locus-tag class description BRM88_RS00005 PF00308 Bacterial dnaA protein BRM88_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix BRM88_RS00005 PF11638 DnaA N-terminal domain BRM88_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BRM88_RS00010 PF02767 DNA polymerase III beta subunit, central domain BRM88_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BRM88_RS00020 PF02463 RecF/RecN/SMC N terminal domain BRM88_RS00025 PF18053 DNA gyrase B subunit insert domain BRM88_RS00025 PF01751 Toprim domain BRM88_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus BRM88_RS00025 PF00204 DNA gyrase B BRM88_RS00035 PF01435 Peptidase family M48 BRM88_RS00045 PF03544 Gram-negative bacterial TonB protein C-terminal BRM88_RS00050 PF01618 MotA/TolQ/ExbB proton channel family BRM88_RS00055 PF02472 Biopolymer transport protein ExbD/TolR BRM88_RS00060 PF02472 Biopolymer transport protein ExbD/TolR BRM88_RS00065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BRM88_RS00075 PF13091 PLD-like domain BRM88_RS00075 PF13396 Phospholipase_D-nuclease N-terminal BRM88_RS00085 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BRM88_RS00090 PF00155 Aminotransferase class I and II BRM88_RS00095 PF00593 TonB dependent receptor BRM88_RS00095 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS00110 PF05598 Transposase domain (DUF772) BRM88_RS00110 PF01609 Transposase DDE domain BRM88_RS00115 PF01070 FMN-dependent dehydrogenase BRM88_RS00120 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BRM88_RS00135 PF07055 Enoyl reductase FAD binding domain BRM88_RS00135 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BRM88_RS00135 PF12241 Trans-2-enoyl-CoA reductase catalytic region BRM88_RS00145 PF00294 pfkB family carbohydrate kinase BRM88_RS00155 PF05598 Transposase domain (DUF772) BRM88_RS00155 PF01609 Transposase DDE domain BRM88_RS00160 PF00005 ABC transporter BRM88_RS00170 PF05598 Transposase domain (DUF772) BRM88_RS00210 PF05598 Transposase domain (DUF772) BRM88_RS00210 PF01609 Transposase DDE domain BRM88_RS00220 PF00271 Helicase conserved C-terminal domain BRM88_RS00220 PF00270 DEAD/DEAH box helicase BRM88_RS00235 PF06903 VirK protein BRM88_RS00325 PF03150 Di-haem cytochrome c peroxidase BRM88_RS00335 PF13460 NAD(P)H-binding BRM88_RS00340 PF00128 Alpha amylase, catalytic domain BRM88_RS00340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_RS00350 PF00128 Alpha amylase, catalytic domain BRM88_RS00355 PF02446 4-alpha-glucanotransferase BRM88_RS00360 PF00128 Alpha amylase, catalytic domain BRM88_RS00360 PF11941 Domain of unknown function (DUF3459) BRM88_RS00360 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_RS00365 PF00128 Alpha amylase, catalytic domain BRM88_RS00365 PF02806 Alpha amylase, C-terminal all-beta domain BRM88_RS00365 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_RS00370 PF08323 Starch synthase catalytic domain BRM88_RS00370 PF00534 Glycosyl transferases group 1 BRM88_RS00375 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS00380 PF02638 Glycosyl hydrolase-like 10 BRM88_RS00385 PF05661 Protein of unknown function (DUF808) BRM88_RS00395 PF03109 ABC1 family BRM88_RS00410 PF12795 Mechanosensitive ion channel porin domain BRM88_RS00410 PF00924 Mechanosensitive ion channel BRM88_RS00410 PF12794 Mechanosensitive ion channel inner membrane domain 1 BRM88_RS00435 PF01464 Transglycosylase SLT domain BRM88_RS00445 PF03958 Bacterial type II/III secretion system short domain BRM88_RS00445 PF00263 Bacterial type II and III secretion system protein BRM88_RS00450 PF01311 Bacterial export proteins, family 1 BRM88_RS00460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_RS00460 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRM88_RS00460 PF18269 T3SS EscN ATPase C-terminal domain BRM88_RS00475 PF01514 Secretory protein of YscJ/FliF family BRM88_RS00490 PF01312 FlhB HrpN YscU SpaS Family BRM88_RS00495 PF00771 FHIPEP family BRM88_RS00510 PF00813 FliP family BRM88_RS00515 PF01313 Bacterial export proteins, family 3 BRM88_RS00570 PF01609 Transposase DDE domain BRM88_RS00570 PF05598 Transposase domain (DUF772) BRM88_RS00580 PF01609 Transposase DDE domain BRM88_RS00580 PF05598 Transposase domain (DUF772) BRM88_RS00585 PF05819 NolX protein BRM88_RS00615 PF00595 PDZ domain BRM88_RS00625 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS00625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS00625 PF08521 Two-component sensor kinase N-terminal BRM88_RS00635 PF08338 Domain of unknown function (DUF1731) BRM88_RS00635 PF01370 NAD dependent epimerase/dehydratase family BRM88_RS00645 PF01609 Transposase DDE domain BRM88_RS00645 PF05598 Transposase domain (DUF772) BRM88_RS00670 PF00665 Integrase core domain BRM88_RS00670 PF13936 Helix-turn-helix domain BRM88_RS00690 PF13344 Haloacid dehalogenase-like hydrolase BRM88_RS00690 PF00293 NUDIX domain BRM88_RS00725 PF13533 Biotin-lipoyl like BRM88_RS00735 PF00005 ABC transporter BRM88_RS00760 PF08845 Toxin SymE, type I toxin-antitoxin system BRM88_RS00780 PF03006 Haemolysin-III related BRM88_RS00785 PF09369 Domain of unknown function (DUF1998) BRM88_RS00785 PF00271 Helicase conserved C-terminal domain BRM88_RS00785 PF00270 DEAD/DEAH box helicase BRM88_RS00845 PF01645 Conserved region in glutamate synthase BRM88_RS00845 PF04898 Glutamate synthase central domain BRM88_RS00845 PF00310 Glutamine amidotransferases class-II BRM88_RS00845 PF01493 GXGXG motif BRM88_RS00850 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BRM88_RS00850 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_RS00890 PF05598 Transposase domain (DUF772) BRM88_RS00900 PF00356 Bacterial regulatory proteins, lacI family BRM88_RS00930 PF02806 Alpha amylase, C-terminal all-beta domain BRM88_RS00930 PF00128 Alpha amylase, catalytic domain BRM88_RS00930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_RS00935 PF16657 Maltogenic Amylase, C-terminal domain BRM88_RS00935 PF00128 Alpha amylase, catalytic domain BRM88_RS00940 PF11896 Domain of unknown function (DUF3416) BRM88_RS00940 PF00128 Alpha amylase, catalytic domain BRM88_RS00995 PF01078 Magnesium chelatase, subunit ChlI BRM88_RS00995 PF13335 Magnesium chelatase, subunit ChlI C-terminal BRM88_RS01000 PF04380 Membrane fusogenic activity BRM88_RS01005 PF00543 Nitrogen regulatory protein P-II BRM88_RS01040 PF17284 Spermidine synthase tetramerisation domain BRM88_RS01045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BRM88_RS01045 PF17810 Arginine decarboxylase helical bundle domain BRM88_RS01045 PF17944 Arginine decarboxylase C-terminal helical extension BRM88_RS01050 PF05598 Transposase domain (DUF772) BRM88_RS01100 PF13932 GidA associated domain BRM88_RS01100 PF01134 Glucose inhibited division protein A BRM88_RS01115 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_RS01135 PF13649 Methyltransferase domain BRM88_RS01145 PF12697 Alpha/beta hydrolase family BRM88_RS01165 PF04349 Periplasmic glucan biosynthesis protein, MdoG BRM88_RS01175 PF00265 Thymidine kinase BRM88_RS01180 PF00580 UvrD/REP helicase N-terminal domain BRM88_RS01180 PF13361 UvrD-like helicase C-terminal domain BRM88_RS01195 PF04337 Protein of unknown function, DUF480 BRM88_RS01200 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BRM88_RS01205 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BRM88_RS01210 PF04820 Tryptophan halogenase BRM88_RS01225 PF00356 Bacterial regulatory proteins, lacI family BRM88_RS01240 PF01553 Acyltransferase BRM88_RS01270 PF00657 GDSL-like Lipase/Acylhydrolase BRM88_RS01285 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BRM88_RS01290 PF01037 Lrp/AsnC ligand binding domain BRM88_RS01340 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_RS01340 PF00107 Zinc-binding dehydrogenase BRM88_RS01350 PF00150 Cellulase (glycosyl hydrolase family 5) BRM88_RS01360 PF00150 Cellulase (glycosyl hydrolase family 5) BRM88_RS01370 PF00150 Cellulase (glycosyl hydrolase family 5) BRM88_RS01380 PF02810 SEC-C motif BRM88_RS01395 PF05598 Transposase domain (DUF772) BRM88_RS01395 PF01609 Transposase DDE domain BRM88_RS01400 PF01263 Aldose 1-epimerase BRM88_RS01405 PF07690 Major Facilitator Superfamily BRM88_RS01410 PF01126 Heme oxygenase BRM88_RS01415 PF00360 Phytochrome region BRM88_RS01415 PF13426 PAS domain BRM88_RS01415 PF08446 PAS fold BRM88_RS01415 PF01590 GAF domain BRM88_RS01465 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BRM88_RS01465 PF06827 Zinc finger found in FPG and IleRS BRM88_RS01465 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BRM88_RS01490 PF04333 MlaA lipoprotein BRM88_RS01500 PF05494 MlaC protein BRM88_RS01505 PF02470 MlaD protein BRM88_RS01510 PF02405 Permease MlaE BRM88_RS01515 PF00005 ABC transporter BRM88_RS01590 PF13570 PQQ-like domain BRM88_RS01590 PF01011 PQQ enzyme repeat BRM88_RS01590 PF13360 PQQ-like domain BRM88_RS01615 PF06165 Glycosyltransferase family 36 BRM88_RS01615 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BRM88_RS01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS01630 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS01635 PF02659 Putative manganese efflux pump BRM88_RS01640 PF01614 Bacterial transcriptional regulator BRM88_RS01640 PF09339 IclR helix-turn-helix domain BRM88_RS01645 PF07690 Major Facilitator Superfamily BRM88_RS01650 PF05336 L-rhamnose mutarotase BRM88_RS01680 PF01432 Peptidase family M3 BRM88_RS01700 PF00472 RF-1 domain BRM88_RS01710 PF00849 RNA pseudouridylate synthase BRM88_RS01720 PF03109 ABC1 family BRM88_RS01735 PF01820 D-ala D-ala ligase N-terminus BRM88_RS01735 PF07478 D-ala D-ala ligase C-terminus BRM88_RS01820 PF02558 Ketopantoate reductase PanE/ApbA BRM88_RS01820 PF08546 Ketopantoate reductase PanE/ApbA C terminal BRM88_RS01830 PF01061 ABC-2 type transporter BRM88_RS01835 PF00005 ABC transporter BRM88_RS01840 PF00175 Oxidoreductase NAD-binding domain BRM88_RS01840 PF01383 CpcD/allophycocyanin linker domain BRM88_RS01845 PF01545 Cation efflux family BRM88_RS01850 PF02583 Metal-sensitive transcriptional repressor BRM88_RS01860 PF01381 Helix-turn-helix BRM88_RS01870 PF00005 ABC transporter BRM88_RS01885 PF04820 Tryptophan halogenase BRM88_RS01910 PF02798 Glutathione S-transferase, N-terminal domain BRM88_RS01910 PF00043 Glutathione S-transferase, C-terminal domain BRM88_RS01920 PF00326 Prolyl oligopeptidase family BRM88_RS01920 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BRM88_RS01945 PF00490 Delta-aminolevulinic acid dehydratase BRM88_RS01960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS01960 PF03466 LysR substrate binding domain BRM88_RS01970 PF00667 FAD binding domain BRM88_RS01970 PF00258 Flavodoxin BRM88_RS01970 PF00175 Oxidoreductase NAD-binding domain BRM88_RS01985 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BRM88_RS01985 PF08501 Shikimate dehydrogenase substrate binding domain BRM88_RS01985 PF01488 Shikimate / quinate 5-dehydrogenase BRM88_RS01995 PF06733 DEAD_2 BRM88_RS01995 PF13307 Helicase C-terminal domain BRM88_RS02015 PF13533 Biotin-lipoyl like BRM88_RS02020 PF06628 Catalase-related immune-responsive BRM88_RS02020 PF00199 Catalase BRM88_RS02045 PF01207 Dihydrouridine synthase (Dus) BRM88_RS02055 PF00072 Response regulator receiver domain BRM88_RS02055 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS02085 PF08279 HTH domain BRM88_RS02085 PF03099 Biotin/lipoate A/B protein ligase family BRM88_RS02085 PF02237 Biotin protein ligase C terminal domain BRM88_RS02090 PF03309 Type III pantothenate kinase BRM88_RS02105 PF02223 Thymidylate kinase BRM88_RS02130 PF00491 Arginase family BRM88_RS02145 PF05532 CsbD-like BRM88_RS02150 PF00579 tRNA synthetases class I (W and Y) BRM88_RS02155 PF00753 Metallo-beta-lactamase superfamily BRM88_RS02185 PF00892 EamA-like transporter family BRM88_RS02205 PF00199 Catalase BRM88_RS02210 PF04542 Sigma-70 region 2 BRM88_RS02210 PF08281 Sigma-70, region 4 BRM88_RS02220 PF00883 Cytosol aminopeptidase family, catalytic domain BRM88_RS02220 PF02789 Cytosol aminopeptidase family, N-terminal domain BRM88_RS02230 PF01594 AI-2E family transporter BRM88_RS02245 PF01040 UbiA prenyltransferase family BRM88_RS02255 PF06968 Biotin and Thiamin Synthesis associated domain BRM88_RS02255 PF04055 Radical SAM superfamily BRM88_RS02260 PF00155 Aminotransferase class I and II BRM88_RS02290 PF00535 Glycosyl transferase family 2 BRM88_RS02300 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM88_RS02300 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM88_RS02305 PF05166 YcgL domain BRM88_RS02320 PF00723 Glycosyl hydrolases family 15 BRM88_RS02325 PF00723 Glycosyl hydrolases family 15 BRM88_RS02330 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BRM88_RS02330 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BRM88_RS02345 PF02254 TrkA-N domain BRM88_RS02345 PF00999 Sodium/hydrogen exchanger family BRM88_RS02350 PF00571 CBS domain BRM88_RS02350 PF01769 Divalent cation transporter BRM88_RS02350 PF03448 MgtE intracellular N domain BRM88_RS02360 PF13380 CoA binding domain BRM88_RS02360 PF00583 Acetyltransferase (GNAT) family BRM88_RS02360 PF13607 Succinyl-CoA ligase like flavodoxin domain BRM88_RS02370 PF03477 ATP cone domain BRM88_RS02370 PF02867 Ribonucleotide reductase, barrel domain BRM88_RS02370 PF00317 Ribonucleotide reductase, all-alpha domain BRM88_RS02380 PF00268 Ribonucleotide reductase, small chain BRM88_RS02410 PF02803 Thiolase, C-terminal domain BRM88_RS02410 PF00108 Thiolase, N-terminal domain BRM88_RS02415 PF00775 Dioxygenase BRM88_RS02415 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BRM88_RS02430 PF00206 Lyase BRM88_RS02430 PF10397 Adenylosuccinate lyase C-terminus BRM88_RS02435 PF12146 Serine aminopeptidase, S33 BRM88_RS02440 PF02627 Carboxymuconolactone decarboxylase family BRM88_RS02465 PF00106 short chain dehydrogenase BRM88_RS02480 PF03485 Arginyl tRNA synthetase N terminal domain BRM88_RS02480 PF05746 DALR anticodon binding domain BRM88_RS02480 PF00750 tRNA synthetases class I (R) BRM88_RS02485 PF04002 RadC-like JAB domain BRM88_RS02490 PF04127 DNA / pantothenate metabolism flavoprotein BRM88_RS02490 PF02441 Flavoprotein BRM88_RS02495 PF00692 dUTPase BRM88_RS02500 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRM88_RS02500 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRM88_RS02500 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRM88_RS02500 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRM88_RS02515 PF00535 Glycosyl transferase family 2 BRM88_RS02520 PF01370 NAD dependent epimerase/dehydratase family BRM88_RS02530 PF02195 ParB-like nuclease domain BRM88_RS02530 PF17762 HTH domain found in ParB protein BRM88_RS02535 PF13614 AAA domain BRM88_RS02545 PF00156 Phosphoribosyl transferase domain BRM88_RS02550 PF03372 Endonuclease/Exonuclease/phosphatase family BRM88_RS02555 PF07690 Major Facilitator Superfamily BRM88_RS02565 PF03702 Anhydro-N-acetylmuramic acid kinase BRM88_RS02570 PF01551 Peptidase family M23 BRM88_RS02570 PF04225 Opacity-associated protein A LysM-like domain BRM88_RS02575 PF00579 tRNA synthetases class I (W and Y) BRM88_RS02615 PF00072 Response regulator receiver domain BRM88_RS02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS02615 PF00672 HAMP domain BRM88_RS02615 PF01627 Hpt domain BRM88_RS02615 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRM88_RS02615 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS02620 PF00072 Response regulator receiver domain BRM88_RS02620 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS02645 PF01521 Iron-sulphur cluster biosynthesis BRM88_RS02655 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BRM88_RS02655 PF09297 NADH pyrophosphatase zinc ribbon domain BRM88_RS02655 PF00293 NUDIX domain BRM88_RS02660 PF03186 CobD/Cbib protein BRM88_RS02660 PF17113 Regulatory signalling modulator protein AmpE BRM88_RS02685 PF07690 Major Facilitator Superfamily BRM88_RS02700 PF12805 FUSC-like inner membrane protein yccS BRM88_RS02710 PF00005 ABC transporter BRM88_RS02710 PF12704 MacB-like periplasmic core domain BRM88_RS02710 PF02687 FtsX-like permease family BRM88_RS02715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BRM88_RS02715 PF02843 Phosphoribosylglycinamide synthetase, C domain BRM88_RS02715 PF02844 Phosphoribosylglycinamide synthetase, N domain BRM88_RS02725 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system BRM88_RS02730 PF01808 AICARFT/IMPCHase bienzyme BRM88_RS02730 PF02142 MGS-like domain BRM88_RS02740 PF12147 Putative methyltransferase BRM88_RS02740 PF12146 Serine aminopeptidase, S33 BRM88_RS02750 PF12147 Putative methyltransferase BRM88_RS02750 PF12146 Serine aminopeptidase, S33 BRM88_RS02755 PF00782 Dual specificity phosphatase, catalytic domain BRM88_RS02770 PF02954 Bacterial regulatory protein, Fis family BRM88_RS02785 PF01381 Helix-turn-helix BRM88_RS02830 PF02785 Biotin carboxylase C-terminal domain BRM88_RS02830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRM88_RS02830 PF00289 Biotin carboxylase, N-terminal domain BRM88_RS02840 PF00364 Biotin-requiring enzyme BRM88_RS02845 PF01220 Dehydroquinase class II BRM88_RS02860 PF11412 Disulphide bond corrector protein DsbC BRM88_RS02860 PF02683 Cytochrome C biogenesis protein transmembrane region BRM88_RS02865 PF03091 CutA1 divalent ion tolerance protein BRM88_RS02900 PF18074 Primosomal protein N C-terminal domain BRM88_RS02900 PF17764 3′ DNA-binding domain (3′BD) BRM88_RS02900 PF00271 Helicase conserved C-terminal domain BRM88_RS02900 PF00270 DEAD/DEAH box helicase BRM88_RS02900 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BRM88_RS02925 PF01554 MatE BRM88_RS02930 PF01343 Peptidase family S49 BRM88_RS02955 PF01300 Telomere recombination BRM88_RS02960 PF13368 Topoisomerase C-terminal repeat BRM88_RS02960 PF01751 Toprim domain BRM88_RS02960 PF01131 DNA topoisomerase BRM88_RS02975 PF04361 Protein of unknown function (DUF494) BRM88_RS02980 PF17782 DprA winged helix domain BRM88_RS02980 PF02481 DNA recombination-mediator protein A BRM88_RS02985 PF01476 LysM domain BRM88_RS02990 PF01327 Polypeptide deformylase BRM88_RS02995 PF00551 Formyl transferase BRM88_RS02995 PF02911 Formyl transferase, C-terminal domain BRM88_RS03000 PF01189 16S rRNA methyltransferase RsmB/F BRM88_RS03000 PF01029 NusB family BRM88_RS03015 PF00535 Glycosyl transferase family 2 BRM88_RS03035 PF00925 GTP cyclohydrolase II BRM88_RS03050 PF03279 Bacterial lipid A biosynthesis acyltransferase BRM88_RS03055 PF02580 D-Tyr-tRNA(Tyr) deacylase BRM88_RS03060 PF04539 Sigma-70 region 3 BRM88_RS03060 PF04545 Sigma-70, region 4 BRM88_RS03060 PF04546 Sigma-70, non-essential region BRM88_RS03060 PF03979 Sigma-70 factor, region 1.1 BRM88_RS03060 PF00140 Sigma-70 factor, region 1.2 BRM88_RS03060 PF04542 Sigma-70 region 2 BRM88_RS03145 PF00005 ABC transporter BRM88_RS03160 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS03160 PF00593 TonB dependent receptor BRM88_RS03215 PF02322 Cytochrome bd terminal oxidase subunit II BRM88_RS03220 PF01654 Cytochrome bd terminal oxidase subunit I BRM88_RS03235 PF00072 Response regulator receiver domain BRM88_RS03235 PF02954 Bacterial regulatory protein, Fis family BRM88_RS03235 PF00158 Sigma-54 interaction domain BRM88_RS03265 PF06580 Histidine kinase BRM88_RS03265 PF00672 HAMP domain BRM88_RS03265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS03265 PF02743 Cache domain BRM88_RS03280 PF13520 Amino acid permease BRM88_RS03300 PF01431 Peptidase family M13 BRM88_RS03300 PF05649 Peptidase family M13 BRM88_RS03315 PF00248 Aldo/keto reductase family BRM88_RS03320 PF03358 NADPH-dependent FMN reductase BRM88_RS03330 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BRM88_RS03340 PF03167 Uracil DNA glycosylase superfamily BRM88_RS03350 PF02469 Fasciclin domain BRM88_RS03365 PF00999 Sodium/hydrogen exchanger family BRM88_RS03370 PF00005 ABC transporter BRM88_RS03375 PF01061 ABC-2 type transporter BRM88_RS03390 PF00082 Subtilase family BRM88_RS03390 PF04151 Bacterial pre-peptidase C-terminal domain BRM88_RS03400 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS03400 PF00072 Response regulator receiver domain BRM88_RS03400 PF08448 PAS fold BRM88_RS03400 PF13188 PAS domain BRM88_RS03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS03405 PF00072 Response regulator receiver domain BRM88_RS03405 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS03425 PF00691 OmpA family BRM88_RS03425 PF13677 Membrane MotB of proton-channel complex MotA/MotB BRM88_RS03430 PF01618 MotA/TolQ/ExbB proton channel family BRM88_RS03440 PF01641 SelR domain BRM88_RS03450 PF01037 Lrp/AsnC ligand binding domain BRM88_RS03455 PF01266 FAD dependent oxidoreductase BRM88_RS03460 PF00842 Alanine racemase, C-terminal domain BRM88_RS03460 PF01168 Alanine racemase, N-terminal domain BRM88_RS03480 PF00989 PAS fold BRM88_RS03480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS03480 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS03495 PF07995 Glucose / Sorbosone dehydrogenase BRM88_RS03515 PF05175 Methyltransferase small domain BRM88_RS03515 PF08468 Methyltransferase small domain N-terminal BRM88_RS03520 PF00849 RNA pseudouridylate synthase BRM88_RS03520 PF01479 S4 domain BRM88_RS03525 PF13419 Haloacid dehalogenase-like hydrolase BRM88_RS03555 PF04461 Protein of unknown function (DUF520) BRM88_RS03560 PF00892 EamA-like transporter family BRM88_RS03565 PF09383 NIL domain BRM88_RS03565 PF00005 ABC transporter BRM88_RS03570 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS03575 PF03180 NLPA lipoprotein BRM88_RS03600 PF00364 Biotin-requiring enzyme BRM88_RS03600 PF02817 e3 binding domain BRM88_RS03600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BRM88_RS03610 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_RS03610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BRM88_RS03630 PF00119 ATP synthase A chain BRM88_RS03635 PF00137 ATP synthase subunit C BRM88_RS03640 PF00430 ATP synthase B/B' CF(0) BRM88_RS03645 PF00213 ATP synthase delta (OSCP) subunit BRM88_RS03650 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRM88_RS03650 PF00306 ATP synthase alpha/beta chain, C terminal domain