=LLC55_RS20315;old_locus_tag=LLC55_20335 NZ_CP086200.1 Protein Homology CDS 4314657 4316153 . + 0 ID=cds-WP_014502419.1;Parent=gene-LLC55_RS20315;Dbxref=Genbank:WP_014502419.1;Name=WP_014502419.1;Ontology_term=GO:0033103,GO:0003674,GO:0033104;gbkey=CDS;gene=tssC;go_component=type VI protein secretion system complex|0033104||IEA;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302184.1;locus_tag=LLC55_RS20315;product=type VI secretion system contractile sheath large subunit;protein_id=WP_014502419.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4316295 4316792 . + . ID=gene-LLC55_RS20320;Name=LLC55_RS20320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20320;old_locus_tag=LLC55_20340 NZ_CP086200.1 Protein Homology CDS 4316295 4316792 . + 0 ID=cds-WP_003467612.1;Parent=gene-LLC55_RS20320;Dbxref=Genbank:WP_003467612.1;Name=WP_003467612.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006465355.1;locus_tag=LLC55_RS20320;product=type VI secretion system tube protein Hcp;protein_id=WP_003467612.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4316940 4317428 . + . ID=gene-LLC55_RS20325;Name=tssE;gbkey=Gene;gene=tssE;gene_biotype=protein_coding;locus_tag=LLC55_RS20325;old_locus_tag=LLC55_20345 NZ_CP086200.1 Protein Homology CDS 4316940 4317428 . + 0 ID=cds-WP_011259942.1;Parent=gene-LLC55_RS20325;Dbxref=Genbank:WP_011259942.1;Name=WP_011259942.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssE;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302186.1;locus_tag=LLC55_RS20325;product=type VI secretion system baseplate subunit TssE;protein_id=WP_011259942.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4317431 4319266 . + . ID=gene-LLC55_RS20330;Name=tssF;gbkey=Gene;gene=tssF;gene_biotype=protein_coding;locus_tag=LLC55_RS20330;old_locus_tag=LLC55_20350 NZ_CP086200.1 Protein Homology CDS 4317431 4319266 . + 0 ID=cds-WP_014502420.1;Parent=gene-LLC55_RS20330;Dbxref=Genbank:WP_014502420.1;Name=WP_014502420.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssF;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812662.1;locus_tag=LLC55_RS20330;product=type VI secretion system baseplate subunit TssF;protein_id=WP_014502420.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4319230 4320321 . + . ID=gene-LLC55_RS20335;Name=tssG;gbkey=Gene;gene=tssG;gene_biotype=protein_coding;locus_tag=LLC55_RS20335;old_locus_tag=LLC55_20355 NZ_CP086200.1 Protein Homology CDS 4319230 4320321 . + 0 ID=cds-WP_014502421.1;Parent=gene-LLC55_RS20335;Dbxref=Genbank:WP_014502421.1;Name=WP_014502421.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssG;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302188.1;locus_tag=LLC55_RS20335;product=type VI secretion system baseplate subunit TssG;protein_id=WP_014502421.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4320407 4323139 . + . ID=gene-LLC55_RS20340;Name=tssH;gbkey=Gene;gene=tssH;gene_biotype=protein_coding;locus_tag=LLC55_RS20340;old_locus_tag=LLC55_20360 NZ_CP086200.1 Protein Homology CDS 4320407 4323139 . + 0 ID=cds-WP_075242256.1;Parent=gene-LLC55_RS20340;Dbxref=Genbank:WP_075242256.1;Name=WP_075242256.1;Ontology_term=GO:0033103,GO:0016887,GO:0033104;gbkey=CDS;gene=tssH;go_component=type VI protein secretion system complex|0033104||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445669.1;locus_tag=LLC55_RS20340;product=type VI secretion system ATPase TssH;protein_id=WP_075242256.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4323170 4323523 . + . ID=gene-LLC55_RS20345;Name=LLC55_RS20345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20345;old_locus_tag=LLC55_20365 NZ_CP086200.1 Protein Homology CDS 4323170 4323523 . + 0 ID=cds-WP_014502423.1;Parent=gene-LLC55_RS20345;Dbxref=Genbank:WP_014502423.1;Name=WP_014502423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303308.1;locus_tag=LLC55_RS20345;product=hypothetical protein;protein_id=WP_014502423.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4323616 4326375 . + . ID=gene-LLC55_RS20350;Name=LLC55_RS20350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20350;old_locus_tag=LLC55_20370 NZ_CP086200.1 Protein Homology CDS 4323616 4326375 . + 0 ID=cds-WP_075242942.1;Parent=gene-LLC55_RS20350;Dbxref=Genbank:WP_075242942.1;Name=WP_075242942.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503453.1;locus_tag=LLC55_RS20350;product=type VI secretion system Vgr family protein;protein_id=WP_075242942.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4326566 4327222 . + . ID=gene-LLC55_RS20355;Name=LLC55_RS20355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20355;old_locus_tag=LLC55_20375 NZ_CP086200.1 Protein Homology CDS 4326566 4327222 . + 0 ID=cds-WP_228329650.1;Parent=gene-LLC55_RS20355;Dbxref=Genbank:WP_228329650.1;Name=WP_228329650.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024894.2;locus_tag=LLC55_RS20355;product=DUF4123 domain-containing protein;protein_id=WP_228329650.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4327241 4330099 . + . ID=gene-LLC55_RS20360;Name=LLC55_RS20360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20360;old_locus_tag=LLC55_20380 NZ_CP086200.1 Protein Homology CDS 4327241 4330099 . + 0 ID=cds-WP_228329651.1;Parent=gene-LLC55_RS20360;Dbxref=Genbank:WP_228329651.1;Name=WP_228329651.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445666.1;locus_tag=LLC55_RS20360;product=hypothetical protein;protein_id=WP_228329651.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4330108 4331139 . + . ID=gene-LLC55_RS20365;Name=LLC55_RS20365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20365;old_locus_tag=LLC55_20385 NZ_CP086200.1 Protein Homology CDS 4330108 4331139 . + 0 ID=cds-WP_069959960.1;Parent=gene-LLC55_RS20365;Dbxref=Genbank:WP_069959960.1;Name=WP_069959960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409196.1;locus_tag=LLC55_RS20365;product=hypothetical protein;protein_id=WP_069959960.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4331141 4333639 . + . ID=gene-LLC55_RS20370;Name=LLC55_RS20370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20370;old_locus_tag=LLC55_20390 NZ_CP086200.1 Protein Homology CDS 4331141 4333639 . + 0 ID=cds-WP_228329652.1;Parent=gene-LLC55_RS20370;Dbxref=Genbank:WP_228329652.1;Name=WP_228329652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409199.1;locus_tag=LLC55_RS20370;product=hypothetical protein;protein_id=WP_228329652.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4333643 4334668 . + . ID=gene-LLC55_RS20375;Name=LLC55_RS20375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20375;old_locus_tag=LLC55_20395 NZ_CP086200.1 Protein Homology CDS 4333643 4334668 . + 0 ID=cds-WP_228329653.1;Parent=gene-LLC55_RS20375;Dbxref=Genbank:WP_228329653.1;Name=WP_228329653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409196.1;locus_tag=LLC55_RS20375;product=hypothetical protein;protein_id=WP_228329653.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4334670 4336523 . + . ID=gene-LLC55_RS20380;Name=LLC55_RS20380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20380;old_locus_tag=LLC55_20400 NZ_CP086200.1 GeneMarkS-2+ CDS 4334670 4336523 . + 0 ID=cds-WP_228329654.1;Parent=gene-LLC55_RS20380;Dbxref=Genbank:WP_228329654.1;Name=WP_228329654.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20380;product=hypothetical protein;protein_id=WP_228329654.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4336535 4337551 . + . ID=gene-LLC55_RS20385;Name=LLC55_RS20385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20385;old_locus_tag=LLC55_20405 NZ_CP086200.1 Protein Homology CDS 4336535 4337551 . + 0 ID=cds-WP_069964582.1;Parent=gene-LLC55_RS20385;Dbxref=Genbank:WP_069964582.1;Name=WP_069964582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409196.1;locus_tag=LLC55_RS20385;product=hypothetical protein;protein_id=WP_069964582.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4338073 4338600 . - . ID=gene-LLC55_RS20390;Name=LLC55_RS20390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20390;old_locus_tag=LLC55_20410;partial=true;pseudo=true;start_range=.,4338073 NZ_CP086200.1 Protein Homology CDS 4338073 4338600 . - 0 ID=cds-LLC55_RS20390;Parent=gene-LLC55_RS20390;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503453.1;locus_tag=LLC55_RS20390;partial=true;product=type VI secretion system Vgr family protein;pseudo=true;start_range=.,4338073;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4338757 4338882 . + . ID=gene-LLC55_RS20395;Name=LLC55_RS20395;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20395;old_locus_tag=LLC55_20415;partial=true;pseudo=true;start_range=.,4338757 NZ_CP086200.1 Protein Homology CDS 4338757 4338882 . + 0 ID=cds-LLC55_RS20395;Parent=gene-LLC55_RS20395;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611589.1;locus_tag=LLC55_RS20395;partial=true;product=integrase core domain-containing protein;pseudo=true;start_range=.,4338757;transl_table=11 NZ_CP086200.1 RefSeq gene 4338944 4339020 . + . ID=gene-LLC55_RS20400;Name=LLC55_RS20400;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS20400;old_locus_tag=LLC55_20420 NZ_CP086200.1 cmsearch ncRNA 4338944 4339020 . + . ID=rna-LLC55_RS20400;Parent=gene-LLC55_RS20400;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20400;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4338944 4339020 . + . ID=exon-LLC55_RS20400-1;Parent=rna-LLC55_RS20400;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20400;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4339323 4339586 . + . ID=gene-LLC55_RS20405;Name=LLC55_RS20405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20405;old_locus_tag=LLC55_20425 NZ_CP086200.1 Protein Homology CDS 4339323 4339586 . + 0 ID=cds-WP_011259930.1;Parent=gene-LLC55_RS20405;Dbxref=Genbank:WP_011259930.1;Name=WP_011259930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003479855.1;locus_tag=LLC55_RS20405;product=hypothetical protein;protein_id=WP_011259930.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4339593 4339901 . + . ID=gene-LLC55_RS20410;Name=LLC55_RS20410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20410;old_locus_tag=LLC55_20430 NZ_CP086200.1 Protein Homology CDS 4339593 4339901 . + 0 ID=cds-WP_011259929.1;Parent=gene-LLC55_RS20410;Dbxref=Genbank:WP_011259929.1;Name=WP_011259929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259929.1;locus_tag=LLC55_RS20410;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_011259929.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4339935 4341401 . - . ID=gene-LLC55_RS20415;Name=LLC55_RS20415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20415;old_locus_tag=LLC55_20435 NZ_CP086200.1 Protein Homology CDS 4339935 4341401 . - 0 ID=cds-WP_228329655.1;Parent=gene-LLC55_RS20415;Dbxref=Genbank:WP_228329655.1;Name=WP_228329655.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376176.1;locus_tag=LLC55_RS20415;product=restriction endonuclease subunit S;protein_id=WP_228329655.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4341394 4342938 . - . ID=gene-LLC55_RS20420;Name=LLC55_RS20420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20420;old_locus_tag=LLC55_20440 NZ_CP086200.1 Protein Homology CDS 4341394 4342938 . - 0 ID=cds-WP_069964581.1;Parent=gene-LLC55_RS20420;Dbxref=Genbank:WP_069964581.1;Name=WP_069964581.1;Ontology_term=GO:0006306,GO:0003677,GO:0008170;gbkey=CDS;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;go_process=DNA methylation|0006306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502302.1;locus_tag=LLC55_RS20420;product=N-6 DNA methylase;protein_id=WP_069964581.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4342985 4343983 . - . ID=gene-LLC55_RS20425;Name=LLC55_RS20425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20425;old_locus_tag=LLC55_20445 NZ_CP086200.1 Protein Homology CDS 4342985 4343983 . - 0 ID=cds-WP_069964580.1;Parent=gene-LLC55_RS20425;Dbxref=Genbank:WP_069964580.1;Name=WP_069964580.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409184.1;locus_tag=LLC55_RS20425;product=Abi family protein;protein_id=WP_069964580.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4344123 4347596 . - . ID=gene-LLC55_RS20430;Name=hsdR;gbkey=Gene;gene=hsdR;gene_biotype=protein_coding;locus_tag=LLC55_RS20430;old_locus_tag=LLC55_20450 NZ_CP086200.1 Protein Homology CDS 4344123 4347596 . - 0 ID=cds-WP_069959957.1;Parent=gene-LLC55_RS20430;Dbxref=Genbank:WP_069959957.1;Name=WP_069959957.1;gbkey=CDS;gene=hsdR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930478.1;locus_tag=LLC55_RS20430;product=type I restriction-modification system endonuclease;protein_id=WP_069959957.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4347906 4348170 . + . ID=gene-LLC55_RS20435;Name=LLC55_RS20435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20435;old_locus_tag=LLC55_20455;pseudo=true NZ_CP086200.1 Protein Homology CDS 4347906 4348170 . + 0 ID=cds-LLC55_RS20435;Parent=gene-LLC55_RS20435;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003479855.1;locus_tag=LLC55_RS20435;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4348177 4348485 . + . ID=gene-LLC55_RS20440;Name=LLC55_RS20440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20440;old_locus_tag=LLC55_20460 NZ_CP086200.1 Protein Homology CDS 4348177 4348485 . + 0 ID=cds-WP_044756557.1;Parent=gene-LLC55_RS20440;Dbxref=Genbank:WP_044756557.1;Name=WP_044756557.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903357.1;locus_tag=LLC55_RS20440;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_044756557.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4348466 4349530 . + . ID=gene-LLC55_RS20445;Name=LLC55_RS20445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20445;old_locus_tag=LLC55_20465 NZ_CP086200.1 Protein Homology CDS 4348466 4349530 . + 0 ID=cds-WP_011259922.1;Parent=gene-LLC55_RS20445;Dbxref=Genbank:WP_011259922.1;Name=WP_011259922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903356.1;locus_tag=LLC55_RS20445;product=restriction endonuclease;protein_id=WP_011259922.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4349893 4351362 . + . ID=gene-LLC55_RS20450;Name=LLC55_RS20450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20450;old_locus_tag=LLC55_20470 NZ_CP086200.1 Protein Homology CDS 4349893 4351362 . + 0 ID=cds-WP_229001947.1;Parent=gene-LLC55_RS20450;Dbxref=Genbank:WP_229001947.1;Name=WP_229001947.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019397174.1;locus_tag=LLC55_RS20450;product=class I SAM-dependent DNA methyltransferase;protein_id=WP_229001947.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4351373 4351807 . + . ID=gene-LLC55_RS20455;Name=LLC55_RS20455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20455;old_locus_tag=LLC55_20475 NZ_CP086200.1 Protein Homology CDS 4351373 4351807 . + 0 ID=cds-WP_011409179.1;Parent=gene-LLC55_RS20455;Dbxref=Genbank:WP_011409179.1;Name=WP_011409179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409179.1;locus_tag=LLC55_RS20455;product=nucleotidyltransferase substrate binding protein;protein_id=WP_011409179.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4351800 4353311 . + . ID=gene-LLC55_RS20460;Name=LLC55_RS20460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20460;old_locus_tag=LLC55_20480 NZ_CP086200.1 Protein Homology CDS 4351800 4353311 . + 0 ID=cds-WP_075242182.1;Parent=gene-LLC55_RS20460;Dbxref=Genbank:WP_075242182.1;Name=WP_075242182.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903352.1;locus_tag=LLC55_RS20460;product=restriction endonuclease subunit S;protein_id=WP_075242182.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4353308 4354054 . + . ID=gene-LLC55_RS20465;Name=LLC55_RS20465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20465;old_locus_tag=LLC55_20485 NZ_CP086200.1 Protein Homology CDS 4353308 4354054 . + 0 ID=cds-WP_069959956.1;Parent=gene-LLC55_RS20465;Dbxref=Genbank:WP_069959956.1;Name=WP_069959956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409175.1;locus_tag=LLC55_RS20465;product=abortive infection family protein;protein_id=WP_069959956.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4354054 4354728 . + . ID=gene-LLC55_RS20470;Name=LLC55_RS20470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20470;old_locus_tag=LLC55_20490 NZ_CP086200.1 Protein Homology CDS 4354054 4354728 . + 0 ID=cds-WP_069963885.1;Parent=gene-LLC55_RS20470;Dbxref=Genbank:WP_069963885.1;Name=WP_069963885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903350.1;locus_tag=LLC55_RS20470;product=hypothetical protein;protein_id=WP_069963885.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4354728 4357907 . + . ID=gene-LLC55_RS20475;Name=LLC55_RS20475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20475;old_locus_tag=LLC55_20495 NZ_CP086200.1 Protein Homology CDS 4354728 4357907 . + 0 ID=cds-WP_069964578.1;Parent=gene-LLC55_RS20475;Dbxref=Genbank:WP_069964578.1;Name=WP_069964578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409173.1;locus_tag=LLC55_RS20475;product=type I restriction endonuclease subunit R;protein_id=WP_069964578.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4358186 4358452 . + . ID=gene-LLC55_RS20480;Name=LLC55_RS20480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20480;old_locus_tag=LLC55_20500 NZ_CP086200.1 Protein Homology CDS 4358186 4358452 . + 0 ID=cds-WP_011409172.1;Parent=gene-LLC55_RS20480;Dbxref=Genbank:WP_011409172.1;Name=WP_011409172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502313.1;locus_tag=LLC55_RS20480;product=hypothetical protein;protein_id=WP_011409172.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4358701 4360275 . - . ID=gene-LLC55_RS20485;Name=LLC55_RS20485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20485;old_locus_tag=LLC55_20505 NZ_CP086200.1 Protein Homology CDS 4358701 4360275 . - 0 ID=cds-WP_041182229.1;Parent=gene-LLC55_RS20485;Dbxref=Genbank:WP_041182229.1;Name=WP_041182229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161779.1;locus_tag=LLC55_RS20485;product=XopAU family type III secretion system effector serine/threonine kinase;protein_id=WP_041182229.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4360684 4361460 . + . ID=gene-LLC55_RS20490;Name=LLC55_RS20490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20490;old_locus_tag=LLC55_20510 NZ_CP086200.1 Protein Homology CDS 4360684 4361460 . + 0 ID=cds-WP_069963882.1;Parent=gene-LLC55_RS20490;Dbxref=Genbank:WP_069963882.1;Name=WP_069963882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303846.1;locus_tag=LLC55_RS20490;product=type III secretion system effector XopAV;protein_id=WP_069963882.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4361789 4362544 . + . ID=gene-LLC55_RS20495;Name=LLC55_RS20495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20495;old_locus_tag=LLC55_20515 NZ_CP086200.1 Protein Homology CDS 4361789 4362544 . + 0 ID=cds-WP_027704159.1;Parent=gene-LLC55_RS20495;Dbxref=Genbank:WP_027704159.1;Name=WP_027704159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157921.1;locus_tag=LLC55_RS20495;product=type III secretion system effector XopAV;protein_id=WP_027704159.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4362605 4363234 . - . ID=gene-LLC55_RS20500;Name=LLC55_RS20500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20500;old_locus_tag=LLC55_20520 NZ_CP086200.1 Protein Homology CDS 4362605 4363234 . - 0 ID=cds-WP_011409168.1;Parent=gene-LLC55_RS20500;Dbxref=Genbank:WP_011409168.1;Name=WP_011409168.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903342.1;locus_tag=LLC55_RS20500;product=TetR/AcrR family transcriptional regulator;protein_id=WP_011409168.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4363449 4364228 . + . ID=gene-LLC55_RS20505;Name=LLC55_RS20505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20505;old_locus_tag=LLC55_20525 NZ_CP086200.1 Protein Homology CDS 4363449 4364228 . + 0 ID=cds-WP_011409167.1;Parent=gene-LLC55_RS20505;Dbxref=Genbank:WP_011409167.1;Name=WP_011409167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490632.1;locus_tag=LLC55_RS20505;product=histidine phosphatase family protein;protein_id=WP_011409167.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4364228 4365097 . + . ID=gene-LLC55_RS20510;Name=LLC55_RS20510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20510;old_locus_tag=LLC55_20530;pseudo=true NZ_CP086200.1 Protein Homology CDS 4364228 4365097 . + 0 ID=cds-LLC55_RS20510;Parent=gene-LLC55_RS20510;Note=internal stop;Ontology_term=GO:0052855;gbkey=CDS;go_function=ADP-dependent NAD(P)H-hydrate dehydratase activity|0052855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849374.1;locus_tag=LLC55_RS20510;product=NAD(P)H-hydrate dehydratase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4365423 4366391 . - . ID=gene-LLC55_RS20515;Name=LLC55_RS20515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20515;old_locus_tag=LLC55_20535 NZ_CP086200.1 Protein Homology CDS 4365423 4366391 . - 0 ID=cds-WP_011258529.1-3;Parent=gene-LLC55_RS20515;Dbxref=Genbank:WP_011258529.1;Name=WP_011258529.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS20515;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258529.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4366465 4367263 . - . ID=gene-LLC55_RS20520;Name=LLC55_RS20520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20520;old_locus_tag=LLC55_20540 NZ_CP086200.1 Protein Homology CDS 4366992 4367263 . - 0 ID=cds-WP_094187763.1-5;Parent=gene-LLC55_RS20520;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS20520;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4366465 4366993 . - 1 ID=cds-WP_094187763.1-5;Parent=gene-LLC55_RS20520;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS20520;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4367408 4367560 . + . ID=gene-LLC55_RS20525;Name=LLC55_RS20525;end_range=4367560,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20525;old_locus_tag=LLC55_20545;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4367408 4367560 . + 0 ID=cds-LLC55_RS20525;Parent=gene-LLC55_RS20525;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4367560,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157900.1;locus_tag=LLC55_RS20525;partial=true;product=DNA-binding protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4367755 4368180 . - . ID=gene-LLC55_RS20530;Name=LLC55_RS20530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20530;old_locus_tag=LLC55_20550 NZ_CP086200.1 Protein Homology CDS 4367755 4368180 . - 0 ID=cds-WP_011409165.1;Parent=gene-LLC55_RS20530;Dbxref=Genbank:WP_011409165.1;Name=WP_011409165.1;Ontology_term=GO:0016301;gbkey=CDS;go_function=kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157899.1;locus_tag=LLC55_RS20530;product=type II toxin-antitoxin system death-on-curing family toxin;protein_id=WP_011409165.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4368190 4368411 . - . ID=gene-LLC55_RS20535;Name=LLC55_RS20535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20535;old_locus_tag=LLC55_20555 NZ_CP086200.1 Protein Homology CDS 4368190 4368411 . - 0 ID=cds-WP_011259911.1;Parent=gene-LLC55_RS20535;Dbxref=Genbank:WP_011259911.1;Name=WP_011259911.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302153.1;locus_tag=LLC55_RS20535;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_011259911.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4368561 4369166 . + . ID=gene-LLC55_RS20540;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=LLC55_RS20540;old_locus_tag=LLC55_20560 NZ_CP086200.1 Protein Homology CDS 4368561 4369166 . + 0 ID=cds-WP_011409164.1;Parent=gene-LLC55_RS20540;Dbxref=Genbank:WP_011409164.1;Name=WP_011409164.1;Ontology_term=GO:0006282,GO:0006355,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=regulation of DNA repair|0006282||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971824.1;locus_tag=LLC55_RS20540;product=transcriptional repressor LexA;protein_id=WP_011409164.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4369168 4369818 . + . ID=gene-LLC55_RS20545;Name=imuA;gbkey=Gene;gene=imuA;gene_biotype=protein_coding;locus_tag=LLC55_RS20545;old_locus_tag=LLC55_20565 NZ_CP086200.1 Protein Homology CDS 4369168 4369818 . + 0 ID=cds-WP_011259909.1;Parent=gene-LLC55_RS20545;Dbxref=Genbank:WP_011259909.1;Name=WP_011259909.1;Ontology_term=GO:0009432,GO:0051782;gbkey=CDS;gene=imuA;go_process=SOS response|0009432||IEA,negative regulation of cell division|0051782||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116014.1;locus_tag=LLC55_RS20545;product=translesion DNA synthesis-associated protein ImuA;protein_id=WP_011259909.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4369828 4371246 . + . ID=gene-LLC55_RS20550;Name=LLC55_RS20550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20550;old_locus_tag=LLC55_20570 NZ_CP086200.1 Protein Homology CDS 4369828 4371246 . + 0 ID=cds-WP_011259908.1;Parent=gene-LLC55_RS20550;Dbxref=Genbank:WP_011259908.1;Name=WP_011259908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502328.1;locus_tag=LLC55_RS20550;product=DNA polymerase Y family protein;protein_id=WP_011259908.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4371259 4371441 . + . ID=gene-LLC55_RS20555;Name=LLC55_RS20555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20555;old_locus_tag=LLC55_20575 NZ_CP086200.1 Protein Homology CDS 4371259 4371441 . + 0 ID=cds-WP_075239010.1;Parent=gene-LLC55_RS20555;Dbxref=Genbank:WP_075239010.1;Name=WP_075239010.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157895.1;locus_tag=LLC55_RS20555;product=hypothetical protein;protein_id=WP_075239010.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4371428 4374679 . + . ID=gene-LLC55_RS20560;Name=LLC55_RS20560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20560;old_locus_tag=LLC55_20580 NZ_CP086200.1 Protein Homology CDS 4371428 4374679 . + 0 ID=cds-WP_011259907.1;Parent=gene-LLC55_RS20560;Dbxref=Genbank:WP_011259907.1;Name=WP_011259907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445640.1;locus_tag=LLC55_RS20560;product=error-prone DNA polymerase;protein_id=WP_011259907.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4374990 4375808 . + . ID=gene-LLC55_RS20565;Name=LLC55_RS20565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20565;old_locus_tag=LLC55_20585 NZ_CP086200.1 Protein Homology CDS 4374990 4375808 . + 0 ID=cds-WP_027704156.1;Parent=gene-LLC55_RS20565;Dbxref=Genbank:WP_027704156.1;Name=WP_027704156.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814392.1;locus_tag=LLC55_RS20565;product=HDOD domain-containing protein;protein_id=WP_027704156.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4375921 4377318 . - . ID=gene-LLC55_RS20570;Name=LLC55_RS20570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20570;old_locus_tag=LLC55_20590 NZ_CP086200.1 Protein Homology CDS 4375921 4377318 . - 0 ID=cds-WP_011259904.1;Parent=gene-LLC55_RS20570;Dbxref=Genbank:WP_011259904.1;Name=WP_011259904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489555.1;locus_tag=LLC55_RS20570;product=trypsin-like peptidase domain-containing protein;protein_id=WP_011259904.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4377747 4379717 . + . ID=gene-LLC55_RS20575;Name=LLC55_RS20575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20575;old_locus_tag=LLC55_20595 NZ_CP086200.1 Protein Homology CDS 4377747 4379717 . + 0 ID=cds-WP_011259903.1;Parent=gene-LLC55_RS20575;Dbxref=Genbank:WP_011259903.1;Name=WP_011259903.1;Ontology_term=GO:0006857,GO:0035673,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=oligopeptide transmembrane transporter activity|0035673||IEA;go_process=oligopeptide transport|0006857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346708.1;locus_tag=LLC55_RS20575;product=oligopeptide transporter%2C OPT family;protein_id=WP_011259903.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4380042 4381010 . + . ID=gene-LLC55_RS20580;Name=LLC55_RS20580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20580;old_locus_tag=LLC55_20600 NZ_CP086200.1 Protein Homology CDS 4380042 4381010 . + 0 ID=cds-WP_011407175.1-4;Parent=gene-LLC55_RS20580;Dbxref=Genbank:WP_011407175.1;Name=WP_011407175.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS20580;product=IS5-like element ISXo1 family transposase;protein_id=WP_011407175.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4381312 4381388 . + . ID=gene-LLC55_RS20585;Name=LLC55_RS20585;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS20585;old_locus_tag=LLC55_20605 NZ_CP086200.1 cmsearch ncRNA 4381312 4381388 . + . ID=rna-LLC55_RS20585;Parent=gene-LLC55_RS20585;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20585;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4381312 4381388 . + . ID=exon-LLC55_RS20585-1;Parent=rna-LLC55_RS20585;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20585;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4382002 4382847 . + . ID=gene-LLC55_RS20590;Name=LLC55_RS20590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20590;old_locus_tag=LLC55_20610 NZ_CP086200.1 Protein Homology CDS 4382002 4382847 . + 0 ID=cds-WP_027704154.1;Parent=gene-LLC55_RS20590;Dbxref=Genbank:WP_027704154.1;Name=WP_027704154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158565.1;locus_tag=LLC55_RS20590;product=transporter;protein_id=WP_027704154.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4382909 4382980 . + . ID=gene-LLC55_RS20595;Name=LLC55_RS20595;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS20595;old_locus_tag=LLC55_20615 NZ_CP086200.1 cmsearch ncRNA 4382909 4382980 . + . ID=rna-LLC55_RS20595;Parent=gene-LLC55_RS20595;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20595;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4382909 4382980 . + . ID=exon-LLC55_RS20595-1;Parent=rna-LLC55_RS20595;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20595;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4383114 4385234 . + . ID=gene-LLC55_RS20600;Name=LLC55_RS20600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20600;old_locus_tag=LLC55_20620 NZ_CP086200.1 Protein Homology CDS 4383114 4385234 . + 0 ID=cds-WP_027704153.1;Parent=gene-LLC55_RS20600;Dbxref=Genbank:WP_027704153.1;Name=WP_027704153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169463.1;locus_tag=LLC55_RS20600;product=S9 family peptidase;protein_id=WP_027704153.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4385308 4386207 . - . ID=gene-LLC55_RS20605;Name=LLC55_RS20605;end_range=4386207,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20605;old_locus_tag=LLC55_20625;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4385308 4386207 . - 0 ID=cds-LLC55_RS20605;Parent=gene-LLC55_RS20605;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=4386207,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS20605;partial=true;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4386271 4387519 . + . ID=gene-LLC55_RS20610;Name=LLC55_RS20610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20610;old_locus_tag=LLC55_20630;pseudo=true NZ_CP086200.1 Protein Homology CDS 4386271 4387519 . + 0 ID=cds-LLC55_RS20610;Parent=gene-LLC55_RS20610;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS20610;product=ISL3-like element ISXoo13 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4387526 4388017 . - . ID=gene-LLC55_RS20615;Name=LLC55_RS20615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20615;old_locus_tag=LLC55_20635;partial=true;pseudo=true;start_range=.,4387526 NZ_CP086200.1 Protein Homology CDS 4387526 4388017 . - 0 ID=cds-LLC55_RS20615;Parent=gene-LLC55_RS20615;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS20615;partial=true;product=transposase;pseudo=true;start_range=.,4387526;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4388099 4388511 . + . ID=gene-LLC55_RS20620;Name=LLC55_RS20620;end_range=4388511,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20620;old_locus_tag=LLC55_20640;partial=true;pseudo=true;start_range=.,4388099 NZ_CP086200.1 Protein Homology CDS 4388099 4388511 . + 0 ID=cds-LLC55_RS20620;Parent=gene-LLC55_RS20620;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0004803;end_range=4388511,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259790.1;locus_tag=LLC55_RS20620;partial=true;product=IS1595 family transposase;pseudo=true;start_range=.,4388099;transl_table=11 NZ_CP086200.1 RefSeq gene 4388681 4389142 . + . ID=gene-LLC55_RS20625;Name=LLC55_RS20625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20625;old_locus_tag=LLC55_20645 NZ_CP086200.1 Protein Homology CDS 4388681 4389142 . + 0 ID=cds-WP_011409154.1;Parent=gene-LLC55_RS20625;Dbxref=Genbank:WP_011409154.1;Name=WP_011409154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157885.1;locus_tag=LLC55_RS20625;product=hypothetical protein;protein_id=WP_011409154.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4389274 4389999 . + . ID=gene-LLC55_RS20630;Name=LLC55_RS20630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20630;old_locus_tag=LLC55_20650 NZ_CP086200.1 Protein Homology CDS 4389274 4389999 . + 0 ID=cds-WP_011259895.1;Parent=gene-LLC55_RS20630;Dbxref=Genbank:WP_011259895.1;Name=WP_011259895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371630.1;locus_tag=LLC55_RS20630;product=AraC family transcriptional regulator;protein_id=WP_011259895.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4390149 4390361 . - . ID=gene-LLC55_RS20635;Name=LLC55_RS20635;end_range=4390361,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20635;old_locus_tag=LLC55_20655;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4390149 4390361 . - 0 ID=cds-LLC55_RS20635;Parent=gene-LLC55_RS20635;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4390361,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS20635;partial=true;product=IS1595 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4390383 4391417 . - . ID=gene-LLC55_RS20640;Name=LLC55_RS20640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20640;old_locus_tag=LLC55_20660 NZ_CP086200.1 Protein Homology CDS 4390383 4391417 . - 0 ID=cds-WP_011407587.1-3;Parent=gene-LLC55_RS20640;Dbxref=Genbank:WP_011407587.1;Name=WP_011407587.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611268.1;locus_tag=LLC55_RS20640;product=IS630 family transposase;protein_id=WP_011407587.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4391472 4392230 . - . ID=gene-LLC55_RS20645;Name=LLC55_RS20645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20645;old_locus_tag=LLC55_20665;partial=true;pseudo=true;start_range=.,4391472 NZ_CP086200.1 Protein Homology CDS 4391472 4392230 . - 0 ID=cds-LLC55_RS20645;Parent=gene-LLC55_RS20645;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS20645;partial=true;product=IS1595-like element ISXo5 family transposase;pseudo=true;start_range=.,4391472;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4392438 4393124 . - . ID=gene-LLC55_RS20650;Name=LLC55_RS20650;end_range=4393124,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20650;old_locus_tag=LLC55_20670;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4392438 4393124 . - 0 ID=cds-LLC55_RS20650;Parent=gene-LLC55_RS20650;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=4393124,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS20650;partial=true;product=IS5-like element ISXo1 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4393145 4394521 . - . ID=gene-LLC55_RS20655;Name=LLC55_RS20655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20655;old_locus_tag=LLC55_20675 NZ_CP086200.1 Protein Homology CDS 4393145 4394521 . - 0 ID=cds-WP_069964507.1-6;Parent=gene-LLC55_RS20655;Dbxref=Genbank:WP_069964507.1;Name=WP_069964507.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041183487.1;locus_tag=LLC55_RS20655;product=IS5-like element ISXo4 family transposase;protein_id=WP_069964507.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4394630 4394926 . - . ID=gene-LLC55_RS20660;Name=LLC55_RS20660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20660;old_locus_tag=LLC55_20680;partial=true;pseudo=true;start_range=.,4394630 NZ_CP086200.1 Protein Homology CDS 4394630 4394926 . - 0 ID=cds-LLC55_RS20660;Parent=gene-LLC55_RS20660;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS20660;partial=true;product=transposase;pseudo=true;start_range=.,4394630;transl_table=11 NZ_CP086200.1 RefSeq gene 4395094 4395170 . + . ID=gene-LLC55_RS20665;Name=LLC55_RS20665;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS20665;old_locus_tag=LLC55_20685 NZ_CP086200.1 cmsearch ncRNA 4395094 4395170 . + . ID=rna-LLC55_RS20665;Parent=gene-LLC55_RS20665;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20665;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4395094 4395170 . + . ID=exon-LLC55_RS20665-1;Parent=rna-LLC55_RS20665;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20665;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4395689 4397830 . + . ID=gene-LLC55_RS20670;Name=LLC55_RS20670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20670;old_locus_tag=LLC55_20690 NZ_CP086200.1 Protein Homology CDS 4395689 4397830 . + 0 ID=cds-WP_042465136.1;Parent=gene-LLC55_RS20670;Dbxref=Genbank:WP_042465136.1;Name=WP_042465136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259894.1;locus_tag=LLC55_RS20670;product=type III secretion system effector protein XopP;protein_id=WP_042465136.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4398058 4399296 . - . ID=gene-LLC55_RS20675;Name=LLC55_RS20675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20675;old_locus_tag=LLC55_20695 NZ_CP086200.1 Protein Homology CDS 4398058 4399296 . - 0 ID=cds-WP_042465674.1;Parent=gene-LLC55_RS20675;Dbxref=Genbank:WP_042465674.1;Name=WP_042465674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154699.1;locus_tag=LLC55_RS20675;product=hypothetical protein;protein_id=WP_042465674.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4400122 4402227 . - . ID=gene-LLC55_RS20680;Name=LLC55_RS20680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20680;old_locus_tag=LLC55_20700 NZ_CP086200.1 Protein Homology CDS 4400122 4402227 . - 0 ID=cds-WP_011409150.1;Parent=gene-LLC55_RS20680;Dbxref=Genbank:WP_011409150.1;Name=WP_011409150.1;Ontology_term=GO:0004096,GO:0020037;gbkey=CDS;go_function=catalase activity|0004096||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154698.1;locus_tag=LLC55_RS20680;product=catalase;protein_id=WP_011409150.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4402445 4402733 . - . ID=gene-LLC55_RS20685;Name=LLC55_RS20685;end_range=4402733,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20685;old_locus_tag=LLC55_20705;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4402445 4402733 . - 0 ID=cds-LLC55_RS20685;Parent=gene-LLC55_RS20685;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4402733,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050780.1;locus_tag=LLC55_RS20685;partial=true;product=aldo/keto reductase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4402753 4403178 . - . ID=gene-LLC55_RS20690;Name=LLC55_RS20690;end_range=4403178,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20690;old_locus_tag=LLC55_20710;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4402753 4403178 . - 0 ID=cds-LLC55_RS20690;Parent=gene-LLC55_RS20690;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4403178,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409251.1;locus_tag=LLC55_RS20690;partial=true;product=DUF3396 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4403254 4404256 . + . ID=gene-LLC55_RS20695;Name=LLC55_RS20695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20695;old_locus_tag=LLC55_20715;pseudo=true NZ_CP086200.1 Protein Homology CDS 4403254 4404256 . + 0 ID=cds-LLC55_RS20695;Parent=gene-LLC55_RS20695;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445627.1;locus_tag=LLC55_RS20695;product=IS630 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4404394 4407249 . + . ID=gene-LLC55_RS20700;Name=LLC55_RS20700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20700;old_locus_tag=LLC55_20720 NZ_CP086200.1 Protein Homology CDS 4404394 4407249 . + 0 ID=cds-WP_075242204.1;Parent=gene-LLC55_RS20700;Dbxref=Genbank:WP_075242204.1;Name=WP_075242204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159178.1;locus_tag=LLC55_RS20700;product=DUF2339 domain-containing protein;protein_id=WP_075242204.