BRM88_RS03650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_RS03655 PF00231 ATP synthase BRM88_RS03660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_RS03660 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRM88_RS03665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BRM88_RS03670 PF01817 Chorismate mutase type II BRM88_RS03685 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_RS03685 PF14602 Hexapeptide repeat of succinyl-transferase BRM88_RS03685 PF12804 MobA-like NTP transferase domain BRM88_RS03720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_RS03725 PF01380 SIS domain BRM88_RS03755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRM88_RS03760 PF05275 Copper resistance protein B precursor (CopB) BRM88_RS03765 PF00394 Multicopper oxidase BRM88_RS03765 PF07731 Multicopper oxidase BRM88_RS03765 PF07732 Multicopper oxidase BRM88_RS03780 PF01432 Peptidase family M3 BRM88_RS03790 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM88_RS03790 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM88_RS03795 PF07977 FabA-like domain BRM88_RS03805 PF11799 impB/mucB/samB family C-terminal domain BRM88_RS03805 PF00817 impB/mucB/samB family BRM88_RS03810 PF13419 Haloacid dehalogenase-like hydrolase BRM88_RS03820 PF13185 GAF domain BRM88_RS03835 PF01242 6-pyruvoyl tetrahydropterin synthase BRM88_RS03845 PF00271 Helicase conserved C-terminal domain BRM88_RS03845 PF00270 DEAD/DEAH box helicase BRM88_RS03860 PF13417 Glutathione S-transferase, N-terminal domain BRM88_RS03865 PF00437 Type II/IV secretion system protein BRM88_RS03885 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_RS03885 PF00571 CBS domain BRM88_RS03890 PF01053 Cys/Met metabolism PLP-dependent enzyme BRM88_RS03900 PF01370 NAD dependent epimerase/dehydratase family BRM88_RS03940 PF00872 Transposase, Mutator family BRM88_RS03950 PF00005 ABC transporter BRM88_RS03960 PF00766 Electron transfer flavoprotein FAD-binding domain BRM88_RS03960 PF01012 Electron transfer flavoprotein domain BRM88_RS03965 PF01012 Electron transfer flavoprotein domain BRM88_RS03970 PF16363 GDP-mannose 4,6 dehydratase BRM88_RS03975 PF00483 Nucleotidyl transferase BRM88_RS03980 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BRM88_RS03985 PF04321 RmlD substrate binding domain BRM88_RS03990 PF01050 Mannose-6-phosphate isomerase BRM88_RS03990 PF00483 Nucleotidyl transferase BRM88_RS03995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRM88_RS03995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRM88_RS03995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRM88_RS03995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRM88_RS04000 PF01144 Coenzyme A transferase BRM88_RS04005 PF01144 Coenzyme A transferase BRM88_RS04010 PF05045 Rhamnan synthesis protein F BRM88_RS04010 PF14307 Glycosyltransferase WbsX BRM88_RS04035 PF03886 ABC-type transport auxiliary lipoprotein component BRM88_RS04035 PF02470 MlaD protein BRM88_RS04040 PF00005 ABC transporter BRM88_RS04045 PF02405 Permease MlaE BRM88_RS04055 PF00816 H-NS histone family BRM88_RS04060 PF04073 Aminoacyl-tRNA editing domain BRM88_RS04060 PF03129 Anticodon binding domain BRM88_RS04060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRM88_RS04070 PF01066 CDP-alcohol phosphatidyltransferase BRM88_RS04100 PF01609 Transposase DDE domain BRM88_RS04100 PF05598 Transposase domain (DUF772) BRM88_RS04115 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BRM88_RS04115 PF01464 Transglycosylase SLT domain BRM88_RS04120 PF00544 Pectate lyase BRM88_RS04170 PF00133 tRNA synthetases class I (I, L, M and V) BRM88_RS04170 PF08264 Anticodon-binding domain of tRNA BRM88_RS04170 PF10458 Valyl tRNA synthetase tRNA binding arm BRM88_RS04185 PF02789 Cytosol aminopeptidase family, N-terminal domain BRM88_RS04185 PF00883 Cytosol aminopeptidase family, catalytic domain BRM88_RS04195 PF03739 Lipopolysaccharide export system permease LptF/LptG BRM88_RS04210 PF02899 Phage integrase, N-terminal SAM-like domain BRM88_RS04210 PF00589 Phage integrase family BRM88_RS04215 PF13098 Thioredoxin-like domain BRM88_RS04215 PF10411 Disulfide bond isomerase protein N-terminus BRM88_RS04220 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BRM88_RS04220 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BRM88_RS04220 PF02769 AIR synthase related protein, C-terminal domain BRM88_RS04230 PF05658 Head domain of trimeric autotransporter adhesin BRM88_RS04230 PF05662 Coiled stalk of trimeric autotransporter adhesin BRM88_RS04230 PF13018 Extended Signal Peptide of Type V secretion system BRM88_RS04230 PF03895 YadA-like membrane anchor domain BRM88_RS04250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRM88_RS04250 PF00437 Type II/IV secretion system protein BRM88_RS04260 PF00482 Type II secretion system (T2SS), protein F BRM88_RS04265 PF08334 Type II secretion system (T2SS), protein G BRM88_RS04270 PF12019 Type II transport protein GspH BRM88_RS04275 PF07963 Prokaryotic N-terminal methylation motif BRM88_RS04285 PF03934 Type II secretion system (T2SS), protein K BRM88_RS04290 PF05137 Fimbrial assembly protein (PilN) BRM88_RS04295 PF10741 Type II secretion system (T2SS), protein M subtype b BRM88_RS04305 PF03958 Bacterial type II/III secretion system short domain BRM88_RS04305 PF00263 Bacterial type II and III secretion system protein BRM88_RS04320 PF00392 Bacterial regulatory proteins, gntR family BRM88_RS04320 PF07702 UTRA domain BRM88_RS04335 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS04335 PF00593 TonB dependent receptor BRM88_RS04375 PF09827 CRISPR associated protein Cas2 BRM88_RS04380 PF01867 CRISPR associated protein Cas1 BRM88_RS04400 PF09704 CRISPR-associated protein (Cas_Cas5) BRM88_RS04420 PF02545 Maf-like protein BRM88_RS04425 PF02620 Large ribosomal RNA subunit accumulation protein YceD BRM88_RS04430 PF01783 Ribosomal L32p protein family BRM88_RS04435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRM88_RS04435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRM88_RS04445 PF00698 Acyl transferase domain BRM88_RS04455 PF00550 Phosphopantetheine attachment site BRM88_RS04460 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM88_RS04460 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM88_RS04465 PF00425 chorismate binding enzyme BRM88_RS04465 PF04715 Anthranilate synthase component I, N terminal region BRM88_RS04470 PF02618 YceG-like family BRM88_RS04475 PF09115 DNA polymerase III, delta subunit, C terminal BRM88_RS04505 PF02954 Bacterial regulatory protein, Fis family BRM88_RS04505 PF06506 Propionate catabolism activator BRM88_RS04505 PF00158 Sigma-54 interaction domain BRM88_RS04515 PF00285 Citrate synthase, C-terminal domain BRM88_RS04520 PF00330 Aconitase family (aconitate hydratase) BRM88_RS04520 PF00694 Aconitase C-terminal domain BRM88_RS04535 PF04303 PrpF protein BRM88_RS04540 PF05598 Transposase domain (DUF772) BRM88_RS04540 PF01609 Transposase DDE domain BRM88_RS04545 PF00593 TonB dependent receptor BRM88_RS04545 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS04600 PF00665 Integrase core domain BRM88_RS04600 PF13936 Helix-turn-helix domain BRM88_RS04610 PF08534 Redoxin BRM88_RS04620 PF01556 DnaJ C terminal domain BRM88_RS04620 PF00226 DnaJ domain BRM88_RS04625 PF00072 Response regulator receiver domain BRM88_RS04630 PF01145 SPFH domain / Band 7 family BRM88_RS04630 PF12221 Bacterial membrane protein N terminal BRM88_RS04635 PF01145 SPFH domain / Band 7 family BRM88_RS04645 PF00709 Adenylosuccinate synthetase BRM88_RS04650 PF01433 Peptidase family M1 domain BRM88_RS04650 PF11838 ERAP1-like C-terminal domain BRM88_RS04660 PF05598 Transposase domain (DUF772) BRM88_RS04700 PF03279 Bacterial lipid A biosynthesis acyltransferase BRM88_RS04705 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BRM88_RS04710 PF02321 Outer membrane efflux protein BRM88_RS04735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS04740 PF00330 Aconitase family (aconitate hydratase) BRM88_RS04745 PF00694 Aconitase C-terminal domain BRM88_RS04755 PF00180 Isocitrate/isopropylmalate dehydrogenase BRM88_RS04760 PF08502 LeuA allosteric (dimerisation) domain BRM88_RS04760 PF00682 HMGL-like BRM88_RS04765 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_RS04775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BRM88_RS04775 PF00205 Thiamine pyrophosphate enzyme, central domain BRM88_RS04775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BRM88_RS04780 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BRM88_RS04780 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BRM88_RS04790 PF01964 Radical SAM ThiC family BRM88_RS04790 PF13667 ThiC-associated domain BRM88_RS04795 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS04795 PF18500 CadC C-terminal domain 1 BRM88_RS04800 PF12833 Helix-turn-helix domain BRM88_RS04805 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS04805 PF00593 TonB dependent receptor BRM88_RS04820 PF00719 Inorganic pyrophosphatase BRM88_RS04840 PF03030 Inorganic H+ pyrophosphatase BRM88_RS04860 PF00365 Phosphofructokinase BRM88_RS04870 PF01225 Mur ligase family, catalytic domain BRM88_RS04870 PF02875 Mur ligase family, glutamate ligase domain BRM88_RS04870 PF08245 Mur ligase middle domain BRM88_RS04880 PF01062 Bestrophin, RFP-TM, chloride channel BRM88_RS04900 PF02798 Glutathione S-transferase, N-terminal domain BRM88_RS04900 PF00043 Glutathione S-transferase, C-terminal domain BRM88_RS04905 PF00056 lactate/malate dehydrogenase, NAD binding domain BRM88_RS04905 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BRM88_RS04910 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BRM88_RS04915 PF03144 Elongation factor Tu domain 2 BRM88_RS04915 PF00679 Elongation factor G C-terminus BRM88_RS04915 PF00009 Elongation factor Tu GTP binding domain BRM88_RS04935 PF01474 Class-II DAHP synthetase family BRM88_RS04945 PF02600 Disulfide bond formation protein DsbB BRM88_RS05070 PF01609 Transposase DDE domain BRM88_RS05070 PF05598 Transposase domain (DUF772) BRM88_RS05095 PF03009 Glycerophosphoryl diester phosphodiesterase family BRM88_RS05120 PF00180 Isocitrate/isopropylmalate dehydrogenase BRM88_RS05120 PF18324 Hypothetical protein TT1725 BRM88_RS05175 PF05698 Bacterial trigger factor protein (TF) C-terminus BRM88_RS05175 PF05697 Bacterial trigger factor protein (TF) BRM88_RS05180 PF00574 Clp protease BRM88_RS05185 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_RS05185 PF07724 AAA domain (Cdc48 subfamily) BRM88_RS05185 PF06689 ClpX C4-type zinc finger BRM88_RS05190 PF05362 Lon protease (S16) C-terminal proteolytic domain BRM88_RS05190 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_RS05190 PF02190 ATP-dependent protease La (LON) substrate-binding domain BRM88_RS05195 PF00216 Bacterial DNA-binding protein BRM88_RS05220 PF05257 CHAP domain BRM88_RS05220 PF01476 LysM domain BRM88_RS05225 PF16123 Hydroxyacylglutathione hydrolase C-terminus BRM88_RS05225 PF00753 Metallo-beta-lactamase superfamily BRM88_RS05235 PF00075 RNase H BRM88_RS05240 PF00929 Exonuclease BRM88_RS05275 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS05275 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BRM88_RS05275 PF13296 Putative type VI secretion system Rhs element Vgr BRM88_RS05335 PF00589 Phage integrase family BRM88_RS05335 PF13356 Arm DNA-binding domain BRM88_RS05345 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BRM88_RS05355 PF00753 Metallo-beta-lactamase superfamily BRM88_RS05355 PF12706 Beta-lactamase superfamily domain BRM88_RS05360 PF04055 Radical SAM superfamily BRM88_RS05360 PF06463 Molybdenum Cofactor Synthesis C BRM88_RS05370 PF01967 MoaC family BRM88_RS05375 PF02597 ThiS family BRM88_RS05380 PF02391 MoaE protein BRM88_RS05395 PF12170 DNA polymerase III tau subunit V interacting with alpha BRM88_RS05395 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BRM88_RS05395 PF12169 DNA polymerase III subunits gamma and tau domain III BRM88_RS05400 PF02575 YbaB/EbfC DNA-binding family BRM88_RS05405 PF13662 Toprim domain BRM88_RS05405 PF02132 RecR protein BRM88_RS05410 PF01230 HIT domain BRM88_RS05420 PF11992 Domain of unknown function (DUF3488) BRM88_RS05420 PF01841 Transglutaminase-like superfamily BRM88_RS05420 PF13559 Domain of unknown function (DUF4129) BRM88_RS05430 PF17863 AAA lid domain BRM88_RS05430 PF07726 ATPase family associated with various cellular activities (AAA) BRM88_RS05450 PF01327 Polypeptide deformylase BRM88_RS05500 PF05598 Transposase domain (DUF772) BRM88_RS05500 PF01609 Transposase DDE domain BRM88_RS05530 PF00462 Glutaredoxin BRM88_RS05535 PF01522 Polysaccharide deacetylase BRM88_RS05555 PF00155 Aminotransferase class I and II BRM88_RS05560 PF03193 RsgA GTPase BRM88_RS05575 PF00128 Alpha amylase, catalytic domain BRM88_RS05595 PF00356 Bacterial regulatory proteins, lacI family BRM88_RS05600 PF00106 short chain dehydrogenase BRM88_RS05605 PF03600 Citrate transporter BRM88_RS05620 PF00072 Response regulator receiver domain BRM88_RS05620 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS05625 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS05625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS05625 PF08521 Two-component sensor kinase N-terminal BRM88_RS05635 PF00196 Bacterial regulatory proteins, luxR family BRM88_RS05635 PF00072 Response regulator receiver domain BRM88_RS05655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS05655 PF03466 LysR substrate binding domain BRM88_RS05665 PF07690 Major Facilitator Superfamily BRM88_RS05670 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS05685 PF00375 Sodium:dicarboxylate symporter family BRM88_RS05690 PF00390 Malic enzyme, N-terminal domain BRM88_RS05690 PF03949 Malic enzyme, NAD binding domain BRM88_RS05690 PF01515 Phosphate acetyl/butaryl transferase BRM88_RS05725 PF02581 Thiamine monophosphate synthase BRM88_RS05730 PF00301 Rubredoxin BRM88_RS05735 PF13369 Transglutaminase-like superfamily BRM88_RS05745 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BRM88_RS05755 PF01812 5-formyltetrahydrofolate cyclo-ligase family BRM88_RS05765 PF05164 Cell division protein ZapA BRM88_RS05775 PF03695 Uncharacterised protein family (UPF0149) BRM88_RS05780 PF05195 Aminopeptidase P, N-terminal domain BRM88_RS05780 PF00557 Metallopeptidase family M24 BRM88_RS05800 PF00557 Metallopeptidase family M24 BRM88_RS05815 PF04055 Radical SAM superfamily BRM88_RS05815 PF06969 HemN C-terminal domain BRM88_RS05820 PF01725 Ham1 family BRM88_RS05830 PF03725 3' exoribonuclease family, domain 2 BRM88_RS05830 PF01138 3' exoribonuclease family, domain 1 BRM88_RS05835 PF03755 YicC-like family, N-terminal region BRM88_RS05835 PF08340 Domain of unknown function (DUF1732) BRM88_RS05840 PF00625 Guanylate kinase BRM88_RS05855 PF01192 RNA polymerase Rpb6 BRM88_RS05860 PF13291 ACT domain BRM88_RS05860 PF04607 Region found in RelA / SpoT proteins BRM88_RS05860 PF02824 TGS domain BRM88_RS05865 PF01042 Endoribonuclease L-PSP BRM88_RS05870 PF00270 DEAD/DEAH box helicase BRM88_RS05870 PF00271 Helicase conserved C-terminal domain BRM88_RS05870 PF17191 RecG wedge domain BRM88_RS05875 PF01156 Inosine-uridine preferring nucleoside hydrolase BRM88_RS05880 PF01197 Ribosomal protein L31 BRM88_RS05885 PF00285 Citrate synthase, C-terminal domain BRM88_RS05895 PF00912 Transglycosylase BRM88_RS05895 PF00905 Penicillin binding protein transpeptidase domain BRM88_RS05895 PF17092 Penicillin-binding protein OB-like domain BRM88_RS05900 PF11104 Type IV pilus assembly protein PilM; BRM88_RS05905 PF05137 Fimbrial assembly protein (PilN) BRM88_RS05910 PF04350 Pilus assembly protein, PilO BRM88_RS05915 PF04351 Pilus assembly protein, PilP BRM88_RS05920 PF11741 AMIN domain BRM88_RS05920 PF00263 Bacterial type II and III secretion system protein BRM88_RS05920 PF03958 Bacterial type II/III secretion system short domain BRM88_RS05920 PF07660 Secretin and TonB N terminus short domain BRM88_RS05945 PF07726 ATPase family associated with various cellular activities (AAA) BRM88_RS05945 PF17863 AAA lid domain BRM88_RS05965 PF07584 Aerotolerance regulator N-terminal BRM88_RS05965 PF00092 von Willebrand factor type A domain BRM88_RS05985 PF00375 Sodium:dicarboxylate symporter family BRM88_RS05990 PF02779 Transketolase, pyrimidine binding domain BRM88_RS05990 PF02780 Transketolase, C-terminal domain BRM88_RS05990 PF00456 Transketolase, thiamine diphosphate binding domain BRM88_RS06000 PF04225 Opacity-associated protein A LysM-like domain BRM88_RS06000 PF01551 Peptidase family M23 BRM88_RS06005 PF01476 LysM domain BRM88_RS06005 PF03734 L,D-transpeptidase catalytic domain BRM88_RS06030 PF00501 AMP-binding enzyme BRM88_RS06050 PF00072 Response regulator receiver domain BRM88_RS06050 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS06055 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS06055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS06055 PF08521 Two-component sensor kinase N-terminal BRM88_RS06075 PF00005 ABC transporter BRM88_RS06075 PF03459 TOBE domain BRM88_RS06080 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS06090 PF04273 Putative phosphatase (DUF442) BRM88_RS06090 PF00753 Metallo-beta-lactamase superfamily BRM88_RS06125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BRM88_RS06125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BRM88_RS06145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS06145 PF00672 HAMP domain BRM88_RS06145 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS06150 PF00072 Response regulator receiver domain BRM88_RS06150 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS06160 PF08443 RimK-like ATP-grasp domain BRM88_RS06160 PF18030 RimK PreATP-grasp domain BRM88_RS06200 PF00520 Ion transport protein BRM88_RS06200 PF00027 Cyclic nucleotide-binding domain BRM88_RS06205 PF00202 Aminotransferase class-III BRM88_RS06220 PF01593 Flavin containing amine oxidoreductase BRM88_RS06225 PF00034 Cytochrome c BRM88_RS06225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BRM88_RS06240 PF00127 Copper binding proteins, plastocyanin/azurin family BRM88_RS06250 PF00202 Aminotransferase class-III BRM88_RS06270 PF13276 HTH-like domain BRM88_RS06270 PF00665 Integrase core domain BRM88_RS06270 PF13333 Integrase core domain BRM88_RS06280 PF03377 TAL effector repeat BRM88_RS06300 PF03377 TAL effector repeat BRM88_RS06320 PF03377 TAL effector repeat BRM88_RS06335 PF03377 TAL effector repeat BRM88_RS06355 PF01208 Uroporphyrinogen decarboxylase (URO-D) BRM88_RS06365 PF01761 3-dehydroquinate synthase BRM88_RS06370 PF01202 Shikimate kinase BRM88_RS06375 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BRM88_RS06375 PF01243 Pyridoxamine 5'-phosphate oxidase BRM88_RS06385 PF04012 PspA/IM30 family BRM88_RS06410 PF03738 Glutathionylspermidine synthase preATP-grasp BRM88_RS06425 PF09278 MerR, DNA binding BRM88_RS06425 PF00376 MerR family regulatory protein BRM88_RS06455 PF04820 Tryptophan halogenase BRM88_RS06460 PF12706 Beta-lactamase superfamily domain BRM88_RS06480 PF00324 Amino acid permease BRM88_RS06485 PF00196 Bacterial regulatory proteins, luxR family BRM88_RS06490 PF00561 alpha/beta hydrolase fold BRM88_RS06500 PF00324 Amino acid permease BRM88_RS06520 PF01654 Cytochrome bd terminal oxidase subunit I BRM88_RS06525 PF02322 Cytochrome bd terminal oxidase subunit II BRM88_RS06530 PF00756 Putative esterase BRM88_RS06535 PF01769 Divalent cation transporter BRM88_RS06535 PF03448 MgtE intracellular N domain BRM88_RS06535 PF00571 CBS domain BRM88_RS06545 PF02896 PEP-utilising enzyme, TIM barrel domain BRM88_RS06545 PF05524 PEP-utilising enzyme, N-terminal BRM88_RS06545 PF00391 PEP-utilising enzyme, mobile domain BRM88_RS06550 PF00381 PTS HPr component phosphorylation site BRM88_RS06560 PF03668 P-loop ATPase protein family BRM88_RS06565 PF07475 HPr Serine kinase C-terminal domain BRM88_RS06565 PF02603 HPr Serine kinase N terminus BRM88_RS06570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BRM88_RS06575 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BRM88_RS06580 PF04552 Sigma-54, DNA binding domain BRM88_RS06580 PF04963 Sigma-54 factor, core binding domain BRM88_RS06580 PF00309 Sigma-54 factor, Activator interacting domain (AID) BRM88_RS06585 PF00005 ABC transporter BRM88_RS06590 PF03968 OstA-like protein BRM88_RS06605 PF00571 CBS domain BRM88_RS06605 PF01380 SIS domain BRM88_RS06610 PF01722 BolA-like protein BRM88_RS06620 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BRM88_RS06640 PF00551 Formyl transferase BRM88_RS06655 PF02769 AIR synthase related protein, C-terminal domain BRM88_RS06655 PF00586 AIR synthase related protein, N-terminal domain BRM88_RS06665 PF01594 AI-2E family transporter BRM88_RS06670 PF00308 Bacterial dnaA protein BRM88_RS06675 PF00483 Nucleotidyl transferase BRM88_RS06680 PF01636 Phosphotransferase enzyme family BRM88_RS06695 PF07687 Peptidase dimerisation domain BRM88_RS06695 PF01546 Peptidase family M20/M25/M40 BRM88_RS06735 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BRM88_RS06740 PF01263 Aldose 1-epimerase BRM88_RS06745 PF01578 Cytochrome C assembly protein BRM88_RS06755 PF00448 SRP54-type protein, GTPase domain BRM88_RS06755 PF02978 Signal peptide binding domain BRM88_RS06755 PF02881 SRP54-type protein, helical bundle domain BRM88_RS06770 PF03060 Nitronate monooxygenase BRM88_RS06780 PF00886 Ribosomal protein S16 BRM88_RS06785 PF05239 PRC-barrel domain BRM88_RS06785 PF01782 RimM N-terminal domain BRM88_RS06790 PF01746 tRNA (Guanine-1)-methyltransferase BRM88_RS06795 PF01245 Ribosomal protein L19 BRM88_RS06805 PF01554 MatE BRM88_RS06810 PF01479 S4 domain BRM88_RS06840 PF01541 GIY-YIG catalytic domain BRM88_RS06845 PF07724 AAA domain (Cdc48 subfamily) BRM88_RS06845 PF17871 AAA lid domain BRM88_RS06845 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_RS06845 PF02861 Clp amino terminal domain, pathogenicity island component BRM88_RS06845 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_RS06885 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS06885 PF00593 TonB dependent receptor BRM88_RS06910 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BRM88_RS06910 PF12557 Cob(I)alamin adenosyltransferase N terminal BRM88_RS06920 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BRM88_RS06925 PF02277 Phosphoribosyltransferase BRM88_RS06935 PF02654 Cobalamin-5-phosphate synthase BRM88_RS06945 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BRM88_RS06945 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BRM88_RS06950 PF06276 Ferric iron reductase FhuF-like transporter BRM88_RS06950 PF04183 IucA / IucC family BRM88_RS06955 PF07690 Major Facilitator Superfamily BRM88_RS06960 PF04183 IucA / IucC family BRM88_RS06960 PF06276 Ferric iron reductase FhuF-like transporter BRM88_RS06970 PF00593 TonB dependent receptor BRM88_RS06970 PF07660 Secretin and TonB N terminus short domain BRM88_RS06970 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS06985 PF02254 TrkA-N domain BRM88_RS06985 PF00999 Sodium/hydrogen exchanger family BRM88_RS06995 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS06995 PF00593 TonB dependent receptor BRM88_RS07000 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS07000 PF00593 TonB dependent receptor BRM88_RS07015 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS07015 PF00593 TonB dependent receptor BRM88_RS07020 PF12848 ABC transporter BRM88_RS07020 PF00005 ABC transporter BRM88_RS07035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS07035 PF03466 LysR substrate binding domain BRM88_RS07045 PF13472 GDSL-like Lipase/Acylhydrolase family BRM88_RS07045 PF07859 alpha/beta hydrolase fold BRM88_RS07065 PF12833 Helix-turn-helix domain BRM88_RS07070 PF00183 Hsp90 protein BRM88_RS07070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS07100 PF00872 Transposase, Mutator family BRM88_RS07105 PF00120 Glutamine synthetase, catalytic domain BRM88_RS07110 PF04204 Homoserine O-succinyltransferase BRM88_RS07115 PF01810 LysE type translocator BRM88_RS07120 PF07722 Peptidase C26 BRM88_RS07130 PF01053 Cys/Met metabolism PLP-dependent enzyme BRM88_RS07135 PF00266 Aminotransferase class-V BRM88_RS07165 PF00355 Rieske [2Fe-2S] domain BRM88_RS07180 PF00266 Aminotransferase class-V BRM88_RS07185 PF01458 Uncharacterized protein family (UPF0051) BRM88_RS07190 PF00005 ABC transporter BRM88_RS07195 PF01458 Uncharacterized protein family (UPF0051) BRM88_RS07200 PF02082 Transcriptional regulator BRM88_RS07220 PF01965 DJ-1/PfpI family BRM88_RS07255 PF05598 Transposase domain (DUF772) BRM88_RS07255 PF01609 Transposase DDE domain BRM88_RS07270 PF03807 NADP oxidoreductase coenzyme F420-dependent BRM88_RS07270 PF14748 Pyrroline-5-carboxylate reductase dimerisation BRM88_RS07275 PF01168 Alanine racemase, N-terminal domain BRM88_RS07280 PF00437 Type II/IV secretion system protein BRM88_RS07285 PF00437 Type II/IV secretion system protein BRM88_RS07310 PF13673 Acetyltransferase (GNAT) domain BRM88_RS07310 PF00958 GMP synthase C terminal domain BRM88_RS07310 PF00117 Glutamine amidotransferase class-I BRM88_RS07310 PF03352 Methyladenine glycosylase BRM88_RS07310 PF13302 Acetyltransferase (GNAT) domain BRM88_RS07320 PF02622 Uncharacterized ACR, COG1678 BRM88_RS07325 PF03652 Holliday junction resolvase BRM88_RS07330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BRM88_RS07330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BRM88_RS07340 PF02566 OsmC-like protein BRM88_RS07350 PF02567 Phenazine biosynthesis-like protein BRM88_RS07360 PF00696 Amino acid kinase family BRM88_RS07360 PF01842 ACT domain BRM88_RS07375 PF08245 Mur ligase middle domain BRM88_RS07390 PF00348 Polyprenyl synthetase BRM88_RS07395 PF00436 Single-strand binding protein family BRM88_RS07400 PF00563 EAL domain BRM88_RS07400 PF01590 GAF domain BRM88_RS07400 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS07400 PF00360 Phytochrome region BRM88_RS07440 PF04328 Selenoprotein, putative BRM88_RS07445 PF02554 Carbon starvation protein CstA BRM88_RS07445 PF13722 5TM C-terminal transporter carbon starvation CstA BRM88_RS07450 PF02678 Pirin BRM88_RS07450 PF05726 Pirin C-terminal cupin domain BRM88_RS07460 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS07480 PF01609 Transposase DDE domain BRM88_RS07480 PF05598 Transposase domain (DUF772) BRM88_RS07490 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS07490 PF13296 Putative type VI secretion system Rhs element Vgr BRM88_RS07490 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BRM88_RS07525 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BRM88_RS07525 PF13296 Putative type VI secretion system Rhs element Vgr BRM88_RS07525 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS07580 PF05726 Pirin C-terminal cupin domain BRM88_RS07580 PF02678 Pirin BRM88_RS07590 PF04493 Endonuclease V BRM88_RS07595 PF00300 Histidine phosphatase superfamily (branch 1) BRM88_RS07610 PF01431 Peptidase family M13 BRM88_RS07610 PF05649 Peptidase family M13 BRM88_RS07620 PF00072 Response regulator receiver domain BRM88_RS07620 PF01339 CheB methylesterase BRM88_RS07625 PF03705 CheR methyltransferase, all-alpha domain BRM88_RS07625 PF01739 CheR methyltransferase, SAM binding domain BRM88_RS07630 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS07630 PF13426 PAS domain BRM88_RS07630 PF00563 EAL domain BRM88_RS07635 PF01584 CheW-like domain BRM88_RS07640 PF02203 Tar ligand binding domain homologue BRM88_RS07640 PF00672 HAMP domain BRM88_RS07640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS07645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS07645 PF02895 Signal transducing histidine kinase, homodimeric domain BRM88_RS07645 PF01627 Hpt domain BRM88_RS07645 PF09078 CheY binding BRM88_RS07645 PF01584 CheW-like domain BRM88_RS07655 PF00271 Helicase conserved C-terminal domain BRM88_RS07655 PF00270 DEAD/DEAH box helicase BRM88_RS07655 PF02559 CarD-like/TRCF domain BRM88_RS07655 PF17757 UvrB interaction domain BRM88_RS07655 PF03461 TRCF domain BRM88_RS07665 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BRM88_RS07685 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS07685 PF00672 HAMP domain BRM88_RS07685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS07710 PF05598 Transposase domain (DUF772) BRM88_RS07710 PF01609 Transposase DDE domain BRM88_RS07735 PF05598 Transposase domain (DUF772) BRM88_RS07735 PF01609 Transposase DDE domain BRM88_RS07770 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRM88_RS07775 PF01475 Ferric uptake regulator family BRM88_RS07820 PF00313 'Cold-shock' DNA-binding domain BRM88_RS07835 PF00899 ThiF family BRM88_RS07840 PF01026 TatD related DNase BRM88_RS07855 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_RS07855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_RS07855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_RS07865 PF13417 Glutathione S-transferase, N-terminal domain BRM88_RS07870 PF00733 Asparagine synthase BRM88_RS07870 PF13537 Glutamine amidotransferase domain BRM88_RS07875 PF03358 NADPH-dependent FMN reductase BRM88_RS07880 PF00772 DnaB-like helicase N terminal domain BRM88_RS07880 PF03796 DnaB-like helicase C terminal domain BRM88_RS07885 PF03441 FAD binding domain of DNA photolyase BRM88_RS07885 PF00875 DNA photolyase BRM88_RS07900 PF00691 OmpA family BRM88_RS07900 PF05736 OprF membrane domain BRM88_RS07935 PF00107 Zinc-binding dehydrogenase BRM88_RS07935 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_RS07940 PF00654 Voltage gated chloride channel BRM88_RS07950 PF05598 Transposase domain (DUF772) BRM88_RS07950 PF01609 Transposase DDE domain BRM88_RS07955 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BRM88_RS07955 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BRM88_RS07960 PF06029 AlkA N-terminal domain BRM88_RS07960 PF12833 Helix-turn-helix domain BRM88_RS07960 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM88_RS07960 PF02805 Metal binding domain of Ada BRM88_RS08005 PF00270 DEAD/DEAH box helicase BRM88_RS08005 PF00271 Helicase conserved C-terminal domain BRM88_RS08005 PF03880 DbpA RNA binding domain BRM88_RS08010 PF00563 EAL domain BRM88_RS08010 PF08448 PAS fold BRM88_RS08010 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS08015 PF00849 RNA pseudouridylate synthase BRM88_RS08015 PF01479 S4 domain BRM88_RS08040 PF03737 Aldolase/RraA BRM88_RS08045 PF00144 Beta-lactamase BRM88_RS08050 PF00999 Sodium/hydrogen exchanger family BRM88_RS08055 PF00672 HAMP domain BRM88_RS08055 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS08055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS08060 PF00072 Response regulator receiver domain BRM88_RS08060 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS08065 PF02321 Outer membrane efflux protein BRM88_RS08080 PF00873 AcrB/AcrD/AcrF family BRM88_RS08090 PF00664 ABC transporter transmembrane region BRM88_RS08090 PF00005 ABC transporter BRM88_RS08115 PF01609 Transposase DDE domain BRM88_RS08115 PF05598 Transposase domain (DUF772) BRM88_RS08130 PF01609 Transposase DDE domain BRM88_RS08130 PF05598 Transposase domain (DUF772) BRM88_RS08170 PF01121 Dephospho-CoA kinase BRM88_RS08175 PF01478 Type IV leader peptidase family BRM88_RS08175 PF06750 Bacterial Peptidase A24 N-terminal domain BRM88_RS08180 PF00482 Type II secretion system (T2SS), protein F BRM88_RS08185 PF00114 Pilin (bacterial filament) BRM88_RS08185 PF07963 Prokaryotic N-terminal methylation motif BRM88_RS08190 PF08019 Phosphoethanolamine transferase EptA/EptB BRM88_RS08190 PF00884 Sulfatase BRM88_RS08205 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRM88_RS08205 PF00437 Type II/IV secretion system protein BRM88_RS08220 PF00158 Sigma-54 interaction domain BRM88_RS08220 PF02954 Bacterial regulatory protein, Fis family BRM88_RS08220 PF00072 Response regulator receiver domain BRM88_RS08225 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS08225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS08230 PF08442 ATP-grasp domain BRM88_RS08230 PF00549 CoA-ligase BRM88_RS08235 PF02629 CoA binding domain BRM88_RS08235 PF00549 CoA-ligase BRM88_RS08250 PF00795 Carbon-nitrogen hydrolase BRM88_RS08250 PF02540 NAD synthase BRM88_RS08255 PF13525 Outer membrane lipoprotein BRM88_RS08260 PF00849 RNA pseudouridylate synthase BRM88_RS08265 PF02578 Multi-copper polyphenol oxidoreductase laccase BRM88_RS08280 PF00982 Glycosyltransferase family 20 BRM88_RS08285 PF00723 Glycosyl hydrolases family 15 BRM88_RS08290 PF02358 Trehalose-phosphatase BRM88_RS08300 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS08300 PF00593 TonB dependent receptor BRM88_RS08330 PF04377 Arginine-tRNA-protein transferase, C terminus BRM88_RS08330 PF04376 Arginine-tRNA-protein transferase, N terminus BRM88_RS08350 PF08281 Sigma-70, region 4 BRM88_RS08350 PF04542 Sigma-70 region 2 BRM88_RS08365 PF00378 Enoyl-CoA hydratase/isomerase BRM88_RS08380 PF17760 UvrA interaction domain BRM88_RS08380 PF00005 ABC transporter BRM88_RS08380 PF17755 UvrA DNA-binding domain BRM88_RS08385 PF00829 Ribosomal prokaryotic L21 protein BRM88_RS08390 PF01016 Ribosomal L27 protein BRM88_RS08395 PF01018 GTP1/OBG BRM88_RS08395 PF01926 50S ribosome-binding GTPase BRM88_RS08400 PF01649 Ribosomal protein S20 BRM88_RS08405 PF03023 Lipid II flippase MurJ BRM88_RS08410 PF06574 FAD synthetase BRM88_RS08410 PF01687 Riboflavin kinase BRM88_RS08415 PF06827 Zinc finger found in FPG and IleRS BRM88_RS08415 PF00133 tRNA synthetases class I (I, L, M and V) BRM88_RS08415 PF08264 Anticodon-binding domain of tRNA BRM88_RS08420 PF01252 Signal peptidase (SPase) II BRM88_RS08425 PF02401 LytB protein BRM88_RS08435 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BRM88_RS08435 PF06481 COX Aromatic Rich Motif BRM88_RS08440 PF00115 Cytochrome C and Quinol oxidase polypeptide I BRM88_RS08445 PF00510 Cytochrome c oxidase subunit III BRM88_RS08450 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BRM88_RS08460 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS08460 PF06715 Gp5 C-terminal repeat (3 copies) BRM88_RS08470 PF03527 RHS protein BRM88_RS08470 PF14220 Domain of unknown function (DUF4329) BRM88_RS08470 PF05593 RHS Repeat BRM88_RS08470 PF05593 RHS Repeat BRM88_RS08470 PF03527 RHS protein BRM88_RS08470 PF14220 Domain of unknown function (DUF4329) BRM88_RS08500 PF05192 MutS domain III BRM88_RS08500 PF01624 MutS domain I BRM88_RS08500 PF05190 MutS family domain IV BRM88_RS08500 PF05188 MutS domain II BRM88_RS08500 PF00488 MutS domain V BRM88_RS08525 PF18073 Rubredoxin metal binding domain BRM88_RS08565 PF02938 GAD domain BRM88_RS08565 PF00152 tRNA synthetases class II (D, K and N) BRM88_RS08565 PF01336 OB-fold nucleic acid binding domain BRM88_RS08580 PF01709 Transcriptional regulator BRM88_RS08585 PF02075 Crossover junction endodeoxyribonuclease RuvC BRM88_RS08590 PF01330 RuvA N terminal domain BRM88_RS08590 PF07499 RuvA, C-terminal domain BRM88_RS08595 PF02705 K+ potassium transporter BRM88_RS08600 PF05496 Holliday junction DNA helicase RuvB P-loop domain BRM88_RS08600 PF17864 RuvB AAA lid domain BRM88_RS08600 PF05491 RuvB C-terminal winged helix domain BRM88_RS08605 PF03061 Thioesterase superfamily BRM88_RS08610 PF01618 MotA/TolQ/ExbB proton channel family BRM88_RS08615 PF02472 Biopolymer transport protein ExbD/TolR BRM88_RS08625 PF07676 WD40-like Beta Propeller Repeat BRM88_RS08625 PF04052 TolB amino-terminal domain BRM88_RS08630 PF00691 OmpA family BRM88_RS08640 PF04055 Radical SAM superfamily BRM88_RS08650 PF00849 RNA pseudouridylate synthase BRM88_RS08650 PF01479 S4 domain BRM88_RS08670 PF01810 LysE type translocator BRM88_RS08700 PF05598 Transposase domain (DUF772) BRM88_RS08710 PF06508 Queuosine biosynthesis protein QueC BRM88_RS08880 PF00182 Chitinase class I BRM88_RS08935 PF01555 DNA methylase BRM88_RS08965 PF13438 Domain of unknown function (DUF4113) BRM88_RS08965 PF11798 IMS family HHH motif BRM88_RS08965 PF11799 impB/mucB/samB family C-terminal domain BRM88_RS08965 PF00817 impB/mucB/samB family BRM88_RS08995 PF16124 RecQ zinc-binding BRM88_RS08995 PF00570 HRDC domain BRM88_RS08995 PF00271 Helicase conserved C-terminal domain BRM88_RS08995 PF00270 DEAD/DEAH box helicase BRM88_RS08995 PF09382 RQC domain BRM88_RS09005 PF00210 Ferritin-like domain BRM88_RS09010 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BRM88_RS09010 PF04408 Helicase associated domain (HA2) BRM88_RS09010 PF11898 Domain of unknown function (DUF3418) BRM88_RS09010 PF00271 Helicase conserved C-terminal domain BRM88_RS09010 PF00270 DEAD/DEAH box helicase BRM88_RS09040 PF04055 Radical SAM superfamily BRM88_RS09040 PF13186 Iron-sulfur cluster-binding domain BRM88_RS09045 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BRM88_RS09050 PF03070 TENA/THI-4/PQQC family BRM88_RS09055 PF12706 Beta-lactamase superfamily domain BRM88_RS09060 PF08042 PqqA family BRM88_RS09065 PF04607 Region found in RelA / SpoT proteins BRM88_RS09065 PF02824 TGS domain BRM88_RS09065 PF13291 ACT domain BRM88_RS09075 PF00535 Glycosyl transferase family 2 BRM88_RS09080 PF00912 Transglycosylase BRM88_RS09080 PF00905 Penicillin binding protein transpeptidase domain BRM88_RS09080 PF14814 Bifunctional transglycosylase second domain BRM88_RS09090 PF13307 Helicase C-terminal domain BRM88_RS09090 PF04851 Type III restriction enzyme, res subunit BRM88_RS09095 PF00814 Glycoprotease family BRM88_RS09100 PF03747 ADP-ribosylglycohydrolase BRM88_RS09110 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BRM88_RS09110 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BRM88_RS09115 PF00072 Response regulator receiver domain BRM88_RS09120 PF00072 Response regulator receiver domain BRM88_RS09125 PF01584 CheW-like domain BRM88_RS09130 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BRM88_RS09130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS09135 PF01627 Hpt domain BRM88_RS09135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS09135 PF02895 Signal transducing histidine kinase, homodimeric domain BRM88_RS09135 PF01584 CheW-like domain BRM88_RS09135 PF00072 Response regulator receiver domain BRM88_RS09150 PF13302 Acetyltransferase (GNAT) domain BRM88_RS09180 PF01112 Asparaginase BRM88_RS09185 PF03932 CutC family BRM88_RS09230 PF01301 Glycosyl hydrolases family 35 BRM88_RS09240 PF07971 Glycosyl hydrolase family 92 BRM88_RS09240 PF17678 Glycosyl hydrolase family 92 N-terminal domain BRM88_RS09305 PF00664 ABC transporter transmembrane region BRM88_RS09305 PF00005 ABC transporter BRM88_RS09305 PF03412 Peptidase C39 family BRM88_RS09310 PF07691 PA14 domain BRM88_RS09310 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_RS09310 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_RS09310 PF14310 Fibronectin type III-like domain BRM88_RS09330 PF01476 LysM domain BRM88_RS09330 PF00704 Glycosyl hydrolases family 18 BRM88_RS09345 PF02685 Glucokinase BRM88_RS09350 PF04452 RNA methyltransferase BRM88_RS09355 PF00202 Aminotransferase class-III BRM88_RS09360 PF00293 NUDIX domain BRM88_RS09365 PF00459 Inositol monophosphatase family BRM88_RS09370 PF03819 MazG nucleotide pyrophosphohydrolase domain BRM88_RS09385 PF16200 C-terminal region of band_7 BRM88_RS09385 PF01145 SPFH domain / Band 7 family BRM88_RS09395 PF01571 Aminomethyltransferase folate-binding domain BRM88_RS09395 PF08669 Glycine cleavage T-protein C-terminal barrel domain BRM88_RS09400 PF01597 Glycine cleavage H-protein BRM88_RS09435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_RS09435 PF09317 Domain of unknown function (DUF1974) BRM88_RS09435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_RS09445 PF00440 Bacterial regulatory proteins, tetR family BRM88_RS09450 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS09450 PF00593 TonB dependent receptor BRM88_RS09460 PF01430 Hsp33 protein BRM88_RS09465 PF00912 Transglycosylase BRM88_RS09470 PF00535 Glycosyl transferase family 2 BRM88_RS09490 PF03006 Haemolysin-III related BRM88_RS09495 PF00009 Elongation factor Tu GTP binding domain BRM88_RS09495 PF16658 Class II release factor RF3, C-terminal domain BRM88_RS09500 PF01551 Peptidase family M23 BRM88_RS09500 PF01476 LysM domain BRM88_RS09500 PF08525 Opacity-associated protein A N-terminal motif BRM88_RS09505 PF00561 alpha/beta hydrolase fold BRM88_RS09510 PF01053 Cys/Met metabolism PLP-dependent enzyme BRM88_RS09520 PF03315 Serine dehydratase beta chain BRM88_RS09520 PF03313 Serine dehydratase alpha chain BRM88_RS09535 PF04264 YceI-like domain BRM88_RS09545 PF04264 YceI-like domain BRM88_RS09550 PF00672 HAMP domain BRM88_RS09550 PF00072 Response regulator receiver domain BRM88_RS09550 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS09550 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM88_RS09550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS09550 PF01627 Hpt domain BRM88_RS09555 PF00072 Response regulator receiver domain BRM88_RS09555 PF01627 Hpt domain BRM88_RS09555 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM88_RS09555 PF00672 HAMP domain BRM88_RS09555 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS09555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS09560 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS09560 PF01627 Hpt domain BRM88_RS09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS09560 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM88_RS09560 PF00672 HAMP domain BRM88_RS09560 PF00072 Response regulator receiver domain BRM88_RS09595 PF07745 Glycosyl hydrolase family 53 BRM88_RS09605 PF06114 IrrE N-terminal-like domain BRM88_RS09605 PF09856 Predicted transcriptional regulator (DUF2083) BRM88_RS09605 PF01381 Helix-turn-helix BRM88_RS09610 PF00171 Aldehyde dehydrogenase family BRM88_RS09615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_RS09615 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_RS09615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_RS09620 PF00378 Enoyl-CoA hydratase/isomerase BRM88_RS09625 PF00378 Enoyl-CoA hydratase/isomerase BRM88_RS09625 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRM88_RS09625 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRM88_RS09630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRM88_RS09630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BRM88_RS09635 PF01545 Cation efflux family BRM88_RS09640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRM88_RS09640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRM88_RS09640 PF00378 Enoyl-CoA hydratase/isomerase BRM88_RS09645 PF04542 Sigma-70 region 2 BRM88_RS09645 PF08281 Sigma-70, region 4 BRM88_RS09655 PF13180 PDZ domain BRM88_RS09660 PF06421 GTP-binding protein LepA C-terminus BRM88_RS09660 PF00679 Elongation factor G C-terminus BRM88_RS09660 PF03144 Elongation factor Tu domain 2 BRM88_RS09660 PF00009 Elongation factor Tu GTP binding domain BRM88_RS09665 PF10502 Signal peptidase, peptidase S26 BRM88_RS09675 PF14622 Ribonuclease-III-like BRM88_RS09675 PF00035 Double-stranded RNA binding motif BRM88_RS09680 PF01926 50S ribosome-binding GTPase BRM88_RS09680 PF07650 KH domain BRM88_RS09685 PF11967 Recombination protein O N terminal BRM88_RS09685 PF02565 Recombination protein O C terminal BRM88_RS09695 PF05958 tRNA (Uracil-5-)-methyltransferase BRM88_RS09700 PF01928 CYTH domain BRM88_RS09710 PF05598 Transposase domain (DUF772) BRM88_RS09715 PF01323 DSBA-like thioredoxin domain BRM88_RS09720 PF01593 Flavin containing amine oxidoreductase BRM88_RS09725 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BRM88_RS09730 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_RS09735 PF00156 Phosphoribosyl transferase domain BRM88_RS09740 PF01048 Phosphorylase superfamily BRM88_RS09745 PF00313 'Cold-shock' DNA-binding domain BRM88_RS09765 PF00270 DEAD/DEAH box helicase BRM88_RS09765 PF08494 DEAD/H associated BRM88_RS09765 PF00271 Helicase conserved C-terminal domain BRM88_RS09770 PF04679 ATP dependent DNA ligase C terminal region BRM88_RS09770 PF01068 ATP dependent DNA ligase domain BRM88_RS09770 PF04675 DNA ligase N terminus BRM88_RS09780 PF04679 ATP dependent DNA ligase C terminal region BRM88_RS09780 PF04675 DNA ligase N terminus BRM88_RS09780 PF01068 ATP dependent DNA ligase domain BRM88_RS09795 PF00072 Response regulator receiver domain BRM88_RS09795 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS09810 