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4407246 4408604 . + . ID=gene-LLC55_RS20705;Name=LLC55_RS20705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20705;old_locus_tag=LLC55_20725 NZ_CP086200.1 Protein Homology CDS 4407246 4408604 . + 0 ID=cds-WP_011409146.1;Parent=gene-LLC55_RS20705;Dbxref=Genbank:WP_011409146.1;Name=WP_011409146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155483.1;locus_tag=LLC55_RS20705;product=DUF3999 domain-containing protein;protein_id=WP_011409146.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4408938 4410113 . + . ID=gene-LLC55_RS20710;Name=LLC55_RS20710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20710;old_locus_tag=LLC55_20730 NZ_CP086200.1 Protein Homology CDS 4408938 4410113 . + 0 ID=cds-WP_011259887.1;Parent=gene-LLC55_RS20710;Dbxref=Genbank:WP_011259887.1;Name=WP_011259887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445624.1;locus_tag=LLC55_RS20710;product=phosphoglycerate kinase;protein_id=WP_011259887.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4410110 4410754 . + . ID=gene-LLC55_RS20715;Name=LLC55_RS20715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20715;old_locus_tag=LLC55_20735 NZ_CP086200.1 Protein Homology CDS 4410110 4410754 . + 0 ID=cds-WP_011259886.1;Parent=gene-LLC55_RS20715;Dbxref=Genbank:WP_011259886.1;Name=WP_011259886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300871.1;locus_tag=LLC55_RS20715;product=HAD family hydrolase;protein_id=WP_011259886.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4411011 4412477 . + . ID=gene-LLC55_RS20720;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=LLC55_RS20720;old_locus_tag=LLC55_20740 NZ_CP086200.1 Protein Homology CDS 4411011 4412477 . + 0 ID=cds-WP_011409145.1;Parent=gene-LLC55_RS20720;Dbxref=Genbank:WP_011409145.1;Name=WP_011409145.1;Ontology_term=GO:0006096,GO:0004743,GO:0005737;gbkey=CDS;gene=pyk;go_component=cytoplasm|0005737||IEA;go_function=pyruvate kinase activity|0004743||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487265.1;locus_tag=LLC55_RS20720;product=pyruvate kinase;protein_id=WP_011409145.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4413060 4414064 . + . ID=gene-LLC55_RS20725;Name=LLC55_RS20725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20725;old_locus_tag=LLC55_20745 NZ_CP086200.1 Protein Homology CDS 4413060 4414064 . + 0 ID=cds-WP_011259884.1;Parent=gene-LLC55_RS20725;Dbxref=Genbank:WP_011259884.1;Name=WP_011259884.1;Ontology_term=GO:0006096,GO:0004332;gbkey=CDS;go_function=fructose-bisphosphate aldolase activity|0004332||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437525.1;locus_tag=LLC55_RS20725;product=fructose-bisphosphate aldolase class I;protein_id=WP_011259884.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4414266 4414805 . - . ID=gene-LLC55_RS20730;Name=LLC55_RS20730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20730;old_locus_tag=LLC55_20750 NZ_CP086200.1 Protein Homology CDS 4414266 4414805 . - 0 ID=cds-WP_041182225.1;Parent=gene-LLC55_RS20730;Dbxref=Genbank:WP_041182225.1;Name=WP_041182225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300868.1;locus_tag=LLC55_RS20730;product=O-acetyl-ADP-ribose deacetylase;protein_id=WP_041182225.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4415001 4415507 . - . ID=gene-LLC55_RS20735;Name=LLC55_RS20735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20735;old_locus_tag=LLC55_20755 NZ_CP086200.1 Protein Homology CDS 4415001 4415507 . - 0 ID=cds-WP_011259882.1;Parent=gene-LLC55_RS20735;Dbxref=Genbank:WP_011259882.1;Name=WP_011259882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155478.1;locus_tag=LLC55_RS20735;product=isoprenylcysteine carboxylmethyltransferase family protein;protein_id=WP_011259882.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4415815 4416774 . - . ID=gene-LLC55_RS20740;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=LLC55_RS20740;old_locus_tag=LLC55_20760 NZ_CP086200.1 Protein Homology CDS 4415815 4416774 . - 0 ID=cds-WP_011259881.1;Parent=gene-LLC55_RS20740;Dbxref=Genbank:WP_011259881.1;Name=WP_011259881.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysK;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660021.1;locus_tag=LLC55_RS20740;product=cysteine synthase A;protein_id=WP_011259881.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4416791 4417996 . - . ID=gene-LLC55_RS20745;Name=cobA;gbkey=Gene;gene=cobA;gene_biotype=protein_coding;locus_tag=LLC55_RS20745;old_locus_tag=LLC55_20765 NZ_CP086200.1 Protein Homology CDS 4416791 4417996 . - 0 ID=cds-WP_075240596.1;Parent=gene-LLC55_RS20745;Dbxref=Genbank:WP_075240596.1;Name=WP_075240596.1;Ontology_term=GO:0019354,GO:0004851;gbkey=CDS;gene=cobA;go_function=uroporphyrin-III C-methyltransferase activity|0004851||IEA;go_process=siroheme biosynthetic process|0019354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922380.1;locus_tag=LLC55_RS20745;product=uroporphyrinogen-III C-methyltransferase;protein_id=WP_075240596.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4418164 4419147 . + . ID=gene-LLC55_RS20750;Name=LLC55_RS20750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20750;old_locus_tag=LLC55_20770 NZ_CP086200.1 Protein Homology CDS 4418164 4419147 . + 0 ID=cds-WP_044756573.1;Parent=gene-LLC55_RS20750;Dbxref=Genbank:WP_044756573.1;Name=WP_044756573.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477207.1;locus_tag=LLC55_RS20750;product=LysR family transcriptional regulator;protein_id=WP_044756573.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4419158 4419439 . + . ID=gene-LLC55_RS20755;Name=LLC55_RS20755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20755;old_locus_tag=LLC55_20775 NZ_CP086200.1 Protein Homology CDS 4419158 4419439 . + 0 ID=cds-WP_044756574.1;Parent=gene-LLC55_RS20755;Dbxref=Genbank:WP_044756574.1;Name=WP_044756574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850560.1;locus_tag=LLC55_RS20755;product=hypothetical protein;protein_id=WP_044756574.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4419455 4419529 . - . ID=gene-LLC55_RS20760;Name=LLC55_RS20760;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS20760;old_locus_tag=LLC55_20780 NZ_CP086200.1 cmsearch ncRNA 4419455 4419529 . - . ID=rna-LLC55_RS20760;Parent=gene-LLC55_RS20760;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20760;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4419455 4419529 . - . ID=exon-LLC55_RS20760-1;Parent=rna-LLC55_RS20760;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20760;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4419779 4419855 . + . ID=gene-LLC55_RS20765;Name=LLC55_RS20765;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS20765;old_locus_tag=LLC55_20785 NZ_CP086200.1 cmsearch ncRNA 4419779 4419855 . + . ID=rna-LLC55_RS20765;Parent=gene-LLC55_RS20765;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20765;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4419779 4419855 . + . ID=exon-LLC55_RS20765-1;Parent=rna-LLC55_RS20765;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20765;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4420332 4420405 . - . ID=gene-LLC55_RS20770;Name=LLC55_RS20770;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS20770;old_locus_tag=LLC55_20790 NZ_CP086200.1 cmsearch ncRNA 4420332 4420405 . - . ID=rna-LLC55_RS20770;Parent=gene-LLC55_RS20770;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20770;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4420332 4420405 . - . ID=exon-LLC55_RS20770-1;Parent=rna-LLC55_RS20770;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20770;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4420509 4421705 . - . ID=gene-LLC55_RS20775;Name=LLC55_RS20775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20775;old_locus_tag=LLC55_20795 NZ_CP086200.1 Protein Homology CDS 4420509 4421705 . - 0 ID=cds-WP_012445617.1;Parent=gene-LLC55_RS20775;Dbxref=Genbank:WP_012445617.1;Name=WP_012445617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155473.1;locus_tag=LLC55_RS20775;product=GAF domain-containing sensor histidine kinase;protein_id=WP_012445617.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4422028 4422465 . + . ID=gene-LLC55_RS20780;Name=LLC55_RS20780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20780;old_locus_tag=LLC55_20800 NZ_CP086200.1 Protein Homology CDS 4422028 4422465 . + 0 ID=cds-WP_012445616.1;Parent=gene-LLC55_RS20780;Dbxref=Genbank:WP_012445616.1;Name=WP_012445616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850457.1;locus_tag=LLC55_RS20780;product=DUF2946 family protein;protein_id=WP_012445616.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4422660 4424663 . + . ID=gene-LLC55_RS20785;Name=LLC55_RS20785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20785;old_locus_tag=LLC55_20805 NZ_CP086200.1 Protein Homology CDS 4422660 4424663 . + 0 ID=cds-WP_041182223.1;Parent=gene-LLC55_RS20785;Dbxref=Genbank:WP_041182223.1;Name=WP_041182223.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155471.1;locus_tag=LLC55_RS20785;product=TonB-dependent receptor;protein_id=WP_041182223.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4424663 4426264 . + . ID=gene-LLC55_RS20790;Name=LLC55_RS20790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20790;old_locus_tag=LLC55_20810 NZ_CP086200.1 Protein Homology CDS 4424663 4426264 . + 0 ID=cds-WP_069959950.1;Parent=gene-LLC55_RS20790;Dbxref=Genbank:WP_069959950.1;Name=WP_069959950.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114669.1;locus_tag=LLC55_RS20790;product=PepSY domain-containing protein;protein_id=WP_069959950.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4426400 4427125 . - . ID=gene-LLC55_RS20795;Name=LLC55_RS20795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20795;old_locus_tag=LLC55_20815 NZ_CP086200.1 Protein Homology CDS 4426400 4427125 . - 0 ID=cds-WP_011259873.1;Parent=gene-LLC55_RS20795;Dbxref=Genbank:WP_011259873.1;Name=WP_011259873.1;Ontology_term=GO:0019379,GO:0003824,GO:0004604;gbkey=CDS;go_function=catalytic activity|0003824||IEA,phosphoadenylyl-sulfate reductase (thioredoxin) activity|0004604||IEA;go_process=sulfate assimilation%2C phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)|0019379||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038282.1;locus_tag=LLC55_RS20795;product=phosphoadenylyl-sulfate reductase;protein_id=WP_011259873.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4427122 4428828 . - . ID=gene-LLC55_RS20800;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=LLC55_RS20800;old_locus_tag=LLC55_20820 NZ_CP086200.1 Protein Homology CDS 4427122 4428828 . - 0 ID=cds-WP_011259872.1;Parent=gene-LLC55_RS20800;Dbxref=Genbank:WP_011259872.1;Name=WP_011259872.1;Ontology_term=GO:0000103,GO:0004783;gbkey=CDS;gene=cysI;go_function=sulfite reductase (NADPH) activity|0004783||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802589.1;locus_tag=LLC55_RS20800;product=assimilatory sulfite reductase (NADPH) hemoprotein subunit;protein_id=WP_011259872.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4428952 4430799 . - . ID=gene-LLC55_RS20805;Name=LLC55_RS20805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20805;old_locus_tag=LLC55_20825 NZ_CP086200.1 Protein Homology CDS 4428952 4430799 . - 0 ID=cds-WP_011409142.1;Parent=gene-LLC55_RS20805;Dbxref=Genbank:WP_011409142.1;Name=WP_011409142.1;Ontology_term=GO:0006790,GO:0004783,GO:0009337;gbkey=CDS;go_component=sulfite reductase complex (NADPH)|0009337||IEA;go_function=sulfite reductase (NADPH) activity|0004783||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504375.1;locus_tag=LLC55_RS20805;product=assimilatory sulfite reductase (NADPH) flavoprotein subunit;protein_id=WP_011409142.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4430980 4431888 . + . ID=gene-LLC55_RS20810;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=LLC55_RS20810;old_locus_tag=LLC55_20830 NZ_CP086200.1 Protein Homology CDS 4430980 4431888 . + 0 ID=cds-WP_011259870.1;Parent=gene-LLC55_RS20810;Dbxref=Genbank:WP_011259870.1;Name=WP_011259870.1;Ontology_term=GO:0019419,GO:0004781;gbkey=CDS;gene=cysD;go_function=sulfate adenylyltransferase (ATP) activity|0004781||IEA;go_process=sulfate reduction|0019419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370926.1;locus_tag=LLC55_RS20810;product=sulfate adenylyltransferase subunit CysD;protein_id=WP_011259870.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4431951 4433864 . + . ID=gene-LLC55_RS20815;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=LLC55_RS20815;old_locus_tag=LLC55_20835 NZ_CP086200.1 Protein Homology CDS 4431951 4433864 . + 0 ID=cds-WP_027704223.1;Parent=gene-LLC55_RS20815;Dbxref=Genbank:WP_027704223.1;Name=WP_027704223.1;Ontology_term=GO:0006790,GO:0003924,GO:0005525;gbkey=CDS;gene=cysN;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167870.1;locus_tag=LLC55_RS20815;product=sulfate adenylyltransferase subunit CysN;protein_id=WP_027704223.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4434299 4435369 . + . ID=gene-LLC55_RS20820;Name=LLC55_RS20820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20820;old_locus_tag=LLC55_20840 NZ_CP086200.1 Protein Homology CDS 4434299 4435369 . + 0 ID=cds-WP_011409140.1;Parent=gene-LLC55_RS20820;Dbxref=Genbank:WP_011409140.1;Name=WP_011409140.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974022.1;locus_tag=LLC55_RS20820;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_011409140.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4435366 4438491 . + . ID=gene-LLC55_RS20825;Name=LLC55_RS20825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20825;old_locus_tag=LLC55_20845 NZ_CP086200.1 Protein Homology CDS 4435366 4438491 . + 0 ID=cds-WP_011259867.1;Parent=gene-LLC55_RS20825;Dbxref=Genbank:WP_011259867.1;Name=WP_011259867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370936.1;locus_tag=LLC55_RS20825;product=efflux RND transporter permease subunit;protein_id=WP_011259867.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4438843 4441512 . + . ID=gene-LLC55_RS20830;Name=LLC55_RS20830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20830;old_locus_tag=LLC55_20850 NZ_CP086200.1 Protein Homology CDS 4438843 4441512 . + 0 ID=cds-WP_042465131.1;Parent=gene-LLC55_RS20830;Dbxref=Genbank:WP_042465131.1;Name=WP_042465131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301826.1;locus_tag=LLC55_RS20830;product=M1 family metallopeptidase;protein_id=WP_042465131.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4441877 4442329 . - . ID=gene-LLC55_RS20835;Name=LLC55_RS20835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20835;old_locus_tag=LLC55_20855 NZ_CP086200.1 Protein Homology CDS 4441877 4442329 . - 0 ID=cds-WP_011259865.1;Parent=gene-LLC55_RS20835;Dbxref=Genbank:WP_011259865.1;Name=WP_011259865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409137.1;locus_tag=LLC55_RS20835;product=hypothetical protein;protein_id=WP_011259865.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4442392 4443357 . + . ID=gene-LLC55_RS20840;Name=LLC55_RS20840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20840;old_locus_tag=LLC55_20860 NZ_CP086200.1 Protein Homology CDS 4442392 4443357 . + 0 ID=cds-WP_109181988.1;Parent=gene-LLC55_RS20840;Dbxref=Genbank:WP_109181988.1;Name=WP_109181988.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS20840;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181988.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4444013 4444548 . + . ID=gene-LLC55_RS20845;Name=LLC55_RS20845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20845;old_locus_tag=LLC55_20865;pseudo=true NZ_CP086200.1 Protein Homology CDS 4444013 4444548 . + 0 ID=cds-LLC55_RS20845;Parent=gene-LLC55_RS20845;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477169.1;locus_tag=LLC55_RS20845;product=GNAT family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4444705 4445616 . + . ID=gene-LLC55_RS20850;Name=LLC55_RS20850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20850;old_locus_tag=LLC55_20870 NZ_CP086200.1 Protein Homology CDS 4444705 4445616 . + 0 ID=cds-WP_011409134.1;Parent=gene-LLC55_RS20850;Dbxref=Genbank:WP_011409134.1;Name=WP_011409134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301824.1;locus_tag=LLC55_RS20850;product=RNA methyltransferase;protein_id=WP_011409134.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4445911 4447134 . + . ID=gene-LLC55_RS20855;Name=LLC55_RS20855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20855;old_locus_tag=LLC55_20875 NZ_CP086200.1 Protein Homology CDS 4445911 4447134 . + 0 ID=cds-WP_230455206.1;Parent=gene-LLC55_RS20855;Dbxref=Genbank:WP_230455206.1;Name=WP_230455206.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012363.2;locus_tag=LLC55_RS20855;product=carboxylesterase family protein;protein_id=WP_230455206.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4447222 4448185 . - . ID=gene-LLC55_RS20860;Name=LLC55_RS20860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20860;old_locus_tag=LLC55_20880;pseudo=true NZ_CP086200.1 Protein Homology CDS 4447222 4448185 . - 0 ID=cds-LLC55_RS20860;Parent=gene-LLC55_RS20860;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182294.1;locus_tag=LLC55_RS20860;product=IS1595-like element ISXo2 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4448690 4449453 . + . ID=gene-LLC55_RS20865;Name=LLC55_RS20865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20865;old_locus_tag=LLC55_20885 NZ_CP086200.1 Protein Homology CDS 4448690 4449005 . + 0 ID=cds-WP_094187715.1-14;Parent=gene-LLC55_RS20865;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS20865;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4449005 4449453 . + 2 ID=cds-WP_094187715.1-14;Parent=gene-LLC55_RS20865;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS20865;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4449515 4449590 . + . ID=gene-LLC55_RS20870;Name=LLC55_RS20870;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS20870;old_locus_tag=LLC55_20890 NZ_CP086200.1 cmsearch ncRNA 4449515 4449590 . + . ID=rna-LLC55_RS20870;Parent=gene-LLC55_RS20870;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20870;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4449515 4449590 . + . ID=exon-LLC55_RS20870-1;Parent=rna-LLC55_RS20870;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS20870;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4449585 4450007 . - . ID=gene-LLC55_RS20875;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=LLC55_RS20875;old_locus_tag=LLC55_20895 NZ_CP086200.1 Protein Homology CDS 4449585 4450007 . - 0 ID=cds-WP_012445603.1;Parent=gene-LLC55_RS20875;Dbxref=Genbank:WP_012445603.1;Name=WP_012445603.1;Ontology_term=GO:0034220,GO:0008381;gbkey=CDS;gene=mscL;go_function=mechanosensitive ion channel activity|0008381||IEA;go_process=ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409130.1;locus_tag=LLC55_RS20875;product=large-conductance mechanosensitive channel protein MscL;protein_id=WP_012445603.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4450068 4450781 . - . ID=gene-LLC55_RS20880;Name=LLC55_RS20880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20880;old_locus_tag=LLC55_20900 NZ_CP086200.1 Protein Homology CDS 4450068 4450781 . - 0 ID=cds-WP_011409129.1;Parent=gene-LLC55_RS20880;Dbxref=Genbank:WP_011409129.1;Name=WP_011409129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052181.1;locus_tag=LLC55_RS20880;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_011409129.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4450950 4451966 . - . ID=gene-LLC55_RS20885;Name=LLC55_RS20885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20885;old_locus_tag=LLC55_20905;pseudo=true NZ_CP086200.1 Protein Homology CDS 4450950 4451966 . - 0 ID=cds-LLC55_RS20885;Parent=gene-LLC55_RS20885;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011229360.1;locus_tag=LLC55_RS20885;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4452314 4453689 . - . ID=gene-LLC55_RS20890;Name=LLC55_RS20890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20890;old_locus_tag=LLC55_20910;pseudo=true NZ_CP086200.1 Protein Homology CDS 4452314 4453689 . - 0 ID=cds-LLC55_RS20890;Parent=gene-LLC55_RS20890;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS20890;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4453828 4454103 . - . ID=gene-LLC55_RS20895;Name=LLC55_RS20895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20895;old_locus_tag=LLC55_20915 NZ_CP086200.1 Protein Homology CDS 4453828 4454103 . - 0 ID=cds-WP_011259856.1;Parent=gene-LLC55_RS20895;Dbxref=Genbank:WP_011259856.1;Name=WP_011259856.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259856.1;locus_tag=LLC55_RS20895;product=hypothetical protein;protein_id=WP_011259856.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4454363 4454704 . + . ID=gene-LLC55_RS20900;Name=LLC55_RS20900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20900;old_locus_tag=LLC55_20920 NZ_CP086200.1 Protein Homology CDS 4454363 4454704 . + 0 ID=cds-WP_011409127.1;Parent=gene-LLC55_RS20900;Dbxref=Genbank:WP_011409127.1;Name=WP_011409127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155445.1;locus_tag=LLC55_RS20900;product=Rieske (2Fe-2S) protein;protein_id=WP_011409127.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4454762 4456624 . - . ID=gene-LLC55_RS20905;Name=LLC55_RS20905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20905;old_locus_tag=LLC55_20925 NZ_CP086200.1 Protein Homology CDS 4454762 4456624 . - 0 ID=cds-WP_011259854.1;Parent=gene-LLC55_RS20905;Dbxref=Genbank:WP_011259854.1;Name=WP_011259854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237329.1;locus_tag=LLC55_RS20905;product=SLC13 family permease;protein_id=WP_011259854.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4456700 4457458 . - . ID=gene-LLC55_RS20910;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=LLC55_RS20910;old_locus_tag=LLC55_20930 NZ_CP086200.1 Protein Homology CDS 4456700 4457458 . - 0 ID=cds-WP_011259853.1;Parent=gene-LLC55_RS20910;Dbxref=Genbank:WP_011259853.1;Name=WP_011259853.1;Ontology_term=GO:0006400,GO:0008176;gbkey=CDS;gene=trmB;go_function=tRNA (guanine-N7-)-methyltransferase activity|0008176||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851486.1;locus_tag=LLC55_RS20910;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_011259853.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4457760 4458554 . - . ID=gene-LLC55_RS20915;Name=LLC55_RS20915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20915;old_locus_tag=LLC55_20935 NZ_CP086200.1 Protein Homology CDS 4457760 4458554 . - 0 ID=cds-WP_011409125.1;Parent=gene-LLC55_RS20915;Dbxref=Genbank:WP_011409125.1;Name=WP_011409125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487184.1;locus_tag=LLC55_RS20915;product=thiazole synthase;protein_id=WP_011409125.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4459090 4459290 . - . ID=gene-LLC55_RS20920;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=LLC55_RS20920;old_locus_tag=LLC55_20940 NZ_CP086200.1 Protein Homology CDS 4459090 4459290 . - 0 ID=cds-WP_011259851.1;Parent=gene-LLC55_RS20920;Dbxref=Genbank:WP_011259851.1;Name=WP_011259851.1;Ontology_term=GO:0009228,GO:0003824;gbkey=CDS;gene=thiS;go_function=catalytic activity|0003824||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903326.1;locus_tag=LLC55_RS20920;product=sulfur carrier protein ThiS;protein_id=WP_011259851.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4459481 4461265 . + . ID=gene-LLC55_RS20925;Name=LLC55_RS20925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20925;old_locus_tag=LLC55_20945 NZ_CP086200.1 Protein Homology CDS 4459481 4461265 . + 0 ID=cds-WP_012445601.1;Parent=gene-LLC55_RS20925;Dbxref=Genbank:WP_012445601.1;Name=WP_012445601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914545.1;locus_tag=LLC55_RS20925;product=autotransporter domain-containing esterase;protein_id=WP_012445601.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4461382 4461455 . + . ID=gene-LLC55_RS20930;Name=LLC55_RS20930;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS20930;old_locus_tag=LLC55_20950 NZ_CP086200.1 tRNAscan-SE tRNA 4461382 4461455 . + . ID=rna-LLC55_RS20930;Parent=gene-LLC55_RS20930;anticodon=(pos:4461414..4461416);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS20930;product=tRNA-Gly NZ_CP086200.1 tRNAscan-SE exon 4461382 4461455 . + . ID=exon-LLC55_RS20930-1;Parent=rna-LLC55_RS20930;anticodon=(pos:4461414..4461416);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS20930;product=tRNA-Gly NZ_CP086200.1 RefSeq pseudogene 4461847 4462807 . - . ID=gene-LLC55_RS20935;Name=LLC55_RS20935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20935;old_locus_tag=LLC55_20955;pseudo=true NZ_CP086200.1 Protein Homology CDS 4461847 4462807 . - 0 ID=cds-LLC55_RS20935;Parent=gene-LLC55_RS20935;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182294.1;locus_tag=LLC55_RS20935;product=IS1595-like element ISXo2 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4463057 4463452 . - . ID=gene-LLC55_RS20940;Name=LLC55_RS20940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20940;old_locus_tag=LLC55_20960 NZ_CP086200.1 GeneMarkS-2+ CDS 4463057 4463452 . - 0 ID=cds-WP_228329658.1;Parent=gene-LLC55_RS20940;Dbxref=Genbank:WP_228329658.1;Name=WP_228329658.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS20940;product=hypothetical protein;protein_id=WP_228329658.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4463522 4464623 . + . ID=gene-LLC55_RS20945;Name=LLC55_RS20945;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20945;old_locus_tag=LLC55_20965;pseudo=true NZ_CP086200.1 Protein Homology CDS 4463522 4464623 . + 0 ID=cds-LLC55_RS20945;Parent=gene-LLC55_RS20945;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558181.1;locus_tag=LLC55_RS20945;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4464658 4465176 . - . ID=gene-LLC55_RS20950;Name=LLC55_RS20950;end_range=4465176,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20950;old_locus_tag=LLC55_20970;partial=true;pseudo=true;start_range=.,4464658 NZ_CP086200.1 Protein Homology CDS 4464658 4465176 . - 0 ID=cds-LLC55_RS20950;Parent=gene-LLC55_RS20950;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=4465176,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257172.1;locus_tag=LLC55_RS20950;partial=true;product=transposase;pseudo=true;start_range=.,4464658;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4465394 4465504 . + . ID=gene-LLC55_RS20955;Name=LLC55_RS20955;end_range=4465504,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20955;old_locus_tag=LLC55_20975;partial=true;pseudo=true;start_range=.,4465394 NZ_CP086200.1 Protein Homology CDS 4465394 4465504 . + 0 ID=cds-LLC55_RS20955;Parent=gene-LLC55_RS20955;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=4465504,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS20955;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,4465394;transl_table=11 NZ_CP086200.1 RefSeq gene 4465731 4466123 . + . ID=gene-LLC55_RS20960;Name=LLC55_RS20960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20960;old_locus_tag=LLC55_20980 NZ_CP086200.1 Protein Homology CDS 4465731 4466123 . + 0 ID=cds-WP_027704094.1;Parent=gene-LLC55_RS20960;Dbxref=Genbank:WP_027704094.1;Name=WP_027704094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173974.1;locus_tag=LLC55_RS20960;product=hypothetical protein;protein_id=WP_027704094.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4466214 4466606 . + . ID=gene-LLC55_RS20965;Name=LLC55_RS20965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20965;old_locus_tag=LLC55_20985 NZ_CP086200.1 Protein Homology CDS 4466214 4466606 . + 0 ID=cds-WP_011409118.1;Parent=gene-LLC55_RS20965;Dbxref=Genbank:WP_011409118.1;Name=WP_011409118.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154750.1;locus_tag=LLC55_RS20965;product=H-NS family nucleoid-associated regulatory protein;protein_id=WP_011409118.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4466639 4467437 . - . ID=gene-LLC55_RS20970;Name=LLC55_RS20970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20970;old_locus_tag=LLC55_20990 NZ_CP086200.1 Protein Homology CDS 4467166 4467437 . - 0 ID=cds-WP_094187763.1-6;Parent=gene-LLC55_RS20970;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS20970;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4466639 4467167 . - 1 ID=cds-WP_094187763.1-6;Parent=gene-LLC55_RS20970;Dbxref=Genbank:WP_094187763.1;Name=WP_094187763.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS20970;product=IS5 family transposase;protein_id=WP_094187763.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4467611 4468261 . - . ID=gene-LLC55_RS20975;Name=LLC55_RS20975;end_range=4468261,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20975;old_locus_tag=LLC55_20995;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4467611 4468261 . - 0 ID=cds-LLC55_RS20975;Parent=gene-LLC55_RS20975;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=4468261,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503735.1;locus_tag=LLC55_RS20975;partial=true;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4468309 4469072 . + . ID=gene-LLC55_RS20980;Name=LLC55_RS20980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS20980;old_locus_tag=LLC55_21000 NZ_CP086200.1 Protein Homology CDS 4468309 4468624 . + 0 ID=cds-WP_094187804.1-2;Parent=gene-LLC55_RS20980;Dbxref=Genbank:WP_094187804.1;Name=WP_094187804.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS20980;product=IS5 family transposase;protein_id=WP_094187804.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4468624 4469072 . + 2 ID=cds-WP_094187804.1-2;Parent=gene-LLC55_RS20980;Dbxref=Genbank:WP_094187804.1;Name=WP_094187804.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS20980;product=IS5 family transposase;protein_id=WP_094187804.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4469069 4469326 . - . ID=gene-LLC55_RS23395;Name=LLC55_RS23395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23395 NZ_CP086200.1 GeneMarkS-2+ CDS 4469069 4469326 . - 0 ID=cds-WP_229001951.1;Parent=gene-LLC55_RS23395;Dbxref=Genbank:WP_229001951.1;Name=WP_229001951.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23395;product=hypothetical protein;protein_id=WP_229001951.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4469448 4470413 . - . ID=gene-LLC55_RS20990;Name=LLC55_RS20990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20990;old_locus_tag=LLC55_21010;pseudo=true NZ_CP086200.1 Protein Homology CDS 4469448 4470413 . - 0 ID=cds-LLC55_RS20990;Parent=gene-LLC55_RS20990;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS20990;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4470558 4471082 . + . ID=gene-LLC55_RS20995;Name=LLC55_RS20995;end_range=4471082,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS20995;old_locus_tag=LLC55_21015;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4470558 4471082 . + 0 ID=cds-LLC55_RS20995;Parent=gene-LLC55_RS20995;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=4471082,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS20995;partial=true;product=IS5-like element ISXo1 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4471049 4471797 . - . ID=gene-LLC55_RS21000;Name=LLC55_RS21000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21000;old_locus_tag=LLC55_21020 NZ_CP086200.1 Protein Homology CDS 4471482 4471797 . - 0 ID=cds-WP_228329659.1;Parent=gene-LLC55_RS21000;Dbxref=Genbank:WP_228329659.1;Name=WP_228329659.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS21000;product=IS5 family transposase;protein_id=WP_228329659.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4471049 4471482 . - 2 ID=cds-WP_228329659.1;Parent=gene-LLC55_RS21000;Dbxref=Genbank:WP_228329659.1;Name=WP_228329659.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS21000;product=IS5 family transposase;protein_id=WP_228329659.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4472038 4473003 . + . ID=gene-LLC55_RS21005;Name=LLC55_RS21005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21005;old_locus_tag=LLC55_21025 NZ_CP086200.1 Protein Homology CDS 4472038 4473003 . + 0 ID=cds-WP_041182722.1;Parent=gene-LLC55_RS21005;Dbxref=Genbank:WP_041182722.1;Name=WP_041182722.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS21005;product=IS1595-like element ISXo5 family transposase;protein_id=WP_041182722.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4473000 4473527 . - . ID=gene-LLC55_RS21010;Name=LLC55_RS21010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21010;old_locus_tag=LLC55_21030 NZ_CP086200.1 Protein Homology CDS 4473000 4473527 . - 0 ID=cds-WP_011259834.1;Parent=gene-LLC55_RS21010;Dbxref=Genbank:WP_011259834.1;Name=WP_011259834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259834.1;locus_tag=LLC55_RS21010;product=hypothetical protein;protein_id=WP_011259834.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4473822 4474778 . + . ID=gene-LLC55_RS21015;Name=LLC55_RS21015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21015;old_locus_tag=LLC55_21035 NZ_CP086200.1 Protein Homology CDS 4473822 4474778 . + 0 ID=cds-WP_228329660.1;Parent=gene-LLC55_RS21015;Dbxref=Genbank:WP_228329660.1;Name=WP_228329660.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182719.1;locus_tag=LLC55_RS21015;product=IS30-like element IS1112b family transposase;protein_id=WP_228329660.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4474779 4475945 . + . ID=gene-LLC55_RS21020;Name=LLC55_RS21020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21020;old_locus_tag=LLC55_21040 NZ_CP086200.1 Protein Homology CDS 4474779 4475945 . + 0 ID=cds-WP_228329764.1;Parent=gene-LLC55_RS21020;Dbxref=Genbank:WP_228329764.1;Name=WP_228329764.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050083.1;locus_tag=LLC55_RS21020;product=IS4 family transposase;protein_id=WP_228329764.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4476033 4477352 . + . ID=gene-LLC55_RS21025;Name=LLC55_RS21025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21025;old_locus_tag=LLC55_21045 NZ_CP086200.1 Protein Homology CDS 4476033 4477352 . + 0 ID=cds-WP_228329661.1;Parent=gene-LLC55_RS21025;Dbxref=Genbank:WP_228329661.1;Name=WP_228329661.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS21025;product=IS701 family transposase;protein_id=WP_228329661.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4477443 4477634 . + . ID=gene-LLC55_RS21030;Name=LLC55_RS21030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21030;old_locus_tag=LLC55_21050 NZ_CP086200.1 GeneMarkS-2+ CDS 4477443 4477634 . + 0 ID=cds-WP_011259831.1;Parent=gene-LLC55_RS21030;Dbxref=Genbank:WP_011259831.1;Name=WP_011259831.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS21030;product=hypothetical protein;protein_id=WP_011259831.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4477602 4478615 . - . ID=gene-LLC55_RS21035;Name=LLC55_RS21035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21035;old_locus_tag=LLC55_21055 NZ_CP086200.1 Protein Homology CDS 4477602 4478615 . - 0 ID=cds-WP_011409111.1;Parent=gene-LLC55_RS21035;Dbxref=Genbank:WP_011409111.1;Name=WP_011409111.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502684.1;locus_tag=LLC55_RS21035;product=peptidylprolyl isomerase;protein_id=WP_011409111.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4478649 4478882 . - . ID=gene-LLC55_RS21040;Name=LLC55_RS21040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21040;old_locus_tag=LLC55_21060 NZ_CP086200.1 Protein Homology CDS 4478649 4478882 . - 0 ID=cds-WP_011259829.1;Parent=gene-LLC55_RS21040;Dbxref=Genbank:WP_011259829.1;Name=WP_011259829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051827.1;locus_tag=LLC55_RS21040;product=DUF378 domain-containing protein;protein_id=WP_011259829.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4480259 4481022 . - . ID=gene-LLC55_RS21045;Name=LLC55_RS21045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21045;old_locus_tag=LLC55_21065 NZ_CP086200.1 Protein Homology CDS 4480707 4481022 . - 0 ID=cds-WP_094187804.1-3;Parent=gene-LLC55_RS21045;Dbxref=Genbank:WP_094187804.1;Name=WP_094187804.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS21045;product=IS5 family transposase;protein_id=WP_094187804.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4480259 4480707 . - 2 ID=cds-WP_094187804.1-3;Parent=gene-LLC55_RS21045;Dbxref=Genbank:WP_094187804.1;Name=WP_094187804.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS21045;product=IS5 family transposase;protein_id=WP_094187804.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4481147 4482112 . + . ID=gene-LLC55_RS21050;Name=LLC55_RS21050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21050;old_locus_tag=LLC55_21070 NZ_CP086200.1 Protein Homology CDS 4481147 4482112 . + 0 ID=cds-WP_109181928.1-5;Parent=gene-LLC55_RS21050;Dbxref=Genbank:WP_109181928.1;Name=WP_109181928.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS21050;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109181928.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4482412 4482861 . - . ID=gene-LLC55_RS21055;Name=LLC55_RS21055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21055;old_locus_tag=LLC55_21075 NZ_CP086200.1 Protein Homology CDS 4482412 4482861 . - 0 ID=cds-WP_011409108.1;Parent=gene-LLC55_RS21055;Dbxref=Genbank:WP_011409108.1;Name=WP_011409108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304338.1;locus_tag=LLC55_RS21055;product=DUF4442 domain-containing protein;protein_id=WP_011409108.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4483117 4483974 . - . ID=gene-LLC55_RS21060;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=LLC55_RS21060;old_locus_tag=LLC55_21080 NZ_CP086200.1 Protein Homology CDS 4483117 4483974 . - 0 ID=cds-WP_011409107.1;Parent=gene-LLC55_RS21060;Dbxref=Genbank:WP_011409107.1;Name=WP_011409107.1;Ontology_term=GO:0015036,GO:0005737;gbkey=CDS;gene=trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919399.1;locus_tag=LLC55_RS21060;product=thioredoxin;protein_id=WP_011409107.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4484179 4484790 . + . ID=gene-LLC55_RS21065;Name=LLC55_RS21065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21065;old_locus_tag=LLC55_21085 NZ_CP086200.1 Protein Homology CDS 4484179 4484790 . + 0 ID=cds-WP_011259826.1;Parent=gene-LLC55_RS21065;Dbxref=Genbank:WP_011259826.1;Name=WP_011259826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502688.1;locus_tag=LLC55_RS21065;product=DUF998 domain-containing protein;protein_id=WP_011259826.