PF00108 Thiolase, N-terminal domain BRM88_RS09810 PF02803 Thiolase, C-terminal domain BRM88_RS09815 PF12951 Passenger-associated-transport-repeat BRM88_RS09815 PF03797 Autotransporter beta-domain BRM88_RS09815 PF00082 Subtilase family BRM88_RS09820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BRM88_RS09820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BRM88_RS09835 PF01863 Protein of unknown function DUF45 BRM88_RS09840 PF07043 Protein of unknown function (DUF1328) BRM88_RS09850 PF01258 Prokaryotic dksA/traR C4-type zinc finger BRM88_RS09895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_RS09910 PF03831 PhnA domain BRM88_RS09910 PF08274 PhnA Zinc-Ribbon BRM88_RS09925 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRM88_RS09930 PF07690 Major Facilitator Superfamily BRM88_RS09985 PF09924 Uncharacterised conserved protein (DUF2156) BRM88_RS09985 PF03706 Lysylphosphatidylglycerol synthase TM region BRM88_RS09995 PF01042 Endoribonuclease L-PSP BRM88_RS10040 PF04542 Sigma-70 region 2 BRM88_RS10040 PF04545 Sigma-70, region 4 BRM88_RS10060 PF04060 Putative Fe-S cluster BRM88_RS10070 PF01588 Putative tRNA binding domain BRM88_RS10070 PF09334 tRNA synthetases class I (M) BRM88_RS10090 PF00324 Amino acid permease BRM88_RS10095 PF02574 Homocysteine S-methyltransferase BRM88_RS10110 PF02592 Putative vitamin uptake transporter BRM88_RS10125 PF05598 Transposase domain (DUF772) BRM88_RS10145 PF00009 Elongation factor Tu GTP binding domain BRM88_RS10190 PF03653 Uncharacterised protein family (UPF0093) BRM88_RS10215 PF00005 ABC transporter BRM88_RS10215 PF13732 Domain of unknown function (DUF4162) BRM88_RS10220 PF00593 TonB dependent receptor BRM88_RS10220 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS10230 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BRM88_RS10235 PF01336 OB-fold nucleic acid binding domain BRM88_RS10235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BRM88_RS10235 PF02811 PHP domain BRM88_RS10235 PF14579 Helix-hairpin-helix motif BRM88_RS10235 PF07733 Bacterial DNA polymerase III alpha NTPase domain BRM88_RS10240 PF01351 Ribonuclease HII BRM88_RS10245 PF02684 Lipid-A-disaccharide synthetase BRM88_RS10250 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BRM88_RS10250 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_RS10255 PF07977 FabA-like domain BRM88_RS10260 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BRM88_RS10260 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_RS10270 PF07244 Surface antigen variable number repeat BRM88_RS10270 PF01103 Surface antigen BRM88_RS10275 PF02163 Peptidase family M50 BRM88_RS10275 PF17820 PDZ domain BRM88_RS10280 PF13288 DXP reductoisomerase C-terminal domain BRM88_RS10280 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BRM88_RS10280 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BRM88_RS10290 PF01255 Putative undecaprenyl diphosphate synthase BRM88_RS10295 PF01765 Ribosome recycling factor BRM88_RS10300 PF00696 Amino acid kinase family BRM88_RS10310 PF00889 Elongation factor TS BRM88_RS10315 PF00318 Ribosomal protein S2 BRM88_RS10350 PF00557 Metallopeptidase family M24 BRM88_RS10355 PF08335 GlnD PII-uridylyltransferase BRM88_RS10355 PF01909 Nucleotidyltransferase domain BRM88_RS10355 PF01966 HD domain BRM88_RS10360 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_RS10360 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BRM88_RS10360 PF14602 Hexapeptide repeat of succinyl-transferase BRM88_RS10370 PF03960 ArsC family BRM88_RS10380 PF01546 Peptidase family M20/M25/M40 BRM88_RS10380 PF07687 Peptidase dimerisation domain BRM88_RS10385 PF00733 Asparagine synthase BRM88_RS10385 PF13537 Glutamine amidotransferase domain BRM88_RS10400 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS10400 PF00593 TonB dependent receptor BRM88_RS10405 PF01804 Penicillin amidase BRM88_RS10410 PF00210 Ferritin-like domain BRM88_RS10420 PF03989 DNA gyrase C-terminal domain, beta-propeller BRM88_RS10420 PF00521 DNA gyrase/topoisomerase IV, subunit A BRM88_RS10435 PF02321 Outer membrane efflux protein BRM88_RS10440 PF00529 HlyD membrane-fusion protein of T1SS BRM88_RS10440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_RS10445 PF07690 Major Facilitator Superfamily BRM88_RS10490 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BRM88_RS10490 PF02780 Transketolase, C-terminal domain BRM88_RS10490 PF02779 Transketolase, pyrimidine binding domain BRM88_RS10500 PF12806 Acetyl-CoA dehydrogenase C-terminal like BRM88_RS10500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_RS10500 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_RS10500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_RS10515 PF01668 SmpB protein BRM88_RS10520 PF03364 Polyketide cyclase / dehydrase and lipid transport BRM88_RS10525 PF03658 RnfH family Ubiquitin BRM88_RS10535 PF04355 SmpA / OmlA family BRM88_RS10540 PF01475 Ferric uptake regulator family BRM88_RS10545 PF02463 RecF/RecN/SMC N terminal domain BRM88_RS10550 PF01628 HrcA protein C terminal domain BRM88_RS10550 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BRM88_RS10555 PF01025 GrpE BRM88_RS10560 PF00012 Hsp70 protein BRM88_RS10565 PF00226 DnaJ domain BRM88_RS10565 PF00684 DnaJ central domain BRM88_RS10565 PF01556 DnaJ C terminal domain BRM88_RS10575 PF08543 Phosphomethylpyrimidine kinase BRM88_RS10580 PF02153 Prephenate dehydrogenase BRM88_RS10580 PF01817 Chorismate mutase type II BRM88_RS10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS10600 PF03466 LysR substrate binding domain BRM88_RS10615 PF00005 ABC transporter BRM88_RS10615 PF00664 ABC transporter transmembrane region BRM88_RS10620 PF01205 Uncharacterized protein family UPF0029 BRM88_RS10625 PF03641 Possible lysine decarboxylase BRM88_RS10630 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_RS10630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BRM88_RS10635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BRM88_RS10635 PF00364 Biotin-requiring enzyme BRM88_RS10635 PF02817 e3 binding domain BRM88_RS10640 PF16078 2-oxoglutarate dehydrogenase N-terminus BRM88_RS10640 PF02779 Transketolase, pyrimidine binding domain BRM88_RS10640 PF00676 Dehydrogenase E1 component BRM88_RS10640 PF16870 2-oxoglutarate dehydrogenase C-terminal BRM88_RS10650 PF08007 Cupin superfamily protein BRM88_RS10670 PF00206 Lyase BRM88_RS10670 PF08328 Adenylosuccinate lyase C-terminal BRM88_RS10700 PF00206 Lyase BRM88_RS10700 PF10415 Fumarase C C-terminus BRM88_RS10730 PF00005 ABC transporter BRM88_RS10735 PF00392 Bacterial regulatory proteins, gntR family BRM88_RS10745 PF00255 Glutathione peroxidase BRM88_RS10750 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BRM88_RS10750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_RS10755 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BRM88_RS10755 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BRM88_RS10755 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BRM88_RS10760 PF04102 SlyX BRM88_RS10775 PF00356 Bacterial regulatory proteins, lacI family BRM88_RS10780 PF07690 Major Facilitator Superfamily BRM88_RS10785 PF00294 pfkB family carbohydrate kinase BRM88_RS10795 PF02965 Vitamin B12 dependent methionine synthase, activation domain BRM88_RS10795 PF00809 Pterin binding enzyme BRM88_RS10795 PF02310 B12 binding domain BRM88_RS10795 PF02607 B12 binding domain BRM88_RS10795 PF02574 Homocysteine S-methyltransferase BRM88_RS10800 PF02574 Homocysteine S-methyltransferase BRM88_RS10800 PF00809 Pterin binding enzyme BRM88_RS10805 PF01209 ubiE/COQ5 methyltransferase family BRM88_RS10810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_RS10810 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_RS10810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_RS10840 PF08206 Ribonuclease B OB domain BRM88_RS10840 PF17876 Cold shock domain BRM88_RS10840 PF00773 RNB domain BRM88_RS10840 PF00575 S1 RNA binding domain BRM88_RS10840 PF08461 Ribonuclease R winged-helix domain BRM88_RS10860 PF00588 SpoU rRNA Methylase family BRM88_RS10860 PF08032 RNA 2'-O ribose methyltransferase substrate binding BRM88_RS10875 PF05598 Transposase domain (DUF772) BRM88_RS10875 PF01609 Transposase DDE domain BRM88_RS10900 PF00872 Transposase, Mutator family BRM88_RS10910 PF00313 'Cold-shock' DNA-binding domain BRM88_RS10915 PF00561 alpha/beta hydrolase fold BRM88_RS10925 PF05598 Transposase domain (DUF772) BRM88_RS10925 PF01609 Transposase DDE domain BRM88_RS10985 PF01609 Transposase DDE domain BRM88_RS10985 PF05598 Transposase domain (DUF772) BRM88_RS11010 PF03544 Gram-negative bacterial TonB protein C-terminal BRM88_RS11015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRM88_RS11015 PF02403 Seryl-tRNA synthetase N-terminal domain BRM88_RS11035 PF01609 Transposase DDE domain BRM88_RS11035 PF05598 Transposase domain (DUF772) BRM88_RS11040 PF02525 Flavodoxin-like fold BRM88_RS11045 PF03466 LysR substrate binding domain BRM88_RS11045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS11065 PF03377 TAL effector repeat BRM88_RS11085 PF03377 TAL effector repeat BRM88_RS11105 PF03377 TAL effector repeat BRM88_RS11140 PF03079 ARD/ARD' family BRM88_RS11145 PF00596 Class II Aldolase and Adducin N-terminal domain BRM88_RS11150 PF13520 Amino acid permease BRM88_RS11155 PF13520 Amino acid permease BRM88_RS11165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRM88_RS11165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRM88_RS11170 PF01565 FAD binding domain BRM88_RS11170 PF02913 FAD linked oxidases, C-terminal domain BRM88_RS11195 PF03918 Cytochrome C biogenesis protein BRM88_RS11200 PF08534 Redoxin BRM88_RS11205 PF01578 Cytochrome C assembly protein BRM88_RS11205 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BRM88_RS11210 PF03100 CcmE BRM88_RS11220 PF01578 Cytochrome C assembly protein BRM88_RS11225 PF03379 CcmB protein BRM88_RS11230 PF00005 ABC transporter BRM88_RS11235 PF00155 Aminotransferase class I and II BRM88_RS11240 PF00795 Carbon-nitrogen hydrolase BRM88_RS11260 PF01479 S4 domain BRM88_RS11260 PF00849 RNA pseudouridylate synthase BRM88_RS11265 PF04079 Segregation and condensation complex subunit ScpB BRM88_RS11270 PF02616 Segregation and condensation protein ScpA BRM88_RS11275 PF03795 YCII-related domain BRM88_RS11285 PF00356 Bacterial regulatory proteins, lacI family BRM88_RS11305 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS11310 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS11335 PF00795 Carbon-nitrogen hydrolase BRM88_RS11345 PF04371 Porphyromonas-type peptidyl-arginine deiminase BRM88_RS11355 PF00444 Ribosomal protein L36 BRM88_RS11360 PF02224 Cytidylate kinase BRM88_RS11365 PF00575 S1 RNA binding domain BRM88_RS11370 PF00216 Bacterial DNA-binding protein BRM88_RS11380 PF18073 Rubredoxin metal binding domain BRM88_RS11385 PF00953 Glycosyl transferase family 4 BRM88_RS11390 PF02719 Polysaccharide biosynthesis protein BRM88_RS11395 PF00483 Nucleotidyl transferase BRM88_RS11415 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BRM88_RS11415 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BRM88_RS11420 PF00478 IMP dehydrogenase / GMP reductase domain BRM88_RS11420 PF00571 CBS domain BRM88_RS11425 PF00117 Glutamine amidotransferase class-I BRM88_RS11425 PF00958 GMP synthase C terminal domain BRM88_RS11425 PF02540 NAD synthase BRM88_RS11430 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BRM88_RS11435 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRM88_RS11435 PF00361 Proton-conducting membrane transporter BRM88_RS11435 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BRM88_RS11440 PF03466 LysR substrate binding domain BRM88_RS11440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS11465 PF03601 Conserved hypothetical protein 698 BRM88_RS11470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS11470 PF03466 LysR substrate binding domain BRM88_RS11485 PF00196 Bacterial regulatory proteins, luxR family BRM88_RS11485 PF00072 Response regulator receiver domain BRM88_RS11495 PF01566 Natural resistance-associated macrophage protein BRM88_RS11500 PF02742 Iron dependent repressor, metal binding and dimerisation domain BRM88_RS11500 PF01325 Iron dependent repressor, N-terminal DNA binding domain BRM88_RS11505 PF14437 MafB19-like deaminase BRM88_RS11510 PF00929 Exonuclease BRM88_RS11515 PF05552 Conserved TM helix BRM88_RS11515 PF00924 Mechanosensitive ion channel BRM88_RS11520 PF00391 PEP-utilising enzyme, mobile domain BRM88_RS11520 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BRM88_RS11520 PF02896 PEP-utilising enzyme, TIM barrel domain BRM88_RS11525 PF03618 Kinase/pyrophosphorylase BRM88_RS11545 PF01066 CDP-alcohol phosphatidyltransferase BRM88_RS11555 PF00561 alpha/beta hydrolase fold BRM88_RS11570 PF01266 FAD dependent oxidoreductase BRM88_RS11570 PF00355 Rieske [2Fe-2S] domain BRM88_RS11580 PF16921 Tex protein YqgF-like domain BRM88_RS11580 PF09371 Tex-like protein N-terminal domain BRM88_RS11580 PF00575 S1 RNA binding domain BRM88_RS11580 PF17674 HHH domain BRM88_RS11595 PF00072 Response regulator receiver domain BRM88_RS11605 PF04551 GcpE protein BRM88_RS11610 PF01569 PAP2 superfamily BRM88_RS11620 PF07690 Major Facilitator Superfamily BRM88_RS11635 PF01177 Asp/Glu/Hydantoin racemase BRM88_RS11640 PF00892 EamA-like transporter family BRM88_RS11645 PF01565 FAD binding domain BRM88_RS11645 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BRM88_RS11650 PF01180 Dihydroorotate dehydrogenase BRM88_RS11665 PF00171 Aldehyde dehydrogenase family BRM88_RS11680 PF00696 Amino acid kinase family BRM88_RS11680 PF01842 ACT domain BRM88_RS11680 PF13840 ACT domain BRM88_RS11680 PF00742 Homoserine dehydrogenase BRM88_RS11680 PF03447 Homoserine dehydrogenase, NAD binding domain BRM88_RS11685 PF08544 GHMP kinases C terminal BRM88_RS11685 PF00288 GHMP kinases N terminal domain BRM88_RS11700 PF14821 Threonine synthase N terminus BRM88_RS11700 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_RS11715 PF03129 Anticodon binding domain BRM88_RS11715 PF13393 Histidyl-tRNA synthetase BRM88_RS11735 PF01634 ATP phosphoribosyltransferase BRM88_RS11735 PF08029 HisG, C-terminal domain BRM88_RS11740 PF00815 Histidinol dehydrogenase BRM88_RS11745 PF00155 Aminotransferase class I and II BRM88_RS11750 PF00475 Imidazoleglycerol-phosphate dehydratase BRM88_RS11755 PF00117 Glutamine amidotransferase class-I BRM88_RS11760 PF00977 Histidine biosynthesis protein BRM88_RS11765 PF00977 Histidine biosynthesis protein BRM88_RS11770 PF01502 Phosphoribosyl-AMP cyclohydrolase BRM88_RS11770 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BRM88_RS11780 PF03377 TAL effector repeat BRM88_RS11795 PF03377 TAL effector repeat BRM88_RS11810 PF01043 SecA preprotein cross-linking domain BRM88_RS11810 PF07517 SecA DEAD-like domain BRM88_RS11810 PF02810 SEC-C motif BRM88_RS11810 PF07516 SecA Wing and Scaffold domain BRM88_RS11915 PF02303 Helix-destabilising protein BRM88_RS11990 PF03377 TAL effector repeat BRM88_RS12005 PF03377 TAL effector repeat BRM88_RS12025 PF03377 TAL effector repeat BRM88_RS12035 PF00665 Integrase core domain BRM88_RS12035 PF13333 Integrase core domain BRM88_RS12035 PF13276 HTH-like domain BRM88_RS12050 PF05598 Transposase domain (DUF772) BRM88_RS12050 PF01609 Transposase DDE domain BRM88_RS12075 PF00872 Transposase, Mutator family BRM88_RS12085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRM88_RS12105 PF01066 CDP-alcohol phosphatidyltransferase BRM88_RS12110 PF01541 GIY-YIG catalytic domain BRM88_RS12110 PF02151 UvrB/uvrC motif BRM88_RS12110 PF08459 UvrC Helix-hairpin-helix N-terminal BRM88_RS12120 PF01451 Low molecular weight phosphotyrosine protein phosphatase BRM88_RS12125 PF02348 Cytidylyltransferase BRM88_RS12130 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BRM88_RS12135 PF00664 ABC transporter transmembrane region BRM88_RS12135 PF00005 ABC transporter BRM88_RS12145 PF01618 MotA/TolQ/ExbB proton channel family BRM88_RS12150 PF03772 Competence protein BRM88_RS12150 PF00753 Metallo-beta-lactamase superfamily BRM88_RS12170 PF00005 ABC transporter BRM88_RS12175 PF02687 FtsX-like permease family BRM88_RS12175 PF12704 MacB-like periplasmic core domain BRM88_RS12185 PF03937 Flavinator of succinate dehydrogenase BRM88_RS12190 PF13085 2Fe-2S iron-sulfur cluster binding domain BRM88_RS12200 PF00890 FAD binding domain BRM88_RS12200 PF02910 Fumarate reductase flavoprotein C-term BRM88_RS12205 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BRM88_RS12210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BRM88_RS12220 PF01571 Aminomethyltransferase folate-binding domain BRM88_RS12230 PF17912 MalK OB fold domain BRM88_RS12230 PF00005 ABC transporter BRM88_RS12235 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BRM88_RS12235 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BRM88_RS12240 PF02685 Glucokinase BRM88_RS12245 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BRM88_RS12250 PF00920 Dehydratase family BRM88_RS12255 PF01081 KDPG and KHG aldolase BRM88_RS12285 PF00072 Response regulator receiver domain BRM88_RS12285 PF01627 Hpt domain BRM88_RS12285 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS12285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS12285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRM88_RS12285 PF00672 HAMP domain BRM88_RS12315 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS12345 PF02253 Phospholipase A1 BRM88_RS12365 PF05681 Fumarate hydratase (Fumerase) BRM88_RS12365 PF05683 Fumarase C-terminus BRM88_RS12370 PF00005 ABC transporter BRM88_RS12375 PF00970 Oxidoreductase FAD-binding domain BRM88_RS12375 PF00175 Oxidoreductase NAD-binding domain BRM88_RS12380 PF00255 Glutathione peroxidase BRM88_RS12410 PF04542 Sigma-70 region 2 BRM88_RS12410 PF08281 Sigma-70, region 4 BRM88_RS12420 PF12802 MarR family BRM88_RS12455 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_RS12455 PF14310 Fibronectin type III-like domain BRM88_RS12455 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_RS12470 PF00360 Phytochrome region BRM88_RS12470 PF00563 EAL domain BRM88_RS12470 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS12470 PF01590 GAF domain BRM88_RS12480 PF00474 Sodium:solute symporter family BRM88_RS12490 PF14310 Fibronectin type III-like domain BRM88_RS12490 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_RS12490 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_RS12515 PF00342 Phosphoglucose isomerase BRM88_RS12520 PF02261 Aspartate decarboxylase BRM88_RS12525 PF02569 Pantoate-beta-alanine ligase BRM88_RS12530 PF02548 Ketopantoate hydroxymethyltransferase BRM88_RS12535 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BRM88_RS12540 PF12626 Polymerase A arginine-rich C-terminus BRM88_RS12540 PF12627 Probable RNA and SrmB- binding site of polymerase A BRM88_RS12540 PF01743 Poly A polymerase head domain BRM88_RS12550 PF02649 Type I GTP cyclohydrolase folE2 BRM88_RS12555 PF01520 N-acetylmuramoyl-L-alanine amidase BRM88_RS12575 PF05598 Transposase domain (DUF772) BRM88_RS12580 PF00082 Subtilase family BRM88_RS12580 PF03797 Autotransporter beta-domain BRM88_RS12590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_RS12595 PF00873 AcrB/AcrD/AcrF family BRM88_RS12600 PF02321 Outer membrane efflux protein BRM88_RS12605 PF08448 PAS fold BRM88_RS12605 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS12605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS12605 PF00072 Response regulator receiver domain BRM88_RS12605 PF13426 PAS domain BRM88_RS12610 PF00196 Bacterial regulatory proteins, luxR family BRM88_RS12610 PF00072 Response regulator receiver domain BRM88_RS12615 PF12951 Passenger-associated-transport-repeat BRM88_RS12650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BRM88_RS12655 PF01842 ACT domain BRM88_RS12655 PF01817 Chorismate mutase type II BRM88_RS12655 PF00800 Prephenate dehydratase BRM88_RS12660 PF00266 Aminotransferase class-V BRM88_RS12665 PF00174 Oxidoreductase molybdopterin binding domain BRM88_RS12675 PF01794 Ferric reductase like transmembrane component BRM88_RS12700 PF07702 UTRA domain BRM88_RS12700 PF00392 Bacterial regulatory proteins, gntR family BRM88_RS12710 PF07969 Amidohydrolase family BRM88_RS12715 PF00221 Aromatic amino acid lyase BRM88_RS12725 PF17391 Urocanase N-terminal domain BRM88_RS12725 PF17392 Urocanase C-terminal domain BRM88_RS12725 PF01175 Urocanase Rossmann-like domain BRM88_RS12745 PF00521 DNA gyrase/topoisomerase IV, subunit A BRM88_RS12745 PF03989 DNA gyrase C-terminal domain, beta-propeller BRM88_RS12750 PF01008 Initiation factor 2 subunit family BRM88_RS12765 PF00152 tRNA synthetases class II (D, K and N) BRM88_RS12770 PF03120 NAD-dependent DNA ligase OB-fold domain BRM88_RS12770 PF00533 BRCA1 C Terminus (BRCT) domain BRM88_RS12770 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BRM88_RS12770 PF12826 Helix-hairpin-helix motif BRM88_RS12770 PF01653 NAD-dependent DNA ligase adenylation domain BRM88_RS12780 PF04354 ZipA, C-terminal FtsZ-binding domain BRM88_RS12785 PF02463 RecF/RecN/SMC N terminal domain BRM88_RS12790 PF01281 Ribosomal protein L9, N-terminal domain BRM88_RS12790 PF03948 Ribosomal protein L9, C-terminal domain BRM88_RS12795 PF01084 Ribosomal protein S18 BRM88_RS12800 PF01250 Ribosomal protein S6 BRM88_RS12805 PF01521 Iron-sulphur cluster biosynthesis BRM88_RS12815 PF00152 tRNA synthetases class II (D, K and N) BRM88_RS12815 PF01336 OB-fold nucleic acid binding domain BRM88_RS12840 PF00484 Carbonic anhydrase BRM88_RS12845 PF06052 3-hydroxyanthranilic acid dioxygenase BRM88_RS12855 PF00266 Aminotransferase class-V BRM88_RS12860 PF01494 FAD binding domain BRM88_RS12865 PF00929 Exonuclease BRM88_RS12865 PF08411 Exonuclease C-terminal BRM88_RS12875 PF00248 Aldo/keto reductase family BRM88_RS12890 PF01513 ATP-NAD kinase BRM88_RS12900 PF10672 S-adenosylmethionine-dependent methyltransferase BRM88_RS12900 PF01170 Putative RNA methylase family UPF0020 BRM88_RS12900 PF02926 THUMP domain BRM88_RS12940 PF00581 Rhodanese-like domain BRM88_RS12945 PF00293 NUDIX domain