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4484863 4487505 . + . ID=gene-LLC55_RS21070;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=LLC55_RS21070;old_locus_tag=LLC55_21090 NZ_CP086200.1 Protein Homology CDS 4484863 4487505 . + 0 ID=cds-WP_011259825.1;Parent=gene-LLC55_RS21070;Dbxref=Genbank:WP_011259825.1;Name=WP_011259825.1;Ontology_term=GO:0006429,GO:0004823,GO:0005737;gbkey=CDS;gene=leuS;go_component=cytoplasm|0005737||IEA;go_function=leucine-tRNA ligase activity|0004823||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972619.1;locus_tag=LLC55_RS21070;product=leucine--tRNA ligase;protein_id=WP_011259825.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4488019 4488654 . + . ID=gene-LLC55_RS21075;Name=lptE;gbkey=Gene;gene=lptE;gene_biotype=protein_coding;locus_tag=LLC55_RS21075;old_locus_tag=LLC55_21095 NZ_CP086200.1 Protein Homology CDS 4488019 4488654 . + 0 ID=cds-WP_011409105.1;Parent=gene-LLC55_RS21075;Dbxref=Genbank:WP_011409105.1;Name=WP_011409105.1;Ontology_term=GO:0043165,GO:0019867;gbkey=CDS;gene=lptE;go_component=outer membrane|0019867||IEA;go_process=Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162628.1;locus_tag=LLC55_RS21075;product=LPS assembly lipoprotein LptE;protein_id=WP_011409105.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4488677 4489705 . + . ID=gene-LLC55_RS21080;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=LLC55_RS21080;old_locus_tag=LLC55_21100 NZ_CP086200.1 Protein Homology CDS 4488677 4489705 . + 0 ID=cds-WP_011259823.1;Parent=gene-LLC55_RS21080;Dbxref=Genbank:WP_011259823.1;Name=WP_011259823.1;Ontology_term=GO:0006260,GO:0003887,GO:0009360;gbkey=CDS;gene=holA;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116404.1;locus_tag=LLC55_RS21080;product=DNA polymerase III subunit delta;protein_id=WP_011259823.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4489702 4490601 . + . ID=gene-LLC55_RS21085;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=LLC55_RS21085;old_locus_tag=LLC55_21105 NZ_CP086200.1 Protein Homology CDS 4489702 4490601 . + 0 ID=cds-WP_011409104.1;Parent=gene-LLC55_RS21085;Dbxref=Genbank:WP_011409104.1;Name=WP_011409104.1;Ontology_term=GO:0009435,GO:0016779;gbkey=CDS;gene=nadD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157150.1;locus_tag=LLC55_RS21085;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_011409104.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4490658 4491074 . + . ID=gene-LLC55_RS21090;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=LLC55_RS21090;old_locus_tag=LLC55_21110 NZ_CP086200.1 Protein Homology CDS 4490658 4491074 . + 0 ID=cds-WP_011259822.1;Parent=gene-LLC55_RS21090;Dbxref=Genbank:WP_011259822.1;Name=WP_011259822.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259822.1;locus_tag=LLC55_RS21090;product=ribosome silencing factor;protein_id=WP_011259822.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4491086 4492201 . + . ID=gene-LLC55_RS21095;Name=LLC55_RS21095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21095;old_locus_tag=LLC55_21115 NZ_CP086200.1 Protein Homology CDS 4491086 4492201 . + 0 ID=cds-WP_011259821.1;Parent=gene-LLC55_RS21095;Dbxref=Genbank:WP_011259821.1;Name=WP_011259821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445581.1;locus_tag=LLC55_RS21095;product=J domain-containing protein;protein_id=WP_011259821.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4492527 4492706 . - . ID=gene-LLC55_RS21100;Name=LLC55_RS21100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21100;old_locus_tag=LLC55_21120 NZ_CP086200.1 Protein Homology CDS 4492527 4492706 . - 0 ID=cds-WP_012445580.1;Parent=gene-LLC55_RS21100;Dbxref=Genbank:WP_012445580.1;Name=WP_012445580.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017591.2;locus_tag=LLC55_RS21100;product=DUF839 domain-containing protein;protein_id=WP_012445580.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4492714 4493169 . - . ID=gene-LLC55_RS21105;Name=LLC55_RS21105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21105;old_locus_tag=LLC55_21125;partial=true;pseudo=true;start_range=.,4492714 NZ_CP086200.1 Protein Homology CDS 4492714 4493169 . - 0 ID=cds-LLC55_RS21105;Parent=gene-LLC55_RS21105;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005933077.1;locus_tag=LLC55_RS21105;partial=true;product=DUF839 domain-containing protein;pseudo=true;start_range=.,4492714;transl_table=11 NZ_CP086200.1 RefSeq gene 4493291 4493761 . + . ID=gene-LLC55_RS21110;Name=rlmH;gbkey=Gene;gene=rlmH;gene_biotype=protein_coding;locus_tag=LLC55_RS21110;old_locus_tag=LLC55_21130 NZ_CP086200.1 Protein Homology CDS 4493291 4493761 . + 0 ID=cds-WP_011409102.1;Parent=gene-LLC55_RS21110;Dbxref=Genbank:WP_011409102.1;Name=WP_011409102.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rlmH;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301047.1;locus_tag=LLC55_RS21110;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=WP_011409102.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4493835 4493910 . - . ID=gene-LLC55_RS21115;Name=LLC55_RS21115;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS21115;old_locus_tag=LLC55_21135 NZ_CP086200.1 cmsearch ncRNA 4493835 4493910 . - . ID=rna-LLC55_RS21115;Parent=gene-LLC55_RS21115;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21115;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4493835 4493910 . - . ID=exon-LLC55_RS21115-1;Parent=rna-LLC55_RS21115;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21115;product=sX9 sRNA NZ_CP086200.1 RefSeq pseudogene 4494197 4494800 . - . ID=gene-LLC55_RS21120;Name=LLC55_RS21120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21120;old_locus_tag=LLC55_21140;pseudo=true NZ_CP086200.1 Protein Homology CDS 4494197 4494800 . - 0 ID=cds-LLC55_RS21120;Parent=gene-LLC55_RS21120;Note=frameshifted;Ontology_term=GO:0006810,GO:0015291;gbkey=CDS;go_function=secondary active transmembrane transporter activity|0015291||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163037.1;locus_tag=LLC55_RS21120;product=TonB family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4495180 4498293 . - . ID=gene-LLC55_RS21125;Name=LLC55_RS21125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21125;old_locus_tag=LLC55_21145 NZ_CP086200.1 Protein Homology CDS 4495180 4498293 . - 0 ID=cds-WP_011409100.1;Parent=gene-LLC55_RS21125;Dbxref=Genbank:WP_011409100.1;Name=WP_011409100.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377546.1;locus_tag=LLC55_RS21125;product=TonB-dependent receptor;protein_id=WP_011409100.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4498441 4498518 . - . ID=gene-LLC55_RS21130;Name=LLC55_RS21130;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS21130;old_locus_tag=LLC55_21150 NZ_CP086200.1 cmsearch ncRNA 4498441 4498518 . - . ID=rna-LLC55_RS21130;Parent=gene-LLC55_RS21130;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21130;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4498441 4498518 . - . ID=exon-LLC55_RS21130-1;Parent=rna-LLC55_RS21130;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21130;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4498765 4499499 . - . ID=gene-LLC55_RS21135;Name=LLC55_RS21135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21135;old_locus_tag=LLC55_21155 NZ_CP086200.1 Protein Homology CDS 4498765 4499499 . - 0 ID=cds-WP_011409099.1;Parent=gene-LLC55_RS21135;Dbxref=Genbank:WP_011409099.1;Name=WP_011409099.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302808.1;locus_tag=LLC55_RS21135;product=SIMPL domain-containing protein;protein_id=WP_011409099.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4499638 4500210 . + . ID=gene-LLC55_RS21140;Name=LLC55_RS21140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21140;old_locus_tag=LLC55_21160 NZ_CP086200.1 Protein Homology CDS 4499638 4500210 . + 0 ID=cds-WP_011409098.1;Parent=gene-LLC55_RS21140;Dbxref=Genbank:WP_011409098.1;Name=WP_011409098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117854.1;locus_tag=LLC55_RS21140;product=Maf-like protein;protein_id=WP_011409098.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4500210 4501715 . + . ID=gene-LLC55_RS21145;Name=rng;gbkey=Gene;gene=rng;gene_biotype=protein_coding;locus_tag=LLC55_RS21145;old_locus_tag=LLC55_21165 NZ_CP086200.1 Protein Homology CDS 4500210 4501715 . + 0 ID=cds-WP_075242241.1;Parent=gene-LLC55_RS21145;Dbxref=Genbank:WP_075242241.1;Name=WP_075242241.1;Ontology_term=GO:0006396,GO:0003723,GO:0004540;gbkey=CDS;gene=rng;go_function=RNA binding|0003723||IEA,ribonuclease activity|0004540||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802933.1;locus_tag=LLC55_RS21145;product=ribonuclease G;protein_id=WP_075242241.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4501849 4505769 . + . ID=gene-LLC55_RS21150;Name=LLC55_RS21150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21150;old_locus_tag=LLC55_21170 NZ_CP086200.1 Protein Homology CDS 4501849 4505769 . + 0 ID=cds-WP_075242240.1;Parent=gene-LLC55_RS21150;Dbxref=Genbank:WP_075242240.1;Name=WP_075242240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051814.1;locus_tag=LLC55_RS21150;product=YhdP family protein;protein_id=WP_075242240.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4505775 4506527 . - . ID=gene-LLC55_RS21155;Name=LLC55_RS21155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21155;old_locus_tag=LLC55_21175 NZ_CP086200.1 Protein Homology CDS 4505775 4506527 . - 0 ID=cds-WP_075242242.1;Parent=gene-LLC55_RS21155;Dbxref=Genbank:WP_075242242.1;Name=WP_075242242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919426.1;locus_tag=LLC55_RS21155;product=DUF6065 family protein;protein_id=WP_075242242.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4506626 4508071 . + . ID=gene-LLC55_RS21160;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=LLC55_RS21160;old_locus_tag=LLC55_21180 NZ_CP086200.1 Protein Homology CDS 4506626 4508071 . + 0 ID=cds-WP_011259808.1;Parent=gene-LLC55_RS21160;Dbxref=Genbank:WP_011259808.1;Name=WP_011259808.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=tldD;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972594.1;locus_tag=LLC55_RS21160;product=metalloprotease TldD;protein_id=WP_011259808.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4508328 4508909 . - . ID=gene-LLC55_RS21165;Name=LLC55_RS21165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21165;old_locus_tag=LLC55_21185 NZ_CP086200.1 Protein Homology CDS 4508328 4508909 . - 0 ID=cds-WP_011409095.1;Parent=gene-LLC55_RS21165;Dbxref=Genbank:WP_011409095.1;Name=WP_011409095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156395.1;locus_tag=LLC55_RS21165;product=ribosome-associated protein;protein_id=WP_011409095.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4509055 4510422 . + . ID=gene-LLC55_RS21170;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=LLC55_RS21170;old_locus_tag=LLC55_21190 NZ_CP086200.1 Protein Homology CDS 4509055 4510422 . + 0 ID=cds-WP_014502704.1;Parent=gene-LLC55_RS21170;Dbxref=Genbank:WP_014502704.1;Name=WP_014502704.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=pmbA;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019662101.1;locus_tag=LLC55_RS21170;product=metalloprotease PmbA;protein_id=WP_014502704.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4510419 4510739 . + . ID=gene-LLC55_RS21175;Name=LLC55_RS21175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21175;old_locus_tag=LLC55_21195 NZ_CP086200.1 GeneMarkS-2+ CDS 4510419 4510739 . + 0 ID=cds-WP_069963878.1;Parent=gene-LLC55_RS21175;Dbxref=Genbank:WP_069963878.1;Name=WP_069963878.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS21175;product=hypothetical protein;protein_id=WP_069963878.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4510736 4510900 . + . ID=gene-LLC55_RS21180;Name=LLC55_RS21180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21180;old_locus_tag=LLC55_21200 NZ_CP086200.1 Protein Homology CDS 4510736 4510900 . + 0 ID=cds-WP_228329765.1;Parent=gene-LLC55_RS21180;Dbxref=Genbank:WP_228329765.1;Name=WP_228329765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502706.1;locus_tag=LLC55_RS21180;product=DUF4870 domain-containing protein;protein_id=WP_228329765.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4510952 4511416 . + . ID=gene-LLC55_RS21185;Name=LLC55_RS21185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21185;old_locus_tag=LLC55_21205 NZ_CP086200.1 Protein Homology CDS 4510952 4511416 . + 0 ID=cds-WP_027704198.1;Parent=gene-LLC55_RS21185;Dbxref=Genbank:WP_027704198.1;Name=WP_027704198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112466.1;locus_tag=LLC55_RS21185;product=DUF4870 domain-containing protein;protein_id=WP_027704198.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4511486 4512579 . - . ID=gene-LLC55_RS21190;Name=LLC55_RS21190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21190;old_locus_tag=LLC55_21210;pseudo=true NZ_CP086200.1 Protein Homology CDS 4511486 4512579 . - 0 ID=cds-LLC55_RS21190;Parent=gene-LLC55_RS21190;Note=frameshifted;Ontology_term=GO:0004222;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508287.1;locus_tag=LLC55_RS21190;product=M35 family metallo-endopeptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4513263 4514138 . - . ID=gene-LLC55_RS21195;Name=LLC55_RS21195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21195;old_locus_tag=LLC55_21215 NZ_CP086200.1 Protein Homology CDS 4513263 4514138 . - 0 ID=cds-WP_075242285.1;Parent=gene-LLC55_RS21195;Dbxref=Genbank:WP_075242285.1;Name=WP_075242285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174296.1;locus_tag=LLC55_RS21195;product=polyprenyl synthetase family protein;protein_id=WP_075242285.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4514140 4514400 . - . ID=gene-LLC55_RS21200;Name=LLC55_RS21200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21200;old_locus_tag=LLC55_21220 NZ_CP086200.1 Protein Homology CDS 4514140 4514400 . - 0 ID=cds-WP_011259802.1;Parent=gene-LLC55_RS21200;Dbxref=Genbank:WP_011259802.1;Name=WP_011259802.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159976.1;locus_tag=LLC55_RS21200;product=exodeoxyribonuclease VII small subunit;protein_id=WP_011259802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4514432 4515736 . - . ID=gene-LLC55_RS21205;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=LLC55_RS21205;old_locus_tag=LLC55_21225 NZ_CP086200.1 Protein Homology CDS 4514432 4515736 . - 0 ID=cds-WP_044756614.1;Parent=gene-LLC55_RS21205;Dbxref=Genbank:WP_044756614.1;Name=WP_044756614.1;Ontology_term=GO:0006400,GO:0016879;gbkey=CDS;gene=tilS;go_function=ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090562.1;locus_tag=LLC55_RS21205;product=tRNA lysidine(34) synthetase TilS;protein_id=WP_044756614.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4515770 4517476 . - . ID=gene-LLC55_RS21210;Name=LLC55_RS21210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21210;old_locus_tag=LLC55_21230 NZ_CP086200.1 Protein Homology CDS 4515770 4517476 . - 0 ID=cds-WP_011259800.1;Parent=gene-LLC55_RS21210;Dbxref=Genbank:WP_011259800.1;Name=WP_011259800.1;Ontology_term=GO:0016791;gbkey=CDS;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502713.1;locus_tag=LLC55_RS21210;product=alkaline phosphatase;protein_id=WP_011259800.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4517620 4518961 . + . ID=gene-LLC55_RS21215;Name=LLC55_RS21215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21215;old_locus_tag=LLC55_21235;pseudo=true NZ_CP086200.1 Protein Homology CDS 4517620 4518961 . + 0 ID=cds-LLC55_RS21215;Parent=gene-LLC55_RS21215;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300949.1;locus_tag=LLC55_RS21215;product=dicarboxylate/amino acid:cation symporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4518971 4519806 . + . ID=gene-LLC55_RS21220;Name=LLC55_RS21220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21220;old_locus_tag=LLC55_21240;pseudo=true NZ_CP086200.1 Protein Homology CDS 4518971 4519806 . + 0 ID=cds-LLC55_RS21220;Parent=gene-LLC55_RS21220;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112463.1;locus_tag=LLC55_RS21220;product=class I SAM-dependent methyltransferase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4520053 4520544 . + . ID=gene-LLC55_RS21225;Name=LLC55_RS21225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21225;old_locus_tag=LLC55_21245 NZ_CP086200.1 Protein Homology CDS 4520053 4520544 . + 0 ID=cds-WP_011259797.1;Parent=gene-LLC55_RS21225;Dbxref=Genbank:WP_011259797.1;Name=WP_011259797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259797.1;locus_tag=LLC55_RS21225;product=acyl-CoA thioesterase;protein_id=WP_011259797.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4520752 4521501 . - . ID=gene-LLC55_RS21230;Name=LLC55_RS21230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21230;old_locus_tag=LLC55_21250 NZ_CP086200.1 Protein Homology CDS 4520752 4521501 . - 0 ID=cds-WP_011259796.1;Parent=gene-LLC55_RS21230;Dbxref=Genbank:WP_011259796.1;Name=WP_011259796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437923.1;locus_tag=LLC55_RS21230;product=C40 family peptidase;protein_id=WP_011259796.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4521611 4522147 . - . ID=gene-LLC55_RS21235;Name=LLC55_RS21235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21235;old_locus_tag=LLC55_21255 NZ_CP086200.1 Protein Homology CDS 4521611 4522147 . - 0 ID=cds-WP_027704197.1;Parent=gene-LLC55_RS21235;Dbxref=Genbank:WP_027704197.1;Name=WP_027704197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156384.1;locus_tag=LLC55_RS21235;product=C40 family peptidase;protein_id=WP_027704197.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4522258 4522737 . + . ID=gene-LLC55_RS21240;Name=LLC55_RS21240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21240;old_locus_tag=LLC55_21260 NZ_CP086200.1 Protein Homology CDS 4522258 4522737 . + 0 ID=cds-WP_011259794.1;Parent=gene-LLC55_RS21240;Dbxref=Genbank:WP_011259794.1;Name=WP_011259794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903985.1;locus_tag=LLC55_RS21240;product=peptidylprolyl isomerase;protein_id=WP_011259794.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4522965 4524209 . + . ID=gene-LLC55_RS21245;Name=LLC55_RS21245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21245;old_locus_tag=LLC55_21265 NZ_CP086200.1 Protein Homology CDS 4522965 4524209 . + 0 ID=cds-WP_011409085.1;Parent=gene-LLC55_RS21245;Dbxref=Genbank:WP_011409085.1;Name=WP_011409085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486872.1;locus_tag=LLC55_RS21245;product=DUF418 domain-containing protein;protein_id=WP_011409085.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4524217 4525467 . + . ID=gene-LLC55_RS21250;Name=LLC55_RS21250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21250;old_locus_tag=LLC55_21270 NZ_CP086200.1 Protein Homology CDS 4524217 4525467 . + 0 ID=cds-WP_011409084.1;Parent=gene-LLC55_RS21250;Dbxref=Genbank:WP_011409084.1;Name=WP_011409084.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377592.1;locus_tag=LLC55_RS21250;product=FAD-dependent oxidoreductase;protein_id=WP_011409084.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4525464 4526659 . + . ID=gene-LLC55_RS21255;Name=LLC55_RS21255;end_range=4526659,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21255;old_locus_tag=LLC55_21275;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4525464 4526659 . + 0 ID=cds-LLC55_RS21255;Parent=gene-LLC55_RS21255;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0016491;end_range=4526659,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486876.1;locus_tag=LLC55_RS21255;partial=true;product=FAD-dependent oxidoreductase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4526751 4527713 . + . ID=gene-LLC55_RS21260;Name=LLC55_RS21260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21260;old_locus_tag=LLC55_21280 NZ_CP086200.1 Protein Homology CDS 4526751 4527713 . + 0 ID=cds-WP_011409082.1;Parent=gene-LLC55_RS21260;Dbxref=Genbank:WP_011409082.1;Name=WP_011409082.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259790.1;locus_tag=LLC55_RS21260;product=IS1595 family transposase;protein_id=WP_011409082.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4527731 4527910 . + . ID=gene-LLC55_RS21265;Name=LLC55_RS21265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21265;old_locus_tag=LLC55_21285;partial=true;pseudo=true;start_range=.,4527731 NZ_CP086200.1 Protein Homology CDS 4527731 4527910 . + 0 ID=cds-LLC55_RS21265;Parent=gene-LLC55_RS21265;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486876.1;locus_tag=LLC55_RS21265;partial=true;product=glutathione-disulfide reductase;pseudo=true;start_range=.,4527731;transl_table=11 NZ_CP086200.1 RefSeq gene 4528151 4528558 . + . ID=gene-LLC55_RS21270;Name=LLC55_RS21270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21270;old_locus_tag=LLC55_21290 NZ_CP086200.1 Protein Homology CDS 4528151 4528558 . + 0 ID=cds-WP_011409081.1;Parent=gene-LLC55_RS21270;Dbxref=Genbank:WP_011409081.1;Name=WP_011409081.1;Ontology_term=GO:0006281,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051802.1;locus_tag=LLC55_RS21270;product=MGMT family protein;protein_id=WP_011409081.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4528599 4529297 . + . ID=gene-LLC55_RS21275;Name=LLC55_RS21275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21275;old_locus_tag=LLC55_21295 NZ_CP086200.1 Protein Homology CDS 4528599 4529297 . + 0 ID=cds-WP_012445555.1;Parent=gene-LLC55_RS21275;Dbxref=Genbank:WP_012445555.1;Name=WP_012445555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169516.1;locus_tag=LLC55_RS21275;product=rhomboid family intramembrane serine protease;protein_id=WP_012445555.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4529568 4531583 . - . ID=gene-LLC55_RS21280;Name=LLC55_RS21280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21280;old_locus_tag=LLC55_21300 NZ_CP086200.1 Protein Homology CDS 4529568 4531583 . - 0 ID=cds-WP_011259787.1;Parent=gene-LLC55_RS21280;Dbxref=Genbank:WP_011259787.1;Name=WP_011259787.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969573.1;locus_tag=LLC55_RS21280;product=M13 family metallopeptidase;protein_id=WP_011259787.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4531808 4532503 . + . ID=gene-LLC55_RS21285;Name=LLC55_RS21285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21285;old_locus_tag=LLC55_21305;partial=true;pseudo=true;start_range=.,4531808 NZ_CP086200.1 Protein Homology CDS 4531808 4532503 . + 0 ID=cds-LLC55_RS21285;Parent=gene-LLC55_RS21285;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_082322974.1;locus_tag=LLC55_RS21285;partial=true;product=IS30 family transposase;pseudo=true;start_range=.,4531808;transl_table=11 NZ_CP086200.1 RefSeq gene 4532971 4533822 . + . ID=gene-LLC55_RS21290;Name=apbC;gbkey=Gene;gene=apbC;gene_biotype=protein_coding;locus_tag=LLC55_RS21290;old_locus_tag=LLC55_21310 NZ_CP086200.1 Protein Homology CDS 4532971 4533822 . + 0 ID=cds-WP_011259785.1;Parent=gene-LLC55_RS21290;Dbxref=Genbank:WP_011259785.1;Name=WP_011259785.1;Ontology_term=GO:0016226,GO:0005524,GO:0016887,GO:0051536;gbkey=CDS;gene=apbC;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156372.1;locus_tag=LLC55_RS21290;product=iron-sulfur cluster carrier protein ApbC;protein_id=WP_011259785.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4533915 4534484 . + . ID=gene-LLC55_RS21295;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=LLC55_RS21295;old_locus_tag=LLC55_21315 NZ_CP086200.1 Protein Homology CDS 4533915 4534484 . + 0 ID=cds-WP_011259784.1;Parent=gene-LLC55_RS21295;Dbxref=Genbank:WP_011259784.1;Name=WP_011259784.1;Ontology_term=GO:0009394,GO:0008829;gbkey=CDS;gene=dcd;go_function=dCTP deaminase activity|0008829||IEA;go_process=2'-deoxyribonucleotide metabolic process|0009394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912996.1;locus_tag=LLC55_RS21295;product=dCTP deaminase;protein_id=WP_011259784.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4534519 4534704 . - . ID=gene-LLC55_RS21300;Name=LLC55_RS21300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21300;old_locus_tag=LLC55_21320 NZ_CP086200.1 Protein Homology CDS 4534519 4534704 . - 0 ID=cds-WP_011259783.1;Parent=gene-LLC55_RS21300;Dbxref=Genbank:WP_011259783.1;Name=WP_011259783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486896.1;locus_tag=LLC55_RS21300;product=DUF5668 domain-containing protein;protein_id=WP_011259783.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4535362 4535529 . - . ID=gene-LLC55_RS21305;Name=LLC55_RS21305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21305;old_locus_tag=LLC55_21325 NZ_CP086200.1 Protein Homology CDS 4535362 4535529 . - 0 ID=cds-WP_011259782.1;Parent=gene-LLC55_RS21305;Dbxref=Genbank:WP_011259782.1;Name=WP_011259782.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259782.1;locus_tag=LLC55_RS21305;product=DUF5668 domain-containing protein;protein_id=WP_011259782.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4535557 4535991 . - . ID=gene-LLC55_RS21310;Name=LLC55_RS21310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21310;old_locus_tag=LLC55_21330 NZ_CP086200.1 Protein Homology CDS 4535557 4535991 . - 0 ID=cds-WP_011409078.1;Parent=gene-LLC55_RS21310;Dbxref=Genbank:WP_011409078.1;Name=WP_011409078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503835.1;locus_tag=LLC55_RS21310;product=HIT family protein;protein_id=WP_011409078.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4535988 4536649 . - . ID=gene-LLC55_RS21315;Name=LLC55_RS21315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21315;old_locus_tag=LLC55_21335;pseudo=true NZ_CP086200.1 Protein Homology CDS 4535988 4536649 . - 0 ID=cds-LLC55_RS21315;Parent=gene-LLC55_RS21315;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302061.1;locus_tag=LLC55_RS21315;product=dienelactone hydrolase family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4536826 4538226 . + . ID=gene-LLC55_RS21320;Name=rimO;gbkey=Gene;gene=rimO;gene_biotype=protein_coding;locus_tag=LLC55_RS21320;old_locus_tag=LLC55_21340 NZ_CP086200.1 Protein Homology CDS 4536826 4538226 . + 0 ID=cds-WP_044756621.1;Parent=gene-LLC55_RS21320;Dbxref=Genbank:WP_044756621.1;Name=WP_044756621.1;Ontology_term=GO:0018339,GO:0008172,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=rimO;go_function=S-methyltransferase activity|0008172||IEA,transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid|0018339||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259780.1;locus_tag=LLC55_RS21320;product=30S ribosomal protein S12 methylthiotransferase RimO;protein_id=WP_044756621.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4538348 4538854 . - . ID=gene-LLC55_RS21325;Name=greB;gbkey=Gene;gene=greB;gene_biotype=protein_coding;locus_tag=LLC55_RS21325;old_locus_tag=LLC55_21345 NZ_CP086200.1 Protein Homology CDS 4538348 4538854 . - 0 ID=cds-WP_029217681.1;Parent=gene-LLC55_RS21325;Dbxref=Genbank:WP_029217681.1;Name=WP_029217681.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greB;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409076.1;locus_tag=LLC55_RS21325;product=transcription elongation factor GreB;protein_id=WP_029217681.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4538965 4539692 . + . ID=gene-LLC55_RS21330;Name=LLC55_RS21330;end_range=4539692,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21330;old_locus_tag=LLC55_21350;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4538965 4539692 . + 0 ID=cds-LLC55_RS21330;Parent=gene-LLC55_RS21330;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4539692,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156366.1;locus_tag=LLC55_RS21330;partial=true;product=rhomboid family intramembrane serine protease;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4539782 4540633 . + . ID=gene-LLC55_RS21335;Name=LLC55_RS21335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21335;old_locus_tag=LLC55_21355 NZ_CP086200.1 Protein Homology CDS 4539782 4540633 . + 0 ID=cds-WP_228329662.1;Parent=gene-LLC55_RS21335;Dbxref=Genbank:WP_228329662.1;Name=WP_228329662.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_082322974.1;locus_tag=LLC55_RS21335;product=IS30 family transposase;protein_id=WP_228329662.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4540666 4541324 . + . ID=gene-LLC55_RS21340;Name=LLC55_RS21340;end_range=4541324,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21340;old_locus_tag=LLC55_21360;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4540666 4541324 . + 0 ID=cds-LLC55_RS21340;Parent=gene-LLC55_RS21340;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=4541324,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_082322974.1;locus_tag=LLC55_RS21340;partial=true;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4541226 4541549 . - . ID=gene-LLC55_RS21345;Name=LLC55_RS21345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21345;old_locus_tag=LLC55_21365;partial=true;pseudo=true;start_range=.,4541226 NZ_CP086200.1 Protein Homology CDS 4541226 4541549 . - 0 ID=cds-LLC55_RS21345;Parent=gene-LLC55_RS21345;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347958.1;locus_tag=LLC55_RS21345;partial=true;product=DUF853 family protein;pseudo=true;start_range=.,4541226;transl_table=11 NZ_CP086200.1 RefSeq gene 4541844 4543427 . + . ID=gene-LLC55_RS21350;Name=LLC55_RS21350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21350;old_locus_tag=LLC55_21370 NZ_CP086200.1 Protein Homology CDS 4541844 4543427 . + 0 ID=cds-WP_041182211.1;Parent=gene-LLC55_RS21350;Dbxref=Genbank:WP_041182211.1;Name=WP_041182211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914309.1;locus_tag=LLC55_RS21350;product=transglycosylase SLT domain-containing protein;protein_id=WP_041182211.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4543834 4543909 . + . ID=gene-LLC55_RS21355;Name=LLC55_RS21355;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS21355;old_locus_tag=LLC55_21375 NZ_CP086200.1 cmsearch ncRNA 4543834 4543909 . + . ID=rna-LLC55_RS21355;Parent=gene-LLC55_RS21355;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21355;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4543834 4543909 . + . ID=exon-LLC55_RS21355-1;Parent=rna-LLC55_RS21355;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21355;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4543978 4544826 . - . ID=gene-LLC55_RS21360;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=LLC55_RS21360;old_locus_tag=LLC55_21380 NZ_CP086200.1 Protein Homology CDS 4543978 4544826 . - 0 ID=cds-WP_027703264.1;Parent=gene-LLC55_RS21360;Dbxref=Genbank:WP_027703264.1;Name=WP_027703264.1;Note=Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein.;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=asd;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409071.1;locus_tag=LLC55_RS21360;product=archaetidylserine decarboxylase;protein_id=WP_027703264.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4544823 4545473 . - . ID=gene-LLC55_RS21365;Name=LLC55_RS21365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21365;old_locus_tag=LLC55_21385 NZ_CP086200.1 Protein Homology CDS 4544823 4545473 . - 0 ID=cds-WP_011259773.1;Parent=gene-LLC55_RS21365;Dbxref=Genbank:WP_011259773.1;Name=WP_011259773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302734.1;locus_tag=LLC55_RS21365;product=SCO family protein;protein_id=WP_011259773.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4545554 4546480 . + . ID=gene-LLC55_RS21370;Name=prmB;gbkey=Gene;gene=prmB;gene_biotype=protein_coding;locus_tag=LLC55_RS21370;old_locus_tag=LLC55_21390 NZ_CP086200.1 Protein Homology CDS 4545554 4546480 . + 0 ID=cds-WP_011259772.1;Parent=gene-LLC55_RS21370;Dbxref=Genbank:WP_011259772.1;Name=WP_011259772.1;Ontology_term=GO:0018364,GO:0042273,GO:0008276,GO:0008757;gbkey=CDS;gene=prmB;go_function=protein methyltransferase activity|0008276||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=peptidyl-glutamine methylation|0018364||IEA,ribosomal large subunit biogenesis|0042273||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927455.1;locus_tag=LLC55_RS21370;product=50S ribosomal protein L3 N(5)-glutamine methyltransferase;protein_id=WP_011259772.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4546491 4547594 . + . ID=gene-LLC55_RS21375;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=LLC55_RS21375;old_locus_tag=LLC55_21395 NZ_CP086200.1 Protein Homology CDS 4546491 4547594 . + 0 ID=cds-WP_011259771.1;Parent=gene-LLC55_RS21375;Dbxref=Genbank:WP_011259771.1;Name=WP_011259771.1;Ontology_term=GO:0009073,GO:0004107;gbkey=CDS;gene=aroC;go_function=chorismate synthase activity|0004107||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914304.1;locus_tag=LLC55_RS21375;product=chorismate synthase;protein_id=WP_011259771.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4547587 4548660 . + . ID=gene-LLC55_RS21380;Name=LLC55_RS21380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21380;old_locus_tag=LLC55_21400 NZ_CP086200.1 Protein Homology CDS 4547587 4548660 . + 0 ID=cds-WP_011409070.1;Parent=gene-LLC55_RS21380;Dbxref=Genbank:WP_011409070.1;Name=WP_011409070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379384.1;locus_tag=LLC55_RS21380;product=D-glycerate dehydrogenase;protein_id=WP_011409070.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4548745 4549770 . + . ID=gene-LLC55_RS21385;Name=LLC55_RS21385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21385;old_locus_tag=LLC55_21405 NZ_CP086200.1 Protein Homology CDS 4548745 4549770 . + 0 ID=cds-WP_011259769.1;Parent=gene-LLC55_RS21385;Dbxref=Genbank:WP_011259769.1;Name=WP_011259769.1;Ontology_term=GO:0008652,GO:0004073,GO:0016620,GO:0051287;gbkey=CDS;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,NAD binding|0051287||IEA;go_process=amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437949.1;locus_tag=LLC55_RS21385;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_011259769.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4549829 4549904 . + . ID=gene-LLC55_RS21390;Name=LLC55_RS21390;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS21390;old_locus_tag=LLC55_21410 NZ_CP086200.1 cmsearch ncRNA 4549829 4549904 . + . ID=rna-LLC55_RS21390;Parent=gene-LLC55_RS21390;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21390;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4549829 4549904 . + . ID=exon-LLC55_RS21390-1;Parent=rna-LLC55_RS21390;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21390;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4550451 4552403 . + . ID=gene-LLC55_RS21395;Name=LLC55_RS21395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21395;old_locus_tag=LLC55_21415 NZ_CP086200.1 Protein Homology CDS 4550451 4552403 . + 0 ID=cds-WP_075242327.1;Parent=gene-LLC55_RS21395;Dbxref=Genbank:WP_075242327.1;Name=WP_075242327.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113385.1;locus_tag=LLC55_RS21395;product=ferrous iron transporter B;protein_id=WP_075242327.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4552400 4552807 . + . ID=gene-LLC55_RS21400;Name=LLC55_RS21400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21400;old_locus_tag=LLC55_21420 NZ_CP086200.1 Protein Homology CDS 4552400 4552807 . + 0 ID=cds-WP_053502465.1;Parent=gene-LLC55_RS21400;Dbxref=Genbank:WP_053502465.1;Name=WP_053502465.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167422.1;locus_tag=LLC55_RS21400;product=VOC family protein;protein_id=WP_053502465.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4552977 4553750 . + . ID=gene-LLC55_RS21405;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=LLC55_RS21405;old_locus_tag=LLC55_21425 NZ_CP086200.1 Protein Homology CDS 4552977 4553750 . + 0 ID=cds-WP_053502464.1;Parent=gene-LLC55_RS21405;Dbxref=Genbank:WP_053502464.1;Name=WP_053502464.1;Ontology_term=GO:0006400,GO:0009982;gbkey=CDS;gene=truA;go_function=pseudouridine synthase activity|0009982||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304909.1;locus_tag=LLC55_RS21405;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=WP_053502464.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4553747 4554415 . + . ID=gene-LLC55_RS21410;Name=LLC55_RS21410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21410;old_locus_tag=LLC55_21430 NZ_CP086200.1 Protein Homology CDS 4553747 4554415 . + 0 ID=cds-WP_011259764.1;Parent=gene-LLC55_RS21410;Dbxref=Genbank:WP_011259764.1;Name=WP_011259764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159966.1;locus_tag=LLC55_RS21410;product=phosphoribosylanthranilate isomerase;protein_id=WP_011259764.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4554819 4555745 . - . ID=gene-LLC55_RS21415;Name=LLC55_RS21415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21415;old_locus_tag=LLC55_21435 NZ_CP086200.1 Protein Homology CDS 4554819 4555745 . - 0 ID=cds-WP_069964811.1;Parent=gene-LLC55_RS21415;Dbxref=Genbank:WP_069964811.1;Name=WP_069964811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162800.1;locus_tag=LLC55_RS21415;product=LysR family transcriptional regulator;protein_id=WP_069964811.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4555851 4557068 . + . ID=gene-LLC55_RS21420;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=LLC55_RS21420;old_locus_tag=LLC55_21440 NZ_CP086200.1 Protein Homology CDS 4555851 4557068 . + 0 ID=cds-WP_044756624.1;Parent=gene-LLC55_RS21420;Dbxref=Genbank:WP_044756624.1;Name=WP_044756624.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpB;go_function=tryptophan synthase activity|0004834||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914297.1;locus_tag=LLC55_RS21420;product=tryptophan synthase subunit beta;protein_id=WP_044756624.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4557113 4557465 . + . ID=gene-LLC55_RS21425;Name=LLC55_RS21425;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21425;old_locus_tag=LLC55_21445;pseudo=true NZ_CP086200.1 Protein Homology CDS 4557113 4557465 . + 0 ID=cds-LLC55_RS21425;Parent=gene-LLC55_RS21425;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008570955.1;locus_tag=LLC55_RS21425;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4557514 4558320 . + . ID=gene-LLC55_RS21430;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=LLC55_RS21430;old_locus_tag=LLC55_21450 NZ_CP086200.1 Protein Homology CDS 4557514 4558320 . + 0 ID=cds-WP_011409067.1;Parent=gene-LLC55_RS21430;Dbxref=Genbank:WP_011409067.1;Name=WP_011409067.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpA;go_function=tryptophan synthase activity|0004834||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503808.1;locus_tag=LLC55_RS21430;product=tryptophan synthase subunit alpha;protein_id=WP_011409067.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4558640 4559527 . + . ID=gene-LLC55_RS21435;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=LLC55_RS21435;old_locus_tag=LLC55_21455 NZ_CP086200.1 Protein Homology CDS 4558640 4559527 . + 0 ID=cds-WP_011259760.1;Parent=gene-LLC55_RS21435;Dbxref=Genbank:WP_011259760.1;Name=WP_011259760.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accD;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366658.1;locus_tag=LLC55_RS21435;product=acetyl-CoA carboxylase%2C carboxyltransferase subunit beta;protein_id=WP_011259760.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4559524 4560873 . + . ID=gene-LLC55_RS21440;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=LLC55_RS21440;old_locus_tag=LLC55_21460 NZ_CP086200.1 Protein Homology CDS 4559524 4560873 . + 0 ID=cds-WP_075242328.1;Parent=gene-LLC55_RS21440;Dbxref=Genbank:WP_075242328.1;Name=WP_075242328.1;Ontology_term=GO:0005975,GO:0000287,GO:0008966,GO:0016868;gbkey=CDS;gene=glmM;go_function=magnesium ion binding|0000287||IEA,phosphoglucosamine mutase activity|0008966||IEA,intramolecular transferase activity%2C phosphotransferases|0016868||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300396.1;locus_tag=LLC55_RS21440;product=phosphoglucosamine mutase;protein_id=WP_075242328.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4560996 4561934 . + . ID=gene-LLC55_RS21445;Name=LLC55_RS21445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21445;old_locus_tag=LLC55_21465 NZ_CP086200.1 Protein Homology CDS 4560996 4561934 . + 0 ID=cds-WP_011259758.1;Parent=gene-LLC55_RS21445;Dbxref=Genbank:WP_011259758.1;Name=WP_011259758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485523.1;locus_tag=LLC55_RS21445;product=isopenicillin N synthase family oxygenase;protein_id=WP_011259758.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4562144 4562818 . + . ID=gene-LLC55_RS21450;Name=LLC55_RS21450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21450;old_locus_tag=LLC55_21470 NZ_CP086200.1 Protein Homology CDS 4562144 4562818 . + 0 ID=cds-WP_011409066.1;Parent=gene-LLC55_RS21450;Dbxref=Genbank:WP_011409066.1;Name=WP_011409066.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485525.1;locus_tag=LLC55_RS21450;product=hypothetical protein;protein_id=WP_011409066.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4562815 4565181 . + . ID=gene-LLC55_RS21455;Name=LLC55_RS21455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21455;old_locus_tag=LLC55_21475 NZ_CP086200.1 Protein Homology CDS 4562815 4565181 . + 0 ID=cds-WP_011259756.1;Parent=gene-LLC55_RS21455;Dbxref=Genbank:WP_011259756.1;Name=WP_011259756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973623.1;locus_tag=LLC55_RS21455;product=EAL domain-containing protein;protein_id=WP_011259756.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4565261 4566047 . - . ID=gene-LLC55_RS21460;Name=LLC55_RS21460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21460;old_locus_tag=LLC55_21480;partial=true;pseudo=true;start_range=.,4565261 NZ_CP086200.1 Protein Homology CDS 4565261 4566047 . - 0 ID=cds-LLC55_RS21460;Parent=gene-LLC55_RS21460;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011805842.1;locus_tag=LLC55_RS21460;partial=true;product=IS481 family transposase;pseudo=true;start_range=.,4565261;transl_table=11 NZ_CP086200.1 RefSeq gene 4566205 4566968 . + . ID=gene-LLC55_RS21465;Name=LLC55_RS21465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21465;old_locus_tag=LLC55_21485 NZ_CP086200.1 Protein Homology CDS 4566205 4566520 . + 0 ID=cds-WP_094187736.1-2;Parent=gene-LLC55_RS21465;Dbxref=Genbank:WP_094187736.1;Name=WP_094187736.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS21465;product=IS5 family transposase;protein_id=WP_094187736.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4566520 4566968 . + 2 ID=cds-WP_094187736.1-2;Parent=gene-LLC55_RS21465;Dbxref=Genbank:WP_094187736.1;Name=WP_094187736.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS21465;product=IS5 family transposase;protein_id=WP_094187736.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4567035 4567133 . + . ID=gene-LLC55_RS21470;Name=LLC55_RS21470;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21470;old_locus_tag=LLC55_21490;partial=true;pseudo=true;start_range=.,4567035 NZ_CP086200.1 Protein Homology CDS 4567035 4567133 . + 0 ID=cds-LLC55_RS21470;Parent=gene-LLC55_RS21470;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156087.1;locus_tag=LLC55_RS21470;partial=true;product=DUF3034 family protein;pseudo=true;start_range=.,4567035;transl_table=11 NZ_CP086200.1 RefSeq gene 4567133 4567561 . + . ID=gene-LLC55_RS21475;Name=LLC55_RS21475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21475;old_locus_tag=LLC55_21495 NZ_CP086200.1 Protein Homology CDS 4567133 4567561 . + 0 ID=cds-WP_011409063.1;Parent=gene-LLC55_RS21475;Dbxref=Genbank:WP_011409063.1;Name=WP_011409063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810241.1;locus_tag=LLC55_RS21475;product=group 1 truncated hemoglobin;protein_id=WP_011409063.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4567644 4567720 . - . ID=gene-LLC55_RS21480;Name=LLC55_RS21480;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS21480;old_locus_tag=LLC55_21500 NZ_CP086200.1 cmsearch ncRNA 4567644 4567720 . - . ID=rna-LLC55_RS21480;Parent=gene-LLC55_RS21480;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21480;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4567644 4567720 . - . ID=exon-LLC55_RS21480-1;Parent=rna-LLC55_RS21480;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21480;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4567911 4568711 . - . ID=gene-LLC55_RS21485;Name=LLC55_RS21485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21485;old_locus_tag=LLC55_21505 NZ_CP086200.1 Protein Homology CDS 4567911 4568711 . - 0 ID=cds-WP_011409062.1;Parent=gene-LLC55_RS21485;Dbxref=Genbank:WP_011409062.1;Name=WP_011409062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008570965.1;locus_tag=LLC55_RS21485;product=SDR family oxidoreductase;protein_id=WP_011409062.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4568824 4569579 . + . ID=gene-LLC55_RS21490;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=LLC55_RS21490;old_locus_tag=LLC55_21510 NZ_CP086200.1 Protein Homology CDS 4568824 4569579 . + 0 ID=cds-WP_011409061.1;Parent=gene-LLC55_RS21490;Dbxref=Genbank:WP_011409061.1;Name=WP_011409061.1;Ontology_term=GO:0006096,GO:0004807;gbkey=CDS;gene=tpiA;go_function=triose-phosphate isomerase activity|0004807||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156090.1;locus_tag=LLC55_RS21490;product=triose-phosphate isomerase;protein_id=WP_011409061.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4569613 4570074 . + . ID=gene-LLC55_RS21495;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=LLC55_RS21495;old_locus_tag=LLC55_21515 NZ_CP086200.1 Protein Homology CDS 4569613 4570074 . + 0 ID=cds-WP_011259752.1;Parent=gene-LLC55_RS21495;Dbxref=Genbank:WP_011259752.1;Name=WP_011259752.1;Ontology_term=GO:0043952,GO:0015450,GO:0005886;gbkey=CDS;gene=secG;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008570967.1;locus_tag=LLC55_RS21495;product=preprotein translocase subunit SecG;protein_id=WP_011259752.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4570124 4570208 . + . ID=gene-LLC55_RS21500;Name=LLC55_RS21500;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS21500;old_locus_tag=LLC55_21520 NZ_CP086200.1 tRNAscan-SE tRNA 4570124 4570208 . + . ID=rna-LLC55_RS21500;Parent=gene-LLC55_RS21500;anticodon=(pos:4570158..4570160);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21500;product=tRNA-Leu NZ_CP086200.1 tRNAscan-SE exon 4570124 4570208 . + . ID=exon-LLC55_RS21500-1;Parent=rna-LLC55_RS21500;anticodon=(pos:4570158..4570160);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21500;product=tRNA-Leu NZ_CP086200.1 RefSeq gene 4570311 4570667 . + . ID=gene-LLC55_RS21505;Name=LLC55_RS21505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21505;old_locus_tag=LLC55_21525 NZ_CP086200.1 Protein Homology CDS 4570311 4570667 . + 0 ID=cds-WP_011409060.1;Parent=gene-LLC55_RS21505;Dbxref=Genbank:WP_011409060.1;Name=WP_011409060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003467430.1;locus_tag=LLC55_RS21505;product=NADH-quinone oxidoreductase subunit A;protein_id=WP_011409060.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4570658 4571212 . + . ID=gene-LLC55_RS21510;Name=LLC55_RS21510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21510;old_locus_tag=LLC55_21530 NZ_CP086200.1 Protein Homology CDS 4570658 4571212 . + 0 ID=cds-WP_010371165.1;Parent=gene-LLC55_RS21510;Dbxref=Genbank:WP_010371165.1;Name=WP_010371165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914280.1;locus_tag=LLC55_RS21510;product=NADH-quinone oxidoreductase subunit B;protein_id=WP_010371165.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4571249 4572001 . + . ID=gene-LLC55_RS21515;Name=LLC55_RS21515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21515;old_locus_tag=LLC55_21535 NZ_CP086200.1 Protein Homology CDS 4571249 4572001 . + 0 ID=cds-WP_011259749.1;Parent=gene-LLC55_RS21515;Dbxref=Genbank:WP_011259749.1;Name=WP_011259749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927494.1;locus_tag=LLC55_RS21515;product=NADH-quinone oxidoreductase subunit C;protein_id=WP_011259749.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4571998 4573305 . + . ID=gene-LLC55_RS21520;Name=LLC55_RS21520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21520;old_locus_tag=LLC55_21540 NZ_CP086200.1 Protein Homology CDS 4571998 4573305 . + 0 ID=cds-WP_011259748.1;Parent=gene-LLC55_RS21520;Dbxref=Genbank:WP_011259748.1;Name=WP_011259748.1;Ontology_term=GO:0016651,GO:0048038,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,quinone binding|0048038||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810223.1;locus_tag=LLC55_RS21520;product=NADH-quinone oxidoreductase subunit D;protein_id=WP_011259748.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4573302 4573829 . + . ID=gene-LLC55_RS21525;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=LLC55_RS21525;old_locus_tag=LLC55_21545 NZ_CP086200.1 Protein Homology CDS 4573302 4573829 . + 0 ID=cds-WP_011259747.1;Parent=gene-LLC55_RS21525;Dbxref=Genbank:WP_011259747.1;Name=WP_011259747.1;gbkey=CDS;gene=nuoE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410460.1;locus_tag=LLC55_RS21525;product=NADH-quinone oxidoreductase subunit NuoE;protein_id=WP_011259747.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4573833 4575167 . + . ID=gene-LLC55_RS21530;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=LLC55_RS21530;old_locus_tag=LLC55_21550 NZ_CP086200.1 Protein Homology CDS 4573833 4575167 . + 0 ID=cds-WP_011259746.1;Parent=gene-LLC55_RS21530;Dbxref=Genbank:WP_011259746.1;Name=WP_011259746.1;Ontology_term=GO:0050136;gbkey=CDS;gene=nuoF;go_function=NADH dehydrogenase (quinone) activity|0050136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503795.1;locus_tag=LLC55_RS21530;product=NADH-quinone oxidoreductase subunit NuoF;protein_id=WP_011259746.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4575164 4577398 . + . ID=gene-LLC55_RS21535;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=LLC55_RS21535;old_locus_tag=LLC55_21555 NZ_CP086200.1 Protein Homology CDS 4575164 4577398 . + 0 ID=cds-WP_228329663.1;Parent=gene-LLC55_RS21535;Dbxref=Genbank:WP_228329663.1;Name=WP_228329663.1;Ontology_term=GO:0006120,GO:0050136;gbkey=CDS;gene=nuoG;go_function=NADH dehydrogenase (quinone) activity|0050136||IEA;go_process=mitochondrial electron transport%2C NADH to ubiquinone|0006120||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347938.1;locus_tag=LLC55_RS21535;product=NADH-quinone oxidoreductase subunit NuoG;protein_id=WP_228329663.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4577395 4578486 . + . ID=gene-LLC55_RS21540;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=LLC55_RS21540;old_locus_tag=LLC55_21560 NZ_CP086200.1 Protein Homology CDS 4577395 4578486 . + 0 ID=cds-WP_011259744.1;Parent=gene-LLC55_RS21540;Dbxref=Genbank:WP_011259744.1;Name=WP_011259744.1;Ontology_term=GO:0016020;gbkey=CDS;gene=nuoH;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375869.1;locus_tag=LLC55_RS21540;product=NADH-quinone oxidoreductase subunit NuoH;protein_id=WP_011259744.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4578490 4578978 . + . ID=gene-LLC55_RS21545;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=LLC55_RS21545;old_locus_tag=LLC55_21565 NZ_CP086200.1 Protein Homology CDS 4578490 4578978 . + 0 ID=cds-WP_011409057.1;Parent=gene-LLC55_RS21545;Dbxref=Genbank:WP_011409057.1;Name=WP_011409057.1;Ontology_term=GO:0016651,GO:0051539;gbkey=CDS;gene=nuoI;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927506.1;locus_tag=LLC55_RS21545;product=NADH-quinone oxidoreductase subunit NuoI;protein_id=WP_011409057.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4578983 4579645 . + . ID=gene-LLC55_RS21550;Name=LLC55_RS21550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21550;old_locus_tag=LLC55_21570 NZ_CP086200.1 Protein Homology CDS 4578983 4579645 . + 0 ID=cds-WP_024743634.1;Parent=gene-LLC55_RS21550;Dbxref=Genbank:WP_024743634.1;Name=WP_024743634.1;Ontology_term=GO:0008137;gbkey=CDS;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237526.1;locus_tag=LLC55_RS21550;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_024743634.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4579642 4579947 . + . ID=gene-LLC55_RS21555;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=LLC55_RS21555;old_locus_tag=LLC55_21575 NZ_CP086200.1 Protein Homology CDS 4579642 4579947 . + 0 ID=cds-WP_005914274.1;Parent=gene-LLC55_RS21555;Dbxref=Genbank:WP_005914274.1;Name=WP_005914274.1;gbkey=CDS;gene=nuoK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450557.1;locus_tag=LLC55_RS21555;product=NADH-quinone oxidoreductase subunit NuoK;protein_id=WP_005914274.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4579955 4582114 . + . ID=gene-LLC55_RS21560;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=LLC55_RS21560;old_locus_tag=LLC55_21580 NZ_CP086200.1 Protein Homology CDS 4579955 4582114 . + 0 ID=cds-WP_044756632.1;Parent=gene-LLC55_RS21560;Dbxref=Genbank:WP_044756632.1;Name=WP_044756632.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoL;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485563.1;locus_tag=LLC55_RS21560;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_044756632.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4582135 4583637 . + . ID=gene-LLC55_RS21565;Name=LLC55_RS21565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21565;old_locus_tag=LLC55_21585 NZ_CP086200.1 Protein Homology CDS 4582135 4583637 . + 0 ID=cds-WP_053502447.1;Parent=gene-LLC55_RS21565;Dbxref=Genbank:WP_053502447.1;Name=WP_053502447.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300411.1;locus_tag=LLC55_RS21565;product=NADH-quinone oxidoreductase subunit M;protein_id=WP_053502447.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4583674 4585134 . + . ID=gene-LLC55_RS21570;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=LLC55_RS21570;old_locus_tag=LLC55_21590 NZ_CP086200.1 Protein Homology CDS 4583674 4585134 . + 0 ID=cds-WP_069960097.1;Parent=gene-LLC55_RS21570;Dbxref=Genbank:WP_069960097.1;Name=WP_069960097.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoN;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485567.1;locus_tag=LLC55_RS21570;product=NADH-quinone oxidoreductase subunit NuoN;protein_id=WP_069960097.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4585335 4585411 . + . ID=gene-LLC55_RS21575;Name=LLC55_RS21575;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS21575;old_locus_tag=LLC55_21595 NZ_CP086200.1 tRNAscan-SE tRNA 4585335 4585411 . + . ID=rna-LLC55_RS21575;Parent=gene-LLC55_RS21575;anticodon=(pos:4585369..4585371);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21575;product=tRNA-Met NZ_CP086200.1 tRNAscan-SE exon 4585335 4585411 . + . ID=exon-LLC55_RS21575-1;Parent=rna-LLC55_RS21575;anticodon=(pos:4585369..4585371);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21575;product=tRNA-Met NZ_CP086200.1 RefSeq gene 4585609 4586199 . + . ID=gene-LLC55_RS21580;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=LLC55_RS21580;old_locus_tag=LLC55_21600 NZ_CP086200.1 Protein Homology CDS 4585609 4586199 . + 0 ID=cds-WP_011259738.1;Parent=gene-LLC55_RS21580;Dbxref=Genbank:WP_011259738.1;Name=WP_011259738.1;gbkey=CDS;gene=rimP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300413.1;locus_tag=LLC55_RS21580;product=ribosome maturation factor RimP;protein_id=WP_011259738.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4586204 4587715 . + . ID=gene-LLC55_RS21585;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=LLC55_RS21585;old_locus_tag=LLC55_21605 NZ_CP086200.1 Protein Homology CDS 4586204 4587715 . + 0 ID=cds-WP_011259737.1;Parent=gene-LLC55_RS21585;Dbxref=Genbank:WP_011259737.1;Name=WP_011259737.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660577.1;locus_tag=LLC55_RS21585;product=transcription termination factor NusA;protein_id=WP_011259737.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4587811 4590531 . + . ID=gene-LLC55_RS21590;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=LLC55_RS21590;old_locus_tag=LLC55_21610 NZ_CP086200.1 Protein Homology CDS 4587811 4590531 . + 0 ID=cds-WP_011409053.1;Parent=gene-LLC55_RS21590;Dbxref=Genbank:WP_011409053.1;Name=WP_011409053.1;Ontology_term=GO:0006413,GO:0003743,GO:0005737;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159225.1;locus_tag=LLC55_RS21590;product=translation initiation factor IF-2;protein_id=WP_011409053.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4590675 4591067 . + . ID=gene-LLC55_RS21595;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=LLC55_RS21595;old_locus_tag=LLC55_21615 NZ_CP086200.1 Protein Homology CDS 4590675 4591067 . + 0 ID=cds-WP_011259735.1;Parent=gene-LLC55_RS21595;Dbxref=Genbank:WP_011259735.1;Name=WP_011259735.1;Ontology_term=GO:0006396,GO:0019843;gbkey=CDS;gene=rbfA;go_function=rRNA binding|0019843||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051765.1;locus_tag=LLC55_RS21595;product=30S ribosome-binding factor RbfA;protein_id=WP_011259735.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4591147 4592073 . + . ID=gene-LLC55_RS21600;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=LLC55_RS21600;old_locus_tag=LLC55_21620 NZ_CP086200.1 Protein Homology CDS 4591147 4592073 . + 0 ID=cds-WP_011259734.1;Parent=gene-LLC55_RS21600;Dbxref=Genbank:WP_011259734.1;Name=WP_011259734.1;Ontology_term=GO:0006400,GO:0004730;gbkey=CDS;gene=truB;go_function=pseudouridylate synthase activity|0004730||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848688.1;locus_tag=LLC55_RS21600;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_011259734.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4592230 4592490 . + . ID=gene-LLC55_RS21605;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=LLC55_RS21605;old_locus_tag=LLC55_21625 NZ_CP086200.1 Protein Homology CDS 4592230 4592490 . + 0 ID=cds-WP_003485583.1;Parent=gene-LLC55_RS21605;Dbxref=Genbank:WP_003485583.1;Name=WP_003485583.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsO;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1;locus_tag=LLC55_RS21605;product=30S ribosomal protein S15;protein_id=WP_003485583.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4592656 4594770 . + . ID=gene-LLC55_RS21610;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=LLC55_RS21610;old_locus_tag=LLC55_21630 NZ_CP086200.1 Protein Homology CDS 4592656 4594770 . + 0 ID=cds-WP_011259733.1;Parent=gene-LLC55_RS21610;Dbxref=Genbank:WP_011259733.1;Name=WP_011259733.1;Ontology_term=GO:0006402,GO:0004654;gbkey=CDS;gene=pnp;go_function=polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259733.1;locus_tag=LLC55_RS21610;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_011259733.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4595144 4596184 . - . ID=gene-LLC55_RS21615;Name=LLC55_RS21615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21615;old_locus_tag=LLC55_21635 NZ_CP086200.1 Protein Homology CDS 4595144 4596184 . - 0 ID=cds-WP_011409052.1;Parent=gene-LLC55_RS21615;Dbxref=Genbank:WP_011409052.1;Name=WP_011409052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156103.1;locus_tag=LLC55_RS21615;product=DUF2272 domain-containing protein;protein_id=WP_011409052.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4596248 4597135 . - . ID=gene-LLC55_RS21620;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=LLC55_RS21620;old_locus_tag=LLC55_21640 NZ_CP086200.1 Protein Homology CDS 4596248 4597135 . - 0 ID=cds-WP_011259731.1;Parent=gene-LLC55_RS21620;Dbxref=Genbank:WP_011259731.1;Name=WP_011259731.1;Ontology_term=GO:0019363,GO:0004514;gbkey=CDS;gene=nadC;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=pyridine nucleotide biosynthetic process|0019363||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158758.1;locus_tag=LLC55_RS21620;product=carboxylating nicotinate-nucleotide diphosphorylase;protein_id=WP_011259731.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4597132 4597401 . - . ID=gene-LLC55_RS21625;Name=LLC55_RS21625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21625;old_locus_tag=LLC55_21645 NZ_CP086200.1 Protein Homology CDS 4597132 4597401 . - 0 ID=cds-WP_011259730.1;Parent=gene-LLC55_RS21625;Dbxref=Genbank:WP_011259730.1;Name=WP_011259730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008570984.1;locus_tag=LLC55_RS21625;product=hypothetical protein;protein_id=WP_011259730.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4597460 4597963 . + . ID=gene-LLC55_RS21630;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=LLC55_RS21630;old_locus_tag=LLC55_21650 NZ_CP086200.1 Protein Homology CDS 4597460 4597963 . + 0 ID=cds-WP_011259729.1;Parent=gene-LLC55_RS21630;Dbxref=Genbank:WP_011259729.1;Name=WP_011259729.1;Ontology_term=GO:0009152,GO:0004638,GO:0009320;gbkey=CDS;gene=purE;go_component=phosphoribosylaminoimidazole carboxylase complex|0009320||IEA;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003468225.1;locus_tag=LLC55_RS21630;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=WP_011259729.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4597960 4599105 . + . ID=gene-LLC55_RS21635;Name=LLC55_RS21635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21635;old_locus_tag=LLC55_21655 NZ_CP086200.1 Protein Homology CDS 4597960 4599105 . + 0 ID=cds-WP_011259728.1;Parent=gene-LLC55_RS21635;Dbxref=Genbank:WP_011259728.1;Name=WP_011259728.1;Ontology_term=GO:0006189,GO:0004638,GO:0005524,GO:0046872;gbkey=CDS;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051762.1;locus_tag=LLC55_RS21635;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=WP_011259728.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4599247 4599825 . - . ID=gene-LLC55_RS21640;Name=LLC55_RS21640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21640;old_locus_tag=LLC55_21660 NZ_CP086200.1 Protein Homology CDS 4599247 4599825 . - 0 ID=cds-WP_011409050.1;Parent=gene-LLC55_RS21640;Dbxref=Genbank:WP_011409050.1;Name=WP_011409050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259727.1;locus_tag=LLC55_RS21640;product=superoxide dismutase;protein_id=WP_011409050.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4599947 4600267 . + . ID=gene-LLC55_RS21645;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=LLC55_RS21645;old_locus_tag=LLC55_21665 NZ_CP086200.1 Protein Homology CDS 4599947 4600267 . + 0 ID=cds-WP_011259726.1;Parent=gene-LLC55_RS21645;Dbxref=Genbank:WP_011259726.1;Name=WP_011259726.1;Ontology_term=GO:0009055;gbkey=CDS;gene=grxD;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485599.1;locus_tag=LLC55_RS21645;product=Grx4 family monothiol glutaredoxin;protein_id=WP_011259726.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4600264 4601007 . + . ID=gene-LLC55_RS21650;Name=LLC55_RS21650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21650;old_locus_tag=LLC55_21670 NZ_CP086200.1 Protein Homology CDS 4600264 4601007 . + 0 ID=cds-WP_011259725.1;Parent=gene-LLC55_RS21650;Dbxref=Genbank:WP_011259725.1;Name=WP_011259725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503773.1;locus_tag=LLC55_RS21650;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_011259725.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4601004 4601603 . + . ID=gene-LLC55_RS21655;Name=LLC55_RS21655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21655;old_locus_tag=LLC55_21675 NZ_CP086200.1 Protein Homology CDS 4601004 4601603 . + 0 ID=cds-WP_011409048.1;Parent=gene-LLC55_RS21655;Dbxref=Genbank:WP_011409048.1;Name=WP_011409048.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810180.1;locus_tag=LLC55_RS21655;product=YhgN family NAAT transporter;protein_id=WP_011409048.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4601672 4601748 . + . ID=gene-LLC55_RS21660;Name=LLC55_RS21660;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS21660;old_locus_tag=LLC55_21680 NZ_CP086200.1 cmsearch ncRNA 4601672 4601748 . + . ID=rna-LLC55_RS21660;Parent=gene-LLC55_RS21660;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21660;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4601672 4601748 . + . ID=exon-LLC55_RS21660-1;Parent=rna-LLC55_RS21660;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21660;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4602361 4605555 . + . ID=gene-LLC55_RS21665;Name=LLC55_RS21665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21665;old_locus_tag=LLC55_21685 NZ_CP086200.1 Protein Homology CDS 4602361 4605555 . + 0 ID=cds-WP_011259723.1;Parent=gene-LLC55_RS21665;Dbxref=Genbank:WP_011259723.1;Name=WP_011259723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167812.1;locus_tag=LLC55_RS21665;product=TonB-dependent receptor;protein_id=WP_011259723.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4605662 4607047 . + . ID=gene-LLC55_RS21670;Name=ppnN;gbkey=Gene;gene=ppnN;gene_biotype=protein_coding;locus_tag=LLC55_RS21670;old_locus_tag=LLC55_21690 NZ_CP086200.1 Protein Homology CDS 4605662 4607047 . + 0 ID=cds-WP_011259722.1;Parent=gene-LLC55_RS21670;Dbxref=Genbank:WP_011259722.1;Name=WP_011259722.1;gbkey=CDS;gene=ppnN;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154671.1;locus_tag=LLC55_RS21670;product=nucleotide 5'-monophosphate nucleosidase PpnN;protein_id=WP_011259722.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4607217 4607732 . + . ID=gene-LLC55_RS21675;Name=LLC55_RS21675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21675;old_locus_tag=LLC55_21695 NZ_CP086200.1 Protein Homology CDS 4607217 4607732 . + 0 ID=cds-WP_011259721.1;Parent=gene-LLC55_RS21675;Dbxref=Genbank:WP_011259721.1;Name=WP_011259721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259721.1;locus_tag=LLC55_RS21675;product=Tfp pilus assembly protein FimT/FimU;protein_id=WP_011259721.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4607729 4608202 . + . ID=gene-LLC55_RS21680;Name=pilV;gbkey=Gene;gene=pilV;gene_biotype=protein_coding;locus_tag=LLC55_RS21680;old_locus_tag=LLC55_21700 NZ_CP086200.1 Protein Homology CDS 4607729 4608202 . + 0 ID=cds-WP_011259720.1;Parent=gene-LLC55_RS21680;Dbxref=Genbank:WP_011259720.1;Name=WP_011259720.1;gbkey=CDS;gene=pilV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259720.1;locus_tag=LLC55_RS21680;product=type IV pilus modification protein PilV;protein_id=WP_011259720.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4608199 4609365 . + . ID=gene-LLC55_RS21685;Name=LLC55_RS21685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21685;old_locus_tag=LLC55_21705 NZ_CP086200.1 Protein Homology CDS 4608199 4609365 . + 0 ID=cds-WP_011259719.1;Parent=gene-LLC55_RS21685;Dbxref=Genbank:WP_011259719.1;Name=WP_011259719.1;Ontology_term=GO:0043683;gbkey=CDS;go_process=type IV pilus assembly|0043683||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259719.1;locus_tag=LLC55_RS21685;product=PilW family protein;protein_id=WP_011259719.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4609369 4609878 . + . ID=gene-LLC55_RS21690;Name=LLC55_RS21690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21690;old_locus_tag=LLC55_21710 NZ_CP086200.1 Protein Homology CDS 4609369 4609878 . + 0 ID=cds-WP_011259718.1;Parent=gene-LLC55_RS21690;Dbxref=Genbank:WP_011259718.1;Name=WP_011259718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259718.1;locus_tag=LLC55_RS21690;product=PilX N-terminal domain-containing pilus assembly protein;protein_id=WP_011259718.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4609889 4613818 . + . ID=gene-LLC55_RS21695;Name=LLC55_RS21695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21695;old_locus_tag=LLC55_21715 NZ_CP086200.1 Protein Homology CDS 4609889 4613818 . + 0 ID=cds-WP_228329664.1;Parent=gene-LLC55_RS21695;Dbxref=Genbank:WP_228329664.1;Name=WP_228329664.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371284.1;locus_tag=LLC55_RS21695;product=PilC/PilY family type IV pilus protein;protein_id=WP_228329664.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4613831 4614280 . + . ID=gene-LLC55_RS21700;Name=LLC55_RS21700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21700;old_locus_tag=LLC55_21720 NZ_CP086200.1 Protein Homology CDS 4613831 4614280 . + 0 ID=cds-WP_042465105.1;Parent=gene-LLC55_RS21700;Dbxref=Genbank:WP_042465105.1;Name=WP_042465105.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116280.1;locus_tag=LLC55_RS21700;product=type IV pilin protein;protein_id=WP_042465105.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4614333 4614409 . + . ID=gene-LLC55_RS21705;Name=LLC55_RS21705;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS21705;old_locus_tag=LLC55_21725 NZ_CP086200.1 tRNAscan-SE tRNA 4614333 4614409 . + . ID=rna-LLC55_RS21705;Parent=gene-LLC55_RS21705;anticodon=(pos:4614367..4614369);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21705;product=tRNA-Asn NZ_CP086200.1 tRNAscan-SE exon 4614333 4614409 . + . ID=exon-LLC55_RS21705-1;Parent=rna-LLC55_RS21705;anticodon=(pos:4614367..4614369);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21705;product=tRNA-Asn NZ_CP086200.1 RefSeq gene 4614459 4615001 . - . ID=gene-LLC55_RS21710;Name=LLC55_RS21710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21710;old_locus_tag=LLC55_21730 NZ_CP086200.1 Protein Homology CDS 4614459 4615001 . - 0 ID=cds-WP_011259713.1;Parent=gene-LLC55_RS21710;Dbxref=Genbank:WP_011259713.1;Name=WP_011259713.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371290.1;locus_tag=LLC55_RS21710;product=GspH/FimT family pseudopilin;protein_id=WP_011259713.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4615140 4617161 . + . ID=gene-LLC55_RS21715;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=LLC55_RS21715;old_locus_tag=LLC55_21735 NZ_CP086200.1 Protein Homology CDS 4615140 4617161 . + 0 ID=cds-WP_011259712.1;Parent=gene-LLC55_RS21715;Dbxref=Genbank:WP_011259712.1;Name=WP_011259712.1;Ontology_term=GO:0006289,GO:0003677,GO:0005515,GO:0005524,GO:0016787,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,protein binding|0005515||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037621.1;locus_tag=LLC55_RS21715;product=excinuclease ABC subunit UvrB;protein_id=WP_011259712.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4617257 4617331 . + . ID=gene-LLC55_RS21720;Name=LLC55_RS21720;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS21720;old_locus_tag=LLC55_21740 NZ_CP086200.1 tRNAscan-SE tRNA 4617257 4617331 . + . ID=rna-LLC55_RS21720;Parent=gene-LLC55_RS21720;anticodon=(pos:4617289..4617291);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21720;product=tRNA-Val NZ_CP086200.1 tRNAscan-SE exon 4617257 4617331 . + . ID=exon-LLC55_RS21720-1;Parent=rna-LLC55_RS21720;anticodon=(pos:4617289..4617291);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21720;product=tRNA-Val NZ_CP086200.1 RefSeq pseudogene 4617588 4617737 . + . ID=gene-LLC55_RS21725;Name=LLC55_RS21725;end_range=4617737,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21725;old_locus_tag=LLC55_21745;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4617588 4617737 . + 0 ID=cds-LLC55_RS21725;Parent=gene-LLC55_RS21725;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4617737,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408310.1;locus_tag=LLC55_RS21725;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4617770 4618651 . - . ID=gene-LLC55_RS21730;Name=LLC55_RS21730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21730;old_locus_tag=LLC55_21750;pseudo=true NZ_CP086200.1 Protein Homology CDS 4617770 4618651 . - 0 ID=cds-LLC55_RS21730;Parent=gene-LLC55_RS21730;Note=frameshifted%3B internal stop;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=LLC55_RS21730;product=integrase core domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4618738 4618920 . + . ID=gene-LLC55_RS21735;Name=LLC55_RS21735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21735;old_locus_tag=LLC55_21755 NZ_CP086200.1 Protein Homology CDS 4618738 4618920 . + 0 ID=cds-WP_012445471.1;Parent=gene-LLC55_RS21735;Dbxref=Genbank:WP_012445471.1;Name=WP_012445471.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: protein motif:HMM:NF025063.2;locus_tag=LLC55_RS21735;product=integrase core domain-containing protein;protein_id=WP_012445471.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4618947 4619128 . - . ID=gene-LLC55_RS21740;Name=LLC55_RS21740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21740;old_locus_tag=LLC55_21760;partial=true;pseudo=true;start_range=.,4618947 NZ_CP086200.1 Protein Homology CDS 4618947 4619128 . - 0 ID=cds-LLC55_RS21740;Parent=gene-LLC55_RS21740;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930238.1;locus_tag=LLC55_RS21740;partial=true;product=LacI family DNA-binding transcriptional regulator;pseudo=true;start_range=.,4618947;transl_table=11 NZ_CP086200.1 RefSeq gene 4619453 4621357 . + . ID=gene-LLC55_RS21745;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=LLC55_RS21745;old_locus_tag=LLC55_21765 NZ_CP086200.1 Protein Homology CDS 4619453 4621357 . + 0 ID=cds-WP_011409044.1;Parent=gene-LLC55_RS21745;Dbxref=Genbank:WP_011409044.1;Name=WP_011409044.1;Ontology_term=GO:0006435,GO:0004829,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303507.1;locus_tag=LLC55_RS21745;product=threonine--tRNA ligase;protein_id=WP_011409044.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4621406 4621948 . + . ID=gene-LLC55_RS21750;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=LLC55_RS21750;old_locus_tag=LLC55_21770 NZ_CP086200.1 Protein Homology CDS 4621406 4621948 . + 0 ID=cds-WP_080098376.1;Parent=gene-LLC55_RS21750;Dbxref=Genbank:WP_080098376.1;Name=WP_080098376.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660568.1;locus_tag=LLC55_RS21750;product=translation initiation factor IF-3;protein_id=WP_080098376.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4622197 4622394 . + . ID=gene-LLC55_RS21755;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=LLC55_RS21755;old_locus_tag=LLC55_21775 NZ_CP086200.1 Protein Homology CDS 4622197 4622394 . + 0 ID=cds-WP_002811096.1;Parent=gene-LLC55_RS21755;Dbxref=Genbank:WP_002811096.1;Name=WP_002811096.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmI;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410436.1;locus_tag=LLC55_RS21755;product=50S ribosomal protein L35;protein_id=WP_002811096.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4622405 4622764 . + . ID=gene-LLC55_RS21760;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=LLC55_RS21760;old_locus_tag=LLC55_21780 NZ_CP086200.1 Protein Homology CDS 4622405 4622764 . + 0 ID=cds-WP_003484828.1;Parent=gene-LLC55_RS21760;Dbxref=Genbank:WP_003484828.1;Name=WP_003484828.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplT;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000124858.1;locus_tag=LLC55_RS21760;product=50S ribosomal protein L20;protein_id=WP_003484828.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4623019 4624014 . + . ID=gene-LLC55_RS21765;Name=LLC55_RS21765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21765;old_locus_tag=LLC55_21785 NZ_CP086200.1 Protein Homology CDS 4623019 4624014 . + 0 ID=cds-WP_011259704.1;Parent=gene-LLC55_RS21765;Dbxref=Genbank:WP_011259704.1;Name=WP_011259704.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299936.1;locus_tag=LLC55_RS21765;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_011259704.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4624123 4626501 . + . ID=gene-LLC55_RS21770;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=LLC55_RS21770;old_locus_tag=LLC55_21790 NZ_CP086200.1 Protein Homology CDS 4624123 4626501 . + 0 ID=cds-WP_011259703.1;Parent=gene-LLC55_RS21770;Dbxref=Genbank:WP_011259703.1;Name=WP_011259703.1;Ontology_term=GO:0006432,GO:0004826,GO:0009328;gbkey=CDS;gene=pheT;go_component=phenylalanine-tRNA ligase complex|0009328||IEA;go_function=phenylalanine-tRNA ligase activity|0004826||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903311.1;locus_tag=LLC55_RS21770;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_011259703.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4626523 4626822 . + . ID=gene-LLC55_RS21775;Name=LLC55_RS21775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21775;old_locus_tag=LLC55_21795 NZ_CP086200.1 Protein Homology CDS 4626523 4626822 . + 0 ID=cds-WP_002811076.1;Parent=gene-LLC55_RS21775;Dbxref=Genbank:WP_002811076.1;Name=WP_002811076.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811076.1;locus_tag=LLC55_RS21775;product=integration host factor subunit alpha;protein_id=WP_002811076.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4626803 4627159 . + . ID=gene-LLC55_RS21780;Name=LLC55_RS21780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21780;old_locus_tag=LLC55_21800 NZ_CP086200.1 Protein Homology CDS 4626803 4627159 . + 0 ID=cds-WP_005995911.1;Parent=gene-LLC55_RS21780;Dbxref=Genbank:WP_005995911.1;Name=WP_005995911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019182707.1;locus_tag=LLC55_RS21780;product=MerR family transcriptional regulator;protein_id=WP_005995911.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4627220 4627296 . + . ID=gene-LLC55_RS21785;Name=LLC55_RS21785;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS21785;old_locus_tag=LLC55_21805 NZ_CP086200.1 tRNAscan-SE tRNA 4627220 4627296 . + . ID=rna-LLC55_RS21785;Parent=gene-LLC55_RS21785;anticodon=(pos:4627254..4627256);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21785;product=tRNA-Pro NZ_CP086200.1 tRNAscan-SE exon 4627220 4627296 . + . ID=exon-LLC55_RS21785-1;Parent=rna-LLC55_RS21785;anticodon=(pos:4627254..4627256);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21785;product=tRNA-Pro NZ_CP086200.1 RefSeq gene 4627768 4628466 . + . ID=gene-LLC55_RS21790;Name=LLC55_RS21790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21790;old_locus_tag=LLC55_21810 NZ_CP086200.1 Protein Homology CDS 4627768 4628466 . + 0 ID=cds-WP_011259702.1;Parent=gene-LLC55_RS21790;Dbxref=Genbank:WP_011259702.1;Name=WP_011259702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112207.1;locus_tag=LLC55_RS21790;product=polysaccharide export protein;protein_id=WP_011259702.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4628448 4629887 . + . ID=gene-LLC55_RS21795;Name=LLC55_RS21795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21795;old_locus_tag=LLC55_21815 NZ_CP086200.1 Protein Homology CDS 4628448 4629887 . + 0 ID=cds-WP_027704192.1;Parent=gene-LLC55_RS21795;Dbxref=Genbank:WP_027704192.1;Name=WP_027704192.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157116.1;locus_tag=LLC55_RS21795;product=GumC family protein;protein_id=WP_027704192.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4630131 4631585 . + . ID=gene-LLC55_RS21800;Name=LLC55_RS21800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21800;old_locus_tag=LLC55_21820 NZ_CP086200.1 Protein Homology CDS 4630131 4631585 . + 0 ID=cds-WP_011409041.1;Parent=gene-LLC55_RS21800;Dbxref=Genbank:WP_011409041.1;Name=WP_011409041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914017.1;locus_tag=LLC55_RS21800;product=undecaprenyl-phosphate glucose phosphotransferase;protein_id=WP_011409041.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4631680 4632969 . + . ID=gene-LLC55_RS21805;Name=LLC55_RS21805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21805;old_locus_tag=LLC55_21825 NZ_CP086200.1 Protein Homology CDS 4631680 4632969 . + 0 ID=cds-WP_049756340.1;Parent=gene-LLC55_RS21805;Dbxref=Genbank:WP_049756340.1;Name=WP_049756340.