BRM88_RS12950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BRM88_RS12950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_RS12955 PF00378 Enoyl-CoA hydratase/isomerase BRM88_RS12965 PF10576 Iron-sulfur binding domain of endonuclease III BRM88_RS12965 PF00633 Helix-hairpin-helix motif BRM88_RS12965 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM88_RS12975 PF00484 Carbonic anhydrase BRM88_RS12980 PF01609 Transposase DDE domain BRM88_RS12980 PF05598 Transposase domain (DUF772) BRM88_RS13015 PF12849 PBP superfamily domain BRM88_RS13020 PF12849 PBP superfamily domain BRM88_RS13025 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS13030 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS13035 PF00005 ABC transporter BRM88_RS13040 PF01895 PhoU domain BRM88_RS13050 PF00929 Exonuclease BRM88_RS13065 PF00872 Transposase, Mutator family BRM88_RS13095 PF00589 Phage integrase family BRM88_RS13095 PF13495 Phage integrase, N-terminal SAM-like domain BRM88_RS13100 PF07549 SecD/SecF GG Motif BRM88_RS13100 PF02355 Protein export membrane protein BRM88_RS13105 PF13721 SecD export protein N-terminal TM region BRM88_RS13105 PF02355 Protein export membrane protein BRM88_RS13105 PF07549 SecD/SecF GG Motif BRM88_RS13110 PF02699 Preprotein translocase subunit BRM88_RS13115 PF01702 Queuine tRNA-ribosyltransferase BRM88_RS13120 PF02547 Queuosine biosynthesis protein BRM88_RS13205 PF00037 4Fe-4S binding domain BRM88_RS13220 PF01467 Cytidylyltransferase-like BRM88_RS13230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS13230 PF00183 Hsp90 protein BRM88_RS13245 PF00899 ThiF family BRM88_RS13260 PF05598 Transposase domain (DUF772) BRM88_RS13275 PF01609 Transposase DDE domain BRM88_RS13275 PF05598 Transposase domain (DUF772) BRM88_RS13285 PF01609 Transposase DDE domain BRM88_RS13285 PF05598 Transposase domain (DUF772) BRM88_RS13315 PF03454 MoeA C-terminal region (domain IV) BRM88_RS13315 PF03453 MoeA N-terminal region (domain I and II) BRM88_RS13315 PF00994 Probable molybdopterin binding domain BRM88_RS13320 PF01926 50S ribosome-binding GTPase BRM88_RS13320 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BRM88_RS13325 PF01011 PQQ enzyme repeat BRM88_RS13325 PF13360 PQQ-like domain BRM88_RS13335 PF13464 Domain of unknown function (DUF4115) BRM88_RS13345 PF04055 Radical SAM superfamily BRM88_RS13350 PF00334 Nucleoside diphosphate kinase BRM88_RS13360 PF00378 Enoyl-CoA hydratase/isomerase BRM88_RS13360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRM88_RS13360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRM88_RS13365 PF02803 Thiolase, C-terminal domain BRM88_RS13365 PF00108 Thiolase, N-terminal domain BRM88_RS13370 PF00654 Voltage gated chloride channel BRM88_RS13380 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BRM88_RS13390 PF12002 MgsA AAA+ ATPase C terminal BRM88_RS13390 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_RS13390 PF16193 AAA C-terminal domain BRM88_RS13405 PF03548 Outer membrane lipoprotein carrier protein LolA BRM88_RS13415 PF09397 Ftsk gamma domain BRM88_RS13415 PF01580 FtsK/SpoIIIE family BRM88_RS13415 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BRM88_RS13415 PF17854 FtsK alpha domain BRM88_RS13420 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_RS13435 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BRM88_RS13440 PF01176 Translation initiation factor 1A / IF-1 BRM88_RS13445 PF17871 AAA lid domain BRM88_RS13445 PF02861 Clp amino terminal domain, pathogenicity island component BRM88_RS13445 PF07724 AAA domain (Cdc48 subfamily) BRM88_RS13445 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_RS13445 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_RS13450 PF02617 ATP-dependent Clp protease adaptor protein ClpS BRM88_RS13455 PF00293 NUDIX domain BRM88_RS13465 PF04356 Protein of unknown function (DUF489) BRM88_RS13470 PF12729 Four helix bundle sensory module for signal transduction BRM88_RS13470 PF00672 HAMP domain BRM88_RS13470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS13485 PF00563 EAL domain BRM88_RS13485 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS13485 PF08447 PAS fold BRM88_RS13485 PF08448 PAS fold BRM88_RS13490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS13490 PF07730 Histidine kinase BRM88_RS13495 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS13495 PF00563 EAL domain BRM88_RS13495 PF03707 Bacterial signalling protein N terminal repeat BRM88_RS13500 PF13426 PAS domain BRM88_RS13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS13500 PF13188 PAS domain BRM88_RS13500 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS13500 PF00989 PAS fold BRM88_RS13520 PF01584 CheW-like domain BRM88_RS13520 PF00072 Response regulator receiver domain BRM88_RS13530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_RS13530 PF00460 Flagella basal body rod protein BRM88_RS13535 PF03963 Flagellar hook capping protein - N-terminal region BRM88_RS13540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_RS13540 PF00460 Flagella basal body rod protein BRM88_RS13540 PF07559 Flagellar basal body protein FlaE BRM88_RS13545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_RS13545 PF00460 Flagella basal body rod protein BRM88_RS13555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_RS13555 PF00460 Flagella basal body rod protein BRM88_RS13560 PF02107 Flagellar L-ring protein BRM88_RS13565 PF02119 Flagellar P-ring protein BRM88_RS13570 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BRM88_RS13570 PF10135 Rod binding protein BRM88_RS13575 PF07196 Flagellin hook IN motif BRM88_RS13575 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_RS13585 PF00700 Bacterial flagellin C-terminal helical region BRM88_RS13585 PF00669 Bacterial flagellin N-terminal helical region BRM88_RS13590 PF07195 Flagellar hook-associated protein 2 C-terminus BRM88_RS13590 PF02465 Flagellar hook-associated protein 2 N-terminus BRM88_RS13590 PF07196 Flagellin hook IN motif BRM88_RS13595 PF02561 Flagellar protein FliS BRM88_RS13610 PF00072 Response regulator receiver domain BRM88_RS13610 PF00196 Bacterial regulatory proteins, luxR family BRM88_RS13615 PF04963 Sigma-54 factor, core binding domain BRM88_RS13615 PF00309 Sigma-54 factor, Activator interacting domain (AID) BRM88_RS13615 PF04552 Sigma-54, DNA binding domain BRM88_RS13620 PF01339 CheB methylesterase BRM88_RS13620 PF00072 Response regulator receiver domain BRM88_RS13625 PF06490 Flagellar regulatory protein FleQ BRM88_RS13625 PF00158 Sigma-54 interaction domain BRM88_RS13625 PF02954 Bacterial regulatory protein, Fis family BRM88_RS13630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BRM88_RS13640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRM88_RS13640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRM88_RS13675 PF00535 Glycosyl transferase family 2 BRM88_RS13675 PF00534 Glycosyl transferases group 1 BRM88_RS13685 PF02049 Flagellar hook-basal body complex protein FliE BRM88_RS13690 PF08345 Flagellar M-ring protein C-terminal BRM88_RS13690 PF01514 Secretory protein of YscJ/FliF family BRM88_RS13695 PF14841 FliG middle domain BRM88_RS13695 PF14842 FliG N-terminal domain BRM88_RS13695 PF01706 FliG C-terminal domain BRM88_RS13705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_RS13705 PF18269 T3SS EscN ATPase C-terminal domain BRM88_RS13725 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BRM88_RS13725 PF02154 Flagellar motor switch protein FliM BRM88_RS13730 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BRM88_RS13735 PF04347 Flagellar biosynthesis protein, FliO BRM88_RS13740 PF00813 FliP family BRM88_RS13750 PF01313 Bacterial export proteins, family 3 BRM88_RS13755 PF01311 Bacterial export proteins, family 1 BRM88_RS13760 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS13765 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS13770 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS13770 PF03707 Bacterial signalling protein N terminal repeat BRM88_RS13770 PF00563 EAL domain BRM88_RS13775 PF01312 FlhB HrpN YscU SpaS Family BRM88_RS13780 PF00771 FHIPEP family BRM88_RS13785 PF00448 SRP54-type protein, GTPase domain BRM88_RS13790 PF10609 NUBPL iron-transfer P-loop NTPase BRM88_RS13795 PF04542 Sigma-70 region 2 BRM88_RS13795 PF04539 Sigma-70 region 3 BRM88_RS13795 PF04545 Sigma-70, region 4 BRM88_RS13800 PF00072 Response regulator receiver domain BRM88_RS13805 PF04344 Chemotaxis phosphatase, CheZ BRM88_RS13810 PF02895 Signal transducing histidine kinase, homodimeric domain BRM88_RS13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS13810 PF01584 CheW-like domain BRM88_RS13810 PF01627 Hpt domain BRM88_RS13810 PF00072 Response regulator receiver domain BRM88_RS13850 PF05598 Transposase domain (DUF772) BRM88_RS13850 PF01609 Transposase DDE domain BRM88_RS13860 PF05593 RHS Repeat BRM88_RS13860 PF03527 RHS protein BRM88_RS13870 PF01609 Transposase DDE domain BRM88_RS13870 PF05598 Transposase domain (DUF772) BRM88_RS13880 PF01609 Transposase DDE domain BRM88_RS13880 PF05598 Transposase domain (DUF772) BRM88_RS13920 PF00034 Cytochrome c BRM88_RS13975 PF00005 ABC transporter BRM88_RS13975 PF00664 ABC transporter transmembrane region BRM88_RS13980 PF00664 ABC transporter transmembrane region BRM88_RS13980 PF00005 ABC transporter BRM88_RS14005 PF01654 Cytochrome bd terminal oxidase subunit I BRM88_RS14035 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BRM88_RS14035 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BRM88_RS14040 PF00171 Aldehyde dehydrogenase family BRM88_RS14045 PF00696 Amino acid kinase family BRM88_RS14045 PF01472 PUA domain BRM88_RS14060 PF00206 Lyase BRM88_RS14065 PF01118 Semialdehyde dehydrogenase, NAD binding domain BRM88_RS14075 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase BRM88_RS14075 PF00696 Amino acid kinase family BRM88_RS14080 PF07687 Peptidase dimerisation domain BRM88_RS14080 PF01546 Peptidase family M20/M25/M40 BRM88_RS14090 PF00764 Arginosuccinate synthase BRM88_RS14095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BRM88_RS14095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BRM88_RS14105 PF01406 tRNA synthetases class I (C) catalytic domain BRM88_RS14105 PF09190 DALR domain BRM88_RS14110 PF02657 Fe-S metabolism associated domain BRM88_RS14125 PF01258 Prokaryotic dksA/traR C4-type zinc finger BRM88_RS14130 PF01809 Putative membrane protein insertion efficiency factor BRM88_RS14135 PF01979 Amidohydrolase family BRM88_RS14140 PF01551 Peptidase family M23 BRM88_RS14140 PF08460 Bacterial SH3 domain BRM88_RS14185 PF01609 Transposase DDE domain BRM88_RS14185 PF05598 Transposase domain (DUF772) BRM88_RS14200 PF01095 Pectinesterase BRM88_RS14215 PF00295 Glycosyl hydrolases family 28 BRM88_RS14225 PF13419 Haloacid dehalogenase-like hydrolase BRM88_RS14235 PF01979 Amidohydrolase family BRM88_RS14245 PF01132 Elongation factor P (EF-P) OB domain BRM88_RS14245 PF09285 Elongation factor P, C-terminal BRM88_RS14245 PF08207 Elongation factor P (EF-P) KOW-like domain BRM88_RS14250 PF04055 Radical SAM superfamily BRM88_RS14255 PF00563 EAL domain BRM88_RS14255 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS14255 PF03707 Bacterial signalling protein N terminal repeat BRM88_RS14255 PF13188 PAS domain BRM88_RS14265 PF00588 SpoU rRNA Methylase family BRM88_RS14270 PF00459 Inositol monophosphatase family BRM88_RS14275 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRM88_RS14275 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRM88_RS14280 PF00545 ribonuclease BRM88_RS14300 PF12848 ABC transporter BRM88_RS14300 PF16326 ABC transporter C-terminal domain BRM88_RS14300 PF00005 ABC transporter BRM88_RS14305 PF00270 DEAD/DEAH box helicase BRM88_RS14305 PF00271 Helicase conserved C-terminal domain BRM88_RS14305 PF03880 DbpA RNA binding domain BRM88_RS14310 PF00156 Phosphoribosyl transferase domain BRM88_RS14315 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BRM88_RS14325 PF02798 Glutathione S-transferase, N-terminal domain BRM88_RS14325 PF14497 Glutathione S-transferase, C-terminal domain BRM88_RS14330 PF00313 'Cold-shock' DNA-binding domain BRM88_RS14335 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BRM88_RS14340 PF07152 YaeQ protein BRM88_RS14350 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS14350 PF00563 EAL domain BRM88_RS14350 PF00072 Response regulator receiver domain BRM88_RS14355 PF01435 Peptidase family M48 BRM88_RS14360 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRM88_RS14365 PF00106 short chain dehydrogenase BRM88_RS14370 PF05233 PHB accumulation regulatory domain BRM88_RS14370 PF07879 PHB/PHA accumulation regulator DNA-binding domain BRM88_RS14390 PF01119 DNA mismatch repair protein, C-terminal domain BRM88_RS14390 PF08676 MutL C terminal dimerisation domain BRM88_RS14395 PF01520 N-acetylmuramoyl-L-alanine amidase BRM88_RS14395 PF11741 AMIN domain BRM88_RS14400 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BRM88_RS14405 PF01256 Carbohydrate kinase BRM88_RS14405 PF03853 YjeF-related protein N-terminus BRM88_RS14410 PF08331 Domain of unknown function (DUF1730) BRM88_RS14415 PF02601 Exonuclease VII, large subunit BRM88_RS14415 PF13742 OB-fold nucleic acid binding domain BRM88_RS14430 PF03781 Sulfatase-modifying factor enzyme 1 BRM88_RS14445 PF00570 HRDC domain BRM88_RS14445 PF01612 3'-5' exonuclease BRM88_RS14450 PF04679 ATP dependent DNA ligase C terminal region BRM88_RS14450 PF13298 DNA polymerase Ligase (LigD) BRM88_RS14450 PF01068 ATP dependent DNA ligase domain BRM88_RS14450 PF04679 ATP dependent DNA ligase C terminal region BRM88_RS14450 PF01068 ATP dependent DNA ligase domain BRM88_RS14450 PF13298 DNA polymerase Ligase (LigD) BRM88_RS14500 PF00171 Aldehyde dehydrogenase family BRM88_RS14500 PF01619 Proline dehydrogenase BRM88_RS14500 PF14850 DNA-binding domain of Proline dehydrogenase BRM88_RS14500 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BRM88_RS14515 PF00872 Transposase, Mutator family BRM88_RS14560 PF04386 Stringent starvation protein B BRM88_RS14565 PF02798 Glutathione S-transferase, N-terminal domain BRM88_RS14565 PF00043 Glutathione S-transferase, C-terminal domain BRM88_RS14570 PF02167 Cytochrome C1 family BRM88_RS14575 PF00032 Cytochrome b(C-terminal)/b6/petD BRM88_RS14575 PF00033 Cytochrome b/b6/petB BRM88_RS14580 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BRM88_RS14580 PF00355 Rieske [2Fe-2S] domain BRM88_RS14590 PF01464 Transglycosylase SLT domain BRM88_RS14610 PF00919 Uncharacterized protein family UPF0004 BRM88_RS14610 PF04055 Radical SAM superfamily BRM88_RS14610 PF01938 TRAM domain BRM88_RS14615 PF02562 PhoH-like protein BRM88_RS14625 PF02130 Uncharacterized protein family UPF0054 BRM88_RS14635 PF03471 Transporter associated domain BRM88_RS14635 PF00571 CBS domain BRM88_RS14650 PF00171 Aldehyde dehydrogenase family BRM88_RS14660 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS14670 PF08402 TOBE domain BRM88_RS14670 PF00005 ABC transporter BRM88_RS14675 PF02321 Outer membrane efflux protein BRM88_RS14680 PF07690 Major Facilitator Superfamily BRM88_RS14685 PF13533 Biotin-lipoyl like BRM88_RS14700 PF00120 Glutamine synthetase, catalytic domain BRM88_RS14710 PF00120 Glutamine synthetase, catalytic domain BRM88_RS14715 PF01266 FAD dependent oxidoreductase BRM88_RS14720 PF00072 Response regulator receiver domain BRM88_RS14720 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS14725 PF07690 Major Facilitator Superfamily BRM88_RS14725 PF00083 Sugar (and other) transporter BRM88_RS14735 PF00384 Molybdopterin oxidoreductase BRM88_RS14740 PF02634 FdhD/NarQ family BRM88_RS14745 PF07690 Major Facilitator Superfamily BRM88_RS14765 PF00202 Aminotransferase class-III BRM88_RS14770 PF00005 ABC transporter BRM88_RS14780 PF04286 Protein of unknown function (DUF445) BRM88_RS14785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS14785 PF01627 Hpt domain BRM88_RS14785 PF00072 Response regulator receiver domain BRM88_RS14785 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRM88_RS14785 PF00672 HAMP domain BRM88_RS14785 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS14790 PF00072 Response regulator receiver domain BRM88_RS14795 PF01609 Transposase DDE domain BRM88_RS14795 PF05598 Transposase domain (DUF772) BRM88_RS14805 PF05088 Bacterial NAD-glutamate dehydrogenase BRM88_RS14815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_RS14815 PF00529 HlyD membrane-fusion protein of T1SS BRM88_RS14820 PF00873 AcrB/AcrD/AcrF family BRM88_RS14845 PF00391 PEP-utilising enzyme, mobile domain BRM88_RS14845 PF02896 PEP-utilising enzyme, TIM barrel domain BRM88_RS14845 PF05524 PEP-utilising enzyme, N-terminal BRM88_RS14845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BRM88_RS14845 PF00381 PTS HPr component phosphorylation site BRM88_RS14850 PF00294 pfkB family carbohydrate kinase BRM88_RS14855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BRM88_RS14865 PF05598 Transposase domain (DUF772) BRM88_RS14865 PF01609 Transposase DDE domain BRM88_RS14875 PF05598 Transposase domain (DUF772) BRM88_RS14875 PF01609 Transposase DDE domain BRM88_RS14930 PF06715 Gp5 C-terminal repeat (3 copies) BRM88_RS14930 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS14945 PF03377 TAL effector repeat BRM88_RS14950 PF05598 Transposase domain (DUF772) BRM88_RS14950 PF01609 Transposase DDE domain BRM88_RS14955 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS15015 PF01609 Transposase DDE domain BRM88_RS15015 PF05598 Transposase domain (DUF772) BRM88_RS15045 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS15045 PF00593 TonB dependent receptor BRM88_RS15055 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRM88_RS15055 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRM88_RS15065 PF00593 TonB dependent receptor BRM88_RS15065 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS15075 PF01618 MotA/TolQ/ExbB proton channel family BRM88_RS15080 PF00691 OmpA family BRM88_RS15080 PF13677 Membrane MotB of proton-channel complex MotA/MotB BRM88_RS15085 PF13614 AAA domain BRM88_RS15090 PF01584 CheW-like domain BRM88_RS15100 PF00072 Response regulator receiver domain BRM88_RS15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS15105 PF02895 Signal transducing histidine kinase, homodimeric domain BRM88_RS15105 PF01584 CheW-like domain BRM88_RS15105 PF09078 CheY binding BRM88_RS15105 PF01627 Hpt domain BRM88_RS15125 PF00672 HAMP domain BRM88_RS15125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS15125 PF02203 Tar ligand binding domain homologue BRM88_RS15140 PF02203 Tar ligand binding domain homologue BRM88_RS15140 PF00672 HAMP domain BRM88_RS15140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS15150 PF02203 Tar ligand binding domain homologue BRM88_RS15150 PF00672 HAMP domain BRM88_RS15150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS15160 PF02203 Tar ligand binding domain homologue BRM88_RS15160 PF00672 HAMP domain BRM88_RS15160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS15165 PF02203 Tar ligand binding domain homologue BRM88_RS15165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS15165 PF00672 HAMP domain BRM88_RS15170 PF00672 HAMP domain BRM88_RS15170 PF02203 Tar ligand binding domain homologue BRM88_RS15170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS15175 PF00672 HAMP domain BRM88_RS15175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS15175 PF02203 Tar ligand binding domain homologue BRM88_RS15190 PF07238 PilZ domain BRM88_RS15190 PF07317 Flagellar regulator YcgR BRM88_RS15195 PF01584 CheW-like domain BRM88_RS15220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_RS15220 PF02203 Tar ligand binding domain homologue BRM88_RS15220 PF00672 HAMP domain BRM88_RS15225 PF01739 CheR methyltransferase, SAM binding domain BRM88_RS15225 PF03705 CheR methyltransferase, all-alpha domain BRM88_RS15230 PF03975 CheD chemotactic sensory transduction BRM88_RS15235 PF00072 Response regulator receiver domain BRM88_RS15235 PF01339 CheB methylesterase BRM88_RS15240 PF00563 EAL domain BRM88_RS15240 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS15240 PF03707 Bacterial signalling protein N terminal repeat BRM88_RS15255 PF00561 alpha/beta hydrolase fold BRM88_RS15260 PF11791 Aconitate B N-terminal domain BRM88_RS15260 PF06434 Aconitate hydratase 2 N-terminus BRM88_RS15260 PF00330 Aconitase family (aconitate hydratase) BRM88_RS15275 PF00330 Aconitase family (aconitate hydratase) BRM88_RS15275 PF00694 Aconitase C-terminal domain BRM88_RS15285 PF00501 AMP-binding enzyme BRM88_RS15285 PF13193 AMP-binding enzyme C-terminal domain BRM88_RS15290 PF00378 Enoyl-CoA hydratase/isomerase BRM88_RS15295 PF00072 Response regulator receiver domain BRM88_RS15295 PF01627 Hpt domain BRM88_RS15295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS15295 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS15305 PF00072 Response regulator receiver domain BRM88_RS15310 PF01336 OB-fold nucleic acid binding domain BRM88_RS15310 PF00152 tRNA synthetases class II (D, K and N) BRM88_RS15335 PF13542 Helix-turn-helix domain of transposase family ISL3 BRM88_RS15335 PF01610 Transposase BRM88_RS15335 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 BRM88_RS15370 PF01368 DHH family BRM88_RS15370 PF17768 RecJ OB domain BRM88_RS15370 PF02272 DHHA1 domain BRM88_RS15380 PF01272 Transcription elongation factor, GreA/GreB, C-term BRM88_RS15380 PF03449 Transcription elongation factor, N-terminal BRM88_RS15385 PF02142 MGS-like domain BRM88_RS15385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRM88_RS15385 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BRM88_RS15395 PF00117 Glutamine amidotransferase class-I BRM88_RS15395 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BRM88_RS15400 PF01113 Dihydrodipicolinate reductase, N-terminus BRM88_RS15400 PF05173 Dihydrodipicolinate reductase, C-terminus BRM88_RS15410 PF03475 3-alpha domain BRM88_RS15410 PF03473 MOSC domain BRM88_RS15415 PF00155 Aminotransferase class I and II BRM88_RS15435 PF07670 Nucleoside recognition BRM88_RS15435 PF02421 Ferrous iron transport protein B BRM88_RS15435 PF07664 Ferrous iron transport protein B C terminus BRM88_RS15445 PF00378 Enoyl-CoA hydratase/isomerase BRM88_RS15455 PF00682 HMGL-like BRM88_RS15460 PF00106 short chain dehydrogenase BRM88_RS15465 PF01132 Elongation factor P (EF-P) OB domain BRM88_RS15465 PF08207 Elongation factor P (EF-P) KOW-like domain BRM88_RS15465 PF09285 Elongation factor P, C-terminal BRM88_RS15485 PF00083 Sugar (and other) transporter BRM88_RS15495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BRM88_RS15495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BRM88_RS15505 PF17137 Domain of unknown function (DUF5110) BRM88_RS15505 PF01055 Glycosyl hydrolases family 31 BRM88_RS15505 PF16338 Domain of unknown function (DUF4968) BRM88_RS15515 PF03466 LysR substrate binding domain BRM88_RS15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS15520 PF01081 KDPG and KHG aldolase BRM88_RS15525 PF13378 Enolase C-terminal domain-like BRM88_RS15525 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM88_RS15530 PF08450 SMP-30/Gluconolactonase/LRE-like region BRM88_RS15535 PF05035 2-keto-3-deoxy-galactonokinase BRM88_RS15540 PF11953 Domain of unknown function (DUF3470) BRM88_RS15540 PF00037 4Fe-4S binding domain BRM88_RS15550 PF00701 Dihydrodipicolinate synthetase family BRM88_RS15565 PF00578 AhpC/TSA family BRM88_RS15570 PF02562 PhoH-like protein BRM88_RS15570 PF13638 PIN domain BRM88_RS15580 PF08543 Phosphomethylpyrimidine kinase BRM88_RS15610 PF03466 LysR substrate binding domain BRM88_RS15610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS15615 PF17954 Quercetinase C-terminal cupin domain BRM88_RS15615 PF02678 Pirin BRM88_RS15640 PF00772 DnaB-like helicase N terminal domain BRM88_RS15640 PF03796 DnaB-like helicase C terminal domain BRM88_RS15665 PF02599 Global regulator protein family BRM88_RS15670 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BRM88_RS15670 PF01411 tRNA synthetases class II (A) BRM88_RS15670 PF02272 DHHA1 domain BRM88_RS15675 PF02631 RecX family BRM88_RS15685 PF00154 recA bacterial DNA recombination protein BRM88_RS15690 PF01726 LexA DNA binding domain BRM88_RS15690 PF00717 Peptidase S24-like BRM88_RS15695 PF03109 ABC1 family BRM88_RS15700 PF02464 Competence-damaged protein BRM88_RS15705 PF01926 50S ribosome-binding GTPase BRM88_RS15705 PF13167 GTP-binding GTPase N-terminal BRM88_RS15705 PF16360 GTP-binding GTPase Middle Region BRM88_RS15710 PF17209 Hfq protein BRM88_RS15720 PF00809 Pterin binding enzyme BRM88_RS15725 PF17862 AAA+ lid domain BRM88_RS15725 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_RS15725 PF06480 FtsH Extracellular BRM88_RS15725 PF01434 Peptidase family M41 BRM88_RS15730 PF01728 FtsJ-like methyltransferase BRM88_RS15735 PF01985 CRS1 / YhbY (CRM) domain BRM88_RS15745 PF01551 Peptidase family M23 BRM88_RS15745 PF01476 LysM domain BRM88_RS15750 PF09335 SNARE associated Golgi protein BRM88_RS15760 PF01975 Survival protein SurE BRM88_RS15765 PF01713 Smr domain BRM88_RS15775 PF01142 tRNA pseudouridine synthase D (TruD) BRM88_RS15780 PF02542 YgbB family BRM88_RS15790 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BRM88_RS15795 PF04977 Septum formation initiator BRM88_RS15800 PF03952 Enolase, N-terminal domain BRM88_RS15800 PF00113 Enolase, C-terminal TIM barrel domain BRM88_RS15810 PF00793 DAHP synthetase I family BRM88_RS15815 PF00117 Glutamine amidotransferase class-I BRM88_RS15815 PF06418 CTP synthase N-terminus BRM88_RS15825 PF01751 Toprim domain BRM88_RS15825 PF00986 DNA gyrase B subunit, carboxyl terminus BRM88_RS15825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS15825 PF00204 DNA gyrase B BRM88_RS15840 PF02698 DUF218 domain BRM88_RS15845 PF01384 Phosphate transporter family BRM88_RS15860 PF03471 Transporter associated domain BRM88_RS15860 PF00571 CBS domain BRM88_RS15860 PF01595 Cyclin M transmembrane N-terminal domain BRM88_RS15875 PF00296 Luciferase-like monooxygenase BRM88_RS15895 PF07690 Major Facilitator Superfamily BRM88_RS15905 PF00005 ABC transporter BRM88_RS15905 PF00664 ABC transporter transmembrane region BRM88_RS15910 PF00005 ABC transporter BRM88_RS15930 PF00534 Glycosyl transferases group 1 BRM88_RS15930 PF13579 Glycosyl transferase 4-like domain BRM88_RS15950 PF08241 Methyltransferase domain BRM88_RS15965 PF00535 Glycosyl transferase family 2 BRM88_RS15970 PF01943 Polysaccharide biosynthesis protein BRM88_RS15975 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BRM88_RS15995 PF05523 WxcM-like, C-terminal BRM88_RS16010 PF00034 Cytochrome c BRM88_RS16020 PF08281 Sigma-70, region 4 BRM88_RS16020 PF04542 Sigma-70 region 2 BRM88_RS16030 PF00082 Subtilase family BRM88_RS16035 PF01578 Cytochrome C assembly protein BRM88_RS16040 PF04995 Heme exporter protein D (CcmD) BRM88_RS16045 PF03100 CcmE BRM88_RS16050 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BRM88_RS16050 PF01578 Cytochrome C assembly protein BRM88_RS16055 PF08534 Redoxin BRM88_RS16060 PF03918 Cytochrome C biogenesis protein BRM88_RS16070 PF03377 TAL effector repeat BRM88_RS16090 PF03377 TAL effector repeat BRM88_RS16105 PF03377 TAL effector repeat BRM88_RS16125 PF00873 AcrB/AcrD/AcrF family BRM88_RS16130 PF00529 HlyD membrane-fusion protein of T1SS BRM88_RS16130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_RS16180 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS16180 PF00072 Response regulator receiver domain BRM88_RS16185 PF00034 Cytochrome c BRM88_RS16185 PF03150 Di-haem cytochrome c peroxidase BRM88_RS16190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS16190 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS16195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS16195 PF03466 LysR substrate binding domain BRM88_RS16200 PF06812 ImpA, N-terminal, type VI secretion system BRM88_RS16220 PF00069 Protein kinase domain BRM88_RS16235 PF06761 Intracellular multiplication and human macrophage-killing BRM88_RS16235 PF06744 Type VI secretion protein IcmF C-terminal BRM88_RS16235 PF14331 ImcF-related N-terminal domain BRM88_RS16245 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE BRM88_RS16260 PF06715 Gp5 C-terminal repeat (3 copies) BRM88_RS16260 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS16280 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_RS16280 PF07724 AAA domain (Cdc48 subfamily) BRM88_RS16280 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_RS16280 PF17871 AAA lid domain BRM88_RS16290 PF05947 Type VI secretion system, TssF BRM88_RS16295 PF04965 Gene 25-like lysozyme BRM88_RS16300 PF07024 ImpE protein BRM88_RS16305 PF05638 Type VI secretion system effector, Hcp BRM88_RS16310 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath BRM88_RS16315 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 BRM88_RS16335 PF01609 Transposase DDE domain BRM88_RS16335 PF05598 Transposase domain (DUF772) BRM88_RS16355 PF01609 Transposase DDE domain BRM88_RS16355 PF05598 Transposase domain (DUF772) BRM88_RS16400 PF01106 NifU-like domain BRM88_RS16405 PF01329 Pterin 4 alpha carbinolamine dehydratase BRM88_RS16415 PF02535 ZIP Zinc transporter BRM88_RS16420 PF02535 ZIP Zinc transporter BRM88_RS16425 PF11737 Protein of unknown function (DUF3300) BRM88_RS16430 PF00849 RNA pseudouridylate synthase BRM88_RS16430 PF01479 S4 domain BRM88_RS16435 PF00575 S1 RNA binding domain BRM88_RS16435 PF10150 Ribonuclease E/G family BRM88_RS16435 PF12111 Polyribonucleotide phosphorylase C terminal BRM88_RS16450 PF00196 Bacterial regulatory proteins, luxR family BRM88_RS16450 PF00072 Response regulator receiver domain BRM88_RS16455 PF17773 UPF0176 acylphosphatase like domain BRM88_RS16455 PF00581 Rhodanese-like domain BRM88_RS16460 PF01609 Transposase DDE domain BRM88_RS16460 PF05598 Transposase domain (DUF772) BRM88_RS16470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_RS16480 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BRM88_RS16480 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BRM88_RS16480 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BRM88_RS16490 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BRM88_RS16490 PF01648 4'-phosphopantetheinyl transferase superfamily BRM88_RS16520 PF05598 Transposase domain (DUF772) BRM88_RS16520 PF01609 Transposase DDE domain BRM88_RS16525 PF05598 Transposase domain (DUF772) BRM88_RS16525 PF01609 Transposase DDE domain BRM88_RS16555 PF10414 Sirohaem synthase dimerisation region BRM88_RS16555 PF14824 Sirohaem biosynthesis protein central BRM88_RS16555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRM88_RS16580 PF12804 MobA-like NTP transferase domain BRM88_RS16585 PF03454 MoeA C-terminal region (domain IV) BRM88_RS16585 PF03453 MoeA N-terminal region (domain I and II) BRM88_RS16585 PF00994 Probable molybdopterin binding domain BRM88_RS16655 PF00872 Transposase, Mutator family BRM88_RS16660 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS16660 PF00593 TonB dependent receptor BRM88_RS16685 PF04616 Glycosyl hydrolases family 43 BRM88_RS16690 PF07532 Bacterial Ig-like domain (group 4) BRM88_RS16695 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS16695 PF00593 TonB dependent receptor BRM88_RS16705 PF09286 Pro-kumamolisin, activation domain BRM88_RS16705 PF00082 Subtilase family BRM88_RS16745 PF13520 Amino acid permease BRM88_RS16760 PF01321 Creatinase/Prolidase N-terminal domain BRM88_RS16760 PF00557 Metallopeptidase family M24 BRM88_RS16765 PF00171 Aldehyde dehydrogenase family BRM88_RS16770 PF00701 Dihydrodipicolinate synthetase family BRM88_RS16775 PF04324 BFD-like [2Fe-2S] binding domain BRM88_RS16775 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_RS16785 PF01266 FAD dependent oxidoreductase BRM88_RS16790 PF05544 Proline racemase BRM88_RS16800 PF00448 SRP54-type protein, GTPase domain BRM88_RS16800 PF02881 SRP54-type protein, helical bundle domain BRM88_RS16815 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM88_RS16815 PF14815 NUDIX domain BRM88_RS16815 PF00633 Helix-hairpin-helix motif BRM88_RS16820 PF04362 Bacterial Fe(2+) trafficking BRM88_RS16825 PF00072 Response regulator receiver domain BRM88_RS16825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS16825 PF13426 PAS domain BRM88_RS16915 PF08212 Lipocalin-like domain BRM88_RS16945 PF03808 Glycosyl transferase WecB/TagA/CpsF family BRM88_RS16960 PF14667 Polysaccharide biosynthesis C-terminal domain BRM88_RS16970 PF13439 Glycosyltransferase Family 4 BRM88_RS16970 PF00534 Glycosyl transferases group 1 BRM88_RS16990 PF02397 Bacterial sugar transferase BRM88_RS17010 PF13411 MerR HTH family regulatory protein BRM88_RS17015 PF00216 Bacterial DNA-binding protein BRM88_RS17020 PF03484 tRNA synthetase B5 domain BRM88_RS17020 PF03147 Ferredoxin-fold anticodon binding domain BRM88_RS17020 PF01588 Putative tRNA binding domain BRM88_RS17020 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BRM88_RS17020 PF03483 B3/4 domain BRM88_RS17025 PF01409 tRNA synthetases class II core domain (F) BRM88_RS17025 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BRM88_RS17030 PF00453 Ribosomal protein L20 BRM88_RS17035 PF01632 Ribosomal protein L35 BRM88_RS17040 PF05198 Translation initiation factor IF-3, N-terminal domain BRM88_RS17040 PF00707 Translation initiation factor IF-3, C-terminal domain BRM88_RS17045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRM88_RS17045 PF03129 Anticodon binding domain BRM88_RS17045 PF02824 TGS domain BRM88_RS17045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BRM88_RS17075 PF00271 Helicase conserved C-terminal domain BRM88_RS17075 PF02151 UvrB/uvrC motif BRM88_RS17075 PF17757 UvrB interaction domain BRM88_RS17075 PF12344 Ultra-violet resistance protein B BRM88_RS17075 PF04851 Type III restriction enzyme, res subunit BRM88_RS17080 PF07963 Prokaryotic N-terminal methylation motif BRM88_RS17080 PF00114 Pilin (bacterial filament) BRM88_RS17090 PF07963 Prokaryotic N-terminal methylation motif BRM88_RS17090 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor BRM88_RS17095 PF05567 Neisseria PilC beta-propeller domain BRM88_RS17115 PF07963 Prokaryotic N-terminal methylation motif BRM88_RS17115 PF12019 Type II transport protein GspH BRM88_RS17120 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BRM88_RS17120 PF03641 Possible lysine decarboxylase BRM88_RS17120 PF11892 Domain of unknown function (DUF3412) BRM88_RS17125 PF00593 TonB dependent receptor BRM88_RS17135 PF01914 MarC family integral membrane protein BRM88_RS17145 PF00462 Glutaredoxin BRM88_RS17150 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRM88_RS17150 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRM88_RS17155 PF02222 ATP-grasp domain BRM88_RS17155 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BRM88_RS17160 PF00731 AIR carboxylase BRM88_RS17170 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BRM88_RS17170 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BRM88_RS17180 PF00575 S1 RNA binding domain BRM88_RS17180 PF03725 3' exoribonuclease family, domain 2 BRM88_RS17180 PF01138 3' exoribonuclease family, domain 1 BRM88_RS17180 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BRM88_RS17180 PF00013 KH domain BRM88_RS17185 PF00312 Ribosomal protein S15 BRM88_RS17190 PF09157 Pseudouridine synthase II TruB, C-terminal BRM88_RS17190 PF16198 tRNA pseudouridylate synthase B C-terminal domain BRM88_RS17190 PF01509 TruB family pseudouridylate synthase (N terminal domain) BRM88_RS17195 PF02033 Ribosome-binding factor A BRM88_RS17200 PF04760 Translation initiation factor IF-2, N-terminal region BRM88_RS17200 PF00009 Elongation factor Tu GTP binding domain BRM88_RS17200 PF08364 Bacterial translation initiation factor IF-2 associated region BRM88_RS17200 PF11987 Translation-initiation factor 2 BRM88_RS17205 PF13184 NusA-like KH domain BRM88_RS17205 PF00575 S1 RNA binding domain BRM88_RS17205 PF08529 NusA N-terminal domain BRM88_RS17210 PF02576 RimP N-terminal domain BRM88_RS17210 PF17384 RimP C-terminal SH3 domain BRM88_RS17220 PF00361 Proton-conducting membrane transporter BRM88_RS17225 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BRM88_RS17225 PF00361 Proton-conducting membrane transporter BRM88_RS17230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRM88_RS17230 PF00361 Proton-conducting membrane transporter BRM88_RS17235 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BRM88_RS17240 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BRM88_RS17245 PF12838 4Fe-4S dicluster domain BRM88_RS17250 PF00146 NADH dehydrogenase BRM88_RS17255 PF00384 Molybdopterin oxidoreductase BRM88_RS17255 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BRM88_RS17255 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BRM88_RS17260 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BRM88_RS17260 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BRM88_RS17260 PF10531 SLBB domain BRM88_RS17270 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BRM88_RS17275 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BRM88_RS17280 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BRM88_RS17285 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BRM88_RS17300 PF00121 Triosephosphate isomerase BRM88_RS17335 PF00563 EAL domain BRM88_RS17335 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS17335 PF03707 Bacterial signalling protein N terminal repeat BRM88_RS17350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRM88_RS17350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRM88_RS17350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRM88_RS17350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRM88_RS17355 PF17848 Acetyl-coA carboxylase zinc finger domain BRM88_RS17355 PF01039 Carboxyl transferase domain BRM88_RS17360 PF00290 Tryptophan synthase alpha chain BRM88_RS17370 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_RS17375 PF03466 LysR substrate binding domain BRM88_RS17375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS17380 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BRM88_RS17385 PF01416 tRNA pseudouridine synthase BRM88_RS17405 PF01118 Semialdehyde dehydrogenase, NAD binding domain BRM88_RS17405 PF02774 Semialdehyde dehydrogenase, dimerisation domain BRM88_RS17410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRM88_RS17410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRM88_RS17415 PF01264 Chorismate synthase BRM88_RS17420 PF05175 Methyltransferase small domain BRM88_RS17425 PF02630 SCO1/SenC BRM88_RS17430 PF02666 Phosphatidylserine decarboxylase BRM88_RS17475 PF01272 Transcription elongation factor, GreA/GreB, C-term BRM88_RS17475 PF03449 Transcription elongation factor, N-terminal BRM88_RS17480 PF04055 Radical SAM superfamily BRM88_RS17480 PF00919 Uncharacterized protein family UPF0004 BRM88_RS17480 PF18693 TRAM domain BRM88_RS17485 PF01738 Dienelactone hydrolase family BRM88_RS17505 PF00692 dUTPase BRM88_RS17510 PF10609 NUBPL iron-transfer P-loop NTPase BRM88_RS17555 PF01266 FAD dependent oxidoreductase BRM88_RS17560 PF04235 Protein of unknown function (DUF418) BRM88_RS17565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_RS17570 PF00877 NlpC/P60 family BRM88_RS17575 PF00877 NlpC/P60 family BRM88_RS17590 PF00375 Sodium:dicarboxylate symporter family BRM88_RS17595 PF00245 Alkaline phosphatase BRM88_RS17600 PF09179 TilS substrate binding domain BRM88_RS17600 PF01171 PP-loop family BRM88_RS17600 PF11734 TilS substrate C-terminal domain BRM88_RS17605 PF02609 Exonuclease VII small subunit BRM88_RS17610 PF00348 Polyprenyl synthetase BRM88_RS17635 PF01523 Putative modulator of DNA gyrase BRM88_RS17640 PF04751 Protein of unknown function (DUF615) BRM88_RS17645 PF01523 Putative modulator of DNA gyrase BRM88_RS17655 PF13116 Protein of unknown function BRM88_RS17655 PF13502 AsmA-like C-terminal region BRM88_RS17660 PF10150 Ribonuclease E/G family BRM88_RS17660 PF00575 S1 RNA binding domain BRM88_RS17665 PF02545 Maf-like protein BRM88_RS17670 PF04402 Protein of unknown function (DUF541) BRM88_RS17695 PF02590 Predicted SPOUT methyltransferase BRM88_RS17720 PF01467 Cytidylyltransferase-like BRM88_RS17740 PF08264 Anticodon-binding domain of tRNA BRM88_RS17740 PF00133 tRNA synthetases class I (I, L, M and V) BRM88_RS17740 PF13603 Leucyl-tRNA synthetase, Domain 2 BRM88_RS17750 PF00085 Thioredoxin BRM88_RS17830 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_RS17830 PF00128 Alpha amylase, catalytic domain BRM88_RS17835 PF05598 Transposase domain (DUF772) BRM88_RS17835 PF01609 Transposase DDE domain BRM88_RS17840 PF05598 Transposase domain (DUF772) BRM88_RS17840 PF01609 Transposase DDE domain BRM88_RS17920 PF03797 Autotransporter beta-domain BRM88_RS17920 PF00657 GDSL-like Lipase/Acylhydrolase BRM88_RS17935 PF05690 Thiazole biosynthesis protein ThiG BRM88_RS17945 PF02390 Putative methyltransferase BRM88_RS17950 PF02080 TrkA-C domain BRM88_RS17950 PF03600 Citrate transporter BRM88_RS17975 PF01557 Fumarylacetoacetate (FAA) hydrolase family BRM88_RS17980 PF01741 Large-conductance mechanosensitive channel, MscL BRM88_RS18005 PF08032 RNA 2'-O ribose methyltransferase substrate binding BRM88_RS18005 PF00588 SpoU rRNA Methylase family BRM88_RS18035 PF01433 Peptidase family M1 domain BRM88_RS18035 PF11838 ERAP1-like C-terminal domain BRM88_RS18040 PF00873 AcrB/AcrD/AcrF family BRM88_RS18045 PF00529 HlyD membrane-fusion protein of T1SS BRM88_RS18045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_RS18055 PF00009 Elongation factor Tu GTP binding domain BRM88_RS18060 PF01507 Phosphoadenosine phosphosulfate reductase family BRM88_RS18065 PF00175 Oxidoreductase NAD-binding domain BRM88_RS18065 PF00258 Flavodoxin BRM88_RS18065 PF00667 FAD binding domain BRM88_RS18070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BRM88_RS18070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BRM88_RS18075 PF01507 Phosphoadenosine phosphosulfate reductase family BRM88_RS18095 PF00672 HAMP domain BRM88_RS18095 PF01627 Hpt domain BRM88_RS18095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS18095 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS18095 PF00072 Response regulator receiver domain BRM88_RS18120 PF03466 LysR substrate binding domain BRM88_RS18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS18125 PF10414 Sirohaem synthase dimerisation region BRM88_RS18125 PF14824 Sirohaem biosynthesis protein central BRM88_RS18125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRM88_RS18130 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_RS18140 PF01661 Macro domain BRM88_RS18145 PF00274 Fructose-bisphosphate aldolase class-I BRM88_RS18150 PF02887 Pyruvate kinase, alpha/beta domain BRM88_RS18150 PF00224 Pyruvate kinase, barrel domain BRM88_RS18155 PF13419 Haloacid dehalogenase-like hydrolase BRM88_RS18160 PF00162 Phosphoglycerate kinase BRM88_RS18195 PF06628 Catalase-related immune-responsive BRM88_RS18195 PF18011 C-terminal domain found in long catalases BRM88_RS18195 PF00199 Catalase BRM88_RS18220 PF05598 Transposase domain (DUF772) BRM88_RS18220 PF01609 Transposase DDE domain BRM88_RS18240 PF02311 AraC-like ligand binding domain BRM88_RS18240 PF12833 Helix-turn-helix domain BRM88_RS18270 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BRM88_RS18270 PF07676 WD40-like Beta Propeller Repeat BRM88_RS18270 PF00326 Prolyl oligopeptidase family BRM88_RS18295 PF01609 Transposase DDE domain BRM88_RS18295 PF05598 Transposase domain (DUF772) BRM88_RS18300 PF03169 OPT oligopeptide transporter protein BRM88_RS18320 PF02811 PHP domain BRM88_RS18320 PF14579 Helix-hairpin-helix motif BRM88_RS18320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BRM88_RS18320 PF07733 Bacterial DNA polymerase III alpha NTPase domain BRM88_RS18340 PF01726 LexA DNA binding domain BRM88_RS18340 PF00717 Peptidase S24-like BRM88_RS18370 PF00300 Histidine phosphatase superfamily (branch 1) BRM88_RS18370 PF13456 Reverse transcriptase-like BRM88_RS18405 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BRM88_RS18405 PF18766 SWI2/SNF2 ATPase BRM88_RS18405 PF11867 Domain of unknown function (DUF3387) BRM88_RS18425 PF05598 Transposase domain (DUF772) BRM88_RS18425 PF01609 Transposase DDE domain