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117349.1;locus_tag=LLC55_RS21805;product=hypothetical protein;protein_id=WP_049756340.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4632966 4634057 . + . ID=gene-LLC55_RS21810;Name=LLC55_RS21810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21810;old_locus_tag=LLC55_21830 NZ_CP086200.1 Protein Homology CDS 4632966 4634057 . + 0 ID=cds-WP_011259698.1;Parent=gene-LLC55_RS21810;Dbxref=Genbank:WP_011259698.1;Name=WP_011259698.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574566.1;locus_tag=LLC55_RS21810;product=acyltransferase family protein;protein_id=WP_011259698.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4634074 4635150 . + . ID=gene-LLC55_RS21815;Name=LLC55_RS21815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21815;old_locus_tag=LLC55_21835 NZ_CP086200.1 Protein Homology CDS 4634074 4635150 . + 0 ID=cds-WP_011409040.1;Parent=gene-LLC55_RS21815;Dbxref=Genbank:WP_011409040.1;Name=WP_011409040.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502860.1;locus_tag=LLC55_RS21815;product=acyltransferase family protein;protein_id=WP_011409040.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4635218 4636360 . + . ID=gene-LLC55_RS21820;Name=gumH;gbkey=Gene;gene=gumH;gene_biotype=protein_coding;locus_tag=LLC55_RS21820;old_locus_tag=LLC55_21840 NZ_CP086200.1 Protein Homology CDS 4635218 4636360 . + 0 ID=cds-WP_011259696.1;Parent=gene-LLC55_RS21820;Dbxref=Genbank:WP_011259696.1;Name=WP_011259696.1;gbkey=CDS;gene=gumH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484848.1;locus_tag=LLC55_RS21820;product=GDP-mannose:cellobiosyl-diphosphopolyprenol alpha-mannosyltransferase;protein_id=WP_011259696.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4636357 4637406 . + . ID=gene-LLC55_RS21825;Name=LLC55_RS21825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21825;old_locus_tag=LLC55_21845 NZ_CP086200.1 Protein Homology CDS 4636357 4637406 . + 0 ID=cds-WP_011409039.1;Parent=gene-LLC55_RS21825;Dbxref=Genbank:WP_011409039.1;Name=WP_011409039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157110.1;locus_tag=LLC55_RS21825;product=glycosyltransferase;protein_id=WP_011409039.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4637424 4638917 . + . ID=gene-LLC55_RS21830;Name=LLC55_RS21830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21830;old_locus_tag=LLC55_21850 NZ_CP086200.1 Protein Homology CDS 4637424 4638917 . + 0 ID=cds-WP_011409038.1;Parent=gene-LLC55_RS21830;Dbxref=Genbank:WP_011409038.1;Name=WP_011409038.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157109.1;locus_tag=LLC55_RS21830;product=lipopolysaccharide biosynthesis protein;protein_id=WP_011409038.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4638982 4640178 . + . ID=gene-LLC55_RS21835;Name=LLC55_RS21835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21835;old_locus_tag=LLC55_21855 NZ_CP086200.1 Protein Homology CDS 4638982 4640178 . + 0 ID=cds-WP_011409037.1;Parent=gene-LLC55_RS21835;Dbxref=Genbank:WP_011409037.1;Name=WP_011409037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363526.1;locus_tag=LLC55_RS21835;product=glycosyltransferase;protein_id=WP_011409037.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4640215 4641009 . + . ID=gene-LLC55_RS21840;Name=LLC55_RS21840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21840;old_locus_tag=LLC55_21860 NZ_CP086200.1 Protein Homology CDS 4640215 4641009 . + 0 ID=cds-WP_011259692.1;Parent=gene-LLC55_RS21840;Dbxref=Genbank:WP_011259692.1;Name=WP_011259692.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484852.1;locus_tag=LLC55_RS21840;product=polysaccharide pyruvyl transferase family protein;protein_id=WP_011259692.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4641014 4641808 . + . ID=gene-LLC55_RS21845;Name=LLC55_RS21845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21845;old_locus_tag=LLC55_21865 NZ_CP086200.1 Protein Homology CDS 4641014 4641808 . + 0 ID=cds-WP_042465094.1;Parent=gene-LLC55_RS21845;Dbxref=Genbank:WP_042465094.1;Name=WP_042465094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157106.1;locus_tag=LLC55_RS21845;product=WecB/TagA/CpsF family glycosyltransferase;protein_id=WP_042465094.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4641847 4642308 . + . ID=gene-LLC55_RS21850;Name=LLC55_RS21850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21850;old_locus_tag=LLC55_21870 NZ_CP086200.1 Protein Homology CDS 4641847 4642308 . + 0 ID=cds-WP_011409035.1;Parent=gene-LLC55_RS21850;Dbxref=Genbank:WP_011409035.1;Name=WP_011409035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502866.1;locus_tag=LLC55_RS21850;product=cupin domain-containing protein;protein_id=WP_011409035.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4642397 4643397 . + . ID=gene-LLC55_RS21855;Name=LLC55_RS21855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21855;old_locus_tag=LLC55_21875;pseudo=true NZ_CP086200.1 Protein Homology CDS 4642397 4643397 . + 0 ID=cds-LLC55_RS21855;Parent=gene-LLC55_RS21855;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173582.1;locus_tag=LLC55_RS21855;product=TraB/GumN family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4643515 4644597 . - . ID=gene-LLC55_RS21860;Name=LLC55_RS21860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21860;old_locus_tag=LLC55_21880 NZ_CP086200.1 Protein Homology CDS 4643515 4644597 . - 0 ID=cds-WP_011409034.1;Parent=gene-LLC55_RS21860;Dbxref=Genbank:WP_011409034.1;Name=WP_011409034.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011000070.1;locus_tag=LLC55_RS21860;product=IS630 family transposase;protein_id=WP_011409034.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4645119 4645515 . - . ID=gene-LLC55_RS21865;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=LLC55_RS21865;old_locus_tag=LLC55_21885 NZ_CP086200.1 cmsearch tmRNA 4645119 4645515 . - . ID=rna-LLC55_RS21865;Parent=gene-LLC55_RS21865;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21865;product=transfer-messenger RNA NZ_CP086200.1 cmsearch exon 4645119 4645515 . - . ID=exon-LLC55_RS21865-1;Parent=rna-LLC55_RS21865;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21865;product=transfer-messenger RNA NZ_CP086200.1 RefSeq pseudogene 4645651 4647297 . + . ID=gene-LLC55_RS21870;Name=LLC55_RS21870;end_range=4647297,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21870;old_locus_tag=LLC55_21890;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4645651 4647297 . + 0 ID=cds-LLC55_RS21870;Parent=gene-LLC55_RS21870;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4647297,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163234.1;locus_tag=LLC55_RS21870;partial=true;product=serine peptidase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4647388 4647924 . - . ID=gene-LLC55_RS21875;Name=LLC55_RS21875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21875;old_locus_tag=LLC55_21895 NZ_CP086200.1 Protein Homology CDS 4647388 4647924 . - 0 ID=cds-WP_011409032.1;Parent=gene-LLC55_RS21875;Dbxref=Genbank:WP_011409032.1;Name=WP_011409032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157093.1;locus_tag=LLC55_RS21875;product=lipocalin family protein;protein_id=WP_011409032.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4648114 4648189 . + . ID=gene-LLC55_RS21880;Name=LLC55_RS21880;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS21880;old_locus_tag=LLC55_21900 NZ_CP086200.1 tRNAscan-SE tRNA 4648114 4648189 . + . ID=rna-LLC55_RS21880;Parent=gene-LLC55_RS21880;anticodon=(pos:4648147..4648149);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21880;product=tRNA-Phe NZ_CP086200.1 tRNAscan-SE exon 4648114 4648189 . + . ID=exon-LLC55_RS21880-1;Parent=rna-LLC55_RS21880;anticodon=(pos:4648147..4648149);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS21880;product=tRNA-Phe NZ_CP086200.1 RefSeq gene 4648194 4648661 . - . ID=gene-LLC55_RS21885;Name=LLC55_RS21885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21885;old_locus_tag=LLC55_21905 NZ_CP086200.1 Protein Homology CDS 4648194 4648661 . - 0 ID=cds-WP_181718264.1;Parent=gene-LLC55_RS21885;Dbxref=Genbank:WP_181718264.1;Name=WP_181718264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013958182.1;locus_tag=LLC55_RS21885;product=hypothetical protein;protein_id=WP_181718264.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4648642 4648932 . - . ID=gene-LLC55_RS21890;Name=LLC55_RS21890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21890;old_locus_tag=LLC55_21910 NZ_CP086200.1 GeneMarkS-2+ CDS 4648642 4648932 . - 0 ID=cds-WP_011409031.1;Parent=gene-LLC55_RS21890;Dbxref=Genbank:WP_011409031.1;Name=WP_011409031.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS21890;product=hypothetical protein;protein_id=WP_011409031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4649431 4650462 . + . ID=gene-LLC55_RS21900;Name=LLC55_RS21900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21900;old_locus_tag=LLC55_21920 NZ_CP086200.1 Protein Homology CDS 4649431 4650462 . + 0 ID=cds-WP_042465093.1;Parent=gene-LLC55_RS21900;Dbxref=Genbank:WP_042465093.1;Name=WP_042465093.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259143.1;locus_tag=LLC55_RS21900;product=IS630 family transposase;protein_id=WP_042465093.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4650444 4651019 . - . ID=gene-LLC55_RS21905;Name=LLC55_RS21905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21905;old_locus_tag=LLC55_21925 NZ_CP086200.1 Protein Homology CDS 4650444 4651019 . - 0 ID=cds-WP_011409029.1;Parent=gene-LLC55_RS21905;Dbxref=Genbank:WP_011409029.1;Name=WP_011409029.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033447.1;locus_tag=LLC55_RS21905;product=BrxE family protein;protein_id=WP_011409029.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4651051 4651341 . - . ID=gene-LLC55_RS21910;Name=LLC55_RS21910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21910;old_locus_tag=LLC55_21930 NZ_CP086200.1 Protein Homology CDS 4651051 4651341 . - 0 ID=cds-WP_228329665.1;Parent=gene-LLC55_RS21910;Dbxref=Genbank:WP_228329665.1;Name=WP_228329665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409028.1;locus_tag=LLC55_RS21910;product=hypothetical protein;protein_id=WP_228329665.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4651706 4652305 . + . ID=gene-LLC55_RS21915;Name=LLC55_RS21915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21915;old_locus_tag=LLC55_21935 NZ_CP086200.1 Protein Homology CDS 4651706 4652305 . + 0 ID=cds-WP_011409027.1;Parent=gene-LLC55_RS21915;Dbxref=Genbank:WP_011409027.1;Name=WP_011409027.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409027.1;locus_tag=LLC55_RS21915;product=type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein;protein_id=WP_011409027.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4652302 4653225 . + . ID=gene-LLC55_RS21920;Name=LLC55_RS21920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21920;old_locus_tag=LLC55_21940 NZ_CP086200.1 Protein Homology CDS 4652302 4653225 . + 0 ID=cds-WP_011259680.1;Parent=gene-LLC55_RS21920;Dbxref=Genbank:WP_011259680.1;Name=WP_011259680.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259680.1;locus_tag=LLC55_RS21920;product=nucleotidyl transferase AbiEii/AbiGii toxin family protein;protein_id=WP_011259680.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4653305 4653775 . - . ID=gene-LLC55_RS21925;Name=LLC55_RS21925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21925;old_locus_tag=LLC55_21945 NZ_CP086200.1 GeneMarkS-2+ CDS 4653305 4653775 . - 0 ID=cds-WP_228329666.1;Parent=gene-LLC55_RS21925;Dbxref=Genbank:WP_228329666.1;Name=WP_228329666.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS21925;product=helix-turn-helix domain-containing protein;protein_id=WP_228329666.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4654241 4654483 . + . ID=gene-LLC55_RS21930;Name=LLC55_RS21930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21930;old_locus_tag=LLC55_21950 NZ_CP086200.1 Protein Homology CDS 4654241 4654483 . + 0 ID=cds-WP_011409025.1;Parent=gene-LLC55_RS21930;Dbxref=Genbank:WP_011409025.1;Name=WP_011409025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409025.1;locus_tag=LLC55_RS21930;product=hypothetical protein;protein_id=WP_011409025.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4654935 4655900 . - . ID=gene-LLC55_RS21935;Name=LLC55_RS21935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21935;old_locus_tag=LLC55_21955;pseudo=true NZ_CP086200.1 Protein Homology CDS 4654935 4655900 . - 0 ID=cds-LLC55_RS21935;Parent=gene-LLC55_RS21935;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS21935;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4655995 4656483 . + . ID=gene-LLC55_RS21940;Name=LLC55_RS21940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21940;old_locus_tag=LLC55_21960 NZ_CP086200.1 Protein Homology CDS 4655995 4656483 . + 0 ID=cds-WP_011409022.1;Parent=gene-LLC55_RS21940;Dbxref=Genbank:WP_011409022.1;Name=WP_011409022.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299957.1;locus_tag=LLC55_RS21940;product=hypothetical protein;protein_id=WP_011409022.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4656500 4657032 . - . ID=gene-LLC55_RS21945;Name=LLC55_RS21945;end_range=4657032,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21945;old_locus_tag=LLC55_21965;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4656500 4657032 . - 0 ID=cds-LLC55_RS21945;Parent=gene-LLC55_RS21945;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4657032,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448487.1;locus_tag=LLC55_RS21945;partial=true;product=methyltransferase domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4657052 4658434 . - . ID=gene-LLC55_RS21950;Name=LLC55_RS21950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21950;old_locus_tag=LLC55_21970;pseudo=true NZ_CP086200.1 Protein Homology CDS 4657052 4658434 . - 0 ID=cds-LLC55_RS21950;Parent=gene-LLC55_RS21950;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407283.1;locus_tag=LLC55_RS21950;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4658546 4658698 . - . ID=gene-LLC55_RS21955;Name=LLC55_RS21955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS21955;old_locus_tag=LLC55_21975;partial=true;pseudo=true;start_range=.,4658546 NZ_CP086200.1 Protein Homology CDS 4658546 4658698 . - 0 ID=cds-LLC55_RS21955;Parent=gene-LLC55_RS21955;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363483.1;locus_tag=LLC55_RS21955;partial=true;product=SAM-dependent methyltransferase;pseudo=true;start_range=.,4658546;transl_table=11 NZ_CP086200.1 RefSeq gene 4659396 4661018 . + . ID=gene-LLC55_RS21960;Name=LLC55_RS21960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21960;old_locus_tag=LLC55_21980 NZ_CP086200.1 Protein Homology CDS 4659396 4661018 . + 0 ID=cds-WP_011409018.1;Parent=gene-LLC55_RS21960;Dbxref=Genbank:WP_011409018.1;Name=WP_011409018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347876.1;locus_tag=LLC55_RS21960;product=histidine kinase famiy protein;protein_id=WP_011409018.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4661383 4661661 . - . ID=gene-LLC55_RS21965;Name=LLC55_RS21965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21965;old_locus_tag=LLC55_21985 NZ_CP086200.1 Protein Homology CDS 4661383 4661661 . - 0 ID=cds-WP_027703322.1;Parent=gene-LLC55_RS21965;Dbxref=Genbank:WP_027703322.1;Name=WP_027703322.1;Ontology_term=GO:0005506;gbkey=CDS;go_function=iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157086.1;locus_tag=LLC55_RS21965;product=oxidative damage protection protein;protein_id=WP_027703322.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4661685 4662758 . - . ID=gene-LLC55_RS21970;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=LLC55_RS21970;old_locus_tag=LLC55_21990 NZ_CP086200.1 Protein Homology CDS 4661685 4662758 . - 0 ID=cds-WP_011259671.1;Parent=gene-LLC55_RS21970;Dbxref=Genbank:WP_011259671.1;Name=WP_011259671.1;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0004844;gbkey=CDS;gene=mutY;go_function=uracil DNA N-glycosylase activity|0004844||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157085.1;locus_tag=LLC55_RS21970;product=A/G-specific adenine glycosylase;protein_id=WP_011259671.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4662782 4662858 . - . ID=gene-LLC55_RS21975;Name=LLC55_RS21975;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS21975;old_locus_tag=LLC55_21995 NZ_CP086200.1 cmsearch ncRNA 4662782 4662858 . - . ID=rna-LLC55_RS21975;Parent=gene-LLC55_RS21975;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21975;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4662782 4662858 . - . ID=exon-LLC55_RS21975-1;Parent=rna-LLC55_RS21975;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS21975;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4663237 4664853 . - . ID=gene-LLC55_RS21980;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=LLC55_RS21980;old_locus_tag=LLC55_22000 NZ_CP086200.1 Protein Homology CDS 4663237 4664853 . - 0 ID=cds-WP_042465086.1;Parent=gene-LLC55_RS21980;Dbxref=Genbank:WP_042465086.1;Name=WP_042465086.1;Ontology_term=GO:0009306,GO:0003924,GO:0005047;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157084.1;locus_tag=LLC55_RS21980;product=signal recognition particle-docking protein FtsY;protein_id=WP_042465086.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4665058 4665774 . - . ID=gene-LLC55_RS21985;Name=LLC55_RS21985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21985;old_locus_tag=LLC55_22005 NZ_CP086200.1 Protein Homology CDS 4665058 4665774 . - 0 ID=cds-WP_011409015.1;Parent=gene-LLC55_RS21985;Dbxref=Genbank:WP_011409015.1;Name=WP_011409015.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965956.1;locus_tag=LLC55_RS21985;product=AraC family transcriptional regulator;protein_id=WP_011409015.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4665932 4666870 . + . ID=gene-LLC55_RS21990;Name=LLC55_RS21990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21990;old_locus_tag=LLC55_22010 NZ_CP086200.1 Protein Homology CDS 4665932 4666870 . + 0 ID=cds-WP_011409014.1;Parent=gene-LLC55_RS21990;Dbxref=Genbank:WP_011409014.1;Name=WP_011409014.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810965.1;locus_tag=LLC55_RS21990;product=proline racemase family protein;protein_id=WP_011409014.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4666870 4668132 . + . ID=gene-LLC55_RS21995;Name=LLC55_RS21995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS21995;old_locus_tag=LLC55_22015 NZ_CP086200.1 Protein Homology CDS 4666870 4668132 . + 0 ID=cds-WP_011259667.1;Parent=gene-LLC55_RS21995;Dbxref=Genbank:WP_011259667.1;Name=WP_011259667.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363454.1;locus_tag=LLC55_RS21995;product=FAD-dependent oxidoreductase;protein_id=WP_011259667.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4668129 4668374 . + . ID=gene-LLC55_RS22000;Name=LLC55_RS22000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22000;old_locus_tag=LLC55_22020 NZ_CP086200.1 Protein Homology CDS 4668129 4668374 . + 0 ID=cds-WP_011259666.1;Parent=gene-LLC55_RS22000;Dbxref=Genbank:WP_011259666.1;Name=WP_011259666.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301582.1;locus_tag=LLC55_RS22000;product=2Fe-2S iron-sulfur cluster-binding protein;protein_id=WP_011259666.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4668367 4669680 . + . ID=gene-LLC55_RS22005;Name=LLC55_RS22005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22005;old_locus_tag=LLC55_22025 NZ_CP086200.1 Protein Homology CDS 4668367 4669680 . + 0 ID=cds-WP_229001903.1;Parent=gene-LLC55_RS22005;Dbxref=Genbank:WP_229001903.1;Name=WP_229001903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172038.1;locus_tag=LLC55_RS22005;product=FAD/NAD(P)-binding oxidoreductase;protein_id=WP_229001903.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4669677 4670585 . + . ID=gene-LLC55_RS22010;Name=LLC55_RS22010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22010;old_locus_tag=LLC55_22030 NZ_CP086200.1 Protein Homology CDS 4669677 4670585 . + 0 ID=cds-WP_011259664.1;Parent=gene-LLC55_RS22010;Dbxref=Genbank:WP_011259664.1;Name=WP_011259664.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451841.1;locus_tag=LLC55_RS22010;product=dihydrodipicolinate synthase family protein;protein_id=WP_011259664.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4670796 4672412 . + . ID=gene-LLC55_RS22015;Name=LLC55_RS22015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22015;old_locus_tag=LLC55_22035 NZ_CP086200.1 Protein Homology CDS 4670796 4672412 . + 0 ID=cds-WP_011259663.1;Parent=gene-LLC55_RS22015;Dbxref=Genbank:WP_011259663.1;Name=WP_011259663.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173723.1;locus_tag=LLC55_RS22015;product=aldehyde dehydrogenase family protein;protein_id=WP_011259663.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4672409 4673608 . + . ID=gene-LLC55_RS22020;Name=LLC55_RS22020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22020;old_locus_tag=LLC55_22040 NZ_CP086200.1 Protein Homology CDS 4672409 4673608 . + 0 ID=cds-WP_011409012.1;Parent=gene-LLC55_RS22020;Dbxref=Genbank:WP_011409012.1;Name=WP_011409012.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157076.1;locus_tag=LLC55_RS22020;product=Xaa-Pro peptidase family protein;protein_id=WP_011409012.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4673726 4675558 . + . ID=gene-LLC55_RS22025;Name=LLC55_RS22025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22025;old_locus_tag=LLC55_22045 NZ_CP086200.1 Protein Homology CDS 4673726 4675558 . + 0 ID=cds-WP_069964571.1;Parent=gene-LLC55_RS22025;Dbxref=Genbank:WP_069964571.1;Name=WP_069964571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159284.1;locus_tag=LLC55_RS22025;product=DUF885 family protein;protein_id=WP_069964571.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4675555 4677420 . + . ID=gene-LLC55_RS22030;Name=LLC55_RS22030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22030;old_locus_tag=LLC55_22050 NZ_CP086200.1 Protein Homology CDS 4675555 4677420 . + 0 ID=cds-WP_069964570.1;Parent=gene-LLC55_RS22030;Dbxref=Genbank:WP_069964570.1;Name=WP_069964570.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914076.1;locus_tag=LLC55_RS22030;product=DUF885 family protein;protein_id=WP_069964570.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4677483 4679069 . + . ID=gene-LLC55_RS22035;Name=LLC55_RS22035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22035;old_locus_tag=LLC55_22055 NZ_CP086200.1 Protein Homology CDS 4677483 4679069 . + 0 ID=cds-WP_011409009.1;Parent=gene-LLC55_RS22035;Dbxref=Genbank:WP_011409009.1;Name=WP_011409009.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484927.1;locus_tag=LLC55_RS22035;product=APC family permease;protein_id=WP_011409009.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4679059 4681398 . + . ID=gene-LLC55_RS22040;Name=LLC55_RS22040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22040;old_locus_tag=LLC55_22060 NZ_CP086200.1 Protein Homology CDS 4679059 4681398 . + 0 ID=cds-WP_069959933.1;Parent=gene-LLC55_RS22040;Dbxref=Genbank:WP_069959933.1;Name=WP_069959933.1;Ontology_term=GO:0006508;gbkey=CDS;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154742.1;locus_tag=LLC55_RS22040;product=S9 family peptidase;protein_id=WP_069959933.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4681398 4683115 . + . ID=gene-LLC55_RS22045;Name=LLC55_RS22045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22045;old_locus_tag=LLC55_22065;pseudo=true NZ_CP086200.1 Protein Homology CDS 4681398 4683115 . + 0 ID=cds-LLC55_RS22045;Parent=gene-LLC55_RS22045;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472147.1;locus_tag=LLC55_RS22045;product=DUF5597 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4683112 4683408 . + . ID=gene-LLC55_RS22050;Name=LLC55_RS22050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22050;old_locus_tag=LLC55_22070 NZ_CP086200.1 Protein Homology CDS 4683112 4683408 . + 0 ID=cds-WP_069959930.1;Parent=gene-LLC55_RS22050;Dbxref=Genbank:WP_069959930.1;Name=WP_069959930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378174.1;locus_tag=LLC55_RS22050;product=hypothetical protein;protein_id=WP_069959930.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4683616 4685187 . - . ID=gene-LLC55_RS22055;Name=LLC55_RS22055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22055;old_locus_tag=LLC55_22075 NZ_CP086200.1 Protein Homology CDS 4683616 4685187 . - 0 ID=cds-WP_011259652.1;Parent=gene-LLC55_RS22055;Dbxref=Genbank:WP_011259652.1;Name=WP_011259652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303782.1;locus_tag=LLC55_RS22055;product=S53 family peptidase;protein_id=WP_011259652.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4685651 4688008 . + . ID=gene-LLC55_RS22060;Name=LLC55_RS22060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22060;old_locus_tag=LLC55_22080 NZ_CP086200.1 Protein Homology CDS 4685651 4688008 . + 0 ID=cds-WP_075242196.1;Parent=gene-LLC55_RS22060;Dbxref=Genbank:WP_075242196.1;Name=WP_075242196.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167589.1;locus_tag=LLC55_RS22060;product=Tat pathway signal protein;protein_id=WP_075242196.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4688530 4691346 . + . ID=gene-LLC55_RS22065;Name=LLC55_RS22065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22065;old_locus_tag=LLC55_22085 NZ_CP086200.1 Protein Homology CDS 4688530 4691346 . + 0 ID=cds-WP_041182199.1;Parent=gene-LLC55_RS22065;Dbxref=Genbank:WP_041182199.1;Name=WP_041182199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051657.1;locus_tag=LLC55_RS22065;product=TonB-dependent receptor;protein_id=WP_041182199.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4691585 4695949 . + . ID=gene-LLC55_RS22070;Name=LLC55_RS22070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22070;old_locus_tag=LLC55_22090 NZ_CP086200.1 Protein Homology CDS 4691585 4695949 . + 0 ID=cds-WP_044756677.1;Parent=gene-LLC55_RS22070;Dbxref=Genbank:WP_044756677.1;Name=WP_044756677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154735.1;locus_tag=LLC55_RS22070;product=Ig-like domain-containing protein;protein_id=WP_044756677.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4695946 4697532 . + . ID=gene-LLC55_RS22075;Name=LLC55_RS22075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22075;old_locus_tag=LLC55_22095 NZ_CP086200.1 Protein Homology CDS 4695946 4697532 . + 0 ID=cds-WP_033013184.1;Parent=gene-LLC55_RS22075;Dbxref=Genbank:WP_033013184.1;Name=WP_033013184.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920354.1;locus_tag=LLC55_RS22075;product=family 43 glycosylhydrolase;protein_id=WP_033013184.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4697854 4700199 . + . ID=gene-LLC55_RS22080;Name=LLC55_RS22080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22080;old_locus_tag=LLC55_22100 NZ_CP086200.1 Protein Homology CDS 4697854 4700199 . + 0 ID=cds-WP_011409000.1;Parent=gene-LLC55_RS22080;Dbxref=Genbank:WP_011409000.1;Name=WP_011409000.1;Ontology_term=GO:0006508;gbkey=CDS;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259647.1;locus_tag=LLC55_RS22080;product=S9 family peptidase;protein_id=WP_011409000.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4700696 4701672 . + . ID=gene-LLC55_RS22085;Name=LLC55_RS22085;end_range=4701672,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22085;old_locus_tag=LLC55_22105;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4700696 4701672 . + 0 ID=cds-LLC55_RS22085;Parent=gene-LLC55_RS22085;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4701672,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850071.1;locus_tag=LLC55_RS22085;partial=true;product=TonB-dependent receptor plug domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4701633 4702817 . - . ID=gene-LLC55_RS22090;Name=LLC55_RS22090;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22090;old_locus_tag=LLC55_22110;pseudo=true NZ_CP086200.1 Protein Homology CDS 4701633 4702817 . - 0 ID=cds-LLC55_RS22090;Parent=gene-LLC55_RS22090;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557964.1;locus_tag=LLC55_RS22090;product=IS256-like element IS1113 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4702902 4704880 . + . ID=gene-LLC55_RS22095;Name=LLC55_RS22095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22095;old_locus_tag=LLC55_22115;partial=true;pseudo=true;start_range=.,4702902 NZ_CP086200.1 Protein Homology CDS 4702902 4704880 . + 0 ID=cds-LLC55_RS22095;Parent=gene-LLC55_RS22095;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850071.1;locus_tag=LLC55_RS22095;partial=true;product=TonB-dependent receptor;pseudo=true;start_range=.,4702902;transl_table=11 NZ_CP086200.1 RefSeq gene 4705028 4707403 . + . ID=gene-LLC55_RS22100;Name=LLC55_RS22100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22100;old_locus_tag=LLC55_22120 NZ_CP086200.1 Protein Homology CDS 4705028 4707403 . + 0 ID=cds-WP_011408994.1;Parent=gene-LLC55_RS22100;Dbxref=Genbank:WP_011408994.1;Name=WP_011408994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302217.1;locus_tag=LLC55_RS22100;product=glycoside hydrolase family 127 protein;protein_id=WP_011408994.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4707518 4708051 . - . ID=gene-LLC55_RS22105;Name=LLC55_RS22105;end_range=4708051,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22105;old_locus_tag=LLC55_22125;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4707518 4708051 . - 0 ID=cds-LLC55_RS22105;Parent=gene-LLC55_RS22105;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=4708051,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086557936.1;locus_tag=LLC55_RS22105;partial=true;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4708079 4709113 . - . ID=gene-LLC55_RS22110;Name=LLC55_RS22110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22110;old_locus_tag=LLC55_22130 NZ_CP086200.1 Protein Homology CDS 4708079 4709113 . - 0 ID=cds-WP_011407587.1-4;Parent=gene-LLC55_RS22110;Dbxref=Genbank:WP_011407587.1;Name=WP_011407587.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611268.1;locus_tag=LLC55_RS22110;product=IS630 family transposase;protein_id=WP_011407587.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4709169 4709432 . - . ID=gene-LLC55_RS22115;Name=LLC55_RS22115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22115;old_locus_tag=LLC55_22135;partial=true;pseudo=true;start_range=.,4709169 NZ_CP086200.1 Protein Homology CDS 4709169 4709432 . - 0 ID=cds-LLC55_RS22115;Parent=gene-LLC55_RS22115;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS22115;partial=true;product=transposase;pseudo=true;start_range=.,4709169;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4709506 4709928 . + . ID=gene-LLC55_RS22120;Name=LLC55_RS22120;end_range=4709928,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22120;old_locus_tag=LLC55_22140;partial=true;pseudo=true;start_range=.,4709506 NZ_CP086200.1 Protein Homology CDS 4709506 4709928 . + 0 ID=cds-LLC55_RS22120;Parent=gene-LLC55_RS22120;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=4709928,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257700.1;locus_tag=LLC55_RS22120;partial=true;product=transposase;pseudo=true;start_range=.,4709506;transl_table=11 NZ_CP086200.1 RefSeq gene 4709951 4711186 . - . ID=gene-LLC55_RS22125;Name=LLC55_RS22125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22125;old_locus_tag=LLC55_22145 NZ_CP086200.1 Protein Homology CDS 4709951 4711186 . - 0 ID=cds-WP_011408991.1;Parent=gene-LLC55_RS22125;Dbxref=Genbank:WP_011408991.1;Name=WP_011408991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS22125;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011408991.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4711463 4711579 . - . ID=gene-LLC55_RS22130;Name=LLC55_RS22130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22130;old_locus_tag=LLC55_22150;partial=true;pseudo=true;start_range=.,4711463 NZ_CP086200.1 Protein Homology CDS 4711463 4711579 . - 0 ID=cds-LLC55_RS22130;Parent=gene-LLC55_RS22130;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380753.1;locus_tag=LLC55_RS22130;partial=true;product=DUF1264 domain-containing protein;pseudo=true;start_range=.,4711463;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4711592 4712557 . - . ID=gene-LLC55_RS22135;Name=LLC55_RS22135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22135;old_locus_tag=LLC55_22155;pseudo=true NZ_CP086200.1 Protein Homology CDS 4711592 4712557 . - 0 ID=cds-LLC55_RS22135;Parent=gene-LLC55_RS22135;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS22135;product=IS1595-like element ISXo5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4712793 4713176 . + . ID=gene-LLC55_RS22140;Name=LLC55_RS22140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22140;old_locus_tag=LLC55_22160;partial=true;pseudo=true;start_range=.,4712793 NZ_CP086200.1 Protein Homology CDS 4712793 4713176 . + 0 ID=cds-LLC55_RS22140;Parent=gene-LLC55_RS22140;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970070.1;locus_tag=LLC55_RS22140;partial=true;product=exodeoxyribonuclease III;pseudo=true;start_range=.,4712793;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4713220 4713492 . - . ID=gene-LLC55_RS22145;Name=LLC55_RS22145;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22145;old_locus_tag=LLC55_22165;partial=true;pseudo=true;start_range=.,4713220 NZ_CP086200.1 Protein Homology CDS 4713220 4713492 . - 0 ID=cds-LLC55_RS22145;Parent=gene-LLC55_RS22145;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158292.1;locus_tag=LLC55_RS22145;partial=true;product=hypothetical protein;pseudo=true;start_range=.,4713220;transl_table=11 NZ_CP086200.1 RefSeq gene 4713677 4714951 . + . ID=gene-LLC55_RS22150;Name=LLC55_RS22150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22150;old_locus_tag=LLC55_22170 NZ_CP086200.1 Protein Homology CDS 4713677 4714951 . + 0 ID=cds-WP_173340398.1;Parent=gene-LLC55_RS22150;Dbxref=Genbank:WP_173340398.1;Name=WP_173340398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160124.1;locus_tag=LLC55_RS22150;product=molybdopterin molybdotransferase MoeA;protein_id=WP_173340398.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4714989 4715558 . + . ID=gene-LLC55_RS22155;Name=LLC55_RS22155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22155;old_locus_tag=LLC55_22175 NZ_CP086200.1 Protein Homology CDS 4714989 4715558 . + 0 ID=cds-WP_011408988.1;Parent=gene-LLC55_RS22155;Dbxref=Genbank:WP_011408988.1;Name=WP_011408988.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575382.1;locus_tag=LLC55_RS22155;product=molybdenum cofactor guanylyltransferase;protein_id=WP_011408988.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4715542 4715904 . + . ID=gene-LLC55_RS22160;Name=LLC55_RS22160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22160;old_locus_tag=LLC55_22180 NZ_CP086200.1 Protein Homology CDS 4715542 4715904 . + 0 ID=cds-WP_011408987.1;Parent=gene-LLC55_RS22160;Dbxref=Genbank:WP_011408987.1;Name=WP_011408987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158289.1;locus_tag=LLC55_RS22160;product=hypothetical protein;protein_id=WP_011408987.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4716138 4717210 . + . ID=gene-LLC55_RS23500;Name=LLC55_RS23500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23500;old_locus_tag=LLC55_22185;pseudo=true NZ_CP086200.1 Protein Homology CDS 4716138 4717210 . + 0 ID=cds-LLC55_RS23500;Parent=gene-LLC55_RS23500;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158288.1;locus_tag=LLC55_RS23500;product=AraC family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4717298 4717516 . - . ID=gene-LLC55_RS22170;Name=LLC55_RS22170;end_range=4717516,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22170;old_locus_tag=LLC55_22190;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4717298 4717516 . - 0 ID=cds-LLC55_RS22170;Parent=gene-LLC55_RS22170;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4717516,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575387.1;locus_tag=LLC55_RS22170;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4717492 4717962 . - . ID=gene-LLC55_RS22175;Name=LLC55_RS22175;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22175;old_locus_tag=LLC55_22195;partial=true;pseudo=true;start_range=.,4717492 NZ_CP086200.1 Protein Homology CDS 4717492 4717962 . - 0 ID=cds-LLC55_RS22175;Parent=gene-LLC55_RS22175;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160123.1;locus_tag=LLC55_RS22175;partial=true;product=NAD(P)/FAD-dependent oxidoreductase;pseudo=true;start_range=.,4717492;transl_table=11 NZ_CP086200.1 RefSeq gene 4718301 4719278 . - . ID=gene-LLC55_RS22180;Name=LLC55_RS22180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22180;old_locus_tag=LLC55_22200 NZ_CP086200.1 Protein Homology CDS 4718301 4719278 . - 0 ID=cds-WP_011408985.1;Parent=gene-LLC55_RS22180;Dbxref=Genbank:WP_011408985.1;Name=WP_011408985.1;Ontology_term=GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503383.1;locus_tag=LLC55_RS22180;product=SAM-dependent methyltransferase;protein_id=WP_011408985.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4719363 4719920 . + . ID=gene-LLC55_RS22185;Name=LLC55_RS22185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22185;old_locus_tag=LLC55_22205;pseudo=true NZ_CP086200.1 Protein Homology CDS 4719363 4719920 . + 0 ID=cds-LLC55_RS22185;Parent=gene-LLC55_RS22185;Note=frameshifted;Ontology_term=GO:0003723;gbkey=CDS;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575394.1;locus_tag=LLC55_RS22185;product=ANTAR domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4720006 4720397 . + . ID=gene-LLC55_RS22190;Name=LLC55_RS22190;end_range=4720397,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22190;old_locus_tag=LLC55_22210;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4720006 4720397 . + 0 ID=cds-LLC55_RS22190;Parent=gene-LLC55_RS22190;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4720397,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009596539.1;locus_tag=LLC55_RS22190;partial=true;product=ABC transporter substrate-binding protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4720486 4721451 . + . ID=gene-LLC55_RS22195;Name=LLC55_RS22195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22195;old_locus_tag=LLC55_22215 NZ_CP086200.1 Protein Homology CDS 4720486 4721451 . + 0 ID=cds-WP_109182067.1-3;Parent=gene-LLC55_RS22195;Dbxref=Genbank:WP_109182067.1;Name=WP_109182067.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_102607467.1;locus_tag=LLC55_RS22195;product=IS1595-like element ISXo5 family transposase;protein_id=WP_109182067.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4721732 4722172 . + . ID=gene-LLC55_RS22200;Name=LLC55_RS22200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22200;old_locus_tag=LLC55_22220;partial=true;pseudo=true;start_range=.,4721732 NZ_CP086200.1 Protein Homology CDS 4721732 4722172 . + 0 ID=cds-LLC55_RS22200;Parent=gene-LLC55_RS22200;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169078.1;locus_tag=LLC55_RS22200;partial=true;product=nitrate ABC transporter substrate-binding protein;pseudo=true;start_range=.,4721732;transl_table=11 NZ_CP086200.1 RefSeq gene 4722435 4723397 . - . ID=gene-LLC55_RS22205;Name=LLC55_RS22205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22205;old_locus_tag=LLC55_22225 NZ_CP086200.1 Protein Homology CDS 4722435 4723397 . - 0 ID=cds-WP_011408981.1;Parent=gene-LLC55_RS22205;Dbxref=Genbank:WP_011408981.1;Name=WP_011408981.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182294.1;locus_tag=LLC55_RS22205;product=IS1595-like element ISXo2 family transposase;protein_id=WP_011408981.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4723547 4724866 . - . ID=gene-LLC55_RS22210;Name=LLC55_RS22210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22210;old_locus_tag=LLC55_22230 NZ_CP086200.1 Protein Homology CDS 4723547 4724866 . - 0 ID=cds-WP_115840162.1;Parent=gene-LLC55_RS22210;Dbxref=Genbank:WP_115840162.1;Name=WP_115840162.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS22210;product=IS701-like element ISXo15 family transposase;protein_id=WP_115840162.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4725003 4725971 . + . ID=gene-LLC55_RS22215;Name=LLC55_RS22215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22215;old_locus_tag=LLC55_22235 NZ_CP086200.1 Protein Homology CDS 4725003 4725971 . + 0 ID=cds-WP_011258802.1-15;Parent=gene-LLC55_RS22215;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS22215;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4726287 4727270 . - . ID=gene-LLC55_RS22220;Name=LLC55_RS22220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22220;old_locus_tag=LLC55_22240 NZ_CP086200.1 Protein Homology CDS 4726287 4727270 . - 0 ID=cds-WP_011408980.1;Parent=gene-LLC55_RS22220;Dbxref=Genbank:WP_011408980.1;Name=WP_011408980.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_022557821.1;locus_tag=LLC55_RS22220;product=IS5 family transposase;protein_id=WP_011408980.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4727710 4727967 . + . ID=gene-LLC55_RS22225;Name=LLC55_RS22225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22225;old_locus_tag=LLC55_22245 NZ_CP086200.1 Protein Homology CDS 4727710 4727967 . + 0 ID=cds-WP_011408979.1;Parent=gene-LLC55_RS22225;Dbxref=Genbank:WP_011408979.1;Name=WP_011408979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812907.1;locus_tag=LLC55_RS22225;product=stress-induced protein;protein_id=WP_011408979.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4728207 4729202 . - . ID=gene-LLC55_RS22230;Name=LLC55_RS22230;end_range=4729202,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22230;old_locus_tag=LLC55_22250;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4728207 4729202 . - 0 ID=cds-LLC55_RS22230;Parent=gene-LLC55_RS22230;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4729202,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS22230;partial=true;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4729267 4730502 . + . ID=gene-LLC55_RS22235;Name=LLC55_RS22235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22235;old_locus_tag=LLC55_22255 NZ_CP086200.1 Protein Homology CDS 4729267 4730502 . + 0 ID=cds-WP_011259629.1;Parent=gene-LLC55_RS22235;Dbxref=Genbank:WP_011259629.1;Name=WP_011259629.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS22235;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_011259629.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4730512 4730847 . - . ID=gene-LLC55_RS22240;Name=LLC55_RS22240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22240;old_locus_tag=LLC55_22260;partial=true;pseudo=true;start_range=.,4730512 NZ_CP086200.1 Protein Homology CDS 4730512 4730847 . - 0 ID=cds-LLC55_RS22240;Parent=gene-LLC55_RS22240;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS22240;partial=true;product=transposase;pseudo=true;start_range=.,4730512;transl_table=11 NZ_CP086200.1 RefSeq gene 4731259 4731912 . - . ID=gene-LLC55_RS22245;Name=LLC55_RS22245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22245;old_locus_tag=LLC55_22265 NZ_CP086200.1 Protein Homology CDS 4731259 4731912 . - 0 ID=cds-WP_027703968.1;Parent=gene-LLC55_RS22245;Dbxref=Genbank:WP_027703968.1;Name=WP_027703968.1;Ontology_term=GO:0000287,GO:0008897;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408977.1;locus_tag=LLC55_RS22245;product=4'-phosphopantetheinyl transferase superfamily protein;protein_id=WP_027703968.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4732174 4732257 . - . ID=gene-LLC55_RS22250;Name=LLC55_RS22250;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS22250;old_locus_tag=LLC55_22270 NZ_CP086200.1 tRNAscan-SE tRNA 4732174 4732257 . - . ID=rna-LLC55_RS22250;Parent=gene-LLC55_RS22250;anticodon=(pos:complement(4732221..4732223));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS22250;product=tRNA-Leu NZ_CP086200.1 tRNAscan-SE exon 4732174 4732257 . - . ID=exon-LLC55_RS22250-1;Parent=rna-LLC55_RS22250;anticodon=(pos:complement(4732221..4732223));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS22250;product=tRNA-Leu NZ_CP086200.1 RefSeq gene 4732399 4733691 . + . ID=gene-LLC55_RS22255;Name=LLC55_RS22255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22255;old_locus_tag=LLC55_22275 NZ_CP086200.1 Protein Homology CDS 4732399 4733691 . + 0 ID=cds-WP_011408976.1;Parent=gene-LLC55_RS22255;Dbxref=Genbank:WP_011408976.1;Name=WP_011408976.1;Ontology_term=GO:0000271,GO:0003979,GO:0016616,GO:0051287;gbkey=CDS;go_function=UDP-glucose 6-dehydrogenase activity|0003979||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503478.1;locus_tag=LLC55_RS22255;product=nucleotide sugar dehydrogenase;protein_id=WP_011408976.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4733675 4734937 . - . ID=gene-LLC55_RS22260;Name=LLC55_RS22260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22260;old_locus_tag=LLC55_22280 NZ_CP086200.1 Protein Homology CDS 4733675 4734937 . - 0 ID=cds-WP_011259625.1;Parent=gene-LLC55_RS22260;Dbxref=Genbank:WP_011259625.1;Name=WP_011259625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378776.1;locus_tag=LLC55_RS22260;product=TIGR03862 family flavoprotein;protein_id=WP_011259625.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4734949 4735380 . - . ID=gene-LLC55_RS22265;Name=LLC55_RS22265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22265;old_locus_tag=LLC55_22285 NZ_CP086200.1 Protein Homology CDS 4734949 4735380 . - 0 ID=cds-WP_011408975.1;Parent=gene-LLC55_RS22265;Dbxref=Genbank:WP_011408975.1;Name=WP_011408975.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156625.1;locus_tag=LLC55_RS22265;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_011408975.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4735439 4735804 . + . ID=gene-LLC55_RS22270;Name=LLC55_RS22270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22270;old_locus_tag=LLC55_22290 NZ_CP086200.1 Protein Homology CDS 4735439 4735804 . + 0 ID=cds-WP_011408974.1;Parent=gene-LLC55_RS22270;Dbxref=Genbank:WP_011408974.1;Name=WP_011408974.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301518.1;locus_tag=LLC55_RS22270;product=DUF6164 family protein;protein_id=WP_011408974.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4735938 4736906 . + . ID=gene-LLC55_RS22275;Name=LLC55_RS22275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22275;old_locus_tag=LLC55_22295 NZ_CP086200.1 Protein Homology CDS 4735938 4736906 . + 0 ID=cds-WP_011257031.1-8;Parent=gene-LLC55_RS22275;Dbxref=Genbank:WP_011257031.1;Name=WP_011257031.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS22275;product=IS5-like element ISXo1 family transposase;protein_id=WP_011257031.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4737064 4737825 . + . ID=gene-LLC55_RS22280;Name=LLC55_RS22280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22280;old_locus_tag=LLC55_22300 NZ_CP086200.1 Protein Homology CDS 4737064 4737825 . + 0 ID=cds-WP_011408973.1;Parent=gene-LLC55_RS22280;Dbxref=Genbank:WP_011408973.1;Name=WP_011408973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373348.1;locus_tag=LLC55_RS22280;product=sulfurtransferase;protein_id=WP_011408973.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4738047 4738694 . + . ID=gene-LLC55_RS22285;Name=LLC55_RS22285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22285;old_locus_tag=LLC55_22305 NZ_CP086200.1 Protein Homology CDS 4738047 4738694 . + 0 ID=cds-WP_012445389.1;Parent=gene-LLC55_RS22285;Dbxref=Genbank:WP_012445389.1;Name=WP_012445389.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408972.1;locus_tag=LLC55_RS22285;product=response regulator;protein_id=WP_012445389.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4738798 4739561 . + . ID=gene-LLC55_RS22290;Name=LLC55_RS22290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22290;old_locus_tag=LLC55_22310 NZ_CP086200.1 Protein Homology CDS 4738798 4739113 . + 0 ID=cds-WP_094187765.1;Parent=gene-LLC55_RS22290;Dbxref=Genbank:WP_094187765.1;Name=WP_094187765.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS22290;product=IS5 family transposase;protein_id=WP_094187765.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4739113 4739561 . + 2 ID=cds-WP_094187765.1;Parent=gene-LLC55_RS22290;Dbxref=Genbank:WP_094187765.1;Name=WP_094187765.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS22290;product=IS5 family transposase;protein_id=WP_094187765.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4740087 4743803 . - . ID=gene-LLC55_RS22295;Name=rne;gbkey=Gene;gene=rne;gene_biotype=protein_coding;locus_tag=LLC55_RS22295;old_locus_tag=LLC55_22315 NZ_CP086200.1 Protein Homology CDS 4740087 4743803 . - 0 ID=cds-WP_012445388.1;Parent=gene-LLC55_RS22295;Dbxref=Genbank:WP_012445388.1;Name=WP_012445388.1;Ontology_term=GO:0006396,GO:0003723,GO:0008995;gbkey=CDS;gene=rne;go_function=RNA binding|0003723||IEA,ribonuclease E activity|0008995||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408969.1;locus_tag=LLC55_RS22295;product=ribonuclease E;protein_id=WP_012445388.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4744205 4745191 . + . ID=gene-LLC55_RS22300;Name=LLC55_RS22300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22300;old_locus_tag=LLC55_22320 NZ_CP086200.1 Protein Homology CDS 4744205 4745191 . + 0 ID=cds-WP_027704269.1;Parent=gene-LLC55_RS22300;Dbxref=Genbank:WP_027704269.1;Name=WP_027704269.1;Ontology_term=GO:0001522,GO:0009451,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303869.1;locus_tag=LLC55_RS22300;product=RluA family pseudouridine synthase;protein_id=WP_027704269.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4745224 4747041 . - . ID=gene-LLC55_RS22305;Name=LLC55_RS22305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22305;old_locus_tag=LLC55_22325 NZ_CP086200.1 Protein Homology CDS 4745224 4747041 . - 0 ID=cds-WP_171970841.1;Parent=gene-LLC55_RS22305;Dbxref=Genbank:WP_171970841.1;Name=WP_171970841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259618.1;locus_tag=LLC55_RS22305;product=DUF3300 domain-containing protein;protein_id=WP_171970841.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4747357 4747835 . - . ID=gene-LLC55_RS22310;Name=LLC55_RS22310;end_range=4747835,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22310;old_locus_tag=LLC55_22330;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4747357 4747835 . - 0 ID=cds-LLC55_RS22310;Parent=gene-LLC55_RS22310;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0055085,GO:0016020;end_range=4747835,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575667.1;locus_tag=LLC55_RS22310;partial=true;product=ZIP family metal transporter;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4747893 4748315 . - . ID=gene-LLC55_RS22315;Name=LLC55_RS22315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22315;old_locus_tag=LLC55_22335 NZ_CP086200.1 Protein Homology CDS 4747893 4748315 . - 0 ID=cds-WP_012445383.1;Parent=gene-LLC55_RS22315;Dbxref=Genbank:WP_012445383.1;Name=WP_012445383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259617.1;locus_tag=LLC55_RS22315;product=energy transducer TonB;protein_id=WP_012445383.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4748312 4748668 . - . ID=gene-LLC55_RS22320;Name=LLC55_RS22320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22320;old_locus_tag=LLC55_22340 NZ_CP086200.1 Protein Homology CDS 4748312 4748668 . - 0 ID=cds-WP_012445382.1;Parent=gene-LLC55_RS22320;Dbxref=Genbank:WP_012445382.1;Name=WP_012445382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445382.1;locus_tag=LLC55_RS22320;product=4a-hydroxytetrahydrobiopterin dehydratase;protein_id=WP_012445382.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4748756 4749355 . + . ID=gene-LLC55_RS22325;Name=LLC55_RS22325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22325;old_locus_tag=LLC55_22345 NZ_CP086200.1 Protein Homology CDS 4748756 4749355 . + 0 ID=cds-WP_012445381.1;Parent=gene-LLC55_RS22325;Dbxref=Genbank:WP_012445381.1;Name=WP_012445381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410314.1;locus_tag=LLC55_RS22325;product=NfuA family Fe-S biogenesis protein;protein_id=WP_012445381.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4749369 4751192 . + . ID=gene-LLC55_RS22330;Name=LLC55_RS22330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22330;old_locus_tag=LLC55_22350 NZ_CP086200.1 Protein Homology CDS 4749369 4751192 . + 0 ID=cds-WP_075242287.1;Parent=gene-LLC55_RS22330;Dbxref=Genbank:WP_075242287.1;Name=WP_075242287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445380.1;locus_tag=LLC55_RS22330;product=transmembrane repetitive protein;protein_id=WP_075242287.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4751358 4751612 . + . ID=gene-LLC55_RS22335;Name=LLC55_RS22335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22335;old_locus_tag=LLC55_22355;partial=true;pseudo=true;start_range=.,4751358 NZ_CP086200.1 Protein Homology CDS 4751358 4751612 . + 0 ID=cds-LLC55_RS22335;Parent=gene-LLC55_RS22335;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504811.1;locus_tag=LLC55_RS22335;partial=true;product=transposase;pseudo=true;start_range=.,4751358;transl_table=11 NZ_CP086200.1 RefSeq gene 4751674 4751853 . + . ID=gene-LLC55_RS22340;Name=LLC55_RS22340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22340;old_locus_tag=LLC55_22360 NZ_CP086200.1 GeneMarkS-2+ CDS 4751674 4751853 . + 0 ID=cds-WP_075240368.1;Parent=gene-LLC55_RS22340;Dbxref=Genbank:WP_075240368.1;Name=WP_075240368.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS22340;product=hypothetical protein;protein_id=WP_075240368.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4751850 4754684 . + . ID=gene-LLC55_RS22345;Name=LLC55_RS22345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22345;old_locus_tag=LLC55_22365 NZ_CP086200.1 Protein Homology CDS 4751850 4754684 . + 0 ID=cds-WP_042465052.1;Parent=gene-LLC55_RS22345;Dbxref=Genbank:WP_042465052.1;Name=WP_042465052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445373.1;locus_tag=LLC55_RS22345;product=hypothetical protein;protein_id=WP_042465052.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4754713 4755459 . + . ID=gene-LLC55_RS22350;Name=LLC55_RS22350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22350;old_locus_tag=LLC55_22370 NZ_CP086200.1 Protein Homology CDS 4754713 4755459 . + 0 ID=cds-WP_042465640.1;Parent=gene-LLC55_RS22350;Dbxref=Genbank:WP_042465640.1;Name=WP_042465640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807738.1;locus_tag=LLC55_RS22350;product=hypothetical protein;protein_id=WP_042465640.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4755534 4757771 . + . ID=gene-LLC55_RS22355;Name=LLC55_RS22355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22355;old_locus_tag=LLC55_22375 NZ_CP086200.1 Protein Homology CDS 4755534 4757771 . + 0 ID=cds-WP_228329667.1;Parent=gene-LLC55_RS22355;Dbxref=Genbank:WP_228329667.1;Name=WP_228329667.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408803.1;locus_tag=LLC55_RS22355;product=hypothetical protein;protein_id=WP_228329667.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4757762 4758718 . - . ID=gene-LLC55_RS22360;Name=LLC55_RS22360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22360;old_locus_tag=LLC55_22380 NZ_CP086200.1 Protein Homology CDS 4757762 4758718 . - 0 ID=cds-WP_228329660.1-2;Parent=gene-LLC55_RS22360;Dbxref=Genbank:WP_228329660.1;Name=WP_228329660.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182719.1;locus_tag=LLC55_RS22360;product=IS30-like element IS1112b family transposase;protein_id=WP_228329660.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4758908 4759645 . + . ID=gene-LLC55_RS22365;Name=LLC55_RS22365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22365;old_locus_tag=LLC55_22385 NZ_CP086200.1 Protein Homology CDS 4758908 4759645 . + 0 ID=cds-WP_011259611.1;Parent=gene-LLC55_RS22365;Dbxref=Genbank:WP_011259611.1;Name=WP_011259611.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259611.1;locus_tag=LLC55_RS22365;product=hypothetical protein;protein_id=WP_011259611.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4759670 4761586 . + . ID=gene-LLC55_RS22370;Name=LLC55_RS22370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22370;old_locus_tag=LLC55_22390 NZ_CP086200.1 Protein Homology CDS 4759670 4761586 . + 0 ID=cds-WP_011408960.1;Parent=gene-LLC55_RS22370;Dbxref=Genbank:WP_011408960.1;Name=WP_011408960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444485.1;locus_tag=LLC55_RS22370;product=hypothetical protein;protein_id=WP_011408960.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4761638 4762606 . + . ID=gene-LLC55_RS22375;Name=LLC55_RS22375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22375;old_locus_tag=LLC55_22395 NZ_CP086200.1 Protein Homology CDS 4761638 4762606 . + 0 ID=cds-WP_011258802.1-16;Parent=gene-LLC55_RS22375;Dbxref=Genbank:WP_011258802.1;Name=WP_011258802.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS22375;product=IS5-like element ISXo1 family transposase;protein_id=WP_011258802.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4762792 4764027 . - . ID=gene-LLC55_RS22380;Name=LLC55_RS22380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22380;old_locus_tag=LLC55_22400 NZ_CP086200.1 Protein Homology CDS 4762792 4764027 . - 0 ID=cds-WP_228329668.1;Parent=gene-LLC55_RS22380;Dbxref=Genbank:WP_228329668.1;Name=WP_228329668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408623.1;locus_tag=LLC55_RS22380;product=ISL3-like element ISXoo13 family transposase;protein_id=WP_228329668.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4764198 4765516 . - . ID=gene-LLC55_RS22385;Name=LLC55_RS22385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22385;old_locus_tag=LLC55_22405;pseudo=true NZ_CP086200.1 Protein Homology CDS 4764198 4765516 . - 0 ID=cds-LLC55_RS22385;Parent=gene-LLC55_RS22385;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612280.1;locus_tag=LLC55_RS22385;product=IS701-like element ISXo15 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4765652 4766620 . + . ID=gene-LLC55_RS22390;Name=LLC55_RS22390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22390;old_locus_tag=LLC55_22410 NZ_CP086200.1 Protein Homology CDS 4765652 4766620 . + 0 ID=cds-WP_011257031.1-9;Parent=gene-LLC55_RS22390;Dbxref=Genbank:WP_011257031.1;Name=WP_011257031.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258802.1;locus_tag=LLC55_RS22390;product=IS5-like element ISXo1 family transposase;protein_id=WP_011257031.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4767342 4767485 . + . ID=gene-LLC55_RS22395;Name=LLC55_RS22395;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22395;old_locus_tag=LLC55_22415;partial=true;pseudo=true;start_range=.,4767342 NZ_CP086200.1 Protein Homology CDS 4767342 4767485 . + 0 ID=cds-LLC55_RS22395;Parent=gene-LLC55_RS22395;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611206.1;locus_tag=LLC55_RS22395;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,4767342;transl_table=11 NZ_CP086200.1 RefSeq gene 4767979 4768485 . + . ID=gene-LLC55_RS22400;Name=tssB;gbkey=Gene;gene=tssB;gene_biotype=protein_coding;locus_tag=LLC55_RS22400;old_locus_tag=LLC55_22420 NZ_CP086200.1 Protein Homology CDS 4767979 4768485 . + 0 ID=cds-WP_024711387.1;Parent=gene-LLC55_RS22400;Dbxref=Genbank:WP_024711387.1;Name=WP_024711387.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssB;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003467682.1;locus_tag=LLC55_RS22400;product=type VI secretion system contractile sheath small subunit;protein_id=WP_024711387.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4768478 4769992 . + . ID=gene-LLC55_RS22405;Name=tssC;gbkey=Gene;gene=tssC;gene_biotype=protein_coding;locus_tag=LLC55_RS22405;old_locus_tag=LLC55_22425 NZ_CP086200.1 Protein Homology CDS 4768478 4769992 . + 0 ID=cds-WP_027703472.1;Parent=gene-LLC55_RS22405;Dbxref=Genbank:WP_027703472.1;Name=WP_027703472.1;Ontology_term=GO:0033103,GO:0003674,GO:0033104;gbkey=CDS;gene=tssC;go_component=type VI protein secretion system complex|0033104||IEA;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300089.1;locus_tag=LLC55_RS22405;product=type VI secretion system contractile sheath large subunit;protein_id=WP_027703472.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4770092 4770595 . + . ID=gene-LLC55_RS22410;Name=LLC55_RS22410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22410;old_locus_tag=LLC55_22430 NZ_CP086200.1 Protein Homology CDS 4770092 4770595 . + 0 ID=cds-WP_011259605.1;Parent=gene-LLC55_RS22410;Dbxref=Genbank:WP_011259605.1;Name=WP_011259605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572542.1;locus_tag=LLC55_RS22410;product=type VI secretion system tube protein Hcp;protein_id=WP_011259605.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4770631 4771464 . + . ID=gene-LLC55_RS22415;Name=LLC55_RS22415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22415;old_locus_tag=LLC55_22435 NZ_CP086200.1 Protein Homology CDS 4770631 4771464 . + 0 ID=cds-WP_011259604.1;Parent=gene-LLC55_RS22415;Dbxref=Genbank:WP_011259604.1;Name=WP_011259604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373429.1;locus_tag=LLC55_RS22415;product=type VI secretion system accessory protein TagJ;protein_id=WP_011259604.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4771452 4771955 . + . ID=gene-LLC55_RS22420;Name=tssE;gbkey=Gene;gene=tssE;gene_biotype=protein_coding;locus_tag=LLC55_RS22420;old_locus_tag=LLC55_22440 NZ_CP086200.1 Protein Homology CDS 4771452 4771955 . + 0 ID=cds-WP_011259603.1;Parent=gene-LLC55_RS22420;Dbxref=Genbank:WP_011259603.1;Name=WP_011259603.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssE;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300091.1;locus_tag=LLC55_RS22420;product=type VI secretion system baseplate subunit TssE;protein_id=WP_011259603.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4771959 4773836 . + . ID=gene-LLC55_RS22425;Name=tssF;gbkey=Gene;gene=tssF;gene_biotype=protein_coding;locus_tag=LLC55_RS22425;old_locus_tag=LLC55_22445 NZ_CP086200.1 Protein Homology CDS 4771959 4773836 . + 0 ID=cds-WP_011259602.1;Parent=gene-LLC55_RS22425;Dbxref=Genbank:WP_011259602.1;Name=WP_011259602.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssF;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571950.1;locus_tag=LLC55_RS22425;product=type VI secretion system baseplate subunit TssF;protein_id=WP_011259602.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4773800 4774810 . + . ID=gene-LLC55_RS22430;Name=tssG;gbkey=Gene;gene=tssG;gene_biotype=protein_coding;locus_tag=LLC55_RS22430;old_locus_tag=LLC55_22450 NZ_CP086200.1 Protein Homology CDS 4773800 4774810 . + 0 ID=cds-WP_011408954.1;Parent=gene-LLC55_RS22430;Dbxref=Genbank:WP_011408954.1;Name=WP_011408954.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssG;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113157.1;locus_tag=LLC55_RS22430;product=type VI secretion system baseplate subunit TssG;protein_id=WP_011408954.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4774843 4777548 . + . ID=gene-LLC55_RS22435;Name=tssH;gbkey=Gene;gene=tssH;gene_biotype=protein_coding;locus_tag=LLC55_RS22435;old_locus_tag=LLC55_22455 NZ_CP086200.1 Protein Homology CDS 4774843 4777548 . + 0 ID=cds-WP_011408953.1;Parent=gene-LLC55_RS22435;Dbxref=Genbank:WP_011408953.1;Name=WP_011408953.1;Ontology_term=GO:0033103,GO:0016887,GO:0033104;gbkey=CDS;gene=tssH;go_component=type VI protein secretion system complex|0033104||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159435.1;locus_tag=LLC55_RS22435;product=type VI secretion system ATPase TssH;protein_id=WP_011408953.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4777737 4778234 . + . ID=gene-LLC55_RS22440;Name=LLC55_RS22440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22440;old_locus_tag=LLC55_22460 NZ_CP086200.1 Protein Homology CDS 4777737 4778234 . + 0 ID=cds-WP_027703476.1;Parent=gene-LLC55_RS22440;Dbxref=Genbank:WP_027703476.1;Name=WP_027703476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159434.1;locus_tag=LLC55_RS22440;product=hypothetical protein;protein_id=WP_027703476.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4778300 4778794 . + . ID=gene-LLC55_RS22445;Name=LLC55_RS22445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22445;old_locus_tag=LLC55_22465 NZ_CP086200.1 GeneMarkS-2+ CDS 4778300 4778794 . + 0 ID=cds-WP_125168760.1;Parent=gene-LLC55_RS22445;Dbxref=Genbank:WP_125168760.1;Name=WP_125168760.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS22445;product=hypothetical protein;protein_id=WP_125168760.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4778854 4779039 . + . ID=gene-LLC55_RS22450;Name=LLC55_RS22450;end_range=4779039,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22450;old_locus_tag=LLC55_22470;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4778854 4779039 . + 0 ID=cds-LLC55_RS22450;Parent=gene-LLC55_RS22450;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4779039,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_022557821.1;locus_tag=LLC55_RS22450;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4779180 4779638 . + . ID=gene-LLC55_RS22455;Name=LLC55_RS22455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22455;old_locus_tag=LLC55_22475 NZ_CP086200.1 Protein Homology CDS 4779180 4779638 . + 0 ID=cds-WP_011408952.1;Parent=gene-LLC55_RS22455;Dbxref=Genbank:WP_011408952.1;Name=WP_011408952.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118730.1;locus_tag=LLC55_RS22455;product=hypothetical protein;protein_id=WP_011408952.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4779903 4781840 . + . ID=gene-LLC55_RS22460;Name=tssI;gbkey=Gene;gene=tssI;gene_biotype=protein_coding;locus_tag=LLC55_RS22460;old_locus_tag=LLC55_22480 NZ_CP086200.1 Protein Homology CDS 4779903 4781840 . + 0 ID=cds-WP_012444497.1;Parent=gene-LLC55_RS22460;Dbxref=Genbank:WP_012444497.1;Name=WP_012444497.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssI;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378659.1;locus_tag=LLC55_RS22460;product=type VI secretion system tip protein TssI/VgrG;protein_id=WP_012444497.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4781849 4782388 . + . ID=gene-LLC55_RS22465;Name=LLC55_RS22465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22465;old_locus_tag=LLC55_22485 NZ_CP086200.1 Protein Homology CDS 4781849 4782388 . + 0 ID=cds-WP_011408951.1;Parent=gene-LLC55_RS22465;Dbxref=Genbank:WP_011408951.1;Name=WP_011408951.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373413.1;locus_tag=LLC55_RS22465;product=hypothetical protein;protein_id=WP_011408951.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4782385 4783809 . + . ID=gene-LLC55_RS22470;Name=tagH;gbkey=Gene;gene=tagH;gene_biotype=protein_coding;locus_tag=LLC55_RS22470;old_locus_tag=LLC55_22490 NZ_CP086200.1 Protein Homology CDS 4782385 4783809 . + 0 ID=cds-WP_069964828.1;Parent=gene-LLC55_RS22470;Dbxref=Genbank:WP_069964828.1;Name=WP_069964828.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tagH;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113159.1;locus_tag=LLC55_RS22470;product=type VI secretion system-associated FHA domain protein TagH;protein_id=WP_069964828.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4783806 4785143 . + . ID=gene-LLC55_RS22475;Name=tssK;gbkey=Gene;gene=tssK;gene_biotype=protein_coding;locus_tag=LLC55_RS22475;old_locus_tag=LLC55_22495 NZ_CP086200.1 Protein Homology CDS 4783806 4785143 . + 0 ID=cds-WP_044756715.1;Parent=gene-LLC55_RS22475;Dbxref=Genbank:WP_044756715.1;Name=WP_044756715.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssK;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373410.1;locus_tag=LLC55_RS22475;product=type VI secretion system baseplate subunit TssK;protein_id=WP_044756715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4785145 4786461 . + . ID=gene-LLC55_RS22480;Name=icmH;gbkey=Gene;gene=icmH;gene_biotype=protein_coding;locus_tag=LLC55_RS22480;old_locus_tag=LLC55_22500 NZ_CP086200.1 Protein Homology CDS 4785145 4786461 . + 0 ID=cds-WP_044756716.1;Parent=gene-LLC55_RS22480;Dbxref=Genbank:WP_044756716.1;Name=WP_044756716.1;gbkey=CDS;gene=icmH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373409.1;locus_tag=LLC55_RS22480;product=type IVB secretion system protein IcmH/DotU;protein_id=WP_044756716.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4786465 4789923 . + . ID=gene-LLC55_RS22485;Name=tssM;gbkey=Gene;gene=tssM;gene_biotype=protein_coding;locus_tag=LLC55_RS22485;old_locus_tag=LLC55_22505 NZ_CP086200.1 Protein Homology CDS 4786465 4789923 . + 0 ID=cds-WP_044756717.1;Parent=gene-LLC55_RS22485;Dbxref=Genbank:WP_044756717.1;Name=WP_044756717.1;Ontology_term=GO:0033103,GO:0003674;gbkey=CDS;gene=tssM;go_function=molecular_function|0003674||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113161.1;locus_tag=LLC55_RS22485;product=type VI secretion system membrane subunit TssM;protein_id=WP_044756717.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4789920 4790567 . + . ID=gene-LLC55_RS22490;Name=tagF;gbkey=Gene;gene=tagF;gene_biotype=protein_coding;locus_tag=LLC55_RS22490;old_locus_tag=LLC55_22510 NZ_CP086200.1 Protein Homology CDS 4789920 4790567 . + 0 ID=cds-WP_041182189.1;Parent=gene-LLC55_RS22490;Dbxref=Genbank:WP_041182189.1;Name=WP_041182189.1;gbkey=CDS;gene=tagF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373406.1;locus_tag=LLC55_RS22490;product=type VI secretion system-associated protein TagF;protein_id=WP_041182189.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4790564 4791286 . + . ID=gene-LLC55_RS22495;Name=LLC55_RS22495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22495;old_locus_tag=LLC55_22515 NZ_CP086200.1 Protein Homology CDS 4790564 4791286 . + 0 ID=cds-WP_011259593.1;Parent=gene-LLC55_RS22495;Dbxref=Genbank:WP_011259593.1;Name=WP_011259593.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347368.1;locus_tag=LLC55_RS22495;product=serine/threonine-protein phosphatase;protein_id=WP_011259593.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4791283 4794186 . + . ID=gene-LLC55_RS22500;Name=LLC55_RS22500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22500;old_locus_tag=LLC55_22520 NZ_CP086200.1 Protein Homology CDS 4791283 4794186 . + 0 ID=cds-WP_027703483.1;Parent=gene-LLC55_RS22500;Dbxref=Genbank:WP_027703483.1;Name=WP_027703483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259592.1;locus_tag=LLC55_RS22500;product=bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein;protein_id=WP_027703483.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4794183 4794509 . + . ID=gene-LLC55_RS22505;Name=LLC55_RS22505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22505;old_locus_tag=LLC55_22525 NZ_CP086200.1 Protein Homology CDS 4794183 4794509 . + 0 ID=cds-WP_012444504.1;Parent=gene-LLC55_RS22505;Dbxref=Genbank:WP_012444504.1;Name=WP_012444504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300105.1;locus_tag=LLC55_RS22505;product=hypothetical protein;protein_id=WP_012444504.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4794569 4795367 . - . ID=gene-LLC55_RS22510;Name=LLC55_RS22510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22510;old_locus_tag=LLC55_22530 NZ_CP086200.1 Protein Homology CDS 4795096 4795367 . - 0 ID=cds-WP_109181978.1;Parent=gene-LLC55_RS22510;Dbxref=Genbank:WP_109181978.1;Name=WP_109181978.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS22510;product=IS5 family transposase;protein_id=WP_109181978.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4794569 4795097 . - 1 ID=cds-WP_109181978.1;Parent=gene-LLC55_RS22510;Dbxref=Genbank:WP_109181978.1;Name=WP_109181978.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS22510;product=IS5 family transposase;protein_id=WP_109181978.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4795429 4796227 . - . ID=gene-LLC55_RS22515;Name=LLC55_RS22515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22515;old_locus_tag=LLC55_22535 NZ_CP086200.1 Protein Homology CDS 4795956 4796227 . - 0 ID=cds-WP_109181977.1;Parent=gene-LLC55_RS22515;Dbxref=Genbank:WP_109181977.1;Name=WP_109181977.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS22515;product=IS5 family transposase;protein_id=WP_109181977.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4795429 4795957 . - 1 ID=cds-WP_109181977.1;Parent=gene-LLC55_RS22515;Dbxref=Genbank:WP_109181977.1;Name=WP_109181977.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS22515;product=IS5 family transposase;protein_id=WP_109181977.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4796394 4797422 . - . ID=gene-LLC55_RS22520;Name=tssA;gbkey=Gene;gene=tssA;gene_biotype=protein_coding;locus_tag=LLC55_RS22520;old_locus_tag=LLC55_22540 NZ_CP086200.1 Protein Homology CDS 4796394 4797422 . - 0 ID=cds-WP_011408942.1;Parent=gene-LLC55_RS22520;Dbxref=Genbank:WP_011408942.1;Name=WP_011408942.1;gbkey=CDS;gene=tssA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444505.1;locus_tag=LLC55_RS22520;product=type VI secretion system protein TssA;protein_id=WP_011408942.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4797431 4798411 . - . ID=gene-LLC55_RS22525;Name=LLC55_RS22525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22525;old_locus_tag=LLC55_22545 NZ_CP086200.1 Protein Homology CDS 4797431 4798411 . - 0 ID=cds-WP_011259590.1;Parent=gene-LLC55_RS22525;Dbxref=Genbank:WP_011259590.1;Name=WP_011259590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259590.1;locus_tag=LLC55_RS22525;product=LysR family transcriptional regulator;protein_id=WP_011259590.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4798525 4800984 . - . ID=gene-LLC55_RS22530;Name=LLC55_RS22530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22530;old_locus_tag=LLC55_22550 NZ_CP086200.1 Protein Homology CDS 4798525 4800984 . - 0 ID=cds-WP_011259589.1;Parent=gene-LLC55_RS22530;Dbxref=Genbank:WP_011259589.1;Name=WP_011259589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503434.1;locus_tag=LLC55_RS22530;product=two-component system VirA-like sensor kinase;protein_id=WP_011259589.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4800981 4801973 . - . ID=gene-LLC55_RS22535;Name=LLC55_RS22535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22535;old_locus_tag=LLC55_22555 NZ_CP086200.1 Protein Homology CDS 4800981 4801973 . - 0 ID=cds-WP_011259588.1;Parent=gene-LLC55_RS22535;Dbxref=Genbank:WP_011259588.1;Name=WP_011259588.1;Ontology_term=GO:0009055,GO:0020037;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373388.1;locus_tag=LLC55_RS22535;product=c-type cytochrome;protein_id=WP_011259588.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4801970 4802749 . - . ID=gene-LLC55_RS22540;Name=LLC55_RS22540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22540;old_locus_tag=LLC55_22560 NZ_CP086200.1 Protein Homology CDS 4801970 4802749 . - 0 ID=cds-WP_011259587.1;Parent=gene-LLC55_RS22540;Dbxref=Genbank:WP_011259587.1;Name=WP_011259587.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503432.1;locus_tag=LLC55_RS22540;product=response regulator;protein_id=WP_011259587.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4803071 4803667 . - . ID=gene-LLC55_RS22545;Name=LLC55_RS22545;end_range=4803667,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22545;old_locus_tag=LLC55_22565;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4803071 4803667 . - 0 ID=cds-LLC55_RS22545;Parent=gene-LLC55_RS22545;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;end_range=4803667,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347473.1;locus_tag=LLC55_RS22545;partial=true;product=Tn3 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4803647 4804542 . + . ID=gene-LLC55_RS22550;Name=LLC55_RS22550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22550;old_locus_tag=LLC55_22570;partial=true;pseudo=true;start_range=.,4803647 NZ_CP086200.1 Protein Homology CDS 4803647 4804542 . + 0 ID=cds-LLC55_RS22550;Parent=gene-LLC55_RS22550;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345585.1;locus_tag=LLC55_RS22550;partial=true;product=IS256 family transposase;pseudo=true;start_range=.,4803647;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4804558 4805295 . - . ID=gene-LLC55_RS22555;Name=LLC55_RS22555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22555;old_locus_tag=LLC55_22575;partial=true;pseudo=true;start_range=.,4804558 NZ_CP086200.1 Protein Homology CDS 4804558 4805295 . - 0 ID=cds-LLC55_RS22555;Parent=gene-LLC55_RS22555;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612183.1;locus_tag=LLC55_RS22555;partial=true;product=transposase;pseudo=true;start_range=.,4804558;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4805249 4805404 . + . ID=gene-LLC55_RS22560;Name=LLC55_RS22560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22560;old_locus_tag=LLC55_22580;partial=true;pseudo=true;start_range=.,4805249 NZ_CP086200.1 Protein Homology CDS 4805249 4805404 . + 0 ID=cds-LLC55_RS22560;Parent=gene-LLC55_RS22560;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611952.1;locus_tag=LLC55_RS22560;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,4805249;transl_table=11 NZ_CP086200.1 RefSeq gene 4805713 4808670 . - . ID=gene-LLC55_RS22565;Name=LLC55_RS22565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22565;old_locus_tag=LLC55_22585 NZ_CP086200.1 Protein Homology CDS 4805713 4808670 . - 0 ID=cds-WP_228329669.1;Parent=gene-LLC55_RS22565;Dbxref=Genbank:WP_228329669.1;Name=WP_228329669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408937.1;locus_tag=LLC55_RS22565;product=histidine kinase;protein_id=WP_228329669.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4809121 4810307 . - . ID=gene-LLC55_RS22570;Name=LLC55_RS22570;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22570;old_locus_tag=LLC55_22590;pseudo=true NZ_CP086200.1 Protein Homology CDS 4809121 4810307 . - 0 ID=cds-LLC55_RS22570;Parent=gene-LLC55_RS22570;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611322.1;locus_tag=LLC55_RS22570;product=IS5 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4810693 4812780 . - . ID=gene-LLC55_RS22575;Name=LLC55_RS22575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22575;old_locus_tag=LLC55_22595 NZ_CP086200.1 Protein Homology CDS 4810693 4812780 . - 0 ID=cds-WP_042465046.1;Parent=gene-LLC55_RS22575;Dbxref=Genbank:WP_042465046.1;Name=WP_042465046.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368375.1;locus_tag=LLC55_RS22575;product=type III secretion system effector XopAA;protein_id=WP_042465046.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4813443 4813868 . + . ID=gene-LLC55_RS22580;Name=LLC55_RS22580;end_range=4813868,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22580;old_locus_tag=LLC55_22600;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4813443 4813868 . + 0 ID=cds-LLC55_RS22580;Parent=gene-LLC55_RS22580;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4813868,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019136.2;locus_tag=LLC55_RS22580;partial=true;product=triple tyrosine motif-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4814267 4814845 . - . ID=gene-LLC55_RS22585;Name=LLC55_RS22585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22585;old_locus_tag=LLC55_22605 NZ_CP086200.1 Protein Homology CDS 4814267 4814845 . - 0 ID=cds-WP_011259581.1;Parent=gene-LLC55_RS22585;Dbxref=Genbank:WP_011259581.1;Name=WP_011259581.