BRM88_RS18430 PF01420 Type I restriction modification DNA specificity domain BRM88_RS18435 PF01609 Transposase DDE domain BRM88_RS18435 PF05598 Transposase domain (DUF772) BRM88_RS18445 PF08780 Nucleotidyltransferase substrate binding protein like BRM88_RS18450 PF02384 N-6 DNA Methylase BRM88_RS18470 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BRM88_RS18470 PF08463 EcoEI R protein C-terminal BRM88_RS18470 PF00271 Helicase conserved C-terminal domain BRM88_RS18470 PF04851 Type III restriction enzyme, res subunit BRM88_RS18480 PF02384 N-6 DNA Methylase BRM88_RS18490 PF01420 Type I restriction modification DNA specificity domain BRM88_RS18585 PF06715 Gp5 C-terminal repeat (3 copies) BRM88_RS18585 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS18595 PF17871 AAA lid domain BRM88_RS18595 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_RS18595 PF07724 AAA domain (Cdc48 subfamily) BRM88_RS18595 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_RS18605 PF05947 Type VI secretion system, TssF BRM88_RS18620 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath BRM88_RS18625 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 BRM88_RS18650 PF13296 Putative type VI secretion system Rhs element Vgr BRM88_RS18650 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS18650 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BRM88_RS18685 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS18690 PF03781 Sulfatase-modifying factor enzyme 1 BRM88_RS18740 PF06715 Gp5 C-terminal repeat (3 copies) BRM88_RS18740 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS18755 PF04972 BON domain BRM88_RS18755 PF00691 OmpA family BRM88_RS18795 PF02222 ATP-grasp domain BRM88_RS18820 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM88_RS18835 PF00072 Response regulator receiver domain BRM88_RS18835 PF00196 Bacterial regulatory proteins, luxR family BRM88_RS18840 PF07730 Histidine kinase BRM88_RS18855 PF03775 Septum formation inhibitor MinC, C-terminal domain BRM88_RS18855 PF05209 Septum formation inhibitor MinC, N-terminal domain BRM88_RS18860 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BRM88_RS18865 PF03776 Septum formation topological specificity factor MinE BRM88_RS18875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS18875 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS18875 PF08521 Two-component sensor kinase N-terminal BRM88_RS18880 PF00072 Response regulator receiver domain BRM88_RS18880 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS18885 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BRM88_RS18895 PF08019 Phosphoethanolamine transferase EptA/EptB BRM88_RS18895 PF00884 Sulfatase BRM88_RS18915 PF00005 ABC transporter BRM88_RS18915 PF03412 Peptidase C39 family BRM88_RS18915 PF00664 ABC transporter transmembrane region BRM88_RS18935 PF02347 Glycine cleavage system P-protein BRM88_RS18990 PF01196 Ribosomal protein L17 BRM88_RS18995 PF01000 RNA polymerase Rpb3/RpoA insert domain BRM88_RS18995 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BRM88_RS18995 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BRM88_RS19000 PF01479 S4 domain BRM88_RS19000 PF00163 Ribosomal protein S4/S9 N-terminal domain BRM88_RS19005 PF00411 Ribosomal protein S11 BRM88_RS19010 PF00416 Ribosomal protein S13/S18 BRM88_RS19015 PF00344 SecY translocase BRM88_RS19020 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BRM88_RS19025 PF00327 Ribosomal protein L30p/L7e BRM88_RS19030 PF03719 Ribosomal protein S5, C-terminal domain BRM88_RS19030 PF00333 Ribosomal protein S5, N-terminal domain BRM88_RS19035 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BRM88_RS19040 PF00347 Ribosomal protein L6 BRM88_RS19045 PF00410 Ribosomal protein S8 BRM88_RS19050 PF00253 Ribosomal protein S14p/S29e BRM88_RS19055 PF00673 ribosomal L5P family C-terminus BRM88_RS19055 PF00281 Ribosomal protein L5 BRM88_RS19060 PF00467 KOW motif BRM88_RS19060 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BRM88_RS19065 PF00238 Ribosomal protein L14p/L23e BRM88_RS19070 PF00366 Ribosomal protein S17 BRM88_RS19075 PF00831 Ribosomal L29 protein BRM88_RS19080 PF00252 Ribosomal protein L16p/L10e BRM88_RS19085 PF00189 Ribosomal protein S3, C-terminal domain BRM88_RS19085 PF07650 KH domain BRM88_RS19090 PF00237 Ribosomal protein L22p/L17e BRM88_RS19095 PF00203 Ribosomal protein S19 BRM88_RS19100 PF03947 Ribosomal Proteins L2, C-terminal domain BRM88_RS19100 PF00181 Ribosomal Proteins L2, RNA binding domain BRM88_RS19105 PF00276 Ribosomal protein L23 BRM88_RS19110 PF00573 Ribosomal protein L4/L1 family BRM88_RS19115 PF00297 Ribosomal protein L3 BRM88_RS19120 PF00338 Ribosomal protein S10p/S20e BRM88_RS19135 PF03143 Elongation factor Tu C-terminal domain BRM88_RS19135 PF00009 Elongation factor Tu GTP binding domain BRM88_RS19135 PF03144 Elongation factor Tu domain 2 BRM88_RS19140 PF03144 Elongation factor Tu domain 2 BRM88_RS19140 PF00679 Elongation factor G C-terminus BRM88_RS19140 PF14492 Elongation Factor G, domain II BRM88_RS19140 PF00009 Elongation factor Tu GTP binding domain BRM88_RS19140 PF03764 Elongation factor G, domain IV BRM88_RS19145 PF00177 Ribosomal protein S7p/S5e BRM88_RS19150 PF00164 Ribosomal protein S12/S23 BRM88_RS19155 PF00623 RNA polymerase Rpb1, domain 2 BRM88_RS19155 PF04998 RNA polymerase Rpb1, domain 5 BRM88_RS19155 PF05000 RNA polymerase Rpb1, domain 4 BRM88_RS19155 PF04983 RNA polymerase Rpb1, domain 3 BRM88_RS19155 PF04997 RNA polymerase Rpb1, domain 1 BRM88_RS19160 PF04560 RNA polymerase Rpb2, domain 7 BRM88_RS19160 PF04565 RNA polymerase Rpb2, domain 3 BRM88_RS19160 PF00562 RNA polymerase Rpb2, domain 6 BRM88_RS19160 PF04563 RNA polymerase beta subunit BRM88_RS19160 PF04561 RNA polymerase Rpb2, domain 2 BRM88_RS19160 PF10385 RNA polymerase beta subunit external 1 domain BRM88_RS19165 PF00542 Ribosomal protein L7/L12 C-terminal domain BRM88_RS19165 PF16320 Ribosomal protein L7/L12 dimerisation domain BRM88_RS19170 PF00466 Ribosomal protein L10 BRM88_RS19175 PF00687 Ribosomal protein L1p/L10e family BRM88_RS19180 PF03946 Ribosomal protein L11, N-terminal domain BRM88_RS19180 PF00298 Ribosomal protein L11, RNA binding domain BRM88_RS19190 PF02357 Transcription termination factor nusG BRM88_RS19190 PF00467 KOW motif BRM88_RS19195 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BRM88_RS19205 PF03144 Elongation factor Tu domain 2 BRM88_RS19205 PF03143 Elongation factor Tu C-terminal domain BRM88_RS19205 PF00009 Elongation factor Tu GTP binding domain BRM88_RS19225 PF01926 50S ribosome-binding GTPase BRM88_RS19225 PF06071 Protein of unknown function (DUF933) BRM88_RS19230 PF01195 Peptidyl-tRNA hydrolase BRM88_RS19235 PF14693 Ribosomal protein TL5, C-terminal domain BRM88_RS19235 PF01386 Ribosomal L25p family BRM88_RS19240 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BRM88_RS19240 PF14572 Phosphoribosyl synthetase-associated domain BRM88_RS19250 PF00288 GHMP kinases N terminal domain BRM88_RS19250 PF08544 GHMP kinases C terminal BRM88_RS19255 PF03550 Outer membrane lipoprotein LolB BRM88_RS19265 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BRM88_RS19265 PF01488 Shikimate / quinate 5-dehydrogenase BRM88_RS19265 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BRM88_RS19270 PF00472 RF-1 domain BRM88_RS19270 PF03462 PCRF domain BRM88_RS19280 PF00994 Probable molybdopterin binding domain BRM88_RS19285 PF03976 Polyphosphate kinase 2 (PPK2) BRM88_RS19295 PF00708 Acylphosphatase BRM88_RS19300 PF08534 Redoxin BRM88_RS19305 PF03631 Virulence factor BrkB BRM88_RS19310 PF03358 NADPH-dependent FMN reductase BRM88_RS19325 PF17189 Glycosyl hydrolase family 30 beta sandwich domain BRM88_RS19325 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain BRM88_RS19335 PF04073 Aminoacyl-tRNA editing domain BRM88_RS19345 PF01063 Amino-transferase class IV BRM88_RS19375 PF02233 NAD(P) transhydrogenase beta subunit BRM88_RS19380 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BRM88_RS19400 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BRM88_RS19400 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BRM88_RS19400 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BRM88_RS19415 PF01612 3'-5' exonuclease BRM88_RS19415 PF00476 DNA polymerase family A BRM88_RS19415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BRM88_RS19415 PF01367 5'-3' exonuclease, C-terminal SAM fold BRM88_RS19420 PF00293 NUDIX domain BRM88_RS19430 PF00561 alpha/beta hydrolase fold BRM88_RS19465 PF05175 Methyltransferase small domain BRM88_RS19465 PF17827 PrmC N-terminal domain BRM88_RS19470 PF10417 C-terminal domain of 1-Cys peroxiredoxin BRM88_RS19470 PF00578 AhpC/TSA family BRM88_RS19475 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_RS19475 PF13192 Thioredoxin domain BRM88_RS19480 PF03466 LysR substrate binding domain BRM88_RS19480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS19490 PF01272 Transcription elongation factor, GreA/GreB, C-term BRM88_RS19490 PF03449 Transcription elongation factor, N-terminal BRM88_RS19495 PF00923 Transaldolase/Fructose-6-phosphate aldolase BRM88_RS19530 PF01625 Peptide methionine sulfoxide reductase BRM88_RS19565 PF00462 Glutaredoxin BRM88_RS19570 PF13181 Tetratricopeptide repeat BRM88_RS19570 PF01435 Peptidase family M48 BRM88_RS19575 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS19575 PF00072 Response regulator receiver domain BRM88_RS19580 PF11808 Phosphate regulon sensor protein PhoR BRM88_RS19580 PF00989 PAS fold BRM88_RS19580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS19580 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS19585 PF02503 Polyphosphate kinase middle domain BRM88_RS19585 PF13090 Polyphosphate kinase C-terminal domain 2 BRM88_RS19585 PF17941 Polyphosphate kinase C-terminal domain 1 BRM88_RS19585 PF13089 Polyphosphate kinase N-terminal domain BRM88_RS19590 PF02541 Ppx/GppA phosphatase family BRM88_RS19595 PF13439 Glycosyltransferase Family 4 BRM88_RS19595 PF00534 Glycosyl transferases group 1 BRM88_RS19600 PF01569 PAP2 superfamily BRM88_RS19605 PF00149 Calcineurin-like phosphoesterase BRM88_RS19625 PF04305 Protein of unknown function (DUF455) BRM88_RS19630 PF00156 Phosphoribosyl transferase domain BRM88_RS19645 PF02875 Mur ligase family, glutamate ligase domain BRM88_RS19645 PF08245 Mur ligase middle domain BRM88_RS19655 PF00300 Histidine phosphatase superfamily (branch 1) BRM88_RS19660 PF10459 Peptidase S46 BRM88_RS19680 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_RS19680 PF00107 Zinc-binding dehydrogenase BRM88_RS19690 PF00005 ABC transporter BRM88_RS19690 PF17850 CysA C-terminal regulatory domain BRM88_RS19690 PF12857 TOBE-like domain BRM88_RS19695 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS19700 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS19710 PF00155 Aminotransferase class I and II BRM88_RS19720 PF00849 RNA pseudouridylate synthase BRM88_RS19730 PF05736 OprF membrane domain BRM88_RS19730 PF00691 OmpA family BRM88_RS19740 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_RS19740 PF00107 Zinc-binding dehydrogenase BRM88_RS19745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRM88_RS19745 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_RS19790 PF00072 Response regulator receiver domain BRM88_RS19790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS19790 PF00672 HAMP domain BRM88_RS19790 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM88_RS19790 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS19790 PF01627 Hpt domain BRM88_RS19795 PF00072 Response regulator receiver domain BRM88_RS19795 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS19815 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BRM88_RS19815 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRM88_RS19875 PF01728 FtsJ-like methyltransferase BRM88_RS19875 PF18125 RlmM ferredoxin-like domain BRM88_RS19880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRM88_RS19880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BRM88_RS19885 PF08450 SMP-30/Gluconolactonase/LRE-like region BRM88_RS19905 PF00378 Enoyl-CoA hydratase/isomerase BRM88_RS19910 PF00171 Aldehyde dehydrogenase family BRM88_RS19915 PF13193 AMP-binding enzyme C-terminal domain BRM88_RS19915 PF00501 AMP-binding enzyme BRM88_RS19920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS19920 PF03466 LysR substrate binding domain BRM88_RS19930 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BRM88_RS19960 PF01494 FAD binding domain BRM88_RS19965 PF01494 FAD binding domain BRM88_RS19975 PF01923 Cobalamin adenosyltransferase BRM88_RS19980 PF00850 Histone deacetylase domain BRM88_RS19985 PF04453 LPS transport system D BRM88_RS19985 PF03968 OstA-like protein BRM88_RS19990 PF00639 PPIC-type PPIASE domain BRM88_RS19990 PF09312 SurA N-terminal domain BRM88_RS19995 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BRM88_RS20005 PF00398 Ribosomal RNA adenine dimethylase BRM88_RS20010 PF04379 ApaG domain BRM88_RS20015 PF00149 Calcineurin-like phosphoesterase BRM88_RS20020 PF00186 Dihydrofolate reductase BRM88_RS20030 PF00303 Thymidylate synthase BRM88_RS20035 PF01790 Prolipoprotein diacylglyceryl transferase BRM88_RS20055 PF01219 Prokaryotic diacylglycerol kinase BRM88_RS20080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS20080 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS20080 PF08521 Two-component sensor kinase N-terminal BRM88_RS20090 PF13472 GDSL-like Lipase/Acylhydrolase family BRM88_RS20095 PF00005 ABC transporter BRM88_RS20105 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BRM88_RS20115 PF00005 ABC transporter BRM88_RS20155 PF00248 Aldo/keto reductase family BRM88_RS20165 PF07662 Na+ dependent nucleoside transporter C-terminus BRM88_RS20165 PF07670 Nucleoside recognition BRM88_RS20165 PF01773 Na+ dependent nucleoside transporter N-terminus BRM88_RS20170 PF00294 pfkB family carbohydrate kinase BRM88_RS20190 PF01207 Dihydrouridine synthase (Dus) BRM88_RS20205 PF02773 S-adenosylmethionine synthetase, C-terminal domain BRM88_RS20205 PF00438 S-adenosylmethionine synthetase, N-terminal domain BRM88_RS20205 PF02772 S-adenosylmethionine synthetase, central domain BRM88_RS20215 PF00328 Histidine phosphatase superfamily (branch 2) BRM88_RS20250 PF00311 Phosphoenolpyruvate carboxylase BRM88_RS20260 PF05221 S-adenosyl-L-homocysteine hydrolase BRM88_RS20260 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BRM88_RS20265 PF13649 Methyltransferase domain BRM88_RS20300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRM88_RS20315 PF00082 Subtilase family BRM88_RS20315 PF09286 Pro-kumamolisin, activation domain BRM88_RS20320 PF00107 Zinc-binding dehydrogenase BRM88_RS20320 PF00550 Phosphopantetheine attachment site BRM88_RS20320 PF00698 Acyl transferase domain BRM88_RS20320 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM88_RS20320 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM88_RS20320 PF16197 Ketoacyl-synthetase C-terminal extension BRM88_RS20320 PF14765 Polyketide synthase dehydratase BRM88_RS20320 PF08659 KR domain BRM88_RS20320 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_RS20335 PF02219 Methylenetetrahydrofolate reductase BRM88_RS20350 PF00293 NUDIX domain BRM88_RS20360 PF02810 SEC-C motif BRM88_RS20360 PF07517 SecA DEAD-like domain BRM88_RS20360 PF01043 SecA preprotein cross-linking domain BRM88_RS20360 PF07516 SecA Wing and Scaffold domain BRM88_RS20365 PF01476 LysM domain BRM88_RS20365 PF01551 Peptidase family M23 BRM88_RS20375 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BRM88_RS20380 PF12327 FtsZ family, C-terminal domain BRM88_RS20380 PF00091 Tubulin/FtsZ family, GTPase domain BRM88_RS20385 PF02491 SHS2 domain inserted in FTSA BRM88_RS20390 PF03799 Cell division protein FtsQ BRM88_RS20390 PF08478 POTRA domain, FtsQ-type BRM88_RS20395 PF01820 D-ala D-ala ligase N-terminus BRM88_RS20395 PF07478 D-ala D-ala ligase C-terminus BRM88_RS20400 PF08245 Mur ligase middle domain BRM88_RS20400 PF01225 Mur ligase family, catalytic domain BRM88_RS20400 PF02875 Mur ligase family, glutamate ligase domain BRM88_RS20405 PF04101 Glycosyltransferase family 28 C-terminal domain BRM88_RS20405 PF03033 Glycosyltransferase family 28 N-terminal domain BRM88_RS20410 PF01098 Cell cycle protein BRM88_RS20415 PF00953 Glycosyl transferase family 4 BRM88_RS20420 PF01225 Mur ligase family, catalytic domain BRM88_RS20420 PF08245 Mur ligase middle domain BRM88_RS20420 PF02875 Mur ligase family, glutamate ligase domain BRM88_RS20425 PF01225 Mur ligase family, catalytic domain BRM88_RS20425 PF08245 Mur ligase middle domain BRM88_RS20425 PF02875 Mur ligase family, glutamate ligase domain BRM88_RS20430 PF03717 Penicillin-binding Protein dimerisation domain BRM88_RS20430 PF00905 Penicillin binding protein transpeptidase domain BRM88_RS20435 PF04999 Cell division protein FtsL BRM88_RS20440 PF01795 MraW methylase family BRM88_RS20445 PF02381 MraZ protein, putative antitoxin-like BRM88_RS20465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRM88_RS20475 PF02021 Uncharacterised protein family UPF0102 BRM88_RS20480 PF04307 LexA-binding, inner membrane-associated putative hydrolase BRM88_RS20485 PF02913 FAD linked oxidases, C-terminal domain BRM88_RS20485 PF01565 FAD binding domain BRM88_RS20490 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS20490 PF00072 Response regulator receiver domain BRM88_RS20495 PF02702 Osmosensitive K+ channel His kinase sensor domain BRM88_RS20495 PF13492 GAF domain BRM88_RS20495 PF13493 Domain of unknown function (DUF4118) BRM88_RS20495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS20495 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS20500 PF02669 K+-transporting ATPase, c chain BRM88_RS20510 PF03814 Potassium-transporting ATPase A subunit BRM88_RS20535 PF02769 AIR synthase related protein, C-terminal domain BRM88_RS20535 PF00586 AIR synthase related protein, N-terminal domain BRM88_RS20540 PF01029 NusB family BRM88_RS20545 PF00885 6,7-dimethyl-8-ribityllumazine synthase BRM88_RS20550 PF00925 GTP cyclohydrolase II BRM88_RS20550 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BRM88_RS20555 PF00677 Lumazine binding domain BRM88_RS20565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BRM88_RS20565 PF01872 RibD C-terminal domain BRM88_RS20575 PF03477 ATP cone domain BRM88_RS20585 PF00464 Serine hydroxymethyltransferase BRM88_RS20605 PF12848 ABC transporter BRM88_RS20605 PF00005 ABC transporter BRM88_RS20625 PF00756 Putative esterase BRM88_RS20635 PF00107 Zinc-binding dehydrogenase BRM88_RS20635 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_RS20640 PF02583 Metal-sensitive transcriptional repressor BRM88_RS20650 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS20650 PF00072 Response regulator receiver domain BRM88_RS20655 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS20655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS20655 PF00672 HAMP domain BRM88_RS20655 PF16527 Two-component sensor protein CpxA, periplasmic domain BRM88_RS20695 PF00672 HAMP domain BRM88_RS20695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS20695 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS20700 PF04107 Glutamate-cysteine ligase family 2(GCS2) BRM88_RS20715 PF01926 50S ribosome-binding GTPase BRM88_RS20720 PF00034 Cytochrome c BRM88_RS20750 PF01609 Transposase DDE domain BRM88_RS20750 PF05598 Transposase domain (DUF772) BRM88_RS20755 PF13291 ACT domain BRM88_RS20755 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_RS20770 PF05598 Transposase domain (DUF772) BRM88_RS20770 PF01609 Transposase DDE domain BRM88_RS20780 PF05598 Transposase domain (DUF772) BRM88_RS20780 PF01609 Transposase DDE domain BRM88_RS20790 PF01527 Transposase BRM88_RS20820 PF12627 Probable RNA and SrmB- binding site of polymerase A BRM88_RS20820 PF01743 Poly A polymerase head domain BRM88_RS20820 PF01966 HD domain BRM88_RS20835 PF01609 Transposase DDE domain BRM88_RS20835 PF05598 Transposase domain (DUF772) BRM88_RS20885 PF01522 Polysaccharide deacetylase BRM88_RS20885 PF14883 Hypothetical glycosyl hydrolase family 13 BRM88_RS20890 PF00535 Glycosyl transferase family 2 BRM88_RS20900 PF01979 Amidohydrolase family BRM88_RS20905 PF01380 SIS domain BRM88_RS20910 PF00356 Bacterial regulatory proteins, lacI family BRM88_RS20915 PF07690 Major Facilitator Superfamily BRM88_RS20920 PF07702 UTRA domain BRM88_RS20920 PF00392 Bacterial regulatory proteins, gntR family BRM88_RS20935 PF16355 Domain of unknown function (DUF4982) BRM88_RS20935 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BRM88_RS20935 PF02837 Glycosyl hydrolases family 2, sugar binding domain BRM88_RS20935 PF00703 Glycosyl hydrolases family 2 BRM88_RS20935 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BRM88_RS20990 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BRM88_RS20995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS20995 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS21000 PF00072 Response regulator receiver domain BRM88_RS21005 PF01590 GAF domain BRM88_RS21005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS21005 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS21005 PF08446 PAS fold BRM88_RS21005 PF00360 Phytochrome region BRM88_RS21010 PF04972 BON domain BRM88_RS21015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BRM88_RS21015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRM88_RS21020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRM88_RS21020 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BRM88_RS21055 PF00293 NUDIX domain BRM88_RS21055 PF01467 Cytidylyltransferase-like BRM88_RS21065 PF11818 C-terminal domain of tail specific protease (DUF3340) BRM88_RS21065 PF00595 PDZ domain BRM88_RS21065 PF03572 Peptidase family S41 BRM88_RS21065 PF17804 Tail specific protease N-terminal domain BRM88_RS21075 PF07669 Eco57I restriction-modification methylase BRM88_RS21075 PF12950 TaqI-like C-terminal specificity domain BRM88_RS21080 PF04055 Radical SAM superfamily BRM88_RS21080 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BRM88_RS21085 PF03099 Biotin/lipoate