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259581.1;locus_tag=LLC55_RS22585;product=TetR/AcrR family transcriptional regulator;protein_id=WP_011259581.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4814970 4816082 . + . ID=gene-LLC55_RS22590;Name=LLC55_RS22590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22590;old_locus_tag=LLC55_22610 NZ_CP086200.1 Protein Homology CDS 4814970 4816082 . + 0 ID=cds-WP_011259580.1;Parent=gene-LLC55_RS22590;Dbxref=Genbank:WP_011259580.1;Name=WP_011259580.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347613.1;locus_tag=LLC55_RS22590;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_011259580.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4816139 4818691 . + . ID=gene-LLC55_RS22595;Name=LLC55_RS22595;end_range=4818691,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22595;old_locus_tag=LLC55_22615;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4816139 4818691 . + 0 ID=cds-LLC55_RS22595;Parent=gene-LLC55_RS22595;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006810,GO:0015562,GO:0016020;end_range=4818691,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003112801.1;locus_tag=LLC55_RS22595;partial=true;product=efflux RND transporter permease subunit;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4818810 4820285 . + . ID=gene-LLC55_RS22600;Name=LLC55_RS22600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22600;old_locus_tag=LLC55_22620 NZ_CP086200.1 Protein Homology CDS 4818810 4820285 . + 0 ID=cds-WP_069959918.1;Parent=gene-LLC55_RS22600;Dbxref=Genbank:WP_069959918.1;Name=WP_069959918.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445727.1;locus_tag=LLC55_RS22600;product=IS5-like element ISXoo5 family transposase;protein_id=WP_069959918.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4820302 4820868 . + . ID=gene-LLC55_RS22605;Name=LLC55_RS22605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22605;old_locus_tag=LLC55_22625;partial=true;pseudo=true;start_range=.,4820302 NZ_CP086200.1 Protein Homology CDS 4820302 4820868 . + 0 ID=cds-LLC55_RS22605;Parent=gene-LLC55_RS22605;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303959.1;locus_tag=LLC55_RS22605;partial=true;product=efflux RND transporter permease subunit;pseudo=true;start_range=.,4820302;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4821010 4821144 . - . ID=gene-LLC55_RS22610;Name=LLC55_RS22610;end_range=4821144,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22610;old_locus_tag=LLC55_22630;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4821010 4821144 . - 0 ID=cds-LLC55_RS22610;Parent=gene-LLC55_RS22610;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4821144,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156636.1;locus_tag=LLC55_RS22610;partial=true;product=TetR/AcrR family transcriptional regulator;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4821348 4825895 . - . ID=gene-LLC55_RS22615;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS22615;old_locus_tag=LLC55_22635 NZ_CP086200.1 Protein Homology CDS 4821348 4825895 . - 0 ID=cds-WP_228329670.1;Parent=gene-LLC55_RS22615;Dbxref=Genbank:WP_228329670.1;Name=WP_228329670.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408929.1;locus_tag=LLC55_RS22615;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_228329670.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4826119 4826418 . - . ID=gene-LLC55_RS22620;Name=LLC55_RS22620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22620;old_locus_tag=LLC55_22640 NZ_CP086200.1 Protein Homology CDS 4826119 4826418 . - 0 ID=cds-WP_011408408.1-3;Parent=gene-LLC55_RS22620;Dbxref=Genbank:WP_011408408.1;Name=WP_011408408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450394.1;locus_tag=LLC55_RS22620;product=hypothetical protein;protein_id=WP_011408408.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4826422 4826616 . - . ID=gene-LLC55_RS22625;Name=LLC55_RS22625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22625;old_locus_tag=LLC55_22645 NZ_CP086200.1 GeneMarkS-2+ CDS 4826422 4826616 . - 0 ID=cds-WP_012444931.1;Parent=gene-LLC55_RS22625;Dbxref=Genbank:WP_012444931.1;Name=WP_012444931.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS22625;product=hypothetical protein;protein_id=WP_012444931.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4826885 4831315 . - . ID=gene-LLC55_RS22630;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS22630;old_locus_tag=LLC55_22650 NZ_CP086200.1 Protein Homology CDS 4826885 4831315 . - 0 ID=cds-WP_228329671.1;Parent=gene-LLC55_RS22630;Dbxref=Genbank:WP_228329671.1;Name=WP_228329671.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408929.1;locus_tag=LLC55_RS22630;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_228329671.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4831539 4831838 . - . ID=gene-LLC55_RS22635;Name=LLC55_RS22635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22635;old_locus_tag=LLC55_22655 NZ_CP086200.1 Protein Homology CDS 4831539 4831838 . - 0 ID=cds-WP_011408408.1-4;Parent=gene-LLC55_RS22635;Dbxref=Genbank:WP_011408408.1;Name=WP_011408408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450394.1;locus_tag=LLC55_RS22635;product=hypothetical protein;protein_id=WP_011408408.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4831842 4832036 . - . ID=gene-LLC55_RS22640;Name=LLC55_RS22640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22640;old_locus_tag=LLC55_22660 NZ_CP086200.1 GeneMarkS-2+ CDS 4831842 4832036 . - 0 ID=cds-WP_042464821.1-4;Parent=gene-LLC55_RS22640;Dbxref=Genbank:WP_042464821.1;Name=WP_042464821.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS22640;product=hypothetical protein;protein_id=WP_042464821.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4832305 4836024 . - . ID=gene-LLC55_RS22645;Name=avrBs3;gbkey=Gene;gene=avrBs3;gene_biotype=protein_coding;locus_tag=LLC55_RS22645;old_locus_tag=LLC55_22665 NZ_CP086200.1 Protein Homology CDS 4832305 4836024 . - 0 ID=cds-WP_228329672.1;Parent=gene-LLC55_RS22645;Dbxref=Genbank:WP_228329672.1;Name=WP_228329672.1;Ontology_term=GO:0030254;gbkey=CDS;gene=avrBs3;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041182630.1;locus_tag=LLC55_RS22645;product=type III secretion system effector avirulence protein AvrBs3;protein_id=WP_228329672.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4836233 4836943 . - . ID=gene-LLC55_RS22650;Name=LLC55_RS22650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22650;old_locus_tag=LLC55_22670 NZ_CP086200.1 Protein Homology CDS 4836233 4836943 . - 0 ID=cds-WP_173340389.1;Parent=gene-LLC55_RS22650;Dbxref=Genbank:WP_173340389.1;Name=WP_173340389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167280.1;locus_tag=LLC55_RS22650;product=C-type cytochrome biogenesis protein;protein_id=WP_173340389.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4836937 4837434 . - . ID=gene-LLC55_RS22655;Name=LLC55_RS22655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22655;old_locus_tag=LLC55_22675 NZ_CP086200.1 Protein Homology CDS 4836937 4837434 . - 0 ID=cds-WP_027703454.1;Parent=gene-LLC55_RS22655;Dbxref=Genbank:WP_027703454.1;Name=WP_027703454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914849.1;locus_tag=LLC55_RS22655;product=cytochrome c-type biogenesis protein CcmH;protein_id=WP_027703454.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4837434 4837976 . - . ID=gene-LLC55_RS22660;Name=LLC55_RS22660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22660;old_locus_tag=LLC55_22680 NZ_CP086200.1 Protein Homology CDS 4837434 4837976 . - 0 ID=cds-WP_011259571.1;Parent=gene-LLC55_RS22660;Dbxref=Genbank:WP_011259571.1;Name=WP_011259571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503717.1;locus_tag=LLC55_RS22660;product=DsbE family thiol:disulfide interchange protein;protein_id=WP_011259571.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4837973 4839961 . - . ID=gene-LLC55_RS22665;Name=LLC55_RS22665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22665;old_locus_tag=LLC55_22685 NZ_CP086200.1 Protein Homology CDS 4837973 4839961 . - 0 ID=cds-WP_011259570.1;Parent=gene-LLC55_RS22665;Dbxref=Genbank:WP_011259570.1;Name=WP_011259570.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259570.1;locus_tag=LLC55_RS22665;product=heme lyase CcmF/NrfE family subunit;protein_id=WP_011259570.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4840025 4840495 . - . ID=gene-LLC55_RS22670;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=LLC55_RS22670;old_locus_tag=LLC55_22690 NZ_CP086200.1 Protein Homology CDS 4840025 4840495 . - 0 ID=cds-WP_011259569.1;Parent=gene-LLC55_RS22670;Dbxref=Genbank:WP_011259569.1;Name=WP_011259569.1;gbkey=CDS;gene=ccmE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155058.1;locus_tag=LLC55_RS22670;product=cytochrome c maturation protein CcmE;protein_id=WP_011259569.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4840492 4840698 . - . ID=gene-LLC55_RS22675;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=LLC55_RS22675;old_locus_tag=LLC55_22695 NZ_CP086200.1 Protein Homology CDS 4840492 4840698 . - 0 ID=cds-WP_011408923.1;Parent=gene-LLC55_RS22675;Dbxref=Genbank:WP_011408923.1;Name=WP_011408923.1;Ontology_term=GO:0015886,GO:0017004,GO:0016020;gbkey=CDS;gene=ccmD;go_component=membrane|0016020||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155059.1;locus_tag=LLC55_RS22675;product=heme exporter protein CcmD;protein_id=WP_011408923.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4840695 4841453 . - . ID=gene-LLC55_RS22680;Name=ccmC;gbkey=Gene;gene=ccmC;gene_biotype=protein_coding;locus_tag=LLC55_RS22680;old_locus_tag=LLC55_22700 NZ_CP086200.1 Protein Homology CDS 4840695 4841453 . - 0 ID=cds-WP_069964830.1;Parent=gene-LLC55_RS22680;Dbxref=Genbank:WP_069964830.1;Name=WP_069964830.1;Ontology_term=GO:0015886,GO:0015232,GO:0016020;gbkey=CDS;gene=ccmC;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302345.1;locus_tag=LLC55_RS22680;product=heme ABC transporter permease CcmC;protein_id=WP_069964830.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4841464 4842789 . - . ID=gene-LLC55_RS22685;Name=LLC55_RS22685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22685;old_locus_tag=LLC55_22705 NZ_CP086200.1 Protein Homology CDS 4841464 4842789 . - 0 ID=cds-WP_011259567.1;Parent=gene-LLC55_RS22685;Dbxref=Genbank:WP_011259567.1;Name=WP_011259567.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363686.1;locus_tag=LLC55_RS22685;product=S8 family serine peptidase;protein_id=WP_011259567.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4842786 4843442 . - . ID=gene-LLC55_RS22690;Name=LLC55_RS22690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22690;old_locus_tag=LLC55_22710 NZ_CP086200.1 Protein Homology CDS 4842786 4843442 . - 0 ID=cds-WP_044756734.1;Parent=gene-LLC55_RS22690;Dbxref=Genbank:WP_044756734.1;Name=WP_044756734.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169443.1;locus_tag=LLC55_RS22690;product=zf-HC2 domain-containing protein;protein_id=WP_044756734.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4843439 4844032 . - . ID=gene-LLC55_RS22695;Name=LLC55_RS22695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22695;old_locus_tag=LLC55_22715 NZ_CP086200.1 Protein Homology CDS 4843439 4844032 . - 0 ID=cds-WP_178383647.1;Parent=gene-LLC55_RS22695;Dbxref=Genbank:WP_178383647.1;Name=WP_178383647.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848631.1;locus_tag=LLC55_RS22695;product=sigma-70 family RNA polymerase sigma factor;protein_id=WP_178383647.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4844084 4844872 . - . ID=gene-LLC55_RS22700;Name=LLC55_RS22700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22700;old_locus_tag=LLC55_22720 NZ_CP086200.1 Protein Homology CDS 4844084 4844872 . - 0 ID=cds-WP_033013216.1;Parent=gene-LLC55_RS22700;Dbxref=Genbank:WP_033013216.1;Name=WP_033013216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117552.1;locus_tag=LLC55_RS22700;product=hypothetical protein;protein_id=WP_033013216.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4845315 4845707 . - . ID=gene-LLC55_RS22705;Name=LLC55_RS22705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22705;old_locus_tag=LLC55_22725 NZ_CP086200.1 Protein Homology CDS 4845315 4845707 . - 0 ID=cds-WP_011408918.1;Parent=gene-LLC55_RS22705;Dbxref=Genbank:WP_011408918.1;Name=WP_011408918.1;Ontology_term=GO:0009055,GO:0020037;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347070.1;locus_tag=LLC55_RS22705;product=c-type cytochrome;protein_id=WP_011408918.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4845733 4847073 . - . ID=gene-LLC55_RS22710;Name=LLC55_RS22710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22710;old_locus_tag=LLC55_22730 NZ_CP086200.1 Protein Homology CDS 4845733 4847073 . - 0 ID=cds-WP_012444527.1;Parent=gene-LLC55_RS22710;Dbxref=Genbank:WP_012444527.1;Name=WP_012444527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914948.1;locus_tag=LLC55_RS22710;product=hypothetical protein;protein_id=WP_012444527.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4847157 4847777 . - . ID=gene-LLC55_RS22715;Name=LLC55_RS22715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22715;old_locus_tag=LLC55_22735 NZ_CP086200.1 Protein Homology CDS 4847157 4847777 . - 0 ID=cds-WP_171970769.1;Parent=gene-LLC55_RS22715;Dbxref=Genbank:WP_171970769.1;Name=WP_171970769.1;Ontology_term=GO:0009055,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089947.1;locus_tag=LLC55_RS22715;product=cytochrome b/b6 domain-containing protein;protein_id=WP_171970769.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4848082 4848513 . + . ID=gene-LLC55_RS22720;Name=LLC55_RS22720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22720;old_locus_tag=LLC55_22740 NZ_CP086200.1 Protein Homology CDS 4848082 4848513 . + 0 ID=cds-WP_011259561.1;Parent=gene-LLC55_RS22720;Dbxref=Genbank:WP_011259561.1;Name=WP_011259561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914950.1;locus_tag=LLC55_RS22720;product=FdtA/QdtA family cupin domain-containing protein;protein_id=WP_011259561.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4848510 4849181 . + . ID=gene-LLC55_RS22725;Name=LLC55_RS22725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22725;old_locus_tag=LLC55_22745 NZ_CP086200.1 Protein Homology CDS 4848510 4849181 . + 0 ID=cds-WP_011408914.1;Parent=gene-LLC55_RS22725;Dbxref=Genbank:WP_011408914.1;Name=WP_011408914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966838.1;locus_tag=LLC55_RS22725;product=acetyltransferase;protein_id=WP_011408914.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4849185 4850138 . + . ID=gene-LLC55_RS22730;Name=LLC55_RS22730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22730;old_locus_tag=LLC55_22750 NZ_CP086200.1 Protein Homology CDS 4849185 4850138 . + 0 ID=cds-WP_011408913.1;Parent=gene-LLC55_RS22730;Dbxref=Genbank:WP_011408913.1;Name=WP_011408913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155068.1;locus_tag=LLC55_RS22730;product=hypothetical protein;protein_id=WP_011408913.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4850125 4851057 . + . ID=gene-LLC55_RS22735;Name=LLC55_RS22735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22735;old_locus_tag=LLC55_22755 NZ_CP086200.1 Protein Homology CDS 4850125 4851057 . + 0 ID=cds-WP_011408912.1;Parent=gene-LLC55_RS22735;Dbxref=Genbank:WP_011408912.1;Name=WP_011408912.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408912.1;locus_tag=LLC55_RS22735;product=GNAT family N-acetyltransferase;protein_id=WP_011408912.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4851045 4852169 . + . ID=gene-LLC55_RS22740;Name=LLC55_RS22740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22740;old_locus_tag=LLC55_22760 NZ_CP086200.1 Protein Homology CDS 4851045 4852169 . + 0 ID=cds-WP_011259557.1;Parent=gene-LLC55_RS22740;Dbxref=Genbank:WP_011259557.1;Name=WP_011259557.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452982.1;locus_tag=LLC55_RS22740;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_011259557.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4852166 4853419 . + . ID=gene-LLC55_RS22745;Name=LLC55_RS22745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22745;old_locus_tag=LLC55_22765 NZ_CP086200.1 Protein Homology CDS 4852166 4853419 . + 0 ID=cds-WP_011259556.1;Parent=gene-LLC55_RS22745;Dbxref=Genbank:WP_011259556.1;Name=WP_011259556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089953.1;locus_tag=LLC55_RS22745;product=O-antigen translocase;protein_id=WP_011259556.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4853416 4854366 . + . ID=gene-LLC55_RS22750;Name=LLC55_RS22750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22750;old_locus_tag=LLC55_22770 NZ_CP086200.1 Protein Homology CDS 4853416 4854366 . + 0 ID=cds-WP_011259555.1;Parent=gene-LLC55_RS22750;Dbxref=Genbank:WP_011259555.1;Name=WP_011259555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089954.1;locus_tag=LLC55_RS22750;product=glycosyltransferase;protein_id=WP_011259555.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4854363 4855496 . + . ID=gene-LLC55_RS22755;Name=LLC55_RS22755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22755;old_locus_tag=LLC55_22775 NZ_CP086200.1 Protein Homology CDS 4854363 4855496 . + 0 ID=cds-WP_027703450.1;Parent=gene-LLC55_RS22755;Dbxref=Genbank:WP_027703450.1;Name=WP_027703450.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924253.1;locus_tag=LLC55_RS22755;product=hypothetical protein;protein_id=WP_027703450.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4855542 4856393 . + . ID=gene-LLC55_RS22760;Name=LLC55_RS22760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22760;old_locus_tag=LLC55_22780 NZ_CP086200.1 Protein Homology CDS 4855542 4856393 . + 0 ID=cds-WP_011259554.1;Parent=gene-LLC55_RS22760;Dbxref=Genbank:WP_011259554.1;Name=WP_011259554.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301333.1;locus_tag=LLC55_RS22760;product=Wzz/FepE/Etk N-terminal domain-containing protein;protein_id=WP_011259554.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4856674 4857516 . + . ID=gene-LLC55_RS22765;Name=LLC55_RS22765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22765;old_locus_tag=LLC55_22785 NZ_CP086200.1 Protein Homology CDS 4856674 4857516 . + 0 ID=cds-WP_011259553.1;Parent=gene-LLC55_RS22765;Dbxref=Genbank:WP_011259553.1;Name=WP_011259553.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966827.1;locus_tag=LLC55_RS22765;product=class I SAM-dependent methyltransferase;protein_id=WP_011259553.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4857529 4858764 . + . ID=gene-LLC55_RS22770;Name=LLC55_RS22770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22770;old_locus_tag=LLC55_22790 NZ_CP086200.1 Protein Homology CDS 4857529 4858764 . + 0 ID=cds-WP_027703449.1;Parent=gene-LLC55_RS22770;Dbxref=Genbank:WP_027703449.1;Name=WP_027703449.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159163.1;locus_tag=LLC55_RS22770;product=amidohydrolase family protein;protein_id=WP_027703449.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4858761 4859459 . + . ID=gene-LLC55_RS22775;Name=LLC55_RS22775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22775;old_locus_tag=LLC55_22795 NZ_CP086200.1 Protein Homology CDS 4858761 4859459 . + 0 ID=cds-WP_011408908.1;Parent=gene-LLC55_RS22775;Dbxref=Genbank:WP_011408908.1;Name=WP_011408908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155076.1;locus_tag=LLC55_RS22775;product=class I SAM-dependent methyltransferase;protein_id=WP_011408908.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4859581 4860711 . + . ID=gene-LLC55_RS22780;Name=LLC55_RS22780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22780;old_locus_tag=LLC55_22800 NZ_CP086200.1 Protein Homology CDS 4859581 4860711 . + 0 ID=cds-WP_041182180.1;Parent=gene-LLC55_RS22780;Dbxref=Genbank:WP_041182180.1;Name=WP_041182180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378292.1;locus_tag=LLC55_RS22780;product=glycosyltransferase family 4 protein;protein_id=WP_041182180.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4860708 4861820 . + . ID=gene-LLC55_RS22785;Name=LLC55_RS22785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22785;old_locus_tag=LLC55_22805 NZ_CP086200.1 Protein Homology CDS 4860708 4861820 . + 0 ID=cds-WP_011259549.1;Parent=gene-LLC55_RS22785;Dbxref=Genbank:WP_011259549.1;Name=WP_011259549.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259549.1;locus_tag=LLC55_RS22785;product=glycosyltransferase family 4 protein;protein_id=WP_011259549.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4861919 4862875 . - . ID=gene-LLC55_RS22790;Name=LLC55_RS22790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22790;old_locus_tag=LLC55_22810 NZ_CP086200.1 Protein Homology CDS 4861919 4862875 . - 0 ID=cds-WP_011407237.1-2;Parent=gene-LLC55_RS22790;Dbxref=Genbank:WP_011407237.1;Name=WP_011407237.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407237.1;locus_tag=LLC55_RS22790;product=IS30-like element IS1112a family transposase;protein_id=WP_011407237.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4862982 4864196 . - . ID=gene-LLC55_RS22795;Name=LLC55_RS22795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22795;old_locus_tag=LLC55_22815 NZ_CP086200.1 Protein Homology CDS 4862982 4864196 . - 0 ID=cds-WP_011259548.1;Parent=gene-LLC55_RS22795;Dbxref=Genbank:WP_011259548.1;Name=WP_011259548.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155079.1;locus_tag=LLC55_RS22795;product=nucleotidyltransferase family protein;protein_id=WP_011259548.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4864286 4865806 . - . ID=gene-LLC55_RS22800;Name=LLC55_RS22800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22800;old_locus_tag=LLC55_22820 NZ_CP086200.1 Protein Homology CDS 4864286 4865806 . - 0 ID=cds-WP_012444533.1;Parent=gene-LLC55_RS22800;Dbxref=Genbank:WP_012444533.1;Name=WP_012444533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304795.1;locus_tag=LLC55_RS22800;product=radical SAM protein;protein_id=WP_012444533.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4865939 4866997 . + . ID=gene-LLC55_RS22805;Name=LLC55_RS22805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22805;old_locus_tag=LLC55_22825 NZ_CP086200.1 Protein Homology CDS 4865939 4866997 . + 0 ID=cds-WP_011408904.1;Parent=gene-LLC55_RS22805;Dbxref=Genbank:WP_011408904.1;Name=WP_011408904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408904.1;locus_tag=LLC55_RS22805;product=hypothetical protein;protein_id=WP_011408904.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4867091 4868812 . + . ID=gene-LLC55_RS22810;Name=LLC55_RS22810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22810;old_locus_tag=LLC55_22830 NZ_CP086200.1 Protein Homology CDS 4867091 4868812 . + 0 ID=cds-WP_012444535.1;Parent=gene-LLC55_RS22810;Dbxref=Genbank:WP_012444535.1;Name=WP_012444535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117562.1;locus_tag=LLC55_RS22810;product=ABC transporter ATP-binding protein;protein_id=WP_012444535.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4868927 4869003 . + . ID=gene-LLC55_RS22815;Name=LLC55_RS22815;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS22815;old_locus_tag=LLC55_22835 NZ_CP086200.1 cmsearch ncRNA 4868927 4869003 . + . ID=rna-LLC55_RS22815;Parent=gene-LLC55_RS22815;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS22815;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4868927 4869003 . + . ID=exon-LLC55_RS22815-1;Parent=rna-LLC55_RS22815;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS22815;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4869120 4870535 . - . ID=gene-LLC55_RS22820;Name=LLC55_RS22820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22820;old_locus_tag=LLC55_22840 NZ_CP086200.1 Protein Homology CDS 4869120 4870535 . - 0 ID=cds-WP_011259544.1;Parent=gene-LLC55_RS22820;Dbxref=Genbank:WP_011259544.1;Name=WP_011259544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503687.1;locus_tag=LLC55_RS22820;product=MFS transporter;protein_id=WP_011259544.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4870948 4871024 . - . ID=gene-LLC55_RS22825;Name=LLC55_RS22825;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS22825;old_locus_tag=LLC55_22845 NZ_CP086200.1 cmsearch ncRNA 4870948 4871024 . - . ID=rna-LLC55_RS22825;Parent=gene-LLC55_RS22825;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS22825;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4870948 4871024 . - . ID=exon-LLC55_RS22825-1;Parent=rna-LLC55_RS22825;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS22825;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4871340 4872341 . + . ID=gene-LLC55_RS22830;Name=LLC55_RS22830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22830;old_locus_tag=LLC55_22850 NZ_CP086200.1 Protein Homology CDS 4871340 4872341 . + 0 ID=cds-WP_011259543.1;Parent=gene-LLC55_RS22830;Dbxref=Genbank:WP_011259543.1;Name=WP_011259543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155084.1;locus_tag=LLC55_RS22830;product=LLM class flavin-dependent oxidoreductase;protein_id=WP_011259543.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4872402 4872902 . + . ID=gene-LLC55_RS22835;Name=LLC55_RS22835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22835;old_locus_tag=LLC55_22855 NZ_CP086200.1 Protein Homology CDS 4872402 4872902 . + 0 ID=cds-WP_011408903.1;Parent=gene-LLC55_RS22835;Dbxref=Genbank:WP_011408903.1;Name=WP_011408903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966811.1;locus_tag=LLC55_RS22835;product=pyridoxamine 5'-phosphate oxidase family protein;protein_id=WP_011408903.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4872934 4873603 . - . ID=gene-LLC55_RS22840;Name=LLC55_RS22840;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS22840;old_locus_tag=LLC55_22860;pseudo=true NZ_CP086200.1 Protein Homology CDS 4872934 4873603 . - 0 ID=cds-LLC55_RS22840;Parent=gene-LLC55_RS22840;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301803.1;locus_tag=LLC55_RS22840;product=exopolysaccharide biosynthesis protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4873587 4874927 . - . ID=gene-LLC55_RS22845;Name=LLC55_RS22845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22845;old_locus_tag=LLC55_22865 NZ_CP086200.1 Protein Homology CDS 4873587 4874927 . - 0 ID=cds-WP_011259540.1;Parent=gene-LLC55_RS22845;Dbxref=Genbank:WP_011259540.1;Name=WP_011259540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051102.1;locus_tag=LLC55_RS22845;product=hemolysin family protein;protein_id=WP_011259540.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4875200 4875826 . + . ID=gene-LLC55_RS22850;Name=LLC55_RS22850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22850;old_locus_tag=LLC55_22870 NZ_CP086200.1 Protein Homology CDS 4875200 4875826 . + 0 ID=cds-WP_011408901.1;Parent=gene-LLC55_RS22850;Dbxref=Genbank:WP_011408901.1;Name=WP_011408901.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992439.1;locus_tag=LLC55_RS22850;product=DUF47 family protein;protein_id=WP_011408901.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4875836 4876963 . + . ID=gene-LLC55_RS22855;Name=LLC55_RS22855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22855;old_locus_tag=LLC55_22875 NZ_CP086200.1 Protein Homology CDS 4875836 4876963 . + 0 ID=cds-WP_011259538.1;Parent=gene-LLC55_RS22855;Dbxref=Genbank:WP_011259538.1;Name=WP_011259538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914989.1;locus_tag=LLC55_RS22855;product=inorganic phosphate transporter;protein_id=WP_011259538.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4877040 4877801 . + . ID=gene-LLC55_RS22860;Name=LLC55_RS22860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22860;old_locus_tag=LLC55_22880 NZ_CP086200.1 Protein Homology CDS 4877040 4877801 . + 0 ID=cds-WP_011408900.1;Parent=gene-LLC55_RS22860;Dbxref=Genbank:WP_011408900.1;Name=WP_011408900.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155090.1;locus_tag=LLC55_RS22860;product=YdcF family protein;protein_id=WP_011408900.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4877859 4879367 . - . ID=gene-LLC55_RS22865;Name=LLC55_RS22865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22865;old_locus_tag=LLC55_22885 NZ_CP086200.1 Protein Homology CDS 4877859 4879367 . - 0 ID=cds-WP_075242259.1;Parent=gene-LLC55_RS22865;Dbxref=Genbank:WP_075242259.1;Name=WP_075242259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166236.1;locus_tag=LLC55_RS22865;product=S10 family peptidase;protein_id=WP_075242259.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4879783 4880581 . + . ID=gene-LLC55_RS22870;Name=LLC55_RS22870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22870;old_locus_tag=LLC55_22890 NZ_CP086200.1 Protein Homology CDS 4879783 4880054 . + 0 ID=cds-WP_094187731.1-3;Parent=gene-LLC55_RS22870;Dbxref=Genbank:WP_094187731.1;Name=WP_094187731.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS22870;product=IS5 family transposase;protein_id=WP_094187731.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4880053 4880581 . + 1 ID=cds-WP_094187731.1-3;Parent=gene-LLC55_RS22870;Dbxref=Genbank:WP_094187731.1;Name=WP_094187731.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611817.1;locus_tag=LLC55_RS22870;product=IS5 family transposase;protein_id=WP_094187731.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4880600 4882489 . - . ID=gene-LLC55_RS22875;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=LLC55_RS22875;old_locus_tag=LLC55_22895 NZ_CP086200.1 Protein Homology CDS 4880600 4882489 . - 0 ID=cds-WP_011408898.1;Parent=gene-LLC55_RS22875;Dbxref=Genbank:WP_011408898.1;Name=WP_011408898.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parE;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237730.1;locus_tag=LLC55_RS22875;product=DNA topoisomerase IV subunit B;protein_id=WP_011408898.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4882654 4882896 . + . ID=gene-LLC55_RS22880;Name=LLC55_RS22880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22880;old_locus_tag=LLC55_22900 NZ_CP086200.1 Protein Homology CDS 4882654 4882896 . + 0 ID=cds-WP_011259533.1;Parent=gene-LLC55_RS22880;Dbxref=Genbank:WP_011259533.1;Name=WP_011259533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481819.1;locus_tag=LLC55_RS22880;product=hypothetical protein;protein_id=WP_011259533.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4883071 4884735 . + . ID=gene-LLC55_RS22885;Name=LLC55_RS22885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22885;old_locus_tag=LLC55_22905 NZ_CP086200.1 Protein Homology CDS 4883071 4884735 . + 0 ID=cds-WP_011259532.1;Parent=gene-LLC55_RS22885;Dbxref=Genbank:WP_011259532.1;Name=WP_011259532.1;Ontology_term=GO:0006221,GO:0006241,GO:0003883;gbkey=CDS;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,CTP biosynthetic process|0006241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481821.1;locus_tag=LLC55_RS22885;product=CTP synthase;protein_id=WP_011259532.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4884939 4885769 . + . ID=gene-LLC55_RS22890;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=LLC55_RS22890;old_locus_tag=LLC55_22910 NZ_CP086200.1 Protein Homology CDS 4884939 4885769 . + 0 ID=cds-WP_011259531.1;Parent=gene-LLC55_RS22890;Dbxref=Genbank:WP_011259531.1;Name=WP_011259531.1;Ontology_term=GO:0009058,GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992423.1;locus_tag=LLC55_RS22890;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_011259531.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4885866 4886108 . + . ID=gene-LLC55_RS22895;Name=LLC55_RS22895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22895;old_locus_tag=LLC55_22915 NZ_CP086200.1 Protein Homology CDS 4885866 4886108 . + 0 ID=cds-WP_027703575.1;Parent=gene-LLC55_RS22895;Dbxref=Genbank:WP_027703575.1;Name=WP_027703575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169875.1;locus_tag=LLC55_RS22895;product=hypothetical protein;protein_id=WP_027703575.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4886233 4887525 . + . ID=gene-LLC55_RS22900;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=LLC55_RS22900;old_locus_tag=LLC55_22920 NZ_CP086200.1 Protein Homology CDS 4886233 4887525 . + 0 ID=cds-WP_011408895.1;Parent=gene-LLC55_RS22900;Dbxref=Genbank:WP_011408895.1;Name=WP_011408895.1;Ontology_term=GO:0006096,GO:0004634;gbkey=CDS;gene=eno;go_function=phosphopyruvate hydratase activity|0004634||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808113.1;locus_tag=LLC55_RS22900;product=phosphopyruvate hydratase;protein_id=WP_011408895.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4887529 4887894 . + . ID=gene-LLC55_RS22905;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=LLC55_RS22905;old_locus_tag=LLC55_22925 NZ_CP086200.1 Protein Homology CDS 4887529 4887894 . + 0 ID=cds-WP_011259528.1;Parent=gene-LLC55_RS22905;Dbxref=Genbank:WP_011259528.1;Name=WP_011259528.1;gbkey=CDS;gene=ftsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259528.1;locus_tag=LLC55_RS22905;product=cell division protein FtsB;protein_id=WP_011259528.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4887891 4888709 . + . ID=gene-LLC55_RS22910;Name=ispD;gbkey=Gene;gene=ispD;gene_biotype=protein_coding;locus_tag=LLC55_RS22910;old_locus_tag=LLC55_22930 NZ_CP086200.1 Protein Homology CDS 4887891 4888709 . + 0 ID=cds-WP_011408894.1;Parent=gene-LLC55_RS22910;Dbxref=Genbank:WP_011408894.1;Name=WP_011408894.1;Ontology_term=GO:0019288,GO:0050518;gbkey=CDS;gene=ispD;go_function=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|0050518||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503668.1;locus_tag=LLC55_RS22910;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_011408894.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4888769 4888842 . + . ID=gene-LLC55_RS22915;Name=LLC55_RS22915;gbkey=Gene;gene_biotype=ncRNA;locus_tag=LLC55_RS22915;old_locus_tag=LLC55_22935 NZ_CP086200.1 cmsearch ncRNA 4888769 4888842 . + . ID=rna-LLC55_RS22915;Parent=gene-LLC55_RS22915;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS22915;product=sX9 sRNA NZ_CP086200.1 cmsearch exon 4888769 4888842 . + . ID=exon-LLC55_RS22915-1;Parent=rna-LLC55_RS22915;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=LLC55_RS22915;product=sX9 sRNA NZ_CP086200.1 RefSeq gene 4888865 4889356 . + . ID=gene-LLC55_RS22920;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=LLC55_RS22920;old_locus_tag=LLC55_22940 NZ_CP086200.1 Protein Homology CDS 4888865 4889356 . + 0 ID=cds-WP_011259526.1;Parent=gene-LLC55_RS22920;Dbxref=Genbank:WP_011259526.1;Name=WP_011259526.1;Ontology_term=GO:0019288,GO:0008685;gbkey=CDS;gene=ispF;go_function=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity|0008685||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453316.1;locus_tag=LLC55_RS22920;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_011259526.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4889477 4890586 . + . ID=gene-LLC55_RS22925;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;locus_tag=LLC55_RS22925;old_locus_tag=LLC55_22945 NZ_CP086200.1 Protein Homology CDS 4889477 4890586 . + 0 ID=cds-WP_011259525.1;Parent=gene-LLC55_RS22925;Dbxref=Genbank:WP_011259525.1;Name=WP_011259525.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503666.1;locus_tag=LLC55_RS22925;product=tRNA pseudouridine(13) synthase TruD;protein_id=WP_011259525.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4890994 4891533 . - . ID=gene-LLC55_RS22930;Name=LLC55_RS22930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22930;old_locus_tag=LLC55_22950 NZ_CP086200.1 Protein Homology CDS 4890994 4891533 . - 0 ID=cds-WP_011408893.1;Parent=gene-LLC55_RS22930;Dbxref=Genbank:WP_011408893.1;Name=WP_011408893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237727.1;locus_tag=LLC55_RS22930;product=Smr/MutS family protein;protein_id=WP_011408893.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4891633 4892412 . + . ID=gene-LLC55_RS22935;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=LLC55_RS22935;old_locus_tag=LLC55_22955 NZ_CP086200.1 Protein Homology CDS 4891633 4892412 . + 0 ID=cds-WP_011408892.1;Parent=gene-LLC55_RS22935;Dbxref=Genbank:WP_011408892.1;Name=WP_011408892.1;Ontology_term=GO:0008252;gbkey=CDS;gene=surE;go_function=nucleotidase activity|0008252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305385.1;locus_tag=LLC55_RS22935;product=5'/3'-nucleotidase SurE;protein_id=WP_011408892.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4892409 4893086 . + . ID=gene-LLC55_RS22940;Name=LLC55_RS22940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22940;old_locus_tag=LLC55_22960 NZ_CP086200.1 Protein Homology CDS 4892409 4893086 . + 0 ID=cds-WP_011259522.1;Parent=gene-LLC55_RS22940;Dbxref=Genbank:WP_011259522.1;Name=WP_011259522.1;Ontology_term=GO:0036211,GO:0004719;gbkey=CDS;go_function=protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|0004719||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503664.1;locus_tag=LLC55_RS22940;product=protein-L-isoaspartate(D-aspartate) O-methyltransferase;protein_id=WP_011259522.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4893105 4893719 . + . ID=gene-LLC55_RS22945;Name=LLC55_RS22945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22945;old_locus_tag=LLC55_22965 NZ_CP086200.1 Protein Homology CDS 4893105 4893719 . + 0 ID=cds-WP_011259521.1;Parent=gene-LLC55_RS22945;Dbxref=Genbank:WP_011259521.1;Name=WP_011259521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481846.1;locus_tag=LLC55_RS22945;product=DedA family protein;protein_id=WP_011259521.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4893716 4894489 . + . ID=gene-LLC55_RS22950;Name=LLC55_RS22950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22950;old_locus_tag=LLC55_22970 NZ_CP086200.1 Protein Homology CDS 4893716 4894489 . + 0 ID=cds-WP_011408891.1;Parent=gene-LLC55_RS22950;Dbxref=Genbank:WP_011408891.1;Name=WP_011408891.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481848.1;locus_tag=LLC55_RS22950;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=WP_011408891.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4894682 4895056 . - . ID=gene-LLC55_RS22955;Name=LLC55_RS22955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22955;old_locus_tag=LLC55_22975 NZ_CP086200.1 Protein Homology CDS 4894682 4895056 . - 0 ID=cds-WP_011259519.1;Parent=gene-LLC55_RS22955;Dbxref=Genbank:WP_011259519.1;Name=WP_011259519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365690.1;locus_tag=LLC55_RS22955;product=Mth938-like domain-containing protein;protein_id=WP_011259519.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4895072 4895377 . - . ID=gene-LLC55_RS22960;Name=yhbY;gbkey=Gene;gene=yhbY;gene_biotype=protein_coding;locus_tag=LLC55_RS22960;old_locus_tag=LLC55_22980 NZ_CP086200.1 Protein Homology CDS 4895072 4895377 . - 0 ID=cds-WP_011259518.1;Parent=gene-LLC55_RS22960;Dbxref=Genbank:WP_011259518.1;Name=WP_011259518.1;Ontology_term=GO:0008150,GO:0003723,GO:0005737;gbkey=CDS;gene=yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300317.1;locus_tag=LLC55_RS22960;product=ribosome assembly RNA-binding protein YhbY;protein_id=WP_011259518.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4895443 4896075 . + . ID=gene-LLC55_RS22965;Name=rlmE;gbkey=Gene;gene=rlmE;gene_biotype=protein_coding;locus_tag=LLC55_RS22965;old_locus_tag=LLC55_22985 NZ_CP086200.1 Protein Homology CDS 4895443 4896075 . + 0 ID=cds-WP_011408890.1;Parent=gene-LLC55_RS22965;Dbxref=Genbank:WP_011408890.1;Name=WP_011408890.1;Ontology_term=GO:0001510,GO:0006364,GO:0016436;gbkey=CDS;gene=rlmE;go_function=rRNA (uridine) methyltransferase activity|0016436||IEA;go_process=RNA methylation|0001510||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924322.1;locus_tag=LLC55_RS22965;product=23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE;protein_id=WP_011408890.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4896137 4898077 . + . ID=gene-LLC55_RS22970;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=LLC55_RS22970;old_locus_tag=LLC55_22990 NZ_CP086200.1 Protein Homology CDS 4896137 4898077 . + 0 ID=cds-WP_012444551.1;Parent=gene-LLC55_RS22970;Dbxref=Genbank:WP_012444551.1;Name=WP_012444551.1;Ontology_term=GO:0006508,GO:0051301,GO:0004222,GO:0016887;gbkey=CDS;gene=ftsH;go_function=metalloendopeptidase activity|0004222||IEA,ATP hydrolysis activity|0016887||IEA;go_process=proteolysis|0006508||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481854.1;locus_tag=LLC55_RS22970;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_012444551.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4898197 4899099 . + . ID=gene-LLC55_RS22975;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=LLC55_RS22975;old_locus_tag=LLC55_22995 NZ_CP086200.1 Protein Homology CDS 4898197 4899099 . + 0 ID=cds-WP_027703574.1;Parent=gene-LLC55_RS22975;Dbxref=Genbank:WP_027703574.1;Name=WP_027703574.1;Ontology_term=GO:0009396,GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453304.1;locus_tag=LLC55_RS22975;product=dihydropteroate synthase;protein_id=WP_027703574.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4899099 4900082 . + . ID=gene-LLC55_RS22980;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=LLC55_RS22980;old_locus_tag=LLC55_23000 NZ_CP086200.1 Protein Homology CDS 4899099 4900082 . + 0 ID=cds-WP_011408887.1;Parent=gene-LLC55_RS22980;Dbxref=Genbank:WP_011408887.1;Name=WP_011408887.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155109.1;locus_tag=LLC55_RS22980;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_011408887.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4900160 4900438 . + . ID=gene-LLC55_RS22985;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=LLC55_RS22985;old_locus_tag=LLC55_23005 NZ_CP086200.1 Protein Homology CDS 4900160 4900438 . + 0 ID=cds-WP_005915027.1;Parent=gene-LLC55_RS22985;Dbxref=Genbank:WP_005915027.1;Name=WP_005915027.1;Ontology_term=GO:0006355,GO:0003723;gbkey=CDS;gene=hfq;go_function=RNA binding|0003723||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801494.1;locus_tag=LLC55_RS22985;product=RNA chaperone Hfq;protein_id=WP_005915027.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4900450 4901769 . + . ID=gene-LLC55_RS22990;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=LLC55_RS22990;old_locus_tag=LLC55_23010 NZ_CP086200.1 Protein Homology CDS 4900450 4901769 . + 0 ID=cds-WP_011259513.1;Parent=gene-LLC55_RS22990;Dbxref=Genbank:WP_011259513.1;Name=WP_011259513.1;Ontology_term=GO:0005525;gbkey=CDS;gene=hflX;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503654.1;locus_tag=LLC55_RS22990;product=GTPase HflX;protein_id=WP_011259513.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4902201 4902695 . + . ID=gene-LLC55_RS22995;Name=LLC55_RS22995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS22995;old_locus_tag=LLC55_23015 NZ_CP086200.1 Protein Homology CDS 4902201 4902695 . + 0 ID=cds-WP_011259512.1;Parent=gene-LLC55_RS22995;Dbxref=Genbank:WP_011259512.1;Name=WP_011259512.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481865.1;locus_tag=LLC55_RS22995;product=CinA family protein;protein_id=WP_011259512.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4903173 4904849 . + . ID=gene-LLC55_RS23000;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=LLC55_RS23000;old_locus_tag=LLC55_23020 NZ_CP086200.1 Protein Homology CDS 4903173 4904849 . + 0 ID=cds-WP_011408886.1;Parent=gene-LLC55_RS23000;Dbxref=Genbank:WP_011408886.1;Name=WP_011408886.1;Ontology_term=GO:0006744,GO:0016709;gbkey=CDS;gene=ubiB;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155111.1;locus_tag=LLC55_RS23000;product=2-polyprenylphenol 6-hydroxylase;protein_id=WP_011408886.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4904938 4905579 . + . ID=gene-LLC55_RS23005;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=LLC55_RS23005;old_locus_tag=LLC55_23025 NZ_CP086200.1 Protein Homology CDS 4904938 4905579 . + 0 ID=cds-WP_011408885.1;Parent=gene-LLC55_RS23005;Dbxref=Genbank:WP_011408885.1;Name=WP_011408885.1;Ontology_term=GO:0006282,GO:0006355,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=regulation of DNA repair|0006282||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269877.1;locus_tag=LLC55_RS23005;product=transcriptional repressor LexA;protein_id=WP_011408885.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4905752 4906786 . + . ID=gene-LLC55_RS23010;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=LLC55_RS23010;old_locus_tag=LLC55_23030 NZ_CP086200.1 Protein Homology CDS 4905752 4906786 . + 0 ID=cds-WP_011408884.1;Parent=gene-LLC55_RS23010;Dbxref=Genbank:WP_011408884.1;Name=WP_011408884.1;Ontology_term=GO:0006281,GO:0006310,GO:0009432,GO:0003677,GO:0008094,GO:0005737;gbkey=CDS;gene=recA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051113.1;locus_tag=LLC55_RS23010;product=recombinase RecA;protein_id=WP_011408884.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4907089 4907577 . + . ID=gene-LLC55_RS23015;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=LLC55_RS23015;old_locus_tag=LLC55_23035 NZ_CP086200.1 Protein Homology CDS 4907089 4907577 . + 0 ID=cds-WP_012444556.1;Parent=gene-LLC55_RS23015;Dbxref=Genbank:WP_012444556.1;Name=WP_012444556.1;gbkey=CDS;gene=recX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966764.1;locus_tag=LLC55_RS23015;product=recombination regulator RecX;protein_id=WP_012444556.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4907679 4910327 . + . ID=gene-LLC55_RS23020;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=LLC55_RS23020;old_locus_tag=LLC55_23040 NZ_CP086200.1 Protein Homology CDS 4907679 4910327 . + 0 ID=cds-WP_011259507.1;Parent=gene-LLC55_RS23020;Dbxref=Genbank:WP_011259507.1;Name=WP_011259507.1;Ontology_term=GO:0006419,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347112.1;locus_tag=LLC55_RS23020;product=alanine--tRNA ligase;protein_id=WP_011259507.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4910467 4910679 . + . ID=gene-LLC55_RS23025;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;locus_tag=LLC55_RS23025;old_locus_tag=LLC55_23045 NZ_CP086200.1 Protein Homology CDS 4910467 4910679 . + 0 ID=cds-WP_003481884.1;Parent=gene-LLC55_RS23025;Dbxref=Genbank:WP_003481884.1;Name=WP_003481884.1;Ontology_term=GO:0006109,GO:0006402,GO:0003723;gbkey=CDS;gene=csrA;go_function=RNA binding|0003723||IEA;go_process=regulation of carbohydrate metabolic process|0006109||IEA,mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481884.1;locus_tag=LLC55_RS23025;product=carbon storage regulator CsrA;protein_id=WP_003481884.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4910767 4910859 . + . ID=gene-LLC55_RS23030;Name=LLC55_RS23030;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS23030;old_locus_tag=LLC55_23050 NZ_CP086200.1 tRNAscan-SE tRNA 4910767 4910859 . + . ID=rna-LLC55_RS23030;Parent=gene-LLC55_RS23030;anticodon=(pos:4910801..4910803);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS23030;product=tRNA-Ser NZ_CP086200.1 tRNAscan-SE exon 4910767 4910859 . + . ID=exon-LLC55_RS23030-1;Parent=rna-LLC55_RS23030;anticodon=(pos:4910801..4910803);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS23030;product=tRNA-Ser NZ_CP086200.1 RefSeq gene 4911390 4911809 . + . ID=gene-LLC55_RS23035;Name=LLC55_RS23035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23035;old_locus_tag=LLC55_23055 NZ_CP086200.1 Protein Homology CDS 4911390 4911809 . + 0 ID=cds-WP_011408882.1;Parent=gene-LLC55_RS23035;Dbxref=Genbank:WP_011408882.1;Name=WP_011408882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444558.1;locus_tag=LLC55_RS23035;product=helix-turn-helix domain-containing protein;protein_id=WP_011408882.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4912167 4912496 . + . ID=gene-LLC55_RS23040;Name=LLC55_RS23040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23040;old_locus_tag=LLC55_23060 NZ_CP086200.1 Protein Homology CDS 4912167 4912496 . + 0 ID=cds-WP_228329673.1;Parent=gene-LLC55_RS23040;Dbxref=Genbank:WP_228329673.1;Name=WP_228329673.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300766.1;locus_tag=LLC55_RS23040;product=hypothetical protein;protein_id=WP_228329673.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4912682 4913377 . + . ID=gene-LLC55_RS23045;Name=LLC55_RS23045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23045;old_locus_tag=LLC55_23065 NZ_CP086200.1 Protein Homology CDS 4912682 4913377 . + 0 ID=cds-WP_011408881.1;Parent=gene-LLC55_RS23045;Dbxref=Genbank:WP_011408881.1;Name=WP_011408881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408881.1;locus_tag=LLC55_RS23045;product=hypothetical protein;protein_id=WP_011408881.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4913382 4914131 . + . ID=gene-LLC55_RS23050;Name=LLC55_RS23050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23050;old_locus_tag=LLC55_23070 NZ_CP086200.1 Protein Homology CDS 4913382 4914131 . + 0 ID=cds-WP_011259505.1;Parent=gene-LLC55_RS23050;Dbxref=Genbank:WP_011259505.1;Name=WP_011259505.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259505.1;locus_tag=LLC55_RS23050;product=isopentenyl transferase;protein_id=WP_011259505.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4914375 4914842 . + . ID=gene-LLC55_RS23055;Name=LLC55_RS23055;end_range=4914842,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23055;old_locus_tag=LLC55_23075;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4914375 4914842 . + 0 ID=cds-LLC55_RS23055;Parent=gene-LLC55_RS23055;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4914842,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850903.1;locus_tag=LLC55_RS23055;partial=true;product=glycoside hydrolase family 104 protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4914944 4915129 . + . ID=gene-LLC55_RS23060;Name=LLC55_RS23060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23060;old_locus_tag=LLC55_23080 NZ_CP086200.1 GeneMarkS-2+ CDS 4914944 4915129 . + 0 ID=cds-WP_012444564.1;Parent=gene-LLC55_RS23060;Dbxref=Genbank:WP_012444564.1;Name=WP_012444564.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=LLC55_RS23060;product=hypothetical protein;protein_id=WP_012444564.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4915275 4915976 . - . ID=gene-LLC55_RS23065;Name=LLC55_RS23065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23065;old_locus_tag=LLC55_23085 NZ_CP086200.1 Protein Homology CDS 4915275 4915976 . - 0 ID=cds-WP_011259502.1;Parent=gene-LLC55_RS23065;Dbxref=Genbank:WP_011259502.1;Name=WP_011259502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966758.1;locus_tag=LLC55_RS23065;product=pirin family protein;protein_id=WP_011259502.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4916113 4917057 . + . ID=gene-LLC55_RS23070;Name=LLC55_RS23070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23070;old_locus_tag=LLC55_23090 NZ_CP086200.1 Protein Homology CDS 4916113 4917057 . + 0 ID=cds-WP_011259501.1;Parent=gene-LLC55_RS23070;Dbxref=Genbank:WP_011259501.1;Name=WP_011259501.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503104.1;locus_tag=LLC55_RS23070;product=LysR substrate-binding domain-containing protein;protein_id=WP_011259501.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4917102 4918088 . + . ID=gene-LLC55_RS23075;Name=LLC55_RS23075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23075;old_locus_tag=LLC55_23095 NZ_CP086200.1 Protein Homology CDS 4917102 4918088 . + 0 ID=cds-WP_011259500.1;Parent=gene-LLC55_RS23075;Dbxref=Genbank:WP_011259500.1;Name=WP_011259500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155120.1;locus_tag=LLC55_RS23075;product=DedA family protein/thiosulfate sulfurtransferase GlpE;protein_id=WP_011259500.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4918256 4918332 . - . ID=gene-LLC55_RS23080;Name=LLC55_RS23080;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS23080;old_locus_tag=LLC55_23100 NZ_CP086200.1 tRNAscan-SE tRNA 4918256 4918332 . - . ID=rna-LLC55_RS23080;Parent=gene-LLC55_RS23080;anticodon=(pos:complement(4918296..4918298));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS23080;product=tRNA-Arg NZ_CP086200.1 tRNAscan-SE exon 4918256 4918332 . - . ID=exon-LLC55_RS23080-1;Parent=rna-LLC55_RS23080;anticodon=(pos:complement(4918296..4918298));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS23080;product=tRNA-Arg NZ_CP086200.1 RefSeq gene 4918426 4918502 . - . ID=gene-LLC55_RS23085;Name=LLC55_RS23085;gbkey=Gene;gene_biotype=tRNA;locus_tag=LLC55_RS23085;old_locus_tag=LLC55_23105 NZ_CP086200.1 tRNAscan-SE tRNA 4918426 4918502 . - . ID=rna-LLC55_RS23085;Parent=gene-LLC55_RS23085;anticodon=(pos:complement(4918466..4918468));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS23085;product=tRNA-Arg NZ_CP086200.1 tRNAscan-SE exon 4918426 4918502 . - . ID=exon-LLC55_RS23085-1;Parent=rna-LLC55_RS23085;anticodon=(pos:complement(4918466..4918468));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.9;locus_tag=LLC55_RS23085;product=tRNA-Arg NZ_CP086200.1 RefSeq pseudogene 4918543 4919406 . - . ID=gene-LLC55_RS23090;Name=LLC55_RS23090;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23090;old_locus_tag=LLC55_23110;pseudo=true NZ_CP086200.1 Protein Homology CDS 4918543 4919406 . - 0 ID=cds-LLC55_RS23090;Parent=gene-LLC55_RS23090;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966754.1;locus_tag=LLC55_RS23090;product=alpha/beta hydrolase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4919403 4920212 . - . ID=gene-LLC55_RS23095;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=LLC55_RS23095;old_locus_tag=LLC55_23115 NZ_CP086200.1 Protein Homology CDS 4919403 4920212 . - 0 ID=cds-WP_012444567.1;Parent=gene-LLC55_RS23095;Dbxref=Genbank:WP_012444567.1;Name=WP_012444567.1;Ontology_term=GO:0009228,GO:0008902,GO:0008972;gbkey=CDS;gene=thiD;go_function=hydroxymethylpyrimidine kinase activity|0008902||IEA,phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481896.1;locus_tag=LLC55_RS23095;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=WP_012444567.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4920297 4920779 . - . ID=gene-LLC55_RS23100;Name=LLC55_RS23100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23100;old_locus_tag=LLC55_23120 NZ_CP086200.1 Protein Homology CDS 4920297 4920779 . - 0 ID=cds-WP_011408879.1;Parent=gene-LLC55_RS23100;Dbxref=Genbank:WP_011408879.1;Name=WP_011408879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503108.1;locus_tag=LLC55_RS23100;product=hypothetical protein;protein_id=WP_011408879.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4920779 4922176 . - . ID=gene-LLC55_RS23105;Name=LLC55_RS23105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23105;old_locus_tag=LLC55_23125 NZ_CP086200.1 Protein Homology CDS 4920779 4922176 . - 0 ID=cds-WP_011259496.1;Parent=gene-LLC55_RS23105;Dbxref=Genbank:WP_011259496.1;Name=WP_011259496.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365742.1;locus_tag=LLC55_RS23105;product=PhoH family protein;protein_id=WP_011259496.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4922259 4922741 . - . ID=gene-LLC55_RS23110;Name=LLC55_RS23110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23110;old_locus_tag=LLC55_23130 NZ_CP086200.1 Protein Homology CDS 4922259 4922741 . - 0 ID=cds-WP_011259495.1;Parent=gene-LLC55_RS23110;Dbxref=Genbank:WP_011259495.1;Name=WP_011259495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481906.1;locus_tag=LLC55_RS23110;product=peroxiredoxin;protein_id=WP_011259495.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4922779 4923129 . - . ID=gene-LLC55_RS23115;Name=LLC55_RS23115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23115;old_locus_tag=LLC55_23135 NZ_CP086200.1 Protein Homology CDS 4922779 4923129 . - 0 ID=cds-WP_011259494.1;Parent=gene-LLC55_RS23115;Dbxref=Genbank:WP_011259494.1;Name=WP_011259494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300297.1;locus_tag=LLC55_RS23115;product=ribonuclease E inhibitor RraB;protein_id=WP_011259494.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4923141 4923767 . - . ID=gene-LLC55_RS23120;Name=LLC55_RS23120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23120;old_locus_tag=LLC55_23140 NZ_CP086200.1 Protein Homology CDS 4923141 4923767 . - 0 ID=cds-WP_011259493.1;Parent=gene-LLC55_RS23120;Dbxref=Genbank:WP_011259493.1;Name=WP_011259493.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503111.1;locus_tag=LLC55_RS23120;product=glycine cleavage system protein R;protein_id=WP_011259493.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4923861 4924769 . + . ID=gene-LLC55_RS23125;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=LLC55_RS23125;old_locus_tag=LLC55_23145 NZ_CP086200.1 Protein Homology CDS 4923861 4924769 . + 0 ID=cds-WP_011259492.1;Parent=gene-LLC55_RS23125;Dbxref=Genbank:WP_011259492.1;Name=WP_011259492.1;Ontology_term=GO:0009089,GO:0008840;gbkey=CDS;gene=dapA;go_function=4-hydroxy-tetrahydrodipicolinate synthase activity|0008840||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813784.1;locus_tag=LLC55_RS23125;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_011259492.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4924786 4925304 . + . ID=gene-LLC55_RS23130;Name=LLC55_RS23130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23130;old_locus_tag=LLC55_23150 NZ_CP086200.1 Protein Homology CDS 4924786 4925304 . + 0 ID=cds-WP_011408878.1;Parent=gene-LLC55_RS23130;Dbxref=Genbank:WP_011408878.1;Name=WP_011408878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994930.1;locus_tag=LLC55_RS23130;product=hypothetical protein;protein_id=WP_011408878.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4925429 4925752 . - . ID=gene-LLC55_RS23135;Name=LLC55_RS23135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23135;old_locus_tag=LLC55_23155 NZ_CP086200.1 Protein Homology CDS 4925429 4925752 . - 0 ID=cds-WP_011259490.1;Parent=gene-LLC55_RS23135;Dbxref=Genbank:WP_011259490.1;Name=WP_011259490.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994928.1;locus_tag=LLC55_RS23135;product=ferredoxin family protein;protein_id=WP_011259490.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4925835 4926713 . - . ID=gene-LLC55_RS23140;Name=LLC55_RS23140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23140;old_locus_tag=LLC55_23160 NZ_CP086200.1 Protein Homology CDS 4925835 4926713 . - 0 ID=cds-WP_011408877.1;Parent=gene-LLC55_RS23140;Dbxref=Genbank:WP_011408877.1;Name=WP_011408877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167121.1;locus_tag=LLC55_RS23140;product=2-dehydro-3-deoxygalactonokinase;protein_id=WP_011408877.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4926710 4927621 . - . ID=gene-LLC55_RS23145;Name=LLC55_RS23145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23145;old_locus_tag=LLC55_23165 NZ_CP086200.1 Protein Homology CDS 4926710 4927621 . - 0 ID=cds-WP_011408876.1;Parent=gene-LLC55_RS23145;Dbxref=Genbank:WP_011408876.1;Name=WP_011408876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155129.1;locus_tag=LLC55_RS23145;product=SMP-30/gluconolactonase/LRE family protein;protein_id=WP_011408876.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4927615 4928763 . - . ID=gene-LLC55_RS23150;Name=dgoD;gbkey=Gene;gene=dgoD;gene_biotype=protein_coding;locus_tag=LLC55_RS23150;old_locus_tag=LLC55_23170 NZ_CP086200.1 Protein Homology CDS 4927615 4928763 . - 0 ID=cds-WP_011408875.1;Parent=gene-LLC55_RS23150;Dbxref=Genbank:WP_011408875.1;Name=WP_011408875.1;Ontology_term=GO:0009063,GO:0008869;gbkey=CDS;gene=dgoD;go_function=galactonate dehydratase activity|0008869||IEA;go_process=amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020077623.1;locus_tag=LLC55_RS23150;product=galactonate dehydratase;protein_id=WP_011408875.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4928760 4929392 . - . ID=gene-LLC55_RS23155;Name=LLC55_RS23155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23155;old_locus_tag=LLC55_23175 NZ_CP086200.1 Protein Homology CDS 4928760 4929392 . - 0 ID=cds-WP_011259487.1;Parent=gene-LLC55_RS23155;Dbxref=Genbank:WP_011259487.1;Name=WP_011259487.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452718.1;locus_tag=LLC55_RS23155;product=2-dehydro-3-deoxy-6-phosphogalactonate aldolase;protein_id=WP_011259487.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4929805 4930776 . + . ID=gene-LLC55_RS23160;Name=LLC55_RS23160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23160;old_locus_tag=LLC55_23180 NZ_CP086200.1 Protein Homology CDS 4929805 4930776 . + 0 ID=cds-WP_011408874.1;Parent=gene-LLC55_RS23160;Dbxref=Genbank:WP_011408874.1;Name=WP_011408874.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365771.1;locus_tag=LLC55_RS23160;product=LysR family transcriptional regulator;protein_id=WP_011408874.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4930974 4931324 . - . ID=gene-LLC55_RS23165;Name=LLC55_RS23165;end_range=4931324,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23165;old_locus_tag=LLC55_23185;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4930974 4931324 . - 0 ID=cds-LLC55_RS23165;Parent=gene-LLC55_RS23165;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4931324,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156675.1;locus_tag=LLC55_RS23165;partial=true;product=relaxation protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4931578 4934481 . + . ID=gene-LLC55_RS23170;Name=LLC55_RS23170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23170;old_locus_tag=LLC55_23190 NZ_CP086200.1 Protein Homology CDS 4931578 4934481 . + 0 ID=cds-WP_011259484.1;Parent=gene-LLC55_RS23170;Dbxref=Genbank:WP_011259484.1;Name=WP_011259484.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114815.1;locus_tag=LLC55_RS23170;product=DUF5110 domain-containing protein;protein_id=WP_011259484.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4934573 4935702 . + . ID=gene-LLC55_RS23175;Name=LLC55_RS23175;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23175;old_locus_tag=LLC55_23195;pseudo=true NZ_CP086200.1 Protein Homology CDS 4934573 4935702 . + 0 ID=cds-LLC55_RS23175;Parent=gene-LLC55_RS23175;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924393.1;locus_tag=LLC55_RS23175;product=glycoside hydrolase family 95 protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4935699 4937192 . + . ID=gene-LLC55_RS23180;Name=xylB;gbkey=Gene;gene=xylB;gene_biotype=protein_coding;locus_tag=LLC55_RS23180;old_locus_tag=LLC55_23200 NZ_CP086200.1 Protein Homology CDS 4935699 4937192 . + 0 ID=cds-WP_011408872.1;Parent=gene-LLC55_RS23180;Dbxref=Genbank:WP_011408872.1;Name=WP_011408872.1;Ontology_term=GO:0005997,GO:0042732,GO:0004856,GO:0005515;gbkey=CDS;gene=xylB;go_function=xylulokinase activity|0004856||IEA,protein binding|0005515||IEA;go_process=xylulose metabolic process|0005997||IEA,D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010343898.1;locus_tag=LLC55_RS23180;product=xylulokinase;protein_id=WP_011408872.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4937240 4938577 . + . ID=gene-LLC55_RS23185;Name=xylA;gbkey=Gene;gene=xylA;gene_biotype=protein_coding;locus_tag=LLC55_RS23185;old_locus_tag=LLC55_23205 NZ_CP086200.1 Protein Homology CDS 4937240 4938577 . + 0 ID=cds-WP_011259480.1-2;Parent=gene-LLC55_RS23185;Dbxref=Genbank:WP_011259480.1;Name=WP_011259480.1;Ontology_term=GO:0006098,GO:0042732,GO:0000287,GO:0009045;gbkey=CDS;gene=xylA;go_function=magnesium ion binding|0000287||IEA,xylose isomerase activity|0009045||IEA;go_process=pentose-phosphate shunt|0006098||IEA,D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171248.1;locus_tag=LLC55_RS23185;product=xylose isomerase;protein_id=WP_011259480.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4938662 4940089 . + . ID=gene-LLC55_RS23190;Name=LLC55_RS23190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23190;old_locus_tag=LLC55_23210 NZ_CP086200.1 Protein Homology CDS 4938662 4940089 . + 0 ID=cds-WP_011408871.1;Parent=gene-LLC55_RS23190;Dbxref=Genbank:WP_011408871.1;Name=WP_011408871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371361.1;locus_tag=LLC55_RS23190;product=sugar porter family MFS transporter;protein_id=WP_011408871.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4940037 4940997 . - . ID=gene-LLC55_RS23195;Name=LLC55_RS23195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23195;old_locus_tag=LLC55_23215;pseudo=true NZ_CP086200.1 Protein Homology CDS 4940037 4940997 . - 0 ID=cds-LLC55_RS23195;Parent=gene-LLC55_RS23195;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444577.1;locus_tag=LLC55_RS23195;product=IS30 family transposase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4941099 4941443 . + . ID=gene-LLC55_RS23200;Name=LLC55_RS23200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23200;old_locus_tag=LLC55_23220 NZ_CP086200.1 Protein Homology CDS 4941099 4941443 . + 0 ID=cds-WP_011408868.1;Parent=gene-LLC55_RS23200;Dbxref=Genbank:WP_011408868.1;Name=WP_011408868.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444578.1;locus_tag=LLC55_RS23200;product=hypothetical protein;protein_id=WP_011408868.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4941872 4942258 . - . ID=gene-LLC55_RS23205;Name=LLC55_RS23205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23205;old_locus_tag=LLC55_23225;pseudo=true NZ_CP086200.1 Protein Homology CDS 4941872 4942258 . - 0 ID=cds-LLC55_RS23205;Parent=gene-LLC55_RS23205;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155301.1;locus_tag=LLC55_RS23205;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4942258 4942824 . - . ID=gene-LLC55_RS23210;Name=yeiP;gbkey=Gene;gene=yeiP;gene_biotype=protein_coding;locus_tag=LLC55_RS23210;old_locus_tag=LLC55_23230 NZ_CP086200.1 Protein Homology CDS 4942258 4942824 . - 0 ID=cds-WP_011259476.1;Parent=gene-LLC55_RS23210;Dbxref=Genbank:WP_011259476.1;Name=WP_011259476.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=yeiP;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009603592.1;locus_tag=LLC55_RS23210;product=elongation factor P-like protein YeiP;protein_id=WP_011259476.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4942946 4943716 . - . ID=gene-LLC55_RS23215;Name=LLC55_RS23215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23215;old_locus_tag=LLC55_23235 NZ_CP086200.1 Protein Homology CDS 4942946 4943716 . - 0 ID=cds-WP_011259475.1;Parent=gene-LLC55_RS23215;Dbxref=Genbank:WP_011259475.1;Name=WP_011259475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486257.1;locus_tag=LLC55_RS23215;product=SDR family oxidoreductase;protein_id=WP_011259475.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4943855 4944751 . - . ID=gene-LLC55_RS23220;Name=LLC55_RS23220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23220;old_locus_tag=LLC55_23240 NZ_CP086200.1 Protein Homology CDS 4943855 4944751 . - 0 ID=cds-WP_011408867.1;Parent=gene-LLC55_RS23220;Dbxref=Genbank:WP_011408867.1;Name=WP_011408867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503194.1;locus_tag=LLC55_RS23220;product=hydroxymethylglutaryl-CoA lyase;protein_id=WP_011408867.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4944822 4945211 . - . ID=gene-LLC55_RS23225;Name=LLC55_RS23225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23225;old_locus_tag=LLC55_23245 NZ_CP086200.1 Protein Homology CDS 4944822 4945211 . - 0 ID=cds-WP_011259473.1;Parent=gene-LLC55_RS23225;Dbxref=Genbank:WP_011259473.1;Name=WP_011259473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367129.1;locus_tag=LLC55_RS23225;product=VOC family protein;protein_id=WP_011259473.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4945208 4946005 . - . ID=gene-LLC55_RS23230;Name=LLC55_RS23230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23230;old_locus_tag=LLC55_23250 NZ_CP086200.1 Protein Homology CDS 4945208 4946005 . - 0 ID=cds-WP_011259472.1;Parent=gene-LLC55_RS23230;Dbxref=Genbank:WP_011259472.1;Name=WP_011259472.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503195.1;locus_tag=LLC55_RS23230;product=enoyl-CoA hydratase-related protein;protein_id=WP_011259472.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4946120 4946368 . + . ID=gene-LLC55_RS23235;Name=LLC55_RS23235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23235;old_locus_tag=LLC55_23255 NZ_CP086200.1 Protein Homology CDS 4946120 4946368 . + 0 ID=cds-WP_011408865.1;Parent=gene-LLC55_RS23235;Dbxref=Genbank:WP_011408865.1;Name=WP_011408865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486267.1;locus_tag=LLC55_RS23235;product=FeoA family protein;protein_id=WP_011408865.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4946365 4948224 . + . ID=gene-LLC55_RS23240;Name=LLC55_RS23240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23240;old_locus_tag=LLC55_23260 NZ_CP086200.1 Protein Homology CDS 4946365 4948224 . + 0 ID=cds-WP_011408864.1;Parent=gene-LLC55_RS23240;Dbxref=Genbank:WP_011408864.1;Name=WP_011408864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164088.1;locus_tag=LLC55_RS23240;product=ferrous iron transporter B;protein_id=WP_011408864.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4948226 4948480 . + . ID=gene-LLC55_RS23245;Name=LLC55_RS23245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23245;old_locus_tag=LLC55_23265 NZ_CP086200.1 Protein Homology CDS 4948226 4948480 . + 0 ID=cds-WP_011259469.1;Parent=gene-LLC55_RS23245;Dbxref=Genbank:WP_011259469.1;Name=WP_011259469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051184.1;locus_tag=LLC55_RS23245;product=hypothetical protein;protein_id=WP_011259469.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4948540 4949028 . + . ID=gene-LLC55_RS23250;Name=LLC55_RS23250;end_range=4949028,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23250;old_locus_tag=LLC55_23270;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4948540 4949028 . + 0 ID=cds-LLC55_RS23250;Parent=gene-LLC55_RS23250;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4949028,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159457.1;locus_tag=LLC55_RS23250;partial=true;product=nuclear transport factor 2 family protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4949334 4950536 . + . ID=gene-LLC55_RS23255;Name=LLC55_RS23255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23255;old_locus_tag=LLC55_23275 NZ_CP086200.1 Protein Homology CDS 4949334 4950536 . + 0 ID=cds-WP_011259466.1;Parent=gene-LLC55_RS23255;Dbxref=Genbank:WP_011259466.1;Name=WP_011259466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259466.1;locus_tag=LLC55_RS23255;product=PLP-dependent aminotransferase family protein;protein_id=WP_011259466.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4950533 4951252 . + . ID=gene-LLC55_RS23260;Name=LLC55_RS23260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23260;old_locus_tag=LLC55_23280 NZ_CP086200.1 Protein Homology CDS 4950533 4951252 . + 0 ID=cds-WP_011259465.1;Parent=gene-LLC55_RS23260;Dbxref=Genbank:WP_011259465.1;Name=WP_011259465.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259465.1;locus_tag=LLC55_RS23260;product=MOSC domain-containing protein;protein_id=WP_011259465.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4951305 4952068 . + . ID=gene-LLC55_RS23265;Name=LLC55_RS23265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23265;old_locus_tag=LLC55_23285 NZ_CP086200.1 Protein Homology CDS 4951305 4951620 . + 0 ID=cds-WP_094187715.1-15;Parent=gene-LLC55_RS23265;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS23265;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 Protein Homology CDS 4951620 4952068 . + 2 ID=cds-WP_094187715.1-15;Parent=gene-LLC55_RS23265;Dbxref=Genbank:WP_094187715.1;Name=WP_094187715.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=LLC55_RS23265;product=IS5 family transposase;protein_id=WP_094187715.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4952478 4953194 . + . ID=gene-LLC55_RS23270;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;locus_tag=LLC55_RS23270;old_locus_tag=LLC55_23290 NZ_CP086200.1 Protein Homology CDS 4952478 4953194 . + 0 ID=cds-WP_011408860.1;Parent=gene-LLC55_RS23270;Dbxref=Genbank:WP_011408860.1;Name=WP_011408860.1;Ontology_term=GO:0009089,GO:0008839;gbkey=CDS;gene=dapB;go_function=4-hydroxy-tetrahydrodipicolinate reductase|0008839||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367114.1;locus_tag=LLC55_RS23270;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_011408860.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4953434 4954558 . + . ID=gene-LLC55_RS23275;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=LLC55_RS23275;old_locus_tag=LLC55_23295 NZ_CP086200.1 Protein Homology CDS 4953434 4954558 . + 0 ID=cds-WP_011259464.1;Parent=gene-LLC55_RS23275;Dbxref=Genbank:WP_011259464.1;Name=WP_011259464.1;Ontology_term=GO:0009220,GO:0004088,GO:0005951;gbkey=CDS;gene=carA;go_component=carbamoyl-phosphate synthase complex|0005951||IEA;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851215.1;locus_tag=LLC55_RS23275;product=glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit;protein_id=WP_011259464.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4954558 4955001 . + . ID=gene-LLC55_RS23280;Name=LLC55_RS23280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23280;old_locus_tag=LLC55_23300 NZ_CP086200.1 Protein Homology CDS 4954558 4955001 . + 0 ID=cds-WP_012444585.1;Parent=gene-LLC55_RS23280;Dbxref=Genbank:WP_012444585.1;Name=WP_012444585.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486285.1;locus_tag=LLC55_RS23280;product=hypothetical protein;protein_id=WP_012444585.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4955010 4958252 . + . ID=gene-LLC55_RS23285;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=LLC55_RS23285;old_locus_tag=LLC55_23305 NZ_CP086200.1 Protein Homology CDS 4955010 4958252 . + 0 ID=cds-WP_011259463.1;Parent=gene-LLC55_RS23285;Dbxref=Genbank:WP_011259463.1;Name=WP_011259463.1;Ontology_term=GO:0006807,GO:0005524,GO:0046872;gbkey=CDS;gene=carB;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806440.1;locus_tag=LLC55_RS23285;product=carbamoyl-phosphate synthase large subunit;protein_id=WP_011259463.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4958261 4958725 . + . ID=gene-LLC55_RS23290;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=LLC55_RS23290;old_locus_tag=LLC55_23310 NZ_CP086200.1 Protein Homology CDS 4958261 4958725 . + 0 ID=cds-WP_010367104.1;Parent=gene-LLC55_RS23290;Dbxref=Genbank:WP_010367104.1;Name=WP_010367104.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greA;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507602.1;locus_tag=LLC55_RS23290;product=transcription elongation factor GreA;protein_id=WP_010367104.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4958742 4959662 . + . ID=gene-LLC55_RS23295;Name=LLC55_RS23295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23295;old_locus_tag=LLC55_23315 NZ_CP086200.1 Protein Homology CDS 4958742 4959662 . + 0 ID=cds-WP_011259461.1;Parent=gene-LLC55_RS23295;Dbxref=Genbank:WP_011259461.1;Name=WP_011259461.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806444.1;locus_tag=LLC55_RS23295;product=hypothetical protein;protein_id=WP_011259461.1;transl_table=11 NZ_CP086200.1 RefSeq gene 4959659 4961398 . + . ID=gene-LLC55_RS23300;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=LLC55_RS23300;old_locus_tag=LLC55_23320 NZ_CP086200.1 Protein Homology CDS 4959659 4961398 . + 0 ID=cds-WP_069959909.1;Parent=gene-LLC55_RS23300;Dbxref=Genbank:WP_069959909.1;Name=WP_069959909.1;Ontology_term=GO:0006310,GO:0008297;gbkey=CDS;gene=recJ;go_function=single-stranded DNA exodeoxyribonuclease activity|0008297||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259460.1;locus_tag=LLC55_RS23300;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=WP_069959909.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4961427 4961639 . + . ID=gene-LLC55_RS23305;Name=LLC55_RS23305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23305;old_locus_tag=LLC55_23325;partial=true;pseudo=true;start_range=.,4961427 NZ_CP086200.1 Protein Homology CDS 4961427 4961639 . + 0 ID=cds-LLC55_RS23305;Parent=gene-LLC55_RS23305;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158821.1;locus_tag=LLC55_RS23305;partial=true;product=hypothetical protein;pseudo=true;start_range=.,4961427;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4961785 4962153 . + . ID=gene-LLC55_RS23310;Name=LLC55_RS23310;end_range=4962153,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23310;old_locus_tag=LLC55_23330;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4961785 4962153 . + 0 ID=cds-LLC55_RS23310;Parent=gene-LLC55_RS23310;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=4962153,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167297.1;locus_tag=LLC55_RS23310;partial=true;product=AAA family ATPase;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4962578 4962955 . + . ID=gene-LLC55_RS23315;Name=LLC55_RS23315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23315;old_locus_tag=LLC55_23335 NZ_CP086200.1 Protein Homology CDS 4962578 4962955 . + 0 ID=cds-WP_011408855.1;Parent=gene-LLC55_RS23315;Dbxref=Genbank:WP_011408855.1;Name=WP_011408855.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004666662.1;locus_tag=LLC55_RS23315;product=hypothetical protein;protein_id=WP_011408855.1;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4963116 4963364 . - . ID=gene-LLC55_RS23320;Name=LLC55_RS23320;end_range=4963364,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23320;old_locus_tag=LLC55_23340;partial=true;pseudo=true NZ_CP086200.1 Protein Homology CDS 4963116 4963364 . - 0 ID=cds-LLC55_RS23320;Parent=gene-LLC55_RS23320;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4963364,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1;locus_tag=LLC55_RS23320;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq pseudogene 4964370 4965332 . - . ID=gene-LLC55_RS23330;Name=LLC55_RS23330;gbkey=Gene;gene_biotype=pseudogene;locus_tag=LLC55_RS23330;old_locus_tag=LLC55_23350;pseudo=true NZ_CP086200.1 Protein Homology CDS 4964370 4965332 . - 0 ID=cds-LLC55_RS23330;Parent=gene-LLC55_RS23330;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378466.1;locus_tag=LLC55_RS23330;product=DUF1176 domain-containing protein;pseudo=true;transl_table=11 NZ_CP086200.1 RefSeq gene 4965215 4966465 . - . ID=gene-LLC55_RS23335;Name=LLC55_RS23335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=LLC55_RS23335;old_locus_tag=LLC55_23355 NZ_CP086200.1 Protein Homology CDS 4965215 4966465 . - 0 ID=cds-WP_044757387.1;Parent=gene-LLC55_RS23335;Dbxref=Genbank:WP_044757387.1;Name=WP_044757387.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155284.1;locus_tag=LLC55_RS23335;product=acyltransferase family protein;protein_id=WP_044757387.1;transl_table=11 ###