A/B protein ligase family BRM88_RS21090 PF04359 Protein of unknown function (DUF493) BRM88_RS21105 PF07943 Penicillin-binding protein 5, C-terminal domain BRM88_RS21105 PF00768 D-alanyl-D-alanine carboxypeptidase BRM88_RS21115 PF05036 Sporulation related domain BRM88_RS21115 PF03330 Lytic transglycolase BRM88_RS21120 PF13406 Transglycosylase SLT domain BRM88_RS21135 PF01471 Putative peptidoglycan binding domain BRM88_RS21135 PF01510 N-acetylmuramoyl-L-alanine amidase BRM88_RS21135 PF01476 LysM domain BRM88_RS21150 PF13296 Putative type VI secretion system Rhs element Vgr BRM88_RS21150 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) BRM88_RS21150 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS21165 PF04717 Type VI secretion system, phage-baseplate injector BRM88_RS21180 PF01098 Cell cycle protein BRM88_RS21185 PF03717 Penicillin-binding Protein dimerisation domain BRM88_RS21185 PF00905 Penicillin binding protein transpeptidase domain BRM88_RS21195 PF04085 rod shape-determining protein MreC BRM88_RS21205 PF00294 pfkB family carbohydrate kinase BRM88_RS21225 PF13673 Acetyltransferase (GNAT) domain BRM88_RS21235 PF13533 Biotin-lipoyl like BRM88_RS21245 PF01209 ubiE/COQ5 methyltransferase family BRM88_RS21250 PF08448 PAS fold BRM88_RS21250 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS21255 PF11838 ERAP1-like C-terminal domain BRM88_RS21255 PF01433 Peptidase family M1 domain BRM88_RS21270 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_RS21270 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_RS21270 PF07724 AAA domain (Cdc48 subfamily) BRM88_RS21275 PF00227 Proteasome subunit BRM88_RS21285 PF00589 Phage integrase family BRM88_RS21285 PF02899 Phage integrase, N-terminal SAM-like domain BRM88_RS21295 PF01678 Diaminopimelate epimerase BRM88_RS21310 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BRM88_RS21310 PF00326 Prolyl oligopeptidase family BRM88_RS21315 PF00155 Aminotransferase class I and II BRM88_RS21330 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BRM88_RS21330 PF00326 Prolyl oligopeptidase family BRM88_RS21355 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BRM88_RS21355 PF03900 Porphobilinogen deaminase, C-terminal domain BRM88_RS21360 PF00072 Response regulator receiver domain BRM88_RS21360 PF04397 LytTr DNA-binding domain BRM88_RS21365 PF06580 Histidine kinase BRM88_RS21365 PF07694 5TMR of 5TMR-LYT BRM88_RS21375 PF13632 Glycosyl transferase family group 2 BRM88_RS21410 PF01740 STAS domain BRM88_RS21410 PF00916 Sulfate permease family BRM88_RS21415 PF00553 Cellulose binding domain BRM88_RS21415 PF00150 Cellulase (glycosyl hydrolase family 5) BRM88_RS21430 PF03707 Bacterial signalling protein N terminal repeat BRM88_RS21430 PF00990 Diguanylate cyclase, GGDEF domain BRM88_RS21430 PF00563 EAL domain BRM88_RS21470 PF01204 Trehalase BRM88_RS21490 PF01544 CorA-like Mg2+ transporter protein BRM88_RS21500 PF00324 Amino acid permease BRM88_RS21510 PF00553 Cellulose binding domain BRM88_RS21510 PF00041 Fibronectin type III domain BRM88_RS21510 PF01341 Glycosyl hydrolases family 6 BRM88_RS21515 PF03330 Lytic transglycolase BRM88_RS21520 PF00892 EamA-like transporter family BRM88_RS21540 PF07759 Protein of unknown function (DUF1615) BRM88_RS21580 PF00106 short chain dehydrogenase BRM88_RS21600 PF00425 chorismate binding enzyme BRM88_RS21600 PF04715 Anthranilate synthase component I, N terminal region BRM88_RS21605 PF00781 Diacylglycerol kinase catalytic domain BRM88_RS21610 PF00583 Acetyltransferase (GNAT) family BRM88_RS21615 PF00834 Ribulose-phosphate 3 epimerase family BRM88_RS21620 PF05099 Tellurite resistance protein TerB BRM88_RS21620 PF00226 DnaJ domain BRM88_RS21625 PF01259 SAICAR synthetase BRM88_RS21675 PF13244 Domain of unknown function (DUF4040) BRM88_RS21675 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BRM88_RS21675 PF00361 Proton-conducting membrane transporter BRM88_RS21675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRM88_RS21680 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BRM88_RS21685 PF00361 Proton-conducting membrane transporter BRM88_RS21695 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BRM88_RS21700 PF03334 Na+/H+ antiporter subunit BRM88_RS21710 PF04209 homogentisate 1,2-dioxygenase BRM88_RS21715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRM88_RS21720 PF01047 MarR family BRM88_RS21730 PF00854 POT family BRM88_RS21735 PF03301 Tryptophan 2,3-dioxygenase BRM88_RS21745 PF00676 Dehydrogenase E1 component BRM88_RS21780 PF00108 Thiolase, N-terminal domain BRM88_RS21780 PF02803 Thiolase, C-terminal domain BRM88_RS21835 PF05598 Transposase domain (DUF772) BRM88_RS21835 PF01609 Transposase DDE domain BRM88_RS21865 PF01427 D-ala-D-ala dipeptidase BRM88_RS21870 PF01510 N-acetylmuramoyl-L-alanine amidase BRM88_RS21880 PF13378 Enolase C-terminal domain-like BRM88_RS21880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM88_RS21920 PF13520 Amino acid permease BRM88_RS21960 PF05360 yiaA/B two helix domain BRM88_RS21965 PF07995 Glucose / Sorbosone dehydrogenase BRM88_RS22000 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_RS22000 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_RS22000 PF14310 Fibronectin type III-like domain BRM88_RS22005 PF02152 Dihydroneopterin aldolase BRM88_RS22010 PF00814 Glycoprotease family BRM88_RS22015 PF01165 Ribosomal protein S21 BRM88_RS22020 PF09424 Yqey-like protein BRM88_RS22035 PF03631 Virulence factor BrkB BRM88_RS22040 PF08275 DNA primase catalytic core, N-terminal domain BRM88_RS22040 PF01807 CHC2 zinc finger BRM88_RS22040 PF10410 DnaB-helicase binding domain of primase BRM88_RS22040 PF08278 DNA primase DnaG DnaB-binding BRM88_RS22060 PF13593 SBF-like CPA transporter family (DUF4137) BRM88_RS22075 PF01040 UbiA prenyltransferase family BRM88_RS22100 PF00510 Cytochrome c oxidase subunit III BRM88_RS22105 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BRM88_RS22115 PF00115 Cytochrome C and Quinol oxidase polypeptide I BRM88_RS22120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BRM88_RS22120 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BRM88_RS22130 PF00171 Aldehyde dehydrogenase family BRM88_RS22130 PF01619 Proline dehydrogenase BRM88_RS22130 PF14850 DNA-binding domain of Proline dehydrogenase BRM88_RS22130 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BRM88_RS22145 PF00210 Ferritin-like domain BRM88_RS22155 PF00293 NUDIX domain BRM88_RS22170 PF00380 Ribosomal protein S9/S16 BRM88_RS22175 PF00572 Ribosomal protein L13 BRM88_RS22180 PF03232 Ubiquinone biosynthesis protein COQ7 BRM88_RS22185 PF00893 Small Multidrug Resistance protein BRM88_RS22190 PF02675 S-adenosylmethionine decarboxylase BRM88_RS22195 PF00325 Bacterial regulatory proteins, crp family BRM88_RS22195 PF00027 Cyclic nucleotide-binding domain BRM88_RS22205 PF00218 Indole-3-glycerol phosphate synthase BRM88_RS22210 PF02885 Glycosyl transferase family, helical bundle domain BRM88_RS22210 PF00591 Glycosyl transferase family, a/b domain BRM88_RS22225 PF00117 Glutamine amidotransferase class-I BRM88_RS22250 PF03971 Monomeric isocitrate dehydrogenase BRM88_RS22260 PF05598 Transposase domain (DUF772) BRM88_RS22290 PF05598 Transposase domain (DUF772) BRM88_RS22290 PF01609 Transposase DDE domain BRM88_RS22305 PF00872 Transposase, Mutator family BRM88_RS22320 PF14489 QueF-like protein BRM88_RS22320 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BRM88_RS22330 PF01546 Peptidase family M20/M25/M40 BRM88_RS22330 PF07687 Peptidase dimerisation domain BRM88_RS22335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_RS22340 PF00873 AcrB/AcrD/AcrF family BRM88_RS22345 PF00873 AcrB/AcrD/AcrF family BRM88_RS22355 PF07063 Domain of unknown function (DUF1338) BRM88_RS22395 PF00581 Rhodanese-like domain BRM88_RS22400 PF02556 Preprotein translocase subunit SecB BRM88_RS22405 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BRM88_RS22405 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BRM88_RS22415 PF00205 Thiamine pyrophosphate enzyme, central domain BRM88_RS22415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BRM88_RS22415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BRM88_RS22420 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS22420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS22425 PF00072 Response regulator receiver domain BRM88_RS22425 PF00158 Sigma-54 interaction domain BRM88_RS22425 PF02954 Bacterial regulatory protein, Fis family BRM88_RS22440 PF07690 Major Facilitator Superfamily BRM88_RS22445 PF00588 SpoU rRNA Methylase family BRM88_RS22460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRM88_RS22460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRM88_RS22465 PF13784 Fic/DOC family N-terminal BRM88_RS22465 PF02661 Fic/DOC family BRM88_RS22470 PF01555 DNA methylase BRM88_RS22480 PF00561 alpha/beta hydrolase fold BRM88_RS22485 PF03692 Putative zinc- or iron-chelating domain BRM88_RS22490 PF00501 AMP-binding enzyme BRM88_RS22495 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BRM88_RS22505 PF05598 Transposase domain (DUF772) BRM88_RS22520 PF01966 HD domain BRM88_RS22520 PF11871 Domain of unknown function (DUF3391) BRM88_RS22525 PF07690 Major Facilitator Superfamily BRM88_RS22550 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_RS22555 PF03692 Putative zinc- or iron-chelating domain BRM88_RS22560 PF00920 Dehydratase family BRM88_RS22565 PF13495 Phage integrase, N-terminal SAM-like domain BRM88_RS22565 PF00589 Phage integrase family BRM88_RS22585 PF01609 Transposase DDE domain BRM88_RS22585 PF05598 Transposase domain (DUF772) BRM88_RS22595 PF01218 Coproporphyrinogen III oxidase BRM88_RS22610 PF01367 5'-3' exonuclease, C-terminal SAM fold BRM88_RS22610 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BRM88_RS22610 PF01612 3'-5' exonuclease BRM88_RS22610 PF00476 DNA polymerase family A BRM88_RS22630 PF17831 Pyruvate dehydrogenase E1 component middle domain BRM88_RS22630 PF00456 Transketolase, thiamine diphosphate binding domain BRM88_RS22645 PF03377 TAL effector repeat BRM88_RS22660 PF00665 Integrase core domain BRM88_RS22660 PF13333 Integrase core domain BRM88_RS22660 PF13276 HTH-like domain BRM88_RS22665 PF01527 Transposase BRM88_RS22695 PF04264 YceI-like domain BRM88_RS22700 PF00881 Nitroreductase family BRM88_RS22725 PF02592 Putative vitamin uptake transporter BRM88_RS22730 PF03710 Glutamate-ammonia ligase adenylyltransferase BRM88_RS22730 PF08335 GlnD PII-uridylyltransferase BRM88_RS22740 PF08450 SMP-30/Gluconolactonase/LRE-like region BRM88_RS22780 PF00793 DAHP synthetase I family BRM88_RS22795 PF00593 TonB dependent receptor BRM88_RS22795 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS22805 PF00118 TCP-1/cpn60 chaperonin family BRM88_RS22810 PF00166 Chaperonin 10 Kd subunit BRM88_RS22830 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_RS22840 PF04542 Sigma-70 region 2 BRM88_RS22840 PF04545 Sigma-70, region 4 BRM88_RS22845 PF03167 Uracil DNA glycosylase superfamily BRM88_RS22850 PF00072 Response regulator receiver domain BRM88_RS22855 PF18075 FtsX extracellular domain BRM88_RS22860 PF00005 ABC transporter BRM88_RS22865 PF00270 DEAD/DEAH box helicase BRM88_RS22865 PF00271 Helicase conserved C-terminal domain BRM88_RS22865 PF12300 ATP-dependent RNA helicase RhlB BRM88_RS22870 PF00085 Thioredoxin BRM88_RS22875 PF07497 Rho termination factor, RNA-binding domain BRM88_RS22875 PF07498 Rho termination factor, N-terminal domain BRM88_RS22875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_RS22890 PF01103 Surface antigen BRM88_RS22890 PF17243 POTRA domain TamA domain 1 BRM88_RS22895 PF04357 TamB, inner membrane protein subunit of TAM complex BRM88_RS22930 PF07977 FabA-like domain BRM88_RS22935 PF01553 Acyltransferase BRM88_RS22945 PF00550 Phosphopantetheine attachment site BRM88_RS22950 PF04820 Tryptophan halogenase BRM88_RS23005 PF01638 HxlR-like helix-turn-helix BRM88_RS23010 PF05368 NmrA-like family BRM88_RS23025 PF03812 2-keto-3-deoxygluconate permease BRM88_RS23030 PF01717 Cobalamin-independent synthase, Catalytic domain BRM88_RS23030 PF08267 Cobalamin-independent synthase, N-terminal domain BRM88_RS23040 PF03358 NADPH-dependent FMN reductase BRM88_RS23045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS23045 PF03466 LysR substrate binding domain BRM88_RS23050 PF02677 Epoxyqueuosine reductase QueH BRM88_RS23070 PF00072 Response regulator receiver domain BRM88_RS23070 PF00486 Transcriptional regulatory protein, C terminal BRM88_RS23075 PF00551 Formyl transferase BRM88_RS23095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRM88_RS23095 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BRM88_RS23100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRM88_RS23105 PF02146 Sir2 family BRM88_RS23115 PF07690 Major Facilitator Superfamily BRM88_RS23120 PF03466 LysR substrate binding domain BRM88_RS23120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS23140 PF01026 TatD related DNase BRM88_RS23190 PF00266 Aminotransferase class-V BRM88_RS23205 PF01014 Uricase BRM88_RS23205 PF09349 OHCU decarboxylase BRM88_RS23260 PF00326 Prolyl oligopeptidase family BRM88_RS23265 PF00289 Biotin carboxylase, N-terminal domain BRM88_RS23265 PF02785 Biotin carboxylase C-terminal domain BRM88_RS23265 PF00364 Biotin-requiring enzyme BRM88_RS23265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRM88_RS23265 PF18140 Propionyl-coenzyme A carboxylase BT domain BRM88_RS23270 PF01039 Carboxyl transferase domain BRM88_RS23275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_RS23275 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_RS23275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_RS23330 PF02492 CobW/HypB/UreG, nucleotide-binding domain BRM88_RS23330 PF07683 Cobalamin synthesis protein cobW C-terminal domain BRM88_RS23350 PF03969 AFG1-like ATPase BRM88_RS23365 PF07715 TonB-dependent Receptor Plug Domain BRM88_RS23365 PF00593 TonB dependent receptor BRM88_RS23370 PF13181 Tetratricopeptide repeat BRM88_RS23375 PF05746 DALR anticodon binding domain BRM88_RS23375 PF02092 Glycyl-tRNA synthetase beta subunit BRM88_RS23380 PF02091 Glycyl-tRNA synthetase alpha subunit BRM88_RS23385 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRM88_RS23385 PF00437 Type II/IV secretion system protein BRM88_RS23410 PF00117 Glutamine amidotransferase class-I BRM88_RS23410 PF00958 GMP synthase C terminal domain BRM88_RS23420 PF00902 Sec-independent protein translocase protein (TatC) BRM88_RS23425 PF02416 mttA/Hcf106 family BRM88_RS23430 PF02416 mttA/Hcf106 family BRM88_RS23440 PF00762 Ferrochelatase BRM88_RS23445 PF12697 Alpha/beta hydrolase family BRM88_RS23470 PF04381 Putative exonuclease, RdgC BRM88_RS23475 PF01171 PP-loop family BRM88_RS23490 PF00356 Bacterial regulatory proteins, lacI family BRM88_RS23495 PF03648 Glycosyl hydrolase family 67 N-terminus BRM88_RS23495 PF07477 Glycosyl hydrolase family 67 C-terminus BRM88_RS23495 PF07488 Glycosyl hydrolase family 67 middle domain BRM88_RS23505 PF13378 Enolase C-terminal domain-like BRM88_RS23505 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM88_RS23510 PF04616 Glycosyl hydrolases family 43 BRM88_RS23510 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BRM88_RS23515 PF14310 Fibronectin type III-like domain BRM88_RS23515 PF07691 PA14 domain BRM88_RS23515 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_RS23515 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_RS23520 PF01232 Mannitol dehydrogenase Rossmann domain BRM88_RS23520 PF08125 Mannitol dehydrogenase C-terminal domain BRM88_RS23540 PF02614 Glucuronate isomerase BRM88_RS23545 PF03422 Carbohydrate binding module (family 6) BRM88_RS23545 PF00553 Cellulose binding domain BRM88_RS23545 PF00331 Glycosyl hydrolase family 10 BRM88_RS23575 PF04616 Glycosyl hydrolases family 43 BRM88_RS23615 PF12792 CSS motif domain associated with EAL BRM88_RS23615 PF00563 EAL domain BRM88_RS23620 PF00487 Fatty acid desaturase BRM88_RS23625 PF00970 Oxidoreductase FAD-binding domain BRM88_RS23625 PF00111 2Fe-2S iron-sulfur cluster binding domain BRM88_RS23625 PF00175 Oxidoreductase NAD-binding domain BRM88_RS23630 PF00440 Bacterial regulatory proteins, tetR family BRM88_RS23665 PF01047 MarR family BRM88_RS23670 PF02566 OsmC-like protein BRM88_RS23765 PF01381 Helix-turn-helix BRM88_RS23770 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BRM88_RS23775 PF13538 UvrD-like helicase C-terminal domain BRM88_RS23780 PF12705 PD-(D/E)XK nuclease superfamily BRM88_RS23780 PF00580 UvrD/REP helicase N-terminal domain BRM88_RS23780 PF13361 UvrD-like helicase C-terminal domain BRM88_RS23785 PF17946 RecC C-terminal domain BRM88_RS23825 PF00080 Copper/zinc superoxide dismutase (SODC) BRM88_RS23830 PF00080 Copper/zinc superoxide dismutase (SODC) BRM88_RS23835 PF00158 Sigma-54 interaction domain BRM88_RS23835 PF00072 Response regulator receiver domain BRM88_RS23835 PF02954 Bacterial regulatory protein, Fis family BRM88_RS23840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_RS23840 PF00512 His Kinase A (phospho-acceptor) domain BRM88_RS23840 PF00989 PAS fold BRM88_RS23845 PF00909 Ammonium Transporter Family BRM88_RS23850 PF00543 Nitrogen regulatory protein P-II BRM88_RS23855 PF00120 Glutamine synthetase, catalytic domain BRM88_RS23855 PF03951 Glutamine synthetase, beta-Grasp domain BRM88_RS23860 PF02673 Bacitracin resistance protein BacA BRM88_RS23900 PF03061 Thioesterase superfamily BRM88_RS23905 PF13091 PLD-like domain BRM88_RS23920 PF01883 Iron-sulfur cluster assembly protein BRM88_RS23920 PF10609 NUBPL iron-transfer P-loop NTPase BRM88_RS23940 PF01381 Helix-turn-helix BRM88_RS23945 PF13657 HipA N-terminal domain BRM88_RS23945 PF07804 HipA-like C-terminal domain BRM88_RS23950 PF10017 Histidine-specific methyltransferase, SAM-dependent BRM88_RS23955 PF12867 DinB superfamily BRM88_RS23955 PF03781 Sulfatase-modifying factor enzyme 1 BRM88_RS23965 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_RS23970 PF00005 ABC transporter BRM88_RS23970 PF00571 CBS domain BRM88_RS23985 PF00005 ABC transporter BRM88_RS23995 PF01734 Patatin-like phospholipase BRM88_RS24010 PF05598 Transposase domain (DUF772) BRM88_RS24010 PF01609 Transposase DDE domain BRM88_RS24035 PF00248 Aldo/keto reductase family BRM88_RS24040 PF16884 N-terminal domain of oxidoreductase BRM88_RS24040 PF00107 Zinc-binding dehydrogenase BRM88_RS24045 PF00248 Aldo/keto reductase family BRM88_RS24055 PF00849 RNA pseudouridylate synthase BRM88_RS24070 PF04408 Helicase associated domain (HA2) BRM88_RS24070 PF08482 ATP-dependent helicase C-terminal BRM88_RS24070 PF00270 DEAD/DEAH box helicase BRM88_RS24070 PF00271 Helicase conserved C-terminal domain BRM88_RS24075 PF07308 Protein of unknown function (DUF1456) BRM88_RS24080 PF13378 Enolase C-terminal domain-like BRM88_RS24080 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM88_RS24090 PF01557 Fumarylacetoacetate (FAA) hydrolase family BRM88_RS24105 PF00248 Aldo/keto reductase family BRM88_RS24115 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BRM88_RS24115 PF04616 Glycosyl hydrolases family 43 BRM88_RS24140 PF00072 Response regulator receiver domain BRM88_RS24140 PF00196 Bacterial regulatory proteins, luxR family BRM88_RS24145 PF00501 AMP-binding enzyme BRM88_RS24145 PF13193 AMP-binding enzyme C-terminal domain BRM88_RS24145 PF16177 Acetyl-coenzyme A synthetase N-terminus BRM88_RS24160 PF04341 Protein of unknown function, DUF485 BRM88_RS24165 PF00474 Sodium:solute symporter family BRM88_RS24180 PF03372 Endonuclease/Exonuclease/phosphatase family BRM88_RS24190 PF04226 Transglycosylase associated protein BRM88_RS24195 PF01648 4'-phosphopantetheinyl transferase superfamily BRM88_RS24200 PF16655 PhoD-like phosphatase, N-terminal domain BRM88_RS24200 PF09423 PhoD-like phosphatase BRM88_RS24205 PF09423 PhoD-like phosphatase BRM88_RS24205 PF16655 PhoD-like phosphatase, N-terminal domain BRM88_RS24210 PF02527 rRNA small subunit methyltransferase G BRM88_RS24225 PF00830 Ribosomal L28 family BRM88_RS24230 PF00471 Ribosomal protein L33 BRM88_RS24235 PF04909 Amidohydrolase BRM88_RS24255 PF04303 PrpF protein BRM88_RS24260 PF03737 Aldolase/RraA BRM88_RS24265 PF03466 LysR substrate binding domain BRM88_RS24265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_RS24270 PF13091 PLD-like domain BRM88_RS24270 PF13396 Phospholipase_D-nuclease N-terminal BRM88_RS24290 PF13361 UvrD-like helicase C-terminal domain BRM88_RS24290 PF00580 UvrD/REP helicase N-terminal domain BRM88_RS24305 PF13520 Amino acid permease BRM88_RS24315 PF02646 RmuC family BRM88_RS24325 PF00255 Glutathione peroxidase BRM88_RS24345 PF04055 Radical SAM superfamily BRM88_RS24355 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BRM88_RS24370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRM88_RS24370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRM88_RS24380 PF03572 Peptidase family S41 BRM88_RS24380 PF13180 PDZ domain BRM88_RS24385 PF01551 Peptidase family M23 BRM88_RS24395 PF04389 Peptidase family M28 BRM88_RS24445 PF02463 RecF/RecN/SMC N terminal domain BRM88_RS24450 PF01227 GTP cyclohydrolase I BRM88_RS24475 PF00083 Sugar (and other) transporter BRM88_RS24485 PF13396 Phospholipase_D-nuclease N-terminal BRM88_RS24485 PF13091 PLD-like domain BRM88_RS24515 PF05598 Transposase domain (DUF772) BRM88_RS24585 PF02595 Glycerate kinase family BRM88_RS24590 PF07690 Major Facilitator Superfamily BRM88_RS24605 PF10672 S-adenosylmethionine-dependent methyltransferase BRM88_RS24605 PF17785 PUA-like domain BRM88_RS24615 PF03741 Integral membrane protein TerC family BRM88_RS24620 PF01694 Rhomboid family BRM88_RS24625 PF03009 Glycerophosphoryl diester phosphodiesterase family BRM88_RS24635 PF01569 PAP2 superfamily BRM88_RS24640 PF10396 GTP-binding protein TrmE N-terminus BRM88_RS24640 PF01926 50S ribosome-binding GTPase BRM88_RS24640 PF12631 MnmE helical domain BRM88_RS24645 PF01522 Polysaccharide deacetylase BRM88_RS24650 PF02096 60Kd inner membrane protein BRM88_RS24650 PF14849 YidC periplasmic domain BRM88_RS24655 PF00825 Ribonuclease P BRM88_RS24660 PF00468 Ribosomal protein L34